Query 006158
Match_columns 658
No_of_seqs 369 out of 2215
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:13:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 1E-130 2E-135 1105.1 60.6 657 1-658 237-894 (894)
2 PLN02361 alpha-amylase 100.0 4E-72 8.7E-77 603.6 42.6 386 265-657 10-401 (401)
3 PLN00196 alpha-amylase; Provis 100.0 3E-72 6.5E-77 611.5 41.7 387 266-657 24-427 (428)
4 PRK10785 maltodextrin glucosid 100.0 7E-71 1.5E-75 628.3 35.4 424 119-632 63-559 (598)
5 PRK09505 malS alpha-amylase; R 100.0 8.6E-62 1.9E-66 552.9 31.5 363 228-631 190-681 (683)
6 PRK09441 cytoplasmic alpha-amy 100.0 1.8E-60 3.9E-65 531.9 38.1 349 267-634 4-431 (479)
7 TIGR02456 treS_nterm trehalose 100.0 4.1E-58 9E-63 519.2 33.1 354 227-633 5-490 (539)
8 TIGR02403 trehalose_treC alpha 100.0 3E-56 6.5E-61 503.3 28.9 355 228-635 5-503 (543)
9 PRK10933 trehalose-6-phosphate 100.0 5.1E-55 1.1E-59 492.7 30.3 356 227-635 10-509 (551)
10 TIGR02104 pulA_typeI pullulana 100.0 1.5E-51 3.3E-56 470.9 26.4 363 226-634 126-580 (605)
11 TIGR02402 trehalose_TreZ malto 100.0 4.5E-50 9.7E-55 451.8 31.5 341 263-635 94-538 (542)
12 TIGR02100 glgX_debranch glycog 100.0 7.4E-50 1.6E-54 458.7 29.1 322 227-607 155-577 (688)
13 PRK12313 glycogen branching en 100.0 3.1E-49 6.8E-54 454.5 33.6 332 264-634 149-562 (633)
14 TIGR01515 branching_enzym alph 100.0 3.6E-49 7.9E-54 451.2 30.7 330 264-634 140-549 (613)
15 PF00128 Alpha-amylase: Alpha 100.0 1.1E-50 2.4E-55 426.6 14.7 286 282-583 1-309 (316)
16 PRK03705 glycogen debranching 100.0 1.4E-48 3E-53 445.1 29.7 326 281-634 173-616 (658)
17 PRK14510 putative bifunctional 100.0 8E-49 1.7E-53 472.7 29.1 326 261-620 157-595 (1221)
18 PRK05402 glycogen branching en 100.0 9.3E-48 2E-52 447.3 31.7 333 263-634 242-658 (726)
19 PRK14706 glycogen branching en 100.0 1.3E-46 2.9E-51 428.1 30.5 348 264-648 146-567 (639)
20 TIGR02102 pullulan_Gpos pullul 100.0 4.8E-45 1E-49 430.1 33.5 348 261-634 450-949 (1111)
21 PRK12568 glycogen branching en 100.0 2.4E-44 5.1E-49 408.7 32.2 347 262-649 246-674 (730)
22 TIGR03852 sucrose_gtfA sucrose 100.0 1.1E-44 2.4E-49 394.7 23.8 332 268-634 3-463 (470)
23 PRK14705 glycogen branching en 100.0 1.3E-43 2.9E-48 420.1 30.2 337 263-648 748-1167(1224)
24 PRK13840 sucrose phosphorylase 100.0 3.7E-43 8E-48 384.9 30.5 330 268-632 5-467 (495)
25 PLN02960 alpha-amylase 100.0 1.7E-42 3.7E-47 393.5 31.3 333 263-634 396-823 (897)
26 COG0366 AmyA Glycosidases [Car 100.0 1.3E-43 2.8E-48 399.2 19.8 368 228-634 1-485 (505)
27 TIGR02103 pullul_strch alpha-1 100.0 5.2E-42 1.1E-46 397.5 27.9 340 281-634 275-845 (898)
28 PLN02447 1,4-alpha-glucan-bran 100.0 1.2E-39 2.6E-44 371.0 34.8 341 264-648 231-674 (758)
29 PLN02877 alpha-amylase/limit d 100.0 2.2E-39 4.8E-44 374.5 28.9 347 261-621 338-887 (970)
30 TIGR02455 TreS_stutzeri trehal 100.0 1E-37 2.2E-42 342.8 32.0 350 286-656 75-680 (688)
31 KOG0471 Alpha-amylase [Carbohy 100.0 8.3E-39 1.8E-43 359.6 22.5 350 281-634 36-506 (545)
32 COG1523 PulA Type II secretory 100.0 8.4E-38 1.8E-42 353.2 16.5 317 260-607 169-596 (697)
33 TIGR02401 trehalose_TreY malto 100.0 1.6E-35 3.6E-40 338.5 30.1 186 281-466 12-287 (825)
34 COG0296 GlgB 1,4-alpha-glucan 100.0 4.6E-36 1E-40 333.9 24.9 334 262-636 144-563 (628)
35 PLN03244 alpha-amylase; Provis 100.0 6.3E-29 1.4E-33 277.9 28.1 291 317-648 426-809 (872)
36 KOG0470 1,4-alpha-glucan branc 100.0 1.5E-29 3.3E-34 278.8 22.5 166 262-442 229-407 (757)
37 PRK14511 maltooligosyl trehalo 100.0 3.6E-28 7.8E-33 279.4 33.1 82 281-362 16-99 (879)
38 KOG2212 Alpha-amylase [Carbohy 100.0 2E-27 4.3E-32 240.1 25.8 337 264-636 26-444 (504)
39 PLN02784 alpha-amylase 100.0 1.7E-28 3.6E-33 278.4 12.3 128 31-159 77-211 (894)
40 smart00642 Aamy Alpha-amylase 99.9 7.9E-26 1.7E-30 217.4 11.1 92 268-359 2-97 (166)
41 PRK14507 putative bifunctional 99.8 1.3E-19 2.7E-24 220.6 18.0 80 281-360 754-835 (1693)
42 COG3280 TreY Maltooligosyl tre 99.8 7.2E-18 1.6E-22 186.1 15.4 78 283-360 17-96 (889)
43 TIGR01531 glyc_debranch glycog 99.7 1.3E-15 2.9E-20 180.5 29.3 82 281-362 128-215 (1464)
44 PF14872 GHL5: Hypothetical gl 99.0 1.2E-08 2.7E-13 112.2 18.0 133 281-442 192-393 (811)
45 PF14701 hDGE_amylase: glucano 98.8 1.2E-08 2.6E-13 110.3 8.2 83 281-363 18-108 (423)
46 PF02324 Glyco_hydro_70: Glyco 98.6 8.7E-07 1.9E-11 98.7 16.2 183 402-601 141-400 (809)
47 KOG3625 Alpha amylase [Carbohy 98.5 6.2E-06 1.3E-10 93.9 19.1 79 282-360 139-225 (1521)
48 PF02638 DUF187: Glycosyl hydr 98.2 6.3E-06 1.4E-10 87.5 11.2 141 283-438 17-162 (311)
49 PF14871 GHL6: Hypothetical gl 98.0 7.9E-05 1.7E-09 69.0 11.6 125 288-438 3-132 (132)
50 PF02324 Glyco_hydro_70: Glyco 97.8 2.8E-05 6E-10 87.1 6.9 76 284-359 586-674 (809)
51 PF07821 Alpha-amyl_C2: Alpha- 97.7 9.3E-05 2E-09 57.9 6.4 56 600-657 4-59 (59)
52 PF11941 DUF3459: Domain of un 97.6 0.0002 4.3E-09 61.4 7.2 47 588-634 1-54 (89)
53 COG1649 Uncharacterized protei 97.5 0.00049 1.1E-08 74.8 9.6 143 282-439 61-208 (418)
54 smart00810 Alpha-amyl_C2 Alpha 97.4 0.00096 2.1E-08 52.7 7.9 54 600-657 4-61 (61)
55 PRK14508 4-alpha-glucanotransf 97.1 0.074 1.6E-06 60.2 21.9 58 268-325 9-68 (497)
56 cd06592 GH31_glucosidase_KIAA1 97.0 0.0056 1.2E-07 64.9 11.3 135 282-441 27-166 (303)
57 cd06593 GH31_xylosidase_YicI Y 96.8 0.0074 1.6E-07 64.2 11.0 140 282-444 21-163 (308)
58 cd06597 GH31_transferase_CtsY 96.8 0.0087 1.9E-07 64.5 11.1 144 283-441 22-188 (340)
59 PF02065 Melibiase: Melibiase; 96.5 0.031 6.7E-07 61.3 13.1 136 283-440 56-193 (394)
60 PF13200 DUF4015: Putative gly 95.8 0.071 1.5E-06 56.6 10.8 133 282-440 10-147 (316)
61 cd06599 GH31_glycosidase_Aec37 95.7 0.093 2E-06 56.1 11.6 136 284-440 28-168 (317)
62 cd06594 GH31_glucosidase_YihQ 95.5 0.022 4.8E-07 60.8 6.1 140 283-442 21-168 (317)
63 PF13199 Glyco_hydro_66: Glyco 95.4 0.075 1.6E-06 60.6 9.8 140 283-440 116-268 (559)
64 cd06600 GH31_MGAM-like This fa 95.3 0.077 1.7E-06 56.7 9.5 134 282-440 21-160 (317)
65 PRK14582 pgaB outer membrane N 95.2 0.24 5.2E-06 57.8 13.3 129 284-438 333-466 (671)
66 PF03423 CBM_25: Carbohydrate 95.0 0.046 1E-06 46.8 5.3 68 71-155 19-86 (87)
67 cd06604 GH31_glucosidase_II_Ma 94.8 0.11 2.3E-06 56.2 8.8 132 283-440 22-159 (339)
68 cd06602 GH31_MGAM_SI_GAA This 94.7 0.29 6.3E-06 52.8 11.9 137 283-441 22-166 (339)
69 PLN02635 disproportionating en 94.7 0.71 1.5E-05 52.6 15.1 23 332-354 224-246 (538)
70 cd06591 GH31_xylosidase_XylS X 94.7 0.061 1.3E-06 57.5 6.4 136 282-441 21-160 (319)
71 PRK10426 alpha-glucosidase; Pr 93.6 0.34 7.3E-06 56.7 10.0 134 284-441 220-364 (635)
72 PF00150 Cellulase: Cellulase 93.5 0.17 3.7E-06 52.3 6.7 79 265-355 5-85 (281)
73 PF14488 DUF4434: Domain of un 93.2 0.36 7.7E-06 46.6 8.0 71 284-356 19-89 (166)
74 PRK14507 putative bifunctional 92.7 0.3 6.4E-06 62.2 8.3 54 398-451 1035-1090(1693)
75 COG3589 Uncharacterized conser 92.7 0.26 5.7E-06 51.9 6.6 59 282-354 13-71 (360)
76 PRK10658 putative alpha-glucos 92.3 0.21 4.6E-06 58.6 5.9 130 284-442 282-420 (665)
77 PF01055 Glyco_hydro_31: Glyco 92.1 0.34 7.5E-06 54.1 7.3 136 283-442 41-182 (441)
78 cd06542 GH18_EndoS-like Endo-b 91.6 0.64 1.4E-05 47.8 8.1 65 330-439 49-113 (255)
79 cd06598 GH31_transferase_CtsZ 91.6 0.55 1.2E-05 50.2 7.7 133 283-440 22-164 (317)
80 PF07745 Glyco_hydro_53: Glyco 91.2 0.7 1.5E-05 49.5 8.0 54 288-354 27-80 (332)
81 cd06595 GH31_xylosidase_XylS-l 90.1 0.57 1.2E-05 49.4 6.1 130 282-440 22-159 (292)
82 cd06562 GH20_HexA_HexB-like Be 90.0 3.5 7.6E-05 44.7 12.2 125 284-430 17-149 (348)
83 PRK11052 malQ 4-alpha-glucanot 90.0 1.1 2.4E-05 52.8 8.9 24 332-355 355-380 (695)
84 PF05913 DUF871: Bacterial pro 89.8 0.29 6.2E-06 53.0 3.6 59 283-355 12-70 (357)
85 TIGR00217 malQ 4-alpha-glucano 89.2 1.8 4E-05 49.2 9.6 24 332-355 212-235 (513)
86 cd02875 GH18_chitobiase Chitob 89.0 0.84 1.8E-05 49.6 6.5 30 410-439 92-121 (358)
87 cd06589 GH31 The enzymes of gl 88.9 3.1 6.7E-05 43.2 10.5 63 282-353 21-87 (265)
88 PF02446 Glyco_hydro_77: 4-alp 88.5 0.74 1.6E-05 52.3 5.9 24 332-355 192-215 (496)
89 COG3280 TreY Maltooligosyl tre 88.1 0.55 1.2E-05 54.2 4.4 71 561-631 709-826 (889)
90 PF02449 Glyco_hydro_42: Beta- 87.8 0.95 2.1E-05 49.5 6.1 121 285-439 10-137 (374)
91 cd06570 GH20_chitobiase-like_1 87.5 7.4 0.00016 41.5 12.4 122 284-427 17-144 (311)
92 COG1501 Alpha-glucosidases, fa 87.3 1.1 2.5E-05 53.3 6.7 87 333-440 322-415 (772)
93 PLN02763 hydrolase, hydrolyzin 87.2 1.3 2.7E-05 53.9 6.9 131 283-439 199-335 (978)
94 PF10566 Glyco_hydro_97: Glyco 84.9 12 0.00027 39.0 12.0 65 280-352 27-93 (273)
95 cd06568 GH20_SpHex_like A subg 84.9 12 0.00026 40.3 12.4 125 283-429 16-153 (329)
96 cd06564 GH20_DspB_LnbB-like Gl 84.8 8.6 0.00019 41.2 11.4 122 283-430 15-155 (326)
97 cd06601 GH31_lyase_GLase GLase 84.3 2.8 6E-05 45.1 7.3 109 283-440 22-133 (332)
98 KOG1065 Maltase glucoamylase a 83.5 8.6 0.00019 45.5 11.1 135 282-439 308-447 (805)
99 cd06603 GH31_GANC_GANAB_alpha 82.8 1.8 3.8E-05 46.7 5.1 134 282-440 21-162 (339)
100 COG1640 MalQ 4-alpha-glucanotr 82.3 9.7 0.00021 43.2 10.7 26 332-357 210-235 (520)
101 cd06569 GH20_Sm-chitobiase-lik 82.3 4.7 0.0001 45.2 8.3 77 283-359 20-125 (445)
102 cd06545 GH18_3CO4_chitinase Th 82.1 4.4 9.6E-05 41.6 7.6 81 331-456 45-130 (253)
103 cd02871 GH18_chitinase_D-like 80.7 6.4 0.00014 41.9 8.4 63 330-440 58-120 (312)
104 cd06563 GH20_chitobiase-like T 79.8 20 0.00044 38.9 12.0 124 284-427 17-162 (357)
105 PF14701 hDGE_amylase: glucano 78.5 4 8.6E-05 45.1 6.0 55 401-457 360-422 (423)
106 PRK15452 putative protease; Pr 78.2 12 0.00027 41.8 9.9 53 282-350 11-64 (443)
107 PF00724 Oxidored_FMN: NADH:fl 77.9 12 0.00026 40.4 9.4 69 286-362 37-108 (341)
108 TIGR01370 cysRS possible cyste 77.8 8.5 0.00018 41.0 8.1 38 403-441 134-171 (315)
109 smart00812 Alpha_L_fucos Alpha 77.1 45 0.00098 36.7 13.7 141 287-464 83-235 (384)
110 PF03198 Glyco_hydro_72: Gluca 74.6 6.5 0.00014 41.5 6.0 56 284-360 52-107 (314)
111 cd06547 GH85_ENGase Endo-beta- 74.3 4.3 9.3E-05 43.8 4.8 28 415-442 88-115 (339)
112 PF01301 Glyco_hydro_35: Glyco 73.9 2.4 5.2E-05 45.3 2.8 58 287-353 26-84 (319)
113 PF13380 CoA_binding_2: CoA bi 72.2 7 0.00015 35.2 5.0 44 284-351 65-108 (116)
114 PF11852 DUF3372: Domain of un 72.1 3.2 7E-05 40.0 2.8 54 582-635 40-117 (168)
115 PF02446 Glyco_hydro_77: 4-alp 71.6 3.5 7.6E-05 46.9 3.5 54 282-335 15-71 (496)
116 cd02742 GH20_hexosaminidase Be 71.3 11 0.00025 39.9 7.1 122 283-429 14-147 (303)
117 PF00728 Glyco_hydro_20: Glyco 70.8 6.6 0.00014 42.2 5.4 136 283-436 16-162 (351)
118 cd06565 GH20_GcnA-like Glycosy 69.9 22 0.00048 37.6 9.0 112 283-430 15-131 (301)
119 PRK11052 malQ 4-alpha-glucanot 69.6 12 0.00027 44.2 7.5 73 267-339 145-224 (695)
120 PLN02635 disproportionating en 69.6 11 0.00024 43.2 6.9 68 267-334 31-104 (538)
121 PLN02950 4-alpha-glucanotransf 69.4 16 0.00035 44.6 8.6 70 267-336 263-340 (909)
122 cd06546 GH18_CTS3_chitinase GH 68.1 62 0.0013 33.4 11.6 50 410-459 92-145 (256)
123 PF14883 GHL13: Hypothetical g 68.0 95 0.0021 32.6 12.6 122 287-436 19-142 (294)
124 PLN02316 synthase/transferase 67.1 22 0.00048 43.9 9.1 94 44-156 139-238 (1036)
125 COG3867 Arabinogalactan endo-1 66.6 16 0.00035 38.2 6.6 57 288-353 66-125 (403)
126 smart00632 Aamy_C Aamy_C domai 65.7 9.6 0.00021 31.9 4.2 22 613-634 7-28 (81)
127 PF01120 Alpha_L_fucos: Alpha- 64.3 60 0.0013 35.1 11.1 147 287-465 93-246 (346)
128 PRK14510 putative bifunctional 64.0 13 0.00028 47.0 6.6 68 267-334 726-800 (1221)
129 PLN03059 beta-galactosidase; P 63.2 15 0.00033 44.0 6.5 61 284-352 58-118 (840)
130 PF08821 CGGC: CGGC domain; I 62.9 28 0.0006 31.1 6.7 53 284-350 51-104 (107)
131 PLN02316 synthase/transferase 62.2 29 0.00062 42.9 8.8 76 70-161 507-584 (1036)
132 cd02874 GH18_CFLE_spore_hydrol 61.5 11 0.00025 39.8 4.8 31 410-440 83-113 (313)
133 cd04733 OYE_like_2_FMN Old yel 61.4 89 0.0019 33.6 11.7 29 331-361 81-109 (338)
134 TIGR03849 arch_ComA phosphosul 60.6 24 0.00052 36.0 6.6 44 291-352 77-120 (237)
135 PRK15447 putative protease; Pr 59.3 31 0.00067 36.6 7.6 56 273-350 10-66 (301)
136 PLN03236 4-alpha-glucanotransf 59.2 23 0.0005 42.1 7.1 68 268-335 64-139 (745)
137 PF13204 DUF4038: Protein of u 59.2 26 0.00056 36.9 6.9 69 284-356 29-110 (289)
138 COG2730 BglC Endoglucanase [Ca 59.0 17 0.00037 40.2 5.8 59 287-352 75-136 (407)
139 PF02806 Alpha-amylase_C: Alph 58.2 14 0.0003 31.5 4.0 25 610-634 5-33 (95)
140 PF09260 DUF1966: Domain of un 57.7 26 0.00057 30.2 5.5 40 609-651 1-43 (91)
141 KOG2499 Beta-N-acetylhexosamin 57.2 50 0.0011 37.0 8.7 30 330-359 248-278 (542)
142 cd00598 GH18_chitinase-like Th 56.2 48 0.001 32.4 8.0 31 410-440 84-114 (210)
143 cd02803 OYE_like_FMN_family Ol 55.6 47 0.001 35.3 8.4 60 294-361 42-104 (327)
144 cd02929 TMADH_HD_FMN Trimethyl 55.6 1E+02 0.0022 33.7 11.0 29 331-361 82-110 (370)
145 KOG0496 Beta-galactosidase [Ca 52.7 27 0.00058 40.5 6.0 60 286-353 50-109 (649)
146 PLN03236 4-alpha-glucanotransf 52.6 32 0.00069 40.9 6.8 24 332-355 274-297 (745)
147 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.4 2E+02 0.0042 30.0 12.2 96 286-455 92-188 (275)
148 TIGR01210 conserved hypothetic 51.4 26 0.00057 37.3 5.5 60 288-355 117-178 (313)
149 cd02931 ER_like_FMN Enoate red 51.4 1.6E+02 0.0034 32.4 11.7 28 331-360 82-110 (382)
150 PF02679 ComA: (2R)-phospho-3- 49.9 38 0.00082 34.8 6.1 55 281-353 73-134 (244)
151 PRK10076 pyruvate formate lyas 47.4 61 0.0013 32.5 7.1 66 284-350 144-211 (213)
152 cd04747 OYE_like_5_FMN Old yel 47.3 1.7E+02 0.0036 32.0 10.9 29 331-361 77-105 (361)
153 PTZ00445 p36-lilke protein; Pr 47.2 45 0.00098 33.5 5.9 62 286-350 30-96 (219)
154 PLN02950 4-alpha-glucanotransf 47.0 40 0.00086 41.3 6.7 23 333-355 462-484 (909)
155 PRK13210 putative L-xylulose 5 46.7 41 0.00089 34.7 6.0 53 287-350 18-70 (284)
156 PRK07094 biotin synthase; Prov 46.6 31 0.00067 36.7 5.2 65 288-360 129-193 (323)
157 PRK08207 coproporphyrinogen II 46.1 38 0.00083 38.5 6.0 64 288-359 269-333 (488)
158 TIGR00539 hemN_rel putative ox 46.0 39 0.00085 36.6 6.0 65 288-360 100-165 (360)
159 COG1306 Uncharacterized conser 45.9 3.4E+02 0.0073 28.8 12.0 138 284-439 76-218 (400)
160 PF10438 Cyc-maltodext_C: Cycl 45.7 28 0.00061 29.1 3.7 25 611-635 6-33 (78)
161 PF01373 Glyco_hydro_14: Glyco 45.7 24 0.00052 38.7 4.1 67 281-360 12-81 (402)
162 COG1902 NemA NADH:flavin oxido 45.3 2.4E+02 0.0052 30.8 11.7 28 331-360 82-109 (363)
163 PLN02411 12-oxophytodienoate r 45.0 1.8E+02 0.0038 32.1 10.8 29 331-361 86-114 (391)
164 PF01212 Beta_elim_lyase: Beta 44.7 22 0.00047 37.5 3.5 24 330-353 143-166 (290)
165 COG2873 MET17 O-acetylhomoseri 44.6 42 0.00092 36.4 5.6 59 281-355 112-187 (426)
166 TIGR03356 BGL beta-galactosida 44.3 49 0.0011 36.9 6.5 63 284-353 53-115 (427)
167 PRK08208 coproporphyrinogen II 43.8 38 0.00082 37.8 5.5 65 288-360 141-206 (430)
168 PRK05628 coproporphyrinogen II 43.4 44 0.00095 36.4 5.9 65 288-360 108-173 (375)
169 PRK01060 endonuclease IV; Prov 43.0 52 0.0011 34.0 6.1 52 285-348 12-63 (281)
170 PRK10605 N-ethylmaleimide redu 42.9 3.8E+02 0.0081 29.2 12.9 29 331-361 78-106 (362)
171 PRK09856 fructoselysine 3-epim 42.8 60 0.0013 33.3 6.6 50 287-349 15-64 (275)
172 TIGR00433 bioB biotin syntheta 42.6 53 0.0011 34.3 6.2 60 288-356 123-182 (296)
173 PRK06256 biotin synthase; Vali 42.5 34 0.00073 36.7 4.7 60 288-356 152-211 (336)
174 cd02932 OYE_YqiM_FMN Old yello 42.1 3.3E+02 0.0072 29.1 12.3 67 288-361 36-104 (336)
175 cd04735 OYE_like_4_FMN Old yel 41.8 2E+02 0.0044 31.1 10.7 29 331-361 77-105 (353)
176 COG2342 Predicted extracellula 41.5 4.4E+02 0.0096 27.7 12.1 123 284-442 29-151 (300)
177 PLN02803 beta-amylase 41.0 79 0.0017 35.9 7.2 63 285-360 107-172 (548)
178 PRK05660 HemN family oxidoredu 40.7 51 0.0011 36.1 5.8 64 289-360 108-172 (378)
179 cd07944 DRE_TIM_HOA_like 4-hyd 40.5 3.6E+02 0.0078 27.9 11.8 91 288-454 85-176 (266)
180 smart00052 EAL Putative diguan 40.4 29 0.00063 34.5 3.6 74 283-357 131-215 (241)
181 COG0826 Collagenase and relate 40.1 81 0.0017 34.2 7.1 56 282-352 14-69 (347)
182 cd05014 SIS_Kpsf KpsF-like pro 39.7 71 0.0015 28.5 5.8 59 292-350 20-79 (128)
183 cd04734 OYE_like_3_FMN Old yel 39.2 2.3E+02 0.0051 30.5 10.6 67 287-361 35-104 (343)
184 cd02930 DCR_FMN 2,4-dienoyl-Co 39.1 2.4E+02 0.0053 30.4 10.8 70 286-360 34-103 (353)
185 PRK05939 hypothetical protein; 38.9 77 0.0017 34.9 6.9 61 293-354 105-170 (397)
186 PRK13384 delta-aminolevulinic 38.8 1.6E+02 0.0034 31.4 8.6 100 284-434 60-164 (322)
187 cd03412 CbiK_N Anaerobic cobal 38.7 41 0.00088 30.8 4.0 60 284-343 55-125 (127)
188 PF02903 Alpha-amylase_N: Alph 37.8 56 0.0012 29.3 4.7 45 105-149 53-101 (120)
189 TIGR01211 ELP3 histone acetylt 37.2 56 0.0012 37.5 5.6 64 288-359 206-269 (522)
190 PF07071 DUF1341: Protein of u 37.1 92 0.002 30.9 6.2 44 287-348 137-180 (218)
191 PLN02801 beta-amylase 36.8 94 0.002 35.2 7.0 65 283-360 35-102 (517)
192 TIGR00542 hxl6Piso_put hexulos 35.5 75 0.0016 32.9 5.9 53 286-349 17-69 (279)
193 TIGR03586 PseI pseudaminic aci 35.3 1E+02 0.0022 33.2 6.8 72 280-351 12-96 (327)
194 PRK13347 coproporphyrinogen II 35.1 67 0.0014 36.1 5.8 65 288-360 152-217 (453)
195 PF09081 DUF1921: Domain of un 34.8 1.2E+02 0.0026 22.7 5.0 35 622-656 14-51 (51)
196 cd04823 ALAD_PBGS_aspartate_ri 34.7 1.6E+02 0.0035 31.3 8.0 100 284-434 53-159 (320)
197 TIGR00538 hemN oxygen-independ 34.5 62 0.0014 36.3 5.4 65 288-360 151-216 (455)
198 PF03644 Glyco_hydro_85: Glyco 34.3 69 0.0015 34.2 5.4 19 336-354 46-64 (311)
199 PRK05904 coproporphyrinogen II 34.3 70 0.0015 34.7 5.6 64 288-359 103-167 (353)
200 PRK13561 putative diguanylate 34.2 58 0.0012 38.2 5.3 74 282-356 531-615 (651)
201 PRK09936 hypothetical protein; 34.1 1.2E+02 0.0026 31.9 6.8 58 284-355 37-95 (296)
202 PRK09997 hydroxypyruvate isome 34.0 1.1E+02 0.0025 31.1 6.9 20 287-306 17-36 (258)
203 PRK08195 4-hyroxy-2-oxovalerat 33.7 4.6E+02 0.0099 28.2 11.7 102 289-466 92-198 (337)
204 cd00384 ALAD_PBGS Porphobilino 32.7 2.3E+02 0.0049 30.2 8.6 67 284-359 50-118 (314)
205 PLN02905 beta-amylase 32.4 1.2E+02 0.0027 35.1 7.1 65 283-360 284-351 (702)
206 PF10297 Hap4_Hap_bind: Minima 32.1 29 0.00064 20.3 1.1 10 84-93 2-11 (17)
207 PRK09249 coproporphyrinogen II 31.1 90 0.002 35.1 6.0 65 288-360 151-216 (453)
208 PLN02389 biotin synthase 30.7 1.2E+02 0.0026 33.3 6.7 60 288-356 178-237 (379)
209 PRK10060 RNase II stability mo 30.7 36 0.00078 40.2 2.8 74 282-356 538-622 (663)
210 PLN00197 beta-amylase; Provisi 30.4 1.4E+02 0.003 34.2 7.1 65 283-360 125-192 (573)
211 cd00287 ribokinase_pfkB_like r 30.2 77 0.0017 30.2 4.7 50 293-355 45-94 (196)
212 TIGR03217 4OH_2_O_val_ald 4-hy 30.2 4.8E+02 0.01 28.1 11.0 102 289-466 91-197 (333)
213 PLN02161 beta-amylase 30.1 1.5E+02 0.0034 33.5 7.3 65 283-360 115-182 (531)
214 PRK11059 regulatory protein Cs 30.0 64 0.0014 37.9 4.8 75 282-357 530-615 (640)
215 cd04724 Tryptophan_synthase_al 29.9 1.1E+02 0.0024 31.2 5.9 49 286-356 92-140 (242)
216 PRK13397 3-deoxy-7-phosphohept 29.6 6.5E+02 0.014 26.0 11.6 63 282-358 133-195 (250)
217 PRK08446 coproporphyrinogen II 29.3 1.2E+02 0.0026 32.8 6.4 64 288-359 98-162 (350)
218 PF04914 DltD_C: DltD C-termin 28.8 93 0.002 28.7 4.6 55 332-431 36-90 (130)
219 PRK08599 coproporphyrinogen II 28.7 99 0.0021 33.7 5.7 65 288-360 100-165 (377)
220 TIGR03471 HpnJ hopanoid biosyn 28.7 1E+02 0.0022 34.8 5.9 62 288-357 287-348 (472)
221 PRK07379 coproporphyrinogen II 28.6 90 0.002 34.4 5.3 65 288-360 115-180 (400)
222 PLN02705 beta-amylase 28.5 1.5E+02 0.0033 34.3 6.9 65 283-360 266-333 (681)
223 PF13407 Peripla_BP_4: Peripla 28.4 1.3E+02 0.0028 30.0 6.2 48 281-350 38-85 (257)
224 COG0520 csdA Selenocysteine ly 28.3 53 0.0011 36.4 3.4 60 293-353 131-200 (405)
225 cd06549 GH18_trifunctional GH1 28.2 1.1E+02 0.0025 32.1 5.8 47 410-456 84-136 (298)
226 TIGR03234 OH-pyruv-isom hydrox 27.9 1.7E+02 0.0036 29.7 6.9 19 287-305 16-34 (254)
227 PRK08255 salicylyl-CoA 5-hydro 27.8 3.7E+02 0.008 32.4 10.7 29 331-361 474-503 (765)
228 COG0041 PurE Phosphoribosylcar 27.8 67 0.0014 30.5 3.4 52 282-352 13-64 (162)
229 smart00518 AP2Ec AP endonuclea 27.7 1.6E+02 0.0035 30.1 6.8 53 286-350 11-63 (273)
230 PF00682 HMGL-like: HMGL-like 27.7 2.6E+02 0.0057 28.0 8.2 38 416-454 137-175 (237)
231 PRK12928 lipoyl synthase; Prov 27.7 2.3E+02 0.005 29.8 8.0 67 281-355 215-281 (290)
232 PRK08114 cystathionine beta-ly 27.6 71 0.0015 35.3 4.2 63 292-354 120-188 (395)
233 COG1874 LacA Beta-galactosidas 27.5 1E+02 0.0022 36.4 5.7 58 285-354 30-90 (673)
234 PRK13125 trpA tryptophan synth 27.3 1.8E+02 0.0038 29.7 6.9 52 285-355 88-139 (244)
235 PF01791 DeoC: DeoC/LacD famil 27.2 49 0.0011 33.5 2.7 57 288-355 79-135 (236)
236 PRK06294 coproporphyrinogen II 27.1 1E+02 0.0022 33.6 5.4 65 288-360 103-168 (370)
237 smart00733 Mterf Mitochondrial 27.0 47 0.001 21.1 1.8 17 284-300 15-31 (31)
238 cd03413 CbiK_C Anaerobic cobal 26.9 59 0.0013 28.6 2.8 28 287-314 44-71 (103)
239 PRK09283 delta-aminolevulinic 26.8 3.1E+02 0.0066 29.4 8.4 103 284-434 58-162 (323)
240 cd00019 AP2Ec AP endonuclease 26.8 1.8E+02 0.0039 30.0 7.0 53 286-350 11-64 (279)
241 PF12031 DUF3518: Domain of un 26.8 18 0.00039 36.9 -0.5 50 61-112 93-151 (257)
242 cd07940 DRE_TIM_IPMS 2-isoprop 26.7 2.7E+02 0.0058 28.7 8.2 38 416-454 143-181 (268)
243 cd04824 eu_ALAD_PBGS_cysteine_ 26.6 3.3E+02 0.0071 29.1 8.6 64 284-359 50-121 (320)
244 PRK05967 cystathionine beta-ly 25.9 86 0.0019 34.6 4.5 28 328-355 162-189 (395)
245 TIGR00510 lipA lipoate synthas 25.8 2.6E+02 0.0057 29.7 8.0 67 281-355 218-284 (302)
246 cd06543 GH18_PF-ChiA-like PF-C 25.6 4.6E+02 0.0099 27.7 9.7 94 292-441 19-115 (294)
247 cd00945 Aldolase_Class_I Class 25.6 1.9E+02 0.0041 27.6 6.6 59 284-357 64-125 (201)
248 TIGR03581 EF_0839 conserved hy 25.5 1.4E+02 0.003 30.1 5.3 24 285-308 135-158 (236)
249 KOG0259 Tyrosine aminotransfer 25.1 1.6E+02 0.0034 32.3 6.0 78 281-359 133-246 (447)
250 PF03370 CBM_21: Putative phos 25.0 84 0.0018 28.1 3.5 25 129-153 85-112 (113)
251 PRK13523 NADPH dehydrogenase N 25.0 3.2E+02 0.007 29.4 8.6 70 285-360 37-107 (337)
252 cd07948 DRE_TIM_HCS Saccharomy 24.5 4E+02 0.0087 27.6 8.9 100 291-455 77-180 (262)
253 COG1242 Predicted Fe-S oxidore 24.5 2.6E+02 0.0057 29.4 7.2 53 332-439 168-220 (312)
254 PRK09028 cystathionine beta-ly 24.3 94 0.002 34.3 4.5 28 328-355 159-186 (394)
255 cd03409 Chelatase_Class_II Cla 23.8 79 0.0017 26.9 3.1 25 287-311 47-71 (101)
256 PRK13209 L-xylulose 5-phosphat 23.7 1.6E+02 0.0036 30.3 6.0 53 287-350 23-75 (283)
257 TIGR03127 RuMP_HxlB 6-phospho 23.6 2.1E+02 0.0046 27.3 6.4 55 292-350 50-104 (179)
258 TIGR03569 NeuB_NnaB N-acetylne 23.4 2.1E+02 0.0046 30.8 6.8 72 280-351 11-95 (329)
259 PRK14581 hmsF outer membrane N 23.4 9.8E+02 0.021 28.5 12.7 127 287-436 336-464 (672)
260 cd01335 Radical_SAM Radical SA 23.3 1E+02 0.0022 28.9 4.1 64 288-358 88-151 (204)
261 PRK05799 coproporphyrinogen II 23.3 1.5E+02 0.0033 32.2 5.9 65 288-360 99-164 (374)
262 PF15640 Tox-MPTase4: Metallop 23.3 77 0.0017 28.9 2.8 27 326-352 16-42 (132)
263 PRK12595 bifunctional 3-deoxy- 23.2 2.8E+02 0.0061 30.2 7.8 60 283-352 130-189 (360)
264 TIGR01496 DHPS dihydropteroate 23.2 3.4E+02 0.0074 28.0 8.1 58 283-352 21-82 (257)
265 TIGR02006 IscS cysteine desulf 23.0 1.6E+02 0.0035 32.2 6.0 70 285-354 103-181 (402)
266 PRK08247 cystathionine gamma-s 22.7 96 0.0021 33.6 4.1 27 328-354 149-175 (366)
267 COG0134 TrpC Indole-3-glycerol 22.7 92 0.002 32.2 3.7 22 331-352 142-163 (254)
268 TIGR01324 cysta_beta_ly_B cyst 22.5 1.1E+02 0.0023 33.5 4.5 28 328-355 148-175 (377)
269 TIGR02109 PQQ_syn_pqqE coenzym 22.4 3.2E+02 0.0068 29.4 8.1 61 288-355 95-155 (358)
270 PF03714 PUD: Bacterial pullan 22.4 2.8E+02 0.0061 24.1 6.3 38 117-157 45-82 (103)
271 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.3 1.7E+02 0.0036 25.9 5.0 59 291-350 18-78 (126)
272 PF00834 Ribul_P_3_epim: Ribul 22.2 1.7E+02 0.0036 29.1 5.3 70 285-355 92-176 (201)
273 PLN02721 threonine aldolase 22.0 1.6E+02 0.0036 31.0 5.8 59 283-354 119-180 (353)
274 cd02876 GH18_SI-CLP Stabilin-1 22.0 91 0.002 33.1 3.7 29 410-438 88-116 (318)
275 PRK07050 cystathionine beta-ly 21.9 1.1E+02 0.0024 33.6 4.5 29 328-356 163-191 (394)
276 TIGR00262 trpA tryptophan synt 21.8 2.9E+02 0.0063 28.5 7.2 49 286-356 103-151 (256)
277 cd05017 SIS_PGI_PMI_1 The memb 21.7 2.3E+02 0.0051 25.1 5.8 67 281-350 8-75 (119)
278 PLN02808 alpha-galactosidase 21.7 1.6E+02 0.0034 32.5 5.4 60 284-348 48-113 (386)
279 cd06548 GH18_chitinase The GH1 21.6 1E+02 0.0022 32.8 4.0 30 410-439 105-134 (322)
280 cd01299 Met_dep_hydrolase_A Me 21.5 3.7E+02 0.008 28.4 8.4 62 283-351 118-179 (342)
281 cd04795 SIS SIS domain. SIS (S 21.5 92 0.002 25.4 2.9 66 285-350 10-79 (87)
282 cd02933 OYE_like_FMN Old yello 21.3 7.7E+02 0.017 26.5 10.7 29 331-361 76-104 (338)
283 COG1082 IolE Sugar phosphate i 20.9 1.8E+02 0.004 29.5 5.7 50 285-351 15-64 (274)
284 PRK06582 coproporphyrinogen II 20.9 1.9E+02 0.0041 31.8 6.0 65 288-360 111-175 (390)
285 PRK09057 coproporphyrinogen II 20.8 1.6E+02 0.0034 32.3 5.3 64 289-360 105-168 (380)
286 PF01261 AP_endonuc_2: Xylose 20.8 44 0.00094 32.3 0.9 45 291-350 1-45 (213)
287 COG1891 Uncharacterized protei 20.8 48 0.001 32.1 1.1 26 329-354 164-189 (235)
288 smart00729 Elp3 Elongator prot 20.7 1.8E+02 0.004 27.6 5.3 63 288-358 100-163 (216)
289 TIGR01814 kynureninase kynuren 20.6 76 0.0016 34.8 2.8 31 323-353 179-209 (406)
290 PRK04302 triosephosphate isome 20.6 1.9E+02 0.0042 28.9 5.6 44 291-352 78-121 (223)
291 cd00615 Orn_deC_like Ornithine 20.6 67 0.0014 33.6 2.3 27 328-354 166-192 (294)
292 COG2200 Rtn c-di-GMP phosphodi 20.5 1.6E+02 0.0034 30.3 5.0 67 283-355 134-216 (256)
293 KOG4175 Tryptophan synthase al 20.4 2.3E+02 0.0051 28.2 5.7 67 281-355 76-158 (268)
294 PRK09776 putative diguanylate 20.3 1.1E+02 0.0024 38.0 4.6 69 282-356 971-1055(1092)
295 COG3669 Alpha-L-fucosidase [Ca 20.3 1.2E+03 0.026 25.9 11.6 69 289-363 58-128 (430)
296 PRK00923 sirohydrochlorin coba 20.3 1.5E+02 0.0031 26.8 4.2 54 286-339 47-120 (126)
297 cd07939 DRE_TIM_NifV Streptomy 20.3 6.6E+02 0.014 25.7 9.6 39 416-455 139-178 (259)
298 PRK11829 biofilm formation reg 20.2 1.5E+02 0.0031 34.9 5.3 74 282-356 536-620 (660)
299 PLN02428 lipoic acid synthase 20.1 3.4E+02 0.0074 29.5 7.6 67 281-355 258-324 (349)
300 PRK09852 cryptic 6-phospho-bet 20.1 1.8E+02 0.0039 33.0 5.7 64 284-353 70-133 (474)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.1e-130 Score=1105.12 Aligned_cols=657 Identities=77% Similarity=1.331 Sum_probs=613.6
Q ss_pred CcccCCCCCCCcCCCCccccccccccccccccceeeccceEEEEeeeEEEEEEeCCCCCceEEEEecCCCCCeEEEeeee
Q 006158 1 MILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVVHWGVC 80 (658)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lhWg~~ 80 (658)
|++|+|+++++.|++++.+.|+.+++++|++|||++||.|+++|||+|+|+||||++++|++|+|+||+||+||||||||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~ 316 (894)
T PLN02784 237 ILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVC 316 (894)
T ss_pred hhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccCCCCCCCCccccccccccccccccCCCCceEEEEecCCceeeeEEEEEcCCccccccCCCcceecCCCCCC
Q 006158 81 RDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSC 160 (658)
Q Consensus 81 ~~~~~~W~~p~~~~p~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~G~~f~v~~~~~~~ 160 (658)
|++++||++||+++||.++++|++||||||+++++++++++.|++|+.++||+|||+.++++|||++|+||||||+.+++
T Consensus 317 k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~ 396 (894)
T PLN02784 317 KDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSS 396 (894)
T ss_pred cCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeCCchhc
Confidence 99999999999999555556899999999999999999999999999999999999988999999999999999999999
Q ss_pred CCcccccccccCCCchhhhhhhhhhhhhhhhhHhhhcccccccccccccccccchhhhhhhhhhhhhHHhhhhcccCCCC
Q 006158 161 LPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYSIFRTTAPT 240 (658)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~av~Yqif~drf~~ 240 (658)
.+.+...-+. .+..+++.++|++++|+++||++||+||+++++++.+++..+..|..++.+++++.|..|.||+...+.
T Consensus 397 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (894)
T PLN02784 397 LPTQTEQGQS-EGKTAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYSIFRSTIPT 475 (894)
T ss_pred cccccccccc-ccccccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhheeeccCCCC
Confidence 9875543333 377889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccC-CCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcc
Q 006158 241 FFEEAAVELEE-SKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPR 319 (658)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~ 319 (658)
..+....+.+. .+|+.+...++..+|++++|+|+|+++.+|+++++|+++||||++||||+|||+|++++.++|||++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~ 555 (894)
T PLN02784 476 FSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPK 555 (894)
T ss_pred cChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcc
Confidence 88887777654 56887888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 006158 320 DLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD 399 (658)
Q Consensus 320 Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~ 399 (658)
|||.+|++|||.+||++||++||++||+||+|+|+||++..+...++.++.|.+..+|.++....+++.|.+.++..++.
T Consensus 556 D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgd 635 (894)
T PLN02784 556 DLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD 635 (894)
T ss_pred cccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCccc
Confidence 99999999999999999999999999999999999999987766677788888778898887777777888777777888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHHHhCCCEEEEcccCCCCcccccCCCcch
Q 006158 400 NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQD 479 (658)
Q Consensus 400 ~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~~p~~lvGE~w~~~~~~~g~m~y~~~ 479 (658)
+|..+||||++||+||++|.++++||++++||||||||+|++++..|+++++++.+|.|+|||+|++..|..++|+|+++
T Consensus 636 df~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd 715 (894)
T PLN02784 636 NFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQD 715 (894)
T ss_pred ccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCch
Confidence 89999999999999999999999999989999999999999999999999999999999999999997776789999999
Q ss_pred hhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCChhH
Q 006158 480 AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGR 559 (658)
Q Consensus 480 ~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~~ 559 (658)
.+++.+.+|+...++..++|||++++++..++.+++.|++.+..+..+++.+.+|..+|+|++||||.+....+.++..+
T Consensus 716 ~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k 795 (894)
T PLN02784 716 AHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGK 795 (894)
T ss_pred hHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccc
Confidence 99999999999888888999999999999998878889998888788889999999999999999999988888778888
Q ss_pred HHHHHHHHHhCCCeeEEEcCchhHHHHHHHHHHHHHHHhCccccCCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCC
Q 006158 560 EMQGYAYILTHPGTPSVFYDHIFSHYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSG 639 (658)
Q Consensus 560 ~~lA~allltlpGiP~IYyGdE~~Wl~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~a~~r~~~vlvvvnn~~~~~~~~ 639 (658)
..+|||++||.||+|||||||.|+.+.+.|++||.+|+.+-+.++..++++.++.++|+...+++++|.|.+.+..|+++
T Consensus 796 ~~~AYAyILthpG~PcVFy~h~y~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~ 875 (894)
T PLN02784 796 EMQGYAYILTHPGTPAVFYDHIFSHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNG 875 (894)
T ss_pred hhhHHHHHHcCCCcceEEehhhhhhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCC
Confidence 89999999999999999999988547888999999999999999999999999999999999999999999999998666
Q ss_pred CCCeEEEEcCCCeEEEEcC
Q 006158 640 SQNWSFVTEGRDYKVWEAA 658 (658)
Q Consensus 640 ~~~~~~~~~g~~~~vw~~~ 658 (658)
+++|++.++|.+|+||++|
T Consensus 876 ~~~~~~~~sG~~yavW~k~ 894 (894)
T PLN02784 876 PQNWSVALEGQDYKVWETS 894 (894)
T ss_pred CCceEEEEecCCeEEEeCC
Confidence 6789999999999999986
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=4e-72 Score=603.63 Aligned_cols=386 Identities=52% Similarity=1.056 Sum_probs=342.2
Q ss_pred cceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 006158 265 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 344 (658)
Q Consensus 265 ~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~ 344 (658)
+.++++|+|+|+++. +.++++|+++||||++||||+|||+|++++.++|||++.|||.+||+|||.+||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 456999999999874 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccccccCCCCCCCCCcccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 006158 345 GMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 423 (658)
Q Consensus 345 GikVIlD~V~NHt~~~~~~~~g~~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~ 423 (658)
||+||+|+|+||++.......+.|+.|.+. .+|+......+. .+.++...+..+..+||||++||+||++|+++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 999999999999977666666777777663 456543322211 1223345566788999999999999999999999
Q ss_pred HHHhhcCccEEEEcccCCCchHHHHHHHHHhCCCEEEEcccCCCCcc--cccCCCcchhhHHHHHHHHHhcCCCccccCc
Q 006158 424 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 501 (658)
Q Consensus 424 ~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~~p~~lvGE~w~~~~~~--~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf 501 (658)
||++++||||||+|+|++++..|+++++++.+|.|+|||+|++..+. .+.++|+++.+++.+.+|+...++..++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88877999999999999999999999999988889999999885432 3459999988899999999987778899999
Q ss_pred hhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCChhHHHHHHHHHHhCCCeeEEEcCch
Q 006158 502 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHI 581 (658)
Q Consensus 502 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~~~~lA~allltlpGiP~IYyGdE 581 (658)
++...+.+++ .++.+++.+..+..+.+.+.+|.++|+|++||||+|+.+.+.++..+.++|+|++||+||+||||||+-
T Consensus 246 ~l~~~l~~a~-~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 246 TTKGILQEAV-KGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred HHHHHHHHHH-hhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 9999999998 456788888777677778889999999999999999999888788899999999999999999999999
Q ss_pred hHH---HHHHHHHHHHHHHhCccccCCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEEc
Q 006158 582 FSH---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 657 (658)
Q Consensus 582 ~~W---l~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~a~~r~~~vlvvvnn~~~~~~~~~~~~~~~~~g~~~~vw~~ 657 (658)
|+| +.++|++|++|||+++++++|+++++.+++++|+...+++++|-+++....|+ ..+|++.++|.+|+||++
T Consensus 325 ~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p~--~~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 325 YDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCPS--GREWTLATSGHRYAVWHK 401 (401)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCCC--CCCceEEEecCceEEeeC
Confidence 998 99999999999999999999999999999999999999999999999988884 246999999999999985
No 3
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3e-72 Score=611.49 Aligned_cols=387 Identities=47% Similarity=0.977 Sum_probs=331.1
Q ss_pred ceeEeeeeeccC-CCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC-CCCCCHHHHHHHHHHHHH
Q 006158 266 FEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFHD 343 (658)
Q Consensus 266 y~~~~~~F~W~~-~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD-p~~Gt~edlk~LV~~aH~ 343 (658)
.++++|+|+|++ ...||+++||++|||||++||||+|||+|++++.++|||++.|||++| ++|||.+||++||++||+
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~ 103 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHG 103 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHH
Confidence 358999999998 456899999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCEEEEEeccccccCCCCCCCCCcccCCC-----CCCCCCCcccCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 006158 344 VGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKD 417 (658)
Q Consensus 344 ~GikVIlD~V~NHt~~~~~~~~g~~~~~~g-----~~~w~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdln~~n~~vr~~ 417 (658)
+|||||+|+|+||++.++....+.|..|.+ ..+|+..........|. +.+++.++.++.++||||++||+||++
T Consensus 104 ~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~ 183 (428)
T PLN00196 104 KGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRE 183 (428)
T ss_pred CCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHH
Confidence 999999999999999887654444433322 14554332222222232 234456777889999999999999999
Q ss_pred HHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHHHhCCCEEEEcccCCCCc-ccccCCCcchhhHHHHHHHHHhcCCC-
Q 006158 418 IKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSY-TYGEMDHNQDAHRQRIIDWINAASGT- 495 (658)
Q Consensus 418 i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~~p~~lvGE~w~~~~~-~~g~m~y~~~~~~~~i~~~~~~~~~~- 495 (658)
|+++++||++++||||||+|+|++++..|++.++++.+|.|+|||+|++.+| ..+...|.++.+++.+.+|+...++.
T Consensus 184 l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~ 263 (428)
T PLN00196 184 LIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAA 263 (428)
T ss_pred HHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCcc
Confidence 9999999988899999999999999999999999988899999999998654 34567888888888999999866543
Q ss_pred --ccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCChhHHHHHHHHHHhCCCe
Q 006158 496 --AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGT 573 (658)
Q Consensus 496 --~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~~~~lA~allltlpGi 573 (658)
.+.|||++..++..++. ++.+++++..+....+.+.+|..+|||++||||.|+.+.+..+..+.++|+|++||+||+
T Consensus 264 ~~~~~fDF~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 264 SPATVFDFTTKGILNVAVE-GELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred CcceeecccchHHHHHHhc-CCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 45899999876666654 356666665555556677899999999999999999998877778889999999999999
Q ss_pred eEEEcCchhHH-HHHHHHHHHHHHHhCccccCCCeeEEeecCCEEEEEECCEEEEEEeCC----CCCCCCCCCCeEEEEc
Q 006158 574 PSVFYDHIFSH-YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPG----HYEPPSGSQNWSFVTE 648 (658)
Q Consensus 574 P~IYyGdE~~W-l~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~a~~r~~~vlvvvnn~----~~~~~~~~~~~~~~~~ 648 (658)
||||||+-|+| +.+.|++|+++||++++++.|+++++.+++++|+++|+++++|.||+. +..| .+|++.++
T Consensus 343 P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 418 (428)
T PLN00196 343 PCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIP----EGFQVVAH 418 (428)
T ss_pred ceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCc----ccceEEEe
Confidence 99999999999 999999999999999999999999999999999999999999999995 4444 45999999
Q ss_pred CCCeEEEEc
Q 006158 649 GRDYKVWEA 657 (658)
Q Consensus 649 g~~~~vw~~ 657 (658)
|.+|+||++
T Consensus 419 g~~~~~w~~ 427 (428)
T PLN00196 419 GNGYAVWEK 427 (428)
T ss_pred cCCeEEEec
Confidence 999999986
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=7e-71 Score=628.25 Aligned_cols=424 Identities=16% Similarity=0.207 Sum_probs=309.0
Q ss_pred eEEEEecC--CceeeeEEEEEcC-CccccccCCCcceecCCCCCCCCcccccccccCCCchhhhhhhhhhhhhhhhhHhh
Q 006158 119 CSRLFTVD--EEFAGFLFVLKLN-ENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEI 195 (658)
Q Consensus 119 ~~~~~~~~--~~~~~~~Fvl~~~-~~~W~k~~G~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (658)
..++|++. .++..|.|.|... +..||..+|..-+.+
T Consensus 63 ~~~~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~~~~----------------------------------------- 101 (598)
T PRK10785 63 WRASLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSRRPP----------------------------------------- 101 (598)
T ss_pred EEEEEEcCCCCceEEEEEEEEeCCEEEEEcCCceeeccC-----------------------------------------
Confidence 56677764 7789999999665 456888876543111
Q ss_pred hcccccccccccccccccchhhhhhhhhhhhh--HHhhhhcccCCCCCCccccccccC------CCCCCCCCCCCCCcce
Q 006158 196 RNLVSDFSSDISRKTKSKEAQKSILLEIEKLA--AEAYSIFRTTAPTFFEEAAVELEE------SKPPAKISPGTGTGFE 267 (658)
Q Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--av~Yqif~drf~~~~~~~~~~~~~------~~~~~~~~~~~~~~y~ 267 (658)
.+..+|+.+.....+.|. +|+||||||||++|++++...... +.+......+....+.
T Consensus 102 --------------~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 167 (598)
T PRK10785 102 --------------ARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQ 167 (598)
T ss_pred --------------CCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccc
Confidence 011235555555556664 999999999999999876543210 0110000111111111
Q ss_pred eEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 006158 268 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347 (658)
Q Consensus 268 ~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik 347 (658)
.....| +||||+||++||||||+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||
T Consensus 168 ~~~~~f------~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGik 241 (598)
T PRK10785 168 AGGSTF------YGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMR 241 (598)
T ss_pred cccccc------cCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCE
Confidence 112223 49999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCCC-------CcccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006158 348 ILGDVVLNHRCAHYQNQNG-------VWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 348 VIlD~V~NHt~~~~~~~~g-------~~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
||||+|+||||.+|++++. .+..-.++ .+|+ .|...+.+.+|.++..||+||++||+||++|+
T Consensus 242 VilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf---------~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~ 312 (598)
T PRK10785 242 LVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWY---------SFSDDGRALDWLGYASLPKLDFQSEEVVNEIY 312 (598)
T ss_pred EEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceee---------EECCCCCcCCcCCCCcCccccCCCHHHHHHHH
Confidence 9999999999999886421 11000000 1222 22333445677788999999999999999999
Q ss_pred H----HHHHHHhh-cCccEEEEcccCCCc--------hHHHHHHHH---HhCCC-EEEEcccCCC-Cccc-----ccCCC
Q 006158 420 E----WLCWLRNE-IGYDGWRLDFVRGFW--------GGYVKDYLE---ATEPY-FAVGEYWDSL-SYTY-----GEMDH 476 (658)
Q Consensus 420 ~----~l~~w~~~-~GIDGfRlD~a~~~~--------~~~~~~~~~---~~~p~-~lvGE~w~~~-~~~~-----g~m~y 476 (658)
+ ++++|+++ +||||||||+|++++ .+||+++.+ +.+|+ +++||+|.+. .|+. +.|||
T Consensus 313 ~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny 392 (598)
T PRK10785 313 RGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNY 392 (598)
T ss_pred hhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccc
Confidence 5 89999976 999999999999874 467877654 45787 8999999864 3433 45777
Q ss_pred cchhhHHHHHHHHHhcCCCc--cccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCC----cceeecccCCcCCcc
Q 006158 477 NQDAHRQRIIDWINAASGTA--GAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS----RAVTFIENHDTGSTQ 550 (658)
Q Consensus 477 ~~~~~~~~i~~~~~~~~~~~--~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~----~~vnfl~nHDt~R~~ 550 (658)
.. +...++.|+....... ...+ . ..+...+ ..+.. .+|. .++||++|||++|+.
T Consensus 393 ~~--f~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~l-----~~~~~----------~~~~~~~~~~~n~l~nHD~~R~~ 452 (598)
T PRK10785 393 RG--FAFPLRAFLANTDIAYHPQQID--A-QTCAAWM-----DEYRA----------GLPHQQQLRQFNQLDSHDTARFK 452 (598)
T ss_pred hh--hhhHHHHHhhccccccCccCCC--H-HHHHHHH-----HHHHH----------hCCHHHHHHhhhccCCCccchhh
Confidence 42 3456777765321000 0011 0 0011110 01111 0111 357999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhCCCeeEEEcCchh--------------HH--------HHHHHHHHHHHHHhCccccCCCee
Q 006158 551 GHWRFPGGREMQGYAYILTHPGTPSVFYDHIF--------------SH--------YRQEIEALLSVRKRNKIHCRSRVE 608 (658)
Q Consensus 551 ~~~~~~~~~~~lA~allltlpGiP~IYyGdE~--------------~W--------l~~~~~~Li~lRk~~pal~~G~~~ 608 (658)
+.++.+..+.++|++++||+||+||||||||+ +| ++++||+||+|||++|+|+.|+++
T Consensus 453 ~~~~~~~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~ 532 (598)
T PRK10785 453 TLLGGDKARMPLALVWLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQ 532 (598)
T ss_pred hhhCCCHHHHHHHHHHHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEE
Confidence 98876788999999999999999999999995 36 999999999999999999999999
Q ss_pred EEeecCCEEEEEE---CCEEEEEEeCC
Q 006158 609 IVKAERDVYAAII---DEKVAMKLGPG 632 (658)
Q Consensus 609 ~l~~~~~v~a~~r---~~~vlvvvnn~ 632 (658)
.+..++++++|.| +++++|++|++
T Consensus 533 ~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 533 VLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred EEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 9999999999988 57899999988
No 5
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=8.6e-62 Score=552.90 Aligned_cols=363 Identities=18% Similarity=0.246 Sum_probs=257.7
Q ss_pred HHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCC
Q 006158 228 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 307 (658)
Q Consensus 228 av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi 307 (658)
++|||||||||++|+++++..- ++...+. .....| +||||+||++|||||++||||+|||+||
T Consensus 190 aviYqI~~DRF~nGd~~Nd~~~------g~~~d~~-----~~~~~f------~GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLTDRFENGDPSNDHSY------GRHKDGM-----QEIGTF------HGGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEehhhhcCCCccccccc------CcCCCCc-----cccCcc------cCCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 9999999999999998765431 1111110 011234 3999999999999999999999999999
Q ss_pred CCCC---------------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCC------CCCC
Q 006158 308 TESV---------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ------NQNG 366 (658)
Q Consensus 308 ~~~~---------------s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~------~~~g 366 (658)
+++. ++|||++.||+.|||+|||++||++||++||++|||||||+|+||++..+. ++..
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 9872 679999999999999999999999999999999999999999999996421 1111
Q ss_pred Cc--------ccCCCCCCCCCCcccCCC-----CCCCCCCCCCCC----------------------CCCCCCCCCCCC-
Q 006158 367 VW--------NIFGGRLNWDDRAVVADD-----PHFQGRGNKSSG----------------------DNFHAAPNIDHS- 410 (658)
Q Consensus 367 ~~--------~~~~g~~~w~~~~~~~~~-----~~f~~~~~~~~~----------------------~~~~~lpdln~~- 410 (658)
.+ .......+|.+....... ..|........| +....|||||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~ 412 (683)
T PRK09505 333 LYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTES 412 (683)
T ss_pred hhhhccccccccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccC
Confidence 00 000000223221100000 011111000111 123568888886
Q ss_pred ----------------------CHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHHHh----------CC--
Q 006158 411 ----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT----------EP-- 456 (658)
Q Consensus 411 ----------------------n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~----------~p-- 456 (658)
||+||++|++++++|++++||||||+|+|+|++.+||+++.+++ +|
T Consensus 413 ~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~ 492 (683)
T PRK09505 413 TQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDK 492 (683)
T ss_pred ccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45999999999999998899999999999999999988765432 22
Q ss_pred -----C-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhh-hhhhhhhhhCCCCCC
Q 006158 457 -----Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC-EYWRLSDEKGKPPGV 529 (658)
Q Consensus 457 -----~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~-~~~~l~~~~~~~~~~ 529 (658)
. +++||+|..... ...|.. .++++++||++...+..++... .+..+..... ..
T Consensus 493 ~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~ 552 (683)
T PRK09505 493 ALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EK 552 (683)
T ss_pred ccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hh
Confidence 3 799999975311 122322 3578889998876554432211 1111111110 00
Q ss_pred cccCCCcceeecccCCcCCccCCCCCChhHHHHHHHHHHhCCCeeEEEcCchh-------------------HH------
Q 006158 530 VGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-------------------SH------ 584 (658)
Q Consensus 530 ~~~~p~~~vnfl~nHDt~R~~~~~~~~~~~~~lA~allltlpGiP~IYyGdE~-------------------~W------ 584 (658)
. .+...++|++|||++|+.+... +..+.++|++++||+||+|+||||+|+ +|
T Consensus 553 ~--~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~ 629 (683)
T PRK09505 553 L--QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGK 629 (683)
T ss_pred c--CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccc
Confidence 0 1234678999999999988776 347889999999999999999999984 36
Q ss_pred ---HHHHHHHHHHHHHhCccccCCCeeEEeecCCEEEEEE---CCEEEEEEeC
Q 006158 585 ---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGP 631 (658)
Q Consensus 585 ---l~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~a~~r---~~~vlvvvnn 631 (658)
++++||+|++||+++|+|+.|+++.+. ++++|+|.| +++++|++|-
T Consensus 630 ~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 630 SAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred hHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 899999999999999999999998874 568999988 5677777763
No 6
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.8e-60 Score=531.94 Aligned_cols=349 Identities=27% Similarity=0.466 Sum_probs=264.9
Q ss_pred eeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCC---CCCCCcccCC---------CCCCCCCCHHHH
Q 006158 267 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDEL 334 (658)
Q Consensus 267 ~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s---~~GYd~~Dy~---------~vDp~~Gt~edl 334 (658)
.+++|+|+|++..+|.+++||++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++||
T Consensus 4 ~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl 83 (479)
T PRK09441 4 GTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEEL 83 (479)
T ss_pred ceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHH
Confidence 4899999999887777888999999999999999999999999874 6999999999 799999999999
Q ss_pred HHHHHHHHHcCCEEEEEeccccccCCCC--CCC-------CCcccCCCC---CCCCCCccc-----C-----CCCCCCCC
Q 006158 335 KDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQN-------GVWNIFGGR---LNWDDRAVV-----A-----DDPHFQGR 392 (658)
Q Consensus 335 k~LV~~aH~~GikVIlD~V~NHt~~~~~--~~~-------g~~~~~~g~---~~w~~~~~~-----~-----~~~~f~~~ 392 (658)
|+||++||++|||||+|+|+|||+..+. ++. +..+.+... ..|.....+ . ....|...
T Consensus 84 ~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
T PRK09441 84 LNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGT 163 (479)
T ss_pred HHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCc
Confidence 9999999999999999999999996432 221 100111000 111110000 0 00001100
Q ss_pred ---------------CCCCCC----------CCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHH
Q 006158 393 ---------------GNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 447 (658)
Q Consensus 393 ---------------~~~~~~----------~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~ 447 (658)
.....| ..+..|||||++||+||++|+++++||++++||||||+|+|++++..||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~ 243 (479)
T PRK09441 164 DYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243 (479)
T ss_pred ccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHH
Confidence 000111 1345699999999999999999999999779999999999999999999
Q ss_pred HHHHHHh---C-CC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhh
Q 006158 448 KDYLEAT---E-PY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDE 522 (658)
Q Consensus 448 ~~~~~~~---~-p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~ 522 (658)
+++++++ . |. |++||+|.+. ...+..|+.......++|||++...+..++..+....+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~~ 309 (479)
T PRK09441 244 KEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRNI 309 (479)
T ss_pred HHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHhh
Confidence 9988774 2 45 8999999863 23466777654445679999999888888765443333333
Q ss_pred hCCCCCCcccCCCcceeecccCCcCCccCCCCCChh-HHHHHHHHHHhCC-CeeEEEcCchhHH--------HHHHHHHH
Q 006158 523 KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-REMQGYAYILTHP-GTPSVFYDHIFSH--------YRQEIEAL 592 (658)
Q Consensus 523 ~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~-~~~lA~allltlp-GiP~IYyGdE~~W--------l~~~~~~L 592 (658)
... ......|..+++|++|||++|+.+....... +.++|++++||+| |+|+||||+|+++ ++++|++|
T Consensus 310 ~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~L 387 (479)
T PRK09441 310 FDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKL 387 (479)
T ss_pred hCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHHH
Confidence 211 1122356678999999999999886542222 3589999999999 9999999999976 89999999
Q ss_pred HHHHHhCccccCCCeeEEeecCCEEEEEE-C----CEEEEEEeCCCC
Q 006158 593 LSVRKRNKIHCRSRVEIVKAERDVYAAII-D----EKVAMKLGPGHY 634 (658)
Q Consensus 593 i~lRk~~pal~~G~~~~l~~~~~v~a~~r-~----~~vlvvvnn~~~ 634 (658)
++||+++ +.|++..+..++++++|.| . +.++|++||++.
T Consensus 388 i~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~~ 431 (479)
T PRK09441 388 LLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGDA 431 (479)
T ss_pred HHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCCC
Confidence 9999985 4799999999999999988 2 358889988653
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=4.1e-58 Score=519.24 Aligned_cols=354 Identities=21% Similarity=0.257 Sum_probs=256.7
Q ss_pred hHHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCC
Q 006158 227 AAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPP 306 (658)
Q Consensus 227 ~av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~P 306 (658)
.+|+|||||+||++++.. .+|||+||+++||||++||||+|||+|
T Consensus 5 ~~viYqi~~~~f~d~~~~-----------------------------------~~Gdl~gi~~~Ldyl~~LGv~~i~L~P 49 (539)
T TIGR02456 5 DAVFYEVHVRSFFDSNGD-----------------------------------GIGDFPGLTSKLDYLKWLGVDALWLLP 49 (539)
T ss_pred cceEEEEehhHhhcCCCC-----------------------------------CccCHHHHHHhHHHHHHCCCCEEEECC
Confidence 388999999999875421 169999999999999999999999999
Q ss_pred CCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCC----CcccCCCCCCCCCCc
Q 006158 307 PTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG----VWNIFGGRLNWDDRA 381 (658)
Q Consensus 307 i~~~~s-~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g----~~~~~~g~~~w~~~~ 381 (658)
||++++ +|||++.||++|||+|||+++|++||++||++||+||||+|+|||+.+|+++.. ..+++.+.+.|.+..
T Consensus 50 i~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~ 129 (539)
T TIGR02456 50 FFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTD 129 (539)
T ss_pred CcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCC
Confidence 999985 799999999999999999999999999999999999999999999999976421 112222212222111
Q ss_pred ccCCCC--CCCC-C----------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC------
Q 006158 382 VVADDP--HFQG-R----------GNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF------ 442 (658)
Q Consensus 382 ~~~~~~--~f~~-~----------~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~------ 442 (658)
...... .|.+ . +.+.....+..+|+||++||+||++|++++++|+ ++||||||||+++++
T Consensus 130 ~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~ 208 (539)
T TIGR02456 130 EKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGT 208 (539)
T ss_pred cccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCC
Confidence 000000 0100 0 0000011347899999999999999999999999 699999999999865
Q ss_pred -------chHHHHHHHHH---hCCC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHh-cC-CCccccCchhhHHHHH
Q 006158 443 -------WGGYVKDYLEA---TEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-AS-GTAGAFDVTTKGILHS 509 (658)
Q Consensus 443 -------~~~~~~~~~~~---~~p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~-~~-~~~~~fdf~~~~~i~~ 509 (658)
..+||+++.+. .+|+ +++||.+.. ...+..|+.. .. ++.++|+|++...+..
T Consensus 209 ~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~ 273 (539)
T TIGR02456 209 SCENLPETHEFLKRLRKMVDREYPGRMLLAEANQW---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFM 273 (539)
T ss_pred ccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCC---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhc
Confidence 23577776554 4577 899997542 1234555532 12 5778899988655544
Q ss_pred HhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcC-------------------------------CccCCCCCChh
Q 006158 510 ALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG-------------------------------STQGHWRFPGG 558 (658)
Q Consensus 510 ~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~-------------------------------R~~~~~~~~~~ 558 (658)
++...+...+...+...... ..+...++|++|||+. |+.+.++.+..
T Consensus 274 ~l~~~~~~~l~~~l~~~~~~--~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~ 351 (539)
T TIGR02456 274 ALRREDRSPIIDILKETPDI--PDSCQWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRR 351 (539)
T ss_pred ccccCCHHHHHHHHHHhhhc--cCCCceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHH
Confidence 33333222222211110000 0122456899999994 44444444566
Q ss_pred HHHHHHHHHHhCCCeeEEEcCchhH------------------H------------------------------------
Q 006158 559 REMQGYAYILTHPGTPSVFYDHIFS------------------H------------------------------------ 584 (658)
Q Consensus 559 ~~~lA~allltlpGiP~IYyGdE~~------------------W------------------------------------ 584 (658)
+.++|++++||+||+|+||||+|++ |
T Consensus 352 ~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q 431 (539)
T TIGR02456 352 RIELLTALLLSLPGSPILYYGDEIGMGDNIWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQ 431 (539)
T ss_pred HHHHHHHHHHhCCCceEEEechhhcCcCCCccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHH
Confidence 7899999999999999999999853 2
Q ss_pred ------HHHHHHHHHHHHHhCccccCCCeeEEeec-CCEEEEEE---CCEEEEEEeCCC
Q 006158 585 ------YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAII---DEKVAMKLGPGH 633 (658)
Q Consensus 585 ------l~~~~~~Li~lRk~~pal~~G~~~~l~~~-~~v~a~~r---~~~vlvvvnn~~ 633 (658)
++++||+||+||+++|+|+.|+++.+..+ +++++|.| +++++|++|++.
T Consensus 432 ~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~ 490 (539)
T TIGR02456 432 LRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPTGNRRVLAFLREYEGERVLCVFNFSR 490 (539)
T ss_pred hhCcccHHHHHHHHHHHHhcCcccccCceEEEecCCCCEEEEEEEcCCcEEEEEEeCCC
Confidence 47899999999999999999999998875 47999987 678888888774
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=3e-56 Score=503.35 Aligned_cols=355 Identities=18% Similarity=0.227 Sum_probs=249.6
Q ss_pred HHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCC
Q 006158 228 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 307 (658)
Q Consensus 228 av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi 307 (658)
+|+|||||+||..++.. ..|||+||+++||||++||||+|||+||
T Consensus 5 ~v~Y~i~~~~f~~~~~~-----------------------------------~~G~~~gi~~~l~yl~~lG~~~i~l~Pi 49 (543)
T TIGR02403 5 KVIYQIYPKSFYDSTGD-----------------------------------GTGDLRGIIEKLDYLKKLGVDYIWLNPF 49 (543)
T ss_pred CEEEEEEhHHHhcCCCC-----------------------------------CccCHHHHHHhHHHHHHcCCCEEEECCc
Confidence 68999999999764321 1589999999999999999999999999
Q ss_pred CCCCCC-CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCC---cccCCCCCCCCCCc--
Q 006158 308 TESVSP-EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV---WNIFGGRLNWDDRA-- 381 (658)
Q Consensus 308 ~~~~s~-~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~---~~~~~g~~~w~~~~-- 381 (658)
|+++++ |||++.||+.|||+|||.++|++||++||++||+||||+|+|||+.+|+++... -++|...+.|.+..
T Consensus 50 ~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~ 129 (543)
T TIGR02403 50 YVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGK 129 (543)
T ss_pred ccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCC
Confidence 999854 799999999999999999999999999999999999999999999999864321 12232212232211
Q ss_pred -ccCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCc---------
Q 006158 382 -VVADDPHFQGRG--------NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--------- 443 (658)
Q Consensus 382 -~~~~~~~f~~~~--------~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~--------- 443 (658)
.......|.+.. .+........+||||++||+||++|+++++||+ ++||||||||+|++++
T Consensus 130 ~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~ 208 (543)
T TIGR02403 130 PPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDE 208 (543)
T ss_pred CCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCC
Confidence 000011111111 111112236799999999999999999999999 6899999999999875
Q ss_pred --------------hHHHHHHHHHh--CCC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHh-cCCCccccCchhhH
Q 006158 444 --------------GGYVKDYLEAT--EPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTTKG 505 (658)
Q Consensus 444 --------------~~~~~~~~~~~--~p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~-~~~~~~~fdf~~~~ 505 (658)
.+|++++.+.+ +|+ |+|||+|.... ..+..|... ...+.+.|+|...
T Consensus 209 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~--------------~~~~~y~~~~~~~~d~~~nf~~~- 273 (543)
T TIGR02403 209 IGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTI--------------ENCIRYSNPENKELSMVFTFHHL- 273 (543)
T ss_pred CCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCH--------------HHHHhhhCCCCCeeCeEEChhhh-
Confidence 34777765544 566 89999997521 122233221 1234555555421
Q ss_pred HHHHHhhh-------hhhhhhhhhhCC-CCCCcccCCCcceeecccCCcCCccCCCCCCh----hHHHHHHHHHHhCCCe
Q 006158 506 ILHSALDR-------CEYWRLSDEKGK-PPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGT 573 (658)
Q Consensus 506 ~i~~~~~~-------~~~~~l~~~~~~-~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~----~~~~lA~allltlpGi 573 (658)
......+ .....+...+.. ..... ......++|++|||++|+.+.++... ...+++++++||+||+
T Consensus 274 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~ 351 (543)
T TIGR02403 274 -KVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQ-AGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGT 351 (543)
T ss_pred -hchhccccccccCCCCHHHHHHHHHHHHHhcc-ccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCC
Confidence 1111000 011111111000 00000 01123457999999999999887432 2467888899999999
Q ss_pred eEEEcCchhH---------------------------------------------------H------------------
Q 006158 574 PSVFYDHIFS---------------------------------------------------H------------------ 584 (658)
Q Consensus 574 P~IYyGdE~~---------------------------------------------------W------------------ 584 (658)
||||||||+| |
T Consensus 352 P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~ 431 (543)
T TIGR02403 352 PYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVA 431 (543)
T ss_pred eEEEeccccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCC
Confidence 9999998731 2
Q ss_pred -----------------HHHHHHHHHHHHHhCccccCCCeeEEeecC-CEEEEEE---CCEEEEEEeCCCCC
Q 006158 585 -----------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAAII---DEKVAMKLGPGHYE 635 (658)
Q Consensus 585 -----------------l~~~~~~Li~lRk~~pal~~G~~~~l~~~~-~v~a~~r---~~~vlvvvnn~~~~ 635 (658)
++++||+||+|||++|+|+.|+++.+..++ ++++|.| +++++|++|.++..
T Consensus 432 ~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~~ 503 (543)
T TIGR02403 432 TNYKEINVEKALADDNSIFYFYQKLIALRKSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGEE 503 (543)
T ss_pred CCccccCHHHHhhCCccHHHHHHHHHHHHhhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCCC
Confidence 678999999999999999999999988765 7999988 57788888887643
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=5.1e-55 Score=492.74 Aligned_cols=356 Identities=15% Similarity=0.176 Sum_probs=245.5
Q ss_pred hHHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCC
Q 006158 227 AAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPP 306 (658)
Q Consensus 227 ~av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~P 306 (658)
.+|+|||||+||..++.. .+|||+||+++||||++||||+|||+|
T Consensus 10 ~~v~Yqi~~~~f~d~~~~-----------------------------------~~Gdl~gi~~~ldyl~~lGv~~i~l~P 54 (551)
T PRK10933 10 NGVIYQIYPKSFQDTTGS-----------------------------------GTGDLRGVTQRLDYLQKLGVDAIWLTP 54 (551)
T ss_pred cCeEEEEEchHhhcCCCC-----------------------------------CCcCHHHHHHhhHHHHhCCCCEEEECC
Confidence 389999999999765421 168999999999999999999999999
Q ss_pred CCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCC---cccCCCCCCCCCCcc
Q 006158 307 PTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV---WNIFGGRLNWDDRAV 382 (658)
Q Consensus 307 i~~~~s-~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~---~~~~~g~~~w~~~~~ 382 (658)
|++++. +|||++.||+.|||+|||++||++||++||++|||||||+|+|||+.+|+++... -++|...+.|.+...
T Consensus 55 ~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~ 134 (551)
T PRK10933 55 FYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEP 134 (551)
T ss_pred CCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCC
Confidence 999874 7999999999999999999999999999999999999999999999999864332 123322222322110
Q ss_pred ---c-CCCCCCCCCCCC--------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch------
Q 006158 383 ---V-ADDPHFQGRGNK--------SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG------ 444 (658)
Q Consensus 383 ---~-~~~~~f~~~~~~--------~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~------ 444 (658)
+ .....|.+..+. ........+||||++||+||++|++++++|+ ++||||||||+|+++..
T Consensus 135 ~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~ 213 (551)
T PRK10933 135 ETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPD 213 (551)
T ss_pred CCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCC
Confidence 0 001112111111 1111235799999999999999999999999 79999999999988753
Q ss_pred -----------------HHHHHHHHHh-CC-C-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHh-cCCCccccCchh
Q 006158 445 -----------------GYVKDYLEAT-EP-Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 503 (658)
Q Consensus 445 -----------------~~~~~~~~~~-~p-~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~-~~~~~~~fdf~~ 503 (658)
+|++++.+.+ ++ . ++|||+|.... +.+..|... ...+...|+|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~--------------~~~~~y~~~~~~~~~~~fnf~~ 279 (551)
T PRK10933 214 DLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSL--------------EHCQRYAALTGSELSMTFNFHH 279 (551)
T ss_pred CcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCH--------------HHHHHhhcccCCeeeeEecHHH
Confidence 4666655443 33 3 79999987421 112222211 112333444321
Q ss_pred hHHHHHHhhhh-------hhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCChh----HHHHHHHHHHhCCC
Q 006158 504 KGILHSALDRC-------EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG----REMQGYAYILTHPG 572 (658)
Q Consensus 504 ~~~i~~~~~~~-------~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~----~~~lA~allltlpG 572 (658)
. ....+.+. ....+...+........ ......+|++|||++|+.+.++.+.. ..+++++++||+||
T Consensus 280 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG 356 (551)
T PRK10933 280 L--KVDYPNGEKWTLAKPDFVALKTLFRHWQQGMH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQG 356 (551)
T ss_pred h--hhhhccCCcccccccCHHHHHHHHHHHHHhhc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCC
Confidence 1 11110000 00011110000000000 01133578999999999998874322 35677889999999
Q ss_pred eeEEEcCchhH---------------------------------------------------H-----------------
Q 006158 573 TPSVFYDHIFS---------------------------------------------------H----------------- 584 (658)
Q Consensus 573 iP~IYyGdE~~---------------------------------------------------W----------------- 584 (658)
+|+||||+|+| |
T Consensus 357 ~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~ 436 (551)
T PRK10933 357 TPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGL 436 (551)
T ss_pred ceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCC
Confidence 99999998731 3
Q ss_pred ------------------HHHHHHHHHHHHHhCccccCCCeeEEeec-CCEEEEEE---CCEEEEEEeCCCCC
Q 006158 585 ------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAII---DEKVAMKLGPGHYE 635 (658)
Q Consensus 585 ------------------l~~~~~~Li~lRk~~pal~~G~~~~l~~~-~~v~a~~r---~~~vlvvvnn~~~~ 635 (658)
++++||+||+||+++|+|+.|+++.+..+ +++++|.| +++++|++|.++..
T Consensus 437 ~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~ 509 (551)
T PRK10933 437 CDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREP 509 (551)
T ss_pred CcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCC
Confidence 66899999999999999999999987654 57999988 67888888887643
No 10
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.5e-51 Score=470.92 Aligned_cols=363 Identities=18% Similarity=0.206 Sum_probs=241.6
Q ss_pred hhHHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeC
Q 006158 226 LAAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLP 305 (658)
Q Consensus 226 ~~av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~ 305 (658)
..++||++++..|.....+.... .| .| .++.= ....++.||+++|||||+||||+||||
T Consensus 126 ~~~vIYElhv~~ft~~~~~~~~~-----------~G---~f----~~~~e---~~~~~~~g~~~~LdyL~~LGvt~I~L~ 184 (605)
T TIGR02104 126 EDAIIYELHIRDFSIHENSGVKN-----------KG---KY----LGLTE---TGTKGPNGVSTGLDYLKELGVTHVQLL 184 (605)
T ss_pred hHcEEEEEecchhccCCCCCcCC-----------CC---ce----eeeec---cCccccccchhHHHHHHHcCCCEEEeC
Confidence 34899999999998754432210 11 01 11110 001347889999999999999999999
Q ss_pred CCCCCCC----------CCCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCC
Q 006158 306 PPTESVS----------PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 367 (658)
Q Consensus 306 Pi~~~~s----------~~GYd~~Dy~~vDp~~Gt--------~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~ 367 (658)
||+++.+ +|||++.||++++++||+ .+|||+||++||++||+||||+|+|||+....
T Consensus 185 Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~----- 259 (605)
T TIGR02104 185 PVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE----- 259 (605)
T ss_pred CcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC-----
Confidence 9999763 699999999999999987 48999999999999999999999999985321
Q ss_pred cccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHH
Q 006158 368 WNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGY 446 (658)
Q Consensus 368 ~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~ 446 (658)
.+|.+. ..|+... ...+....+.++ ..++|+++|+||++|++++++|+++|||||||||++.+++.++
T Consensus 260 -~~f~~~~~~~~~~~--------~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~ 328 (605)
T TIGR02104 260 -SPFEKTVPGYYYRY--------NEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIET 328 (605)
T ss_pred -CcccCCCCCeeEEE--------CCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHH
Confidence 123221 1121110 111111111111 2479999999999999999999999999999999999999998
Q ss_pred HHHHHHH---hCCC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHh--------hhh
Q 006158 447 VKDYLEA---TEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSAL--------DRC 514 (658)
Q Consensus 447 ~~~~~~~---~~p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~--------~~~ 514 (658)
++++.++ .+|. +++||.|+....+.. +. ......+ ... ...+.|++.++..+.... ..+
T Consensus 329 ~~~~~~~~~~~~p~~~ligE~w~~~~~~~~---~~----~~~~~~~-~~~-~~~~~~n~~~rd~i~~~~~~~~~~~f~~g 399 (605)
T TIGR02104 329 MNEIRKALNKIDPNILLYGEGWDLGTPLPP---EQ----KATKANA-YQM-PGIAFFNDEFRDALKGSVFHLKKKGFVSG 399 (605)
T ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcch---hh----hhhhhcc-CCC-CceEEECCcchhhhcCCccccccCceecC
Confidence 8876554 4677 799999987421110 00 0000000 000 012334444443333110 000
Q ss_pred ---hhhhhhhhhCCCC-----CCcccCCCcceeecccCCcCCccCCCCC---------ChhHHHHHHHHHHhCCCeeEEE
Q 006158 515 ---EYWRLSDEKGKPP-----GVVGWWPSRAVTFIENHDTGSTQGHWRF---------PGGREMQGYAYILTHPGTPSVF 577 (658)
Q Consensus 515 ---~~~~l~~~~~~~~-----~~~~~~p~~~vnfl~nHDt~R~~~~~~~---------~~~~~~lA~allltlpGiP~IY 577 (658)
....+...+.... ......|.++|||++|||+.|+.+.+.. ..++.++|++++||+||+||||
T Consensus 400 ~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy 479 (605)
T TIGR02104 400 NPGTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLH 479 (605)
T ss_pred CCCcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceee
Confidence 0111111111000 0112356789999999999987544221 1457899999999999999999
Q ss_pred cCchhH--------------------H--------HHHHHHHHHHHHHhCccccCCCeeE-------Eee-cCCEEEEEE
Q 006158 578 YDHIFS--------------------H--------YRQEIEALLSVRKRNKIHCRSRVEI-------VKA-ERDVYAAII 621 (658)
Q Consensus 578 yGdE~~--------------------W--------l~~~~~~Li~lRk~~pal~~G~~~~-------l~~-~~~v~a~~r 621 (658)
|||||+ | +++++|+||+|||++|+|+.|++.. +.. ++.+++|.|
T Consensus 480 ~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r 559 (605)
T TIGR02104 480 AGQEFMRTKQGDENSYNSPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRL 559 (605)
T ss_pred cchhhhccCCCCCCCccCCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEE
Confidence 999973 5 8999999999999999999987642 222 457999887
Q ss_pred C--------CEEEEEEeCCCC
Q 006158 622 D--------EKVAMKLGPGHY 634 (658)
Q Consensus 622 ~--------~~vlvvvnn~~~ 634 (658)
. +.++|++|.++.
T Consensus 560 ~~~~~~~~~~~llVv~N~s~~ 580 (605)
T TIGR02104 560 KDHANGDPWKDIIVIHNANPE 580 (605)
T ss_pred eCCcCCCCcCeEEEEEeCCCC
Confidence 2 258888888753
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=4.5e-50 Score=451.81 Aligned_cols=341 Identities=21% Similarity=0.231 Sum_probs=238.1
Q ss_pred CCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 006158 263 GTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 340 (658)
Q Consensus 263 ~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~ 340 (658)
.+.|+++++.|. ..|||+||+++|||||+||||+||||||++.+ .+|||++.||++|||+|||++|||+||++
T Consensus 94 ~viYE~hv~~f~-----~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~ 168 (542)
T TIGR02402 94 AVIYELHVGTFT-----PEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDA 168 (542)
T ss_pred cEEEEEEhhhcC-----CCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHH
Confidence 356667777664 16899999999999999999999999998876 78999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHH
Q 006158 341 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---FVRKD 417 (658)
Q Consensus 341 aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~---~vr~~ 417 (658)
||++||+||||+|+||++.++... ..|. ++|... ..+++ .+++|++++ +||++
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~~~----~~~~--------------~y~~~~--~~~~w----g~~~n~~~~~~~~vr~~ 224 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGNYL----PRYA--------------PYFTDR--YSTPW----GAAINFDGPGSDEVRRY 224 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccccc----cccC--------------ccccCC--CCCCC----CCccccCCCcHHHHHHH
Confidence 999999999999999998654310 0110 012111 11122 247999999 99999
Q ss_pred HHHHHHHHHhhcCccEEEEcccCCCch----HHHHHH---HHHhCCC----EEEEcccCCC-Cccc----ccCCC---cc
Q 006158 418 IKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDY---LEATEPY----FAVGEYWDSL-SYTY----GEMDH---NQ 478 (658)
Q Consensus 418 i~~~l~~w~~~~GIDGfRlD~a~~~~~----~~~~~~---~~~~~p~----~lvGE~w~~~-~~~~----g~m~y---~~ 478 (658)
|++++++|+++|||||||||+++++.. .|++++ +++++|+ ++|||.|.+. .+.. +.+.+ ..
T Consensus 225 i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~ 304 (542)
T TIGR02402 225 ILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWN 304 (542)
T ss_pred HHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEEC
Confidence 999999999999999999999987753 366654 4445555 7999998542 2221 22222 11
Q ss_pred hhhHHHHHHHHHhcC-CCccccCchhhHHHHHHhhhhhh--hhhhhhhCCCCC--CcccCCCcceeecccCCc-------
Q 006158 479 DAHRQRIIDWINAAS-GTAGAFDVTTKGILHSALDRCEY--WRLSDEKGKPPG--VVGWWPSRAVTFIENHDT------- 546 (658)
Q Consensus 479 ~~~~~~i~~~~~~~~-~~~~~fdf~~~~~i~~~~~~~~~--~~l~~~~~~~~~--~~~~~p~~~vnfl~nHDt------- 546 (658)
+.++..++.++.+.. +..+.+.-+. ..+...+..+-. ............ .....|.+.+||++|||+
T Consensus 305 ~~~~~~~~~~~~g~~~g~~~~~~~~~-~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~~~ 383 (542)
T TIGR02402 305 DDFHHALHVLLTGERQGYYADFGDPL-AALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRALG 383 (542)
T ss_pred chHHHHHHHHhcCCcceeecccCcCH-HHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccchh
Confidence 235677777764321 1111111011 122222211100 000000000000 001134578999999997
Q ss_pred CCccCCCCCChhHHHHHHHHHHhCCCeeEEEcCchh--------------------------------------------
Q 006158 547 GSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-------------------------------------------- 582 (658)
Q Consensus 547 ~R~~~~~~~~~~~~~lA~allltlpGiP~IYyGdE~-------------------------------------------- 582 (658)
.|+...+. .++.++|++++||+||+||||||||+
T Consensus 384 ~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~ 461 (542)
T TIGR02402 384 ERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQD 461 (542)
T ss_pred hhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCc
Confidence 67777653 58899999999999999999999983
Q ss_pred ---------HH----------HHHHHHHHHHHHHhCccccCCCeeEEee----cCCEEEEEE-CCEEEEEEeCCCCC
Q 006158 583 ---------SH----------YRQEIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII-DEKVAMKLGPGHYE 635 (658)
Q Consensus 583 ---------~W----------l~~~~~~Li~lRk~~pal~~G~~~~l~~----~~~v~a~~r-~~~vlvvvnn~~~~ 635 (658)
+| ++++||+||+|||++++|+.++.+.+.. ++.++++.. +++++|++|.++..
T Consensus 462 ~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~ 538 (542)
T TIGR02402 462 EETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTSP 538 (542)
T ss_pred hhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCCC
Confidence 26 8899999999999999998887655543 446777765 56788899887644
No 12
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=7.4e-50 Score=458.73 Aligned_cols=322 Identities=20% Similarity=0.291 Sum_probs=226.6
Q ss_pred hHHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHh--HHHHHHcCCCEEEe
Q 006158 227 AAEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEK--ATELSSLGFSVIWL 304 (658)
Q Consensus 227 ~av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~k--LdYLk~LGv~~I~L 304 (658)
.+|||+|++++|...++.. + ....|+|+||+++ |||||+||||+|||
T Consensus 155 d~iIYE~hvr~Ft~~~~~~---------~----------------------~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L 203 (688)
T TIGR02100 155 DTIIYEAHVKGFTQLHPDI---------P----------------------EELRGTYAGLAHPAMIDYLKKLGVTAVEL 203 (688)
T ss_pred ccEEEEEEhHHhcCCCCCC---------C----------------------cccccCHHHHhccchhHHHHHcCCCEEEE
Confidence 4899999999997642210 0 0125899999985 99999999999999
Q ss_pred CCCCCCC-----------CCCCCCcccCCCCCCCC---CCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCccc
Q 006158 305 PPPTESV-----------SPEGYMPRDLYNLSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370 (658)
Q Consensus 305 ~Pi~~~~-----------s~~GYd~~Dy~~vDp~~---Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~ 370 (658)
+|||++. ++|||++.||++|||+| |+.+|||+||++||++||+||||+|+|||+..+.. +....
T Consensus 204 ~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~ 281 (688)
T TIGR02100 204 LPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNEL--GPTLS 281 (688)
T ss_pred CCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCC--CCccc
Confidence 9999875 36999999999999999 67899999999999999999999999999976542 11111
Q ss_pred CCCC--CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch----
Q 006158 371 FGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG---- 444 (658)
Q Consensus 371 ~~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~---- 444 (658)
+.+. ..|+... . ...+.+..+. ...++||+++|+||++|+++++||+++|||||||||++..+..
T Consensus 282 ~~~~d~~~yy~~~-~------~~~~~~~~~~--g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~ 352 (688)
T TIGR02100 282 FRGIDNASYYRLQ-P------DDKRYYINDT--GTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYG 352 (688)
T ss_pred ccCCCCCcceEec-C------CCCceecCCC--CccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCC
Confidence 2211 1111100 0 0001111111 2346899999999999999999999999999999999987653
Q ss_pred -----HHHHHHHHH-hCCC-EEEEcccCCC--CcccccC----CCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHh
Q 006158 445 -----GYVKDYLEA-TEPY-FAVGEYWDSL--SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSAL 511 (658)
Q Consensus 445 -----~~~~~~~~~-~~p~-~lvGE~w~~~--~~~~g~m----~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~ 511 (658)
.+++++.+. +.|. ++|||.|+.. .+..+.+ ...++.+++.|++|+.+..+... .+...+
T Consensus 353 ~~~~~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~--------~~~~~l 424 (688)
T TIGR02100 353 FDMLSGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPPGWAEWNDRYRDDMRRFWRGDAGMIG--------ELANRL 424 (688)
T ss_pred CcccHHHHHHHHhCcccCCeEEEEeeecCCCCcccccCCCCceEEecHHHHHHHHHHHcCCCCcHH--------HHHHHH
Confidence 566665443 4566 7999999864 3332221 12335578888888865432211 121221
Q ss_pred hhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCC------------------------------------
Q 006158 512 DRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF------------------------------------ 555 (658)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~------------------------------------ 555 (658)
.+. ..+.. .....|.++||||++||+.++.+++..
T Consensus 425 ~gs--~~~~~-------~~~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~ 495 (688)
T TIGR02100 425 TGS--SDLFE-------HNGRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAIN 495 (688)
T ss_pred hCC--Hhhcc-------ccCCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHH
Confidence 111 00000 011246789999999999775442110
Q ss_pred --ChhHHHHHHHHHHhCCCeeEEEcCchhH--------------------H--------HHHHHHHHHHHHHhCccccCC
Q 006158 556 --PGGREMQGYAYILTHPGTPSVFYDHIFS--------------------H--------YRQEIEALLSVRKRNKIHCRS 605 (658)
Q Consensus 556 --~~~~~~lA~allltlpGiP~IYyGdE~~--------------------W--------l~~~~~~Li~lRk~~pal~~G 605 (658)
..++.+++++++||.||+|||||||||+ | +++++|+||+|||++|+|+.+
T Consensus 496 ~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~ 575 (688)
T TIGR02100 496 ALRRRQQRNLLATLLLSQGTPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRE 575 (688)
T ss_pred HHHHHHHHHHHHHHHHcCCCceeeecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhccc
Confidence 0246789999999999999999999973 5 999999999999999999877
Q ss_pred Ce
Q 006158 606 RV 607 (658)
Q Consensus 606 ~~ 607 (658)
.+
T Consensus 576 ~~ 577 (688)
T TIGR02100 576 RF 577 (688)
T ss_pred cc
Confidence 54
No 13
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.1e-49 Score=454.48 Aligned_cols=332 Identities=16% Similarity=0.221 Sum_probs=225.4
Q ss_pred CcceeEeeeeeccCCCCCCcHHHHHHhH-HHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 006158 264 TGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 340 (658)
Q Consensus 264 ~~y~~~~~~F~W~~~~~GGdl~Gi~~kL-dYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~ 340 (658)
+.|+++++.|.-+..+.-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+||++
T Consensus 149 ~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~ 228 (633)
T PRK12313 149 SIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDA 228 (633)
T ss_pred eEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHH
Confidence 3455555544322111137999999995 99999999999999999987 68999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006158 341 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 420 (658)
Q Consensus 341 aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~ 420 (658)
||++||+||||+|+||++.++.. ...|.+...|. +..... ......+.++||++||+||++|++
T Consensus 229 ~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~----------~~~~~~--~~~~~w~~~~~n~~~~~vr~~l~~ 292 (633)
T PRK12313 229 LHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYE----------YQDPRR--AENPDWGALNFDLGKNEVRSFLIS 292 (633)
T ss_pred HHHCCCEEEEEECCCCCCCCccc----ccccCCCccee----------ecCCCC--CcCCCCCCcccCCCCHHHHHHHHH
Confidence 99999999999999999976531 11122211110 000000 000112357899999999999999
Q ss_pred HHHHHHhhcCccEEEEcccCCCc-----------------------hHHHHHHH---HHhCCC-EEEEcccCCCCc----
Q 006158 421 WLCWLRNEIGYDGWRLDFVRGFW-----------------------GGYVKDYL---EATEPY-FAVGEYWDSLSY---- 469 (658)
Q Consensus 421 ~l~~w~~~~GIDGfRlD~a~~~~-----------------------~~~~~~~~---~~~~p~-~lvGE~w~~~~~---- 469 (658)
++++|+++|||||||||++.++- .+||+.+. ++.+|. ++|||.+...+.
T Consensus 293 ~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~ 372 (633)
T PRK12313 293 SALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGP 372 (633)
T ss_pred HHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcccccc
Confidence 99999999999999999886331 35777654 455787 899998754311
Q ss_pred -ccccCCCcch---hhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCC
Q 006158 470 -TYGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHD 545 (658)
Q Consensus 470 -~~g~m~y~~~---~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHD 545 (658)
..|.++|... .+...+..|+...... ..++.. .+. ..+ ...+. ...++++|||
T Consensus 373 ~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~-~~~~~~---~~~--------~~~----------~~~~~-e~~~l~~sHD 429 (633)
T PRK12313 373 VEVGGLGFDYKWNMGWMNDTLRYFEEDPIY-RKYHHN---LLT--------FSF----------MYAFS-ENFVLPFSHD 429 (633)
T ss_pred ccCCCCCcCceeCcHHHHHHHHHhhhCccc-cccccc---cch--------HHH----------hhhhh-cccccCCCCc
Confidence 1232333211 1122233333211100 000000 000 000 00011 1225778999
Q ss_pred c-----CCccCCCCCCh----hHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHHHHH
Q 006158 546 T-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLS 594 (658)
Q Consensus 546 t-----~R~~~~~~~~~----~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~Li~ 594 (658)
+ .|+...+..+. .+.+++++++||+||+||||||+|++ | ++++||+||+
T Consensus 430 ~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~ 509 (633)
T PRK12313 430 EVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQ 509 (633)
T ss_pred ccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHH
Confidence 9 46666554443 67899999999999999999999974 5 8999999999
Q ss_pred HHHhCccccC-----CCeeEEeec---CCEEEEEEC-----CEEEEEEeCCCC
Q 006158 595 VRKRNKIHCR-----SRVEIVKAE---RDVYAAIID-----EKVAMKLGPGHY 634 (658)
Q Consensus 595 lRk~~pal~~-----G~~~~l~~~---~~v~a~~r~-----~~vlvvvnn~~~ 634 (658)
||+++|+|+. |+++++..+ +++++|.|. +.++||+|.++.
T Consensus 510 LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~ 562 (633)
T PRK12313 510 LYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV 562 (633)
T ss_pred HHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC
Confidence 9999999974 567888754 369999882 468888888763
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=3.6e-49 Score=451.21 Aligned_cols=330 Identities=17% Similarity=0.158 Sum_probs=225.6
Q ss_pred CcceeEeeeeeccCCCCCCcHHHHHHhH-HHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 006158 264 TGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 340 (658)
Q Consensus 264 ~~y~~~~~~F~W~~~~~GGdl~Gi~~kL-dYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~ 340 (658)
+.|+++++.|. .+|+++||+++| ||||+||||+||||||++++ .+|||+++||++|+|+|||++|||+||++
T Consensus 140 ~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~ 214 (613)
T TIGR01515 140 SIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDA 214 (613)
T ss_pred eEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHH
Confidence 57888888885 258999999997 99999999999999999987 67999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006158 341 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 420 (658)
Q Consensus 341 aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~ 420 (658)
||++||+||||+|+||++.++.. ...|.+...| +..... .......+.++||+++|+||++|++
T Consensus 215 ~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y-----------~~~~~~-~~~~~~w~~~~~~~~~~~Vr~~l~~ 278 (613)
T TIGR01515 215 CHQAGIGVILDWVPGHFPKDDHG----LAEFDGTPLY-----------EHKDPR-DGEHWDWGTLIFDYGRPEVRNFLVA 278 (613)
T ss_pred HHHCCCEEEEEecccCcCCccch----hhccCCCcce-----------eccCCc-cCcCCCCCCceecCCCHHHHHHHHH
Confidence 99999999999999999976531 1112221111 000000 0011112467999999999999999
Q ss_pred HHHHHHhhcCccEEEEcccCCCc------------------------hHHHHHHHH---HhCCC-EEEEcccCCCCc---
Q 006158 421 WLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSY--- 469 (658)
Q Consensus 421 ~l~~w~~~~GIDGfRlD~a~~~~------------------------~~~~~~~~~---~~~p~-~lvGE~w~~~~~--- 469 (658)
++++|+++|||||||||++.++. .+||+++.+ +.+|+ ++|||.+.+.+-
T Consensus 279 ~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~ 358 (613)
T TIGR01515 279 NALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTR 358 (613)
T ss_pred HHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccc
Confidence 99999999999999999975431 357776544 45687 899997654211
Q ss_pred --ccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCc-
Q 006158 470 --TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT- 546 (658)
Q Consensus 470 --~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt- 546 (658)
..|.+ +++..+++.+...+...+......+-.........+...+. ....+++|||+
T Consensus 359 ~~~~gg~-------------------gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~~ 418 (613)
T TIGR01515 359 PTDEGGL-------------------GFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDEV 418 (613)
T ss_pred cccCCcC-------------------CcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCCc
Confidence 11111 12222222222222222111111000000000000000001 12246899999
Q ss_pred ----CCccCCCCCC----hhHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHHHHHHH
Q 006158 547 ----GSTQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVR 596 (658)
Q Consensus 547 ----~R~~~~~~~~----~~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~Li~lR 596 (658)
+|+...+.++ .++.+++++++||+||+||||||+|++ | +.++||+|++||
T Consensus 419 ~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr 498 (613)
T TIGR01515 419 VHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTY 498 (613)
T ss_pred ccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHH
Confidence 4555554433 257899999999999999999999863 5 889999999999
Q ss_pred HhCccccCC-----CeeEEee---cCCEEEEEEC-----CEEEEEEeCCCC
Q 006158 597 KRNKIHCRS-----RVEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 634 (658)
Q Consensus 597 k~~pal~~G-----~~~~l~~---~~~v~a~~r~-----~~vlvvvnn~~~ 634 (658)
+++|+|..| .++++.. ++.+++|.|. +.++|++|.++.
T Consensus 499 ~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~ 549 (613)
T TIGR01515 499 QKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV 549 (613)
T ss_pred hhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 999999754 4555654 3479998872 368888888764
No 15
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.1e-50 Score=426.56 Aligned_cols=286 Identities=26% Similarity=0.397 Sum_probs=198.6
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
|||+||++||||||+||||+|||+||++++ ++|||+++||++|||+|||++||++||++||++||+||||+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 899999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc----cCCCCCCCCCC--cccCCCC-CCCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 006158 361 YQNQNGVWN----IFGGRLNWDDR--AVVADDP-HFQGRGNKS-----SGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 428 (658)
Q Consensus 361 ~~~~~g~~~----~~~g~~~w~~~--~~~~~~~-~f~~~~~~~-----~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~ 428 (658)
|+++..... ++.....|.+. ..+.... .+....+.. ....+..+|+||++|++||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 985211111 01111223211 0000000 111111110 024678999999999999999999999999 6
Q ss_pred cCccEEEEcccCCCchHHHHHHHHHhC---CC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHh-cCCCccccCchh
Q 006158 429 IGYDGWRLDFVRGFWGGYVKDYLEATE---PY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 503 (658)
Q Consensus 429 ~GIDGfRlD~a~~~~~~~~~~~~~~~~---p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~-~~~~~~~fdf~~ 503 (658)
+||||||||++++++.++++++.++++ |. +++||.|.... ..+..+... .......+++..
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcccc
Confidence 889999999999999999998877653 55 89999998631 111111111 111112344443
Q ss_pred hHHHHHHh---hhh--hhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCChhHHHHHHHHHHhCCCeeEEEc
Q 006158 504 KGILHSAL---DRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578 (658)
Q Consensus 504 ~~~i~~~~---~~~--~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~~~~~lA~allltlpGiP~IYy 578 (658)
........ ..+ ....+......... ....+...++|++|||+.|+.+..+....+.++|++++||+||+|+|||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~iy~ 304 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSSWQS-SYPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMIYY 304 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHHHHH-HSTTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEEET
T ss_pred cccccchhhhhccccchhhhhhhhhhhhhh-hhcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEEEe
Confidence 32222221 111 11111111000000 0001347899999999999988877444489999999999999999999
Q ss_pred CchhH
Q 006158 579 DHIFS 583 (658)
Q Consensus 579 GdE~~ 583 (658)
|+|++
T Consensus 305 G~E~g 309 (316)
T PF00128_consen 305 GDEIG 309 (316)
T ss_dssp TGGGT
T ss_pred Chhcc
Confidence 99985
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.4e-48 Score=445.11 Aligned_cols=326 Identities=18% Similarity=0.233 Sum_probs=223.1
Q ss_pred CCcHHHHHH--hHHHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCCCCCCCCCCH-----HHHHHHHHHHH
Q 006158 281 GRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYNLSSRYGNI-----DELKDVVNKFH 342 (658)
Q Consensus 281 GGdl~Gi~~--kLdYLk~LGv~~I~L~Pi~~~~-----------s~~GYd~~Dy~~vDp~~Gt~-----edlk~LV~~aH 342 (658)
.|+++|+++ +|||||+||||+|||+||+++. .+|||++.||++|||+|||. +|||+||++||
T Consensus 173 ~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H 252 (658)
T PRK03705 173 RGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALH 252 (658)
T ss_pred cccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHH
Confidence 489999997 5999999999999999999864 46999999999999999995 79999999999
Q ss_pred HcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006158 343 DVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWL 422 (658)
Q Consensus 343 ~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l 422 (658)
++||+||||+|+|||+.... .+.+..+.+. . ....+++...+.+..+. ...++||+++|+||++|++++
T Consensus 253 ~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~---d----~~~yy~~~~~g~~~~~~--g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 253 KAGIEVILDVVFNHSAELDL--DGPTLSLRGI---D----NRSYYWIREDGDYHNWT--GCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HCCCEEEEEEcccCccCcCC--CCcchhcccC---C----CccceEECCCCCcCCCC--CccCcccCCCHHHHHHHHHHH
Confidence 99999999999999996432 1111111110 0 00000111122222222 234799999999999999999
Q ss_pred HHHHhhcCccEEEEcccCCCch--HHHHH--HHHH-----hCCC-EEEEcccCCC--CcccccC----CCcchhhHHHHH
Q 006158 423 CWLRNEIGYDGWRLDFVRGFWG--GYVKD--YLEA-----TEPY-FAVGEYWDSL--SYTYGEM----DHNQDAHRQRII 486 (658)
Q Consensus 423 ~~w~~~~GIDGfRlD~a~~~~~--~~~~~--~~~~-----~~p~-~lvGE~w~~~--~~~~g~m----~y~~~~~~~~i~ 486 (658)
+||+++|||||||||+|.++.. .|++. ++++ +.++ .++||.|+.. .+..|.+ ...++.+|+.|+
T Consensus 322 ~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~~~~~~~g~~~~~~~~~Nd~fRd~ir 401 (658)
T PRK03705 322 RYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIGPGGYQVGNFPPPFAEWNDHFRDAAR 401 (658)
T ss_pred HHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCCCChhhhcCCCcceEEEchHHHHHHH
Confidence 9999999999999999987752 22221 2333 2345 6999999864 3333322 233455788888
Q ss_pred HHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCC-----------
Q 006158 487 DWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF----------- 555 (658)
Q Consensus 487 ~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~----------- 555 (658)
.|+....+... ... ..+.+. ..+.. ..+..|.+.|||+++||+.++.+++.+
T Consensus 402 ~f~~~~~~~~~-------~~~-~~l~gs--~~~~~-------~~~~~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~ 464 (658)
T PRK03705 402 RFWLHGDLPLG-------EFA-GRFAAS--SDVFK-------RNGRLPSASINLVTAHDGFTLRDCVCFNQKHNEANGEE 464 (658)
T ss_pred HHHccCCCcHH-------HHH-HHHhcc--hhhcc-------ccCCCCCeEEEEEEeCCCccHHHHHhhhccchhhcccc
Confidence 88754322111 111 111110 00100 012357899999999999765442210
Q ss_pred ---------------------------ChhHHHHHHHHHHhCCCeeEEEcCchhH--------------------H----
Q 006158 556 ---------------------------PGGREMQGYAYILTHPGTPSVFYDHIFS--------------------H---- 584 (658)
Q Consensus 556 ---------------------------~~~~~~lA~allltlpGiP~IYyGdE~~--------------------W---- 584 (658)
..++.++|++++|+++|+|||||||||+ |
T Consensus 465 n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~ 544 (658)
T PRK03705 465 NRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQAD 544 (658)
T ss_pred cccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHHhccCCCCCCCCccCCCCccccccchhh
Confidence 0235688999999999999999999973 5
Q ss_pred --HHHHHHHHHHHHHhCccccCCCe--------eEEeecC------------CEEEEEECCEEEEEEeCCCC
Q 006158 585 --YRQEIEALLSVRKRNKIHCRSRV--------EIVKAER------------DVYAAIIDEKVAMKLGPGHY 634 (658)
Q Consensus 585 --l~~~~~~Li~lRk~~pal~~G~~--------~~l~~~~------------~v~a~~r~~~vlvvvnn~~~ 634 (658)
+++++|+||+|||++|+|+..++ .++..++ ..+++...+.++|++|....
T Consensus 545 ~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~N~~~~ 616 (658)
T PRK03705 545 RGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPKQLQILLSDRWLIAINATLE 616 (658)
T ss_pred hHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcceEEEEEECCCEEEEECCCCC
Confidence 99999999999999999976544 3333322 33555556678888876554
No 17
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=8e-49 Score=472.66 Aligned_cols=326 Identities=21% Similarity=0.275 Sum_probs=231.3
Q ss_pred CCCCcceeEeeeeeccCCCCCCcHHHHHHhHH------HHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCCC
Q 006158 261 GTGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYN 323 (658)
Q Consensus 261 ~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLd------YLk~LGv~~I~L~Pi~~~~-----------s~~GYd~~Dy~~ 323 (658)
.+.+.|++++++|+......||+++|+.++|+ |||+||||+|||+||+++. .||||++.||++
T Consensus 157 ~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa 236 (1221)
T PRK14510 157 DDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLA 236 (1221)
T ss_pred ccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCC
Confidence 45678999999998655556766666666666 9999999999999999875 368999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCC----CCCCCCC
Q 006158 324 LSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ----GRGNKSS 397 (658)
Q Consensus 324 vDp~~G--t~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~----~~~~~~~ 397 (658)
|||+|| +.+|||+||++||++||+||||+|+|||+.++.... .. .+.+. . ..++|. ....+..
T Consensus 237 ~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p-~~-~~~~~---d------~~~yy~~~~~~~~~y~~ 305 (1221)
T PRK14510 237 PDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGP-TL-SAYGS---D------NSPYYRLEPGNPKEYEN 305 (1221)
T ss_pred cChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCC-cc-cccCC---C------CCCceEecCCCCCcccC
Confidence 999999 999999999999999999999999999998754210 00 01110 0 001111 1112333
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC---chHHHHH---HHHHhCCC-EE-----EEcccC
Q 006158 398 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---WGGYVKD---YLEATEPY-FA-----VGEYWD 465 (658)
Q Consensus 398 ~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~---~~~~~~~---~~~~~~p~-~l-----vGE~w~ 465 (658)
+++...++ |+++++|+++|++++++|++ +||||||||+|.++ +.+|++. .+++++|+ ++ |||.|+
T Consensus 306 ~~G~gn~~--n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd 382 (1221)
T PRK14510 306 WWGCGNLP--NLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWD 382 (1221)
T ss_pred CCCCCCcc--ccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEeccc
Confidence 33344444 55699999999999999997 99999999999999 7777765 46667776 44 999998
Q ss_pred CC--Ccccc-------cCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCc
Q 006158 466 SL--SYTYG-------EMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSR 536 (658)
Q Consensus 466 ~~--~~~~g-------~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~ 536 (658)
.. .+..| .|||. +++.|++|+.+..+.. ..+...+.+. .+.. + .....|..
T Consensus 383 ~~~~~~~~g~f~~~~~~~N~~---frd~vr~f~~g~~~~~--------~~~a~~l~gs-----~d~~---~-~~~~~~~~ 442 (1221)
T PRK14510 383 DGLGGYQYGKFPQYWGEWNDP---LRDIMRRFWLGDIGMA--------GELATRLAGS-----ADIF---P-HRRRNFSR 442 (1221)
T ss_pred CCCCccccCCCCcceeeeccH---HHHHHHHHhcCCCchH--------HHHHHHHhCc-----Hhhc---C-ccCCCccc
Confidence 64 22222 23433 4677777765432110 0111111110 0000 0 01224568
Q ss_pred ceeecccCCcCCccCCCCC--------------------------------------ChhHHHHHHHHHHhCCCeeEEEc
Q 006158 537 AVTFIENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFY 578 (658)
Q Consensus 537 ~vnfl~nHDt~R~~~~~~~--------------------------------------~~~~~~lA~allltlpGiP~IYy 578 (658)
.+||++|||+.|+.+.+.+ ..++.++|++++||+||+|||||
T Consensus 443 ~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~ 522 (1221)
T PRK14510 443 SINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYY 522 (1221)
T ss_pred ceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEec
Confidence 9999999999987654431 12457899999999999999999
Q ss_pred CchhH--------------------H------HHHHHHHHHHHHHhCccccCCCeeEEee-----cCCEEEEE
Q 006158 579 DHIFS--------------------H------YRQEIEALLSVRKRNKIHCRSRVEIVKA-----ERDVYAAI 620 (658)
Q Consensus 579 GdE~~--------------------W------l~~~~~~Li~lRk~~pal~~G~~~~l~~-----~~~v~a~~ 620 (658)
|||++ | +++++|+||+|||++|+|+.|++..... .++|..|.
T Consensus 523 GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv~w~~ 595 (1221)
T PRK14510 523 GDEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDVEWLR 595 (1221)
T ss_pred chhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCEEEEC
Confidence 99974 5 9999999999999999999999876542 23565553
No 18
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.3e-48 Score=447.32 Aligned_cols=333 Identities=17% Similarity=0.227 Sum_probs=223.7
Q ss_pred CCcceeEeeeeecc-CCCCCCcHHHHHHhH-HHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHH
Q 006158 263 GTGFEILCQGFNWE-SHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 338 (658)
Q Consensus 263 ~~~y~~~~~~F~W~-~~~~GGdl~Gi~~kL-dYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV 338 (658)
.+.|++++++|.-+ ..+.-|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+||
T Consensus 242 ~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV 321 (726)
T PRK05402 242 ISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFV 321 (726)
T ss_pred cEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHH
Confidence 45777777777533 111127999999996 99999999999999999987 579999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 006158 339 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 418 (658)
Q Consensus 339 ~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i 418 (658)
++||++||+||||+|+||++.++.. ...|++...|... + ...+.... | +..++|+++|+||++|
T Consensus 322 ~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~-----~---~~~~~~~~---w-~~~~~n~~~~~v~~~l 385 (726)
T PRK05402 322 DACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHA-----D---PREGEHPD---W-GTLIFNYGRNEVRNFL 385 (726)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceecc-----C---CcCCccCC---C-CCccccCCCHHHHHHH
Confidence 9999999999999999999876542 1122221111000 0 00011111 1 2347999999999999
Q ss_pred HHHHHHHHhhcCccEEEEcccCCC------------------------chHHHHHHHH---HhCCC-EEEEcccCCCCc-
Q 006158 419 KEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLE---ATEPY-FAVGEYWDSLSY- 469 (658)
Q Consensus 419 ~~~l~~w~~~~GIDGfRlD~a~~~------------------------~~~~~~~~~~---~~~p~-~lvGE~w~~~~~- 469 (658)
++++++|+++|||||||||++.++ ..+||+.+.+ +.+|+ ++|||.+...+.
T Consensus 386 ~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~ 465 (726)
T PRK05402 386 VANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGV 465 (726)
T ss_pred HHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCc
Confidence 999999999999999999987543 2357776544 45787 899996543111
Q ss_pred ----ccccCCCcch---hhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecc
Q 006158 470 ----TYGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 542 (658)
Q Consensus 470 ----~~g~m~y~~~---~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~ 542 (658)
..+.+++... .+...+..|+...... ..+... .+ .. . +...+.. .+++++
T Consensus 466 ~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~-~~~~~~---~~-------~~-~----------~~~~~~e-~~~l~~ 522 (726)
T PRK05402 466 TRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIY-RKYHHN---EL-------TF-S----------LLYAYSE-NFVLPL 522 (726)
T ss_pred cccccCCCCCCCceecCCcchHHHHHHhhCccc-cccccc---ch-------hH-H----------HhHhhhc-cccCCC
Confidence 1111111100 0111222232211000 000000 00 00 0 0000111 235789
Q ss_pred cCCcC-----CccCCCCCC----hhHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHH
Q 006158 543 NHDTG-----STQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEA 591 (658)
Q Consensus 543 nHDt~-----R~~~~~~~~----~~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~ 591 (658)
|||+. |+...+..+ ..+.+++++++||+||+||||||+|++ | ++++||+
T Consensus 523 sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~ 602 (726)
T PRK05402 523 SHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVRD 602 (726)
T ss_pred CCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHHH
Confidence 99995 444444333 256789999999999999999999963 5 8899999
Q ss_pred HHHHHHhCccccCC-----CeeEEee---cCCEEEEEEC-----CEEEEEEeCCCC
Q 006158 592 LLSVRKRNKIHCRS-----RVEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 634 (658)
Q Consensus 592 Li~lRk~~pal~~G-----~~~~l~~---~~~v~a~~r~-----~~vlvvvnn~~~ 634 (658)
|++||+++|+|+.| .++++.. +++|++|.|. ++++||+|.++.
T Consensus 603 Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~ 658 (726)
T PRK05402 603 LNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV 658 (726)
T ss_pred HHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 99999999999765 4556654 3479999882 568888888764
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-46 Score=428.14 Aligned_cols=348 Identities=16% Similarity=0.121 Sum_probs=226.3
Q ss_pred CcceeEeeeeeccCCCCCCcHHHHHHhH-HHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 006158 264 TGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 340 (658)
Q Consensus 264 ~~y~~~~~~F~W~~~~~GGdl~Gi~~kL-dYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~ 340 (658)
+.|++++.+|.....+.-|++++++++| +|||+||||+|+||||++++ .+|||++.+||+++++|||++|||+||++
T Consensus 146 ~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~ 225 (639)
T PRK14706 146 SIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNH 225 (639)
T ss_pred EEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHH
Confidence 4566666655422111126899999997 89999999999999999975 67999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006158 341 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 420 (658)
Q Consensus 341 aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~ 420 (658)
||++||+||||+|+||++.++.+ ...++|...|.... ...+.. ..|. ...+|+.+++||++|++
T Consensus 226 ~H~~gi~VilD~v~nH~~~~~~~----l~~~dg~~~y~~~~--------~~~g~~---~~w~-~~~~~~~~~eVr~~l~~ 289 (639)
T PRK14706 226 LHGLGIGVILDWVPGHFPTDESG----LAHFDGGPLYEYAD--------PRKGYH---YDWN-TYIFDYGRNEVVMFLIG 289 (639)
T ss_pred HHHCCCEEEEEecccccCcchhh----hhccCCCcceeccC--------CcCCcC---CCCC-CcccCCCCHHHHHHHHH
Confidence 99999999999999999976532 11233211110000 000111 1122 23489999999999999
Q ss_pred HHHHHHhhcCccEEEEcccCCCc----------------------hHHHHHHH---HHhCCC-EEEEcccCCCCcccccC
Q 006158 421 WLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDYL---EATEPY-FAVGEYWDSLSYTYGEM 474 (658)
Q Consensus 421 ~l~~w~~~~GIDGfRlD~a~~~~----------------------~~~~~~~~---~~~~p~-~lvGE~w~~~~~~~g~m 474 (658)
++++|+++|||||||+|++.+|- ..|++.+. ++.+|+ ++|||.|.+-+.+...
T Consensus 290 ~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~- 368 (639)
T PRK14706 290 SALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVP- 368 (639)
T ss_pred HHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccc-
Confidence 99999999999999999987651 24666543 445687 8999998752111000
Q ss_pred CCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCC-CCcccCCCcceeecccCCcCCccC--
Q 006158 475 DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPP-GVVGWWPSRAVTFIENHDTGSTQG-- 551 (658)
Q Consensus 475 ~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~p~~~vnfl~nHDt~R~~~-- 551 (658)
... +.+++..++..+...+...+.....++.... .... .....+ +....|++|||+.+...
T Consensus 369 -------------~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~-~~lt~~~~y~~-~e~~il~~SHDev~~~k~s 432 (639)
T PRK14706 369 -------------TPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHH-HKLTFFNVYRT-SENYVLAISHDEVVHLKKS 432 (639)
T ss_pred -------------cCC-CCccccEeccHHHHHHHHHhccCchhhhhch-hccchhhhhhc-cccEecCCCCccccCCccc
Confidence 000 1112222222222211111111111110000 0000 000001 11224789999987532
Q ss_pred ---CCCCC----hhHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHHHHHHHHhCccc
Q 006158 552 ---HWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVRKRNKIH 602 (658)
Q Consensus 552 ---~~~~~----~~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~Li~lRk~~pal 602 (658)
....+ .++.+++++++||+||+|+||||+||+ | +.+++|+|++||+++|+|
T Consensus 433 l~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL 512 (639)
T PRK14706 433 MVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDW 512 (639)
T ss_pred hHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHH
Confidence 12212 356889999999999999999999985 4 888999999999999999
Q ss_pred cCCC-----eeEEee---cCCEEEEEEC-----CEEEEEEeCCCCCCCCCCCCeEEEEc
Q 006158 603 CRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGHYEPPSGSQNWSFVTE 648 (658)
Q Consensus 603 ~~G~-----~~~l~~---~~~v~a~~r~-----~~vlvvvnn~~~~~~~~~~~~~~~~~ 648 (658)
..|. ++++.. +++|+||.|. +.+|||+|.+...- .+|++.++
T Consensus 513 ~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~----~~y~ig~p 567 (639)
T PRK14706 513 HRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYR----EQYRIGVP 567 (639)
T ss_pred hhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCc----CCeEECCC
Confidence 8765 555554 3579999982 23778887776322 34555555
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=4.8e-45 Score=430.08 Aligned_cols=348 Identities=20% Similarity=0.298 Sum_probs=233.5
Q ss_pred CCCCcceeEeeeeeccCC------CCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCC--------------------CCCC
Q 006158 261 GTGTGFEILCQGFNWESH------KSGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSPE 314 (658)
Q Consensus 261 ~~~~~y~~~~~~F~W~~~------~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~--------------------~s~~ 314 (658)
.+.+.|++++++|..+.. ...|+|.|++++|||||+||||+|||||||+. .+||
T Consensus 450 ~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynW 529 (1111)
T TIGR02102 450 EDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNW 529 (1111)
T ss_pred cceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccccc
Confidence 455789999999974432 12499999999999999999999999999862 1369
Q ss_pred CCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCC-CCCCCCcccCC
Q 006158 315 GYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVAD 385 (658)
Q Consensus 315 GYd~~Dy~~vDp~~Gt--------~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~-~~w~~~~~~~~ 385 (658)
||+|.+|++++++||+ .+|||+||++||++||+||||+|+|||+..+. |.+. ..|+.+.
T Consensus 530 GYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~~---- 597 (1111)
T TIGR02102 530 GYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHFM---- 597 (1111)
T ss_pred CCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEee----
Confidence 9999999999999998 48999999999999999999999999997653 2221 1121110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHH---HhCCC-EEEE
Q 006158 386 DPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY-FAVG 461 (658)
Q Consensus 386 ~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~---~~~p~-~lvG 461 (658)
...+.... . .+..++|.++++||++|+++++||+++|||||||||++.+++..+++.+.. +++|. +++|
T Consensus 598 ----~~~G~~~~--~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liG 670 (1111)
T TIGR02102 598 ----DADGTPRT--S-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIG 670 (1111)
T ss_pred ----CCCCCccc--c-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEE
Confidence 01111111 0 124578999999999999999999999999999999999888877766544 45788 7999
Q ss_pred cccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHh--------hhh---hhhhhhhhh-CCCCCC
Q 006158 462 EYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSAL--------DRC---EYWRLSDEK-GKPPGV 529 (658)
Q Consensus 462 E~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~--------~~~---~~~~l~~~~-~~~~~~ 529 (658)
|.|+... |..++.. ......++.... ..+.|+..++..++..+ ..+ ....+...+ +.....
T Consensus 671 E~W~~~~---g~~~~~~---~~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~ 743 (1111)
T TIGR02102 671 EGWRTYA---GDEGDPV---QAADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNF 743 (1111)
T ss_pred ecccccC---CCCcccc---cccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccc
Confidence 9998510 0000000 000001111110 12333333333332110 001 011111111 111111
Q ss_pred cccCCCcceeecccCCcCCccCCCCC----C----------hhHHHHHHHHHHhCCCeeEEEcCchhH------------
Q 006158 530 VGWWPSRAVTFIENHDTGSTQGHWRF----P----------GGREMQGYAYILTHPGTPSVFYDHIFS------------ 583 (658)
Q Consensus 530 ~~~~p~~~vnfl~nHDt~R~~~~~~~----~----------~~~~~lA~allltlpGiP~IYyGdE~~------------ 583 (658)
....|.+.|||+++||+.++...+.. + ..|.++|.+++||.+|+||||+|+||.
T Consensus 744 ~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~ 823 (1111)
T TIGR02102 744 EADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRT 823 (1111)
T ss_pred ccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccc
Confidence 12468899999999999987443321 0 137789999999999999999998851
Q ss_pred ------------------------------------------H--------------HHHHHHHHHHHHHhCccccCCCe
Q 006158 584 ------------------------------------------H--------------YRQEIEALLSVRKRNKIHCRSRV 607 (658)
Q Consensus 584 ------------------------------------------W--------------l~~~~~~Li~lRk~~pal~~G~~ 607 (658)
| +++++|.||+|||++|+|+.++.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~ 903 (1111)
T TIGR02102 824 PVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSK 903 (1111)
T ss_pred cccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccch
Confidence 3 58999999999999999977654
Q ss_pred e-------EEeec--------CCEEEEEE----CCEEEEEEeCCCC
Q 006158 608 E-------IVKAE--------RDVYAAII----DEKVAMKLGPGHY 634 (658)
Q Consensus 608 ~-------~l~~~--------~~v~a~~r----~~~vlvvvnn~~~ 634 (658)
. ++... +.+++|.. ++.++|++|....
T Consensus 904 ~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~ 949 (1111)
T TIGR02102 904 ALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDK 949 (1111)
T ss_pred hhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCC
Confidence 2 33322 35677764 3467777776543
No 21
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.4e-44 Score=408.70 Aligned_cols=347 Identities=19% Similarity=0.215 Sum_probs=230.1
Q ss_pred CCCcceeEeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHH
Q 006158 262 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 338 (658)
Q Consensus 262 ~~~~y~~~~~~F~W~~~~~GGdl~Gi~~k-LdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV 338 (658)
..+.|++++++|.-+.....+++.+++++ |+|||+||||+||||||++++ .+|||++.+||+++|+||++++||+||
T Consensus 246 ~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV 325 (730)
T PRK12568 246 PLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFV 325 (730)
T ss_pred CcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHH
Confidence 45688999998864332334689999998 599999999999999999887 589999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 006158 339 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 418 (658)
Q Consensus 339 ~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i 418 (658)
++||++||+||||+|+||++.+... +..|++...|... ++ ..+. ...|.++ .+|+.+|+||++|
T Consensus 326 ~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~~-----d~---~~g~---~~~W~~~-~~N~~~peVr~~l 389 (730)
T PRK12568 326 DACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEHA-----DP---REGM---HRDWNTL-IYNYGRPEVTAYL 389 (730)
T ss_pred HHHHHCCCEEEEEeccccCCccccc----cccCCCccccccC-----CC---cCCc---cCCCCCe-ecccCCHHHHHHH
Confidence 9999999999999999999986531 1223332111100 00 0011 1122233 6899999999999
Q ss_pred HHHHHHHHhhcCccEEEEcccCCCc------------------------hHHHHHHH---HHhCCC-EEEEcccCCCC--
Q 006158 419 KEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYL---EATEPY-FAVGEYWDSLS-- 468 (658)
Q Consensus 419 ~~~l~~w~~~~GIDGfRlD~a~~~~------------------------~~~~~~~~---~~~~p~-~lvGE~w~~~~-- 468 (658)
++++++|+++|||||||+|++..|. .+|++++. ++..|. ++|||.+..-+
T Consensus 390 i~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~v 469 (730)
T PRK12568 390 LGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGV 469 (730)
T ss_pred HHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccc
Confidence 9999999999999999999875431 24776654 445787 89999755321
Q ss_pred ---cccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhh--hhhhCCCCCCcccCCCcceeeccc
Q 006158 469 ---YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRL--SDEKGKPPGVVGWWPSRAVTFIEN 543 (658)
Q Consensus 469 ---~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l--~~~~~~~~~~~~~~p~~~vnfl~n 543 (658)
...|.+.+ ...+++.....+.+.+......+- .+.+.. .+...+ +..+.+..|
T Consensus 470 t~p~~~gGlGF-------------------d~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf--~~~y~~-~e~fvlp~S 527 (730)
T PRK12568 470 TAPISDGGLGF-------------------THKWNMGWMHDTLHYMQRDPAERAHHHSQLTF--GLVYAF-SERFVLPLS 527 (730)
T ss_pred cccccCCCCCc-------------------CcEeCChhHHHHHHHHhhCchhhhhhhhhhhh--hhhhhh-hccEeccCC
Confidence 11122222 122222221111111111100000 000000 001101 123457899
Q ss_pred CCc-----CCccCCCCCCh----hHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHHH
Q 006158 544 HDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEAL 592 (658)
Q Consensus 544 HDt-----~R~~~~~~~~~----~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~L 592 (658)
||. .++...+.++. +..+..++++||.||.|+||+|+||+ | +..++|.|
T Consensus 528 HDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dL 607 (730)
T PRK12568 528 HDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDL 607 (730)
T ss_pred CcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHH
Confidence 999 35555544443 35688899999999999999999974 4 88899999
Q ss_pred HHHHHhCccccC-----CCeeEEeec---CCEEEEEE-C----CEEEEEEeCCCCCCCCCCCCeEEEEcC
Q 006158 593 LSVRKRNKIHCR-----SRVEIVKAE---RDVYAAII-D----EKVAMKLGPGHYEPPSGSQNWSFVTEG 649 (658)
Q Consensus 593 i~lRk~~pal~~-----G~~~~l~~~---~~v~a~~r-~----~~vlvvvnn~~~~~~~~~~~~~~~~~g 649 (658)
++||+++|+|.. ..|+++..+ ++|++|.| + +..+|||.|.+..+ ..+|++.++-
T Consensus 608 n~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~---~~~Y~ig~p~ 674 (730)
T PRK12568 608 NAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQP---HHDYRVGVPR 674 (730)
T ss_pred HHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCC---ccCeEECCCC
Confidence 999999999954 457777654 37999988 2 13244555555555 3446665553
No 22
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.1e-44 Score=394.68 Aligned_cols=332 Identities=14% Similarity=0.156 Sum_probs=235.6
Q ss_pred eEeeeeeccCCCCC-CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 006158 268 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346 (658)
Q Consensus 268 ~~~~~F~W~~~~~G-Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gi 346 (658)
+.+..|. |+.++| |+|.|++++ ||++ ||++|||+|+|+++++|||+++||++|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4555665 444333 667777766 9999 7999999999999999999999999999999999999999997 7
Q ss_pred EEEEEeccccccCCCCCCC-----CCcccCCCCCC-----CCCCcccCC----------CC---C--CCCCCCCCCCC-C
Q 006158 347 KILGDVVLNHRCAHYQNQN-----GVWNIFGGRLN-----WDDRAVVAD----------DP---H--FQGRGNKSSGD-N 400 (658)
Q Consensus 347 kVIlD~V~NHt~~~~~~~~-----g~~~~~~g~~~-----w~~~~~~~~----------~~---~--f~~~~~~~~~~-~ 400 (658)
|||+|+|+||||..|+|++ +.-++|.+.+- |.+...... .+ . +........|. +
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 9999999999999999742 22344543311 322111000 01 1 11111111222 3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch--------------HHHHHHHHH-hCCC-EEEEccc
Q 006158 401 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--------------GYVKDYLEA-TEPY-FAVGEYW 464 (658)
Q Consensus 401 ~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~--------------~~~~~~~~~-~~p~-~lvGE~w 464 (658)
.+.+||||+.||.|+++|.+++++|+ +.||||||+||+..+|+ ++++.+.+- ..|. ++++|++
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 48899999999999999999999999 89999999999954432 244444442 3455 8999997
Q ss_pred CCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccC
Q 006158 465 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 544 (658)
Q Consensus 465 ~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nH 544 (658)
...++. . ...+....+|+|++...+-.++..++...+.+.+.. .|..++|||+||
T Consensus 233 ~~~~~~-------~-----------~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~-------~p~~~~nfL~sH 287 (470)
T TIGR03852 233 EHYTIQ-------F-----------KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK-------SPMKQFTTLDTH 287 (470)
T ss_pred hhcccc-------c-----------ccccceeEEccCccchhhHHHhhccCHHHHHHHHHh-------CcccceEEeecC
Confidence 542211 0 001234578999998888887777766666555432 345567999999
Q ss_pred CcCCc--------------------------c---------------------CCCCCChhHHHHHHHHHHhCCCeeEEE
Q 006158 545 DTGST--------------------------Q---------------------GHWRFPGGREMQGYAYILTHPGTPSVF 577 (658)
Q Consensus 545 Dt~R~--------------------------~---------------------~~~~~~~~~~~lA~allltlpGiP~IY 577 (658)
|.--+ . ..++.+.++..+|.++||++||+|.||
T Consensus 288 Dgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iY 367 (470)
T TIGR03852 288 DGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVY 367 (470)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEE
Confidence 99211 0 112235678899999999999999999
Q ss_pred cCchhH---------------------H------------HHHHHHHHHHHHHhCccccC-CCeeEEeecCCEEEEEE--
Q 006158 578 YDHIFS---------------------H------------YRQEIEALLSVRKRNKIHCR-SRVEIVKAERDVYAAII-- 621 (658)
Q Consensus 578 yGdE~~---------------------W------------l~~~~~~Li~lRk~~pal~~-G~~~~l~~~~~v~a~~r-- 621 (658)
||+|++ | +..-+.+||++|+++||+.. |.+++...++.++++.|
T Consensus 368 y~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~ 447 (470)
T TIGR03852 368 YVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRTN 447 (470)
T ss_pred echhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEEc
Confidence 999874 2 55556668999999999976 99987777889999876
Q ss_pred ---CCEEEEEEeCCCC
Q 006158 622 ---DEKVAMKLGPGHY 634 (658)
Q Consensus 622 ---~~~vlvvvnn~~~ 634 (658)
++++.+++|-++.
T Consensus 448 ~~~~~~~~~~~n~~~~ 463 (470)
T TIGR03852 448 KDGGNKAILTANLKTK 463 (470)
T ss_pred CCCCceEEEEEecCCC
Confidence 2345556655544
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-43 Score=420.10 Aligned_cols=337 Identities=16% Similarity=0.209 Sum_probs=224.5
Q ss_pred CCcceeEeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 006158 263 GTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 339 (658)
Q Consensus 263 ~~~y~~~~~~F~W~~~~~GGdl~Gi~~k-LdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~ 339 (658)
.+.|++++.+|.- +|++++++++ |||||+||||+||||||++++ .+|||++++||+++++|||++|||+||+
T Consensus 748 ~~IYEvHvgsf~~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd 822 (1224)
T PRK14705 748 MSVYEVHLGSWRL-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVD 822 (1224)
T ss_pred cEEEEEEeccccc-----CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHH
Confidence 4689999998852 5789999988 599999999999999999887 6899999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006158 340 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 340 ~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
+||++||+||||+|+||++.+... ...|++...|. +..........| +...||+++++||++|+
T Consensus 823 ~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~-----------~~d~~~g~~~~W-g~~~fn~~~~eVr~fli 886 (1224)
T PRK14705 823 SLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYE-----------HADPALGEHPDW-GTLIFDFGRTEVRNFLV 886 (1224)
T ss_pred HHHHCCCEEEEEeccccCCcchhh----hhhcCCCcccc-----------cCCcccCCCCCC-CCceecCCCHHHHHHHH
Confidence 999999999999999999876421 11233321111 000000001112 23469999999999999
Q ss_pred HHHHHHHhhcCccEEEEcccCCC------------------------chHHHHHHHHH---hCCC-EEEEcccCCCC---
Q 006158 420 EWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLEA---TEPY-FAVGEYWDSLS--- 468 (658)
Q Consensus 420 ~~l~~w~~~~GIDGfRlD~a~~~------------------------~~~~~~~~~~~---~~p~-~lvGE~w~~~~--- 468 (658)
++++||+++|||||||+|++..| ...|++.+.+. ..|. ++|+|.+..-+
T Consensus 887 ~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt 966 (1224)
T PRK14705 887 ANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVT 966 (1224)
T ss_pred HHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCcc
Confidence 99999999999999999998665 13477765443 4677 89999876421
Q ss_pred --cccccCCCcchhhH---HHHHHHHHhcCCCccccCchhhHHHHHHhhhhhh-hhhhhhhCCCCCCcccCCCcceeecc
Q 006158 469 --YTYGEMDHNQDAHR---QRIIDWINAASGTAGAFDVTTKGILHSALDRCEY-WRLSDEKGKPPGVVGWWPSRAVTFIE 542 (658)
Q Consensus 469 --~~~g~m~y~~~~~~---~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~p~~~vnfl~ 542 (658)
...|.+.|...+.. ..+..|+.... +........+ ..+... ....+.+..
T Consensus 967 ~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp-------------~~r~~~~~~ltf~~~ya-----------~~e~fvl~~ 1022 (1224)
T PRK14705 967 APTSHGGLGFGLKWNMGWMHDSLKYASEDP-------------INRKWHHGTITFSLVYA-----------FTENFLLPI 1022 (1224)
T ss_pred ccccCCCccCCcEecchhhHHHHHHhhhCc-------------chhhcccchHHHHHHHH-----------hhcCEeccc
Confidence 12232322222111 12222332110 0000000000 001000 011233466
Q ss_pred cCCcCC-----ccCCCCCC----hhHHHHHHHHHHhCCCeeEEEcCchhH------------H----------HHHHHHH
Q 006158 543 NHDTGS-----TQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEA 591 (658)
Q Consensus 543 nHDt~R-----~~~~~~~~----~~~~~lA~allltlpGiP~IYyGdE~~------------W----------l~~~~~~ 591 (658)
|||... +.....++ ....+++++++|++||+|+||||+||+ | +..++|.
T Consensus 1023 SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rd 1102 (1224)
T PRK14705 1023 SHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKD 1102 (1224)
T ss_pred ccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHH
Confidence 899742 12222222 235688899999999999999999985 4 8889999
Q ss_pred HHHHHHhCccccC-----CCeeEEee---cCCEEEEEE----CCEEEEEEeCCCCCCCCCCCCeEEEEc
Q 006158 592 LLSVRKRNKIHCR-----SRVEIVKA---ERDVYAAII----DEKVAMKLGPGHYEPPSGSQNWSFVTE 648 (658)
Q Consensus 592 Li~lRk~~pal~~-----G~~~~l~~---~~~v~a~~r----~~~vlvvvnn~~~~~~~~~~~~~~~~~ 648 (658)
|++||+++|+|.. ..++++.. +++|++|.| ++.++||+|. +..+ ..+|++.++
T Consensus 1103 Ln~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nf-tp~~---~~~y~igvp 1167 (1224)
T PRK14705 1103 LNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINF-SGGP---HKGYTLGVP 1167 (1224)
T ss_pred HHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcC-CCCC---ccCceECCC
Confidence 9999999999953 45677743 357999988 1345555554 4444 234666555
No 24
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=3.7e-43 Score=384.94 Aligned_cols=330 Identities=15% Similarity=0.152 Sum_probs=233.8
Q ss_pred eEeeeeeccCCCCCCcHHHHHHhHH-HHHHcCCCEEEeCCCCC-CC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 006158 268 ILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-SV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 344 (658)
Q Consensus 268 ~~~~~F~W~~~~~GGdl~Gi~~kLd-YLk~LGv~~I~L~Pi~~-~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~ 344 (658)
+.+-.|. |+.+ +|||+||+++|| ||++| |++|||+|+|+ ++ +++||+++||++|||+|||++||++|++
T Consensus 5 ~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 5 VQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred eEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 3444443 3332 489999999999 59999 99999999994 43 6899999999999999999999999995
Q ss_pred CCEEEEEeccccccCCCCCC-----CCCcccCCCCCCCCCC-----cccCC-CCCCC-------------CCCCCCCCCC
Q 006158 345 GMKILGDVVLNHRCAHYQNQ-----NGVWNIFGGRLNWDDR-----AVVAD-DPHFQ-------------GRGNKSSGDN 400 (658)
Q Consensus 345 GikVIlD~V~NHt~~~~~~~-----~g~~~~~~g~~~w~~~-----~~~~~-~~~f~-------------~~~~~~~~~~ 400 (658)
||+||+|+|+||||..|+|+ ++.-++|.+.+-|.+. ..+.+ ...|. .......|..
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 99999999999999999973 3333455443223221 00000 11111 1111122333
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch-------------HHHHHHHHHhCC--CEEEEccc
Q 006158 401 -FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEATEP--YFAVGEYW 464 (658)
Q Consensus 401 -~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~-------------~~~~~~~~~~~p--~~lvGE~w 464 (658)
...+||||+.||+|+++|++++++|+ +.|||||||||+.++++ ++++.+.+.++. ..+++|+|
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 47899999999999999999999999 78999999999976543 256555443332 26899987
Q ss_pred CCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecccC
Q 006158 465 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 544 (658)
Q Consensus 465 ~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nH 544 (658)
....- + . .+ .+....+|||++...+..++..++...+...+.. .|..++|||+||
T Consensus 236 ~y~~~--~-~---------~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYYKT--Q-I---------EI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDTH 290 (495)
T ss_pred cccCc--c-c---------cc------cccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeecC
Confidence 64210 0 0 00 1246789999999888888777665555444322 366778999999
Q ss_pred CcCCc----------cCCCC--------------------------------------------CChhHHHHHHHHHHhC
Q 006158 545 DTGST----------QGHWR--------------------------------------------FPGGREMQGYAYILTH 570 (658)
Q Consensus 545 Dt~R~----------~~~~~--------------------------------------------~~~~~~~lA~allltl 570 (658)
|.-.+ ..++. .+..+..+|.+++|++
T Consensus 291 DgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~ 370 (495)
T PRK13840 291 DGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFA 370 (495)
T ss_pred CCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcC
Confidence 99765 11110 1124788999999999
Q ss_pred CCeeEEEcCchhH-----------------------H----------HHHHHHHHHHHHHhCccccCCCeeEEeecCCEE
Q 006158 571 PGTPSVFYDHIFS-----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVY 617 (658)
Q Consensus 571 pGiP~IYyGdE~~-----------------------W----------l~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~ 617 (658)
||||.||||++++ | +++.+++||++|+++||| .|.+++...+++.+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~~ 449 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTSL 449 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCeE
Confidence 9999999999863 3 888899999999999999 58888766666666
Q ss_pred EEEE---CCEEEEEEeCC
Q 006158 618 AAII---DEKVAMKLGPG 632 (658)
Q Consensus 618 a~~r---~~~vlvvvnn~ 632 (658)
+..+ +....+.+|-.
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 450 TLSWTAGDSSASLTLDFA 467 (495)
T ss_pred EEEEecCCceEEEEEEcc
Confidence 5544 23444555543
No 25
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.7e-42 Score=393.51 Aligned_cols=333 Identities=17% Similarity=0.178 Sum_probs=216.3
Q ss_pred CCcceeEeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 006158 263 GTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 339 (658)
Q Consensus 263 ~~~y~~~~~~F~W~~~~~GGdl~Gi~~k-LdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~ 339 (658)
.+.|++++..|. ....-|++++++++ |||||+||||+||||||+++. .+|||++++||+|+++|||+++||+||+
T Consensus 396 ~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd 473 (897)
T PLN02960 396 LRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVD 473 (897)
T ss_pred cEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHH
Confidence 356666666542 21223799999976 999999999999999999876 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006158 340 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 340 ~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
+||++||+||||+|+||++.++.. + ...|+|..++ +|... .. .....++...||+.+++||++|+
T Consensus 474 ~aH~~GI~VILDvV~NH~~~d~~~--~-L~~FDG~~~~----------Yf~~~-~~-g~~~~WG~~~fNy~~~eVr~fLl 538 (897)
T PLN02960 474 EAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGSNDC----------YFHSG-KR-GHHKRWGTRMFKYGDHEVLHFLL 538 (897)
T ss_pred HHHHCCCEEEEEecccccCCcccc--c-hhhcCCCccc----------eeecC-CC-CccCCCCCcccCCCCHHHHHHHH
Confidence 999999999999999999987531 1 1223332111 11110 00 00112234679999999999999
Q ss_pred HHHHHHHhhcCccEEEEcccCCCc-------------------------hHHHHHH---HHHhCCC-EEEEcccCCCCc-
Q 006158 420 EWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKDY---LEATEPY-FAVGEYWDSLSY- 469 (658)
Q Consensus 420 ~~l~~w~~~~GIDGfRlD~a~~~~-------------------------~~~~~~~---~~~~~p~-~lvGE~w~~~~~- 469 (658)
+++++|+++|||||||+|++..|- ..|++.+ +.+..|. ++|+|.....+-
T Consensus 539 sna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~v 618 (897)
T PLN02960 539 SNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGL 618 (897)
T ss_pred HHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCc
Confidence 999999999999999999986421 1244443 3344577 899997654221
Q ss_pred ----ccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhh--hhhhhhhhhCCCCCCcccCCCcceeeccc
Q 006158 470 ----TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIEN 543 (658)
Q Consensus 470 ----~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~p~~~vnfl~n 543 (658)
..|.+++. ...++.....+.+++... .-+.+....+.... ....+.+.++|++|
T Consensus 619 t~P~~~GGLGFD-------------------YkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~-~~~~~~~~v~Y~En 678 (897)
T PLN02960 619 CEPTSQGGLGFD-------------------YYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVK-NKENADKMLSYAEN 678 (897)
T ss_pred cccCCCCCCCcc-------------------cccCCCcHHHHHHHHHhCcCCCCChhccEeeecc-CcCCcceEEEEecC
Confidence 11222221 111222111122222110 01111111111110 12345678999999
Q ss_pred CCcC-----CccCCCCCC-------hh----------HHHHHHHHHHhCCCeeEEEcCchhH------------------
Q 006158 544 HDTG-----STQGHWRFP-------GG----------REMQGYAYILTHPGTPSVFYDHIFS------------------ 583 (658)
Q Consensus 544 HDt~-----R~~~~~~~~-------~~----------~~~lA~allltlpGiP~IYyGdE~~------------------ 583 (658)
||+. ++...+... .. ....+++++++ ||+|++|||+||+
T Consensus 679 HDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~ 757 (897)
T PLN02960 679 HNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSL 757 (897)
T ss_pred cCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCcccccc
Confidence 9992 222222111 00 11123445554 8999999999853
Q ss_pred ----H----------HHHHHHHHHHHHHhCccccCCCeeEEee--cCCEEEEEECCEEEEEEeCCCC
Q 006158 584 ----H----------YRQEIEALLSVRKRNKIHCRSRVEIVKA--ERDVYAAIIDEKVAMKLGPGHY 634 (658)
Q Consensus 584 ----W----------l~~~~~~Li~lRk~~pal~~G~~~~l~~--~~~v~a~~r~~~vlvvvnn~~~ 634 (658)
| +.+++|.|++||+++|+|..|...+... ++.|++|.|+ .+++|+|.+..
T Consensus 758 s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~ 823 (897)
T PLN02960 758 ANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPT 823 (897)
T ss_pred ccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCC
Confidence 4 8889999999999999998776544433 3479999995 57788887764
No 26
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=399.20 Aligned_cols=368 Identities=19% Similarity=0.241 Sum_probs=230.5
Q ss_pred HHhhhhcccCCCCCCccccccccCCCCCCCCCCCCCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCC
Q 006158 228 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 307 (658)
Q Consensus 228 av~Yqif~drf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi 307 (658)
+|+|||+||||+.++..+ ...++ + +|||+||+++||||++|||++|||+||
T Consensus 1 ~viyqi~~~~f~d~~~~~--------------------------~~~~~--G-~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi 51 (505)
T COG0366 1 AVIYQIYPDRFADSNGSN--------------------------GPDYD--G-GGDLKGITEKLDYLKELGVDAIWLSPI 51 (505)
T ss_pred CcEEEEechhhcCCCCCC--------------------------ccCCC--C-cccHHhHHHhhhHHHHhCCCEEEeCCC
Confidence 589999999999988653 00111 0 499999999999999999999999999
Q ss_pred CCC-CCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCc----ccCC-CCCCCCCCc
Q 006158 308 TES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW----NIFG-GRLNWDDRA 381 (658)
Q Consensus 308 ~~~-~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~----~~~~-g~~~w~~~~ 381 (658)
+++ .++|||++.||+.|||+|||++||++||++||++||+||+|+|+|||+..|+++.... ++.. ..+.|....
T Consensus 52 ~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~ 131 (505)
T COG0366 52 FESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPD 131 (505)
T ss_pred CCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCc
Confidence 999 6999999999999999999999999999999999999999999999999998532111 1111 113343211
Q ss_pred -----ccCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch-----
Q 006158 382 -----VVADDPHFQGRGN-------KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----- 444 (658)
Q Consensus 382 -----~~~~~~~f~~~~~-------~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~----- 444 (658)
.......|.+..+ +........+|+||+.|++||+++.+++++|+ ++||||||+|++++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~ 210 (505)
T COG0366 132 PDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLP 210 (505)
T ss_pred ccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCC
Confidence 1111222222221 22233458899999999999999999999999 69999999999998887
Q ss_pred ------HHHHHH---HHHhCCC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHH---Hh
Q 006158 445 ------GYVKDY---LEATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHS---AL 511 (658)
Q Consensus 445 ------~~~~~~---~~~~~p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~---~~ 511 (658)
.++..+ ++..++. +..++.+.......+....... .. .......+...|++.....-.. ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
T COG0366 211 PSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDFA-----DN-TSFTNPELSMLFDFSHVGLDFEALAPL 284 (505)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhhh-----hc-cchhhhhHhhccccccccccccccCcc
Confidence 333333 3333332 2222333321111110000000 00 0000001112222221100000 00
Q ss_pred hhhhhhhhhhhhCCCCCCcccCCCcceeecccCCcCCccCCCCCCh----hHHHHHHHHHHhCCCeeEEEcCchhH----
Q 006158 512 DRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS---- 583 (658)
Q Consensus 512 ~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R~~~~~~~~~----~~~~lA~allltlpGiP~IYyGdE~~---- 583 (658)
...........+... ..........|..|||++|+.+....+. ...++++++++++||+|+||||+|.+
T Consensus 285 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~ 361 (505)
T COG0366 285 DAEELKEILADWPLA---VNLNDGWNNLFLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNF 361 (505)
T ss_pred cHHHHHHHHHHHHhh---hccccCchhhhhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCC
Confidence 000000000000000 0000112234799999999998876554 56788888899999999999998620
Q ss_pred --------------------------------------------H------------------------HHHHHHHHHHH
Q 006158 584 --------------------------------------------H------------------------YRQEIEALLSV 595 (658)
Q Consensus 584 --------------------------------------------W------------------------l~~~~~~Li~l 595 (658)
| ++.++++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~ 441 (505)
T COG0366 362 KDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIAL 441 (505)
T ss_pred CCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHH
Confidence 1 77899999999
Q ss_pred HHhCc-cccCCCeeEEeecC--CEEEEEE--CCEEEEEEeCCCC
Q 006158 596 RKRNK-IHCRSRVEIVKAER--DVYAAII--DEKVAMKLGPGHY 634 (658)
Q Consensus 596 Rk~~p-al~~G~~~~l~~~~--~v~a~~r--~~~vlvvvnn~~~ 634 (658)
|+.+. .+..|......... .++++.| .++.+++++|.+.
T Consensus 442 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 442 RKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 99984 55667444444443 5888887 3344555555544
No 27
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=5.2e-42 Score=397.50 Aligned_cols=340 Identities=16% Similarity=0.226 Sum_probs=224.1
Q ss_pred CCcHHHHHH-------hHHHHHHcCCCEEEeCCCCCCC------------------------------------------
Q 006158 281 GRWYMELKE-------KATELSSLGFSVIWLPPPTESV------------------------------------------ 311 (658)
Q Consensus 281 GGdl~Gi~~-------kLdYLk~LGv~~I~L~Pi~~~~------------------------------------------ 311 (658)
.|+|.|+++ +|+||++||||+|+|||||+..
T Consensus 275 rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (898)
T TIGR02103 275 RGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELNPDSKSSEFAGYCDSGSQLK 354 (898)
T ss_pred CceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 356666655 4777778899999999998752
Q ss_pred ----------------------CCCCCCcccCCCCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccccccCCCC
Q 006158 312 ----------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 362 (658)
Q Consensus 312 ----------------------s~~GYd~~Dy~~vDp~~Gt~-------edlk~LV~~aH~~GikVIlD~V~NHt~~~~~ 362 (658)
.||||+|..|+.++..|++. .|||+||++||++||+||||+|+|||+..++
T Consensus 355 ~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~ 434 (898)
T TIGR02103 355 QNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGP 434 (898)
T ss_pred ccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHHCCCEEEEEeecccccccCc
Confidence 27999999999999999984 6999999999999999999999999998765
Q ss_pred CCCCCcccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCC
Q 006158 363 NQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441 (658)
Q Consensus 363 ~~~g~~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~ 441 (658)
..... +... +.|+.+. ...+... ......+++.++++||++|++++++|+++|||||||||++.+
T Consensus 435 ~~~s~---ld~~~P~YY~r~--------~~~G~~~---n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~ 500 (898)
T TIGR02103 435 NDRSV---LDKIVPGYYHRL--------NEDGGVE---NSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGH 500 (898)
T ss_pred cCccc---ccccCcHhhEee--------CCCCCee---cCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhh
Confidence 33221 2111 1111110 1111111 122345789999999999999999999999999999999999
Q ss_pred CchHHHHHHHHH---hCCC-EEEEcccCCCC------cccc--------cCCCcchhhHHHHHHH--HHh------cCCC
Q 006158 442 FWGGYVKDYLEA---TEPY-FAVGEYWDSLS------YTYG--------EMDHNQDAHRQRIIDW--INA------ASGT 495 (658)
Q Consensus 442 ~~~~~~~~~~~~---~~p~-~lvGE~w~~~~------~~~g--------~m~y~~~~~~~~i~~~--~~~------~~~~ 495 (658)
++.++|+++.++ ++|+ +++||.|+... +..+ .+.+++|.+|++|++- +.. ..|+
T Consensus 501 ~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf 580 (898)
T TIGR02103 501 HPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGF 580 (898)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccccccccccCcce
Confidence 999999886554 5788 89999998421 1111 1456666677777641 111 1111
Q ss_pred cccc-Cch----------------hhHHHHHHhhhhh-hhhhhhhhC---------C--CCCCcccCCCcceeecccCCc
Q 006158 496 AGAF-DVT----------------TKGILHSALDRCE-YWRLSDEKG---------K--PPGVVGWWPSRAVTFIENHDT 546 (658)
Q Consensus 496 ~~~f-df~----------------~~~~i~~~~~~~~-~~~l~~~~~---------~--~~~~~~~~p~~~vnfl~nHDt 546 (658)
.+.. ..+ ....++..+.++- ...+....+ . .+......|.+.+||++.||+
T Consensus 581 ~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN 660 (898)
T TIGR02103 581 GSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDN 660 (898)
T ss_pred ecCcccCCcccccccchhhhhhhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCC
Confidence 1111 000 0011211111110 000000000 0 001122467899999999999
Q ss_pred CCccCCCC------CC----hhHHHHHHHHHHhCCCeeEEEcCchhH---------------------------------
Q 006158 547 GSTQGHWR------FP----GGREMQGYAYILTHPGTPSVFYDHIFS--------------------------------- 583 (658)
Q Consensus 547 ~R~~~~~~------~~----~~~~~lA~allltlpGiP~IYyGdE~~--------------------------------- 583 (658)
..+-..+. .+ .++.++|++++|+.+|+|+|+.|+||-
T Consensus 661 ~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~~~~~glp 740 (898)
T TIGR02103 661 QTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDNNWNVGLP 740 (898)
T ss_pred ccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheecccccccccccCCC
Confidence 86533221 11 234579999999999999999999961
Q ss_pred --------H---------------------HHHHHHHHHHHHHhCccccCCCe-------eEEeec----CCEEEEEEC-
Q 006158 584 --------H---------------------YRQEIEALLSVRKRNKIHCRSRV-------EIVKAE----RDVYAAIID- 622 (658)
Q Consensus 584 --------W---------------------l~~~~~~Li~lRk~~pal~~G~~-------~~l~~~----~~v~a~~r~- 622 (658)
| +.++++.||+||+++|+|+-++. .++... .+++++..+
T Consensus 741 ~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d 820 (898)
T TIGR02103 741 RADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDD 820 (898)
T ss_pred cccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcC
Confidence 2 68999999999999999986643 333332 588888752
Q ss_pred -------------CEEEEEEeCCCC
Q 006158 623 -------------EKVAMKLGPGHY 634 (658)
Q Consensus 623 -------------~~vlvvvnn~~~ 634 (658)
+.++|++|.+..
T Consensus 821 ~~~~~~~~~d~~~~~ivVv~Na~~~ 845 (898)
T TIGR02103 821 GGIQAGASLDPRYDGIVVIFNARPE 845 (898)
T ss_pred CccccccccccccCeEEEEEcCCCc
Confidence 236777776544
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=1.2e-39 Score=370.96 Aligned_cols=341 Identities=17% Similarity=0.218 Sum_probs=222.2
Q ss_pred CcceeEeeeeeccCCCCCCcHHHHH-HhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 006158 264 TGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNK 340 (658)
Q Consensus 264 ~~y~~~~~~F~W~~~~~GGdl~Gi~-~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~ 340 (658)
..|++++..+. ....-|++.+++ ++|+|||+||||+||||||+++. .+|||+++||++++++|||++|||+||++
T Consensus 231 ~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 231 RIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDK 308 (758)
T ss_pred EEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHH
Confidence 46666666442 222237899975 56999999999999999999987 57999999999999999999999999999
Q ss_pred HHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006158 341 FHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 420 (658)
Q Consensus 341 aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~ 420 (658)
||++||+||||+|+||++.++.. | ...|++. ...+|+..+ .......+...+|+++++||++|++
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~----------~~~Yf~~~~--~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGT----------DGSYFHSGP--RGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred HHHCCCEEEEEeccccccccccc--c-ccccCCC----------CccccccCC--CCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999976531 1 1123221 011222111 0111112345799999999999999
Q ss_pred HHHHHHhhcCccEEEEcccCCCc-------h-------------------HHHHH---HHHHhCCC-EEEEcccCCCCc-
Q 006158 421 WLCWLRNEIGYDGWRLDFVRGFW-------G-------------------GYVKD---YLEATEPY-FAVGEYWDSLSY- 469 (658)
Q Consensus 421 ~l~~w~~~~GIDGfRlD~a~~~~-------~-------------------~~~~~---~~~~~~p~-~lvGE~w~~~~~- 469 (658)
++++|+++|||||||||++..|- . .|++. .+.+..|. ++|||.+.+-+.
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999987552 0 13443 34455787 899998765321
Q ss_pred ----ccccCCCcchhhH---HHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCCcceeecc
Q 006158 470 ----TYGEMDHNQDAHR---QRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 542 (658)
Q Consensus 470 ----~~g~m~y~~~~~~---~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~vnfl~ 542 (658)
..|.+++...+.. +....|+.... ...+.+....... ....+..+.|.|.+
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~--------------------d~~~~~~~l~~sl--~~r~~~E~~I~y~e 511 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKR--------------------DEDWSMGDIVHTL--TNRRYTEKCVAYAE 511 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCC--------------------CcccCHHHHHHHH--hcccccCceEeccC
Confidence 1222222221111 11112221110 0111111111000 01124457889999
Q ss_pred cCCcCCcc--C------------CCCCCh------hH----HHHHHHHHHhCCCe-eEEEcCchhH--------------
Q 006158 543 NHDTGSTQ--G------------HWRFPG------GR----EMQGYAYILTHPGT-PSVFYDHIFS-------------- 583 (658)
Q Consensus 543 nHDt~R~~--~------------~~~~~~------~~----~~lA~allltlpGi-P~IYyGdE~~-------------- 583 (658)
|||+...- + .+.... .| .++..+++|++||. +++|+|.||+
T Consensus 512 SHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~w 591 (758)
T PLN02447 512 SHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGW 591 (758)
T ss_pred CcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccccccc
Confidence 99997541 1 111110 11 24556789999999 7999999874
Q ss_pred --------H------------HHHHHHHHHHHHHhCccccCCCeeEEe---ecCCEEEEEECCEEEEEEeCCCCCCCCCC
Q 006158 584 --------H------------YRQEIEALLSVRKRNKIHCRSRVEIVK---AERDVYAAIIDEKVAMKLGPGHYEPPSGS 640 (658)
Q Consensus 584 --------W------------l~~~~~~Li~lRk~~pal~~G~~~~l~---~~~~v~a~~r~~~vlvvvnn~~~~~~~~~ 640 (658)
| +.+|+|.|++|++++|+|..| +.++. .++.|++|.|++ +|+|+|...... -
T Consensus 592 s~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~-~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p~~s---~ 666 (758)
T PLN02447 592 SYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSE-HQYVSRKDEGDKVIVFERGD-LVFVFNFHPTNS---Y 666 (758)
T ss_pred CcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCC-CceeeeecCCCCEEEEEeCC-eEEEEeCCCCCC---C
Confidence 3 778999999999999999765 44444 345899999974 666666654333 2
Q ss_pred CCeEEEEc
Q 006158 641 QNWSFVTE 648 (658)
Q Consensus 641 ~~~~~~~~ 648 (658)
..|++.++
T Consensus 667 ~~Y~igvp 674 (758)
T PLN02447 667 SDYRVGCD 674 (758)
T ss_pred CCcEECCC
Confidence 23555555
No 29
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=2.2e-39 Score=374.45 Aligned_cols=347 Identities=16% Similarity=0.198 Sum_probs=226.3
Q ss_pred CCCCcceeEeeeeeccCC----CCCCcHHHHHHh-------HHHHHHcCCCEEEeCCCCCCC------------------
Q 006158 261 GTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV------------------ 311 (658)
Q Consensus 261 ~~~~~y~~~~~~F~W~~~----~~GGdl~Gi~~k-------LdYLk~LGv~~I~L~Pi~~~~------------------ 311 (658)
.+.+.|++++++|.-... ...|+|.|++++ |+||++||||+|+|||+|+..
T Consensus 338 ~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~ 417 (970)
T PLN02877 338 SDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELE 417 (970)
T ss_pred cccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhc
Confidence 345778888888864221 234889888876 677777799999999999741
Q ss_pred ---------------------CCCCCCcccCCCCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccccccCCCCC
Q 006158 312 ---------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 363 (658)
Q Consensus 312 ---------------------s~~GYd~~Dy~~vDp~~Gt~-------edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~ 363 (658)
.||||+|..|++++.+|++. .|||+||++||++||+||||+|+|||+..+++
T Consensus 418 ~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 418 KLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred cccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 67999999999999999983 48999999999999999999999999876553
Q ss_pred CCCCcccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC
Q 006158 364 QNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 364 ~~g~~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
... +.+... +.|+.+. +..+.... .....+.+.++++||++|+++++||+++|||||||||++.++
T Consensus 498 ~~~--s~ld~~vP~YY~r~--------~~~G~~~n---s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 498 DEN--SVLDKIVPGYYLRR--------NSDGFIEN---STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred chh--hcccCCCCCceEEE--------CCCCCccc---CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 211 112111 1122111 11111111 122345678999999999999999999999999999999999
Q ss_pred chHHHHH---HHHHhC--------CC-EEEEcccCCCC---c------cc----c-cCCCcchhhHHHHHH---HHH-hc
Q 006158 443 WGGYVKD---YLEATE--------PY-FAVGEYWDSLS---Y------TY----G-EMDHNQDAHRQRIID---WIN-AA 492 (658)
Q Consensus 443 ~~~~~~~---~~~~~~--------p~-~lvGE~w~~~~---~------~~----g-~m~y~~~~~~~~i~~---~~~-~~ 492 (658)
+.+.+.+ .+++++ |. +++||.|+... . .+ | .+.+++|.+|+.|++ |.. ..
T Consensus 565 ~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~ 644 (970)
T PLN02877 565 MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQ 644 (970)
T ss_pred cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCC
Confidence 9886654 344552 55 89999997421 0 01 0 256666777777774 211 11
Q ss_pred CCCccc-cCch-----------------hhHHHHHHhhhhhhhh--hhhhhC-----C-------CCCCcccCCCcceee
Q 006158 493 SGTAGA-FDVT-----------------TKGILHSALDRCEYWR--LSDEKG-----K-------PPGVVGWWPSRAVTF 540 (658)
Q Consensus 493 ~~~~~~-fdf~-----------------~~~~i~~~~~~~~~~~--l~~~~~-----~-------~~~~~~~~p~~~vnf 540 (658)
.|+.+. +.-+ +...++..+.+ .... +.+..+ . .+.-....|.+.|||
T Consensus 645 qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaG-nl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InY 723 (970)
T PLN02877 645 QGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAG-NLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINY 723 (970)
T ss_pred CceecccccCCcccccccchhhhhhhhhhHHHHHHHhcc-chhccccccccccccccccccccCCcccccccCHHHheee
Confidence 122211 1000 01112222111 1110 000000 0 000122358899999
Q ss_pred cccCCcCCccCCCC----C--C----hhHHHHHHHHHHhCCCeeEEEcCchh--------------------HH------
Q 006158 541 IENHDTGSTQGHWR----F--P----GGREMQGYAYILTHPGTPSVFYDHIF--------------------SH------ 584 (658)
Q Consensus 541 l~nHDt~R~~~~~~----~--~----~~~~~lA~allltlpGiP~IYyGdE~--------------------~W------ 584 (658)
++.||+..+-..+. . + .++.++|++++|+.+|+|+|+.|+|| +|
T Consensus 724 vs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn 803 (970)
T PLN02877 724 VSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNN 803 (970)
T ss_pred eeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCc
Confidence 99999986543321 0 1 24467999999999999999999996 12
Q ss_pred ------------------------------------HHHHHHHHHHHHHhCccccCCCee-------EEeec----CCEE
Q 006158 585 ------------------------------------YRQEIEALLSVRKRNKIHCRSRVE-------IVKAE----RDVY 617 (658)
Q Consensus 585 ------------------------------------l~~~~~~Li~lRk~~pal~~G~~~-------~l~~~----~~v~ 617 (658)
..+++|.||+||+++|+|+-++.. ++... .+++
T Consensus 804 ~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi 883 (970)
T PLN02877 804 WGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVI 883 (970)
T ss_pred cccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEE
Confidence 378899999999999999876433 33332 3788
Q ss_pred EEEE
Q 006158 618 AAII 621 (658)
Q Consensus 618 a~~r 621 (658)
++..
T Consensus 884 ~~~i 887 (970)
T PLN02877 884 VMSI 887 (970)
T ss_pred EEEE
Confidence 8875
No 30
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1e-37 Score=342.83 Aligned_cols=350 Identities=12% Similarity=0.062 Sum_probs=254.0
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCC---------C-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTES---------V-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~---------~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
|-....+||++|||++|||+|++++ + .+.|||++| +.|||.|||++||++|+++||++|||||+|+|+|
T Consensus 75 ~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpn 153 (688)
T TIGR02455 75 ADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPA 153 (688)
T ss_pred cChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3456689999999999999999999 5 479999999 5999999999999999999999999999999999
Q ss_pred cccCCCCC---CCCCcccCCCCC-----------CCCCCccc---------------------CC--CCCCCCC-----C
Q 006158 356 HRCAHYQN---QNGVWNIFGGRL-----------NWDDRAVV---------------------AD--DPHFQGR-----G 393 (658)
Q Consensus 356 Ht~~~~~~---~~g~~~~~~g~~-----------~w~~~~~~---------------------~~--~~~f~~~-----~ 393 (658)
|||..|+- ..+ +.+|.+.+ -|.+.+.. .. ...|... .
T Consensus 154 HTs~ghdF~lAr~~-~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~ 232 (688)
T TIGR02455 154 HTGKGADFRLAELA-HGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTD 232 (688)
T ss_pred CCCCCcchHHHhhc-CCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCC
Confidence 99999982 122 45555533 33332211 11 0122111 1
Q ss_pred CCCC----------------CCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHhhcCccEEEEcccCCC------------
Q 006158 394 NKSS----------------GDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRGF------------ 442 (658)
Q Consensus 394 ~~~~----------------~~~~~~lpdln~~n~~--vr~~i~-~~l~~w~~~~GIDGfRlD~a~~~------------ 442 (658)
|..+ ..++..+|+||+.||. ||+.|+ +++++|. +.|+||||+|++..+
T Consensus 233 Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~ 311 (688)
T TIGR02455 233 WSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWS 311 (688)
T ss_pred ceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCC
Confidence 1111 1245899999999999 999999 8999999 899999999996432
Q ss_pred -chHHH---HHHHH--HhCCC-EEEEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhh
Q 006158 443 -WGGYV---KDYLE--ATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE 515 (658)
Q Consensus 443 -~~~~~---~~~~~--~~~p~-~lvGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~ 515 (658)
...++ ++++. .-++. ++++|.--. .+.++.|+.+ +.+..|||.+...+..++..++
T Consensus 312 e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g~--~~dl~~dF~t~p~~~~AL~tgd 374 (688)
T TIGR02455 312 EGHPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSHG--GADLSYDFITRPAYHHALLTGD 374 (688)
T ss_pred ccCHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhCC--CcceeecccccHHHHHHHHcCC
Confidence 12343 33444 22565 899985322 4567888873 7889999999999988888777
Q ss_pred hhhhhhhhCCCCCCcccCCCcceeecccCCcCC--------------------------------------c--------
Q 006158 516 YWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGS--------------------------------------T-------- 549 (658)
Q Consensus 516 ~~~l~~~~~~~~~~~~~~p~~~vnfl~nHDt~R--------------------------------------~-------- 549 (658)
..-++..+...... +.-+.+.++|+.|||.-. +
T Consensus 375 a~pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~ 453 (688)
T TIGR02455 375 TEFLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYN 453 (688)
T ss_pred HHHHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCcccc
Confidence 65444443322111 112347789999999811 0
Q ss_pred ---c----------------------CCCCCChhHHHHHHHHHHh----CCCeeEEEcC--------------chhH---
Q 006158 550 ---Q----------------------GHWRFPGGREMQGYAYILT----HPGTPSVFYD--------------HIFS--- 583 (658)
Q Consensus 550 ---~----------------------~~~~~~~~~~~lA~alllt----lpGiP~IYyG--------------dE~~--- 583 (658)
. .+...+.++++++.+++++ +||+|+|||| +|++
T Consensus 454 m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD 533 (688)
T TIGR02455 454 LKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGD 533 (688)
T ss_pred ceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCc
Confidence 0 0111245678999999999 9999999999 6653
Q ss_pred --H-----------------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeecC-CEEEE
Q 006158 584 --H-----------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAA 619 (658)
Q Consensus 584 --W-----------------------------------------l~~~~~~Li~lRk~~pal~~G~~~~l~~~~-~v~a~ 619 (658)
| +...+++|+++|++++++..|.+..+.+.+ .++++
T Consensus 534 ~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~ 613 (688)
T TIGR02455 534 TRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVM 613 (688)
T ss_pred cccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEE
Confidence 2 899999999999999999999999888766 78887
Q ss_pred EE----CCEEEEEEeCCCCCCC--------------------------CCCCCeEEEEcCCCeEEEE
Q 006158 620 II----DEKVAMKLGPGHYEPP--------------------------SGSQNWSFVTEGRDYKVWE 656 (658)
Q Consensus 620 ~r----~~~vlvvvnn~~~~~~--------------------------~~~~~~~~~~~g~~~~vw~ 656 (658)
.+ ++..+++++|.+..+. .+...+++.+++++|..++
T Consensus 614 v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 614 VHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 65 2256666666655331 1234689999999998765
No 31
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-39 Score=359.59 Aligned_cols=350 Identities=26% Similarity=0.366 Sum_probs=230.7
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
-||++||++|||||++||||+|||+||+++. .+|||++.||+.|+|+|||++||++||+++|++||+||+|+|+||++.
T Consensus 36 ~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~ 115 (545)
T KOG0471|consen 36 VGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSD 115 (545)
T ss_pred ccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCc
Confidence 4899999999999999999999999999999 669999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcc-c--CCCCCCCCCCccc---------CCCCCCC--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006158 360 HYQNQNGVWN-I--FGGRLNWDDRAVV---------ADDPHFQ--------GRGNKSSGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 360 ~~~~~~g~~~-~--~~g~~~w~~~~~~---------~~~~~f~--------~~~~~~~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
.|+|+..... . |...+.|++.... .....|. ....++.+.....+||||++||+|++.|.
T Consensus 116 ~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~ 195 (545)
T KOG0471|consen 116 EVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIK 195 (545)
T ss_pred cccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHH
Confidence 9887433211 1 1111223222110 0011121 12333444455889999999999999999
Q ss_pred HHHH-HHHhhcCccEEEEcccCCCchHHHHHHHHHhCCCEEEEcccCCCCccc-ccCCCcchhh--HHHHHHHHHhcCCC
Q 006158 420 EWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAH--RQRIIDWINAASGT 495 (658)
Q Consensus 420 ~~l~-~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~~p~~lvGE~w~~~~~~~-g~m~y~~~~~--~~~i~~~~~~~~~~ 495 (658)
++++ +|. ++|+||||+|+++++...++. ..-...|.+-.||.|.+..+.. ...+|..+.. ...+..+.......
T Consensus 196 ~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 273 (545)
T KOG0471|consen 196 EWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYNDYGEDQPEIHDLIRAERFLLDDY 273 (545)
T ss_pred HHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcccccccccchhhhhHHHHHHhhhhhh
Confidence 9999 676 999999999999999887765 3444456688999888754322 2233333211 11111111111111
Q ss_pred ccccCchhhHHHHHHhhhh--hhhhhhhhhCCC-------------------CC--------CcccCC---Ccceeeccc
Q 006158 496 AGAFDVTTKGILHSALDRC--EYWRLSDEKGKP-------------------PG--------VVGWWP---SRAVTFIEN 543 (658)
Q Consensus 496 ~~~fdf~~~~~i~~~~~~~--~~~~l~~~~~~~-------------------~~--------~~~~~p---~~~vnfl~n 543 (658)
...+.+.-...+....... ...++...-... +. .+...+ ..+...++|
T Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~a~W~~~~ 353 (545)
T KOG0471|consen 274 SAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDTENRWAHWVLGN 353 (545)
T ss_pred hhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCccCCceeeeecC
Confidence 2222222111111110000 000000000000 00 000011 123456788
Q ss_pred CCcCCccCCCCCChhHHHHHHHHHHhCCCeeEEEcCchhH------------------------H---------------
Q 006158 544 HDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS------------------------H--------------- 584 (658)
Q Consensus 544 HDt~R~~~~~~~~~~~~~lA~allltlpGiP~IYyGdE~~------------------------W--------------- 584 (658)
||..|..+.++ ....++..++++|+||+|++|||+|++ |
T Consensus 354 ~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~~~gfs~~~~~~ 431 (545)
T KOG0471|consen 354 HDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDESTNAGFSEASKTW 431 (545)
T ss_pred ccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCccccccccccCCCCccCcc
Confidence 88888877765 344777788999999999999999842 2
Q ss_pred ---------------------HHHHHHHHHHHHHhCccccCCCeeEEeecCCEEEEEE---C-CEEEEEEeCCCC
Q 006158 585 ---------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---D-EKVAMKLGPGHY 634 (658)
Q Consensus 585 ---------------------l~~~~~~Li~lRk~~pal~~G~~~~l~~~~~v~a~~r---~-~~vlvvvnn~~~ 634 (658)
+...++++..+|+....+..|.......+.+++++.| + ...++++|.++.
T Consensus 432 ~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~~~r~~~~~~~~~~~~~~~~~ 506 (545)
T KOG0471|consen 432 LPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFSFSRNWDGNERFIAVLNFGDS 506 (545)
T ss_pred eeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEEEEeccCCCceEEEEEecCCc
Confidence 8889999999999987788888888888889999987 3 344555554443
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-38 Score=353.17 Aligned_cols=317 Identities=22% Similarity=0.307 Sum_probs=206.8
Q ss_pred CCCCCcceeEeeeeeccCC----CCCCcHHHHHHh--HHHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccCC
Q 006158 260 PGTGTGFEILCQGFNWESH----KSGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLY 322 (658)
Q Consensus 260 ~~~~~~y~~~~~~F~W~~~----~~GGdl~Gi~~k--LdYLk~LGv~~I~L~Pi~~~~-----------s~~GYd~~Dy~ 322 (658)
.++.+.|++++++|+--++ ...|++.|++++ |+|||+||||+|+|+||+... .||||+|..|+
T Consensus 169 ~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fF 248 (697)
T COG1523 169 WEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFF 248 (697)
T ss_pred ccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCccccc
Confidence 4455666666666652111 124999999999 999999999999999999754 78999999999
Q ss_pred CCCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCC-CCCCCCcccCCCCCCCCCCC
Q 006158 323 NLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGN 394 (658)
Q Consensus 323 ~vDp~~Gt~-------edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~-~~w~~~~~~~~~~~f~~~~~ 394 (658)
+++++|.+. .|||.||+++|++||.||||||||||+.... .|.-..|.+- ..++++..+ .+.
T Consensus 249 Ap~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~--~g~t~~f~~id~~~Yyr~~~--------dg~ 318 (697)
T COG1523 249 APEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNE--LGPTLSFRGIDPNYYYRLDP--------DGY 318 (697)
T ss_pred CCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccC--cCcccccccCCcCceEEECC--------CCC
Confidence 999999764 3999999999999999999999999985422 2223334432 122211111 111
Q ss_pred C--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHH-----HHHHHHh--CCC----EEEE
Q 006158 395 K--SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEAT--EPY----FAVG 461 (658)
Q Consensus 395 ~--~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~-----~~~~~~~--~p~----~lvG 461 (658)
+ .+++ --.||.++|+||++|+|+|+||+++|+|||||||.+..+..+.+ ..++... .|- -+++
T Consensus 319 ~~N~TGc----GNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kliA 394 (697)
T COG1523 319 YSNGTGC----GNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKLIA 394 (697)
T ss_pred eecCCcc----CcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCceeee
Confidence 1 1222 23589999999999999999999999999999999876554432 1122222 221 3888
Q ss_pred cccCCC--CcccccCC--C----cchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccC
Q 006158 462 EYWDSL--SYTYGEMD--H----NQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWW 533 (658)
Q Consensus 462 E~w~~~--~~~~g~m~--y----~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 533 (658)
|-|+-. .|+.|... + .++.+++.++.|+.+..+. ...+...+.++. ++.. ..+..
T Consensus 395 epwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~--------~~~~a~rl~gS~--d~~~-------~~~~~ 457 (697)
T COG1523 395 EPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGL--------VGEFAKRLAGSS--DLYK-------RNGRR 457 (697)
T ss_pred cchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCcc--------HHHHHHHhhcCc--chhh-------ccCCC
Confidence 888754 34444322 1 0112344444444433221 122222222211 1111 12346
Q ss_pred CCcceeecccCCcCCccCCCCC-------------------------------------ChhH-HHHHHHHHHhCCCeeE
Q 006158 534 PSRAVTFIENHDTGSTQGHWRF-------------------------------------PGGR-EMQGYAYILTHPGTPS 575 (658)
Q Consensus 534 p~~~vnfl~nHDt~R~~~~~~~-------------------------------------~~~~-~~lA~allltlpGiP~ 575 (658)
|.+.+||+..||.-.+.....+ .+++ .+...+.+|+..|+||
T Consensus 458 p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pm 537 (697)
T COG1523 458 PSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPM 537 (697)
T ss_pred ccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcc
Confidence 8899999999999433221100 1122 2344455566789999
Q ss_pred EEcCchhH--------------------H-------HHHHHHHHHHHHHhCccccCCCe
Q 006158 576 VFYDHIFS--------------------H-------YRQEIEALLSVRKRNKIHCRSRV 607 (658)
Q Consensus 576 IYyGdE~~--------------------W-------l~~~~~~Li~lRk~~pal~~G~~ 607 (658)
+-.|||++ | ++++.+.||+||+++|+|+...+
T Consensus 538 l~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 538 LLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred cccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 99999963 4 89999999999999999987443
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=1.6e-35 Score=338.49 Aligned_cols=186 Identities=22% Similarity=0.299 Sum_probs=147.6
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
||+|.+++++|+||++|||++|||+|||++. ++|||++.||+.|||.|||.++|++||++||++||+||+|+|+||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999999999999999999999999975 78999999999999999999999999999999999999999999999
Q ss_pred CC---CCC-----CCCCcccCCCC--CCCCCCcc--------cCCC----------------------CCCCC-------
Q 006158 359 AH---YQN-----QNGVWNIFGGR--LNWDDRAV--------VADD----------------------PHFQG------- 391 (658)
Q Consensus 359 ~~---~~~-----~~g~~~~~~g~--~~w~~~~~--------~~~~----------------------~~f~~------- 391 (658)
.+ +++ .+|.-++|... .+|.+... .... .+|+.
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 87 333 24544555443 45543110 0000 01110
Q ss_pred -------------------------------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 392 -------------------------------------RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 392 -------------------------------------~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
..+|..+.+..+|+.|+.++|+|.+...+++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 0112223355789999999999999999999999966669999
Q ss_pred EEcccCCC--chHHHHHHHHHhCCC-EEEEc-ccCC
Q 006158 435 RLDFVRGF--WGGYVKDYLEATEPY-FAVGE-YWDS 466 (658)
Q Consensus 435 RlD~a~~~--~~~~~~~~~~~~~p~-~lvGE-~w~~ 466 (658)
|||.++++ |..+++.+.++..|. +++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 888999988888874 78888 5654
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-36 Score=333.87 Aligned_cols=334 Identities=19% Similarity=0.204 Sum_probs=217.5
Q ss_pred CCCcceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 006158 262 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 339 (658)
Q Consensus 262 ~~~~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~ 339 (658)
..+.|++++-.|.++ ..-|++++.+++|+|||+||||+|.||||.+.+ .+|||+++-||++..+|||+++||+||+
T Consensus 144 ~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD 221 (628)
T COG0296 144 PIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVD 221 (628)
T ss_pred CceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHH
Confidence 346899999998863 446899999999999999999999999999998 7899999999999999999999999999
Q ss_pred HHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006158 340 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 340 ~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
+||++||.||||+|+||.+.+... ...|++..-+.. ..+. .+ ...-++..-.|+..++||++|+
T Consensus 222 ~aH~~GIgViLD~V~~HF~~d~~~----L~~fdg~~~~e~-~~~~-------~~----~~~~Wg~~i~~~gr~EVR~Fll 285 (628)
T COG0296 222 AAHQAGIGVILDWVPNHFPPDGNY----LARFDGTFLYEH-EDPR-------RG----EHTDWGTAIFNYGRNEVRNFLL 285 (628)
T ss_pred HHHHcCCEEEEEecCCcCCCCcch----hhhcCCcccccc-CCcc-------cc----cCCCcccchhccCcHHHHHHHH
Confidence 999999999999999999986541 122333211100 0000 00 0011123335566999999999
Q ss_pred HHHHHHHhhcCccEEEEcccCCCch------------------------HHHHHHHHHh---CCC-EEEEcccCCCCcc-
Q 006158 420 EWLCWLRNEIGYDGWRLDFVRGFWG------------------------GYVKDYLEAT---EPY-FAVGEYWDSLSYT- 470 (658)
Q Consensus 420 ~~l~~w~~~~GIDGfRlD~a~~~~~------------------------~~~~~~~~~~---~p~-~lvGE~w~~~~~~- 470 (658)
+++.+|+++|+|||+|+||+..|.. +|++...+-+ -|. +.|+|.|.+.+..
T Consensus 286 ~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t 365 (628)
T COG0296 286 ANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVT 365 (628)
T ss_pred HHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCce
Confidence 9999999999999999999865431 1222222222 344 6899999874321
Q ss_pred ----cccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhh---hhhhhhhhhCCCCCCcccCCCcceeeccc
Q 006158 471 ----YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC---EYWRLSDEKGKPPGVVGWWPSRAVTFIEN 543 (658)
Q Consensus 471 ----~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~p~~~vnfl~n 543 (658)
.|...+...+ |+. .+++.+.-. ...+-.. -+.....+-..++..+.|+-|
T Consensus 366 ~~~~~gG~gf~yk~-------------------nmg---~m~D~~~y~~~~~~~r~~~-h~~~tf~~~y~~se~~~l~~s 422 (628)
T COG0296 366 LPVAIGGLGFGYKW-------------------NMG---WMHDTLFYFGKDPVYRKYH-HGELTFGLLYAFSENVVLPLS 422 (628)
T ss_pred eeecccccchhhhh-------------------hhh---hHhhHHHhcccCccccccc-cCCCccccccccceeEecccc
Confidence 1111111100 000 111111000 0000000 000000001234578899999
Q ss_pred CCcC--CccC---CCC----CChhHHHHHHHHHHhCCCeeEEEcCchhH------------H--------------HHHH
Q 006158 544 HDTG--STQG---HWR----FPGGREMQGYAYILTHPGTPSVFYDHIFS------------H--------------YRQE 588 (658)
Q Consensus 544 HDt~--R~~~---~~~----~~~~~~~lA~allltlpGiP~IYyGdE~~------------W--------------l~~~ 588 (658)
||+. -..+ .+. .....++.++++|++.||+|++|||+||+ | +..+
T Consensus 423 HDevvhGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~ 502 (628)
T COG0296 423 HDEVVHGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRL 502 (628)
T ss_pred ccceeecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHH
Confidence 9996 2211 121 13467789999999999999999999985 3 3444
Q ss_pred HHHHHHHHHhCccc-----cCCCeeEEeecC---CEEEEEE-----CCEEEEEEeCCCCCC
Q 006158 589 IEALLSVRKRNKIH-----CRSRVEIVKAER---DVYAAII-----DEKVAMKLGPGHYEP 636 (658)
Q Consensus 589 ~~~Li~lRk~~pal-----~~G~~~~l~~~~---~v~a~~r-----~~~vlvvvnn~~~~~ 636 (658)
.+.|.++-+..+++ +...+.++..++ ++++|.| ..+.+|++||++..+
T Consensus 503 ~~~ln~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~ 563 (628)
T COG0296 503 VRDLNALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVP 563 (628)
T ss_pred HHhhHHhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCc
Confidence 44444455555544 445677777543 5777766 356788999988776
No 35
>PLN03244 alpha-amylase; Provisional
Probab=99.97 E-value=6.3e-29 Score=277.90 Aligned_cols=291 Identities=15% Similarity=0.180 Sum_probs=179.6
Q ss_pred CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCC-CCC
Q 006158 317 MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR-GNK 395 (658)
Q Consensus 317 d~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~-~~~ 395 (658)
.+++||+++++|||++|||+||++||++||+||||+|+||++.+... | .+.|+|... .+|+.. ...
T Consensus 426 ~vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--G-L~~fDGt~~----------~Yf~~~~~g~ 492 (872)
T PLN03244 426 KVTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGSND----------CYFHTGKRGH 492 (872)
T ss_pred ccCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcccc--c-hhhcCCCcc----------ceeccCCCCc
Confidence 58999999999999999999999999999999999999999976431 1 122333110 122211 011
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCc-------------------------hHHHH--
Q 006158 396 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVK-- 448 (658)
Q Consensus 396 ~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~-------------------------~~~~~-- 448 (658)
. ..++...+|+.+++||++|+++++||+++|+|||||+|++..|- ..|++
T Consensus 493 ~---~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~la 569 (872)
T PLN03244 493 H---KHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILA 569 (872)
T ss_pred c---CCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHH
Confidence 1 11234579999999999999999999999999999999983211 01333
Q ss_pred -HHHHHhCCC-EEEEcccCCCCc-----ccccCCCcchhhHH---HHHHHHHhcCCCccccCchhhHHHHHHhhhhhhhh
Q 006158 449 -DYLEATEPY-FAVGEYWDSLSY-----TYGEMDHNQDAHRQ---RIIDWINAASGTAGAFDVTTKGILHSALDRCEYWR 518 (658)
Q Consensus 449 -~~~~~~~p~-~lvGE~w~~~~~-----~~g~m~y~~~~~~~---~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~ 518 (658)
+.+....|. ++|+|...+-+. ..|.+++...+... ....|+.... . .-+.
T Consensus 570 N~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~p-------------------d-erw~ 629 (872)
T PLN03244 570 NEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIP-------------------D-HEWS 629 (872)
T ss_pred HHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCC-------------------C-cccC
Confidence 344556788 799997654221 12222222211111 1111111100 0 0022
Q ss_pred hhhhhCCCCCCcccCCCcceeecccCCcC----CccC-CC---------CC------ChhHHHHHHHHHHhCCCee-EEE
Q 006158 519 LSDEKGKPPGVVGWWPSRAVTFIENHDTG----STQG-HW---------RF------PGGREMQGYAYILTHPGTP-SVF 577 (658)
Q Consensus 519 l~~~~~~~~~~~~~~p~~~vnfl~nHDt~----R~~~-~~---------~~------~~~~~~lA~allltlpGiP-~IY 577 (658)
+........ ....+...+++|.||||.+ +... .+ .. .....+++.++++++||.| ++|
T Consensus 630 ~~~ItfsL~-~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnF 708 (872)
T PLN03244 630 MSKIVSTLI-ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNF 708 (872)
T ss_pred HHHHhhhhh-cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceee
Confidence 221111000 0122334678999999993 2111 00 00 0112355667788899988 799
Q ss_pred cCchhH----------------------H----------HHHHHHHHHHHHHhCccccCCCeeEEe--ecCCEEEEEECC
Q 006158 578 YDHIFS----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDE 623 (658)
Q Consensus 578 yGdE~~----------------------W----------l~~~~~~Li~lRk~~pal~~G~~~~l~--~~~~v~a~~r~~ 623 (658)
+|.||+ | |.+|+|.|++|++++++|..|..-+.. .++.|+||.|.
T Consensus 709 MGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~- 787 (872)
T PLN03244 709 MGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG- 787 (872)
T ss_pred cccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-
Confidence 999863 4 788999999999999999766443333 34479999997
Q ss_pred EEEEEEeCCCCCCCCCCCCeEEEEc
Q 006158 624 KVAMKLGPGHYEPPSGSQNWSFVTE 648 (658)
Q Consensus 624 ~vlvvvnn~~~~~~~~~~~~~~~~~ 648 (658)
.+|+|+|...... -.+|++.++
T Consensus 788 ~LLfVfNF~P~~s---y~dYrIGVp 809 (872)
T PLN03244 788 PFLFIFNFHPSNS---YEGYDVGVE 809 (872)
T ss_pred CEEEEEeCCCCCC---ccCCEECCC
Confidence 4777777665433 234555555
No 36
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=278.82 Aligned_cols=166 Identities=28% Similarity=0.447 Sum_probs=129.0
Q ss_pred CCCcceeEeeeeeccCC---CCCCcHHHHHHh-HHHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCCCHH--
Q 006158 262 TGTGFEILCQGFNWESH---KSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNID-- 332 (658)
Q Consensus 262 ~~~~y~~~~~~F~W~~~---~~GGdl~Gi~~k-LdYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~Gt~e-- 332 (658)
+-..|+.++++|.=... ..|| ++|.++| |++||+||+|+|+|||||++. .+|||.|++|+++-.+|||++
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 44688999998841111 1356 9999999 999999999999999999994 479999999999999999999
Q ss_pred ----HHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 333 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNID 408 (658)
Q Consensus 333 ----dlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln 408 (658)
|||.||++||..||-|+||+|+||++.+.. ..++.|+|. + +..+|+... .......+..-||
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGi-d--------~~~Yf~~~~--r~~h~~~~~r~fn 373 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGI-D--------NSVYFHSGP--RGYHNSWCSRLFN 373 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCc-C--------CceEEEeCC--ccccccccccccc
Confidence 999999999999999999999999998332 223334442 0 011222111 0111123345689
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC
Q 006158 409 HSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 409 ~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
+++++|+++|++.++||+.+|+|||||||.+..|
T Consensus 374 ~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 374 YNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred CCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 9999999999999999999999999999998543
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.97 E-value=3.6e-28 Score=279.41 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
|++|++++++|+||++||||+|||+||+++. ++|||++.||+.|||.||+.++|++||++||++||+||+|+|+|||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 006158 359 AHYQ 362 (658)
Q Consensus 359 ~~~~ 362 (658)
.+++
T Consensus 96 ~~~~ 99 (879)
T PRK14511 96 VGGP 99 (879)
T ss_pred CcCc
Confidence 8763
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2e-27 Score=240.05 Aligned_cols=337 Identities=24% Similarity=0.403 Sum_probs=238.4
Q ss_pred CcceeEeeeeeccCCCCCCcHHHHHHhH-HHHHHcCCCEEEeCCCCCCC--------CCCCCCcccCCCCCCCCCCHHHH
Q 006158 264 TGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--------SPEGYMPRDLYNLSSRYGNIDEL 334 (658)
Q Consensus 264 ~~y~~~~~~F~W~~~~~GGdl~Gi~~kL-dYLk~LGv~~I~L~Pi~~~~--------s~~GYd~~Dy~~vDp~~Gt~edl 334 (658)
.+...+++.|+|+ +..|+... ..|+--|+.+|+++|+.|+. ...+|+|.. |+++.+-|.+++|
T Consensus 26 ~~R~tmVHLFEWK-------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF 97 (504)
T KOG2212|consen 26 QGRTTIVHLFEWK-------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEF 97 (504)
T ss_pred cCcceEEEEEEee-------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHH
Confidence 4667899999996 66666555 58899999999999999876 234799997 6999999999999
Q ss_pred HHHHHHHHHcCCEEEEEeccccccCCCCC-----CCCCcccCCCCCCCCCCcccCCCCCCCC------CCC--------C
Q 006158 335 KDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQG------RGN--------K 395 (658)
Q Consensus 335 k~LV~~aH~~GikVIlD~V~NHt~~~~~~-----~~g~~~~~~g~~~w~~~~~~~~~~~f~~------~~~--------~ 395 (658)
+.||++|.+.|+||++|+|+|||+..... ..|.+. +.+.-. .+.+++...+|+. .+. .
T Consensus 98 ~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~-~p~s~S--fPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~ 174 (504)
T KOG2212|consen 98 RDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYF-NPGSRS--FPGVPYSGWDFNDGKCKTGSGDIENYNDATQ 174 (504)
T ss_pred HHHHHHhhccceEEEehhhhhhhccccccCCccccccCcc-CCCCCC--CCCCCcccccCCCcccCCCccccccccchhh
Confidence 99999999999999999999999853210 111110 111000 0112222223322 111 1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHHHhC----------CC-EEEEccc
Q 006158 396 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATE----------PY-FAVGEYW 464 (658)
Q Consensus 396 ~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~~~----------p~-~lvGE~w 464 (658)
...+..-+|.|||..+..||..|++.|.+++ +.||.|||.||++|||++-+..++..++ .. |++-|+.
T Consensus 175 V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEVI 253 (504)
T KOG2212|consen 175 VRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEVI 253 (504)
T ss_pred hhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhhh
Confidence 2234567899999999999999999999999 9999999999999999998888776542 12 6676665
Q ss_pred CCCCcccccCCCcchhhHHHHH--HHHHhcCCCccccCchhhHHHHHHhhhhhhhhhhhhhCCCCCCcccCCC-cceeec
Q 006158 465 DSLSYTYGEMDHNQDAHRQRII--DWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS-RAVTFI 541 (658)
Q Consensus 465 ~~~~~~~g~m~y~~~~~~~~i~--~~~~~~~~~~~~fdf~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~p~-~~vnfl 541 (658)
+.. | ++|. +|+ ..|....|. +...|..++.+.+.+.+...++.. ++..|+ ++++|+
T Consensus 254 D~G----g----------E~v~~~dY~--g~G~~TeF~--f~~~ig~~~r~~~~~kyL~nwG~~---wGf~~s~~~L~Fv 312 (504)
T KOG2212|consen 254 DLG----G----------EPIKSSDYF--GNGRVTEFK--FGAKLGTVIRKWNKMKYLKNWGEG---WGFMPSDRALVFV 312 (504)
T ss_pred hcC----C----------ceeeccccc--CCceeeeee--chHHHHHHHhcchhHHHHHhcCCc---cCcCCCcceEEEe
Confidence 531 0 1111 122 123334444 445577787777777777766643 333444 789999
Q ss_pred ccCCcCCccCCCC------CChhHHHHHHHHHHhCC-CeeEEEcCchh----------------------------HH--
Q 006158 542 ENHDTGSTQGHWR------FPGGREMQGYAYILTHP-GTPSVFYDHIF----------------------------SH-- 584 (658)
Q Consensus 542 ~nHDt~R~~~~~~------~~~~~~~lA~allltlp-GiP~IYyGdE~----------------------------~W-- 584 (658)
+|||+.|-...-+ .+.+++++|.++||..| |+|-+..---| +|
T Consensus 313 DNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvC 392 (504)
T KOG2212|consen 313 DNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVC 392 (504)
T ss_pred ccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCceee
Confidence 9999999765411 15688999999999999 99988776332 36
Q ss_pred --HHHHHHHHHHHHHhCccccCCCee-EEeecCCEEEEEECCEEEEEEeCCCCCC
Q 006158 585 --YRQEIEALLSVRKRNKIHCRSRVE-IVKAERDVYAAIIDEKVAMKLGPGHYEP 636 (658)
Q Consensus 585 --l~~~~~~Li~lRk~~pal~~G~~~-~l~~~~~v~a~~r~~~vlvvvnn~~~~~ 636 (658)
-...|++|..+|..- +.-.+. +.....+-++|.|+++-.+++||.++.-
T Consensus 393 EHRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~ 444 (504)
T KOG2212|consen 393 EHRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDF 444 (504)
T ss_pred echHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhH
Confidence 778899999999863 222333 3334458899999999999999987654
No 39
>PLN02784 alpha-amylase
Probab=99.95 E-value=1.7e-28 Score=278.41 Aligned_cols=128 Identities=25% Similarity=0.472 Sum_probs=117.3
Q ss_pred ccceeeccceEEEEeeeEEEEEEeCCCCCceEEEEecCCCCCeEEEeeeeeCC--CCCcccCCCCC-CCCcccccccccc
Q 006158 31 GFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVVHWGVCRDD--SKNWEIPAEPY-PPETIVFKNKALR 107 (658)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lhWg~~~~~--~~~W~~p~~~~-p~~~~~~~~~a~~ 107 (658)
=|+|.|++.+.++|||+|.|+|+ .+..|+++|+|+||+|++|||||||+|.+ ++||.+||+++ ||||+++|++|||
T Consensus 77 ~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~e 155 (894)
T PLN02784 77 FFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIE 155 (894)
T ss_pred eeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEe
Confidence 37889999999999999999997 55678999999999999999999999987 46999999999 9999999999999
Q ss_pred ccccccCCCCce---EEEEecCCceeeeEEEEEcC-CccccccCCCcceecCCCCC
Q 006158 108 TLLQPKEGGKGC---SRLFTVDEEFAGFLFVLKLN-ENTWLKCMENDFYIPLTSSS 159 (658)
Q Consensus 108 t~~~~~~~~~~~---~~~~~~~~~~~~~~Fvl~~~-~~~W~k~~G~~f~v~~~~~~ 159 (658)
|||++++.++.+ ++++++++.+.||+|||+.+ +++|+|++|+||||||+...
T Consensus 156 T~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~ 211 (894)
T PLN02784 156 TPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDL 211 (894)
T ss_pred ccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEeccccc
Confidence 999998766553 37899999999999999887 89999999999999998754
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=99.93 E-value=7.9e-26 Score=217.37 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=86.3
Q ss_pred eEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 006158 268 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 343 (658)
Q Consensus 268 ~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~----s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~ 343 (658)
++++.|.|.....+|||+||+++|+||++||||+|||+||+++. ++|||++.||+++||+|||++||++||++||+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHH
Confidence 56677777666678999999999999999999999999999998 78999999999999999999999999999999
Q ss_pred cCCEEEEEeccccccC
Q 006158 344 VGMKILGDVVLNHRCA 359 (658)
Q Consensus 344 ~GikVIlD~V~NHt~~ 359 (658)
+||+||+|+|+|||+.
T Consensus 82 ~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 RGIKVILDVVINHTSD 97 (166)
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999999994
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.82 E-value=1.3e-19 Score=220.62 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=77.0
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
+++|.+++++||||++||||+|||+|||++. ++|||++.||+.|||.|||.++|++||++||++||+||||+|+|||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 7899999999999999999999999999974 88999999999999999999999999999999999999999999999
Q ss_pred CC
Q 006158 359 AH 360 (658)
Q Consensus 359 ~~ 360 (658)
.+
T Consensus 834 ~~ 835 (1693)
T PRK14507 834 VG 835 (1693)
T ss_pred CC
Confidence 53
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=7.2e-18 Score=186.09 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=76.4
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
+|......||||++|||+++|++|||.+. |.||||++|+..|||.+|+.+.|.+||.++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 59999999999999999999999999987 8999999999999999999999999999999999999999999999988
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.73 E-value=1.3e-15 Score=180.52 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=76.9
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEEecc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVL 354 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~G----t~edlk~LV~~aH~~-GikVIlD~V~ 354 (658)
=|.|..+.++|+||++||+|+|||+||++.. ++|.|++.||+.|||.|| +.+||++||+++|++ ||++|+|+|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3889999999999999999999999999554 999999999999999994 899999999999997 9999999999
Q ss_pred ccccCCCC
Q 006158 355 NHRCAHYQ 362 (658)
Q Consensus 355 NHt~~~~~ 362 (658)
|||+.+|+
T Consensus 208 NHTa~ds~ 215 (1464)
T TIGR01531 208 NHTANNSP 215 (1464)
T ss_pred cccccCCH
Confidence 99999954
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.00 E-value=1.2e-08 Score=112.16 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=97.1
Q ss_pred CCcHHHHHHhHHHHHH---------------cCCCEEEeCCCCCCC----------------------------------
Q 006158 281 GRWYMELKEKATELSS---------------LGFSVIWLPPPTESV---------------------------------- 311 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~---------------LGv~~I~L~Pi~~~~---------------------------------- 311 (658)
+|+|.|+++-...|.+ .|+++|+|+||=+..
T Consensus 192 ~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~~ 271 (811)
T PF14872_consen 192 EGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHEDG 271 (811)
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccCc
Confidence 6999999887766643 699999999985421
Q ss_pred -----------CCCCCCcc--cCCCCCCC-CCC--HHHHHHHHHHHHH---cCCEEEEEeccccccCCCCC-CCCCcccC
Q 006158 312 -----------SPEGYMPR--DLYNLSSR-YGN--IDELKDVVNKFHD---VGMKILGDVVLNHRCAHYQN-QNGVWNIF 371 (658)
Q Consensus 312 -----------s~~GYd~~--Dy~~vDp~-~Gt--~edlk~LV~~aH~---~GikVIlD~V~NHt~~~~~~-~~g~~~~~ 371 (658)
.|||||+. -.-+.+|. ++| ++||-.||..+|. ..|+||+|+|+.|.-..... -++.| +
T Consensus 272 ~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~~f--l 349 (811)
T PF14872_consen 272 DVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLNRRF--L 349 (811)
T ss_pred eEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhhhhh--c
Confidence 46888863 33556664 343 7899999999998 67999999999998654321 11111 1
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC
Q 006158 372 GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 372 ~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
.| ..-| .-|||+.+|.||.-+++.-+.=+ ++|+||+|+|.+..|
T Consensus 350 kG------------------PnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 350 KG------------------PNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred cC------------------Cccc--------cccccccChHHHHHHHHHHHhhc-ccCCceeEecccccc
Confidence 11 1101 23799999999999999887777 899999999999643
No 45
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.78 E-value=1.2e-08 Score=110.30 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCH------HHHHHHHHHHH-HcCCEEEEEe
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDV 352 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~------edlk~LV~~aH-~~GikVIlD~ 352 (658)
=|.+....++|..++++|+|.|+++|+.+-. |+.-|.+.|...+||.|... ++++++|.+++ +.||..|.|+
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 3889999999999999999999999999987 78899999999999988653 69999999995 7999999999
Q ss_pred ccccccCCCCC
Q 006158 353 VLNHRCAHYQN 363 (658)
Q Consensus 353 V~NHt~~~~~~ 363 (658)
|+|||+.+++|
T Consensus 98 V~NHtA~nS~W 108 (423)
T PF14701_consen 98 VLNHTANNSPW 108 (423)
T ss_pred eeccCcCCChH
Confidence 99999999875
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.61 E-value=8.7e-07 Score=98.74 Aligned_cols=183 Identities=22% Similarity=0.337 Sum_probs=109.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHh---------hcCccEEEEcccCCCchHHHHH---HHHHh----------CCCEE
Q 006158 402 HAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKD---YLEAT----------EPYFA 459 (658)
Q Consensus 402 ~~lpdln~~n~~vr~~i~~~l~~w~~---------~~GIDGfRlD~a~~~~~~~~~~---~~~~~----------~p~~l 459 (658)
--.-|+|-+||.|+.+.++|+-|++. +..+||+|+||+..+..+.++. +.+++ +..+.
T Consensus 141 LLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~HlS 220 (809)
T PF02324_consen 141 LLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKHLS 220 (809)
T ss_dssp -SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC--
T ss_pred EEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhhhe
Confidence 33457889999999999999999995 6789999999999999887653 33332 34577
Q ss_pred EEcccCCCCcccccCCCcchhhHHHHHHHHHhcCCCccccCchhhHHHHHHhhhhh-----hhhhhhhhC--CCCCCccc
Q 006158 460 VGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE-----YWRLSDEKG--KPPGVVGW 532 (658)
Q Consensus 460 vGE~w~~~~~~~g~m~y~~~~~~~~i~~~~~~~~~~~~~fdf~~~~~i~~~~~~~~-----~~~l~~~~~--~~~~~~~~ 532 (658)
|=|.|.... ..|+...++..-.+|..++..+...+.... +..+....- +.......
T Consensus 221 ilE~ws~nd-----------------~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en 283 (809)
T PF02324_consen 221 ILEAWSSND-----------------PDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTEN 283 (809)
T ss_dssp EESSSTTTH-----------------HHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--SS
T ss_pred eeeccccCC-----------------hHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcCC
Confidence 889998631 134455555566777777766666654331 222221100 00000001
Q ss_pred CCCcceeecccCCcCC-----------cc---CCCCC-----------------------ChhHHHHHHHHHHhC-CCee
Q 006158 533 WPSRAVTFIENHDTGS-----------TQ---GHWRF-----------------------PGGREMQGYAYILTH-PGTP 574 (658)
Q Consensus 533 ~p~~~vnfl~nHDt~R-----------~~---~~~~~-----------------------~~~~~~lA~allltl-pGiP 574 (658)
-+.....|+.+||..- +. .-+.+ ..-.+..++|+|||- ..+|
T Consensus 284 ~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTVP 363 (809)
T PF02324_consen 284 EAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTVP 363 (809)
T ss_dssp ESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSEE
T ss_pred cccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCCc
Confidence 1123467999999951 00 00001 112357899999995 5999
Q ss_pred EEEcCchhH----H------HHHHHHHHHHHHHhCcc
Q 006158 575 SVFYDHIFS----H------YRQEIEALLSVRKRNKI 601 (658)
Q Consensus 575 ~IYyGdE~~----W------l~~~~~~Li~lRk~~pa 601 (658)
.|||||-|- . .++.|..|++-|.++-+
T Consensus 364 RVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva 400 (809)
T PF02324_consen 364 RVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA 400 (809)
T ss_dssp EEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--
T ss_pred eEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc
Confidence 999999762 1 89999999999999854
No 47
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=6.2e-06 Score=93.87 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=73.6
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEEec
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHD-VGMKILGDVV 353 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~G------t~edlk~LV~~aH~-~GikVIlD~V 353 (658)
|.|.....+|.-.++-|+|.|.++||.+-. |+.-|...|-..+++.|. +.+|.++||+.+|+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 668889999999999999999999999987 888899999999999987 78999999999997 5999999999
Q ss_pred cccccCC
Q 006158 354 LNHRCAH 360 (658)
Q Consensus 354 ~NHt~~~ 360 (658)
+|||+..
T Consensus 219 ~NHtAnn 225 (1521)
T KOG3625|consen 219 YNHTANN 225 (1521)
T ss_pred hhccccC
Confidence 9999987
No 48
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.24 E-value=6.3e-06 Score=87.52 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=81.8
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~G--t~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
+-+.+.+.|+.|+++|+|+|++.=-.... ....+.|...+......+ +-+=|+.+|++||++||+|.-=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 46789999999999999999974332211 111122211111111111 24569999999999999998766443322
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEc
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSG-DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 437 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~-~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD 437 (658)
.... .. ....+.|.... ..++.... .......-||..+|+||++|+++++..++.|.|||+.||
T Consensus 97 ~~~~---~~---~~~~p~~~~~~---------~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 97 PDVS---HI---LKKHPEWFAVN---------HPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred Cchh---hh---hhcCchhheec---------CCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 2100 00 00001121000 00000000 001223358999999999999999999999999999999
Q ss_pred c
Q 006158 438 F 438 (658)
Q Consensus 438 ~ 438 (658)
-
T Consensus 162 d 162 (311)
T PF02638_consen 162 D 162 (311)
T ss_pred c
Confidence 3
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.98 E-value=7.9e-05 Score=68.96 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=78.4
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCC--CCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc--cc-cCCCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN--HR-CAHYQ 362 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~G--Yd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N--Ht-~~~~~ 362 (658)
.+-+++||++|+|+|-+.- .+-|| |-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ .. ...|
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H- 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH- 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC-
Confidence 4567899999999998742 21233 55666677899998 7889999999999999998766554 11 1112
Q ss_pred CCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 363 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 363 ~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
++|.-...... +... ......++. ...+ |...+++++..++..++.|.+||+=+|.
T Consensus 77 ------------PeW~~~~~~G~-~~~~---~~~~~~~~~-~~c~---ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 ------------PEWFVRDADGR-PMRG---ERFGYPGWY-TCCL---NSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ------------CceeeECCCCC-CcCC---CCcCCCCce-ecCC---CccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 33432111100 0000 000001111 1222 3356699999999999889999998874
No 50
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.84 E-value=2.8e-05 Score=87.11 Aligned_cols=76 Identities=22% Similarity=0.506 Sum_probs=57.0
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCC---------CCCCCCcccCCCCC----CCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESV---------SPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---------s~~GYd~~Dy~~vD----p~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
-.-|.+..+-+|++|||..||-|-+.+. -..||.-+|-|.+- ..||+.+||+..|+++|+.||+||-
T Consensus 586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvia 665 (809)
T PF02324_consen 586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIA 665 (809)
T ss_dssp HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhh
Confidence 5679999999999999999999999876 24799999998885 6899999999999999999999999
Q ss_pred EeccccccC
Q 006158 351 DVVLNHRCA 359 (658)
Q Consensus 351 D~V~NHt~~ 359 (658)
|+|++.+..
T Consensus 666 DwVpdQiYn 674 (809)
T PF02324_consen 666 DWVPDQIYN 674 (809)
T ss_dssp EE-TSEE--
T ss_pred hhchHhhhC
Confidence 999998864
No 51
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.74 E-value=9.3e-05 Score=57.92 Aligned_cols=56 Identities=54% Similarity=1.066 Sum_probs=44.6
Q ss_pred ccccCCCeeEEeecCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEEEc
Q 006158 600 KIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWEA 657 (658)
Q Consensus 600 pal~~G~~~~l~~~~~v~a~~r~~~vlvvvnn~~~~~~~~~~~~~~~~~g~~~~vw~~ 657 (658)
-..++...+++.++.++|+...+++++|-+.+.+..|. ..+|++.++|.+|+||++
T Consensus 4 gI~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P~--~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 4 GIHCRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSPS--GSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp T--TT--EEEEEEETTEEEEEETTTEEEEESS-GGS-----TTEEEEEEETTEEEEEE
T ss_pred ccCCCCceEEEEecCCcEEEEECCeEEEEECCCccccC--CCCcEEEeECCcEEEEeC
Confidence 35567789999999999999999999999999999993 457999999999999985
No 52
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.59 E-value=0.0002 Score=61.38 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCccccCCCeeEEee----cCCEEEEEE--C-CEEEEEEeCCCC
Q 006158 588 EIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII--D-EKVAMKLGPGHY 634 (658)
Q Consensus 588 ~~~~Li~lRk~~pal~~G~~~~l~~----~~~v~a~~r--~-~~vlvvvnn~~~ 634 (658)
+||+||+||+++|+|+.|.+..+.. ++.++++.| + +.++|++|.++.
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 6999999999999999998887763 456677766 4 566666666653
No 53
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.00049 Score=74.78 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=82.0
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCC--CCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYN--LSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~--vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
.+=..+.+.||.|+.||||+||..=.-... +...+.+..=.. +--.-++-+=|..+|++||+|||+|+-=+-+--+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhccc
Confidence 456789999999999999999954222111 111111111000 0001233456999999999999999865544444
Q ss_pred cCCCCCCCCCcccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 358 CAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 358 ~~~~~~~~g~~~~~~g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
+..... .... +.|.....+..- +..+.+ +....-||-.+|+||++|.+.+...++.|.|||..|
T Consensus 141 a~~~s~-------~~~~~p~~~~~~~~~~~-~~~~~~-------~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQf 205 (418)
T COG1649 141 APPTSP-------LTKRHPHWLTTKRPGWV-YVRHQG-------WGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQF 205 (418)
T ss_pred CCCCCh-------hHhhCCCCcccCCCCeE-EEecCC-------ceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceec
Confidence 432210 0000 111110000000 000000 003455888999999999999999999999999999
Q ss_pred ccc
Q 006158 437 DFV 439 (658)
Q Consensus 437 D~a 439 (658)
|--
T Consensus 206 Dd~ 208 (418)
T COG1649 206 DDY 208 (418)
T ss_pred cee
Confidence 963
No 54
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.40 E-value=0.00096 Score=52.72 Aligned_cols=54 Identities=48% Similarity=0.883 Sum_probs=46.5
Q ss_pred ccccCCCeeEEeecCCEEEEEECCEEEEEEeCC----CCCCCCCCCCeEEEEcCCCeEEEEc
Q 006158 600 KIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPG----HYEPPSGSQNWSFVTEGRDYKVWEA 657 (658)
Q Consensus 600 pal~~G~~~~l~~~~~v~a~~r~~~vlvvvnn~----~~~~~~~~~~~~~~~~g~~~~vw~~ 657 (658)
-..++.+.+++.++.++|+...+++++|-+.+. +..| .+|++.++|.+|+||++
T Consensus 4 gI~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P----~~w~~a~sG~~yaVWek 61 (61)
T smart00810 4 GIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIP----SGFHLAASGNDYAVWEK 61 (61)
T ss_pred ccCCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCC----CCCEEEEECCCEEEEeC
Confidence 345678899999999999999999999999995 4545 45999999999999985
No 55
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.07 E-value=0.074 Score=60.19 Aligned_cols=58 Identities=14% Similarity=-0.046 Sum_probs=39.4
Q ss_pred eEeeeeeccCCCCCCcHH-HHHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCC
Q 006158 268 ILCQGFNWESHKSGRWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLS 325 (658)
Q Consensus 268 ~~~~~F~W~~~~~GGdl~-Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vD 325 (658)
+.++-|.-..+..-|||- ++.+-+|.+++.|++.|+|+|+.+.. .+..|.+.+-+.+|
T Consensus 9 v~~~l~SL~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 9 ILLHITSLPGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred EEeccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 444444332222249995 99999999999999999999999855 23355554444444
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.97 E-value=0.0056 Score=64.94 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=82.9
Q ss_pred CcHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
-+-+.+.+.++.++++|| ++|+|=-=+... . .| +..|+ +|- +.++||+++|++|+|+++=+-+ +.+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 357888899999999995 577765322111 1 12 34443 564 4899999999999999998877 344
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCC-CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG-NKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~-~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
.+++.... ... ..+. +. ...+ .......+ ....-+|+.||++|+.+.+.++.++.+.|||||-+
T Consensus 96 ~~s~~~~e----~~~-~g~~---vk------~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 161 (303)
T cd06592 96 TDSENFRE----AVE-KGYL---VS------EPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKF 161 (303)
T ss_pred CCCHHHHh----hhh-CCeE---EE------CCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 33221000 000 0000 00 0000 00000001 11335789999999999999998888899999999
Q ss_pred cccCC
Q 006158 437 DFVRG 441 (658)
Q Consensus 437 D~a~~ 441 (658)
|....
T Consensus 162 D~~E~ 166 (303)
T cd06592 162 DAGEA 166 (303)
T ss_pred CCCCc
Confidence 99753
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.84 E-value=0.0074 Score=64.15 Aligned_cols=140 Identities=15% Similarity=0.064 Sum_probs=86.5
Q ss_pred CcHHHHHHhHHHHHHcC--CCEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LG--v~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.+-+.+.+.++.+++.| +++|+|=.=+.. +|.-.| +..|+ +|- +.++||+++|++||+|++-+.+ +.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FP---d~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFP---DPEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCC---CHHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46778889999999999 667887654432 222123 45553 665 3689999999999999999875 555
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
.+++. +..... ..|.-... .+. .+.. ..|. ....-+|+.||++|+...+.++.+. +.|||||-+|.
T Consensus 92 ~~~~~----~~e~~~-~g~~v~~~-~g~-~~~~----~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~ 157 (308)
T cd06593 92 QKSPL----FKEAAE-KGYLVKKP-DGS-VWQW----DLWQ--PGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDF 157 (308)
T ss_pred CCchh----HHHHHH-CCeEEECC-CCC-eeee----cccC--CCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCC
Confidence 44321 000000 00100000 000 0000 0111 1234578999999999999999888 79999999998
Q ss_pred cCCCch
Q 006158 439 VRGFWG 444 (658)
Q Consensus 439 a~~~~~ 444 (658)
...++.
T Consensus 158 ~e~~p~ 163 (308)
T cd06593 158 GERIPT 163 (308)
T ss_pred CCCCCc
Confidence 765543
No 58
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.80 E-value=0.0087 Score=64.53 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=80.2
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCC-----CCCC-----------CcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGY-----------MPRDLYNLSSRYGNIDELKDVVNKFHDV 344 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s-----~~GY-----------d~~Dy~~vDp~~Gt~edlk~LV~~aH~~ 344 (658)
+.+.+.+.++.+++.|| ++|+|-+-+.... +..| +..+| ....+|- +.++||+++|++
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f-~~~~~FP---dp~~mi~~Lh~~ 97 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSF-PVEGRWP---NPKGMIDELHEQ 97 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceeccccc-CccccCC---CHHHHHHHHHHC
Confidence 57888999999999886 7788874221110 1122 11111 0011232 689999999999
Q ss_pred CCEEEEEeccccccCC-CCCCCCCcccCCCCCCCCCCcccCCCCCC--CCCCCCC--CCCCCCCCCCCCCCCHHHHHHHH
Q 006158 345 GMKILGDVVLNHRCAH-YQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKS--SGDNFHAAPNIDHSQDFVRKDIK 419 (658)
Q Consensus 345 GikVIlD~V~NHt~~~-~~~~~g~~~~~~g~~~w~~~~~~~~~~~f--~~~~~~~--~~~~~~~lpdln~~n~~vr~~i~ 419 (658)
|+||++=+.+. ...+ ++. ......|. ..... .+| ...+... .........-+|+.||++|+...
T Consensus 98 G~kv~l~v~P~-i~~~~~~~-~~~~~~~~-------~~~~~--g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~ 166 (340)
T cd06597 98 GVKVLLWQIPI-IKLRPHPH-GQADNDED-------YAVAQ--NYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWM 166 (340)
T ss_pred CCEEEEEecCc-cccccccc-cccchhHH-------HHHHC--CEEEEcCCCCccccccccCCCceeecCCCHHHHHHHH
Confidence 99999855442 2111 110 00000000 00000 001 0011100 01111223458899999999999
Q ss_pred HHHHHHHhhcCccEEEEcccCC
Q 006158 420 EWLCWLRNEIGYDGWRLDFVRG 441 (658)
Q Consensus 420 ~~l~~w~~~~GIDGfRlD~a~~ 441 (658)
+.++.+++++|||||-+|+...
T Consensus 167 ~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 167 EKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHhcCCcEEEecCCCc
Confidence 9999988789999999998754
No 59
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.52 E-value=0.031 Score=61.29 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=78.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC-CCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P-i~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
+-+.|.+.++.++++|++.+.|== -|......--..-|+ .+|+ +|- .-|+.|++.+|++||+.=|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 356677888889999999887622 111111110011222 3443 553 35999999999999999887766655554
Q ss_pred CCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccC
Q 006158 361 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 440 (658)
Q Consensus 361 ~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~ 440 (658)
+.. |..-++|--.. .+... ......--||+++|+|++++.+.+..+++++|||.+.+|...
T Consensus 133 S~l-------~~~hPdw~l~~----------~~~~~--~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~ 193 (394)
T PF02065_consen 133 SDL-------YREHPDWVLRD----------PGRPP--TLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNR 193 (394)
T ss_dssp SCH-------CCSSBGGBTCC----------TTSE---ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS
T ss_pred hHH-------HHhCccceeec----------CCCCC--cCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 431 11112332100 00000 001123358999999999999999888889999999999964
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.76 E-value=0.071 Score=56.57 Aligned_cols=133 Identities=13% Similarity=0.157 Sum_probs=82.9
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCC---CCcccCCC--CCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDLYN--LSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~G---Yd~~Dy~~--vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
|+=..+.+.|+.+++-|+|+|-+- -...+| |+...-.. +...-....|+++|++.+|++||.+|.=+|.
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~-- 83 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV-- 83 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE--
Confidence 455668888999999999999752 222333 43321111 1111111368999999999999999998875
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 357 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 357 t~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
-.+... ... .++|. +. ......|.+..+..=+|.-+++||+|++++++... ..|+|.+-|
T Consensus 84 -FkD~~l-----a~~--~pe~a----------v~-~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqf 143 (316)
T PF13200_consen 84 -FKDPVL-----AEA--HPEWA----------VK-TKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQF 143 (316)
T ss_pred -ecChHH-----hhh--ChhhE----------EE-CCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEe
Confidence 111110 000 01111 10 01111233334455688899999999999999988 899999999
Q ss_pred cccC
Q 006158 437 DFVR 440 (658)
Q Consensus 437 D~a~ 440 (658)
|-+.
T Consensus 144 DYIR 147 (316)
T PF13200_consen 144 DYIR 147 (316)
T ss_pred eeee
Confidence 9874
No 61
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.70 E-value=0.093 Score=56.06 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=76.6
Q ss_pred HHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 284 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
-+.+.+.++.+++.|| ++|+|-+=+... .+..-.+ +..|+ +|- +.++||+++|++|+||++-+.+- ++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCC
Confidence 4567888888988886 778886422111 0100011 34443 554 57899999999999999966443 3332
Q ss_pred CCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCC-CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 361 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGN-KSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 361 ~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~-~~~~~~~~-~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
++. |..... ..+. +. ...+. +..+..+. ...-+|+.||+.++...+.++..+.+.|||||-+|.
T Consensus 101 ~~~----y~e~~~-~g~~---v~------~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~ 166 (317)
T cd06599 101 HPR----YKELKE-AGAF---IK------PPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDN 166 (317)
T ss_pred CHH----HHHHHH-CCcE---EE------cCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecC
Confidence 221 000000 0000 00 00000 00111111 122478899999999999886554489999999998
Q ss_pred cC
Q 006158 439 VR 440 (658)
Q Consensus 439 a~ 440 (658)
..
T Consensus 167 ~E 168 (317)
T cd06599 167 NE 168 (317)
T ss_pred CC
Confidence 65
No 62
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=95.52 E-value=0.022 Score=60.80 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=81.9
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCC--CCCCCCc-ccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESV--SPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~--s~~GYd~-~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
+.+.+.+.++.+++.|| ++|||- ..... ...||.. .+ +..|+ +|- +.++||+++|++|+|||+-+. .+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 78899999999999776 678885 33110 1122211 11 24454 443 578999999999999999554 34
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCcccCCCCCC-CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 357 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF-QGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 357 t~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f-~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
...+... + |.. ....+ ... ...+....+..+ ....-+|+.||++|+...+.++....++|||||
T Consensus 95 v~~~~~~----~--y~~-------~~~~g-~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~ 160 (317)
T cd06594 95 LADDGPL----Y--YEE-------AKDAG-YLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGW 160 (317)
T ss_pred eecCCch----h--HHH-------HHHCC-eEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEE
Confidence 4433221 0 100 00000 000 000000000001 122457889999999999998877558999999
Q ss_pred EEcccCCC
Q 006158 435 RLDFVRGF 442 (658)
Q Consensus 435 RlD~a~~~ 442 (658)
-+|....+
T Consensus 161 w~D~~E~~ 168 (317)
T cd06594 161 MADFGEYL 168 (317)
T ss_pred EecCCCCC
Confidence 99987544
No 63
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.36 E-value=0.075 Score=60.59 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=72.9
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCC------------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLY------------NLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~------------~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
+.....+.|+.|+.+-||+|+.== |-|.-.... .+--+-=..+.+|.+|++||+.||+.|.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYD-------W~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~ 188 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYD-------WMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMA 188 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS---------SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEe-------eccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceeh
Confidence 688899999999999999999732 222222222 2222222357899999999999999997
Q ss_pred EeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhhc
Q 006158 351 DVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEI 429 (658)
Q Consensus 351 D~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdln~~n~~vr~~i~~~l~~w~~~~ 429 (658)
=.-+.-...+.. ..|.. ..|.-....... .+ ........+.. +--+|..|+.-|++|++-+...++.+
T Consensus 189 Ynmiyaa~~~~~-~~gv~------~eW~ly~d~~~~-~~---~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~ 257 (559)
T PF13199_consen 189 YNMIYAANNNYE-EDGVS------PEWGLYKDDSHS-NQ---DTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNF 257 (559)
T ss_dssp EEESSEEETT---S--SS-------GGBEEESSSBT-SB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhhccccCcc-cccCC------chhhhhhccCCC-cc---ceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHcc
Confidence 543332211110 11110 122110000000 00 00000011111 44578899999999999999999899
Q ss_pred CccEEEEcccC
Q 006158 430 GYDGWRLDFVR 440 (658)
Q Consensus 430 GIDGfRlD~a~ 440 (658)
|+|||-+|...
T Consensus 258 gFDG~hlDq~G 268 (559)
T PF13199_consen 258 GFDGWHLDQLG 268 (559)
T ss_dssp T--EEEEE-S-
T ss_pred CCceEeeeccC
Confidence 99999999864
No 64
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=95.35 E-value=0.077 Score=56.70 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=78.5
Q ss_pred CcHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.+-+.+.+.++.+++.|| ++|||-.=+ ..+|. .+..|+ +|- +.++||+++|++|+||++=+.+- .+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-cc
Confidence 357788888888888775 667775321 11222 123343 443 56899999999999999966443 33
Q ss_pred CCCCCCCCCcccCC-CC-CCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhhcCccEEE
Q 006158 359 AHYQNQNGVWNIFG-GR-LNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 435 (658)
Q Consensus 359 ~~~~~~~g~~~~~~-g~-~~w~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfR 435 (658)
.+.. +..|. +. ..+. +. ...+....+..+++ ..-+|+.||++++...+.++..+.+.|||||-
T Consensus 90 ~~~~-----~~~~~~~~~~~~~---v~------~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w 155 (317)
T cd06600 90 VDQN-----YSPFLSGMDKGKF---CE------IESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIW 155 (317)
T ss_pred CCCC-----ChHHHHHHHCCEE---EE------CCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEE
Confidence 2211 01110 00 0000 00 00010000111111 22478999999999999998887789999999
Q ss_pred EcccC
Q 006158 436 LDFVR 440 (658)
Q Consensus 436 lD~a~ 440 (658)
+|...
T Consensus 156 ~D~~E 160 (317)
T cd06600 156 LDMNE 160 (317)
T ss_pred eeCCC
Confidence 99865
No 65
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.15 E-value=0.24 Score=57.78 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCC----CCcccCCCC-CCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEG----YMPRDLYNL-SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~G----Yd~~Dy~~v-Dp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
-+.+...||.|+++|+|+|||.-+.+..++-- |-|.++.-+ ++.|. -+.-.+ +|++|++|..=+-+=-.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~~aw~l--~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---RVAWQL--RTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---HHHHHH--HHhhCCEEEEeccceeec
Confidence 57788889999999999999998776654322 333333322 12222 122222 999999997554332111
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
-... .... ..+.... ..... ...+ -..|+-.+|+||+.|.++..-+.+.+.|||+-||-
T Consensus 408 ~~~~--~~~~------~~~~~~~---------~~~~~--~~~~--~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 408 LDPT--LPRV------KRLDTGE---------GKAQI--HPEQ--YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred cCCC--cchh------hhccccC---------Ccccc--CCCC--CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 0000 0000 0000000 00000 0000 12288899999999999999999888999999964
No 66
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.01 E-value=0.046 Score=46.81 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=40.1
Q ss_pred CCeEEEeeeeeCCCCCcccCCCCCCCCccccccccccccccccCCCCceEEEEecCCceeeeEEEEEcCCccccccCCCc
Q 006158 71 GDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMEND 150 (658)
Q Consensus 71 ~~~~lhWg~~~~~~~~W~~p~~~~p~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~G~~ 150 (658)
..+.||+|- ..|..++.- ..- +.+.+ ...+..++.|+++..-..|.||+.+.++.|-||+|.|
T Consensus 19 ~~v~~~~G~-----n~W~~~~~~-----~m~---~~~~~----~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDNN~g~n 81 (87)
T PF03423_consen 19 PNVHLHGGF-----NRWTHVPGF-----GMT---KMCVP----DEGGWWKATVDVPEDAYVMDFVFNDGAGNWDNNNGAN 81 (87)
T ss_dssp -EEEEEETT-----S-B-SSS-E-----E-E---EESS-------TTEEEEEEE--TTTSEEEEEEE-SSS-EESTTTS-
T ss_pred CcEEEEecC-----CCCCcCCCC-----Ccc---eeeee----ecCCEEEEEEEEcCCceEEEEEEcCCCCcEeCCCCcc
Confidence 356779885 478766542 111 11110 1145578888887777789999988889999999999
Q ss_pred ceecC
Q 006158 151 FYIPL 155 (658)
Q Consensus 151 f~v~~ 155 (658)
|++++
T Consensus 82 Y~~~V 86 (87)
T PF03423_consen 82 YHFPV 86 (87)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99874
No 67
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=94.85 E-value=0.11 Score=56.18 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=77.5
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-+.+.+.++.+++.|| ++|||-+-+.. +|. + +..|+ +|- +.++|++++|++|+||++=+.+ |...
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYR--V-FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCC--c-eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 46778888899998886 67887643322 222 1 34454 554 4689999999999999976544 2221
Q ss_pred CCCCCCCCcccCCCCCCCCCCcccCCCCCC--CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 360 HYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 360 ~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f--~~~~~~~~~~~~~-~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
+.. +..|.. .... .+| ...+....+..+. ...-+|+.||+.++...+.++.+. +.|||||-+
T Consensus 91 ~~~-----~~~~~e-------~~~~--g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~ 155 (339)
T cd06604 91 DPG-----YDVYEE-------GLEN--DYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWN 155 (339)
T ss_pred CCC-----ChHHHH-------HHHC--CeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEee
Confidence 110 111100 0000 000 0001000001111 122368899999999999888887 899999999
Q ss_pred cccC
Q 006158 437 DFVR 440 (658)
Q Consensus 437 D~a~ 440 (658)
|...
T Consensus 156 D~~E 159 (339)
T cd06604 156 DMNE 159 (339)
T ss_pred cCCC
Confidence 9864
No 68
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=94.74 E-value=0.29 Score=52.77 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=76.7
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHH--HHHHHHHHHcCCEEEEEeccccc
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDEL--KDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edl--k~LV~~aH~~GikVIlD~V~NHt 357 (658)
+-+.+.+.++.+++.|| ++|||-.=+.. +|. + +..|+ +|- +. ++||+++|++|+||++=+.+. .
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P~-v 90 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFP---GLKMPEFVDELHANGQHYVPILDPA-I 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCC---CccHHHHHHHHHHCCCEEEEEEeCc-c
Confidence 46778888888888775 66887432211 111 1 23332 332 34 999999999999999976443 3
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCcccCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 358 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 358 ~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f--~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
..+.. ...+..|.. .... .+| ...+....+..+ ....-+|+.||++++...+.++.++.++|||||
T Consensus 91 ~~~~~--~~~~~~~~e-------~~~~--g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~ 159 (339)
T cd06602 91 SANEP--TGSYPPYDR-------GLEM--DVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGL 159 (339)
T ss_pred ccCcC--CCCCHHHHH-------HHHC--CeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEE
Confidence 32210 011111110 0000 000 001110000001 112336889999999999999888767999999
Q ss_pred EEcccCC
Q 006158 435 RLDFVRG 441 (658)
Q Consensus 435 RlD~a~~ 441 (658)
-+|....
T Consensus 160 w~D~~Ep 166 (339)
T cd06602 160 WIDMNEP 166 (339)
T ss_pred EecCCCC
Confidence 9998653
No 69
>PLN02635 disproportionating enzyme
Probab=94.67 E-value=0.71 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEecc
Q 006158 332 DELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~ 354 (658)
+.++++-+.||++||+||.|+.+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi 246 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPI 246 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeec
Confidence 36889999999999999999986
No 70
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=94.67 E-value=0.061 Score=57.54 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=75.9
Q ss_pred CcHHHHHHhHHHHHHc--CCCEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~L--Gv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.+-+.+.+.++.+++. -+++|+|=--+ ....|+ . -+..|+ +|- +.++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 3677788888888876 55777774211 011221 1 234443 454 467999999999999999554 3344
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEc
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 437 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD 437 (658)
.++.. |..... ..+. +. ...+.... ..+ ....-+|+.||+.++...+.++..+.++|||||-+|
T Consensus 92 ~~~~~----y~e~~~-~g~~---v~------~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 156 (319)
T cd06591 92 PETEN----YKEMDE-KGYL---IK------TDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLD 156 (319)
T ss_pred CCChh----HHHHHH-CCEE---EE------cCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEec
Confidence 33221 000000 0000 00 00000000 011 113458889999999887776543348999999999
Q ss_pred ccCC
Q 006158 438 FVRG 441 (658)
Q Consensus 438 ~a~~ 441 (658)
....
T Consensus 157 ~~Ep 160 (319)
T cd06591 157 AAEP 160 (319)
T ss_pred CCCC
Confidence 9753
No 71
>PRK10426 alpha-glucosidase; Provisional
Probab=93.56 E-value=0.34 Score=56.69 Aligned_cols=134 Identities=17% Similarity=0.241 Sum_probs=75.4
Q ss_pred HHHHHHhHHHHHHcC--CCEEEeCCCCCCC--CCCCCCc-ccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 284 YMELKEKATELSSLG--FSVIWLPPPTESV--SPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 284 l~Gi~~kLdYLk~LG--v~~I~L~Pi~~~~--s~~GYd~-~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
-+.+.+.++.+++.| +++|||- -+... .++|... -| +..|+ +| .+.++||+++|++|+|||+=+-+- .
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~F---Pdp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERY---PQLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhC---CCHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 456888888899888 5889985 21110 0111111 01 13332 23 258899999999999999987653 2
Q ss_pred cCCCCC-----CCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCcc
Q 006158 358 CAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 432 (658)
Q Consensus 358 ~~~~~~-----~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GID 432 (658)
..+++. .+|.+..- ..+.. +.. ..|.+. ..-+|+.||++|+...+.++..+.+.|||
T Consensus 294 ~~~~~~y~e~~~~gy~vk~-----------~~g~~-~~~----~~~~~~--~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvd 355 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKD-----------ADGGD-YLV----EFGEFY--AGVVDLTNPEAYEWFKEVIKKNMIGLGCS 355 (635)
T ss_pred CCCCHHHHHHHHCCcEEEC-----------CCCCE-EEe----EecCCC--ceeecCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 222210 01110000 00000 000 011111 22478899999999999886544489999
Q ss_pred EEEEcccCC
Q 006158 433 GWRLDFVRG 441 (658)
Q Consensus 433 GfRlD~a~~ 441 (658)
||-.|....
T Consensus 356 g~w~D~~E~ 364 (635)
T PRK10426 356 GWMADFGEY 364 (635)
T ss_pred EEeeeCCCC
Confidence 999998653
No 72
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.45 E-value=0.17 Score=52.26 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred cceeEeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHH
Q 006158 265 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342 (658)
Q Consensus 265 ~y~~~~~~F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH 342 (658)
|..+..++|+.. ...+. -+.+-++.|+++|+|+|=|.-..... ...+| .+++ ...+.|+++|++|+
T Consensus 5 G~~v~~~G~n~~---w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 5 GKPVNWRGFNTH---WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQ 72 (281)
T ss_dssp SEBEEEEEEEET---TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHH
T ss_pred CCeEEeeeeecc---cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHH
Confidence 556777888542 01112 57777999999999999886543111 11111 1111 23578999999999
Q ss_pred HcCCEEEEEeccc
Q 006158 343 DVGMKILGDVVLN 355 (658)
Q Consensus 343 ~~GikVIlD~V~N 355 (658)
++||+||+|+--.
T Consensus 73 ~~gi~vild~h~~ 85 (281)
T PF00150_consen 73 AYGIYVILDLHNA 85 (281)
T ss_dssp HTT-EEEEEEEES
T ss_pred hCCCeEEEEeccC
Confidence 9999999998443
No 73
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.23 E-value=0.36 Score=46.59 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
-....+.+.+++++|+++|.|. ...-...-+-|+.++.-.-..+..+-|..+.++|.+.||||++-+-++.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 6778899999999999999987 1111112233444422122235677899999999999999999887763
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=92.71 E-value=0.3 Score=62.19 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCc--hHHHHHHH
Q 006158 398 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--GGYVKDYL 451 (658)
Q Consensus 398 ~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~--~~~~~~~~ 451 (658)
..+..+|.-+..++|+|-+..-..+..|+++=-|||.|||.+.++. ..+++.+.
T Consensus 1035 FFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr 1090 (1693)
T PRK14507 1035 FFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQ 1090 (1693)
T ss_pred eecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHH
Confidence 3345788888889999999999999999988889999999999864 45666653
No 75
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.26 Score=51.86 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=43.7
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
+.....++-|+-..+.|++-|..+=.......+. --.-|++|+++||+.||+||+|+-+
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~--------------~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAEL--------------YFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHHH--------------HHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 4466677788888899999998654443332221 1235999999999999999999955
No 76
>PRK10658 putative alpha-glucosidase; Provisional
Probab=92.26 E-value=0.21 Score=58.57 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=75.8
Q ss_pred HHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 284 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
=+.+.+-++.+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.+.||+++|++|+||++=+.+ +.+.+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~ 352 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQK 352 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCC
Confidence 3456666777777766 4566654321 1222123 23342 333 4678999999999999987655 23332
Q ss_pred CCC-----CCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 361 YQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 361 ~~~-----~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
++. .+|.+.. ...+....+..| ....-+|+.||++|+...+.++.++ +.|||||
T Consensus 353 s~~f~e~~~~gy~vk-------------------~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgf 412 (665)
T PRK10658 353 SPLFKEGKEKGYLLK-------------------RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCF 412 (665)
T ss_pred chHHHHHHHCCeEEE-------------------CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEE
Confidence 221 0111000 001111111111 2234578999999999999998888 7999999
Q ss_pred EEcccCCC
Q 006158 435 RLDFVRGF 442 (658)
Q Consensus 435 RlD~a~~~ 442 (658)
-.|....+
T Consensus 413 w~D~gE~~ 420 (665)
T PRK10658 413 KTDFGERI 420 (665)
T ss_pred EecCCcee
Confidence 99976543
No 77
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=92.13 E-value=0.34 Score=54.07 Aligned_cols=136 Identities=24% Similarity=0.330 Sum_probs=75.7
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-..+.+-++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- ++++|++.+|++|+||++-+.+. ...
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P~-v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHPF-VSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEESE-EET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeecc-cCC
Confidence 57778888888888776 45665443222 111 2 24444 343 78999999999999999998873 333
Q ss_pred CCCCCCCCcccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 360 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 360 ~~~~~~g~~~~~~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
+.. .+..|... .++.- . ...+....+..+ ....-+|+.||++++...+.++.+++.+|||||-+
T Consensus 110 ~~~----~~~~~~~~~~~~~~v---~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 176 (441)
T PF01055_consen 110 DSP----DYENYDEAKEKGYLV---K------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWL 176 (441)
T ss_dssp TTT----B-HHHHHHHHTT-BE---B------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEE
T ss_pred CCC----cchhhhhHhhcCcee---e------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEe
Confidence 222 01111000 00000 0 001100000001 11445788999999999999998887779999999
Q ss_pred cccCCC
Q 006158 437 DFVRGF 442 (658)
Q Consensus 437 D~a~~~ 442 (658)
|.....
T Consensus 177 D~~E~~ 182 (441)
T PF01055_consen 177 DFGEPS 182 (441)
T ss_dssp ESTTTB
T ss_pred ecCCcc
Confidence 996543
No 78
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=91.65 E-value=0.64 Score=47.82 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 330 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409 (658)
Q Consensus 330 t~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~ 409 (658)
+.+.+++.+..+|++|+||++=+--+|.+... ...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 56889999999999999999988665544211 001
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEccc
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 439 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a 439 (658)
.+++-++.+.+.+..+++.||+||+=||--
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 244556777777777777999999999974
No 79
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=91.58 E-value=0.55 Score=50.19 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=76.7
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCC-C-CCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESV-S-PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~-s-~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
+-+.+.+.++.+++.|| ++|+|-.=+-.. . ...|. | +..|+ +|- +.++||+++|++|+||++=+.+ +.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 46778888888888775 677775422110 0 00111 2 33443 554 4578999999999999998754 23
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCcccCCCCCCC--CCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCcc
Q 006158 358 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GRGNK---SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 432 (658)
Q Consensus 358 ~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~--~~~~~---~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GID 432 (658)
..+++. |.. ....+ ..+. ..+.. ..|.+ ...-+|+.||++++...+.++.+. +.|||
T Consensus 95 ~~~~~~-------y~e-------~~~~g-~l~~~~~~~~~~~~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvd 156 (317)
T cd06598 95 LKNSKN-------WGE-------AVKAG-ALLKKDQGGVPTLFDFWFG--NTGLIDWFDPAAQAWFHDNYKKLI-DQGVT 156 (317)
T ss_pred cCCchh-------HHH-------HHhCC-CEEEECCCCCEeeeeccCC--CccccCCCCHHHHHHHHHHHHHhh-hCCcc
Confidence 322221 100 00000 0000 00000 01111 123467799999999999888875 89999
Q ss_pred EEEEcccC
Q 006158 433 GWRLDFVR 440 (658)
Q Consensus 433 GfRlD~a~ 440 (658)
||-+|...
T Consensus 157 g~w~D~~E 164 (317)
T cd06598 157 GWWGDLGE 164 (317)
T ss_pred EEEecCCC
Confidence 99999864
No 80
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.24 E-value=0.7 Score=49.55 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
.+.|+.||+.|+|+|=|=- +-.+.. .-+-+.+...+|.++|++.||+|+||+=+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc------------cccCCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 5678999999999986632 111111 44456789999999999999999999954
No 81
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.12 E-value=0.57 Score=49.43 Aligned_cols=130 Identities=11% Similarity=0.106 Sum_probs=73.0
Q ss_pred CcHHHHHHhHHHHHHcCC--CEEEeCCCCCCC-C----CCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 282 RWYMELKEKATELSSLGF--SVIWLPPPTESV-S----PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~-s----~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
.+.+.+.+-++.+++.|| ++|||=.=+-.. . ..+|. -+..|+ +|- +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 357788888888887665 667763211110 0 01121 134443 553 568999999999999999887
Q ss_pred cccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccE
Q 006158 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 433 (658)
Q Consensus 354 ~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDG 433 (658)
+........ ..|..+.. .. ...... ....-+|+.||+.++...+.+...+.+.||||
T Consensus 96 P~~~~~~~~---~~y~~~~~---------~~-------~~~~~~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 96 PADGIRAHE---DQYPEMAK---------AL-------GVDPAT----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CCcccCCCc---HHHHHHHH---------hc-------CCCccc----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 643111110 00110100 00 000000 01124688999999877666554444899999
Q ss_pred EEEcccC
Q 006158 434 WRLDFVR 440 (658)
Q Consensus 434 fRlD~a~ 440 (658)
|=.|...
T Consensus 153 ~W~D~~E 159 (292)
T cd06595 153 WWLDWQQ 159 (292)
T ss_pred EEecCCC
Confidence 9999743
No 82
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=90.01 E-value=3.5 Score=44.66 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=73.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCC-------CCCCHHHHHHHHHHHHHcCCEEEEEe-ccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-------RYGNIDELKDVVNKFHDVGMKILGDV-VLN 355 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-------~~Gt~edlk~LV~~aH~~GikVIlD~-V~N 355 (658)
...|..-+|.++.+++|.++|= +.+. ..+++....|=.+-. .|=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH-ITDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG 94 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe-EEcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCch
Confidence 7788888999999999999872 0010 112222222211110 11289999999999999999999998 567
Q ss_pred cccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 006158 356 HRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 430 (658)
Q Consensus 356 Ht~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~G 430 (658)
|+..-.... +.-...+...+. ..+.-...-.||..+|++.+++.+++..+++-+.
T Consensus 95 H~~a~~~~~--------------p~l~~~~~~~~~------~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 95 HTGSWGQGY--------------PELLTGCYAVWR------KYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred hhHHHHHhC--------------hhhhCCCCcccc------ccccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 775422110 000000000000 0000011234888999999999999988875443
No 83
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=89.97 E-value=1.1 Score=52.78 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeccc
Q 006158 332 DELKDVVNKFHDVGM--KILGDVVLN 355 (658)
Q Consensus 332 edlk~LV~~aH~~Gi--kVIlD~V~N 355 (658)
+.++++.+.|+++|| +||.|+.+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 368889999999999 679999874
No 84
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.79 E-value=0.29 Score=53.03 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=40.8
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
++....+-|.-.+++|++.|+.+=...-. +.. ...+.|++|++.||+.||+||+|+-..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~-----~~~---------~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPED-----DPE---------DYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCC-----CHH---------HHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 57888888888999999999875211110 111 125789999999999999999999654
No 85
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=89.18 E-value=1.8 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~N 355 (658)
+.++++-+.|+.+||+||.|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 368888899999999999999884
No 86
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.97 E-value=0.84 Score=49.63 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEccc
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 439 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a 439 (658)
.++..|+.+++.+..+++++|.||+-||--
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 578889988888877778999999999974
No 87
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=88.93 E-value=3.1 Score=43.18 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=43.6
Q ss_pred CcHHHHHHhHHHHHHcC--CCEEEeCCCCCCCCCCCCCcccC-CCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 282 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LG--v~~I~L~Pi~~~~s~~GYd~~Dy-~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
.+-+.+.+.++.+++.| +++|+|-.-+... | .++ +..|+ +|- +.++||+++|++|+||++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 56788889999888855 5588886544332 1 111 24443 454 468899999999999999663
No 88
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=88.48 E-value=0.74 Score=52.33 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~N 355 (658)
+.++++.+.|+++||+||.|+.+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 368999999999999999999874
No 89
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=88.12 E-value=0.55 Score=54.24 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCeeEEEcCchh-----------------------------HH----------HHHHHHHHHHHHHhCcc
Q 006158 561 MQGYAYILTHPGTPSVFYDHIF-----------------------------SH----------YRQEIEALLSVRKRNKI 601 (658)
Q Consensus 561 ~lA~allltlpGiP~IYyGdE~-----------------------------~W----------l~~~~~~Li~lRk~~pa 601 (658)
..+..+-||.||||=||.|.|. +| =...+.+++++|+++|.
T Consensus 709 L~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~e 788 (889)
T COG3280 709 LAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHPE 788 (889)
T ss_pred HHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhchH
Confidence 3445566899999999999883 11 12356788999999996
Q ss_pred -ccCCCeeEEeecC----CEEEEEE---CCEEEEEEeC
Q 006158 602 -HCRSRVEIVKAER----DVYAAII---DEKVAMKLGP 631 (658)
Q Consensus 602 -l~~G~~~~l~~~~----~v~a~~r---~~~vlvvvnn 631 (658)
+..|.+..+...+ .+++|.| ++.+|+++++
T Consensus 789 lF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 789 LFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred hhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 7899999998654 5777766 3456666665
No 90
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.81 E-value=0.95 Score=49.45 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=67.0
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.-+.+-|+-+|++|||+|-|..+.-+. ....|| -+.|..+++.|+++||+|||-+.. ++.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~yd-------------F~~lD~~l~~a~~~Gi~viL~~~~-~~~--- 72 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYD-------------FSWLDRVLDLAAKHGIKVILGTPT-AAP--- 72 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB----------------HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeee-------------cHHHHHHHHHHHhccCeEEEEecc-ccc---
Confidence 346778999999999999998875321 223332 234899999999999999997752 221
Q ss_pred CCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc----CccEEEEc
Q 006158 362 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI----GYDGWRLD 437 (658)
Q Consensus 362 ~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~----GIDGfRlD 437 (658)
+.|-....+... ..+..+.. .....-...+..+|.+|+++.+.++.+.+.| .|-||-+|
T Consensus 73 -------------P~Wl~~~~Pe~~-~~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 73 -------------PAWLYDKYPEIL-PVDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp --------------HHHHCCSGCCC--B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC
T ss_pred -------------ccchhhhccccc-ccCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec
Confidence 112100000000 00001100 0111223356688999999888766555444 47899998
Q ss_pred cc
Q 006158 438 FV 439 (658)
Q Consensus 438 ~a 439 (658)
.-
T Consensus 136 NE 137 (374)
T PF02449_consen 136 NE 137 (374)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 91
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.48 E-value=7.4 Score=41.48 Aligned_cols=122 Identities=14% Similarity=0.205 Sum_probs=71.1
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC-----CCCCCHHHHHHHHHHHHHcCCEEEEEe-ccccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 357 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD-----p~~Gt~edlk~LV~~aH~~GikVIlD~-V~NHt 357 (658)
..-|.+.||.++.+++|.++|== .+.. .+++....|=.+- ..+=|.+|+++||+-|.++||.||-.+ ++.|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hl-tDd~-~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHL-TDDQ-GFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEE-ecCC-CceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 77888899999999999877620 0111 1222222221110 112378999999999999999999998 56777
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 006158 358 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 427 (658)
Q Consensus 358 ~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~ 427 (658)
..-.. .|..+. ..... +. .....+. .-+.||..+|++.+++.+++..+++
T Consensus 95 ~a~~~----~ypel~----------~~~~~-~~----~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 95 SAIAV----AYPELA----------SGPGP-YV----IERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred HHHHH----hCHHhc----------cCCCc-cc----ccccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 53211 000000 00000 00 0000001 1235899999999999999887773
No 92
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=87.30 E-value=1.1 Score=53.30 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCEEEEEeccccccCCCCC-----CCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCC
Q 006158 333 ELKDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPN 406 (658)
Q Consensus 333 dlk~LV~~aH~~GikVIlD~V~NHt~~~~~~-----~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpd 406 (658)
+.+.|++.+|++|||+|.=+.+.= ..+++. .+|-+.+ ...+....+..|. ...-
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~i-~~d~~~~~e~~~~Gy~~k-------------------~~~g~~~~~~~w~~~~a~ 381 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPYI-KQDSPLFKEAIEKGYFVK-------------------DPDGEIYQADFWPGNSAF 381 (772)
T ss_pred CHHHHHHHHHhcCceEEEEecccc-ccCCchHHHHHHCCeEEE-------------------CCCCCEeeecccCCcccc
Confidence 345999999999999998876642 222221 0111000 1112222222232 3455
Q ss_pred CCCCCHHHHHHHHH-HHHHHHhhcCccEEEEcccC
Q 006158 407 IDHSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVR 440 (658)
Q Consensus 407 ln~~n~~vr~~i~~-~l~~w~~~~GIDGfRlD~a~ 440 (658)
+|+.||++|+...+ ....++ ++|||||-.|...
T Consensus 382 ~DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nE 415 (772)
T COG1501 382 PDFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNE 415 (772)
T ss_pred cCCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCC
Confidence 78899999999995 556677 9999999999964
No 93
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=87.15 E-value=1.3 Score=53.85 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=75.3
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-+.+.+-++.+++.|| ++|||-- ....||.. |..|+ +|- +.++|++++|++|+|+|.=+.+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDi----dYm~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDI----DYMDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEeh----hhhcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 46778888888888765 6688752 12224432 45554 564 4689999999999999775433 1211
Q ss_pred CCCCCCCCcccCCCCCCCCCCcccCCCCCC--CCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 360 HYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 360 ~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f--~~~~~~~~~~~~~~-lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
+ ..|..|+.. ... ..| ...+....+..|++ ..-.||.||++|+...+.++.++ +.|||||=+
T Consensus 268 d-----~gY~~y~eg-------~~~--~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~ 332 (978)
T PLN02763 268 E-----EGYFVYDSG-------CEN--DVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWN 332 (978)
T ss_pred C-----CCCHHHHhH-------hhc--CeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEc
Confidence 1 112222110 000 000 00111111111211 11247899999999988888888 799999999
Q ss_pred ccc
Q 006158 437 DFV 439 (658)
Q Consensus 437 D~a 439 (658)
|+-
T Consensus 333 Dmn 335 (978)
T PLN02763 333 DMN 335 (978)
T ss_pred cCC
Confidence 984
No 94
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=84.95 E-value=12 Score=38.98 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=43.3
Q ss_pred CCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCC-CCC-CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 280 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGY-MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 280 ~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~-~GY-d~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
+|-+.+....-+|+-+++|+..|.+ +...+ +++ ...|+..+.+. .++++||+-|+++|++|+|=+
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence 3568999999999999999999998 33311 222 34555566554 689999999999999998743
No 95
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=84.89 E-value=12 Score=40.25 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=73.1
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD------------p~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
+.+-|.+-+|.++..++|.++|=-- +. ..++.....|=.+- ..+=|.+|+++||+-|.+|||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4778888899999999999987321 11 11222222221111 1122789999999999999999999
Q ss_pred Ee-ccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 006158 351 DV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 429 (658)
Q Consensus 351 D~-V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~ 429 (658)
.+ ++-|+..--. .+..+.. ..+.. ..+ ...-.....||..+|++.+++.+++..+++-+
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~-~~~~~-------~~~--------~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f 153 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC-DGKAK-------PLY--------TGIEVGFSSLDVDKPTTYEFVDDVFRELAALT 153 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc-CCCCC-------ccc--------cccCCCCcccCCCCHHHHHHHHHHHHHHHHhC
Confidence 98 5566653111 0000100 00000 000 00001123588999999999999988887433
No 96
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.85 E-value=8.6 Score=41.21 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=72.7
Q ss_pred cHHHHHHhHHHHHHcCCCEEEe--CC-----CCCCC--CCCC-CCc------ccCCCC--CCCCCCHHHHHHHHHHHHHc
Q 006158 283 WYMELKEKATELSSLGFSVIWL--PP-----PTESV--SPEG-YMP------RDLYNL--SSRYGNIDELKDVVNKFHDV 344 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L--~P-----i~~~~--s~~G-Yd~------~Dy~~v--Dp~~Gt~edlk~LV~~aH~~ 344 (658)
...-|.+-+|.++.+++|.++| += +-..+ ...| |.. ..+... ...+=|.+|+++||+-|.+|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 3778888899999999999997 11 10000 0000 100 001111 11222789999999999999
Q ss_pred CCEEEEEe-ccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 006158 345 GMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 423 (658)
Q Consensus 345 GikVIlD~-V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~ 423 (658)
||.||-.+ ++.|+..--.. ++. +...+. ......-.||..+|++.+++.+++.
T Consensus 95 gI~vIPEID~PGH~~a~~~~--------------~pe--------l~~~~~----~~~~~~~~l~~~~~~t~~f~~~l~~ 148 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKA--------------MPE--------LGLKNP----FSKYDKDTLDISNPEAVKFVKALFD 148 (326)
T ss_pred CCeEeccCCCcHHHHHHHHh--------------hHH--------hcCCCc----ccCCCcccccCCCHHHHHHHHHHHH
Confidence 99999988 56676532110 000 000000 0112233578899999999999998
Q ss_pred HHHhhcC
Q 006158 424 WLRNEIG 430 (658)
Q Consensus 424 ~w~~~~G 430 (658)
..++-+.
T Consensus 149 E~~~~f~ 155 (326)
T cd06564 149 EYLDGFN 155 (326)
T ss_pred HHHHhcC
Confidence 8886555
No 97
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=84.32 E-value=2.8 Score=45.12 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-..+.+.++.+++.+| ++|||=.=+. .+|. .+..|+ +|-. .++|++++|++|+|||+-+.+- ..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~- 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS- 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee-
Confidence 56777788888877665 6777764222 2221 244454 5644 4789999999999999877542 11
Q ss_pred CCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEccc
Q 006158 360 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 439 (658)
Q Consensus 360 ~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a 439 (658)
+ + ..|. +. ... .|+.||++|+.-.+..+.+. +.|||||=+|+.
T Consensus 90 -----------~-g-~~~~-------------------~~--~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 90 -----------Y-G-GGLG-------------------SP--GLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred -----------c-C-ccCC-------------------CC--cee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 0 0 0010 00 012 46789999999888777777 789999999985
Q ss_pred C
Q 006158 440 R 440 (658)
Q Consensus 440 ~ 440 (658)
.
T Consensus 133 E 133 (332)
T cd06601 133 T 133 (332)
T ss_pred C
Confidence 4
No 98
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=83.46 E-value=8.6 Score=45.48 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred CcHHHHHHhHHHHHHcCCC--EEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc-ccc
Q 006158 282 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN-HRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~--~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N-Ht~ 358 (658)
+++..+.+..+..+++||. .+|.- .....+ -+||.-=+-.|++ |+++++.+|++|+|+|+=+-++ ++.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~D----iDyMd~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is~~ 378 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVID----IDYMDG--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFISTN 378 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeee----hhhhhc--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccccC
Confidence 5799999999999999985 44421 112222 3454333345666 9999999999999987755422 111
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCC-CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHF-QGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f-~~~~~~~~~~~~~-~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
.. |.+|+. .....-.-.. .+... ..+..++ ...-.|+.||.+.....+.++.+-++.++||+=+
T Consensus 379 ~~-------y~~y~~------g~~~~v~I~~~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wi 444 (805)
T KOG1065|consen 379 SS-------YGPYDR------GVAKDVLIKNREGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWI 444 (805)
T ss_pred cc-------chhhhh------hhhhceeeecccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEE
Confidence 11 111210 0000000000 00000 1111111 2333567899888888888888888999999999
Q ss_pred ccc
Q 006158 437 DFV 439 (658)
Q Consensus 437 D~a 439 (658)
|+-
T Consensus 445 Dmn 447 (805)
T KOG1065|consen 445 DMN 447 (805)
T ss_pred ECC
Confidence 994
No 99
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=82.83 E-value=1.8 Score=46.75 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=77.3
Q ss_pred CcHHHHHHhHHHHHHcCC--CEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv--~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.+-+.+.+.++.+++.|| ++|+|-.=+. .+|. .+..|+ +|- +.+.||+++|++|+|||+-+.+-- .
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~v-~ 89 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPHI-K 89 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCce-e
Confidence 357778888888888665 6677753221 1222 245555 554 568899999999999999876532 2
Q ss_pred CCCCCCCCCcccCCCC--CCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHh--hcCccE
Q 006158 359 AHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDG 433 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~--~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdln~~n~~vr~~i~~~l~~w~~--~~GIDG 433 (658)
.+.. +..|... ..+.-. ...+....+..+ ....-+|+.||++++...+.++.... ..|+||
T Consensus 90 ~~~~-----~~~y~e~~~~g~~vk---------~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g 155 (339)
T cd06603 90 RDDG-----YYVYKEAKDKGYLVK---------NSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLY 155 (339)
T ss_pred cCCC-----CHHHHHHHHCCeEEE---------CCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCce
Confidence 1100 0111000 000000 000000000001 11234788999999999999888764 369999
Q ss_pred EEEcccC
Q 006158 434 WRLDFVR 440 (658)
Q Consensus 434 fRlD~a~ 440 (658)
|=+|...
T Consensus 156 ~w~D~~E 162 (339)
T cd06603 156 IWNDMNE 162 (339)
T ss_pred EEeccCC
Confidence 9999753
No 100
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=82.29 E-value=9.7 Score=43.22 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
+.+.++=..|+++||.||.|+.+.=.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va 235 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVA 235 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceec
Confidence 35667777788899999999988743
No 101
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.28 E-value=4.7 Score=45.18 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=53.5
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeC--------------C-CCCCCCCCCCCcccCCCCCCCCC-------------CHHHH
Q 006158 283 WYMELKEKATELSSLGFSVIWLP--------------P-PTESVSPEGYMPRDLYNLSSRYG-------------NIDEL 334 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~--------------P-i~~~~s~~GYd~~Dy~~vDp~~G-------------t~edl 334 (658)
+...|.+-+|.+...++|.++|= | +.+..++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 47888888999999999988872 1 11111333443333333333332 78999
Q ss_pred HHHHHHHHHcCCEEEEEe-ccccccC
Q 006158 335 KDVVNKFHDVGMKILGDV-VLNHRCA 359 (658)
Q Consensus 335 k~LV~~aH~~GikVIlD~-V~NHt~~ 359 (658)
++||+-|++|||.||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999998 6778764
No 102
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=82.14 E-value=4.4 Score=41.64 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 410 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~ 410 (658)
..++..++++||++|+||++=+- ++.... + . . -..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~~----------~------------------~--------------~--~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPPE----------F------------------T--------------A--ALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCCc----------c------------------h--------------h--hhc
Confidence 35789999999999999998542 111100 0 0 0 125
Q ss_pred CHHHHHHHHHHHHHHHhhcCccEEEEcccCCCc-----hHHHHHHHHHhCC
Q 006158 411 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-----GGYVKDYLEATEP 456 (658)
Q Consensus 411 n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~-----~~~~~~~~~~~~p 456 (658)
++..|+.+++.+..+++++|+||.-||--.... ..|++++.++.++
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 788899888888777789999999999743211 2455665555544
No 103
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=80.73 E-value=6.4 Score=41.91 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 330 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409 (658)
Q Consensus 330 t~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~ 409 (658)
+.+.+++-|++||++|+|||+-+ |... +. ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~~----~~---------------------------------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGAN----GH---------------------------------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCCC----Cc---------------------------------------ccc
Confidence 56789999999999999999875 2100 00 012
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcccC
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 440 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~ 440 (658)
.++.-|+.+++.+..+++++|+||+-||--.
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 4566788888888888889999999999854
No 104
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.77 E-value=20 Score=38.88 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=70.3
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCC-----------CCCC----CCCCCCCc----ccCCCCCC--CCCCHHHHHHHHHHHH
Q 006158 284 YMELKEKATELSSLGFSVIWLPP-----------PTES----VSPEGYMP----RDLYNLSS--RYGNIDELKDVVNKFH 342 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~P-----------i~~~----~s~~GYd~----~Dy~~vDp--~~Gt~edlk~LV~~aH 342 (658)
..-|.+-+|.++.+++|.++|=- -++. .+..++.. .......+ .+=|.+|+++||+-|.
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 77788889999999999998721 1111 11111111 00111111 1226899999999999
Q ss_pred HcCCEEEEEe-ccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006158 343 DVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEW 421 (658)
Q Consensus 343 ~~GikVIlD~-V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~ 421 (658)
++||.||-.+ ++.|+..--.. +..+.. ... ...+.+. .....-.||..+|++.+++.++
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~~----~pel~~----------~~~-----~~~~~~~-~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALAA----YPELGC----------TGG-----PGSVVSV-QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred HcCCEEEEecCCchhHHHHHHh----CccccC----------CCC-----CCccccc-cCcCCCccCCCChhHHHHHHHH
Confidence 9999999998 56777532110 000000 000 0000000 0111234788999999999998
Q ss_pred HHHHHh
Q 006158 422 LCWLRN 427 (658)
Q Consensus 422 l~~w~~ 427 (658)
+...++
T Consensus 157 l~E~~~ 162 (357)
T cd06563 157 LDEVAE 162 (357)
T ss_pred HHHHHH
Confidence 888874
No 105
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=78.52 E-value=4 Score=45.09 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCchHHHHHHHHH---hCCC
Q 006158 401 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY 457 (658)
Q Consensus 401 ~~~lpdln~-----~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~~~~~~~~~~---~~p~ 457 (658)
|.+..+|.| .||.++++|.+..+..+ .-++|||||.++.-|..+-..++++ ++|+
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 456777777 57999999999998886 4589999999998887665555544 4564
No 106
>PRK15452 putative protease; Provisional
Probab=78.15 E-value=12 Score=41.79 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=36.8
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCC-CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~P-i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
|++..+...+ +.|+++||+.. -|.... ...+| +.++|++.|+.||++|.+|.+
T Consensus 11 g~~e~l~aAi----~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMRYAF----AYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHHHHH----HCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 5566555444 66999999954 232221 12333 467899999999999999987
No 107
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=77.89 E-value=12 Score=40.42 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccccccCCCC
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 362 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt---~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~ 362 (658)
..++.....++=|+..|..-.+.-++...++. -.+.+-+ .+.||+|++++|+.|-+|++-+ +|.|....
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~~ 108 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQAN 108 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGSS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceeec--cccccccC
Confidence 45555555566688888765555444222211 1111222 5689999999999999999987 78886553
No 108
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=77.82 E-value=8.5 Score=41.03 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCC
Q 006158 403 AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441 (658)
Q Consensus 403 ~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~ 441 (658)
+--.+|+++++.|+.|.+-+...+ +.|+|||=+|.+..
T Consensus 134 g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 134 GNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 344688899999999998877666 79999999998764
No 109
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=77.06 E-value=45 Score=36.66 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=81.3
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 365 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~ 365 (658)
..+-.+-+|+.|...|-|+--+--. .-|-=..++|..++... ..+=+++|++||+++|||+-+ + |..
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~---Y-~S~------- 150 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL---Y-HSL------- 150 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE---E-cCH-------
Confidence 4555678899999988765432211 22222345677777555 457899999999999999988 1 222
Q ss_pred CCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHhhcCccEEEEcccCCC
Q 006158 366 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 366 g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i---~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
.+|+.. .|.... .........+...+|+ ..-++.++..||=|.+=+|.+-.-
T Consensus 151 ---------~DW~~p-------~y~~~~---------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 151 ---------FDWFNP-------LYAGPT---------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred ---------HHhCCC-------cccccc---------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 223211 000000 0000011234556677 677888888999999999986322
Q ss_pred ch-----HHHHHHHHHhCCCE---EEEccc
Q 006158 443 WG-----GYVKDYLEATEPYF---AVGEYW 464 (658)
Q Consensus 443 ~~-----~~~~~~~~~~~p~~---lvGE~w 464 (658)
+. .-+.+.+....|.. ++..-|
T Consensus 206 ~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 206 PDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred ccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 11 11233455666764 665444
No 110
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=74.56 E-value=6.5 Score=41.54 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
-..-..-+++||+||+|+|-+ |.|||..--.+ ..+++.+.||.||+|+-.-+++.+
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~----CM~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDE----CMSAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HH----HHHHHHHTT-EEEEES-BTTBS--
T ss_pred HHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHH----HHHHHHhCCCEEEEecCCCCcccc
Confidence 344555578999999999986 56666654343 444566789999999987755544
No 111
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=74.28 E-value=4.3 Score=43.80 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhcCccEEEEcccCCC
Q 006158 415 RKDIKEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 415 r~~i~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
+..+++-|...++.||+|||=||.-...
T Consensus 88 ~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 88 SFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred chHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4455555555566789999999987655
No 112
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=73.86 E-value=2.4 Score=45.34 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s-~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
..++|..+|.+|+|+|..-=.+..+. ..| .-|| -+..||..|++.|+++||.|||-.=
T Consensus 26 W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df-------~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDF-------TGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHhCCcceEEEeccccccCCCCC--cccc-------cchhhHHHHHHHHHHcCcEEEeccc
Confidence 56889999999999998643222111 111 1222 2347899999999999999998753
No 113
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=72.24 E-value=7 Score=35.19 Aligned_cols=44 Identities=23% Similarity=0.574 Sum_probs=33.5
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 351 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD 351 (658)
-.-+.+-++.+.++|+.++|+.|= ..-+++++.|+++||+|+..
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 566888899999999999999984 44678889999999999864
No 114
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=72.11 E-value=3.2 Score=39.95 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHhCccccCCCee-------EEee----cCCEEEEEEC-------------CEEEEEEeCCCCC
Q 006158 582 FSHYRQEIEALLSVRKRNKIHCRSRVE-------IVKA----ERDVYAAIID-------------EKVAMKLGPGHYE 635 (658)
Q Consensus 582 ~~Wl~~~~~~Li~lRk~~pal~~G~~~-------~l~~----~~~v~a~~r~-------------~~vlvvvnn~~~~ 635 (658)
+.+..++|+.|++||+++|.|+-++-+ +... ..++++...+ +.++||+|-+...
T Consensus 40 I~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~ 117 (168)
T PF11852_consen 40 IAAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-
T ss_pred HHHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCe
Confidence 334789999999999999999877432 3333 2478888652 2477777766544
No 115
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=71.60 E-value=3.5 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=34.3
Q ss_pred CcH-HHHHHhHHHHHHcCCCEEEeCCCCCCC--CCCCCCcccCCCCCCCCCCHHHHH
Q 006158 282 RWY-MELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELK 335 (658)
Q Consensus 282 Gdl-~Gi~~kLdYLk~LGv~~I~L~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk 335 (658)
||| ..+.+-+|.+++.|++.++|.|+++.. ....|.+.+-+.+||.|=+.+.+.
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~ 71 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALP 71 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhh
Confidence 899 999999999999999999999999876 334899999999999997766544
No 116
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=71.28 E-value=11 Score=39.86 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=72.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC-----------CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGD 351 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD-----------p~~Gt~edlk~LV~~aH~~GikVIlD 351 (658)
+..-|.+-+|.++.+++|.++|== .+. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl-~D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHL-TDD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEee-ecC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 377888889999999999987621 011 11222222221111 11236899999999999999999999
Q ss_pred e-ccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 006158 352 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 429 (658)
Q Consensus 352 ~-V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~ 429 (658)
+ ++.|+..--.. + +.-...+ +.... . ...--.||..+|++.+++.+++..+++-+
T Consensus 92 iD~PGH~~a~~~~-------~-------p~l~~~~---~~~~~----~--~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 92 IDMPGHSTAFVKS-------F-------PKLLTEC---YAGLK----L--RDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred ccchHHHHHHHHh-------C-------HHhccCc---cccCC----C--CCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 8 56777642110 0 0000000 00000 0 01123588899999999999988887533
No 117
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=70.83 E-value=6.6 Score=42.19 Aligned_cols=136 Identities=12% Similarity=0.161 Sum_probs=73.1
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC------C----CCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------S----RYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD------p----~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
.+.-|.+-+|.++.+++|.++|=- .+.. .+++....|-.+. + .+=|.+|+++||+.|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl-~D~~-~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHL-SDDQ-GFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEE-ESST-CB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEE-ecCC-CCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 478899999999999999998721 1111 1111111110000 0 03368999999999999999999998
Q ss_pred -ccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCc
Q 006158 353 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431 (658)
Q Consensus 353 -V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GI 431 (658)
++.|++.-... +..+.. ..|.. ....+........-..||..+|++.+++.+++..+++-+.-
T Consensus 94 d~PGH~~~~l~~----~p~~~~-~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 157 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGC-SAWPE-----------DKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS 157 (351)
T ss_dssp EESSS-HHHHHH----HHHHCC-CHTTC-----------SSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHh----Cchhhc-ccccc-----------ccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC
Confidence 67787642110 000000 00000 00000000001111258889999999999999888866664
Q ss_pred cEEEE
Q 006158 432 DGWRL 436 (658)
Q Consensus 432 DGfRl 436 (658)
.-|.+
T Consensus 158 ~~iHi 162 (351)
T PF00728_consen 158 KYIHI 162 (351)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 44444
No 118
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.94 E-value=22 Score=37.63 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=69.4
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC--CCCCCCCCCCCcccCCCCC--CCCCCHHHHHHHHHHHHHcCCEEEEEe-ccccc
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP--PTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 357 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P--i~~~~s~~GYd~~Dy~~vD--p~~Gt~edlk~LV~~aH~~GikVIlD~-V~NHt 357 (658)
+..-|.+-+|.++.+|+|.++|== -|+..+ +-.+. ...=|.+|+++|++-|.++||.||-.+ ++.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~--------~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEG--------EPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCC--------CcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 377788999999999999998721 111111 11111 122278999999999999999999877 45666
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 006158 358 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 430 (658)
Q Consensus 358 ~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~G 430 (658)
..--.. ..|.. ..+.. ...-.||..+|+..+++.+.+...++-+.
T Consensus 87 ~~~l~~-----~~~~~---------------l~~~~--------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKH-----PEFRH---------------LREVD--------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhC-----ccccc---------------ccccC--------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 431110 00100 00000 00224788899999999988888775443
No 119
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=69.64 E-value=12 Score=44.18 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=57.5
Q ss_pred eeEeeeeeccC--CCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCC-----CCCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 006158 267 EILCQGFNWES--HKSGRWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVVN 339 (658)
Q Consensus 267 ~~~~~~F~W~~--~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~-----~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~ 339 (658)
.+.+|-|.-.+ +..-|||..+.+-++.+++.|.+.+.|+|+... ..+..|.+.+-+.+||.|=..+++-++..
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 46666664443 222399999999999999999999999999953 25678999999999999999887766543
No 120
>PLN02635 disproportionating enzyme
Probab=69.55 E-value=11 Score=43.18 Aligned_cols=68 Identities=18% Similarity=0.007 Sum_probs=51.5
Q ss_pred eeEeeeeeccCCCCCCcHHHHH-HhHHHHHHcCCCEEEeCCCCCCC-----CCCCCCcccCCCCCCCCCCHHHH
Q 006158 267 EILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDEL 334 (658)
Q Consensus 267 ~~~~~~F~W~~~~~GGdl~Gi~-~kLdYLk~LGv~~I~L~Pi~~~~-----s~~GYd~~Dy~~vDp~~Gt~edl 334 (658)
.+.++-|.--+...-|||-... +-+|.+++.|.+.++|+|+.+.. .+..|.+.+=+..||.|=+.+.|
T Consensus 31 Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L 104 (538)
T PLN02635 31 GILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEEL 104 (538)
T ss_pred EEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhh
Confidence 3666665433332239997755 78999999999999999998874 46779999989999888776544
No 121
>PLN02950 4-alpha-glucanotransferase
Probab=69.41 E-value=16 Score=44.58 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=54.1
Q ss_pred eeEeeeeeccCCC-CC-CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCC------CCCCCcccCCCCCCCCCCHHHHHH
Q 006158 267 EILCQGFNWESHK-SG-RWYMELKEKATELSSLGFSVIWLPPPTESVS------PEGYMPRDLYNLSSRYGNIDELKD 336 (658)
Q Consensus 267 ~~~~~~F~W~~~~-~G-Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s------~~GYd~~Dy~~vDp~~Gt~edlk~ 336 (658)
.+.++-|.-.+.. .| |||.++.+-+|.+++.|.+.|+|+|+.+... .-.|.+.+-+++||.|=+.++|-+
T Consensus 263 Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~ 340 (909)
T PLN02950 263 GVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSE 340 (909)
T ss_pred EEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHh
Confidence 4556665433332 13 9999999999999999999999999987652 137999999999999998876643
No 122
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=68.13 E-value=62 Score=33.41 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch----HHHHHHHHHhCCCEE
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEPYFA 459 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~----~~~~~~~~~~~p~~l 459 (658)
.+++-|+.+++.+..+++++|+||+-||--..... .+++++..+..+.++
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~~~~ 145 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGPDFI 145 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCCCcE
Confidence 34555666677777777799999999998543222 344554444444443
No 123
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=68.04 E-value=95 Score=32.62 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=73.3
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHH-HHHHH-HHHHHcCCEEEEEeccccccCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVV-NKFHDVGMKILGDVVLNHRCAHYQNQ 364 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~ed-lk~LV-~~aH~~GikVIlD~V~NHt~~~~~~~ 364 (658)
+-.-++.|++||+|+|||.++.+..++.-.+.. |=++.++--.+| |-+.+ +...+.|++|..=+.. .+-+-+.
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~- 93 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK- 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC-
Confidence 445567899999999999999887765444432 334445544555 55555 3444889999876654 1211110
Q ss_pred CCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 365 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 365 ~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
.. .|.... .. .. .-....-|..-+|++|+.|.++-.-+..--.|||+=|
T Consensus 94 -~~--------~~~~~~-------~~-~~------~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 -VK--------RADEVR-------TD-RP------DPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred -cc--------hhhhcc-------cc-CC------CCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 000000 00 00 0112234566789999999999999985459999888
No 124
>PLN02316 synthase/transferase
Probab=67.10 E-value=22 Score=43.91 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=61.6
Q ss_pred EeeeEEEEEEeCCCCCceEEEEecCC-----CCCeEEEeeeeeCCCCCcccCCCCCCCCccccccccccccccccCC-CC
Q 006158 44 IENTVSVSVRKCPETAKTLLNLETDL-----TGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEG-GK 117 (658)
Q Consensus 44 ~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~lhWg~~~~~~~~W~~p~~~~p~~~~~~~~~a~~t~~~~~~~-~~ 117 (658)
..|+.+|.=..-.-+..++|.+-.+. ..++++| |-. ..|...+ .-+.|.+++. ++
T Consensus 139 ~~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~-~gf----N~W~~~~--------------f~~~~~k~~~~g~ 199 (1036)
T PLN02316 139 RGNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIM-GAF----NGWRWKS--------------FTERLEKTELGGD 199 (1036)
T ss_pred CCCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEE-ecc----ccccccc--------------cceeccccccCCC
Confidence 34455544433334457777776655 3466777 222 1354421 2344555554 44
Q ss_pred ceEEEEecCCceeeeEEEEEcCCccccccCCCcceecCC
Q 006158 118 GCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPLT 156 (658)
Q Consensus 118 ~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~G~~f~v~~~ 156 (658)
-++++|.|+..-..|.||+.+.+..|-||+|.||++++.
T Consensus 200 ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~Df~~~V~ 238 (1036)
T PLN02316 200 WWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKDFCVEIE 238 (1036)
T ss_pred eEEEEEecCccceEEEEEEeCCccccccCCCCceEEEeC
Confidence 478889998887889999977788999999999999985
No 125
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=66.62 E-value=16 Score=38.20 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=35.8
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHH---HHHHHHHHcCCEEEEEec
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELK---DVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk---~LV~~aH~~GikVIlD~V 353 (658)
.+.|.-||.-|||.|-|-= + ++.||. .=++-.|+..|++ ++.++|.+.||||++|+-
T Consensus 66 qD~~~iLK~~GvNyvRlRv-w----ndP~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-W----NDPYDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-e----cCCccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc
Confidence 4567889999999976521 1 111221 1123334444544 566788889999999983
No 126
>smart00632 Aamy_C Aamy_C domain.
Probab=65.72 E-value=9.6 Score=31.90 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=18.7
Q ss_pred cCCEEEEEECCEEEEEEeCCCC
Q 006158 613 ERDVYAAIIDEKVAMKLGPGHY 634 (658)
Q Consensus 613 ~~~v~a~~r~~~vlvvvnn~~~ 634 (658)
++++|+|.|+++.+|++|++..
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCC
Confidence 3349999999999999999764
No 127
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=64.33 E-value=60 Score=35.09 Aligned_cols=147 Identities=12% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 365 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~ 365 (658)
..+-.+-+|++|...|-|+--+--. .-|-=..++|..++..+ ..+=+++|+++|+++|||+.+ +-|..+
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~---Y~S~~d------ 162 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL---YYSPWD------ 162 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE---EEESSS------
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE---EecchH------
Confidence 4555678899999999876543222 11222334555555333 346799999999999999998 222221
Q ss_pred CCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCch
Q 006158 366 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH-SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 444 (658)
Q Consensus 366 g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~-~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~~ 444 (658)
|+...... ...... ...++..- ....+.++...-++.++..|.+|.+=+|....-..
T Consensus 163 -----------w~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~ 220 (346)
T PF01120_consen 163 -----------WHHPDYPP-----DEEGDE------NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPD 220 (346)
T ss_dssp -----------CCCTTTTS-----SCHCHH------CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCC
T ss_pred -----------hcCcccCC-----CccCCc------ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccc
Confidence 11100000 000000 00000000 01224457777888888899999999999754211
Q ss_pred -----HHHHHHHHHhCCCEEEEcccC
Q 006158 445 -----GYVKDYLEATEPYFAVGEYWD 465 (658)
Q Consensus 445 -----~~~~~~~~~~~p~~lvGE~w~ 465 (658)
.-+.+.+++..|..++..-|.
T Consensus 221 ~~~~~~~~~~~i~~~qp~~ii~~r~~ 246 (346)
T PF01120_consen 221 EDWDSAELYNWIRKLQPDVIINNRWG 246 (346)
T ss_dssp THHHHHHHHHHHHHHSTTSEEECCCS
T ss_pred cccCHHHHHHHHHHhCCeEEEecccC
Confidence 122234566678766654444
No 128
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=64.04 E-value=13 Score=47.01 Aligned_cols=68 Identities=19% Similarity=0.053 Sum_probs=53.1
Q ss_pred eeEeeeeeccC--CCCCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-CC----CCCCcccCCCCCCCCCCHHHH
Q 006158 267 EILCQGFNWES--HKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDEL 334 (658)
Q Consensus 267 ~~~~~~F~W~~--~~~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-s~----~GYd~~Dy~~vDp~~Gt~edl 334 (658)
.+.+|-|.-.+ +..-|||..+.+-++.+++.|.+.|+|+|+.... .+ ..|.+.+-+.+||.|=+.+.|
T Consensus 726 Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 726 GILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred EEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 45566654333 2223999999999999999999999999998865 33 679999999999988876644
No 129
>PLN03059 beta-galactosidase; Provisional
Probab=63.20 E-value=15 Score=43.98 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=42.8
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
-+-..++|.-+|.+|+|+|..==++..+.. .+-. -.|.+..||.++++.|++.||.||+=.
T Consensus 58 p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp---~~G~-----~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 58 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---SPGN-----YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccccCC---CCCe-----eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 345678889999999999985333322211 1111 124568899999999999999999854
No 130
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=62.88 E-value=28 Score=31.06 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=36.9
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV-GMKILG 350 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~-GikVIl 350 (658)
-.++..++..|++-|+++|+|+.=.....+++.-|. +.+|.+...++ |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~--------------~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH--------------IDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC--------------HHHHHHHHHHHhCCCEee
Confidence 567888889999999999999986665554443222 34444444455 998874
No 131
>PLN02316 synthase/transferase
Probab=62.20 E-value=29 Score=42.94 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=56.9
Q ss_pred CCCeEEEeeeeeCCCCCcccCCCCCCCCccccccccccccccccCCCCceEEEEecCCceeeeEEEEEcC--CccccccC
Q 006158 70 TGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLN--ENTWLKCM 147 (658)
Q Consensus 70 ~~~~~lhWg~~~~~~~~W~~p~~~~p~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~~~~~~~Fvl~~~--~~~W~k~~ 147 (658)
...+.||||-.+ |..+....||- -|++.+++..+++.+.+...---|-||+.+. +..|-|++
T Consensus 507 ~~ev~~~g~~Nr-----Wth~~~~~~~~-----------~m~~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~~ 570 (1036)
T PLN02316 507 KPEVWFRGSFNR-----WTHRLGPLPPQ-----------KMVPADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNRN 570 (1036)
T ss_pred CceEEEEccccC-----cCCCCCCCCce-----------eeeecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCCC
Confidence 457889998765 88887655443 2345566667788888877777789999654 78999999
Q ss_pred CCcceecCCCCCCC
Q 006158 148 ENDFYIPLTSSSCL 161 (658)
Q Consensus 148 G~~f~v~~~~~~~~ 161 (658)
|.||++|+..+...
T Consensus 571 ~~dyh~~v~g~~~~ 584 (1036)
T PLN02316 571 GLDYHIPVFGGIAK 584 (1036)
T ss_pred CcCCcccccCCCCC
Confidence 99999999865443
No 132
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=61.52 E-value=11 Score=39.85 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcccC
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 440 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~ 440 (658)
+++..|+.+++.+..+++++|+||+-||--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 5688899888888877779999999999853
No 133
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.38 E-value=89 Score=33.57 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.||.|++++|++|-++++-+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5689999999999999999886 6887653
No 134
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=60.61 E-value=24 Score=36.01 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 291 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 291 LdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
|+++++|||++|.++==+ ..+ ..++..+||+.++++|++|+-.+
T Consensus 77 l~~~k~lGf~~IEiS~G~-------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 77 LNECDELGFEAVEISDGS-------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHcCCCEEEEcCCc-------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 449999999999986322 112 36789999999999999999664
No 135
>PRK15447 putative protease; Provisional
Probab=59.34 E-value=31 Score=36.57 Aligned_cols=56 Identities=5% Similarity=0.248 Sum_probs=40.8
Q ss_pred eeccCCCCCCcHHHHHHhHHHHHHcCCCEEEeCC-CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 273 FNWESHKSGRWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 273 F~W~~~~~GGdl~Gi~~kLdYLk~LGv~~I~L~P-i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
|.|- .|++.... ..|++.|+++||+.- .|.... + | +.+++++.|+.||++|.+|.+
T Consensus 10 ~~~p----~~~~~~~~---~~~~~~gaDaVY~g~~~~~~R~-------~-------f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP----KETVRDFY---QRAADSPVDIVYLGETVCSKRR-------E-------L-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC----CCCHHHHH---HHHHcCCCCEEEECCccCCCcc-------C-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 5664 46665554 457888999999983 122111 1 2 679999999999999999998
No 136
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=59.21 E-value=23 Score=42.11 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=52.4
Q ss_pred eEeeeeeccCC-CCC-CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCC-----C-CCCCcccCCCCCCCCCCHHHHH
Q 006158 268 ILCQGFNWESH-KSG-RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 335 (658)
Q Consensus 268 ~~~~~F~W~~~-~~G-Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s-----~-~GYd~~Dy~~vDp~~Gt~edlk 335 (658)
+.++-|.-.+. ..| |||-.+.+-+|.+++.|.+.|+|+|+.+... + -.|.+.+=+++||.|=+.+.|.
T Consensus 64 ill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 64 MALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred eeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 55555533333 123 8999999999999999999999999987651 2 3799999999999998877664
No 137
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=59.19 E-value=26 Score=36.92 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCC-----CCCCCCc--------ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-----s~~GYd~--------~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
...+..-|+.+++-|||+|+++=+-+.. ...|+.+ .||..++|.| -+.+...|+.|.++||.+.
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~- 105 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA- 105 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE-
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE-
Confidence 4556667999999999999986554432 1123333 3555555444 4679999999999999884
Q ss_pred Eecccc
Q 006158 351 DVVLNH 356 (658)
Q Consensus 351 D~V~NH 356 (658)
+|+=|
T Consensus 106 -lv~~w 110 (289)
T PF13204_consen 106 -LVPFW 110 (289)
T ss_dssp -EESS-
T ss_pred -EEEEE
Confidence 66655
No 138
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=59.03 E-value=17 Score=40.22 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEe
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt---~edlk~LV~~aH~~GikVIlD~ 352 (658)
..+-++++|+.|+|+|-++=-+.+- .+... .+|.+=. ..=+.+.|+.|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~------~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QATDG------DNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hccCC------CCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 4677889999999999973222332 11110 4554432 2246777999999999999997
No 139
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=58.24 E-value=14 Score=31.53 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=18.8
Q ss_pred EeecCCEEEEEECC----EEEEEEeCCCC
Q 006158 610 VKAERDVYAAIIDE----KVAMKLGPGHY 634 (658)
Q Consensus 610 l~~~~~v~a~~r~~----~vlvvvnn~~~ 634 (658)
...++++|||.|.+ .++||+|.+..
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~ 33 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPE 33 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCc
Confidence 44567999999932 58888887775
No 140
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=57.67 E-value=26 Score=30.20 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=24.0
Q ss_pred EEeecCCEEEEEE---CCEEEEEEeCCCCCCCCCCCCeEEEEcCCC
Q 006158 609 IVKAERDVYAAII---DEKVAMKLGPGHYEPPSGSQNWSFVTEGRD 651 (658)
Q Consensus 609 ~l~~~~~v~a~~r---~~~vlvvvnn~~~~~~~~~~~~~~~~~g~~ 651 (658)
.++.+++.+|+++ +.++|++++|..... ++.+++.+++.+
T Consensus 1 piy~d~~~~a~rKG~~g~qvi~vltN~Gs~~---~~~~~~~v~~~~ 43 (91)
T PF09260_consen 1 PIYSDDSTIAFRKGPDGSQVIVVLTNQGSNS---GGSYTLTVPNTG 43 (91)
T ss_dssp EEEEETTEEEEEESSTTT-EEEEEE-S-T-T------EEEEESS--
T ss_pred CeEECCcEEEEEeCCCCCEEEEEEeCCCcCC---CCcEEEEEcCCC
Confidence 3678889999998 357888888866633 345777777443
No 141
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=57.21 E-value=50 Score=36.96 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ccccccC
Q 006158 330 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 359 (658)
Q Consensus 330 t~edlk~LV~~aH~~GikVIlD~-V~NHt~~ 359 (658)
|.+|.+++|+-|.-||||||..+ ++.|+++
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68899999999999999999998 6788886
No 142
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=56.19 E-value=48 Score=32.39 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcccC
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 440 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~ 440 (658)
.++..|+.+++.+..+++++|+||+-+|--.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 5677788888888878889999999999854
No 143
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.65 E-value=47 Score=35.33 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=37.4
Q ss_pred HHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG---NIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 294 Lk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~G---t~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.++=|+.-|..-...-++...+|. -.+.+- ..+.||+|++++|+.|-++++-+ +|.|...
T Consensus 42 ra~gg~glii~e~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 42 RAKGGVGLIITEAAYVDPEGKGYP------GQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HhCcCCcEEEECcEEEcCcccCCC------CCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 344577777665554444322211 111111 35689999999999999998765 7887654
No 144
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=55.65 E-value=1e+02 Score=33.70 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.|++|++++|++|-++++-+. |.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCC
Confidence 56899999999999999999874 888643
No 145
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=52.67 E-value=27 Score=40.47 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
=..++|...|++|+|+|+-- +|-+. |--.+--| .|.+.-||..||++||+.|+.|||=+=
T Consensus 50 ~W~~~i~k~k~~Gln~IqtY-VfWn~--Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTY-VFWNL--HEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred hhHHHHHHHHhcCCceeeee-eeccc--ccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCC
Confidence 35577888999999999853 33332 11111111 467888999999999999999999764
No 146
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=52.57 E-value=32 Score=40.95 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~N 355 (658)
..++++.+.|+++||+||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 368889999999999999999885
No 147
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.40 E-value=2e+02 Score=30.02 Aligned_cols=96 Identities=9% Similarity=0.115 Sum_probs=66.3
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCC
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 365 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~ 365 (658)
...+-++...+.|++.|.+. ...++ .+.++..|+.|+++|++|..-+.+-..+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~---~~~~~-----------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~------ 145 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIF---DALND-----------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV------ 145 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEe---ecCCh-----------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC------
Confidence 35666778889999998872 12221 57899999999999999886442211100
Q ss_pred CCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE-cccCCCch
Q 006158 366 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWG 444 (658)
Q Consensus 366 g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~ 444 (658)
+ + .+++.+.++... +.|+|.+++ |.+..+.+
T Consensus 146 -----~---------------------------------------~---~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P 177 (275)
T cd07937 146 -----H---------------------------------------T---LEYYVKLAKELE-DMGADSICIKDMAGLLTP 177 (275)
T ss_pred -----C---------------------------------------C---HHHHHHHHHHHH-HcCCCEEEEcCCCCCCCH
Confidence 0 0 256777777776 899999998 88877777
Q ss_pred HHHHHHHHHhC
Q 006158 445 GYVKDYLEATE 455 (658)
Q Consensus 445 ~~~~~~~~~~~ 455 (658)
..+.++++.++
T Consensus 178 ~~v~~lv~~l~ 188 (275)
T cd07937 178 YAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHH
Confidence 76676666654
No 148
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=51.42 E-value=26 Score=37.33 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=45.9
Q ss_pred HHhHHHHHHcCCC-EEEeCCCCCCCCCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 288 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 288 ~~kLdYLk~LGv~-~I~L~Pi~~~~s~~GYd~~Dy-~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.++|..|++.|++ .|.|.+=.-+ ..-. ..++..+ +.+++.+.++.+|++||+|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6788999999998 6988652211 1112 2455555 78899999999999999999999986
No 149
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.41 E-value=1.6e+02 Score=32.42 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccc-cCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHR-CAH 360 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt-~~~ 360 (658)
.+.||+|++++|++|-++++-+ +|. |..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999776 576 543
No 150
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=49.91 E-value=38 Score=34.77 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=38.9
Q ss_pred CCcHHHH-------HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 281 GRWYMEL-------KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 281 GGdl~Gi-------~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
||||-.+ .+-|+++++|||++|.++= |.-.. +.++..++|+.+.++|++|+-.+=
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l----------~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD--------GTIDL----------PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC--------CceeC----------CHHHHHHHHHHHHHCCCEEeeccc
Confidence 7776554 3557899999999999863 22222 367899999999999999998873
No 151
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=47.39 E-value=61 Score=32.53 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=43.3
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCc--ccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMP--RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~--~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
-..|.+-.+.|+++|+..|.|+|.+.... +.|.- .+|.--+-.-=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~-~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYGE-PKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccch-hHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 45555666788889999999999876541 12210 11111121222678999999999999999975
No 152
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.27 E-value=1.7e+02 Score=32.00 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.|++|++++|+.|=++++-+ +|.|...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 4689999999999999999887 7877643
No 153
>PTZ00445 p36-lilke protein; Provisional
Probab=47.20 E-value=45 Score=33.48 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHhHHHHHHcCCCEEEe---CCCCCCCCCCCCCcccCCCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 006158 286 ELKEKATELSSLGFSVIWL---PPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L---~Pi~~~~s~~GYd~~Dy~~vDp~~Gt--~edlk~LV~~aH~~GikVIl 350 (658)
.+-.-.+.|++.||.+|-. +=+... ...||+-.+ +-+..+++ ..+|+.|++++.+.||+|++
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~-HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITK-HSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhh-hcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 3334456799999999974 111111 234555443 33333432 35699999999999999975
No 154
>PLN02950 4-alpha-glucanotransferase
Probab=47.02 E-value=40 Score=41.33 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCEEEEEeccc
Q 006158 333 ELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 333 dlk~LV~~aH~~GikVIlD~V~N 355 (658)
.++++.+.|+++||+||.|+.+-
T Consensus 462 Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 462 QLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHCCCEEEEEeece
Confidence 68899999999999999999884
No 155
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=46.66 E-value=41 Score=34.72 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=37.9
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
+.+.++.++++|+++|.|.+... . -...+.++ +.+++++|.+.+.++||+|..
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~-~--~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDES-D--ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCc-c--cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 77899999999999999964311 0 00111111 456899999999999999874
No 156
>PRK07094 biotin synthase; Provisional
Probab=46.59 E-value=31 Score=36.71 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=47.9
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
.+.+..|++.|++.|.+..=. .++.-|-.+.+. .+.++..+.++.+|+.||.|..++++.+-+..
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs-------~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHET-------ADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHHHHHHHcCCCEEEecccc-------CCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 467889999999998865422 122223344443 57889999999999999999999999875543
No 157
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=46.10 E-value=38 Score=38.49 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=48.1
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccccccC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCA 359 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gi-kVIlD~V~NHt~~ 359 (658)
.++|..|++.|++.|.|.|=.-+ ..-...+.. -.+.+++.+.++.|++.|+ .|-+|+.+.--+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~-------d~vLk~igR-~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMN-------DETLKAIGR-HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCC-------HHHHHHhCC-CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 57899999999999998872222 222234432 3588999999999999999 7889999976543
No 158
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=46.04 E-value=39 Score=36.62 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=48.1
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.++|..|+++||+.|.|..=. .+..-+..+ -+-.+.++..+.++.+++.|+. |-+|+.+...+..
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS-------~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQS-------FRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEeccc-------CChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 478999999999999986521 222222333 2456788999999999999996 7899999876544
No 159
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=45.92 E-value=3.4e+02 Score=28.81 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=75.5
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt---~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
=+-+.+++..||+-|+|++-+-== .--++-.|...| .+....++ --|.+.+|++|.++||.+|.=+|.=.-..-
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~K-dd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~l 152 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVK-DDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTIL 152 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEec-CCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeeeE
Confidence 445667788999999999864211 111334455554 33333333 237889999999999999998875211100
Q ss_pred CCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 361 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGN--KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 361 ~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~--~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
.. |++|.- .-|... .+ -..|...+- +..+ .--++--++.+++|=+.+++.-+ ++|+|-..||-
T Consensus 153 ~~-----~n~fk~-av~~~g-Kp--w~~~~ngaLrKe~~~-----ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQFDY 217 (400)
T COG1306 153 AK-----ENPFKI-AVYKDG-KP--WKAFTNGALRKESDG-----EHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQFDY 217 (400)
T ss_pred Ee-----ecCceE-EEEcCC-Cc--chhhhcccccccccc-----eeeecccchhhhhhhHHHHHHHH-HcCccceeeeE
Confidence 00 011100 001000 00 000100000 0000 11133457899999999999988 89999999987
Q ss_pred c
Q 006158 439 V 439 (658)
Q Consensus 439 a 439 (658)
+
T Consensus 218 I 218 (400)
T COG1306 218 I 218 (400)
T ss_pred E
Confidence 5
No 160
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=45.71 E-value=28 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=14.1
Q ss_pred eecCCEEEEEE--C-CEEEEEEeCCCCC
Q 006158 611 KAERDVYAAII--D-EKVAMKLGPGHYE 635 (658)
Q Consensus 611 ~~~~~v~a~~r--~-~~vlvvvnn~~~~ 635 (658)
...+++|+|.| + +.++|++|+++..
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~~ 33 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDKE 33 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS-
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCCC
Confidence 35678999887 4 4555556555433
No 161
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=45.65 E-value=24 Score=38.74 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
.++++++...|..||.+||+.|-+-= |.|..+...|+-. ..++|.+.+++.|+||..=+-|.-+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs-------------~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS-------------GYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H-------------HHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH-------------HHHHHHHHHHHcCCeEEEEEeeecC
Confidence 46788999999999999999997632 2233344445543 5899999999999999999999887
Q ss_pred cCC
Q 006158 358 CAH 360 (658)
Q Consensus 358 ~~~ 360 (658)
+..
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 162
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=45.32 E-value=2.4e+02 Score=30.84 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
.+.|+.+++++|+.|=++++-+ +|.|..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5689999999999999999987 888854
No 163
>PLN02411 12-oxophytodienoate reductase
Probab=44.96 E-value=1.8e+02 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.||+|++++|++|-++++-+ +|.|...
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~~ 114 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRAS 114 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCC
Confidence 4579999999999999999887 6887654
No 164
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=44.67 E-value=22 Score=37.55 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec
Q 006158 330 NIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 330 t~edlk~LV~~aH~~GikVIlD~V 353 (658)
+.++|+++.+-||++||+|.||..
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 478999999999999999999984
No 165
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=44.59 E-value=42 Score=36.44 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=42.6
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-----------------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV-----------------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 343 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-----------------s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~ 343 (658)
||+..=+..- |+.+||++.++-|.-... +|-++++. |+..+.+-||+
T Consensus 112 GGT~~lf~~t---l~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~-------------Die~ia~iAh~ 175 (426)
T COG2873 112 GGTYNLFSHT---LKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVL-------------DIEAIAEIAHR 175 (426)
T ss_pred CchHHHHHHH---HHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCcccc-------------CHHHHHHHHHH
Confidence 6765533222 699999999998764211 45555555 48999999999
Q ss_pred cCCEEEEEeccc
Q 006158 344 VGMKILGDVVLN 355 (658)
Q Consensus 344 ~GikVIlD~V~N 355 (658)
+|+-+|+|=.|-
T Consensus 176 ~gvpliVDNT~a 187 (426)
T COG2873 176 HGVPLIVDNTFA 187 (426)
T ss_pred cCCcEEEecCCC
Confidence 999999997664
No 166
>TIGR03356 BGL beta-galactosidase.
Probab=44.33 E-value=49 Score=36.92 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
+.-..+-++-|++||++++=++=-+...-..|- -. ..-...+-++++|++|+++||++|+++.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~-----~~--~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT-----GP--VNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCC-----CC--cCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 666778999999999999886432221111111 01 1222356789999999999999999985
No 167
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=43.81 E-value=38 Score=37.81 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE-EEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVI-lD~V~NHt~~~ 360 (658)
.++|..|+++|++.|.|.-=. .+......+.... +.++..+.++.+++.|+.+| +|+.++.-+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS-------~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQS-------FHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEeccc-------CCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 478999999999999986411 1111122333322 67789999999999999865 99999866544
No 168
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=43.37 E-value=44 Score=36.45 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.++|+.|+++|++.|.|..=. .+..-...++ +-.+.++..+.++.+++.|+. |.+|++++.-+..
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS-------~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQS-------AAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEEeccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 378899999999999986511 1112122333 224677888999999999999 9999999876544
No 169
>PRK01060 endonuclease IV; Provisional
Probab=43.02 E-value=52 Score=34.02 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 348 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikV 348 (658)
.++.+.|+.++++|+++|.|.+-- .+.+. +..-+.+++++|.+.+.++||+|
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 347788999999999999986521 11111 11137888999999999999995
No 170
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=42.93 E-value=3.8e+02 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.|++|++++|++|-++++-+ +|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL--~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQL--WHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEec--cCCCCCC
Confidence 4689999999999999999965 7888654
No 171
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.75 E-value=60 Score=33.34 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVI 349 (658)
+.+.|+.++++|+++|.|.+- ..|-|. +.+ +..++++|.+++.+.||+|.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~----~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGG----RPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccC----Cccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 889999999999999998421 111121 111 34578999999999999985
No 172
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.63 E-value=53 Score=34.30 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=45.6
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
.+.+..|++.|++.|.+. ++ .+ +.-|..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-----~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-----QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-----HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 577899999999999997 33 21 2223334443 4788999999999999999999888865
No 173
>PRK06256 biotin synthase; Validated
Probab=42.46 E-value=34 Score=36.69 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
.+.+..|++.|++.+.+.. ++ + ..-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-----RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-----HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4678889999999998753 32 2 2224455554 3788999999999999999999999976
No 174
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=42.10 E-value=3.3e+02 Score=29.12 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=40.5
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCC--CcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGY--MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GY--d~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
+......++=|+..|..-...-++...+| .+.-| ++ .-.+.||+|++++|+.|-++++-+ +|.|...
T Consensus 36 ~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 36 LVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 33334444567888876655544422221 11100 11 125689999999999999999887 6777643
No 175
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.82 E-value=2e+02 Score=31.06 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.||+|++++|++|-+|++- ++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~~Q--L~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQ--IFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEE--ecCCCCCC
Confidence 578999999999999999855 48887653
No 176
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=41.48 E-value=4.4e+02 Score=27.66 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=71.5
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCC
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 363 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~ 363 (658)
++-+-.++..|.+-+++.|-+=|-.. ..+-.=.+.++|+.+. +.|.++|.=+-+....+...
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~~-------------g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~- 90 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSYC-------------GPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRF- 90 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecccc-------------CCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhh-
Confidence 44456678888888888888776311 1112224577888654 45677776666544433221
Q ss_pred CCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCCC
Q 006158 364 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 442 (658)
Q Consensus 364 ~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~ 442 (658)
| |+.... ...+.+-+..++ .|++--...|..|+-++-+...+..++ +.|+||.-+|.+...
T Consensus 91 -------Y-----wd~~w~-~~~p~wLg~edP----~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 91 -------Y-----WDKYWL-TGRPDWLGEEDP----EWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred -------H-----hhhhhh-cCCcccccCCCC----CCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 1 111000 011112111111 122233466788998888888999998 899999999998754
No 177
>PLN02803 beta-amylase
Probab=41.02 E-value=79 Score=35.95 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 285 MELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
+++...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+.+.|+||..=+-|.-+|..
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE-------------GYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 8899999999999999997632 3333344555544 4789999999999999999999887764
No 178
>PRK05660 HemN family oxidoreductase; Provisional
Probab=40.70 E-value=51 Score=36.08 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=48.0
Q ss_pred HhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE-EEEeccccccCC
Q 006158 289 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCAH 360 (658)
Q Consensus 289 ~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikV-IlD~V~NHt~~~ 360 (658)
++|..|+++|||.|.|.. ...++.-+..+.. ..+.++..+-++.+++.|++. -+|+.+..-+..
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~r-~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLGR-IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 899999999999999865 2223333334443 357888889999999999975 599999876643
No 179
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=40.51 E-value=3.6e+02 Score=27.93 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 367 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~ 367 (658)
++.|+...+.|++.|.+.= ..-..+..+.+|+.|+++|++|.+-+..-+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~--------- 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY--------- 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC---------
Confidence 4566777888999887731 00157889999999999999888665442110
Q ss_pred cccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE-cccCCCchHH
Q 006158 368 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 446 (658)
Q Consensus 368 ~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~ 446 (658)
+ .+++.+.++... ++|+|.+++ |.+..+.+.-
T Consensus 136 -------------------------------------------~---~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 136 -------------------------------------------S---DEELLELLELVN-EIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHH
Confidence 0 256777777766 789999998 8887777665
Q ss_pred HHHHHHHh
Q 006158 447 VKDYLEAT 454 (658)
Q Consensus 447 ~~~~~~~~ 454 (658)
+.++++++
T Consensus 169 v~~lv~~l 176 (266)
T cd07944 169 IKRIISLL 176 (266)
T ss_pred HHHHHHHH
Confidence 66655554
No 180
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=40.40 E-value=29 Score=34.50 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=49.2
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCC---CCCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEE
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGD 351 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s---~~GYd~~Dy~~vDp~~Gt--------~edlk~LV~~aH~~GikVIlD 351 (658)
+...+.+.+..|+++|+. |.|-=+-...+ .-..-+.||-++|+.+-. ..-++.+++.||..|++||.+
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 345566888999999987 45433211111 111224677788865532 246999999999999999999
Q ss_pred eccccc
Q 006158 352 VVLNHR 357 (658)
Q Consensus 352 ~V~NHt 357 (658)
.|=+..
T Consensus 210 gVe~~~ 215 (241)
T smart00052 210 GVETPE 215 (241)
T ss_pred cCCCHH
Confidence 987644
No 181
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=81 Score=34.21 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=37.4
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
|++..+ ...-+-|+++||+.=- ... -.++. .+| +.++|++.|+.||++|.|+++=+
T Consensus 14 g~l~~l----~~ai~~GADaVY~G~~-~~~-~R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 14 GNLEDL----KAAIAAGADAVYIGEK-EFG-LRRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred CCHHHH----HHHHHcCCCEEEeCCc-ccc-ccccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEe
Confidence 455544 4444558999999743 211 12222 333 56789999999999999998654
No 182
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.71 E-value=71 Score=28.50 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHHcCCCEEEeCCCCCCCC-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 292 TELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 292 dYLk~LGv~~I~L~Pi~~~~s-~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
..+..+|..++.+.+...... -......|..-+=..=|...++.++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 356778999998866421110 01112222222225557788999999999999999886
No 183
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.21 E-value=2.3e+02 Score=30.49 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=42.1
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt---~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.++.....++=|+..|..-.+.-++...++ +. .+.+-+ .+.|++|++++|+.|-++++-+ +|.|...
T Consensus 35 ~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~~ 104 (343)
T cd04734 35 YIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMIQL--THLGRRG 104 (343)
T ss_pred HHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEEec--cCCCcCc
Confidence 444455556667888876655544432222 11 122223 3589999999999999999854 7877543
No 184
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=39.12 E-value=2.4e+02 Score=30.42 Aligned_cols=70 Identities=17% Similarity=0.039 Sum_probs=41.4
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
..+......++=|+.-|..-..+-.+...+| +.. ..+... .-.+.||+|++++|+.|-++++-+ +|.|..
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~-~~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~ 103 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGG-PVLNSP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRY 103 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCC-cccCCH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCC
Confidence 3444444445567877777655443322222 110 111100 135689999999999999999887 588764
No 185
>PRK05939 hypothetical protein; Provisional
Probab=38.86 E-value=77 Score=34.92 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=38.4
Q ss_pred HHHHcCCCEEEeCCCCCCC-----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 293 ELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 293 YLk~LGv~~I~L~Pi~~~~-----s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
.++.+|+..+++.+. +.. -..+-...=...+....|...+++++++.||++|+.||+|-++
T Consensus 105 ~l~~~G~~v~~v~~~-d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCC-CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 356678877776542 110 0011111111223345788899999999999999999999875
No 186
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=38.80 E-value=1.6e+02 Score=31.39 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=63.3
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCC---CCCCcccCCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEEecccccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDV--GMKILGDVVLNHRC 358 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~---~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~--GikVIlD~V~NHt~ 358 (658)
+..+.+.+..+.++||++|-|-|+-+.... ..|++.. -..+-|+++++. .|-||-|+.+....
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g------------~v~~air~iK~~~pdl~vi~DVcLc~YT 127 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNG------------LLARMVRTIKAAVPEMMVIPDICFCEYT 127 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCC------------hHHHHHHHHHHHCCCeEEEeeeecccCC
Confidence 889999999999999999999999433221 2222221 134444444444 89999999986544
Q ss_pred CCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 359 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 359 ~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
.+.+ |+-.. +=.-.|.+..+.+.+...-.. +.|+|-.
T Consensus 128 ~hGH------------------------------cGil~--------~g~i~ND~Tl~~L~~~Als~A-~AGADiV 164 (322)
T PRK13384 128 DHGH------------------------------CGVLH--------NDEVDNDATVENLVKQSVTAA-KAGADML 164 (322)
T ss_pred CCCc------------------------------eeecc--------CCcCccHHHHHHHHHHHHHHH-HcCCCeE
Confidence 3222 00000 001257788888888777776 7888754
No 187
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=38.67 E-value=41 Score=30.76 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCC-----------CCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPE-----------GYMPRDLYNLSSRYGNIDELKDVVNKFHD 343 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~-----------GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~ 343 (658)
...+.+.|+.|.+.|++.|.+.|.+-.++-| .+.-....--.|.+.+.+|++.++++.++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 3457888999999999999999999876321 11111122234777778888888888765
No 188
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=37.79 E-value=56 Score=29.32 Aligned_cols=45 Identities=9% Similarity=0.007 Sum_probs=32.6
Q ss_pred cccccccccCCCCc---eEEEEecCCceeeeEEEEEcC-CccccccCCC
Q 006158 105 ALRTLLQPKEGGKG---CSRLFTVDEEFAGFLFVLKLN-ENTWLKCMEN 149 (658)
Q Consensus 105 a~~t~~~~~~~~~~---~~~~~~~~~~~~~~~Fvl~~~-~~~W~k~~G~ 149 (658)
.-+++|++..+++. ..+.|.+..+...|.|.|... ...||..+|.
T Consensus 53 ~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~~G~ 101 (120)
T PF02903_consen 53 YKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGERGF 101 (120)
T ss_dssp EEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEETTEE
T ss_pred EEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeCCcc
Confidence 34555666444333 688899998999999999877 6788888884
No 189
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=37.20 E-value=56 Score=37.46 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
.++|+.|+++|+|.|.|..=.-.. -. ...++.. -+.++..+-++.+++.|++|.+|+.++--+.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d------~V-L~~inRg-ht~~~v~~Ai~~lr~~G~~v~~~LM~GLPgq 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYN------DI-LERTKRG-HTVRDVVEATRLLRDAGLKVVYHIMPGLPGS 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCH------HH-HHHhCCC-CCHHHHHHHHHHHHHcCCeEEEEeecCCCCC
Confidence 478999999999999987621111 11 1222221 2567788889999999999999999986553
No 190
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=37.11 E-value=92 Score=30.94 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=31.3
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 348 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikV 348 (658)
+...+..|++||++.|-..|+-- +-..+||+++.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~G------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGG------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TT------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCcee
Confidence 67788999999999999988631 124789999999999999887
No 191
>PLN02801 beta-amylase
Probab=36.83 E-value=94 Score=35.15 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-+++...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+++.|+||..=+-|..+|.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS-------------AYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 467899999999999999997632 3333344556544 578999999999999999999987775
Q ss_pred C
Q 006158 360 H 360 (658)
Q Consensus 360 ~ 360 (658)
.
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 192
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.48 E-value=75 Score=32.87 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVI 349 (658)
.+.+.|+.++++|+++|.|.+- ... -+ +++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~-~~~--~~--------~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVD-ETD--DR--------LSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-Ccc--ch--------hhccCCCHHHHHHHHHHHHHcCCCce
Confidence 3789999999999999999532 110 01 11111257889999999999999985
No 193
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.33 E-value=1e+02 Score=33.21 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-----CCCCCCccc-CCCCCCCCC-------CHHHHHHHHHHHHHcCC
Q 006158 280 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRD-LYNLSSRYG-------NIDELKDVVNKFHDVGM 346 (658)
Q Consensus 280 ~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-----s~~GYd~~D-y~~vDp~~G-------t~edlk~LV~~aH~~Gi 346 (658)
|.|++.-..+.++-.++.|.++|=+.=..... ..-.|...+ .+.-.+.|. +.+++++|.+.|++.||
T Consensus 12 H~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi 91 (327)
T TIGR03586 12 HNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGL 91 (327)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCC
Confidence 47999999999999999999998776422111 101121111 111011111 35688999999999999
Q ss_pred EEEEE
Q 006158 347 KILGD 351 (658)
Q Consensus 347 kVIlD 351 (658)
.++-.
T Consensus 92 ~~~st 96 (327)
T TIGR03586 92 TIFSS 96 (327)
T ss_pred cEEEc
Confidence 98753
No 194
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=35.06 E-value=67 Score=36.10 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.+.|..|+++|++.|.|.. ...++.-...++.. .+.++..+.++.+++.|+. |-+|+.+..-+..
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~R~-~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAINRI-QPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhCCC-CCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 5889999999999999875 22222223334333 5788899999999999997 8899988765543
No 195
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=34.75 E-value=1.2e+02 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=19.4
Q ss_pred CCEEEEEEeCCCCCCC-CCCCCeEEEEcC--CCeEEEE
Q 006158 622 DEKVAMKLGPGHYEPP-SGSQNWSFVTEG--RDYKVWE 656 (658)
Q Consensus 622 ~~~vlvvvnn~~~~~~-~~~~~~~~~~~g--~~~~vw~ 656 (658)
.++++++++..-.+|. ..++.|+++++. ...+|||
T Consensus 14 ~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 14 NQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp S-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred ccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 5677777776555553 335569998886 7899997
No 196
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=34.74 E-value=1.6e+02 Score=31.31 Aligned_cols=100 Identities=22% Similarity=0.205 Sum_probs=64.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCC-----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEecccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD--VGMKILGDVVLNH 356 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-----s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~--~GikVIlD~V~NH 356 (658)
+..+.+.+..+.++|+++|-|-|+.+.. +...|++... +.+-|+++++ -.|-||-|+.+..
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~------------v~~air~iK~~~p~l~vi~DVclc~ 120 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNL------------VCRAIRAIKEAFPELGIITDVALDP 120 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCCh------------HHHHHHHHHHhCCCcEEEEeeeccC
Confidence 8899999999999999999999995332 2233333221 3344444444 4899999999865
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 357 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 357 t~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
...+.+ |+-.. +=.-.|.+..+.+.+...-.. +.|+|-.
T Consensus 121 YT~hGH------------------------------cGil~--------~~~idND~Tl~~L~~~Avs~A-~AGADiV 159 (320)
T cd04823 121 YTSHGH------------------------------DGIVR--------DGGILNDETVEVLCKQALVQA-EAGADIV 159 (320)
T ss_pred CCCCCc------------------------------ceecc--------CCcCcCHHHHHHHHHHHHHHH-HhCCCEE
Confidence 443322 00000 001357777888888777776 7888754
No 197
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=34.51 E-value=62 Score=36.33 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.+.|..|+++|++.|.|..= ..+..-...+.. -.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 151 ~e~l~~lk~~G~~risiGvq-------S~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQ-------DFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCC-------CCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 57899999999999998641 122222223333 25678899999999999997 7799988766544
No 198
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=34.35 E-value=69 Score=34.16 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCEEEEEecc
Q 006158 336 DVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 336 ~LV~~aH~~GikVIlD~V~ 354 (658)
..|++||++|.+|+.=+.+
T Consensus 46 ~widaAHrnGV~vLGTiif 64 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIF 64 (311)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEe
Confidence 4789999999999998888
No 199
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=34.27 E-value=70 Score=34.70 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=46.2
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 359 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~ 359 (658)
.++|+-|+++|++.|.+.- .. .+..-...+.. -.+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 103 ~e~l~~lk~~G~nrisiGv-QS------~~d~vL~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-QS------MNNNILKQLNR-THTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-cc------CCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 4889999999999998753 11 11111222222 24678899999999999997 999999986553
No 200
>PRK13561 putative diguanylate cyclase; Provisional
Probab=34.17 E-value=58 Score=38.21 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=50.7
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCC------CCCcccCCCCCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~------GYd~~Dy~~vDp~~-----Gt~edlk~LV~~aH~~GikVIl 350 (658)
.+...+.+.+..|+++||..-- -=+-...++- ..-+.||-+||..| ....-++.+++.||..||+||.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 4577888999999999997543 1000000111 12367888888544 2345699999999999999999
Q ss_pred Eecccc
Q 006158 351 DVVLNH 356 (658)
Q Consensus 351 D~V~NH 356 (658)
..|=+.
T Consensus 610 egVE~~ 615 (651)
T PRK13561 610 EGVETE 615 (651)
T ss_pred ecCCCH
Confidence 998653
No 201
>PRK09936 hypothetical protein; Provisional
Probab=34.05 E-value=1.2e+02 Score=31.93 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHH-HHHHHHHHHHHcCCEEEEEeccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~e-dlk~LV~~aH~~GikVIlD~V~N 355 (658)
.....+.+..++.+|+++|.+. ..+|- |+.||+.+ -|..++++|++.||+|++=+-++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ-------Wt~yG-------~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ-------WTRYG-------DADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-------eeecc-------CCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 5667788899999999999874 22331 22566644 69999999999999999987664
No 202
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.98 E-value=1.1e+02 Score=31.13 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.0
Q ss_pred HHHhHHHHHHcCCCEEEeCC
Q 006158 287 LKEKATELSSLGFSVIWLPP 306 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~P 306 (658)
+.+.|+.++++||+.|.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 66778899999999999854
No 203
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.71 E-value=4.6e+02 Score=28.25 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=67.7
Q ss_pred HhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCc
Q 006158 289 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368 (658)
Q Consensus 289 ~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~ 368 (658)
+.|+-..+.|++.|-+.= +....+..++.++.|+++|++|..-+..-|...
T Consensus 92 ~dl~~a~~~gvd~iri~~--------------------~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~--------- 142 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT--------------------HCTEADVSEQHIGLARELGMDTVGFLMMSHMAP--------- 142 (337)
T ss_pred HHHHHHHHcCCCEEEEEE--------------------ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCC---------
Confidence 345667788999987531 011134689999999999999877665432210
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE-cccCCCchHHH
Q 006158 369 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 447 (658)
Q Consensus 369 ~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~~ 447 (658)
.+++.+.++... ++|+|.+++ |.+..+.+..+
T Consensus 143 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 143 ----------------------------------------------PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHH
Confidence 257777777776 899999997 88877777666
Q ss_pred HHHHHHh----CCCEEEEcccCC
Q 006158 448 KDYLEAT----EPYFAVGEYWDS 466 (658)
Q Consensus 448 ~~~~~~~----~p~~lvGE~w~~ 466 (658)
.++++++ +|..-+|=+.++
T Consensus 176 ~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 176 RDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCC
Confidence 6555543 455556555554
No 204
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=32.69 E-value=2.3e+02 Score=30.17 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=43.4
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEeccccccC
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD--VGMKILGDVVLNHRCA 359 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~--~GikVIlD~V~NHt~~ 359 (658)
+..+.+.+..+.+||+.+|-|-|+-+.....|-. +.||. |- +.+-|+++++ -.|-||-|+.+.....
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~-----A~~~~-g~---v~~air~iK~~~p~l~vi~DvcLc~YT~ 118 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVILFGIPEHKDEIGSE-----AYDPD-GI---VQRAIRAIKEAVPELVVITDVCLCEYTD 118 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCccc-----ccCCC-Ch---HHHHHHHHHHhCCCcEEEEeeeccCCCC
Confidence 8899999999999999999999994332222211 11111 21 3333333333 3899999999865443
No 205
>PLN02905 beta-amylase
Probab=32.40 E-value=1.2e+02 Score=35.08 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=50.4
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+.+++...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+.+.|+||..=+-|.-||.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs-------------gY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN-------------GYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 578899999999999999997632 2333344455544 578999999999999999999987775
Q ss_pred C
Q 006158 360 H 360 (658)
Q Consensus 360 ~ 360 (658)
.
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 4
No 206
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.06 E-value=29 Score=20.27 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=8.5
Q ss_pred CCCcccCCCC
Q 006158 84 SKNWEIPAEP 93 (658)
Q Consensus 84 ~~~W~~p~~~ 93 (658)
+.+|++||..
T Consensus 2 Sk~WvlPprp 11 (17)
T PF10297_consen 2 SKNWVLPPRP 11 (17)
T ss_pred CcccccCCCC
Confidence 4689999987
No 207
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.06 E-value=90 Score=35.05 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=47.3
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gi-kVIlD~V~NHt~~~ 360 (658)
.++|..|+++|++.|.|..= ..+..-...+.. -.+.++..+.++.+++.|+ .|-+|+.++.-+..
T Consensus 151 ~e~l~~l~~aG~~risiGvq-------S~~~~~L~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQ-------DFDPEVQKAVNR-IQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECCC-------CCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 48899999999999998641 111221223332 2578889999999999999 89999998876644
No 208
>PLN02389 biotin synthase
Probab=30.73 E-value=1.2e+02 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=43.0
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
.+.+..||+.|++.+.+ .++. .+.-|-.+-+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeT------s~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDT------SREYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecC------ChHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 46677888888888755 1222 02234444432 2888999999999999999999999998
No 209
>PRK10060 RNase II stability modulator; Provisional
Probab=30.68 E-value=36 Score=40.22 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=50.7
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCC--------CHHHHHHHHHHHHHcCCEEEE
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~G--------t~edlk~LV~~aH~~GikVIl 350 (658)
.+...+.+.+..|+++||..-. -=+-... ++-.--+.|+-+||..|- ...-++.++..||..||+||.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4577788889999999996533 1111000 111223678888886552 345689999999999999999
Q ss_pred Eecccc
Q 006158 351 DVVLNH 356 (658)
Q Consensus 351 D~V~NH 356 (658)
+.|=+.
T Consensus 617 eGVEt~ 622 (663)
T PRK10060 617 EGVETA 622 (663)
T ss_pred ecCCCH
Confidence 998753
No 210
>PLN00197 beta-amylase; Provisional
Probab=30.41 E-value=1.4e+02 Score=34.17 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=50.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-+++...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+.+.|+||..=+-|.-+|.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs-------------gY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG-------------GYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 456799999999999999997632 3333344555544 478999999999999999999987775
Q ss_pred C
Q 006158 360 H 360 (658)
Q Consensus 360 ~ 360 (658)
.
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 4
No 211
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=30.22 E-value=77 Score=30.24 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 293 ELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 293 YLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
=|+.||..+..+. .|+..++...-..+.+.++++.+++.|++|++|...-
T Consensus 45 ~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 45 ALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 3566788887777 3333443322114778999999999999999999753
No 212
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.16 E-value=4.8e+02 Score=28.09 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=66.8
Q ss_pred HhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCc
Q 006158 289 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368 (658)
Q Consensus 289 ~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~ 368 (658)
+.|+...+.|++.|-+.= + .-..+..++.|+.++++|+.|..-+..-|+..
T Consensus 91 ~dl~~a~~~gvd~iri~~---~-----------------~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~--------- 141 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVAT---H-----------------CTEADVSEQHIGMARELGMDTVGFLMMSHMTP--------- 141 (333)
T ss_pred HHHHHHHHCCCCEEEEEe---c-----------------cchHHHHHHHHHHHHHcCCeEEEEEEcccCCC---------
Confidence 446667788999887521 1 11124688999999999999886665433210
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE-cccCCCchHHH
Q 006158 369 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 447 (658)
Q Consensus 369 ~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~~ 447 (658)
.+++.+.++... ++|+|.+.+ |.+..+.+.-+
T Consensus 142 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 142 ----------------------------------------------PEKLAEQAKLME-SYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHH
Confidence 257777777766 899999988 88877776655
Q ss_pred HHHHHHh----CCCEEEEcccCC
Q 006158 448 KDYLEAT----EPYFAVGEYWDS 466 (658)
Q Consensus 448 ~~~~~~~----~p~~lvGE~w~~ 466 (658)
.++++++ +|+.-+|=+.++
T Consensus 175 ~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 175 RDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHHHHhCCCCceEEEEeCC
Confidence 5555443 444445555444
No 213
>PLN02161 beta-amylase
Probab=30.06 E-value=1.5e+02 Score=33.53 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=49.9
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+.+.+...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+.+.|+||..=+-|.-+|.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs-------------gY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS-------------LYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 477899999999999999997632 3344344555544 478999999999999999999987664
Q ss_pred C
Q 006158 360 H 360 (658)
Q Consensus 360 ~ 360 (658)
.
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 3
No 214
>PRK11059 regulatory protein CsrD; Provisional
Probab=29.98 E-value=64 Score=37.86 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=50.4
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~Gt--------~edlk~LV~~aH~~GikVIl 350 (658)
.++..+...+..|+++|+.... -=+-... .+-..-+.||-++|+.|-. ..-++.+++.||..|++||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 3577888889999999986543 1111111 1122235777787766532 22489999999999999999
Q ss_pred Eeccccc
Q 006158 351 DVVLNHR 357 (658)
Q Consensus 351 D~V~NHt 357 (658)
..|=+..
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9987643
No 215
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.93 E-value=1.1e+02 Score=31.24 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
|+..-++.+++.|++.|-+.-. + .|+++.+++.|+++||+.++=+.++-
T Consensus 92 G~~~fi~~~~~aG~~giiipDl-------------------~---~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL-------------------P---PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC-------------------C---HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5677788889999998887521 1 25899999999999999998777653
No 216
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.58 E-value=6.5e+02 Score=26.01 Aligned_cols=63 Identities=22% Similarity=0.114 Sum_probs=40.1
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.++..+...++||++-|..-|.|+= ....+|....-+.+| |+.+..-.+.-++-||+|.- |++
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e----Rg~~~Y~~~~~n~~d--------l~ai~~lk~~~~lPVivd~S--Hs~ 195 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE----RGVRGYDVETRNMLD--------IMAVPIIQQKTDLPIIVDVS--HST 195 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc----cccCCCCCccccccC--------HHHHHHHHHHhCCCeEECCC--CCC
Confidence 5799999999999999987777652 122445432111222 44444333445799999987 765
No 217
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=29.29 E-value=1.2e+02 Score=32.78 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=45.9
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 359 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~ 359 (658)
.++|+.|+++|||.|.|.. ...+..-...+. +-.+.++..+.++.+++.|+. |-+|++++--+.
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~lg-R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFLG-RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 5889999999999998754 112222222332 234678899999999999996 669999976553
No 218
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=28.82 E-value=93 Score=28.75 Aligned_cols=55 Identities=18% Similarity=0.384 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQ 411 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n 411 (658)
+||+-|.+.|++.|++|++=+.+ .+|.|..|.| -+
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG------------------------------------~~ 70 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTG------------------------------------LS 70 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT--------------------------------------
T ss_pred HHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhC------------------------------------CC
Confidence 49999999999999999987765 2334433322 14
Q ss_pred HHHHHHHHHHHHHHHhhcCc
Q 006158 412 DFVRKDIKEWLCWLRNEIGY 431 (658)
Q Consensus 412 ~~vr~~i~~~l~~w~~~~GI 431 (658)
.+.|+...+-++..++++|+
T Consensus 71 ~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 71 KEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 67788888888888888887
No 219
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=28.72 E-value=99 Score=33.70 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=47.0
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.+.|..|+++|++.|.+..=. .+..-+..+. +-.+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS-------~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQT-------FNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEeccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 478999999999999886521 1222222333 235678999999999999998 6789999876544
No 220
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=28.71 E-value=1e+02 Score=34.79 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=42.6
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt 357 (658)
.+.|+.+++.|++.|.+..=.-+. .-...++... +.++..+.++.+|+.||.|..++++..-
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~-------~~L~~~~K~~-~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQ-------QILKNIKKGL-TVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCH-------HHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 466788889999988865422111 1111222222 5778999999999999999999998643
No 221
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=28.57 E-value=90 Score=34.45 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.4
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.++|..|+++|||.|.|..=. .+..-...++.. -+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 115 ~e~l~~l~~~GvnrislGvQS-------~~d~~L~~l~R~-~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQA-------FQDELLALCGRS-HRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEccc-------CCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 478999999999999986511 112212233222 3677888999999999999 7899999866543
No 222
>PLN02705 beta-amylase
Probab=28.52 E-value=1.5e+02 Score=34.33 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=49.9
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCC---CCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~P---i~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
+-+++...|..||.+||+.|-+-= |.|..+...|+-. ..++|++.+.+.||||..=+-|.-+|.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs-------------gY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS-------------GYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH-------------HHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 468899999999999999997632 2333344455544 578999999999999999999987775
Q ss_pred C
Q 006158 360 H 360 (658)
Q Consensus 360 ~ 360 (658)
.
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 3
No 223
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.39 E-value=1.3e+02 Score=30.02 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
.++-...++.++.+.+.|+++|-+.|..... +..++++|.+.||+||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~----------------------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPDS----------------------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTTT----------------------THHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHHH----------------------HHHHHHHHhhcCceEEE
Confidence 5678889999999999999999999876433 56888999999999998
No 224
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=28.28 E-value=53 Score=36.41 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHcCCCEEEeCCCCCCCC----------CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 293 ELSSLGFSVIWLPPPTESVS----------PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 293 YLk~LGv~~I~L~Pi~~~~s----------~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
.-++.|+...|+..- +... +.+=...-+..+-...|+..+++++++.||++|..|++|.+
T Consensus 131 ~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 131 LAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 334569988877643 3220 00111122334456789999999999999999999999996
No 225
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=28.18 E-value=1.1e+02 Score=32.11 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcccCCCc------hHHHHHHHHHhCC
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW------GGYVKDYLEATEP 456 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~~~------~~~~~~~~~~~~p 456 (658)
+++..|+.+++.+..+++++|+||+-||--.--+ ..|++++.++.++
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~ 136 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA 136 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh
Confidence 5788899898888877789999999999843211 1355555555544
No 226
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.91 E-value=1.7e+02 Score=29.70 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.0
Q ss_pred HHHhHHHHHHcCCCEEEeC
Q 006158 287 LKEKATELSSLGFSVIWLP 305 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~ 305 (658)
+.+.++-++++|++.|.|.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 6667777788888888885
No 227
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.78 E-value=3.7e+02 Score=32.45 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDV-GMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~-GikVIlD~V~NHt~~~~ 361 (658)
.+.+|++++++|+. |-+|++-+ +|.|...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 46899999999999 69998887 8888654
No 228
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.77 E-value=67 Score=30.50 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=39.9
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
-||.-..+..+-|+++||.+--- | .|-|+ |++.+.+++++|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~--V---vSAHR--------------TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVR--V---VSAHR--------------TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEE--E---EeccC--------------CHHHHHHHHHHHHHCCCeEEEec
Confidence 46777888888889999865220 0 14444 88999999999999999999865
No 229
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.71 E-value=1.6e+02 Score=30.13 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=38.0
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
++...++++.++|++.|.|..--.. .|... .-+.+++++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~----~~~~~--------~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPR----SWKGV--------RLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCC----CCCCC--------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 4668899999999999999543321 12111 23566788888888899999764
No 230
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.67 E-value=2.6e+02 Score=28.00 Aligned_cols=38 Identities=26% Similarity=0.118 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCccEEEE-cccCCCchHHHHHHHHHh
Q 006158 416 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 454 (658)
Q Consensus 416 ~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~~~~~~~~~ 454 (658)
+++.+.++... ++|+|.+++ |.+..+.+..+.++++.+
T Consensus 137 ~~~~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 137 EELLELAEALA-EAGADIIYLADTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEEETTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCeEEEeeCccCCcCHHHHHHHHHHH
Confidence 57777777776 789999998 777777776666655544
No 231
>PRK12928 lipoyl synthase; Provisional
Probab=27.66 E-value=2.3e+02 Score=29.84 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
|-+...+.+.|+.|+++|++.|.+.+...... ..+-+ .+|=++++|+.+-+.|.+.|.+-|.-..+=
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~-~~~~v-------~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSL-AHLPV-------QRYWTPEEFEALGQIARELGFSHVRSGPLV 281 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCc-cCCce-------eeccCHHHHHHHHHHHHHcCCceeEecCcc
Confidence 56899999999999999999999888654332 22222 245678999999999999999877665553
No 232
>PRK08114 cystathionine beta-lyase; Provisional
Probab=27.55 E-value=71 Score=35.28 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC--CEEEEEecc
Q 006158 292 TELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVVL 354 (658)
Q Consensus 292 dYLk~LGv~~I~L~Pi~~~~----s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~G--ikVIlD~V~ 354 (658)
..++..||+..++.|.-... -...-...=...+-...|...|++++++.||++| +.||+|-++
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 46788999999987631110 0011111112233344677789999999999985 999999887
No 233
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=27.51 E-value=1e+02 Score=36.36 Aligned_cols=58 Identities=5% Similarity=0.068 Sum_probs=42.8
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
..+.+.|.-+|.+|+|+|-+..+.-+. .---|+ |+ .-|.. +++.|++.|+.|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fd----------f~-~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFD----------FT-WLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccC----------cc-cchHH-HHHHHHhcCceEEEecCC
Confidence 678899999999999999998876554 111122 22 23444 899999999999996544
No 234
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.28 E-value=1.8e+02 Score=29.71 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.+..+-++.+++.|+++|-+. |-.+=+.++++++++.+|++||++++=+-++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456777888899999999882 1111123578999999999999999976553
No 235
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=27.18 E-value=49 Score=33.51 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
........++|.+.|=++.-+.......++- -.+++++++++||+.||+||+...+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~-----------~~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDE-----------VIEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHH-----------HHHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHH-----------HHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5667788899999998876552111000000 14689999999999999999997664
No 236
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=27.08 E-value=1e+02 Score=33.57 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.++|+.|+++|||.|.|..=. .+..-...+... -+.++..+-++.+++.|+. |-+|+.++.-+.+
T Consensus 103 ~~~l~~l~~~G~nrislGvQS-------~~~~~L~~l~R~-~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQT-------FDDPLLKLLGRT-HSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCEEEEcccc-------CCHHHHHHcCCC-CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 578999999999999886411 111112233322 2577788889999999996 8899999866543
No 237
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=27.02 E-value=47 Score=21.07 Aligned_cols=17 Identities=47% Similarity=0.534 Sum_probs=14.8
Q ss_pred HHHHHHhHHHHHHcCCC
Q 006158 284 YMELKEKATELSSLGFS 300 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~ 300 (658)
-.-+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 56788999999999985
No 238
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.85 E-value=59 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.0
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPE 314 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~ 314 (658)
+.+-++.+...|++.|+|.|+|-..+.|
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G~H 71 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAGDH 71 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheeccc
Confidence 5666777899999999999999988765
No 239
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=26.82 E-value=3.1e+02 Score=29.37 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEeccccccCCC
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD--VGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~--~GikVIlD~V~NHt~~~~ 361 (658)
+..+.+.+..+.++|+++|-|-|+-+.....|- .+.||. |- +.+-|+++++ -.|-||-|+.+.....++
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs-----~A~~~~-g~---v~rair~iK~~~p~l~vi~DVcLc~YT~hG 128 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVALFGVPELKDEDGS-----EAYNPD-GL---VQRAIRAIKKAFPELGVITDVCLDEYTSHG 128 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccc-----cccCCC-CH---HHHHHHHHHHhCCCcEEEEeeeccCCCCCC
Confidence 889999999999999999999999222221221 112221 11 3333333333 589999999986544332
Q ss_pred CCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEE
Q 006158 362 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 434 (658)
Q Consensus 362 ~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGf 434 (658)
+ .|-. . .+ .-.|.+.-+.+.+...-.. +.|+|-.
T Consensus 129 H--cGil---------------------~-----------~g----~idND~Tl~~L~~~Al~~A-~AGaDiV 162 (323)
T PRK09283 129 H--CGIL---------------------E-----------DG----YVDNDETLELLAKQALSQA-EAGADIV 162 (323)
T ss_pred c--eecc---------------------c-----------CC----cCcCHHHHHHHHHHHHHHH-HhCCCEE
Confidence 2 0100 0 00 1147777888888777666 7888754
No 240
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.78 E-value=1.8e+02 Score=29.99 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=37.9
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV-GMKILG 350 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~-GikVIl 350 (658)
.+.+.|+.++++|++.|.|..-.. +++. .+.. +.+++++|.+.+.++ |+.+.+
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~----~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNP----RSWL-------SRPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCC----CccC-------CCCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 378899999999999999875211 1111 1112 568899999999998 777765
No 241
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=26.78 E-value=18 Score=36.90 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=32.7
Q ss_pred eEEEEe-cCCCCCe-------EEEeeeeeCCCCCcccCCCCC-CCCccccccccccccccc
Q 006158 61 TLLNLE-TDLTGDV-------VVHWGVCRDDSKNWEIPAEPY-PPETIVFKNKALRTLLQP 112 (658)
Q Consensus 61 ~~~~~~-~~~~~~~-------~lhWg~~~~~~~~W~~p~~~~-p~~~~~~~~~a~~t~~~~ 112 (658)
+.+++. +++|+.+ +|||.||+.. +=..|-++. |.++..=.+.|+|+--+-
T Consensus 93 isgqLdLs~~~e~I~~PildGLLHWaVcpsa--~A~Dpfp~~~~~~~lSPqrlaLEaLcKL 151 (257)
T PF12031_consen 93 ISGQLDLSDYPESIARPILDGLLHWAVCPSA--EAQDPFPTAGPHSPLSPQRLALEALCKL 151 (257)
T ss_pred eeeeeecccCchHHHHHHHHHHHHHHhccch--hccCCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 344444 7788866 7999999974 334454444 666555557799886543
No 242
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.68 E-value=2.7e+02 Score=28.73 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCccEEEE-cccCCCchHHHHHHHHHh
Q 006158 416 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 454 (658)
Q Consensus 416 ~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~~~~~~~~~ 454 (658)
+++.+.++... ++|+|.+++ |.+..+.+.-+.++++.+
T Consensus 143 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 143 DFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 57777777777 799999998 777777666566655554
No 243
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=26.64 E-value=3.3e+02 Score=29.06 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCC------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEEeccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESV------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD--VGMKILGDVVLN 355 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~------s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~--~GikVIlD~V~N 355 (658)
+..+.+.+..+.++||++|-|-|+-+.. +...|++.. -+.+-|+++++ -.|-||-|+.+.
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g------------~v~~air~iK~~~pdl~vi~Dvclc 117 (320)
T cd04824 50 VNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDG------------PVIQAIKLIREEFPELLIACDVCLC 117 (320)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCC------------hHHHHHHHHHHhCCCcEEEEeeecc
Confidence 8899999999999999999999995321 112233321 13444444444 389999999986
Q ss_pred cccC
Q 006158 356 HRCA 359 (658)
Q Consensus 356 Ht~~ 359 (658)
....
T Consensus 118 ~YT~ 121 (320)
T cd04824 118 EYTS 121 (320)
T ss_pred CCCC
Confidence 5443
No 244
>PRK05967 cystathionine beta-lyase; Provisional
Probab=25.88 E-value=86 Score=34.64 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.++..+++++++.||++|+-||.|-++.
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 6789999999999999999999999985
No 245
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=25.81 E-value=2.6e+02 Score=29.66 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
|=+-+.+++.|+.|+++|++.|-+.+-+... -..+.+.. |=++++|+.+-+.|-+.|.+-+.-..+=
T Consensus 218 GETeee~~etl~~Lrelg~d~v~igqYl~p~-~~~~~v~~-------~~~p~~f~~~~~~a~~~gf~~v~~~p~v 284 (302)
T TIGR00510 218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPS-RRHLPVKR-------YVSPEEFDYYRSVALEMGFLHAACGPFV 284 (302)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeecccCCC-CCCCcccc-------CCCHHHHHHHHHHHHHcCChheEecccc
Confidence 5689999999999999999999998877653 24444444 4467899999999999998876655543
No 246
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=25.60 E-value=4.6e+02 Score=27.70 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=57.0
Q ss_pred HHHHHcCCCEEEeCCCCCCC---CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCc
Q 006158 292 TELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368 (658)
Q Consensus 292 dYLk~LGv~~I~L~Pi~~~~---s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~ 368 (658)
++.++-|+++|-|.=+.... -.|+ .. ..+.+...+..-|++++++|.+||+=+ |... +.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~----g~----~~~~~~~~~~~~i~~lk~~G~kViiS~-----GG~~----g~- 80 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG----GS----YPLDQGGWIKSDIAALRAAGGDVIVSF-----GGAS----GT- 80 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC----CC----CCcccchhHHHHHHHHHHcCCeEEEEe-----cCCC----CC-
Confidence 57778899999886333221 1121 00 111245678888999999999999833 1100 00
Q ss_pred ccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEEcccCC
Q 006158 369 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441 (658)
Q Consensus 369 ~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a~~ 441 (658)
.+. .+..-++.+.+.+...++.||+||+-||--..
T Consensus 81 -------------------~~~-------------------~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~ 115 (294)
T cd06543 81 -------------------PLA-------------------TSCTSADQLAAAYQKVIDAYGLTHLDFDIEGG 115 (294)
T ss_pred -------------------ccc-------------------cCcccHHHHHHHHHHHHHHhCCCeEEEeccCC
Confidence 000 02223566777666667799999999998554
No 247
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.56 E-value=1.9e+02 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH---cCCEEEEEeccccc
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD---VGMKILGDVVLNHR 357 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~---~GikVIlD~V~NHt 357 (658)
.+..++...+.+++|+++|-+.|.+... +. ++.+.+.+.++++.+ .++-||+...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~------~~---------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSL------KE---------GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHH------hC---------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 7889999999999999999998755211 10 134444444444444 59999998877655
No 248
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.51 E-value=1.4e+02 Score=30.07 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCC
Q 006158 285 MELKEKATELSSLGFSVIWLPPPT 308 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~ 308 (658)
--+...+..|++||.+.|-..|+-
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC
Confidence 346788999999999999998864
No 249
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.10 E-value=1.6e+02 Score=32.31 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=57.5
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC----CCCCCCcccCCCC---------------------------CCC--
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNL---------------------------SSR-- 327 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~----s~~GYd~~Dy~~v---------------------------Dp~-- 327 (658)
+|=-++|.-.++-|+.-|-|.+.--|=|+.- .++|--++ ||++ +|.
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NP 211 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNP 211 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCC
Confidence 4778999999999999999998877766543 23443322 1111 111
Q ss_pred CC---CHHHHHHHHHHHHHcCCEEEEEeccccccC
Q 006158 328 YG---NIDELKDVVNKFHDVGMKILGDVVLNHRCA 359 (658)
Q Consensus 328 ~G---t~edlk~LV~~aH~~GikVIlD~V~NHt~~ 359 (658)
-| +.+-|+++++-||+.||-||-|=|+.|+.-
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf 246 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF 246 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEehhhcceeec
Confidence 12 467899999999999999999999999873
No 250
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=25.04 E-value=84 Score=28.07 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=18.5
Q ss_pred eeeeEEEEEcC---CccccccCCCccee
Q 006158 129 FAGFLFVLKLN---ENTWLKCMENDFYI 153 (658)
Q Consensus 129 ~~~~~Fvl~~~---~~~W~k~~G~~f~v 153 (658)
...+.|+|+-. +..|-||+|.||.|
T Consensus 85 ~~~lef~I~Y~~~g~eyWDNN~g~NY~v 112 (113)
T PF03370_consen 85 GGRLEFCIRYEVNGQEYWDNNNGKNYQV 112 (113)
T ss_dssp TS-SEEEEEEEETTEEEEESTTTT-EEE
T ss_pred CceEEEEEEEEeCCCEEecCCCccceEE
Confidence 56688888642 68999999999976
No 251
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.00 E-value=3.2e+02 Score=29.41 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=43.5
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCC-CCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~v-Dp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
+..+......++=|+..|..-...-++...++ +.. ..+ ++ .-.+.|++|++++|+.|-++++-+ +|.|..
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~-~~~~~d--~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKD-LGIWDD--EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeEECccccCC-CCc-eecCCH--HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 33444555556678988887765554432221 110 011 11 125689999999999999999887 777754
No 252
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=24.52 E-value=4e+02 Score=27.57 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=61.6
Q ss_pred HHHHHHcCCCEEEe-CCCCCCC--CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCC
Q 006158 291 ATELSSLGFSVIWL-PPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 367 (658)
Q Consensus 291 LdYLk~LGv~~I~L-~Pi~~~~--s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~ 367 (658)
++...+.|++.|-+ .|+-+.. .+.+-.... ..+.++++|+.|+++|++|.+.+.- +..
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e---------~~~~~~~~i~~a~~~G~~v~~~~ed--a~r-------- 137 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITE---------IIESAVEVIEFVKSKGIEVRFSSED--SFR-------- 137 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHH---------HHHHHHHHHHHHHHCCCeEEEEEEe--eCC--------
Confidence 55566789998776 3443322 223322211 1456888899999999998776631 100
Q ss_pred cccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE-cccCCCchHH
Q 006158 368 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 446 (658)
Q Consensus 368 ~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~ 446 (658)
.. .+++.+.++... +.|+|.+++ |.+..+.+.-
T Consensus 138 ------------------------------------------~~---~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~ 171 (262)
T cd07948 138 ------------------------------------------SD---LVDLLRVYRAVD-KLGVNRVGIADTVGIATPRQ 171 (262)
T ss_pred ------------------------------------------CC---HHHHHHHHHHHH-HcCCCEEEECCcCCCCCHHH
Confidence 00 245666666665 789998888 7777776666
Q ss_pred HHHHHHHhC
Q 006158 447 VKDYLEATE 455 (658)
Q Consensus 447 ~~~~~~~~~ 455 (658)
+.++++.++
T Consensus 172 v~~~~~~~~ 180 (262)
T cd07948 172 VYELVRTLR 180 (262)
T ss_pred HHHHHHHHH
Confidence 666666553
No 253
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.49 E-value=2.6e+02 Score=29.37 Aligned_cols=53 Identities=21% Similarity=0.284 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccccccCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006158 332 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQ 411 (658)
Q Consensus 332 edlk~LV~~aH~~GikVIlD~V~NHt~~~~~~~~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n 411 (658)
+++.+-|..++++||+|+-=++++=-+
T Consensus 168 ~~y~dav~r~rkrgIkvc~HiI~GLPg----------------------------------------------------- 194 (312)
T COG1242 168 ACYVDAVKRLRKRGIKVCTHLINGLPG----------------------------------------------------- 194 (312)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeeCCCC-----------------------------------------------------
Confidence 358889999999999998666553111
Q ss_pred HHHHHHHHHHHHHHHhhcCccEEEEccc
Q 006158 412 DFVRKDIKEWLCWLRNEIGYDGWRLDFV 439 (658)
Q Consensus 412 ~~vr~~i~~~l~~w~~~~GIDGfRlD~a 439 (658)
+-++.+++.++... ..||||..+---
T Consensus 195 -E~~~~mleTak~v~-~~~v~GIKlH~L 220 (312)
T COG1242 195 -ETRDEMLETAKIVA-ELGVDGIKLHPL 220 (312)
T ss_pred -CCHHHHHHHHHHHH-hcCCceEEEEEE
Confidence 11678888888776 899999998654
No 254
>PRK09028 cystathionine beta-lyase; Provisional
Probab=24.28 E-value=94 Score=34.28 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.|...+++++++.||++|+.||+|-++-
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999999884
No 255
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=23.84 E-value=79 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESV 311 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~ 311 (658)
+.+.|+.|++.|++.|.+.|+|...
T Consensus 47 i~~~l~~l~~~g~~~vvvvPl~~~~ 71 (101)
T cd03409 47 TEEAIRELAEEGYQRVVIVPLAPVS 71 (101)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcccc
Confidence 6778889999999999999999874
No 256
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.71 E-value=1.6e+02 Score=30.26 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
+.+.++-++++|+++|.|.+-- .+.+ +.+.--+.++++++.+.+.+.||+|..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~----~~~~-------~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDE----SDER-------LARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCc----cccc-------hhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 6788999999999999995321 1111 111112567899999999999999864
No 257
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.58 E-value=2.1e+02 Score=27.30 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=37.1
Q ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 292 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 292 dYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
..|..+|+++..+...... .-...|-.-+=..-|...++.++++.||++|++||.
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3578899999988654311 111222222224457788999999999999999975
No 258
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.43 E-value=2.1e+02 Score=30.77 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=48.1
Q ss_pred CCCcHHHHHHhHHHHHHcCCCEEEeCCCCCCC-----CCC-CCCcccCCCCCCC------CC-CHHHHHHHHHHHHHcCC
Q 006158 280 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPE-GYMPRDLYNLSSR------YG-NIDELKDVVNKFHDVGM 346 (658)
Q Consensus 280 ~GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~-----s~~-GYd~~Dy~~vDp~------~G-t~edlk~LV~~aH~~Gi 346 (658)
|.||++-..+.++-.++.|+++|=+.-...-. ..- .|...+.+.-.+. +. +.++++.|.+.|++.||
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi 90 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGI 90 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999988632211 111 2322221110111 11 35789999999999999
Q ss_pred EEEEE
Q 006158 347 KILGD 351 (658)
Q Consensus 347 kVIlD 351 (658)
.++-.
T Consensus 91 ~~~st 95 (329)
T TIGR03569 91 EFLST 95 (329)
T ss_pred cEEEE
Confidence 88743
No 259
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.39 E-value=9.8e+02 Score=28.48 Aligned_cols=127 Identities=10% Similarity=0.023 Sum_probs=68.7
Q ss_pred HHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHH-HHHHHHHHHHc-CCEEEEEeccccccCCCCCC
Q 006158 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFHDV-GMKILGDVVLNHRCAHYQNQ 364 (658)
Q Consensus 287 i~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~ed-lk~LV~~aH~~-GikVIlD~V~NHt~~~~~~~ 364 (658)
+-.-|+.|++||+|+|||..+.+..++.--+. .|=.+.++==.+| |-+.+=+++.| |++|..=+..--.. -+
T Consensus 336 l~~l~~ri~~~~~~~VyLqafadp~gdg~~~~--lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~--l~-- 409 (672)
T PRK14581 336 LDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQ--VYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFD--MD-- 409 (672)
T ss_pred HHHHHHHHHhcCCCEEEEEeeeCCCCCCceee--EEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhcc--CC--
Confidence 34446789999999999999987764411111 1222333332333 56665666655 99997655432110 00
Q ss_pred CCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCccEEEE
Q 006158 365 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 436 (658)
Q Consensus 365 ~g~~~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdln~~n~~vr~~i~~~l~~w~~~~GIDGfRl 436 (658)
.. .+.. ..|.. .+. .....-...+.|..-+|++|+.|.++-.-+...-.|||+=|
T Consensus 410 ~~--~~~~--~~~~~------------~~~-~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilf 464 (672)
T PRK14581 410 PS--LPRI--TRIDP------------KTG-KTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIY 464 (672)
T ss_pred cc--cchh--hhccc------------ccC-ccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEe
Confidence 00 0000 00100 000 00000012334666789999999999999985458999877
No 260
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=23.34 E-value=1e+02 Score=28.90 Aligned_cols=64 Identities=11% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 358 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~ 358 (658)
.+.++.|+++|+..|+++-=... ...+..+...-++.++..+.++.++++|+.|...+++..-.
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~ 151 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDSGD-------EEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGD 151 (204)
T ss_pred HHHHHHHHhCCCceEEEEcccCC-------HHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCC
Confidence 56678888889999987642211 22222332345678899999999999999999999886443
No 261
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=23.31 E-value=1.5e+02 Score=32.17 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~Gik-VIlD~V~NHt~~~ 360 (658)
.++|..|+++|++.|.|.- ++.+ ..-...++ +-.+.++..+-++.+++.|+. |-+|+.++.-+..
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~-----d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQ-----NSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCC-----HHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 3789999999999998865 2221 11122222 233688899999999999997 7799999865543
No 262
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=23.30 E-value=77 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 326 SRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 326 p~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
.++-+..|++.+-+...++||+|++|=
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Idk 42 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKIDK 42 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEECC
Confidence 456678899999999999999999983
No 263
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.17 E-value=2.8e+02 Score=30.23 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=42.3
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
+...+++....|+++|+..+.=...-+..+.++|.. + +.+.++.|-+.|++.||.++-++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g-----~-----~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQG-----L-----GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccC-----C-----CHHHHHHHHHHHHHcCCCEEEee
Confidence 356677777789999998777433332223333322 2 25899999999999999999876
No 264
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.15 E-value=3.4e+02 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=41.1
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHH---HHHHHHHHHHc-CCEEEEEe
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE---LKDVVNKFHDV-GMKILGDV 352 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~ed---lk~LV~~aH~~-GikVIlD~ 352 (658)
+...+.++.....+-|.+.|=+......+ |... ....+| ++.+|++++++ ++.|.+|-
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st~p---~~~~---------i~~~~E~~rl~~~v~~~~~~~~~plsiDT 82 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGESTRP---GADR---------VSPEEELNRVVPVIKALRDQPDVPISVDT 82 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCC---CCCC---------CCHHHHHHHHHHHHHHHHhcCCCeEEEeC
Confidence 46788888888899999999996433222 1111 112335 88888999988 99998885
No 265
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=22.97 E-value=1.6e+02 Score=32.17 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCC---------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESV---------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~---------s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
..+..-+..++..|+..+++.+--... -..+....-...+....|...+++++++.||++|+.|++|.+-
T Consensus 103 ~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 103 KAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 334444445666788777764321100 0011122222344455788889999999999999999999984
No 266
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=22.72 E-value=96 Score=33.62 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
.|+..+++++++.||++|+.||.|-++
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 578899999999999999999999887
No 267
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=22.66 E-value=92 Score=32.17 Aligned_cols=22 Identities=32% Similarity=0.740 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEe
Q 006158 331 IDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~ 352 (658)
.+++++|++.||+.||.++..+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5679999999999999999987
No 268
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.49 E-value=1.1e+02 Score=33.52 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.|...+++++++.||++|+.||.|-++-
T Consensus 148 ~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 148 TFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 4888999999999999999999999874
No 269
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=22.41 E-value=3.2e+02 Score=29.39 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=39.1
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
.+.++.|++.|++.|.++= .|.++..+..+-..-|+-+...+.++.+++.|++|.+-+|++
T Consensus 95 ~e~~~~L~~~g~~~v~iSl-------dg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~ 155 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSF-------QGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH 155 (358)
T ss_pred HHHHHHHHhCCCCEEEEeC-------cCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 3567888899999988742 344433232332223445556667788889999987766663
No 270
>PF03714 PUD: Bacterial pullanase-associated domain; InterPro: IPR005323 Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2J43_A 2J44_A 2YA1_A 2FHC_A 2FHB_A 2FHF_A 2J73_B 2J72_A 2J71_A.
Probab=22.39 E-value=2.8e+02 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=30.6
Q ss_pred CceEEEEecCCceeeeEEEEEcCCccccccCCCcceecCCC
Q 006158 117 KGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPLTS 157 (658)
Q Consensus 117 ~~~~~~~~~~~~~~~~~Fvl~~~~~~W~k~~G~~f~v~~~~ 157 (658)
-+...+|++......+.|+++.. +-|..+.|+.|++..
T Consensus 45 ~G~~~~i~~~~~~~~igfIv~~~---~~kd~~~D~~i~~~~ 82 (103)
T PF03714_consen 45 FGAYADIPLKGGASKIGFIVRKG---DWKDQGGDRFIDLTS 82 (103)
T ss_dssp TEEEEEEEBSTSSSEEEEEEEET---TEECSSSEEEEETTT
T ss_pred CceEEEEEeCCCCCEEEEEEEcC---CCCCCCCCEEEEecc
Confidence 45688899988888899999665 566688899999855
No 271
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.27 E-value=1.7e+02 Score=25.93 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=35.4
Q ss_pred HHHHHHcC-CCEEEeCCCCCCC-CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 291 ATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 291 LdYLk~LG-v~~I~L~Pi~~~~-s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
-.+|..+| +.+....| .+.. ....-...|..-+=..=|...+..+.++.|+++|.+||.
T Consensus 18 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 18 KYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 34667776 77766552 1111 111122233222224557788999999999999999885
No 272
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.18 E-value=1.7e+02 Score=29.14 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHHHhHHHHHHcCCC-EEEeCCCCCCCCCCC----CCcccCCCCCCCCCCH----------HHHHHHHHHHHHcCCEEE
Q 006158 285 MELKEKATELSSLGFS-VIWLPPPTESVSPEG----YMPRDLYNLSSRYGNI----------DELKDVVNKFHDVGMKIL 349 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~-~I~L~Pi~~~~s~~G----Yd~~Dy~~vDp~~Gt~----------edlk~LV~~aH~~GikVI 349 (658)
..+.+.|.+|+++|+. .|-|.|=++-..--. =|-.-...++|-||+- ++++++..+.+ .++.|.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~-~~~~I~ 170 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENG-LDFEIE 170 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHT-CGSEEE
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcC-CceEEE
Confidence 3466788999999999 689999765442222 2444557889999872 34555554443 679999
Q ss_pred EEeccc
Q 006158 350 GDVVLN 355 (658)
Q Consensus 350 lD~V~N 355 (658)
+|+=+|
T Consensus 171 vDGGI~ 176 (201)
T PF00834_consen 171 VDGGIN 176 (201)
T ss_dssp EESSES
T ss_pred EECCCC
Confidence 998665
No 273
>PLN02721 threonine aldolase
Probab=22.02 E-value=1.6e+02 Score=31.02 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=38.1
Q ss_pred cHHHHHHhHHHHHHc---CCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 283 WYMELKEKATELSSL---GFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 283 dl~Gi~~kLdYLk~L---Gv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
|+..+.+.+.....- ....|+|.|++.++...-+ +.+++++|++.||++|+.||+|-..
T Consensus 119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~-------------~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCL-------------SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccc-------------cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 566666666432111 2346888776544321111 2457999999999999999999864
No 274
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=21.98 E-value=91 Score=33.10 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEcc
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~ 438 (658)
+++..|+.+++.+..+++++|+||+-||.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 57888999999888888899999999993
No 275
>PRK07050 cystathionine beta-lyase; Provisional
Probab=21.88 E-value=1.1e+02 Score=33.61 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
.|...+++++++.||++|+.||+|-.+..
T Consensus 163 ~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 163 TMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 47889999999999999999999999764
No 276
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.75 E-value=2.9e+02 Score=28.48 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=39.8
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NH 356 (658)
|+..-+..+++.|++.|-+... ..++..+++++|+++||+.++=+.++.
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 7888899999999999887621 237889999999999999997666653
No 277
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=21.73 E-value=2.3e+02 Score=25.06 Aligned_cols=67 Identities=19% Similarity=0.060 Sum_probs=40.2
Q ss_pred CCcHHHHHHhHHHHHH-cCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 281 GRWYMELKEKATELSS-LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~-LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
|+........-.++.. +|+..+...+..... .-...|-.-+=+.=|...+..+.++.|+++|++||.
T Consensus 8 G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 8 GGSGIGGDLLESLLLDEAKIPVYVVKDYTLPA---FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEecCccCcC---CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4444433333345566 489888876522110 111222222235668888999999999999999974
No 278
>PLN02808 alpha-galactosidase
Probab=21.71 E-value=1.6e+02 Score=32.54 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=34.9
Q ss_pred HHHHHHhHHH-----HHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCC-CCCCHHHHHHHHHHHHHcCCEE
Q 006158 284 YMELKEKATE-----LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKI 348 (658)
Q Consensus 284 l~Gi~~kLdY-----Lk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp-~~Gt~edlk~LV~~aH~~GikV 348 (658)
-+-|.+..+. |+++|++.|.|=-=+....- +......+|| +|- .-|+.|++.+|++|||.
T Consensus 48 e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~r---d~~G~~~~d~~rFP--~G~~~lad~iH~~Glkf 113 (386)
T PLN02808 48 ETLIKQTADAMVSSGLAALGYKYINLDDCWAELKR---DSQGNLVPKASTFP--SGIKALADYVHSKGLKL 113 (386)
T ss_pred HHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCc---CCCCCEeeChhhcC--ccHHHHHHHHHHCCCce
Confidence 3445555554 79999999988332211100 0111123332 332 35999999999999986
No 279
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=21.57 E-value=1e+02 Score=32.81 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCccEEEEccc
Q 006158 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 439 (658)
Q Consensus 410 ~n~~vr~~i~~~l~~w~~~~GIDGfRlD~a 439 (658)
.++..|+.+++.+..|++++|+||+-||--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 478889989998888888999999999963
No 280
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=21.53 E-value=3.7e+02 Score=28.36 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=40.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 351 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD 351 (658)
+...+.+.+..+++.|++.|=+.--........+ ..-..=+.+.|++++++||++|+.|.+=
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~-------~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDP-------PPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCC-------CcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 4677888888888889999865531111111100 1111225789999999999999998753
No 281
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.47 E-value=92 Score=25.41 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=38.2
Q ss_pred HHHHHhHH-HHHHc-CCCEEEeCCCCCCCCC--CCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 285 MELKEKAT-ELSSL-GFSVIWLPPPTESVSP--EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 285 ~Gi~~kLd-YLk~L-Gv~~I~L~Pi~~~~s~--~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
..+.+.+. .|..+ |+++..+.+.-..... ...+..|..-+=..-|...+..++++.|+++|.++|.
T Consensus 10 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 10 GAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34444444 44677 8888776552211110 1112223222224446677899999999999999874
No 282
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.28 E-value=7.7e+02 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccccCCC
Q 006158 331 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361 (658)
Q Consensus 331 ~edlk~LV~~aH~~GikVIlD~V~NHt~~~~ 361 (658)
.+.|++|++++|++|-++++-+ +|.|...
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL--~H~G~~~ 104 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQL--WHVGRVS 104 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEc--ccCccCC
Confidence 4689999999999999999865 6887653
No 283
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.92 E-value=1.8e+02 Score=29.47 Aligned_cols=50 Identities=28% Similarity=0.474 Sum_probs=34.5
Q ss_pred HHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 006158 285 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 351 (658)
Q Consensus 285 ~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD 351 (658)
..+.+.|+.++++|++.|.|.| +++-+.++ .++++|.+.++++|+.+..=
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~-------~~~~~~~~----------~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP-------GDLFPADY----------KELAELKELLADYGLEITSL 64 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC-------cccCCchh----------hhHHHHHHHHHHcCcEEEee
Confidence 4477899999999999999998 22222221 11666667777778877763
No 284
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.85 E-value=1.9e+02 Score=31.81 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=46.1
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
.++|..|+++|||-|.|..=. .+..-...+. +.-+.++..+.++.|++.++.|-+|++++.-+..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS-------~~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQS-------LKEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 489999999999999986511 1111112222 2335677888889999999999999999876654
No 285
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.78 E-value=1.6e+02 Score=32.26 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=45.0
Q ss_pred HhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccccCC
Q 006158 289 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 360 (658)
Q Consensus 289 ~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~NHt~~~ 360 (658)
++|..|+++|||.|.|.-=.- +..-...++. --+.++..+.++.+++.++.|-+|+.++--+..
T Consensus 105 e~L~~l~~~GvnrislGvQS~-------~d~vL~~l~R-~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQAL-------NDADLRFLGR-LHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCEEEEecccC-------CHHHHHHcCC-CCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 889999999999999864111 1111122222 236778888899999999999999999865543
No 286
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.77 E-value=44 Score=32.29 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 006158 291 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 291 LdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIl 350 (658)
|..++++|++.|.|.+.......-. .++++++.+.+.+.||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~---------------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK---------------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH---------------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccc---------------hHHHHHHHHHHHHcCCeEEE
No 287
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.76 E-value=48 Score=32.08 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 329 GNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 329 Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
=+++++++||+.||++|+++-|-.-+
T Consensus 164 m~~e~l~eFvd~Ah~hGL~~AlAGs~ 189 (235)
T COG1891 164 MDEEELEEFVDLAHEHGLEVALAGSL 189 (235)
T ss_pred hcHHHHHHHHHHHHHcchHHHhcccc
Confidence 35789999999999999998775543
No 288
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=20.71 E-value=1.8e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=44.5
Q ss_pred HHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcC-CEEEEEecccccc
Q 006158 288 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRC 358 (658)
Q Consensus 288 ~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~G-ikVIlD~V~NHt~ 358 (658)
.+.++.|+++|++.|.++.=.-... -|+ .+.+. ++.+++.+.++.+++.| +.|...+++++.+
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~~~~~--~~~-----~~~~~-~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~ 163 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQSGSDE--VLK-----AINRG-HTVEDVLEAVEKLREAGPIKVSTDLIVGLPG 163 (216)
T ss_pred HHHHHHHHHcCCCeEEEecccCCHH--HHH-----HhcCC-CCHHHHHHHHHHHHHhCCcceEEeEEecCCC
Confidence 5678899999999888866432221 111 12221 35689999999999999 8998888887653
No 289
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=20.63 E-value=76 Score=34.80 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=25.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 323 NLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 323 ~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
.+...-|...+++++++.||++|+.|++|.+
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 3444557777899999999999999999975
No 290
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.60 E-value=1.9e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 006158 291 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352 (658)
Q Consensus 291 LdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~ 352 (658)
++.|+++|++.|-+ |-.+..- ..+++.+++++|++.||.+|+++
T Consensus 78 ~~~l~~~G~~~vii-~~ser~~-----------------~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGTLI-NHSERRL-----------------TLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEEEE-ecccccc-----------------CHHHHHHHHHHHHHCCCeEEEEc
Confidence 88999999999954 3222111 13458899999999999999743
No 291
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.58 E-value=67 Score=33.57 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecc
Q 006158 328 YGNIDELKDVVNKFHDVGMKILGDVVL 354 (658)
Q Consensus 328 ~Gt~edlk~LV~~aH~~GikVIlD~V~ 354 (658)
.|...+++++++.||++|+.||+|-+.
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 466678999999999999999999873
No 292
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.53 E-value=1.6e+02 Score=30.27 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=45.5
Q ss_pred cHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCC--------CcccCCCCCCCCCC--------HHHHHHHHHHHHHcCC
Q 006158 283 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGY--------MPRDLYNLSSRYGN--------IDELKDVVNKFHDVGM 346 (658)
Q Consensus 283 dl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GY--------d~~Dy~~vDp~~Gt--------~edlk~LV~~aH~~Gi 346 (658)
+..-+...+..|+++||.. .|- .-.-|| -+.|+-+||..|-. ..-++.+|+-||+.||
T Consensus 134 ~~~~~~~~l~~L~~~G~~i-alD-----DFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 134 DLDTALALLRQLRELGVRI-ALD-----DFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred CHHHHHHHHHHHHHCCCeE-EEE-----CCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 4556777788888888643 221 111222 35566777765533 2469999999999999
Q ss_pred EEEEEeccc
Q 006158 347 KILGDVVLN 355 (658)
Q Consensus 347 kVIlD~V~N 355 (658)
+||...|=+
T Consensus 208 ~vvaEGVEt 216 (256)
T COG2200 208 TVVAEGVET 216 (256)
T ss_pred EEEEeecCC
Confidence 999999865
No 293
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.40 E-value=2.3e+02 Score=28.19 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCcHHHHHHhHHHHHHcCCCE-E----EeCCCCCCC-----------CCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHc
Q 006158 281 GRWYMELKEKATELSSLGFSV-I----WLPPPTESV-----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 344 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~-I----~L~Pi~~~~-----------s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~ 344 (658)
|-+|..+++.+.....-|+++ | |-+||+... +-||+-+.|. .+||-..|.++|+++
T Consensus 76 g~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k~ 147 (268)
T KOG4175|consen 76 GTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARKH 147 (268)
T ss_pred CCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHhc
Confidence 567999999999999999997 2 336666543 3466655553 468888999999999
Q ss_pred CCEEEEEeccc
Q 006158 345 GMKILGDVVLN 355 (658)
Q Consensus 345 GikVIlD~V~N 355 (658)
||.+|.=+.+.
T Consensus 148 gislvpLvaPs 158 (268)
T KOG4175|consen 148 GISLVPLVAPS 158 (268)
T ss_pred CceEEEeeCCC
Confidence 99999866554
No 294
>PRK09776 putative diguanylate cyclase; Provisional
Probab=20.33 E-value=1.1e+02 Score=38.03 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=49.1
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCC--------cccCCCCCCCCC--------CHHHHHHHHHHHHHcC
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRYG--------NIDELKDVVNKFHDVG 345 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd--------~~Dy~~vDp~~G--------t~edlk~LV~~aH~~G 345 (658)
-+...+.+.+..|+++|+..- |-=+ ..||. +.|+-+||..|= ...-++.+++.||+.|
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~~-lddf-----g~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1044 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRVV-LSDF-----GRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLG 1044 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEEE-EcCC-----CCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcC
Confidence 356778888999999998543 2211 12333 678888886652 2345888999999999
Q ss_pred CEEEEEecccc
Q 006158 346 MKILGDVVLNH 356 (658)
Q Consensus 346 ikVIlD~V~NH 356 (658)
++||...|=+.
T Consensus 1045 ~~~iaegVEt~ 1055 (1092)
T PRK09776 1045 MKTIAGPVELP 1055 (1092)
T ss_pred CcEEecccCCH
Confidence 99999988653
No 295
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=20.31 E-value=1.2e+03 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=46.5
Q ss_pred HhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCC-CCCCCHH-HHHHHHHHHHHcCCEEEEEeccccccCCCCC
Q 006158 289 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNID-ELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 363 (658)
Q Consensus 289 ~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vD-p~~Gt~e-dlk~LV~~aH~~GikVIlD~V~NHt~~~~~~ 363 (658)
+-..-+|+.|... ++|+.+++..---.+++|..-+ +..|... -+++|.+++.+.||+. .|.+|-+ .|+|
T Consensus 58 eWar~fK~aGAKy--vilvakHHDGFaLw~t~ys~wnsvk~GpKrDlvgela~Avr~qGL~F---Gvy~s~a-~h~W 128 (430)
T COG3669 58 EWARLFKEAGAKY--VILVAKHHDGFALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRF---GVYLSGA-WHPW 128 (430)
T ss_pred HHHHHHHHcCCcE--EEEeeeecCCeeecccccccccccccCCcccHHHHHHHHHHHcCCee---eEeeccC-cccc
Confidence 3445678888875 5577777733333345665554 5666654 5788999999999986 6778876 5654
No 296
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=20.29 E-value=1.5e+02 Score=26.77 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCC-cc---------------cCC----CCCCCCCCHHHHHHHHH
Q 006158 286 ELKEKATELSSLGFSVIWLPPPTESVSPEGYM-PR---------------DLY----NLSSRYGNIDELKDVVN 339 (658)
Q Consensus 286 Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd-~~---------------Dy~----~vDp~~Gt~edlk~LV~ 339 (658)
.+.+.|+.|+..|++.|.+.|.|-+.+.|-.. .- .+. .+-+.+|....+.+++.
T Consensus 47 ~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~ 120 (126)
T PRK00923 47 TIPEALKKLIGTGADKIIVVPVFLAHGVHTKRDIPRILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVL 120 (126)
T ss_pred CHHHHHHHHHHcCCCEEEEEchhhccCcccccccchhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHH
Confidence 37788888899999999999999887554332 11 111 34567787777766654
No 297
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.29 E-value=6.6e+02 Score=25.68 Aligned_cols=39 Identities=18% Similarity=0.046 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCccEEEE-cccCCCchHHHHHHHHHhC
Q 006158 416 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEATE 455 (658)
Q Consensus 416 ~~i~~~l~~w~~~~GIDGfRl-D~a~~~~~~~~~~~~~~~~ 455 (658)
+++.+.++... ++|+|.+++ |.+..+.+.-++++++.++
T Consensus 139 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 139 DFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 57777777776 799999998 7777766666666666553
No 298
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.24 E-value=1.5e+02 Score=34.85 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=50.6
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEeCCCCCCCC---CCCC---CcccCCCCCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 006158 282 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGY---MPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 350 (658)
Q Consensus 282 Gdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s---~~GY---d~~Dy~~vDp~~-----Gt~edlk~LV~~aH~~GikVIl 350 (658)
.++..+...+..|+++|+.. .|-=+-...+ +-.- -+.||-+||..| +...-++.++.-||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~i-alDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLLI-ALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCEE-EEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 46778888899999999973 4322211111 2223 567777787543 3345678888899999999999
Q ss_pred Eecccc
Q 006158 351 DVVLNH 356 (658)
Q Consensus 351 D~V~NH 356 (658)
..|=+.
T Consensus 615 egVEt~ 620 (660)
T PRK11829 615 EGVETE 620 (660)
T ss_pred ecCCCH
Confidence 998764
No 299
>PLN02428 lipoic acid synthase
Probab=20.12 E-value=3.4e+02 Score=29.46 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=50.0
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 006158 281 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 355 (658)
Q Consensus 281 GGdl~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V~N 355 (658)
|=+...+++.++.|+++|++.+-+..... ++..-+.+ .+|=++++|+++-+.|-+.|.+-+.-..+=
T Consensus 258 GET~Edv~e~l~~Lrelgvd~vtigqyL~-Ps~~h~~v-------~~~v~p~~f~~~~~~~~~~gf~~v~sgp~v 324 (349)
T PLN02428 258 GETDEEVVQTMEDLRAAGVDVVTFGQYLR-PTKRHLPV-------KEYVTPEKFEFWREYGEEMGFRYVASGPLV 324 (349)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEeeccccC-CCcceeee-------ecccCHHHHHHHHHHHHHcCCceEEecCcc
Confidence 56899999999999999999987765542 22222222 345678999999999999999877665554
No 300
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=20.06 E-value=1.8e+02 Score=33.01 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHcCCCEEEeCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 006158 284 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353 (658)
Q Consensus 284 l~Gi~~kLdYLk~LGv~~I~L~Pi~~~~s~~GYd~~Dy~~vDp~~Gt~edlk~LV~~aH~~GikVIlD~V 353 (658)
+.-..+-++-+++||+++.=++=-+...-..|.. -. +.-.+.+=.+.||++|+++||++|+.+.
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~----~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE----LT--PNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC----CC--CCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 6667788899999999998765433222111111 01 1222345689999999999999999874
Done!