Query 006160
Match_columns 658
No_of_seqs 359 out of 2547
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02631 ferric-chelate reduct 100.0 6.6E-88 1.4E-92 769.6 48.8 489 9-657 189-698 (699)
2 PLN02292 ferric-chelate reduct 100.0 1.3E-87 2.8E-92 768.6 45.1 486 4-657 199-701 (702)
3 PLN02844 oxidoreductase/ferric 100.0 1.4E-85 3E-90 753.9 49.5 497 4-658 185-722 (722)
4 KOG0039 Ferric reductase, NADH 100.0 3E-61 6.6E-66 552.9 33.8 394 9-656 231-646 (646)
5 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.3E-28 2.8E-33 245.8 24.3 158 127-430 2-161 (210)
6 COG4097 Predicted ferric reduc 100.0 1.4E-27 3E-32 249.4 26.2 248 69-487 148-411 (438)
7 cd06212 monooxygenase_like The 99.9 1.3E-22 2.9E-27 205.9 24.4 166 123-452 2-171 (232)
8 cd06184 flavohem_like_fad_nad_ 99.9 2.7E-22 5.9E-27 205.5 25.2 172 119-453 4-182 (247)
9 cd06213 oxygenase_e_transfer_s 99.9 2.6E-22 5.7E-27 203.2 23.3 166 123-452 2-169 (227)
10 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2.6E-22 5.7E-27 205.1 23.1 165 126-454 2-172 (241)
11 cd06209 BenDO_FAD_NAD Benzoate 99.9 3.3E-22 7.2E-27 202.5 23.1 165 123-453 3-171 (228)
12 cd06198 FNR_like_3 NAD(P) bind 99.9 2.8E-22 6E-27 201.4 21.9 137 134-428 7-144 (216)
13 cd06191 FNR_iron_sulfur_bindin 99.9 7.4E-22 1.6E-26 200.3 22.6 166 125-453 2-171 (231)
14 PRK07609 CDP-6-deoxy-delta-3,4 99.9 7E-22 1.5E-26 212.2 23.4 166 122-452 103-272 (339)
15 cd06216 FNR_iron_sulfur_bindin 99.9 7.9E-22 1.7E-26 201.8 20.5 212 111-488 2-221 (243)
16 cd06189 flavin_oxioreductase N 99.9 1.1E-21 2.3E-26 198.4 20.8 197 125-488 2-201 (224)
17 cd06215 FNR_iron_sulfur_bindin 99.9 1.8E-21 4E-26 196.9 20.6 201 125-488 2-208 (231)
18 cd06214 PA_degradation_oxidore 99.9 6.4E-21 1.4E-25 194.4 24.4 168 123-452 3-177 (241)
19 cd06188 NADH_quinone_reductase 99.9 2.3E-21 5.1E-26 203.2 21.5 86 356-452 134-219 (283)
20 PRK11872 antC anthranilate dio 99.9 4.4E-21 9.4E-26 206.5 23.2 167 122-453 107-278 (340)
21 PF08030 NAD_binding_6: Ferric 99.9 2.2E-22 4.9E-27 191.7 11.7 79 373-454 1-79 (156)
22 cd06210 MMO_FAD_NAD_binding Me 99.9 3.6E-21 7.9E-26 195.7 20.3 201 123-488 3-212 (236)
23 cd06211 phenol_2-monooxygenase 99.9 4.3E-21 9.2E-26 195.9 20.4 204 123-491 8-218 (238)
24 cd06190 T4MO_e_transfer_like T 99.9 4.2E-21 9E-26 194.8 19.8 199 127-488 2-207 (232)
25 PRK08051 fre FMN reductase; Va 99.9 5.4E-21 1.2E-25 194.8 20.5 199 123-488 4-205 (232)
26 PRK13289 bifunctional nitric o 99.9 1.3E-20 2.9E-25 206.5 24.8 168 122-452 155-329 (399)
27 cd06217 FNR_iron_sulfur_bindin 99.9 7.5E-21 1.6E-25 193.0 21.2 203 123-488 3-212 (235)
28 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.4E-20 3E-25 203.2 24.0 169 123-453 3-179 (352)
29 cd06187 O2ase_reductase_like T 99.9 7.7E-21 1.7E-25 191.5 20.0 199 127-490 2-203 (224)
30 cd06194 FNR_N-term_Iron_sulfur 99.9 8.7E-21 1.9E-25 191.2 20.3 197 127-491 2-201 (222)
31 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.6E-20 3.6E-25 193.1 21.7 142 127-428 2-145 (246)
32 cd00322 FNR_like Ferredoxin re 99.9 1.9E-20 4E-25 187.6 21.0 196 129-488 3-202 (223)
33 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1E-20 2.2E-25 191.6 19.2 149 129-428 3-175 (220)
34 cd06221 sulfite_reductase_like 99.9 3.5E-20 7.5E-25 191.5 20.7 196 127-489 2-202 (253)
35 PRK10684 HCP oxidoreductase, N 99.8 6.3E-20 1.4E-24 196.8 20.6 204 123-490 11-216 (332)
36 cd06196 FNR_like_1 Ferredoxin 99.8 8E-20 1.7E-24 183.7 20.1 192 123-488 2-197 (218)
37 PRK08345 cytochrome-c3 hydroge 99.8 2E-19 4.3E-24 189.5 23.6 168 122-454 6-179 (289)
38 cd06185 PDR_like Phthalate dio 99.8 2.6E-19 5.6E-24 178.9 23.0 68 128-199 2-75 (211)
39 cd06183 cyt_b5_reduct_like Cyt 99.8 1.2E-19 2.5E-24 183.7 20.5 205 125-490 2-214 (234)
40 PRK05464 Na(+)-translocating N 99.8 3.9E-19 8.4E-24 196.0 23.5 86 356-452 258-343 (409)
41 cd06220 DHOD_e_trans_like2 FAD 99.8 8.1E-19 1.7E-23 178.9 23.6 133 125-428 2-134 (233)
42 PRK00054 dihydroorotate dehydr 99.8 4.5E-19 9.8E-24 182.8 21.5 146 122-429 5-150 (250)
43 PRK06222 ferredoxin-NADP(+) re 99.8 3.3E-19 7.1E-24 187.2 20.1 191 124-490 2-194 (281)
44 TIGR01941 nqrF NADH:ubiquinone 99.8 7E-19 1.5E-23 193.7 22.3 86 356-452 254-339 (405)
45 PRK10926 ferredoxin-NADP reduc 99.8 1.2E-18 2.5E-23 179.7 21.2 201 123-488 6-217 (248)
46 cd06192 DHOD_e_trans_like FAD/ 99.8 6.5E-19 1.4E-23 180.5 19.2 142 127-428 2-144 (243)
47 COG1018 Hmp Flavodoxin reducta 99.8 4.8E-18 1E-22 176.8 24.6 148 122-427 6-157 (266)
48 cd06219 DHOD_e_trans_like1 FAD 99.8 1E-18 2.3E-23 179.9 19.3 190 125-490 2-193 (248)
49 PTZ00274 cytochrome b5 reducta 99.8 1.7E-18 3.7E-23 185.2 21.4 211 121-488 52-274 (325)
50 PLN03116 ferredoxin--NADP+ red 99.8 2E-18 4.3E-23 183.4 21.7 129 356-490 137-272 (307)
51 PTZ00319 NADH-cytochrome B5 re 99.8 2.6E-18 5.7E-23 182.0 21.5 204 122-488 34-278 (300)
52 PRK08221 anaerobic sulfite red 99.8 3.6E-18 7.9E-23 177.6 21.7 194 123-489 9-204 (263)
53 PRK05802 hypothetical protein; 99.8 3.7E-18 8E-23 182.4 21.4 75 123-198 66-143 (320)
54 cd06208 CYPOR_like_FNR These f 99.8 9.5E-18 2.1E-22 176.4 23.0 209 123-488 10-250 (286)
55 TIGR02911 sulfite_red_B sulfit 99.8 4.2E-18 9E-23 177.0 20.1 193 123-488 7-201 (261)
56 COG0543 UbiB 2-polyprenylpheno 99.8 1.2E-17 2.5E-22 172.9 20.2 191 124-488 10-203 (252)
57 KOG0534 NADH-cytochrome b-5 re 99.8 5.6E-18 1.2E-22 176.2 16.4 205 122-488 52-264 (286)
58 cd06200 SiR_like1 Cytochrome p 99.8 1.8E-17 3.9E-22 170.6 19.1 86 356-453 92-178 (245)
59 PRK05713 hypothetical protein; 99.8 8.5E-18 1.8E-22 178.9 17.1 189 123-488 93-285 (312)
60 PF08022 FAD_binding_8: FAD-bi 99.8 2.9E-20 6.3E-25 167.3 -1.6 80 123-204 3-85 (105)
61 cd06182 CYPOR_like NADPH cytoc 99.8 2.7E-17 5.9E-22 171.5 20.1 161 134-454 15-190 (267)
62 PLN02252 nitrate reductase [NA 99.8 3.1E-17 6.7E-22 194.7 20.9 207 122-490 635-868 (888)
63 PLN03115 ferredoxin--NADP(+) r 99.7 6.2E-17 1.3E-21 175.4 21.1 126 356-487 197-329 (367)
64 TIGR03224 benzo_boxA benzoyl-C 99.7 8.7E-17 1.9E-21 177.4 21.3 88 356-453 249-337 (411)
65 PRK12778 putative bifunctional 99.7 3E-16 6.6E-21 185.4 19.9 191 124-490 2-194 (752)
66 PRK12779 putative bifunctional 99.7 1.1E-15 2.4E-20 183.4 22.9 73 122-197 649-722 (944)
67 PRK12775 putative trifunctiona 99.7 1.3E-15 2.8E-20 184.2 22.7 143 124-428 2-146 (1006)
68 cd06201 SiR_like2 Cytochrome p 99.7 2E-15 4.3E-20 159.3 19.4 74 122-199 46-132 (289)
69 PTZ00306 NADH-dependent fumara 99.6 3E-14 6.5E-19 175.2 20.9 206 123-488 916-1140(1167)
70 cd06193 siderophore_interactin 99.6 2.8E-14 6E-19 145.9 16.7 71 126-197 1-96 (235)
71 COG2871 NqrF Na+-transporting 99.4 9.5E-13 2.1E-17 134.3 8.6 155 316-486 223-383 (410)
72 cd06199 SiR Cytochrome p450- l 99.3 8.7E-12 1.9E-16 135.6 10.4 118 356-488 195-318 (360)
73 cd06206 bifunctional_CYPOR The 99.3 4.8E-11 1E-15 130.9 15.8 124 353-487 210-338 (384)
74 TIGR01931 cysJ sulfite reducta 99.2 2.4E-11 5.1E-16 140.2 10.5 85 357-452 433-519 (597)
75 cd06207 CyPoR_like NADPH cytoc 99.2 7.4E-11 1.6E-15 129.3 13.8 92 356-454 213-305 (382)
76 PRK06214 sulfite reductase; Pr 99.2 1.5E-10 3.2E-15 131.2 14.5 124 353-488 364-488 (530)
77 cd06203 methionine_synthase_re 99.2 4.1E-10 9E-15 124.1 16.1 126 357-488 223-356 (398)
78 PRK06567 putative bifunctional 99.1 2.1E-09 4.5E-14 127.7 16.6 76 123-199 792-871 (1028)
79 cd06204 CYPOR NADPH cytochrome 99.1 1.5E-09 3.3E-14 120.3 14.1 90 357-453 249-339 (416)
80 PF00970 FAD_binding_6: Oxidor 99.0 3.3E-09 7.1E-14 93.7 9.8 75 124-199 2-81 (99)
81 PRK10953 cysJ sulfite reductas 98.9 2.7E-09 5.8E-14 123.1 10.2 88 356-454 435-524 (600)
82 cd06202 Nitric_oxide_synthase 98.9 1.8E-08 4E-13 111.4 14.4 77 372-453 245-324 (406)
83 PF01794 Ferric_reduct: Ferric 98.8 9.5E-09 2E-13 94.0 8.0 79 11-89 36-123 (125)
84 PF00175 NAD_binding_1: Oxidor 98.8 7.6E-09 1.6E-13 92.3 5.6 99 378-488 1-103 (109)
85 KOG1924 RhoA GTPase effector D 98.5 2E-07 4.3E-12 105.7 8.5 6 359-364 622-627 (1102)
86 KOG3378 Globins and related he 97.9 0.00011 2.3E-09 75.7 10.8 92 99-190 122-224 (385)
87 COG0369 CysJ Sulfite reductase 97.8 0.00017 3.7E-09 83.1 12.6 102 373-488 440-545 (587)
88 KOG1158 NADP/FAD dependent oxi 97.5 0.00043 9.3E-09 80.1 11.1 108 371-488 489-603 (645)
89 PRK05419 putative sulfite oxid 97.1 0.0039 8.4E-08 63.0 10.8 82 11-94 76-164 (205)
90 COG2717 Predicted membrane pro 95.8 0.059 1.3E-06 54.4 9.9 74 45-118 115-194 (209)
91 KOG1923 Rac1 GTPase effector F 95.0 0.061 1.3E-06 62.6 7.7 14 47-60 38-51 (830)
92 KOG1159 NADP-dependent flavopr 94.6 0.19 4.2E-06 56.2 10.0 41 373-420 432-472 (574)
93 PRK15319 AIDA autotransporter- 93.4 0.12 2.6E-06 65.4 6.2 6 616-621 1947-1952(2039)
94 PRK15319 AIDA autotransporter- 93.0 0.13 2.8E-06 65.2 5.5 7 356-362 1765-1771(2039)
95 KOG4849 mRNA cleavage factor I 92.5 0.27 5.9E-06 52.5 6.4 14 280-293 273-286 (498)
96 cd06197 FNR_like_2 FAD/NAD(P) 89.6 0.33 7.1E-06 49.3 3.7 29 618-657 192-220 (220)
97 KOG3671 Actin regulatory prote 89.3 0.91 2E-05 50.9 7.0 17 160-176 246-262 (569)
98 KOG3671 Actin regulatory prote 89.1 0.76 1.6E-05 51.5 6.2 13 39-54 56-68 (569)
99 PRK15313 autotransport protein 88.2 0.79 1.7E-05 55.3 6.0 10 182-191 498-507 (955)
100 PRK08051 fre FMN reductase; Va 86.1 0.49 1.1E-05 48.2 2.5 34 618-657 196-230 (232)
101 cd06189 flavin_oxioreductase N 84.6 0.64 1.4E-05 46.9 2.5 35 616-656 190-224 (224)
102 cd06210 MMO_FAD_NAD_binding Me 83.0 1.9 4.1E-05 43.7 5.2 33 618-656 203-235 (236)
103 KOG0132 RNA polymerase II C-te 82.9 4.4 9.5E-05 47.9 8.4 16 291-306 654-669 (894)
104 cd06215 FNR_iron_sulfur_bindin 82.5 0.97 2.1E-05 45.6 2.8 23 617-639 198-220 (231)
105 cd06187 O2ase_reductase_like T 81.5 2.3 4.9E-05 42.6 5.1 22 617-638 191-212 (224)
106 COG4097 Predicted ferric reduc 80.9 0.79 1.7E-05 50.0 1.5 58 36-94 32-94 (438)
107 COG2375 ViuB Siderophore-inter 80.7 57 0.0012 34.5 15.0 40 356-396 127-166 (265)
108 cd06217 FNR_iron_sulfur_bindin 80.7 1.3 2.8E-05 44.8 2.9 23 617-639 202-224 (235)
109 cd06194 FNR_N-term_Iron_sulfur 79.9 1.6 3.5E-05 43.8 3.3 36 616-657 187-222 (222)
110 PF00175 NAD_binding_1: Oxidor 79.5 1.3 2.9E-05 38.9 2.3 19 615-633 91-109 (109)
111 PF08021 FAD_binding_9: Sidero 79.2 8.8 0.00019 35.3 7.7 67 125-192 1-91 (117)
112 PRK10684 HCP oxidoreductase, N 78.7 1.5 3.3E-05 47.3 2.9 34 618-657 205-238 (332)
113 PF01690 PLRV_ORF5: Potato lea 78.7 1.3 2.9E-05 49.5 2.4 8 309-316 31-38 (465)
114 PRK09752 adhesin; Provisional 78.2 2.2 4.8E-05 52.7 4.2 8 510-517 1123-1130(1250)
115 cd06211 phenol_2-monooxygenase 77.6 1.5 3.3E-05 44.7 2.3 23 617-639 205-227 (238)
116 cd06216 FNR_iron_sulfur_bindin 76.6 2.8 6.1E-05 42.7 4.0 21 617-637 211-231 (243)
117 PHA03378 EBNA-3B; Provisional 76.2 8.6 0.00019 44.9 7.8 12 388-399 821-832 (991)
118 PRK05713 hypothetical protein; 75.0 2.1 4.5E-05 45.9 2.6 35 617-657 275-309 (312)
119 KOG1830 Wiskott Aldrich syndro 71.5 16 0.00034 40.6 8.1 11 246-256 287-297 (518)
120 cd06190 T4MO_e_transfer_like T 70.9 3.9 8.5E-05 41.3 3.4 23 616-638 196-218 (232)
121 COG5178 PRP8 U5 snRNP spliceos 69.9 4 8.6E-05 50.0 3.5 18 501-518 264-281 (2365)
122 KOG4368 Predicted RNA binding 66.2 22 0.00047 41.0 8.0 18 75-94 157-174 (757)
123 KOG0534 NADH-cytochrome b-5 re 65.2 10 0.00022 40.4 5.2 40 597-637 235-274 (286)
124 KOG0391 SNF2 family DNA-depend 64.7 11 0.00024 46.9 5.7 22 315-336 1934-1955(1958)
125 KOG1925 Rac1 GTPase effector F 63.2 9.7 0.00021 43.0 4.6 15 596-610 543-557 (817)
126 KOG3895 Synaptic vesicle prote 61.7 35 0.00075 37.3 8.2 6 359-364 482-487 (488)
127 KOG2391 Vacuolar sorting prote 60.4 20 0.00043 38.9 6.2 13 249-261 135-147 (365)
128 PF02162 XYPPX: XYPPX repeat ( 60.1 6.6 0.00014 23.1 1.4 10 265-274 4-13 (15)
129 cd06193 siderophore_interactin 59.7 7.6 0.00016 39.6 3.0 57 356-422 104-160 (235)
130 cd06196 FNR_like_1 Ferredoxin 59.5 7 0.00015 39.0 2.6 22 618-639 188-209 (218)
131 KOG0391 SNF2 family DNA-depend 58.3 27 0.0006 43.7 7.5 6 149-154 1653-1658(1958)
132 COG0543 UbiB 2-polyprenylpheno 56.0 16 0.00034 38.0 4.6 24 616-639 192-215 (252)
133 KOG1830 Wiskott Aldrich syndro 55.8 80 0.0017 35.3 9.9 6 69-74 97-102 (518)
134 KOG1925 Rac1 GTPase effector F 55.8 12 0.00027 42.2 3.8 11 357-367 292-302 (817)
135 cd00322 FNR_like Ferredoxin re 55.5 9.9 0.00021 37.7 2.9 23 616-638 191-213 (223)
136 PRK10926 ferredoxin-NADP reduc 54.5 10 0.00022 39.1 2.9 23 617-639 207-229 (248)
137 PF03929 PepSY_TM: PepSY-assoc 54.5 15 0.00033 25.1 2.8 24 9-33 2-25 (27)
138 PRK06222 ferredoxin-NADP(+) re 53.7 20 0.00042 37.8 4.9 22 618-639 183-204 (281)
139 PRK08345 cytochrome-c3 hydroge 52.7 13 0.00029 39.3 3.5 23 617-639 213-235 (289)
140 PF01794 Ferric_reduct: Ferric 51.4 35 0.00076 30.5 5.6 47 49-95 1-53 (125)
141 PRK00054 dihydroorotate dehydr 50.4 29 0.00063 35.7 5.5 35 600-638 169-203 (250)
142 KOG1984 Vesicle coat complex C 49.0 28 0.00061 42.0 5.6 8 534-541 458-465 (1007)
143 cd06183 cyt_b5_reduct_like Cyt 48.9 25 0.00055 35.2 4.7 25 615-639 200-225 (234)
144 cd06208 CYPOR_like_FNR These f 48.4 14 0.0003 39.1 2.8 21 617-637 240-260 (286)
145 cd06201 SiR_like2 Cytochrome p 48.1 14 0.00031 39.0 2.9 85 351-452 135-221 (289)
146 PLN03116 ferredoxin--NADP+ red 47.9 14 0.00031 39.4 2.9 69 123-191 26-108 (307)
147 PF13172 PepSY_TM_1: PepSY-ass 47.3 20 0.00044 25.5 2.6 24 9-33 6-29 (34)
148 PF00033 Cytochrom_B_N: Cytoch 45.7 71 0.0015 30.6 7.2 24 72-95 145-169 (188)
149 cd06219 DHOD_e_trans_like1 FAD 45.1 30 0.00065 35.6 4.6 20 618-637 182-201 (248)
150 PF13706 PepSY_TM_3: PepSY-ass 44.8 24 0.00052 25.8 2.7 24 9-33 5-28 (37)
151 KOG2236 Uncharacterized conser 43.8 64 0.0014 36.4 7.0 6 273-278 412-417 (483)
152 cd06192 DHOD_e_trans_like FAD/ 42.3 21 0.00044 36.5 2.9 22 617-638 179-200 (243)
153 cd06221 sulfite_reductase_like 41.5 23 0.0005 36.5 3.2 24 616-639 190-213 (253)
154 KOG2391 Vacuolar sorting prote 41.4 47 0.001 36.1 5.3 8 164-171 76-83 (365)
155 PF01292 Ni_hydr_CYTB: Prokary 40.8 40 0.00087 32.4 4.5 25 71-95 138-163 (182)
156 cd06182 CYPOR_like NADPH cytoc 40.4 19 0.00042 37.6 2.4 21 618-638 216-237 (267)
157 cd06200 SiR_like1 Cytochrome p 40.2 22 0.00047 36.6 2.7 53 135-191 17-70 (245)
158 PF05308 Mito_fiss_reg: Mitoch 40.2 43 0.00092 35.2 4.8 13 64-76 26-38 (253)
159 PF05518 Totivirus_coat: Totiv 40.0 71 0.0015 38.3 7.0 7 193-199 610-616 (759)
160 KOG4590 Signal transduction pr 39.8 39 0.00083 37.9 4.6 7 134-140 31-37 (409)
161 TIGR02911 sulfite_red_B sulfit 39.0 32 0.00069 35.8 3.7 24 616-639 190-213 (261)
162 PTZ00274 cytochrome b5 reducta 38.0 29 0.00063 37.7 3.3 18 617-634 264-281 (325)
163 MTH00191 CYTB cytochrome b; Pr 36.3 94 0.002 34.4 7.0 54 3-64 68-127 (365)
164 cd06206 bifunctional_CYPOR The 34.7 27 0.0006 38.5 2.6 27 134-160 15-41 (384)
165 cd00284 Cytochrome_b_N Cytochr 34.0 1.2E+02 0.0026 30.6 6.8 14 3-16 63-79 (200)
166 KOG2893 Zn finger protein [Gen 33.8 2.2E+02 0.0048 29.6 8.5 10 357-366 246-255 (341)
167 PHA03378 EBNA-3B; Provisional 33.7 85 0.0018 37.2 6.2 14 326-339 792-805 (991)
168 KOG0162 Myosin class I heavy c 33.5 2.4E+02 0.0051 34.1 9.6 12 320-331 1027-1038(1106)
169 PF05308 Mito_fiss_reg: Mitoch 33.4 60 0.0013 34.1 4.6 11 385-395 237-247 (253)
170 KOG4590 Signal transduction pr 33.0 63 0.0014 36.2 4.9 8 123-130 33-40 (409)
171 PF14358 DUF4405: Domain of un 32.6 75 0.0016 25.7 4.2 28 68-95 33-61 (64)
172 PF09874 DUF2101: Predicted me 32.5 3.4E+02 0.0073 27.7 9.4 34 122-155 142-175 (206)
173 PF06003 SMN: Survival motor n 32.5 15 0.00032 38.8 0.0 39 146-187 66-104 (264)
174 MTH00156 CYTB cytochrome b; Pr 32.2 1.5E+02 0.0033 32.6 7.8 54 3-64 61-120 (356)
175 MTH00016 CYTB cytochrome b; Va 31.1 1.3E+02 0.0028 33.6 6.9 53 3-63 72-130 (378)
176 KOG0132 RNA polymerase II C-te 31.0 2.3E+02 0.005 34.3 9.1 9 380-388 705-713 (894)
177 PTZ00319 NADH-cytochrome B5 re 30.9 40 0.00087 35.9 3.0 22 616-637 267-289 (300)
178 KOG2675 Adenylate cyclase-asso 30.4 35 0.00075 38.2 2.4 11 192-202 187-197 (480)
179 MTH00034 CYTB cytochrome b; Va 30.3 1.3E+02 0.0028 33.5 6.8 54 3-64 71-130 (379)
180 PRK08221 anaerobic sulfite red 29.9 54 0.0012 34.1 3.7 23 616-638 192-214 (263)
181 PF07174 FAP: Fibronectin-atta 29.6 2.8E+02 0.0062 29.4 8.6 25 615-639 256-286 (297)
182 TIGR03224 benzo_boxA benzoyl-C 29.2 42 0.00092 37.6 2.9 68 123-190 144-224 (411)
183 PLN03115 ferredoxin--NADP(+) r 29.2 67 0.0015 35.5 4.4 67 124-190 93-171 (367)
184 PF01213 CAP_N: Adenylate cycl 28.8 19 0.00041 39.0 0.0 59 62-120 114-176 (312)
185 KOG3161 Predicted E3 ubiquitin 26.9 2.4E+02 0.0052 33.4 8.2 28 251-278 444-471 (861)
186 PRK05802 hypothetical protein; 26.9 50 0.0011 35.7 2.9 64 356-427 150-218 (320)
187 MTH00131 CYTB cytochrome b; Pr 26.8 1.9E+02 0.0041 32.2 7.4 54 3-64 71-130 (380)
188 MTH00100 CYTB cytochrome b; Pr 26.7 1.6E+02 0.0034 32.8 6.7 53 3-63 71-129 (379)
189 MTH00074 CYTB cytochrome b; Pr 25.5 2.1E+02 0.0046 31.8 7.5 53 3-63 72-130 (380)
190 KOG2199 Signal transducing ada 25.4 1.1E+02 0.0024 34.1 5.0 13 146-158 231-243 (462)
191 KOG0559 Dihydrolipoamide succi 24.3 2.1E+02 0.0045 31.7 6.7 10 147-156 92-101 (457)
192 cd06207 CyPoR_like NADPH cytoc 24.2 48 0.001 36.6 2.2 27 134-160 15-42 (382)
193 KOG1785 Tyrosine kinase negati 24.2 1.3E+02 0.0027 33.6 5.2 14 107-120 228-241 (563)
194 PLN02631 ferric-chelate reduct 24.1 1.9E+02 0.0042 34.8 7.2 51 45-95 152-208 (699)
195 PRK12446 undecaprenyldiphospho 23.7 93 0.002 33.9 4.2 24 374-397 2-27 (352)
196 PF09842 DUF2069: Predicted me 23.7 1.2E+02 0.0027 27.6 4.3 51 12-72 56-106 (109)
197 PF05750 Rubella_Capsid: Rubel 23.6 3.3E+02 0.0071 27.2 7.5 24 212-235 38-61 (300)
198 PF03276 Gag_spuma: Spumavirus 23.5 1E+02 0.0022 35.6 4.5 15 356-370 291-305 (582)
199 MTH00145 CYTB cytochrome b; Pr 22.8 2E+02 0.0042 32.1 6.5 14 3-16 72-88 (379)
200 MTH00086 CYTB cytochrome b; Pr 22.7 2.3E+02 0.0049 31.3 6.9 54 3-63 60-118 (355)
201 cd06202 Nitric_oxide_synthase 22.5 60 0.0013 36.2 2.5 26 135-160 16-43 (406)
202 PF11118 DUF2627: Protein of u 22.2 1.3E+02 0.0028 25.8 3.8 49 496-546 15-63 (77)
203 PLN02252 nitrate reductase [NA 22.1 1E+02 0.0022 38.2 4.6 22 616-637 855-877 (888)
204 MTH00022 CYTB cytochrome b; Va 22.1 2.4E+02 0.0051 31.5 7.0 55 3-64 70-129 (379)
205 cd06204 CYPOR NADPH cytochrome 21.7 60 0.0013 36.3 2.3 37 124-160 8-49 (416)
206 cd06199 SiR Cytochrome p450- l 21.6 57 0.0012 35.8 2.1 27 134-160 15-42 (360)
207 PF00667 FAD_binding_1: FAD bi 21.3 96 0.0021 31.4 3.6 27 164-190 176-202 (219)
208 MTH00053 CYTB cytochrome b; Pr 20.7 2.8E+02 0.0061 30.9 7.2 57 3-64 72-131 (381)
209 PRK14950 DNA polymerase III su 20.4 2.5E+02 0.0055 33.0 7.2 68 253-339 390-457 (585)
210 MTH00033 CYTB cytochrome b; Pr 20.3 1.8E+02 0.0039 32.5 5.6 57 3-64 68-127 (383)
211 PLN02844 oxidoreductase/ferric 20.1 2.8E+02 0.006 33.7 7.5 52 44-95 154-211 (722)
No 1
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=6.6e-88 Score=769.62 Aligned_cols=489 Identities=32% Similarity=0.589 Sum_probs=407.1
Q ss_pred chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHH
Q 006160 9 WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ 81 (658)
Q Consensus 9 ~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~ 81 (658)
..+|||+| +.|+++|+++|...+.+ .+...|....+.+++|++|++++++|+++|++++||++||+|+++|+
T Consensus 189 i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~-~~~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hi 267 (699)
T PLN02631 189 IKYHIWLGHVSNFLFLVHTVVFLIYWAMINKL-METFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHH 267 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-hhhhhcccccchHHHHHHHHHHHHHHHHhccHHHHhhhhhHHHHHHH
Confidence 35999999 35788888888877776 44566765455679999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCC
Q 006160 82 LYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRE 161 (658)
Q Consensus 82 l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~ 161 (658)
++++|++++++|++..+.+|+++++++|++||++|.+|.....++++++.++++++++++++++.++|+||||++|++|.
T Consensus 268 llaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~~r~~~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~ 347 (699)
T PLN02631 268 LYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRFLQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPS 347 (699)
T ss_pred HHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHHHHHhceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEecc
Confidence 99888999999997666677889999999999999999877788889999999999999998888999999999999999
Q ss_pred CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 006160 162 LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYEN 241 (658)
Q Consensus 162 is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (658)
.+++|||||||+|+|++++++++++||+.|+||++|++.+....
T Consensus 348 ~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~~g------------------------------------ 391 (699)
T PLN02631 348 ISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSSSI------------------------------------ 391 (699)
T ss_pred CCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhcCC------------------------------------
Confidence 99999999999999864458999999999999999988763210
Q ss_pred hhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccc
Q 006160 242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321 (658)
Q Consensus 242 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (658)
T Consensus 392 -------------------------------------------------------------------------------- 391 (699)
T PLN02631 392 -------------------------------------------------------------------------------- 391 (699)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhcc
Q 006160 322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINE 401 (658)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~ 401 (658)
+.+++.+|||||....+..+++++||||||+||||++|++++++++..+
T Consensus 392 -------------------------------~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~ 440 (699)
T PLN02631 392 -------------------------------DSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN 440 (699)
T ss_pred -------------------------------CeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc
Confidence 2347899999997654556789999999999999999999999976432
Q ss_pred CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccc-cccccccCCCCCCcee
Q 006160 402 GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHK-TMSSSIYPVPSGCAMS 480 (658)
Q Consensus 402 ~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~-~~v~~~~P~~~d~~~~ 480 (658)
.. .+.++|+|+|++|+.+|+.+.+++.....++...++.++++++||||++++. ++....+ ....+++|.++|.+++
T Consensus 441 ~~-~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 518 (699)
T PLN02631 441 PS-TKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP-ETTDDHRLLQTKWFKPQPLDSPIS 518 (699)
T ss_pred cc-cCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc-ccccccccccccccccCCCCCCce
Confidence 11 2345899999999999999777765422222223456899999999987653 2222211 2236789999999999
Q ss_pred EeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCC-----CcchhhHHHHHHHHHhhheeeccceeeeeehhhhhhc
Q 006160 481 VLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN-----IHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKS 555 (658)
Q Consensus 481 ~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~-----~~~~~~~~~l~~~~~~~~v~i~g~~~~~~w~~~~~~~ 555 (658)
.+.||++|+|++++|++||+|||+++|+++||||||+| +|+||.+++++++..|++|+ .||+++.+||.+++++
T Consensus 519 ~~~g~~~~lw~~~~~~~s~~~f~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~ 597 (699)
T PLN02631 519 PVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFSYRGLWDMFLGSVCIF-ISSSIVFLWRKKQNKE 597 (699)
T ss_pred eeecCCccHHHHHHHHHHHHHHHHHHHhhheeEecccCCCCCcccchHHHHHHHHHHHHhhee-ccceeeeeechhhccc
Confidence 99999999999999999999999999999999999999 78899999999966555432 2888888998887776
Q ss_pred ccccc-CCCCccccccccc-------cccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChhh
Q 006160 556 SAREN-YKDDSIEVDNAQN-------VGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSL 627 (658)
Q Consensus 556 ~~~~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m 627 (658)
..+++ +|+|.+|++++.. +.+.|+|+.+.+++.+.+++|||+|||+++|+.|.. ++++|||++|||++|
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~---~~~~vgvlv~gp~~~ 674 (699)
T PLN02631 598 GDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILLEAE---GSEDVGVMVCGPRKM 674 (699)
T ss_pred cccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHHhcc---CCCceeEEEECcHHH
Confidence 66554 7888888666522 336788888888999999999999999999998443 346999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 628 QSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 628 ~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
+++||+.|++.+ ++| |||||.|||
T Consensus 675 ~~~va~~c~s~~----~~~--~~f~s~sf~ 698 (699)
T PLN02631 675 RHEVAKICSSGL----AKN--LHFEAISFN 698 (699)
T ss_pred HHHHHHHHhcCC----Ccc--eeEEeeccc
Confidence 999999999955 445 999999998
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.3e-87 Score=768.61 Aligned_cols=486 Identities=32% Similarity=0.580 Sum_probs=405.8
Q ss_pred ccccc--chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcch
Q 006160 4 DTMYG--WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ 74 (658)
Q Consensus 4 ~~~~~--~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE 74 (658)
|-.|. ..+|||+| +.|+++|+++|..++.. .++..|...+..+++|++|++++++|+++|++++||++||
T Consensus 199 G~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~-~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE 277 (702)
T PLN02292 199 GLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQV-SQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFE 277 (702)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhcccH
Confidence 34444 45899999 35788888888888776 6667887767778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcE
Q 006160 75 LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSF 154 (658)
Q Consensus 75 ~F~~~H~l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~ 154 (658)
+|+++|++++++++++++|+...+..|+++++++|++||++|++|++...++++++.++++++++++++++.++|+||||
T Consensus 278 ~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~~r~~~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~ 357 (702)
T PLN02292 278 VFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRFLQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSI 357 (702)
T ss_pred hHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCe
Confidence 99999999988888999999755555678899999999999999988788999999999999999999988899999999
Q ss_pred EEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 006160 155 FFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPV 234 (658)
Q Consensus 155 v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (658)
+|+++|..+++|+||||++|+|.+++++++++||+.|+||++|++.+...+.
T Consensus 358 vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~gd~---------------------------- 409 (702)
T PLN02292 358 MFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSSSDQ---------------------------- 409 (702)
T ss_pred EEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCCCCc----------------------------
Confidence 9999999889999999999998544588999999999999999887632110
Q ss_pred ccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 006160 235 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVV 314 (658)
Q Consensus 235 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (658)
T Consensus 410 -------------------------------------------------------------------------------- 409 (702)
T PLN02292 410 -------------------------------------------------------------------------------- 409 (702)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHH
Q 006160 315 AGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD 394 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ 394 (658)
. ..++|.||||||+...+..++++++|||||+||||+++++++
T Consensus 410 --------------------------------i-----~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~ 452 (702)
T PLN02292 410 --------------------------------I-----DRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRD 452 (702)
T ss_pred --------------------------------c-----ccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHH
Confidence 0 124799999999876555678999999999999999999999
Q ss_pred HHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC-CccCCCCceEEEEEEcCCCCCCCCccccccccccc--cc
Q 006160 395 ILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC-PFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSS--IY 471 (658)
Q Consensus 395 ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~-~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~--~~ 471 (658)
++++..++ .+..++|+|+|++|+.+|+.+++++.+|+.. ....++.++++++|+|+++++..+.....++++.+ ++
T Consensus 453 L~~~~~~~-~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~ 531 (702)
T PLN02292 453 LIYTSSTE-TCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNIIKTLWFK 531 (702)
T ss_pred HHhccccc-cCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCcccccchhhhhhhcCC
Confidence 98764221 1234789999999999999998888776521 11234578999999999987654333334445544 45
Q ss_pred CCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCC----CcchhhHHHHHHHHHhhheeeccceeeee
Q 006160 472 PVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFN----IHSWWYKGLLFLACMVGGVLIFGGTVIGF 547 (658)
Q Consensus 472 P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~----~~~~~~~~~l~~~~~~~~v~i~g~~~~~~ 547 (658)
|.++|++++.+|||++|+|++++|+|||+||++++|+++||||||+| .|+||+++++++++||+||++ ||+++.+
T Consensus 532 p~~~~~~~~~~~Gp~~~~w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 610 (702)
T PLN02292 532 PNLSDQPISPILGPNSWLWLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYTLAYKSLIYLLVISISVVA-TSTAAML 610 (702)
T ss_pred CCCCCCceEEEeCCCchHHHHHHHHHHHHHHHHHHHHhheeEeccccCCCCCCccHHHHHHHHHHHHHHhhh-hhhHHHh
Confidence 66669999999999999999999999999999999999999999999 667999999999999999998 7777887
Q ss_pred ehhhhhhcccc-ccCCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChh
Q 006160 548 WHLWERKSSAR-ENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 626 (658)
Q Consensus 548 w~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~ 626 (658)
||. |++.+ +++|.|.++ .++++++.+.+++.+.+++|||+|||+++|+.+.. +++|||++|||++
T Consensus 611 w~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~----~~~vgvlv~gp~~ 676 (702)
T PLN02292 611 WNK---KKYYKKSSQQVDNVD-------SPREIESSPQQLLVQRTNIHYGERPNLNKLLVGLK----GSSVGVLVCGPKK 676 (702)
T ss_pred hcc---cccccchhccccccc-------cccccccCcccccccceeeeccCCCCHHHHHHhcC----CCceeEEEECcHH
Confidence 865 44433 555555543 34777888888898899999999999999996553 4699999999999
Q ss_pred hHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 627 LQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 627 m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
|+++||++|++.+ ++| |||||.|||
T Consensus 677 ~~~~va~~c~s~~----~~~--~~~~s~sf~ 701 (702)
T PLN02292 677 MRQKVAKICSSGL----AEN--LHFESISFS 701 (702)
T ss_pred HHHHHHHHHhcCC----Ccc--eeEEeeccc
Confidence 9999999999955 444 999999998
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=1.4e-85 Score=753.86 Aligned_cols=497 Identities=32% Similarity=0.598 Sum_probs=406.1
Q ss_pred ccccc--chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcch
Q 006160 4 DTMYG--WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQ 74 (658)
Q Consensus 4 ~~~~~--~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE 74 (658)
|..|. ..+|||+| +.|+++|++.|...+.+.+++..|..++..+++|++|++++++|+++|++++||++||
T Consensus 185 Gis~e~~i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YE 264 (722)
T PLN02844 185 GIQFEASVRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFE 264 (722)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhH
Confidence 44455 46999999 3578888888988877745677887766678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcE
Q 006160 75 LFFYTHQLYVVFVVFLALHVGDFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSF 154 (658)
Q Consensus 75 ~F~~~H~l~ilflv~l~~H~~~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~ 154 (658)
+|+++|+++++|++++++|+...+.+|+++++++|++||++|.++++....+++++.+++++++++++++..++|+||||
T Consensus 265 lF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQf 344 (722)
T PLN02844 265 IFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSV 344 (722)
T ss_pred HHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhheEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCee
Confidence 99999999998999999999876667899999999999999999887666677888899999999999988899999999
Q ss_pred EEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 006160 155 FFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPV 234 (658)
Q Consensus 155 v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (658)
++|++|..+++|||||||+|+|..+++.++++||+.|+||++|++.+....+.+.
T Consensus 345 V~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~~g~------------------------- 399 (722)
T PLN02844 345 IFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSET------------------------- 399 (722)
T ss_pred EEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhccCCC-------------------------
Confidence 9999999999999999999987544578999999999999999998754321100
Q ss_pred ccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q 006160 235 RNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVV 314 (658)
Q Consensus 235 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (658)
T Consensus 400 -------------------------------------------------------------------------------- 399 (722)
T PLN02844 400 -------------------------------------------------------------------------------- 399 (722)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHH
Q 006160 315 AGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSD 394 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ 394 (658)
... .+.++.||||||....+..++++++|||||+||||++|++++
T Consensus 400 ------------------------------~~~-----~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrd 444 (722)
T PLN02844 400 ------------------------------NQM-----NCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKE 444 (722)
T ss_pred ------------------------------Ccc-----cceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHH
Confidence 000 235799999999876555678999999999999999999999
Q ss_pred HHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCC------Ccccccccccc
Q 006160 395 ILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL------EEGELHKTMSS 468 (658)
Q Consensus 395 ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~------~~~~~~~~~v~ 468 (658)
+.++.+.. ....++|+|+|++|+.+|+.|++++..++... ..+..++++++||||++.+.. +++...++ .
T Consensus 445 l~~~~~~~-~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~-~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~--~ 520 (722)
T PLN02844 445 IASQSSSR-YRFPKRVQLIYVVKKSQDICLLNPISSLLLNQ-SSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQT--V 520 (722)
T ss_pred HHhccccc-cCCCCcEEEEEEECCHHHhhhHHHHHHHhHHh-HHHhcCceEEEEECCCCCCCCchhhHhhccchhhh--c
Confidence 98754211 12346899999999999999999887554322 123357999999999876422 11122222 3
Q ss_pred cccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCCCcc--------------------hhhHHHH
Q 006160 469 SIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHS--------------------WWYKGLL 528 (658)
Q Consensus 469 ~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~~~~--------------------~~~~~~l 528 (658)
.+.| +...+++|||++|+|++++|++||++||+++|+++|||| |+|..+ ||+++++
T Consensus 521 ~~~~---~~~~~~i~G~~~~lw~~~~~~~s~~~f~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 596 (722)
T PLN02844 521 NFST---KCSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFI-PSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLL 596 (722)
T ss_pred CCCC---CCCceEEeCCCchHHHHHHHHHHHHHHHHHHHHHheEEe-ccccccccchhcccccccccccCCCchHHHHHH
Confidence 3444 345599999999999999999999999999999999999 666333 9999999
Q ss_pred HHHHHhhheeeccceeeeeehhhhhhcccccc-CCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHh
Q 006160 529 FLACMVGGVLIFGGTVIGFWHLWERKSSAREN-YKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGS 607 (658)
Q Consensus 529 ~~~~~~~~v~i~g~~~~~~w~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~ 607 (658)
++++|++||++ ||+|+.+|+ |+|++++.++ ++++.++.. ++.++ ...++.+.+++|||+|||+++|+++
T Consensus 597 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~g~rp~~~~i~~~ 666 (722)
T PLN02844 597 LIVSFIIAITC-STFVAIILR-WRRLKKEIPRVSQKQGIKPE----EGSME----KRGPVLEEHEIHFGGRPNFQDIFSK 666 (722)
T ss_pred HHHHHHHHhee-cceEeEeee-ccccccCCccccccccCCCC----Ccccc----ccccccccceeecCCCCCHHHHHHH
Confidence 99999999988 999999999 8888877654 344444321 11122 2234556689999999999999999
Q ss_pred hhccCCCceEEEEEeCChhhHHHHHHHHHhccc-----CCCCCCceEEEEecccCC
Q 006160 608 TSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSL-----MRECHDPIFHFHSHSFDL 658 (658)
Q Consensus 608 ~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~~~-----~~~~~~~~~~fhsesF~l 658 (658)
..++.++++|||++|||++|+++||++||++|+ .+.+.++.|||||.||||
T Consensus 667 ~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 667 FPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGDDGKRKMYFSFHSLNFTL 722 (722)
T ss_pred hhhhccCCceeEEEeCchHHHHHHHHHHHhcccccccccccccCCceeeeecccCC
Confidence 999888999999999999999999999999998 555667889999999997
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-61 Score=552.86 Aligned_cols=394 Identities=31% Similarity=0.561 Sum_probs=316.5
Q ss_pred chhhhhhh-------hHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHH
Q 006160 9 WDILRWCS-------LRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQ 81 (658)
Q Consensus 9 ~~~HRW~a-------~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~ 81 (658)
-.+|+|.+ ..|++.|++.|++.+....+...|...+..+++|+++++++++|+++|++++||+.||+||++|+
T Consensus 231 ~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~ 310 (646)
T KOG0039|consen 231 ILLHIWLHLVNFFPFLVHGLEYTISLASELFFLPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHH 310 (646)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35899998 35688999999998755445567777788899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcc-----hhHHHHHHHHHHHHHHHHHhhhccccceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEE
Q 006160 82 LYVVFVVFLALHVG-----DFVFSMAAGGIFLFILDRFLRFCQSRRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFF 156 (658)
Q Consensus 82 l~ilflv~l~~H~~-----~~~~~~~~~~i~l~~~Dr~~R~~r~~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~ 156 (658)
+++++++++++|+. ..| .|++.++++|++||++|+.|++.+++++++..+|+++++|++++|+.++|+||||+|
T Consensus 311 l~~v~~illi~hg~~~~~~~~w-~~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyif 389 (646)
T KOG0039|consen 311 LYIVFYILLIIHGGFRLLGTTW-MYIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIF 389 (646)
T ss_pred HHHHHHHHHHHHhcccccccch-hHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEE
Confidence 99999999999987 444 455555889999999999998778999999999999999999999999999999999
Q ss_pred EEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 006160 157 LQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRN 236 (658)
Q Consensus 157 L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (658)
|++|.++.+|||||||+|+|+ +++++++||++||||++|++.+.+...+. +
T Consensus 390 v~~p~ls~~qwHPFTItSsp~--dd~lsvhIk~~g~wT~~L~~~~~~~~~~~-----------~---------------- 440 (646)
T KOG0039|consen 390 VNCPSLSKLEWHPFTITSAPE--DDFLSVHIKALGDWTEKLRNAFSEVSQPP-----------E---------------- 440 (646)
T ss_pred EECccccccccCCceeecCCC--CCEEEEEEEecCcHHHHHHHHHhhhcccc-----------c----------------
Confidence 999999999999999999994 38999999999999999999987422100 0
Q ss_pred chhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcC
Q 006160 237 LMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAG 316 (658)
Q Consensus 237 ~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (658)
T Consensus 441 -------------------------------------------------------------------------------- 440 (646)
T KOG0039|consen 441 -------------------------------------------------------------------------------- 440 (646)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHH
Q 006160 317 GISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDIL 396 (658)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll 396 (658)
.. ... ...++.||||||...+++.+|++++|||||+|+||++|++++++
T Consensus 441 --------------------~~------~~~-----~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~ 489 (646)
T KOG0039|consen 441 --------------------SD------KSY-----PFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLL 489 (646)
T ss_pred --------------------cc------ccc-----cCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHH
Confidence 00 000 12479999999999988899999999999999999999999999
Q ss_pred HhhccCC----------CCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccc
Q 006160 397 HRINEGK----------SCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTM 466 (658)
Q Consensus 397 ~~~~~~~----------~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~ 466 (658)
.+.+.++ ....++++|+|.+|+..+++|+.+++.+... .....-++++.|+|+..+. .+..+++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~--~~~~~~~e~~~~~t~~~~~----~d~~~~~ 563 (646)
T KOG0039|consen 490 NKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEE--YDSSGVIELHNYVTSSYEE----GDARSAL 563 (646)
T ss_pred hhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHH--HHhcCCchhheehhHhHhh----hhhhhHH
Confidence 9876543 2467899999999999999999999877542 1223348899999976531 1111110
Q ss_pred cccccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheecCCCCCcchhhHHHHHHHHHhhheeeccceeee
Q 006160 467 SSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIG 546 (658)
Q Consensus 467 v~~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i~p~~~~~~~~~~~l~~~~~~~~v~i~g~~~~~ 546 (658)
+-|+..
T Consensus 564 ----------------------------------------------------------------~~~~~~---------- 569 (646)
T KOG0039|consen 564 ----------------------------------------------------------------IQMVQK---------- 569 (646)
T ss_pred ----------------------------------------------------------------HHHHHh----------
Confidence 011000
Q ss_pred eehhhhhhccccccCCCCccccccccccccccccccccccCcccceeecCCCCCHHHHHHhhhccCCCceEEEEEeCChh
Q 006160 547 FWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNILYGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPS 626 (658)
Q Consensus 547 ~w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~ 626 (658)
..+++..+++ .+++. ..+|+ |||||++++++.++.+++.+||||+|||++
T Consensus 570 ----------~~~~~~~~di-----------------~~g~~--~~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~ 619 (646)
T KOG0039|consen 570 ----------LLHAKNGVDI-----------------VTGLK--VETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPG 619 (646)
T ss_pred ----------hcccccCccc-----------------cccce--eeeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHH
Confidence 0011111111 13333 45666 899999999999999988889999999999
Q ss_pred hHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160 627 LQSSVAKEIRSHSLMRECHDPIFHFHSHSF 656 (658)
Q Consensus 627 m~~~V~~~~~~~~~~~~~~~~~~~fhsesF 656 (658)
|+++|++.|++++.. +.+.|+||+|||
T Consensus 620 l~~~~~~~~~~~~~~---~~~~~~f~~E~F 646 (646)
T KOG0039|consen 620 LVKELRKLCNDFSSS---TATRFEFHKENF 646 (646)
T ss_pred HHHHHHHHHHhcccc---cCceeeeeeccC
Confidence 999999999998865 346699999998
No 5
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=1.3e-28 Score=245.84 Aligned_cols=158 Identities=30% Similarity=0.542 Sum_probs=126.9
Q ss_pred EEEEEec-CceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160 127 LSASCLP-CGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 204 (658)
Q Consensus 127 ~sv~~l~-~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~ 204 (658)
++++.++ +++++|+++.+..+.|+||||++|++|.. +.+++|||||+|.+.++.+.++|+||..+++|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999988889999999999999987 789999999999986434899999999955666666665432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (210)
T cd06186 82 PGG----------------------------------------------------------------------------- 84 (210)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
+...++.|+||||
T Consensus 85 -------------------------------------------------------------------~~~~~v~v~GP~G 97 (210)
T cd06186 85 -------------------------------------------------------------------GVSLKVLVEGPYG 97 (210)
T ss_pred -------------------------------------------------------------------CceeEEEEECCCC
Confidence 0224688999999
Q ss_pred CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHH
Q 006160 365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYK 430 (658)
Q Consensus 365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ 430 (658)
........++++||||||+||||+++++++++++.++ ....++|+|+|++|+.+++.|+.+.+.
T Consensus 98 ~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~~~~~l~ 161 (210)
T cd06186 98 SSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEWFLDELR 161 (210)
T ss_pred CCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHHHHHHHH
Confidence 9763446789999999999999999999999876531 112468999999999999888877664
No 6
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.4e-27 Score=249.37 Aligned_cols=248 Identities=22% Similarity=0.271 Sum_probs=174.7
Q ss_pred hhhcchHHHHHHHHHHHHhhhhhhhcchh---------HHHH-----HHHHHHHHHHHHHhhhccc-cceEEEEEEEEec
Q 006160 69 RKHFFQLFFYTHQLYVVFVVFLALHVGDF---------VFSM-----AAGGIFLFILDRFLRFCQS-RRTVDVLSASCLP 133 (658)
Q Consensus 69 Rr~~YE~F~~~H~l~ilflv~l~~H~~~~---------~~~~-----~~~~i~l~~~Dr~~R~~r~-~~~~~v~sv~~l~ 133 (658)
-+--||.|.++|.++++.+++..+|.-.. ...| .+.+..++......+..++ +....++..+..+
T Consensus 148 ~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~ 227 (438)
T COG4097 148 LNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGN 227 (438)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcC
Confidence 35589999999999999999999997421 0112 2222222222222333333 3456777788888
Q ss_pred CceEEEEEeCCCCCCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCC
Q 006160 134 CGTVELVLSKPANLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG 212 (658)
Q Consensus 134 ~~v~~l~i~~p~~~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~ 212 (658)
.+++++++...+.+.++||||.||.++. .++.-.||||||++.+. .++.|.||+.||+|+.|++.++..
T Consensus 228 ~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~LGD~Tk~l~dnLk~G-------- 297 (438)
T COG4097 228 VDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKALGDFTKTLKDNLKVG-------- 297 (438)
T ss_pred cchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehhhhhhhHHHHHhccCC--------
Confidence 8899999988877889999999999984 34567899999999764 589999999999999997754211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP 292 (658)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
T Consensus 298 -------------------------------------------------------------------------------- 297 (438)
T COG4097 298 -------------------------------------------------------------------------------- 297 (438)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccc
Q 006160 293 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM 372 (658)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~ 372 (658)
+ ++.||||||.+..+ ..
T Consensus 298 ------------------------------------------------------------~--k~~vdGPYG~F~~~-~g 314 (438)
T COG4097 298 ------------------------------------------------------------T--KLEVDGPYGKFDFE-RG 314 (438)
T ss_pred ------------------------------------------------------------c--eEEEecCcceeecc-cC
Confidence 2 58899999986433 23
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~ 452 (658)
-.+-|.||||||||||+|.++++..+. ..+.|+|++++|+.++..+.+++. ++. .+..++++|+. ++.
T Consensus 315 ~~~QVWIAGGIGITPFis~l~~l~~~~------s~~~V~L~Y~~~n~e~~~y~~eLr-~~~----qkl~~~~lHii-DSs 382 (438)
T COG4097 315 LNTQVWIAGGIGITPFISMLFTLAERK------SDPPVHLFYCSRNWEEALYAEELR-ALA----QKLPNVVLHII-DSS 382 (438)
T ss_pred CcccEEEecCcCcchHHHHHHhhcccc------cCCceEEEEEecCCchhHHHHHHH-HHH----hcCCCeEEEEe-cCC
Confidence 345999999999999999999997633 246799999999999998776653 321 24567888772 222
Q ss_pred CCCCCCcccccccccccccCCCCCCceeEeecCCC
Q 006160 453 TEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGN 487 (658)
Q Consensus 453 ~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~ 487 (658)
. ++.+.++.+++. |...-......|||..
T Consensus 383 ~-----~g~l~~e~ler~-~~~~~~~sv~fCGP~~ 411 (438)
T COG4097 383 K-----DGYLDQEDLERY-PDRPRTRSVFFCGPIK 411 (438)
T ss_pred C-----CCccCHHHhhcc-ccccCcceEEEEcCHH
Confidence 2 233333444444 3322233678999983
No 7
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.91 E-value=1.3e-22 Score=205.94 Aligned_cols=166 Identities=19% Similarity=0.291 Sum_probs=127.4
Q ss_pred eEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~ 198 (658)
.++|.+++.+.+++++++++.+. .+.|+||||+.|+++... ++|||||+|.|.+ .+.++|+||.. |.+|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPAD-PGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCC-CCEEEEEEEECCCCchhhHHh
Confidence 46788899999999999887543 578999999999998533 7899999999864 47899999997 77887775
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
+.+..
T Consensus 79 ~~l~~--------------------------------------------------------------------------- 83 (232)
T cd06212 79 DGLAV--------------------------------------------------------------------------- 83 (232)
T ss_pred hcCCC---------------------------------------------------------------------------
Confidence 43210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160 279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358 (658)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 358 (658)
+. ++.
T Consensus 84 -------------------------------------------------------------------------G~--~v~ 88 (232)
T cd06212 84 -------------------------------------------------------------------------GD--PVT 88 (232)
T ss_pred -------------------------------------------------------------------------CC--EEE
Confidence 12 477
Q ss_pred EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
++||||........+++++|||||+||||++++++++.++.. .++|+|+|++|+.+++.+.+++ +++. .
T Consensus 89 i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~----~ 157 (232)
T cd06212 89 VTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGS------DRPVRFFYGARTARDLFYLEEI-AALG----E 157 (232)
T ss_pred EEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCC------CCcEEEEEeccchHHhccHHHH-HHHH----H
Confidence 999999876543457899999999999999999999987531 3579999999999998765544 3332 1
Q ss_pred CCCceEEEEEEcCC
Q 006160 439 DKLNLETFIYVTRE 452 (658)
Q Consensus 439 ~~~~l~I~iyVT~~ 452 (658)
...+++++.+++++
T Consensus 158 ~~~~~~~~~~~s~~ 171 (232)
T cd06212 158 KIPDFTFIPALSES 171 (232)
T ss_pred hCCCEEEEEEECCC
Confidence 23467776677654
No 8
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.90 E-value=2.7e-22 Score=205.54 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=132.5
Q ss_pred cccceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--C
Q 006160 119 QSRRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--G 191 (658)
Q Consensus 119 r~~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G 191 (658)
|.++..++.+++.+++++.++++..+.. +.|+||||+.|.++..+ ...+|||||+|.+.+ +.++|.||.. |
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~~G 81 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREPGG 81 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcCCC
Confidence 3445678899999999999999987653 68999999999997433 568899999999864 5999999998 8
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCC
Q 006160 192 EWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPP 271 (658)
Q Consensus 192 ~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 271 (658)
.+|+.|.+.+.
T Consensus 82 ~~s~~l~~~~~--------------------------------------------------------------------- 92 (247)
T cd06184 82 LVSNYLHDNVK--------------------------------------------------------------------- 92 (247)
T ss_pred cchHHHHhcCC---------------------------------------------------------------------
Confidence 88888754221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 272 GPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLP 351 (658)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (658)
+
T Consensus 93 -------------------------------------------------------------------------------~ 93 (247)
T cd06184 93 -------------------------------------------------------------------------------V 93 (247)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHh
Q 006160 352 PTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKE 431 (658)
Q Consensus 352 ~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~e 431 (658)
++ ++.|+||||........+++++|||||+||||+++++++++++. ..++++|+|++|+.+++.+.++ +.+
T Consensus 94 Gd--~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~~~r~~~~~~~~~~-l~~ 164 (247)
T cd06184 94 GD--VLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIHAARNSAVHAFRDE-LEE 164 (247)
T ss_pred CC--EEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEEEcCchhhHHHHHH-HHH
Confidence 12 47799999986443236789999999999999999999998753 1357999999999999865444 333
Q ss_pred ccCCccCCCCceEEEEEEcCCC
Q 006160 432 SICPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 432 ll~~~~~~~~~l~I~iyVT~~~ 453 (658)
+. ....++++++++++..
T Consensus 165 l~----~~~~~~~~~~~~s~~~ 182 (247)
T cd06184 165 LA----ARLPNLKLHVFYSEPE 182 (247)
T ss_pred HH----hhCCCeEEEEEECCCC
Confidence 32 2335788888888653
No 9
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.90 E-value=2.6e-22 Score=203.24 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=128.1
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
+.+|.+++.+++++++++++.+..+.|+||||++|+++... .+|||||+|++.+ .+.++|+||.. |.+|+.|++.
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~ 78 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQG-DGQLSFHIRKVPGGAFSGWLFGA 78 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCC-CCEEEEEEEECCCCcchHHHHhc
Confidence 35788889999999999999877789999999999997543 6799999999864 47899999987 8899988654
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++.
T Consensus 79 l~~----------------------------------------------------------------------------- 81 (227)
T cd06213 79 DRT----------------------------------------------------------------------------- 81 (227)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
++ ++.|+
T Consensus 82 -----------------------------------------------------------------------G~--~v~i~ 88 (227)
T cd06213 82 -----------------------------------------------------------------------GE--RLTVR 88 (227)
T ss_pred -----------------------------------------------------------------------CC--EEEEe
Confidence 02 47799
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||..... ...++++|||||+||||+++++++++++.. .++|+++|++|+.+++.+.+++. ++.. ...
T Consensus 89 gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~~~~l~-~l~~---~~~ 157 (227)
T cd06213 89 GPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGT------KRDVTLLFGARTQRDLYALDEIA-AIAA---RWR 157 (227)
T ss_pred CCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCC------CCcEEEEEeeCCHHHhccHHHHH-HHHH---hcc
Confidence 999987543 345799999999999999999999986531 35799999999999986554443 3221 112
Q ss_pred CceEEEEEEcCC
Q 006160 441 LNLETFIYVTRE 452 (658)
Q Consensus 441 ~~l~I~iyVT~~ 452 (658)
.+++++.+++++
T Consensus 158 ~~~~~~~~~s~~ 169 (227)
T cd06213 158 GRFRFIPVLSEE 169 (227)
T ss_pred CCeEEEEEecCC
Confidence 457777777664
No 10
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.90 E-value=2.6e-22 Score=205.08 Aligned_cols=165 Identities=23% Similarity=0.272 Sum_probs=128.5
Q ss_pred EEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHh
Q 006160 126 VLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL 202 (658)
Q Consensus 126 v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~ 202 (658)
|++++.+++++++++++.+..+.|+||||+.|+++.. +...+|||||+|.+.+ +.++|+||+. |.+|+.|.++ .
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~~G~~s~~l~~l-~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVPDGPLTPRLFKL-K 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEecCCCCchHHhcC-C
Confidence 5677888899999999987778899999999999875 6778899999999864 7999999976 8888877421 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 79 ~------------------------------------------------------------------------------- 79 (241)
T cd06195 79 P------------------------------------------------------------------------------- 79 (241)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE-C
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE-G 361 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve-G 361 (658)
++ ++.+. |
T Consensus 80 ---------------------------------------------------------------------Gd--~v~v~~g 88 (241)
T cd06195 80 ---------------------------------------------------------------------GD--TIYVGKK 88 (241)
T ss_pred ---------------------------------------------------------------------CC--EEEECcC
Confidence 12 47788 9
Q ss_pred ccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCC-
Q 006160 362 PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSD- 439 (658)
Q Consensus 362 PyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~- 439 (658)
|+|.+..... ..++++|||||+||||+++++++++... ..++|+|+|++|+.+++.+.+++ .++. .+
T Consensus 89 P~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~d~~~~~el-~~l~----~~~ 157 (241)
T cd06195 89 PTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAEELAYQDEI-EALA----KQY 157 (241)
T ss_pred CCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHHHhhhHHHH-HHHH----hhc
Confidence 9998643323 4689999999999999999999997543 13589999999999999655443 3432 12
Q ss_pred CCceEEEEEEcCCCC
Q 006160 440 KLNLETFIYVTRETE 454 (658)
Q Consensus 440 ~~~l~I~iyVT~~~~ 454 (658)
..+++++.++|++++
T Consensus 158 ~~~~~~~~~~s~~~~ 172 (241)
T cd06195 158 NGKFRYVPIVSREKE 172 (241)
T ss_pred CCCEEEEEEECcCCc
Confidence 357888888887654
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.90 E-value=3.3e-22 Score=202.52 Aligned_cols=165 Identities=23% Similarity=0.295 Sum_probs=129.4
Q ss_pred eEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~ 198 (658)
.++|++++.+++++++++++.+. .+.|+||||+.|+++.. .++|||||+|.+.+ +.++|+||.. |.+|+.|.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ysi~s~~~~--~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGD--PRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCC--CcccccccccCCCC--CeEEEEEEEcCCCcchhhHH
Confidence 46788999999999999999876 58999999999999853 35799999998864 7899999986 77888775
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
+.++.
T Consensus 79 ~~l~~--------------------------------------------------------------------------- 83 (228)
T cd06209 79 DRAQP--------------------------------------------------------------------------- 83 (228)
T ss_pred hccCC---------------------------------------------------------------------------
Confidence 53210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160 279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358 (658)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 358 (658)
++ ++.
T Consensus 84 -------------------------------------------------------------------------G~--~v~ 88 (228)
T cd06209 84 -------------------------------------------------------------------------GD--RLT 88 (228)
T ss_pred -------------------------------------------------------------------------CC--EEE
Confidence 12 467
Q ss_pred EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
|+||||..... ...++++|||||+||||+++++++++.+. ..++++|+|++|+.+++.+.+++. ++. .
T Consensus 89 v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~-~l~----~ 156 (228)
T cd06209 89 LTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTRDADLVELDRLE-ALA----E 156 (228)
T ss_pred EECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCCHHHhccHHHHH-HHH----H
Confidence 99999987543 34478999999999999999999998654 135799999999999987655443 332 2
Q ss_pred CCCceEEEEEEcCCC
Q 006160 439 DKLNLETFIYVTRET 453 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~ 453 (658)
...+++++.++|+++
T Consensus 157 ~~~~~~~~~~~s~~~ 171 (228)
T cd06209 157 RLPGFSFRTVVADPD 171 (228)
T ss_pred hCCCeEEEEEEcCCC
Confidence 345688888888754
No 12
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=2.8e-22 Score=201.44 Aligned_cols=137 Identities=33% Similarity=0.507 Sum_probs=109.6
Q ss_pred CceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcCCCCCCCC
Q 006160 134 CGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKSESDSQVG 212 (658)
Q Consensus 134 ~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~~~~~~~~ 212 (658)
.++++++++.+.. +.|+||||++|+++..+.+++|||||+|.+.+ ++.++|+||..|++|+.|.+.+..
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~G~~t~~l~~~l~~--------- 76 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKALGDYTRRLAERLKP--------- 76 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEeCChHHHHHHHhCCC---------
Confidence 4567777765544 78999999999998766788999999999864 379999999999999988744311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 213 PPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPP 292 (658)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
T Consensus 77 -------------------------------------------------------------------------------- 76 (216)
T cd06198 77 -------------------------------------------------------------------------------- 76 (216)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccc
Q 006160 293 QGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLM 372 (658)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~ 372 (658)
+. ++.|+||||..... ..
T Consensus 77 -----------------------------------------------------------G~--~v~i~gP~G~~~~~-~~ 94 (216)
T cd06198 77 -----------------------------------------------------------GT--RVTVEGPYGRFTFD-DR 94 (216)
T ss_pred -----------------------------------------------------------CC--EEEEECCCCCCccc-cc
Confidence 01 47799999986443 23
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
+++++|||||+||||+++++++++++.. .++++|+|++|+.+++.+.+++
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l 144 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGD------ARPVTLFYCVRDPEDAVFLDEL 144 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCC------CceEEEEEEECCHHHhhhHHHH
Confidence 7899999999999999999999986541 3689999999999988665544
No 13
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.89 E-value=7.4e-22 Score=200.33 Aligned_cols=166 Identities=22% Similarity=0.292 Sum_probs=128.7
Q ss_pred EEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 125 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
+|++++.+++++.+++++.+.. +.|+||||++|.++..+...+|||||+|.+. .++++|.||.. |.+|+.|++.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 5778888999999999987654 6899999999999755566789999999986 37899999998 7788887543
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++.
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (231)
T cd06191 80 IQP----------------------------------------------------------------------------- 82 (231)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
++ ++.|+
T Consensus 83 -----------------------------------------------------------------------Gd--~v~i~ 89 (231)
T cd06191 83 -----------------------------------------------------------------------GM--TVEVM 89 (231)
T ss_pred -----------------------------------------------------------------------CC--EEEEe
Confidence 12 47799
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||.........++++|||||+||||+++++++++.... .++++|+|++|+.+++.+.+++ .++. .+.
T Consensus 90 gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~ 158 (231)
T cd06191 90 GPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAP------ESDFTLIHSARTPADMIFAQEL-RELA----DKP 158 (231)
T ss_pred CCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHHHH-HHHH----HhC
Confidence 9999864332356799999999999999999999976431 3579999999999998665544 3332 234
Q ss_pred CceEEEEEEcCCC
Q 006160 441 LNLETFIYVTRET 453 (658)
Q Consensus 441 ~~l~I~iyVT~~~ 453 (658)
.+++++.++|+++
T Consensus 159 ~~~~~~~~~s~~~ 171 (231)
T cd06191 159 QRLRLLCIFTRET 171 (231)
T ss_pred CCeEEEEEECCCC
Confidence 5788888888764
No 14
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.89 E-value=7e-22 Score=212.23 Aligned_cols=166 Identities=19% Similarity=0.314 Sum_probs=128.7
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 197 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L 197 (658)
...+|++++.+++++++++++.+. .+.|+||||+.|.++.. ++|||||+|.+.+ .+.++|+||.. |.+|+.|
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHS-GGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCC-CCEEEEEEEecCCCccHHHH
Confidence 357888899999999999998763 47999999999999752 5799999999864 47999999986 7888888
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 277 (658)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (658)
++.++.
T Consensus 179 ~~~l~~-------------------------------------------------------------------------- 184 (339)
T PRK07609 179 FGALKE-------------------------------------------------------------------------- 184 (339)
T ss_pred HHhccC--------------------------------------------------------------------------
Confidence 664311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160 278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 357 (658)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 357 (658)
+. ++
T Consensus 185 --------------------------------------------------------------------------G~--~v 188 (339)
T PRK07609 185 --------------------------------------------------------------------------RD--IL 188 (339)
T ss_pred --------------------------------------------------------------------------CC--EE
Confidence 12 47
Q ss_pred EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160 358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 437 (658)
Q Consensus 358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~ 437 (658)
.++||||.+.......+++||||||+||||++++++++++.. ..++|+|+|++|+.+++. +++.+.++.
T Consensus 189 ~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~~~dl~-~~e~l~~~~---- 257 (339)
T PRK07609 189 RIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARRPEDLY-LSALAEQWA---- 257 (339)
T ss_pred EEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCChHHhc-cHHHHHHHH----
Confidence 799999997654346689999999999999999999998643 135799999999999984 344443332
Q ss_pred CCCCceEEEEEEcCC
Q 006160 438 SDKLNLETFIYVTRE 452 (658)
Q Consensus 438 ~~~~~l~I~iyVT~~ 452 (658)
.+..+++++..++++
T Consensus 258 ~~~~~~~~~~~~s~~ 272 (339)
T PRK07609 258 EELPNFRYVPVVSDA 272 (339)
T ss_pred HhCCCeEEEEEecCC
Confidence 234468887778775
No 15
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.89 E-value=7.9e-22 Score=201.80 Aligned_cols=212 Identities=20% Similarity=0.265 Sum_probs=154.3
Q ss_pred HHHHhhhccc-----cceEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEE
Q 006160 111 LDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSS 184 (658)
Q Consensus 111 ~Dr~~R~~r~-----~~~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~ls 184 (658)
+||++|+++. ...+++++++.+++++++++++.+.. ..|+||||++|.++..+...+|||||+|.+..+.+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 5888888654 13577888999999999999997654 58999999999998666677899999999851237899
Q ss_pred EEEEEc--CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCC
Q 006160 185 VLIKVL--GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPV 262 (658)
Q Consensus 185 l~IR~~--G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 262 (658)
|+||.. |.+|+.|.+.++.
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~~----------------------------------------------------------- 102 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLAP----------------------------------------------------------- 102 (243)
T ss_pred EEEEEcCCCcchhHHHhcCCC-----------------------------------------------------------
Confidence 999998 8899888553210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 006160 263 PPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRP 342 (658)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (658)
T Consensus 103 -------------------------------------------------------------------------------- 102 (243)
T cd06216 103 -------------------------------------------------------------------------------- 102 (243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcch
Q 006160 343 PPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 422 (658)
Q Consensus 343 ~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl 422 (658)
++ ++.|+||||........+++++|||||+||||++++++++.+.. ..+++.++|++|+.+++
T Consensus 103 ---------Gd--~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r~~~~~ 165 (243)
T cd06216 103 ---------GD--VVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYARTREDV 165 (243)
T ss_pred ---------CC--EEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcCChhhh
Confidence 12 47799999985433234789999999999999999999997653 13579999999999988
Q ss_pred hhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 423 SLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 423 ~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+.+++ +++. .+..+++++.++|++ . ..+.+....+....+.. +...+.+|||++.
T Consensus 166 ~~~~el-~~l~----~~~~~~~~~~~~s~~-~---~~g~~~~~~l~~~~~~~-~~~~vyvcGp~~m 221 (243)
T cd06216 166 IFADEL-RALA----AQHPNLRLHLLYTRE-E---LDGRLSAAHLDAVVPDL-ADRQVYACGPPGF 221 (243)
T ss_pred HHHHHH-HHHH----HhCCCeEEEEEEcCC-c---cCCCCCHHHHHHhccCc-ccCeEEEECCHHH
Confidence 554443 3332 234568888888875 1 12222222233333322 3468899999854
No 16
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.89 E-value=1.1e-21 Score=198.38 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=145.8
Q ss_pred EEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHh
Q 006160 125 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYIL 202 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~ 202 (658)
++++++.+++++++++++.+..+.|+||||++|.++.. .+|||||+|.+.+ ++.++|+||.. |.+|++|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHE-DGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCC-CCeEEEEEEecCCCccHHHHHHhcc
Confidence 57788889999999999987778999999999999753 4799999999864 47999999998 789998876431
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (224)
T cd06189 78 E------------------------------------------------------------------------------- 78 (224)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP 362 (658)
++ ++.|+||
T Consensus 79 ---------------------------------------------------------------------G~--~v~i~gP 87 (224)
T cd06189 79 ---------------------------------------------------------------------NG--LVRIEGP 87 (224)
T ss_pred ---------------------------------------------------------------------CC--EEEEecC
Confidence 02 4779999
Q ss_pred cCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCc
Q 006160 363 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN 442 (658)
Q Consensus 363 yG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~ 442 (658)
||........+++++|||||+||||+++++++++.+. ..++++|+|++|+.+++.+.+++ +++. .+..+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~~l-~~l~----~~~~~ 156 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDLYLDELL-EAWA----EAHPN 156 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhccCHHHH-HHHH----HhCCC
Confidence 9987654345789999999999999999999998754 13579999999999998665544 3332 23457
Q ss_pred eEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160 443 LETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 443 l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+++..+++++++.+. ..+.+...+.... +. .+...+.+|||+..
T Consensus 157 ~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~-~~~~~v~vCGp~~m 201 (224)
T cd06189 157 FTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PD-LSDFDVYACGSPEM 201 (224)
T ss_pred eEEEEEeCCCCcCCccccccHHHHHHhhc-cC-ccccEEEEECCHHH
Confidence 888888887643222 2222222222222 21 23467899999965
No 17
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.88 E-value=1.8e-21 Score=196.94 Aligned_cols=201 Identities=14% Similarity=0.211 Sum_probs=147.4
Q ss_pred EEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 125 DVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
++++++.+++++++++++.+.. +.|+||||++|+++..+...+|||||+|.+.+ .+.++|+||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcCCCcchHHHHhc
Confidence 5778888999999999998865 79999999999998666667899999999864 46799999998 8888877543
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
+..
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (231)
T cd06215 81 LKV----------------------------------------------------------------------------- 83 (231)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
+. ++.|+
T Consensus 84 -----------------------------------------------------------------------G~--~v~i~ 90 (231)
T cd06215 84 -----------------------------------------------------------------------GD--ELWAS 90 (231)
T ss_pred -----------------------------------------------------------------------CC--EEEEE
Confidence 12 47799
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||.+.......++++|||||+||||++++++++++... .++|+|+|++|+.+++.+.+++ +++. .+.
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~----~~~ 159 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRP------DADIVFIHSARSPADIIFADEL-EELA----RRH 159 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCcEEEEEecCChhhhhHHHHH-HHHH----HHC
Confidence 9999865332347899999999999999999999976431 3579999999999998765544 3332 233
Q ss_pred CceEEEEEEcCCCC--CCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 441 LNLETFIYVTRETE--PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 441 ~~l~I~iyVT~~~~--~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.++++++++|++++ +....+.+....+....+... ...+.+|||++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~v~icGp~~m 208 (231)
T cd06215 160 PNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLK-ERTVFVCGPAGF 208 (231)
T ss_pred CCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCcc-CCeEEEECCHHH
Confidence 56899999998654 212223333322333333332 346789999966
No 18
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.88 E-value=6.4e-21 Score=194.39 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=127.5
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC----CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN----LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~----~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
.+++++++.+++++++++++.+.. +.|+||||+.|.++..+...+||||++|.+.+ +.++|+||.. |..|..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcCCCccchh
Confidence 467889999999999999998754 58999999999998656678899999998864 4899999997 677877
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|.+.+..
T Consensus 81 l~~~~~~------------------------------------------------------------------------- 87 (241)
T cd06214 81 ANDELKA------------------------------------------------------------------------- 87 (241)
T ss_pred HHhccCC-------------------------------------------------------------------------
Confidence 7432210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
+. +
T Consensus 88 ---------------------------------------------------------------------------G~--~ 90 (241)
T cd06214 88 ---------------------------------------------------------------------------GD--T 90 (241)
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 12 4
Q ss_pred EEEECccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160 357 ASVEGPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435 (658)
Q Consensus 357 v~veGPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~ 435 (658)
+.|.||+|....... .+++++|||||+||||+++++++++.... .++++|+|++|+.+++.+.+++ .++.+
T Consensus 91 v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~~- 162 (241)
T cd06214 91 LEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP------ASRVTLVYGNRTEASVIFREEL-ADLKA- 162 (241)
T ss_pred EEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhHHHHH-HHHHH-
Confidence 679999998754433 57899999999999999999999886531 3579999999999998555443 33321
Q ss_pred ccCCCCceEEEEEEcCC
Q 006160 436 FFSDKLNLETFIYVTRE 452 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~ 452 (658)
....++++..++|++
T Consensus 163 --~~~~~~~~~~~~~~~ 177 (241)
T cd06214 163 --RYPDRLTVIHVLSRE 177 (241)
T ss_pred --hCcCceEEEEEecCC
Confidence 112357776666654
No 19
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.88 E-value=2.3e-21 Score=203.23 Aligned_cols=86 Identities=15% Similarity=0.324 Sum_probs=64.8
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~ 435 (658)
++.|.||+|.+... ...+++||||||+||||+++++++++.... ..++|+|+|++|+.+++.+.+++ +++.
T Consensus 134 ~v~i~gP~G~f~l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~-----~~~~v~l~~g~r~~~d~~~~~el-~~l~-- 204 (283)
T cd06188 134 KVTASGPFGEFFIK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK-----SKRKISFWYGARSLKELFYQEEF-EALE-- 204 (283)
T ss_pred EEEEECcccccccc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CCceEEEEEecCCHHHhhHHHHH-HHHH--
Confidence 47899999987654 356799999999999999999999876432 13589999999999998665544 3332
Q ss_pred ccCCCCceEEEEEEcCC
Q 006160 436 FFSDKLNLETFIYVTRE 452 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~ 452 (658)
.+..++++++.+|++
T Consensus 205 --~~~~~~~~~~~~s~~ 219 (283)
T cd06188 205 --KEFPNFKYHPVLSEP 219 (283)
T ss_pred --HHCCCeEEEEEECCC
Confidence 233467777777764
No 20
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.88 E-value=4.4e-21 Score=206.51 Aligned_cols=167 Identities=21% Similarity=0.283 Sum_probs=128.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCC---CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p---~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
...+|++++.+++++.+++++.+ +.+.|+||||+.|.++.. ..+|||||+|.|.+ ++.++|+||.. |.+|+.
T Consensus 107 ~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~-~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 107 ISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNA-TNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCC-CCeEEEEEEECCCCcchhh
Confidence 35788899999999999999866 457899999999999853 35899999999864 48999999996 557777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|++.+..
T Consensus 184 L~~~l~~------------------------------------------------------------------------- 190 (340)
T PRK11872 184 LRERCQV------------------------------------------------------------------------- 190 (340)
T ss_pred HhhCCCC-------------------------------------------------------------------------
Confidence 7543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
+. +
T Consensus 191 ---------------------------------------------------------------------------G~--~ 193 (340)
T PRK11872 191 ---------------------------------------------------------------------------GD--E 193 (340)
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 12 4
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 436 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~ 436 (658)
|.|+||||.+... ...++++|||||+||||+++++++++.+.. .++|+|+|++|+.+++.+.+++. ++.
T Consensus 194 v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~dl~~~~el~-~~~--- 262 (340)
T PRK11872 194 ILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGC------SPPVHLYYGVRHAADLCELQRLA-AYA--- 262 (340)
T ss_pred EEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCC------CCcEEEEEecCChHHhccHHHHH-HHH---
Confidence 7799999997643 345799999999999999999999986431 35799999999999987655543 322
Q ss_pred cCCCCceEEEEEEcCCC
Q 006160 437 FSDKLNLETFIYVTRET 453 (658)
Q Consensus 437 ~~~~~~l~I~iyVT~~~ 453 (658)
.+..+++++..+++.+
T Consensus 263 -~~~~~~~~~~~~s~~~ 278 (340)
T PRK11872 263 -ERLPNFRYHPVVSKAS 278 (340)
T ss_pred -HHCCCcEEEEEEeCCC
Confidence 2345688887777543
No 21
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.88 E-value=2.2e-22 Score=191.71 Aligned_cols=79 Identities=44% Similarity=0.696 Sum_probs=59.8
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCC
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~ 452 (658)
|+++||||||+||||++++++++++..+++ ....++|+|+|++|+.+++.|+.+++.++...... .++++++|+|++
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~-~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~--~~~~~~iyvT~~ 77 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRG-SSRTRRIKLVWVVRDADELEWFSPELNELLELDRL--GNVEVHIYVTRE 77 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT------EEEEEEEES-TTTTHHHHHHHHHHHHHHHH--TSEEEEEEETT-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccc-cccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc--ccceEEEEEcCC
Confidence 789999999999999999999999887522 24578999999999999999999888765432111 579999999998
Q ss_pred CC
Q 006160 453 TE 454 (658)
Q Consensus 453 ~~ 454 (658)
..
T Consensus 78 ~~ 79 (156)
T PF08030_consen 78 SS 79 (156)
T ss_dssp --
T ss_pred cc
Confidence 75
No 22
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.87 E-value=3.6e-21 Score=195.75 Aligned_cols=201 Identities=18% Similarity=0.208 Sum_probs=143.2
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC------CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN------LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT 194 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~------~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T 194 (658)
.++|++++.+++++++++++.+.. +.|+||||+.|.++. ..++|||||+|.+.+ .+.++|+||.. |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG--TDTRRSYSLANTPNW-DGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCC--CccceecccCCCCCC-CCEEEEEEEEcCCCccc
Confidence 467889999999999999997654 789999999999984 346899999999864 47899999987 7788
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP 274 (658)
Q Consensus 195 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (658)
+.|.+.+.
T Consensus 80 ~~l~~~~~------------------------------------------------------------------------ 87 (236)
T cd06210 80 TYLETRAK------------------------------------------------------------------------ 87 (236)
T ss_pred hhhhhCcC------------------------------------------------------------------------
Confidence 77754221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 006160 275 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 354 (658)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (658)
+++
T Consensus 88 ----------------------------------------------------------------------------~Gd- 90 (236)
T cd06210 88 ----------------------------------------------------------------------------VGQ- 90 (236)
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 012
Q ss_pred eEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434 (658)
Q Consensus 355 ~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~ 434 (658)
++.|+||||........+++++|||||+||||+++++++++++.. .++++|+|++|+.+++.+.+++ +++.
T Consensus 91 -~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~~l-~~l~- 161 (236)
T cd06210 91 -RLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE------PQEARLFFGVNTEAELFYLDEL-KRLA- 161 (236)
T ss_pred -EEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhhHHHH-HHHH-
Confidence 477999999964332356789999999999999999999876431 3579999999999998665544 3332
Q ss_pred CccCCCCceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160 435 PFFSDKLNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
....+++++.+++++.+.+. ..+.+.. .+.+..........+.+|||+..
T Consensus 162 ---~~~~~~~~~~~~s~~~~~~~~~~g~~~~-~l~~~l~~~~~~~~vyicGp~~m 212 (236)
T cd06210 162 ---DSLPNLTVRICVWRPGGEWEGYRGTVVD-ALREDLASSDAKPDIYLCGPPGM 212 (236)
T ss_pred ---HhCCCeEEEEEEcCCCCCcCCccCcHHH-HHHHhhcccCCCcEEEEeCCHHH
Confidence 23457889888887543222 2222211 12222222222345789999855
No 23
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.87 E-value=4.3e-21 Score=195.92 Aligned_cols=204 Identities=19% Similarity=0.218 Sum_probs=145.5
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~ 198 (658)
..++.+++.+++++.+++++.+.. ..|+||||+.|+++.. .+.|||||+|.+.+ .+.++|+||.. |.+|+.|+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGY--EGTRAFSIASSPSD-AGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCC--CCccccccCCCCCC-CCEEEEEEEECCCCcchhhHh
Confidence 578889999999999999987665 4899999999999853 36799999999864 47899999998 88898885
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
+.++.
T Consensus 85 ~~l~~--------------------------------------------------------------------------- 89 (238)
T cd06211 85 KQLKE--------------------------------------------------------------------------- 89 (238)
T ss_pred hcCCC---------------------------------------------------------------------------
Confidence 32210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160 279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358 (658)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 358 (658)
+. +|.
T Consensus 90 -------------------------------------------------------------------------G~--~v~ 94 (238)
T cd06211 90 -------------------------------------------------------------------------GD--ELE 94 (238)
T ss_pred -------------------------------------------------------------------------CC--EEE
Confidence 12 477
Q ss_pred EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
|+||+|.........++++|||||+||||+++++++++++.. .++|.|+|++|+.+++.+.+ .++++. .
T Consensus 95 i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~-~l~~l~----~ 163 (238)
T cd06211 95 ISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGD------TRKITLFFGARTRAELYYLD-EFEALE----K 163 (238)
T ss_pred EECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCC------CCcEEEEEecCChhhhccHH-HHHHHH----H
Confidence 999999875432345899999999999999999999986541 25799999999999985444 444432 2
Q ss_pred CCCceEEEEEEcCCCCC--CC-CcccccccccccccCCCCCCceeEeecCCCchHH
Q 006160 439 DKLNLETFIYVTRETEP--PL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWS 491 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~~~--~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~ 491 (658)
+..+++++..++++... +. ..+.+ ++.+.+..+...+...+.+|||++.+..
T Consensus 164 ~~~~~~~~~~~s~~~~~~~~~~~~g~v-~~~l~~~~~~~~~~~~vyvCGp~~m~~~ 218 (238)
T cd06211 164 DHPNFKYVPALSREPPESNWKGFTGFV-HDAAKKHFKNDFRGHKAYLCGPPPMIDA 218 (238)
T ss_pred hCCCeEEEEEECCCCCCcCcccccCcH-HHHHHHhcccccccCEEEEECCHHHHHH
Confidence 34468888888875321 11 12222 2223333321223467899999966443
No 24
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.87 E-value=4.2e-21 Score=194.81 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=142.2
Q ss_pred EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160 127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 204 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~ 204 (658)
++++.+++++++++++.+..+.|+||||++|+++..+ ..|||||+|.+.+ .+.++|+||.. |.+|+.|++.+..
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~-~~~~~~~vk~~~~G~~s~~l~~~~~~- 77 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANA-SGEWEFIIKRKPGGAASNALFDNLEP- 77 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCC-CCEEEEEEEEcCCCcchHHHhhcCCC-
Confidence 4567788999999998877789999999999998643 5699999999864 47899999987 8889888653210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
T Consensus 78 -------------------------------------------------------------------------------- 77 (232)
T cd06190 78 -------------------------------------------------------------------------------- 77 (232)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
++ ++.|+||||
T Consensus 78 -------------------------------------------------------------------g~--~v~v~gP~G 88 (232)
T cd06190 78 -------------------------------------------------------------------GD--ELELDGPYG 88 (232)
T ss_pred -------------------------------------------------------------------CC--EEEEECCcc
Confidence 02 477999999
Q ss_pred CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceE
Q 006160 365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE 444 (658)
Q Consensus 365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~ 444 (658)
.........++++|||||+||||++++++++.++... ...+|+|+|++|+.+++.+.+++ +++. ....+++
T Consensus 89 ~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~----~~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~~~~~ 159 (232)
T cd06190 89 LAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL----SDRPVDLFYGGRTPSDLCALDEL-SALV----ALGARLR 159 (232)
T ss_pred cceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC----CCCeEEEEEeecCHHHHhhHHHH-HHHH----HhCCCEE
Confidence 9764334568999999999999999999999875211 23689999999999998665544 3432 2345688
Q ss_pred EEEEEcCCCCC-----CCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 445 TFIYVTRETEP-----PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 445 I~iyVT~~~~~-----~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+++.+|++.+. ....+. .++.+.+..+....+..+.+|||+..
T Consensus 160 ~~~~~s~~~~~~~~~~~~~~g~-v~~~l~~~~~~~~~~~~vyiCGp~~m 207 (232)
T cd06190 160 VTPAVSDAGSGSAAGWDGPTGF-VHEVVEATLGDRLAEFEFYFAGPPPM 207 (232)
T ss_pred EEEEeCCCCCCcCCCccCCcCc-HHHHHHhhccCCccccEEEEECCHHH
Confidence 88888865431 111121 12222222222123467889999954
No 25
>PRK08051 fre FMN reductase; Validated
Probab=99.87 E-value=5.4e-21 Score=194.76 Aligned_cols=199 Identities=20% Similarity=0.205 Sum_probs=141.6
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCc--hHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE--WTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~--~T~~L~~~ 200 (658)
.+++.+++.+++++++++++.+..+.|+||||++|+++. .+.|||||+|.|.+ ++.++|+||..++ .+.++.+.
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySias~p~~-~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGE---KDKRPFSIASTPRE-KGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCC---CcceeecccCCCCC-CCcEEEEEEEcCCCcchHHHHHH
Confidence 567888999999999999987777899999999999875 35699999999853 3789999999753 45554333
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
+..
T Consensus 80 l~~----------------------------------------------------------------------------- 82 (232)
T PRK08051 80 ILK----------------------------------------------------------------------------- 82 (232)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
+. +|.|+
T Consensus 83 -----------------------------------------------------------------------G~--~v~v~ 89 (232)
T PRK08051 83 -----------------------------------------------------------------------DG--EIEVD 89 (232)
T ss_pred -----------------------------------------------------------------------CC--EEEEE
Confidence 12 58899
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||.........+++||||||+||||+++++++++.... .++++|+|++|+.+++.+.+++ .++. .+.
T Consensus 90 gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~------~~~v~l~~g~r~~~~~~~~~el-~~l~----~~~ 158 (232)
T PRK08051 90 IPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGP------NRPITLYWGGREEDHLYDLDEL-EALA----LKH 158 (232)
T ss_pred cCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCC------CCcEEEEEEeccHHHhhhhHHH-HHHH----HHC
Confidence 9999976543456899999999999999999999987541 3579999999999998554443 3432 233
Q ss_pred CceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160 441 LNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 441 ~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+++++..++++++.+. ..+.+...+.... +.. .+..+.+|||+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~~-~~~~vyicGp~~m 205 (232)
T PRK08051 159 PNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GSL-AEYDIYIAGRFEM 205 (232)
T ss_pred CCcEEEEEeCCCCCCcccceeeehHHHHhhc-cCc-ccCEEEEECCHHH
Confidence 56888777776544322 2222222222222 112 2345889999954
No 26
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.87 E-value=1.3e-20 Score=206.46 Aligned_cols=168 Identities=15% Similarity=0.211 Sum_probs=128.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--CchH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWT 194 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T 194 (658)
+.++|++++.+.+++..+++..+. .+.|+||||+.|.++..+ ..++|||||+|.|.+ +.++|+||+. |.+|
T Consensus 155 ~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~--~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 155 RDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNG--KYYRISVKREAGGKVS 232 (399)
T ss_pred EEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCC--CeEEEEEEECCCCeeh
Confidence 457899999999999999998653 268999999999997433 335799999999863 6899999998 8899
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 195 ENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPP 274 (658)
Q Consensus 195 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (658)
..|.+.+..
T Consensus 233 ~~L~~~l~~----------------------------------------------------------------------- 241 (399)
T PRK13289 233 NYLHDHVNV----------------------------------------------------------------------- 241 (399)
T ss_pred HHHhhcCCC-----------------------------------------------------------------------
Confidence 988653211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCe
Q 006160 275 LQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTK 354 (658)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (658)
|+
T Consensus 242 -----------------------------------------------------------------------------Gd- 243 (399)
T PRK13289 242 -----------------------------------------------------------------------------GD- 243 (399)
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 12
Q ss_pred eEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160 355 ITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434 (658)
Q Consensus 355 ~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~ 434 (658)
+|.|.||||.+..+....+++||||||+||||+++++++++.+. ..++|+|+|++|+.+++.+.++ ++++.
T Consensus 244 -~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~e-L~~l~- 314 (399)
T PRK13289 244 -VLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAARNGGVHAFRDE-VEALA- 314 (399)
T ss_pred -EEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCChhhchHHHH-HHHHH-
Confidence 47899999986543235679999999999999999999997653 1358999999999999865444 33432
Q ss_pred CccCCCCceEEEEEEcCC
Q 006160 435 PFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~ 452 (658)
....+++++.+++++
T Consensus 315 ---~~~~~~~~~~~~s~~ 329 (399)
T PRK13289 315 ---ARHPNLKAHTWYREP 329 (399)
T ss_pred ---HhCCCcEEEEEECCC
Confidence 233467787777754
No 27
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.87 E-value=7.5e-21 Score=192.96 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=145.8
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC--CCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN--LRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 197 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~--~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L 197 (658)
.+++++++.+.+++++++++.+.. +.|+||||++|+++. .+...+||||++|.+.+ .+.++|+||.. |..|+.|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcCCCcchHHH
Confidence 578889999999999999998776 789999999999973 34456799999999864 37899999997 5677776
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 277 (658)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (658)
.+.+..
T Consensus 82 ~~~l~~-------------------------------------------------------------------------- 87 (235)
T cd06217 82 HDEVKV-------------------------------------------------------------------------- 87 (235)
T ss_pred HhcCCC--------------------------------------------------------------------------
Confidence 543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160 278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 357 (658)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 357 (658)
++ ++
T Consensus 88 --------------------------------------------------------------------------Gd--~v 91 (235)
T cd06217 88 --------------------------------------------------------------------------GD--LL 91 (235)
T ss_pred --------------------------------------------------------------------------CC--EE
Confidence 12 47
Q ss_pred EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160 358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 437 (658)
Q Consensus 358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~ 437 (658)
.|+||||.........++++|||||+||||++++++++++... .++++++|++|+.+++.+.+++ .++.
T Consensus 92 ~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~------~~~i~l~~~~r~~~~~~~~~el-~~~~---- 160 (235)
T cd06217 92 EVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGW------PVPFRLLYSARTAEDVIFRDEL-EQLA---- 160 (235)
T ss_pred EEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCC------CceEEEEEecCCHHHhhHHHHH-HHHH----
Confidence 7999999864332346899999999999999999999987541 3579999999999998655544 3332
Q ss_pred CCCCceEEEEEEcCCCC-C-CCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 438 SDKLNLETFIYVTRETE-P-PLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 438 ~~~~~l~I~iyVT~~~~-~-~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+..+++++.++|++.. . ....+.+....+....+. .+.....+|||+..
T Consensus 161 ~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m 212 (235)
T cd06217 161 RRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGPPAF 212 (235)
T ss_pred HHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECCHHH
Confidence 23356888888887622 1 112233322222333222 23467899999965
No 28
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.87 E-value=1.4e-20 Score=203.19 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=126.2
Q ss_pred eEEEEEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
..+|.+++.+.+++++++++.+. .+.|+||||+.|.++..+...+|||||+|.+.+ +.++|+||.. |.+|..
T Consensus 3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~--~~l~i~vk~~~~G~~S~~ 80 (352)
T TIGR02160 3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAP--GEIRVAVKKIPGGLFSTW 80 (352)
T ss_pred EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCC--CcEEEEEEEeCCCcchHH
Confidence 56788999999999999998764 268999999999997545556899999999853 7899999997 556777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|.+.++.
T Consensus 81 l~~~l~~------------------------------------------------------------------------- 87 (352)
T TIGR02160 81 ANDEIRP------------------------------------------------------------------------- 87 (352)
T ss_pred HHhcCCC-------------------------------------------------------------------------
Confidence 7543211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
|+ +
T Consensus 88 ---------------------------------------------------------------------------Gd--~ 90 (352)
T TIGR02160 88 ---------------------------------------------------------------------------GD--T 90 (352)
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 12 4
Q ss_pred EEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160 357 ASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434 (658)
Q Consensus 357 v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~ 434 (658)
+.|.||+|.+.... ...++++|||||+||||+++++++++.+.. .++|+|+|++|+.+++.+.+++. ++..
T Consensus 91 v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~------~~~v~l~~~~r~~~d~~~~~el~-~l~~ 163 (352)
T TIGR02160 91 LEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP------RSTFTLVYGNRRTASVMFAEELA-DLKD 163 (352)
T ss_pred EEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC------CceEEEEEEeCCHHHHHHHHHHH-HHHH
Confidence 77899999864332 234799999999999999999999987531 35799999999999987665543 3221
Q ss_pred CccCCCCceEEEEEEcCCC
Q 006160 435 PFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~ 453 (658)
....+++++.+++++.
T Consensus 164 ---~~~~~~~~~~~~s~~~ 179 (352)
T TIGR02160 164 ---KHPQRFHLAHVLSREP 179 (352)
T ss_pred ---hCcCcEEEEEEecCCC
Confidence 1122477777777653
No 29
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.87 E-value=7.7e-21 Score=191.51 Aligned_cols=199 Identities=20% Similarity=0.231 Sum_probs=144.3
Q ss_pred EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160 127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 204 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~ 204 (658)
.+++.++++++++++..+..+.|+||||+.|.++..+. .+|||||+|.+.+ .+.++|+||.. |.+|+.|.+.+..
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~l~~- 78 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNE-DGEIEFHVRAVPGGRVSNALHDELKV- 78 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCC-CCEEEEEEEeCCCCcchHHHhhcCcc-
Confidence 46678889999999998777899999999999986432 6899999999864 47899999998 8899888663211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T cd06187 79 -------------------------------------------------------------------------------- 78 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
++ ++.|+||||
T Consensus 79 -------------------------------------------------------------------G~--~v~i~gP~G 89 (224)
T cd06187 79 -------------------------------------------------------------------GD--RVRLSGPYG 89 (224)
T ss_pred -------------------------------------------------------------------CC--EEEEeCCcc
Confidence 02 477999999
Q ss_pred CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceE
Q 006160 365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLE 444 (658)
Q Consensus 365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~ 444 (658)
........+++++|||||+||||++++++++..+. ..++|.++|++|+.+++.+.+++. ++. .+..+++
T Consensus 90 ~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~~~~l~-~~~----~~~~~~~ 158 (224)
T cd06187 90 TFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYDLEGLL-ALA----ARHPWLR 158 (224)
T ss_pred ceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcChHHHH-HHH----HhCCCeE
Confidence 87543334789999999999999999999998643 135799999999999987766553 321 2345688
Q ss_pred EEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 445 TFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 445 I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
++.++|++.+.+ ...+.+... +.+..+ ..+.....+|||+..+-
T Consensus 159 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~v~vcGp~~~~~ 203 (224)
T cd06187 159 VVPVVSHEEGAWTGRRGLVTDV-VGRDGP-DWADHDIYICGPPAMVD 203 (224)
T ss_pred EEEEeCCCCCccCCCcccHHHH-HHHhcc-ccccCEEEEECCHHHHH
Confidence 888888764322 122222222 222222 12346788999996633
No 30
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.87 E-value=8.7e-21 Score=191.21 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=141.7
Q ss_pred EEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhc
Q 006160 127 LSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSK 204 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~ 204 (658)
.+++.+++++++++++.+..+.|+||||++|+++. ...|||||+|.+.+ .+.++|+||.. |.+|+.|.+.++.
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~---~~~r~ySi~s~~~~-~~~~~~~i~~~~~G~~s~~l~~~~~~- 76 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAG---GLARSYSPTSLPDG-DNELEFHIRRKPNGAFSGWLGEEARP- 76 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCC---CCceeeecCCCCCC-CCEEEEEEEeccCCccchHHHhccCC-
Confidence 46677899999999998878899999999999975 24699999999864 37899999986 7788877653311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
T Consensus 77 -------------------------------------------------------------------------------- 76 (222)
T cd06194 77 -------------------------------------------------------------------------------- 76 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
+. ++.|+||||
T Consensus 77 -------------------------------------------------------------------G~--~v~i~gP~G 87 (222)
T cd06194 77 -------------------------------------------------------------------GH--ALRLQGPFG 87 (222)
T ss_pred -------------------------------------------------------------------CC--EEEEecCcC
Confidence 02 477999999
Q ss_pred CCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCce
Q 006160 365 HEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNL 443 (658)
Q Consensus 365 ~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l 443 (658)
...... ..+++++|||||+||||+++++++++.+.. .++|+|+|++|+.+++.+.+++ +++. ....++
T Consensus 88 ~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~~~~ 156 (222)
T cd06194 88 QAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH------QGEIRLVHGARDPDDLYLHPAL-LWLA----REHPNF 156 (222)
T ss_pred CeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC------CccEEEEEecCChhhccCHHHH-HHHH----HHCCCe
Confidence 876542 466899999999999999999999986431 3679999999999998655444 3332 234568
Q ss_pred EEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchHH
Q 006160 444 ETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWS 491 (658)
Q Consensus 444 ~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~ 491 (658)
+++.+++++...+.. . ....+.... +...+...+.+|||...+..
T Consensus 157 ~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~~~~~vyicGp~~m~~~ 201 (222)
T cd06194 157 RYIPCVSEGSQGDPR-V-RAGRIAAHL-PPLTRDDVVYLCGAPSMVNA 201 (222)
T ss_pred EEEEEEccCCCCCcc-c-ccchhhhhh-ccccCCCEEEEeCCHHHHHH
Confidence 888888875432111 0 011111111 12234577899999976443
No 31
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.86 E-value=1.6e-20 Score=193.15 Aligned_cols=142 Identities=26% Similarity=0.368 Sum_probs=114.0
Q ss_pred EEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160 127 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 204 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~ 204 (658)
.+++.+.+++++++++.+. .+.|+||||+.|.++. .+.+.+||||++|.+.+ +++++|+||..|.+|+.|.+.
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~G~~s~~l~~l---- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVVGKGTRLLSEL---- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEECcchHHHhcC----
Confidence 4567888999999999876 5789999999999986 45678899999998853 479999999999998766321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
.
T Consensus 77 ~------------------------------------------------------------------------------- 77 (246)
T cd06218 77 K------------------------------------------------------------------------------- 77 (246)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
++. ++.|+||||
T Consensus 78 ------------------------------------------------------------------~Gd--~v~i~gP~G 89 (246)
T cd06218 78 ------------------------------------------------------------------AGD--ELDVLGPLG 89 (246)
T ss_pred ------------------------------------------------------------------CCC--EEEEEecCC
Confidence 012 578999999
Q ss_pred CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
..+......++++|||||+||||++++++++..+. ++++|+|++|+.+++.+.+++
T Consensus 90 ~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~eL 145 (246)
T cd06218 90 NGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG--------IKVTVLLGFRSADDLFLVEEF 145 (246)
T ss_pred CCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC--------CceEEEEEccchhhhhhHHHH
Confidence 75443235789999999999999999999987621 479999999999998665544
No 32
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.86 E-value=1.9e-20 Score=187.60 Aligned_cols=196 Identities=19% Similarity=0.290 Sum_probs=144.0
Q ss_pred EEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHHHhhcCC
Q 006160 129 ASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDYILSKSE 206 (658)
Q Consensus 129 v~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~~~~~~~ 206 (658)
.+.+.++++++++..+..+.|+||||+.|.++..+...+|||||+|.+.+ .+.++|+||.. |.+|+.|.+. +.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~~G~~s~~l~~~--~~-- 77 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVPGGPFSAWLHDL--KP-- 77 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeCCCchhhHHhcC--CC--
Confidence 45677899999999877789999999999999766778999999999864 47999999999 9999988543 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 207 SDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPH 286 (658)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (658)
T Consensus 78 -------------------------------------------------------------------------------- 77 (223)
T cd00322 78 -------------------------------------------------------------------------------- 77 (223)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCC
Q 006160 287 PPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHE 366 (658)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~ 366 (658)
+. ++.|+||+|..
T Consensus 78 -----------------------------------------------------------------G~--~v~i~gP~G~~ 90 (223)
T cd00322 78 -----------------------------------------------------------------GD--EVEVSGPGGDF 90 (223)
T ss_pred -----------------------------------------------------------------CC--EEEEECCCccc
Confidence 02 47799999998
Q ss_pred ccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEE
Q 006160 367 VPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETF 446 (658)
Q Consensus 367 ~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~ 446 (658)
......+++++|||||+||||++++++++.+.. ..++++|+|++|+.+++.+.+++. ++. ....+++++
T Consensus 91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el~-~l~----~~~~~~~~~ 159 (223)
T cd00322 91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFLDELE-ELA----KEGPNFRLV 159 (223)
T ss_pred ccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHHHHHH-HHH----HhCCCeEEE
Confidence 544457789999999999999999999998753 135799999999999886655543 332 234568888
Q ss_pred EEEcCCCCCCCCc-cccc-ccccccccCCCCCCceeEeecCCCc
Q 006160 447 IYVTRETEPPLEE-GELH-KTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 447 iyVT~~~~~~~~~-~~~~-~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
++++++...+... .... ...+.+.. ...+.....+|||+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~yvCGp~~m 202 (223)
T cd00322 160 LALSRESEAKLGPGGRIDREAEILALL-PDDSGALVYICGPPAM 202 (223)
T ss_pred EEecCCCCCCCcccceeeHHHHHHhhc-ccccCCEEEEECCHHH
Confidence 8888765432211 1111 01111211 1234577899999965
No 33
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.86 E-value=1e-20 Score=191.64 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=116.5
Q ss_pred EEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCC----------------CCCcceeEEeeeCCCCC--CCeEEEEE
Q 006160 129 ASCLPCGTVELVLSKPAN---LRYNALSFFFLQVREL----------------SWLQWHPFSVSSSPLEG--KYHSSVLI 187 (658)
Q Consensus 129 v~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~i----------------s~~q~HPFTIaS~p~~~--~~~lsl~I 187 (658)
.+.+++++.++++..+.. +.|+|||||+|+++.. +...+|+|||+|.|.++ .+.++|+|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 456788999999988766 8999999999999752 22457899999999653 27899999
Q ss_pred EEcCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160 188 KVLGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267 (658)
Q Consensus 188 R~~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 267 (658)
|+.|++|+.|++.......
T Consensus 83 k~~G~~T~~L~~~~~~~~~------------------------------------------------------------- 101 (220)
T cd06197 83 RKKGPVTGFLFQVARRLRE------------------------------------------------------------- 101 (220)
T ss_pred EeCCCCCHHHHHhhhcccC-------------------------------------------------------------
Confidence 9999999999887643110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (658)
T Consensus 102 -------------------------------------------------------------------------------- 101 (220)
T cd06197 102 -------------------------------------------------------------------------------- 101 (220)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEECccCCCccCc---cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhh
Q 006160 348 PLLPPTKITASVEGPYGHEVPYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSL 424 (658)
Q Consensus 348 ~~~~~~~~~v~veGPyG~~~~~~---~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~ 424 (658)
.--++.|+||||.+.... ..+++++|||||+||||+++++++++++.. ..++|+|+|++|+.+++.+
T Consensus 102 -----~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~-----~~~~v~l~~~~r~~~~~~~ 171 (220)
T cd06197 102 -----QGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRN-----TTWDITLLWSLREDDLPLV 171 (220)
T ss_pred -----CCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhccc-----CCCcEEEEEEecchhhHHH
Confidence 001578999999865332 357899999999999999999999986431 1358999999999998866
Q ss_pred HHHH
Q 006160 425 LSNF 428 (658)
Q Consensus 425 l~~~ 428 (658)
.+++
T Consensus 172 ~~el 175 (220)
T cd06197 172 MDTL 175 (220)
T ss_pred HHHH
Confidence 5554
No 34
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.85 E-value=3.5e-20 Score=191.52 Aligned_cols=196 Identities=20% Similarity=0.312 Sum_probs=136.3
Q ss_pred EEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 127 LSASCLPCGTVELVLSKPA----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
.+++.+++++.+++++.+. .+.|+||||++|.++..+. |||||+|.+.+ ++.++|+||..|.+|+.|.+. +
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~~---~pySi~s~~~~-~~~l~~~Ik~~G~~S~~L~~l-~ 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGE---APISISSDPTR-RGPLELTIRRVGRVTEALHEL-K 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCCc---cceEecCCCCC-CCeEEEEEEeCChhhHHHHcC-C
Confidence 4667788876666555433 3799999999999986433 99999999964 479999999999999877431 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 77 ~------------------------------------------------------------------------------- 77 (253)
T cd06221 77 P------------------------------------------------------------------------------- 77 (253)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP 362 (658)
+. ++.++||
T Consensus 78 ---------------------------------------------------------------------G~--~v~i~gP 86 (253)
T cd06221 78 ---------------------------------------------------------------------GD--TVGLRGP 86 (253)
T ss_pred ---------------------------------------------------------------------CC--EEEEECC
Confidence 02 4779999
Q ss_pred cCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160 363 YGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 441 (658)
Q Consensus 363 yG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~ 441 (658)
||..+.... .++++||||||+||||+++++++++++.. ..++++|+|++|+.+++.+.+++ .++. .+ .
T Consensus 87 ~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~-----~~~~i~Li~~~r~~~~~~~~~~L-~~l~----~~-~ 155 (253)
T cd06221 87 FGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE-----DYGKVTLLYGARTPEDLLFKEEL-KEWA----KR-S 155 (253)
T ss_pred cCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc-----cCCcEEEEEecCChHHcchHHHH-HHHH----hc-C
Confidence 998654322 57899999999999999999999987531 13689999999999998655444 3432 23 5
Q ss_pred ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCch
Q 006160 442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV 489 (658)
Q Consensus 442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~ 489 (658)
+++++++++++.+.+........+.+.+....+ ......+|||++.+
T Consensus 156 ~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~-~~~~vyicGp~~mv 202 (253)
T cd06221 156 DVEVILTVDRAEEGWTGNVGLVTDLLPELTLDP-DNTVAIVCGPPIMM 202 (253)
T ss_pred CeEEEEEeCCCCCCccCCccccchhHHhcCCCc-CCcEEEEECCHHHH
Confidence 688888888654322211111122222222222 35678999999663
No 35
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.84 E-value=6.3e-20 Score=196.80 Aligned_cols=204 Identities=12% Similarity=0.152 Sum_probs=145.3
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
..+|.+++.+.++++.+++..+..+.|+||||+.|.++.. ...+|||||+|.|.+ .+.++|+||.. |..|+.|++.
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~-~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGV-SEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCC-CCcEEEEEEEcCCCcchhHHHhc
Confidence 5788899999999999999877778999999999999843 345799999999864 36899999997 7788887653
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++.
T Consensus 89 l~~----------------------------------------------------------------------------- 91 (332)
T PRK10684 89 VKR----------------------------------------------------------------------------- 91 (332)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
|+ ++.+.
T Consensus 92 -----------------------------------------------------------------------Gd--~v~v~ 98 (332)
T PRK10684 92 -----------------------------------------------------------------------GD--YLWLS 98 (332)
T ss_pred -----------------------------------------------------------------------CC--EEEEe
Confidence 12 47789
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||+|.+.......+++||||||+||||+++++++++.+.. .++|+|+|++|+.+++.+.+++. ++. .+.
T Consensus 99 gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~------~~~v~l~y~~r~~~~~~~~~el~-~l~----~~~ 167 (332)
T PRK10684 99 DAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP------QADVQVIFNVRTPQDVIFADEWR-QLK----QRY 167 (332)
T ss_pred CCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCC------CCCEEEEEeCCChHHhhhHHHHH-HHH----HHC
Confidence 9999965432456789999999999999999999876431 35799999999999987665543 332 233
Q ss_pred CceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 441 LNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 441 ~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
.+++++++.++........+.+...++....+... ...+.+|||+..+-
T Consensus 168 ~~~~~~~~~~~~~~~~~~~grl~~~~l~~~~~~~~-~~~vyiCGP~~m~~ 216 (332)
T PRK10684 168 PQLNLTLVAENNATEGFIAGRLTRELLQQAVPDLA-SRTVMTCGPAPYMD 216 (332)
T ss_pred CCeEEEEEeccCCCCCccccccCHHHHHHhccccc-CCEEEEECCHHHHH
Confidence 45777766664322111123333233333334332 35688999996643
No 36
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.84 E-value=8e-20 Score=183.70 Aligned_cols=192 Identities=23% Similarity=0.289 Sum_probs=138.7
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCC-CCcceeEEeeeCCCCCCCeEEEEEEEc---CchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELS-WLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is-~~q~HPFTIaS~p~~~~~~lsl~IR~~---G~~T~~L~ 198 (658)
+.++.+++.+++++++++++.+..+.|+||||++|.++..+ +.++||||++|.+.+ +.++|+||.. |++|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEcCCCCcHhHHHH
Confidence 36788999999999999999888889999999999997543 357899999999864 7999999986 67887763
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
+. .
T Consensus 80 ~l-~---------------------------------------------------------------------------- 82 (218)
T cd06196 80 RL-Q---------------------------------------------------------------------------- 82 (218)
T ss_pred hC-C----------------------------------------------------------------------------
Confidence 21 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160 279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358 (658)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 358 (658)
+++ ++.
T Consensus 83 ------------------------------------------------------------------------~G~--~v~ 88 (218)
T cd06196 83 ------------------------------------------------------------------------PGD--TLL 88 (218)
T ss_pred ------------------------------------------------------------------------CCC--EEE
Confidence 012 477
Q ss_pred EECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 359 VEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 359 veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
++||||.... .+++||||||+||||+++++++++... ..++++|+|++|+.+++.+.+++ +++
T Consensus 89 i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l------ 151 (218)
T cd06196 89 IEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKTEKDIILKDEL-EKM------ 151 (218)
T ss_pred EECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCCHHHHhhHHHH-HHh------
Confidence 9999998532 267999999999999999999998743 13579999999999988655444 332
Q ss_pred CCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 439 DKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.++++..++|++.......+.+...++.+..+. +...+.+|||+..
T Consensus 152 --~~~~~~~~~s~~~~~~~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m 197 (218)
T cd06196 152 --LGLKFINVVTDEKDPGYAHGRIDKAFLKQHVTD--FNQHFYVCGPPPM 197 (218)
T ss_pred --hcceEEEEEcCCCCCCeeeeEECHHHHHHhcCC--CCCEEEEECCHHH
Confidence 135666777875432111233333333333322 2356789999854
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.84 E-value=2e-19 Score=189.49 Aligned_cols=168 Identities=21% Similarity=0.367 Sum_probs=126.0
Q ss_pred ceEEEEEEEEecCc--eEEEEEeCC---CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHH
Q 006160 122 RTVDVLSASCLPCG--TVELVLSKP---ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTEN 196 (658)
Q Consensus 122 ~~~~v~sv~~l~~~--v~~l~i~~p---~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~ 196 (658)
+..++++++.++++ .+.+++..+ ..+.|+||||++|+++..+ .|||||+|.+.+ .+.++|+||..|.+|+.
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~-~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTR-KGFFELCIRRAGRVTTV 81 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCC-CCEEEEEEEeCChHHHH
Confidence 35788899999887 556665544 2378999999999998643 389999999864 47899999999999997
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|.+ +..
T Consensus 82 L~~-l~~------------------------------------------------------------------------- 87 (289)
T PRK08345 82 IHR-LKE------------------------------------------------------------------------- 87 (289)
T ss_pred HHh-CCC-------------------------------------------------------------------------
Confidence 743 100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
++ +
T Consensus 88 ---------------------------------------------------------------------------Gd--~ 90 (289)
T PRK08345 88 ---------------------------------------------------------------------------GD--I 90 (289)
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 12 4
Q ss_pred EEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160 357 ASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435 (658)
Q Consensus 357 v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~ 435 (658)
+.|+||||..+.. ....++++|||||+||||+++++++++++.. ..++|+|+|++|+.+|+.+.+++. ++.
T Consensus 91 v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~-----~~~~v~l~~~~r~~~d~~~~deL~-~l~-- 162 (289)
T PRK08345 91 VGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW-----KYGNITLIYGAKYYEDLLFYDELI-KDL-- 162 (289)
T ss_pred EEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC-----CCCcEEEEEecCCHHHhhHHHHHH-HHH--
Confidence 7799999985432 1234689999999999999999999886431 135899999999999997665553 332
Q ss_pred ccCCCCceEEEEEEcCCCC
Q 006160 436 FFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~~~ 454 (658)
.+..+++++.+++++++
T Consensus 163 --~~~~~~~~~~~~s~~~~ 179 (289)
T PRK08345 163 --AEAENVKIIQSVTRDPE 179 (289)
T ss_pred --hcCCCEEEEEEecCCCC
Confidence 24457899999998654
No 38
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.84 E-value=2.6e-19 Score=178.94 Aligned_cols=68 Identities=6% Similarity=0.047 Sum_probs=54.7
Q ss_pred EEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCc---hHHHHHH
Q 006160 128 SASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGE---WTENLRD 199 (658)
Q Consensus 128 sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~---~T~~L~~ 199 (658)
+++.+.+++++++++.+.. ..|+||||++|+++. ...|||||+|.+.+ .+.++|+||..++ +|..|.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~-~~~l~~~v~~~~~g~~~s~~l~~ 75 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPAD-RDRYRIAVLREPASRGGSRYMHE 75 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCC-CCEEEEEEEeccCCCchHHHHHh
Confidence 4567889999999998765 389999999999976 35799999999864 4899999998742 5666543
No 39
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.84 E-value=1.2e-19 Score=183.75 Aligned_cols=205 Identities=19% Similarity=0.239 Sum_probs=144.6
Q ss_pred EEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160 125 DVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 199 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~ 199 (658)
++.+.+.+++++.+++++.+. .+.|+||||++|.++..+....||||++|.+.+ .+.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECCCCcchhHHhc
Confidence 567788899999999998775 378999999999999766778999999998864 36899999997 778877632
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 279 (658)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (658)
. .
T Consensus 81 ~-~----------------------------------------------------------------------------- 82 (234)
T cd06183 81 L-K----------------------------------------------------------------------------- 82 (234)
T ss_pred C-C-----------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160 280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 359 (658)
+++ ++.|
T Consensus 83 -----------------------------------------------------------------------~G~--~v~i 89 (234)
T cd06183 83 -----------------------------------------------------------------------PGD--TVEI 89 (234)
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 012 4779
Q ss_pred ECccCCCccCccc-cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 360 EGPYGHEVPYHLM-YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 360 eGPyG~~~~~~~~-~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
+||||........ ++++||||||+||||+++++++++.+.. ..++|+|+|++|+.+++.+.++ ++++.. .
T Consensus 90 ~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-----~~~~i~l~~~~r~~~~~~~~~~-l~~~~~---~ 160 (234)
T cd06183 90 RGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE-----DKTKISLLYANRTEEDILLREE-LDELAK---K 160 (234)
T ss_pred ECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-----cCcEEEEEEecCCHHHhhhHHH-HHHHHH---h
Confidence 9999986433223 3799999999999999999999986531 1368999999999998854444 334321 1
Q ss_pred CCCceEEEEEEcCCCCCC-CCcccccccccccccCC-CCCCceeEeecCCCchH
Q 006160 439 DKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPV-PSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~-~~d~~~~~v~Gp~~~~w 490 (658)
...+++++.++|+....+ ...+.+...++.+..+. +.....+.+|||++.+-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~ 214 (234)
T cd06183 161 HPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIE 214 (234)
T ss_pred CcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHH
Confidence 125688888888754322 11222222222233322 23456789999996643
No 40
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.83 E-value=3.9e-19 Score=195.97 Aligned_cols=86 Identities=16% Similarity=0.399 Sum_probs=65.4
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~ 435 (658)
++.|+||+|.+... ...++++|||||+||||+++++++++++.+ ..++++|+|++|+.+++.+.+++. ++.
T Consensus 258 ~v~v~gP~G~f~~~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~-----~~~~v~L~~g~r~~~d~~~~~el~-~l~-- 328 (409)
T PRK05464 258 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYVEDFD-QLA-- 328 (409)
T ss_pred EEEEEccccCcEec-CCCceEEEEEeccChhHHHHHHHHHHhCCC-----CCceEEEEEecCCHHHhhHHHHHH-HHH--
Confidence 47799999998654 456899999999999999999998876532 135899999999999987666553 322
Q ss_pred ccCCCCceEEEEEEcCC
Q 006160 436 FFSDKLNLETFIYVTRE 452 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~ 452 (658)
.+..++++++.++++
T Consensus 329 --~~~~~~~~~~~~s~~ 343 (409)
T PRK05464 329 --AENPNFKWHVALSDP 343 (409)
T ss_pred --HhCCCeEEEEEEcCC
Confidence 234567777777654
No 41
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.83 E-value=8.1e-19 Score=178.93 Aligned_cols=133 Identities=21% Similarity=0.360 Sum_probs=109.4
Q ss_pred EEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhc
Q 006160 125 DVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSK 204 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~ 204 (658)
++.+++.+++++.+++++.+ +.|+||||+.|+++.. ..||||++|.| +.++|+||..|.+|+.|.+ ++.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~~- 70 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LKE- 70 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cCC-
Confidence 67888899999999999864 5899999999999754 35999999997 5899999999999998865 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 205 SESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQG 284 (658)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (658)
T Consensus 71 -------------------------------------------------------------------------------- 70 (233)
T cd06220 71 -------------------------------------------------------------------------------- 70 (233)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccC
Q 006160 285 PHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYG 364 (658)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG 364 (658)
++ ++.|+||||
T Consensus 71 -------------------------------------------------------------------Gd--~v~i~gP~G 81 (233)
T cd06220 71 -------------------------------------------------------------------GD--KLGIRGPYG 81 (233)
T ss_pred -------------------------------------------------------------------CC--EEEEECcCC
Confidence 02 467999999
Q ss_pred CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 365 HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 365 ~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
..+.. ++++++|||||+||||+++++++++++ ++++|+|++|+.+++.+.+++
T Consensus 82 ~~f~~--~~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~~~eL 134 (233)
T cd06220 82 NGFEL--VGGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLFLDRL 134 (233)
T ss_pred CCccC--CCCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChhHHHH
Confidence 85432 278999999999999999999998753 469999999999998655443
No 42
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.83 E-value=4.5e-19 Score=182.75 Aligned_cols=146 Identities=19% Similarity=0.325 Sum_probs=119.5
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYI 201 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~ 201 (658)
+..++++++.+++++++++++.+..+.|+||||++|.++..++..+|||||+|.+ + ++++|+||..|.+|+.|.+.
T Consensus 5 ~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~--~~l~l~Vk~~G~~t~~l~~l- 80 (250)
T PRK00054 5 ENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-K--NEITILYRKVGEGTKKLSKL- 80 (250)
T ss_pred eEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-C--CEEEEEEEEcChHHHHHhcC-
Confidence 3578889999999999999997767899999999999997666789999999998 3 79999999999999876421
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 202 LSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPP 281 (658)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (658)
.
T Consensus 81 ---~---------------------------------------------------------------------------- 81 (250)
T PRK00054 81 ---K---------------------------------------------------------------------------- 81 (250)
T ss_pred ---C----------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEEC
Q 006160 282 PQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEG 361 (658)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veG 361 (658)
+++ ++.|+|
T Consensus 82 ---------------------------------------------------------------------~G~--~v~i~g 90 (250)
T PRK00054 82 ---------------------------------------------------------------------EGD--ELDIRG 90 (250)
T ss_pred ---------------------------------------------------------------------CCC--EEEEEc
Confidence 012 478999
Q ss_pred ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160 362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY 429 (658)
Q Consensus 362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l 429 (658)
|||..+..-...++++|||||+||||++++++++.++. ++++|+|++|+.+++.+.+++.
T Consensus 91 P~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~el~ 150 (250)
T PRK00054 91 PLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDEVIFEEEFA 150 (250)
T ss_pred ccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHHhhhHHHHH
Confidence 99985443236689999999999999999999987532 3699999999999986655543
No 43
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.82 E-value=3.3e-19 Score=187.16 Aligned_cols=191 Identities=17% Similarity=0.249 Sum_probs=135.3
Q ss_pred EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
.++++.+.+++++++++++.+. ...|+||||++|+++.. .++|||||+|.+.+ ++.++|+||..|..|+.|.+. .
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~-~~~i~l~vk~~G~~T~~L~~l-~ 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDRE-KGTITIVFQAVGKSTRKLAEL-K 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCC-CCEEEEEEEeCCcHHHHHhcC-C
Confidence 4678888999999999998765 35799999999999743 35799999998754 478999999999999987421 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
T Consensus 78 -------------------------------------------------------------------------------- 77 (281)
T PRK06222 78 -------------------------------------------------------------------------------- 77 (281)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG 361 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG 361 (658)
+++ ++ .|+|
T Consensus 78 --------------------------------------------------------------------~Gd--~v~~i~G 87 (281)
T PRK06222 78 --------------------------------------------------------------------EGD--SILDVVG 87 (281)
T ss_pred --------------------------------------------------------------------CCC--EEeeEEc
Confidence 012 46 5999
Q ss_pred ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160 362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 441 (658)
Q Consensus 362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~ 441 (658)
|||+.+.. ..+++++|||||+||||++++++++.++. .+|+++|++|+.+++.+.+++. ++. .
T Consensus 88 P~G~~~~~-~~~~~~llIaGGiGiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~d~~~~~el~-~~~-----~-- 150 (281)
T PRK06222 88 PLGKPSEI-EKFGTVVCVGGGVGIAPVYPIAKALKEAG--------NKVITIIGARNKDLLILEDEMK-AVS-----D-- 150 (281)
T ss_pred CCCCCccc-CCCCeEEEEeCcCcHHHHHHHHHHHHHCC--------CeEEEEEecCCHHHhhcHHHHH-hhC-----C--
Confidence 99997653 34679999999999999999999986532 3799999999999987665543 221 1
Q ss_pred ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
++ +++.++.+....+. .++++....+...+...+.+|||+..+-
T Consensus 151 --~~--~v~~~d~~~g~~G~-v~~~l~~~~~~~~~~~~vy~CGP~~M~~ 194 (281)
T PRK06222 151 --EL--YVTTDDGSYGRKGF-VTDVLKELLESGKKVDRVVAIGPVIMMK 194 (281)
T ss_pred --eE--EEEcCCCCcCcccc-hHHHHHHHhhcCCCCcEEEEECCHHHHH
Confidence 12 23333332222222 2233444444332235689999996643
No 44
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.82 E-value=7e-19 Score=193.69 Aligned_cols=86 Identities=16% Similarity=0.367 Sum_probs=64.8
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICP 435 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~ 435 (658)
++.|+||+|.+... ...+++||||||+||||+++++++++.+.+ ..++++|+|++|+.+++.+.+++. ++.
T Consensus 254 ~v~i~gP~G~f~l~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~-----~~~~v~l~~g~R~~~dl~~~~el~-~l~-- 324 (405)
T TIGR01941 254 KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK-----SKRKISFWYGARSLREMFYQEDFD-QLE-- 324 (405)
T ss_pred EEEEEeccCCCeec-CCCCCEEEEecCcCcchHHHHHHHHHhcCC-----CCCeEEEEEecCCHHHHhHHHHHH-HHH--
Confidence 47799999998653 356789999999999999999998776432 135799999999999987665543 322
Q ss_pred ccCCCCceEEEEEEcCC
Q 006160 436 FFSDKLNLETFIYVTRE 452 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~ 452 (658)
.+..+++++++++++
T Consensus 325 --~~~~~~~~~~~~s~~ 339 (405)
T TIGR01941 325 --AENPNFVWHVALSDP 339 (405)
T ss_pred --HhCCCeEEEEEeCCC
Confidence 244568887777754
No 45
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.81 E-value=1.2e-18 Score=179.72 Aligned_cols=201 Identities=19% Similarity=0.161 Sum_probs=139.2
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
.++|.+++.+.+++++++++.+. ..|+||||+.|.++..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+
T Consensus 6 ~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~--~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 6 TGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN--PDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred EEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCC--CeEEEEEEEeCCCCcChHHHh-
Confidence 57888999999999999998763 37999999999996444456799999999854 5899999997 888887742
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++.
T Consensus 82 l~~----------------------------------------------------------------------------- 84 (248)
T PRK10926 82 LKP----------------------------------------------------------------------------- 84 (248)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
|+ +|.|.
T Consensus 85 -----------------------------------------------------------------------Gd--~v~i~ 91 (248)
T PRK10926 85 -----------------------------------------------------------------------GD--EVQVV 91 (248)
T ss_pred -----------------------------------------------------------------------CC--EEEEe
Confidence 12 47799
Q ss_pred CccCCCcc-Cc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 361 GPYGHEVP-YH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 361 GPyG~~~~-~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
||+|..+. +. ...++++|||||+||||++++++++.+.. ..++|+|+|++|+.+++.+.+++. ++. .
T Consensus 92 gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~~~d~~~~~el~-~l~----~ 160 (248)
T PRK10926 92 SEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARYAADLSYLPLMQ-ELE----Q 160 (248)
T ss_pred cCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCcHHHHHHHHHHH-HHH----H
Confidence 99854432 21 13478999999999999999999986433 135799999999999986655543 332 1
Q ss_pred CC-CceEEEEEEcCCCCCCCCcccccc----ccccccc--CCCCCCceeEeecCCCc
Q 006160 439 DK-LNLETFIYVTRETEPPLEEGELHK----TMSSSIY--PVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 439 ~~-~~l~I~iyVT~~~~~~~~~~~~~~----~~v~~~~--P~~~d~~~~~v~Gp~~~ 488 (658)
+. .+++++..+++++......+.+.. ..+.... +...+...+.+|||+.-
T Consensus 161 ~~~~~~~v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~M 217 (248)
T PRK10926 161 RYEGKLRIQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQM 217 (248)
T ss_pred hCcCCEEEEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHH
Confidence 22 368888888875532211222211 1011111 11124567899999964
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.81 E-value=6.5e-19 Score=180.51 Aligned_cols=142 Identities=26% Similarity=0.330 Sum_probs=113.8
Q ss_pred EEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhhcC
Q 006160 127 LSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILSKS 205 (658)
Q Consensus 127 ~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~~~ 205 (658)
++++.+++++++++++.|. .+.|+||||++|+++......+|||||+|.+.+ .++++|+||..|.+|+.|.+. .
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~~G~~t~~l~~~-~--- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEIRGPKTKLIAEL-K--- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEEcCchHHHHHhC-C---
Confidence 4567788999999999765 378999999999997545668899999999854 489999999999999877421 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 206 ESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGP 285 (658)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (658)
T Consensus 77 -------------------------------------------------------------------------------- 76 (243)
T cd06192 77 -------------------------------------------------------------------------------- 76 (243)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCC
Q 006160 286 HPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGH 365 (658)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~ 365 (658)
++. ++.|+||||.
T Consensus 77 -----------------------------------------------------------------~G~--~l~i~gP~G~ 89 (243)
T cd06192 77 -----------------------------------------------------------------PGE--KLDVMGPLGN 89 (243)
T ss_pred -----------------------------------------------------------------CCC--EEEEEccCCC
Confidence 012 4779999998
Q ss_pred CccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 366 EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 366 ~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
........++++|||||+||||++++++++.++. ++++++|++|+.+|+.+.+++
T Consensus 90 ~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~--------~~v~l~~~~r~~~d~~~~~el 144 (243)
T cd06192 90 GFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG--------NKVTVLAGAKKAKEEFLDEYF 144 (243)
T ss_pred CCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC--------CeEEEEEecCcHHHHHHHHHH
Confidence 7554334789999999999999999999987532 479999999999988554443
No 47
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.81 E-value=4.8e-18 Score=176.80 Aligned_cols=148 Identities=27% Similarity=0.354 Sum_probs=125.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCCC--CcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPANL--RYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENL 197 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~~--~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L 197 (658)
...+|.+++...++++.+++..+.+. .|+||||+.|.++..+...++.|||+|+|.++ +.+.|.||+. |..|+.|
T Consensus 6 ~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~-~~~~isVk~~~~G~~S~~L 84 (266)
T COG1018 6 RRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDED-SLYRISVKREDGGGGSNWL 84 (266)
T ss_pred EEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCC-ceEEEEEEEeCCCcccHHH
Confidence 46789999999999999999998876 49999999999997777899999999999753 6899999998 7889988
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 198 RDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQE 277 (658)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (658)
++.++.
T Consensus 85 h~~lk~-------------------------------------------------------------------------- 90 (266)
T COG1018 85 HDHLKV-------------------------------------------------------------------------- 90 (266)
T ss_pred HhcCCC--------------------------------------------------------------------------
Confidence 766532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE
Q 006160 278 EGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA 357 (658)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 357 (658)
|+ ++
T Consensus 91 --------------------------------------------------------------------------Gd--~l 94 (266)
T COG1018 91 --------------------------------------------------------------------------GD--TL 94 (266)
T ss_pred --------------------------------------------------------------------------CC--EE
Confidence 13 36
Q ss_pred EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHH
Q 006160 358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 427 (658)
Q Consensus 358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~ 427 (658)
.|.+|.|.+..+....++++|+||||||||++||++++.... . .+|.|++++|+.+++.+.++
T Consensus 95 ~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~~~~~af~de 157 (266)
T COG1018 95 EVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAARTPADLAFRDE 157 (266)
T ss_pred EEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCChhhcchhhH
Confidence 679999998665445558999999999999999999998755 2 57999999999999988775
No 48
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.81 E-value=1e-18 Score=179.91 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=132.1
Q ss_pred EEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHhh
Q 006160 125 DVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYILS 203 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~~ 203 (658)
++++++.+.++++.++++.+.. ..|+||||++|+++. ..++|||||+|.+.+ ++.++|+||..|+.|+.|.+. ..
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~--~~~~~pySi~s~~~~-~~~~~~~vk~~G~~t~~l~~l-~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADE--KGERIPLTIADWDPE-KGTITIVVQVVGKSTRELATL-EE 77 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCC--CCCccceEeEEEcCC-CCEEEEEEEeCCchHHHHHhc-CC
Confidence 5778888999999999997653 589999999999864 235799999998753 479999999999999776322 10
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 204 KSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQ 283 (658)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (658)
T Consensus 78 -------------------------------------------------------------------------------- 77 (248)
T cd06219 78 -------------------------------------------------------------------------------- 77 (248)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEECc
Q 006160 284 GPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEGP 362 (658)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veGP 362 (658)
+. ++ .++||
T Consensus 78 --------------------------------------------------------------------G~--~v~~i~gP 87 (248)
T cd06219 78 --------------------------------------------------------------------GD--KIHDVVGP 87 (248)
T ss_pred --------------------------------------------------------------------CC--EeeeeecC
Confidence 01 36 59999
Q ss_pred cCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCc
Q 006160 363 YGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLN 442 (658)
Q Consensus 363 yG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~ 442 (658)
||..... .++++++|||||+||||++++++++.+.. ++++|+|++|+.+++.+.+++. ++. .
T Consensus 88 ~G~~~~~-~~~~~~lliagG~GiaP~~~~l~~~~~~~--------~~v~l~~~~r~~~~~~~~~el~-~l~-----~--- 149 (248)
T cd06219 88 LGKPSEI-ENYGTVVFVGGGVGIAPIYPIAKALKEAG--------NRVITIIGARTKDLVILEDEFR-AVS-----D--- 149 (248)
T ss_pred CCCCeec-CCCCeEEEEeCcccHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhHHHHH-hhc-----C---
Confidence 9997543 45689999999999999999999987532 4799999999999986655443 321 1
Q ss_pred eEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 443 LETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 443 l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
++ .+++++ .+....+ ...+.+.+..+...+...+.+|||+..+-
T Consensus 150 -~~-~~~~~~-~~~~~~g-~v~~~l~~~~~~~~~~~~vyiCGP~~m~~ 193 (248)
T cd06219 150 -EL-IITTDD-GSYGEKG-FVTDPLKELIESGEKVDLVIAIGPPIMMK 193 (248)
T ss_pred -eE-EEEeCC-CCCCccc-cchHHHHHHHhccCCccEEEEECCHHHHH
Confidence 11 223332 2211111 12222333332222345789999996643
No 49
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.81 E-value=1.7e-18 Score=185.18 Aligned_cols=211 Identities=12% Similarity=0.072 Sum_probs=145.9
Q ss_pred cceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCC---CCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160 121 RRTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVREL---SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 193 (658)
Q Consensus 121 ~~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~i---s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~ 193 (658)
+..+++.+++.+++++.+++++.+. .+.|+||||+.+.++.. ....+|+||++|.|.+ .+.++|+||+. |.+
T Consensus 52 ~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~~G~~ 130 (325)
T PTZ00274 52 YEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKKDGLM 130 (325)
T ss_pred eEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcCCCcc
Confidence 3568899999999999999997654 58999999999887621 2346899999999964 47999999996 667
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273 (658)
Q Consensus 194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (658)
|..|++ ++.
T Consensus 131 S~~L~~-lk~---------------------------------------------------------------------- 139 (325)
T PTZ00274 131 TNHLFG-MHV---------------------------------------------------------------------- 139 (325)
T ss_pred cHHHhc-CCC----------------------------------------------------------------------
Confidence 888763 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 353 (658)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (658)
|+
T Consensus 140 ------------------------------------------------------------------------------Gd 141 (325)
T PTZ00274 140 ------------------------------------------------------------------------------GD 141 (325)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160 354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 433 (658)
Q Consensus 354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell 433 (658)
++.|.||+|.........++++||||||||||+++++++++++..........+|+|+|++|+.+|+.+.+++ +++.
T Consensus 142 --~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL-~~La 218 (325)
T PTZ00274 142 --KLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLF-DDLA 218 (325)
T ss_pred --EEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHH-HHHH
Confidence 4778999886533223457999999999999999999999875421101123589999999999998655443 3332
Q ss_pred CCccCCC-CceEEEEEEcCCCC---CCCCcccccccccccccCCCC-CCceeEeecCCCc
Q 006160 434 CPFFSDK-LNLETFIYVTRETE---PPLEEGELHKTMSSSIYPVPS-GCAMSVLVGTGNN 488 (658)
Q Consensus 434 ~~~~~~~-~~l~I~iyVT~~~~---~~~~~~~~~~~~v~~~~P~~~-d~~~~~v~Gp~~~ 488 (658)
... .+++++..++++.. +....+.+.+.++.+..+.+. ....+.+|||+..
T Consensus 219 ----~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~M 274 (325)
T PTZ00274 219 ----RRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQL 274 (325)
T ss_pred ----HhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHH
Confidence 122 25888888876432 212234444444344444332 2356899999955
No 50
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.81 E-value=2e-18 Score=183.43 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=80.8
Q ss_pred EEEEECccCCCccC-c-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160 356 TASVEGPYGHEVPY-H-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veGPyG~~~~~-~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell 433 (658)
++.|.||+|.++.. . ...+++||||||+||||+++++++++....... ....++.|+|++|+.+|+.+.+++ +++.
T Consensus 137 ~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~-~~~~~v~L~~g~R~~~d~~~~deL-~~l~ 214 (307)
T PLN03116 137 KVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAF-KFGGLAWLFLGVANSDSLLYDDEF-ERYL 214 (307)
T ss_pred EEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccc-cCCCcEEEEEecCCcccchHHHHH-HHHH
Confidence 57899999987542 1 345789999999999999999999876532100 012579999999999998665544 3332
Q ss_pred CCccCCC-CceEEEEEEcCCCCCCCCccccccccccccc----CCCCCCceeEeecCCCchH
Q 006160 434 CPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIY----PVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 434 ~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~----P~~~d~~~~~v~Gp~~~~w 490 (658)
.+. .+++++..++++...+.......+..+.+.. +...+...+.+|||++.+-
T Consensus 215 ----~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv~ 272 (307)
T PLN03116 215 ----KDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP 272 (307)
T ss_pred ----HhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCHHHHH
Confidence 222 2688888888765432111112222222111 1111346678999986543
No 51
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.80 E-value=2.6e-18 Score=182.01 Aligned_cols=204 Identities=19% Similarity=0.268 Sum_probs=143.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCCCCCeEEEEEEEc----
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEGKYHSSVLIKVL---- 190 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~~~~~lsl~IR~~---- 190 (658)
+.+++++.+.+++++..++++.+. .+.|+||||+.|+++..+ ....|+||++|.+.+ ++.++|+||..
T Consensus 34 ~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~ 112 (300)
T PTZ00319 34 QHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGV 112 (300)
T ss_pred EEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCC
Confidence 467888999999999888887542 268999999999997432 246799999998864 48899999986
Q ss_pred -------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCC
Q 006160 191 -------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVP 263 (658)
Q Consensus 191 -------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~ 263 (658)
|..|+.|.+ ++
T Consensus 113 ~~~~~~~G~~S~~L~~-l~------------------------------------------------------------- 130 (300)
T PTZ00319 113 HPSFPNGGRLSQHLYH-MK------------------------------------------------------------- 130 (300)
T ss_pred CCCCCCCCChhhhhhc-CC-------------------------------------------------------------
Confidence 677766621 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 006160 264 PPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPP 343 (658)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (658)
T Consensus 131 -------------------------------------------------------------------------------- 130 (300)
T PTZ00319 131 -------------------------------------------------------------------------------- 130 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCeeEEEEECccCCCccCc---------------cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCc
Q 006160 344 PSRHPLLPPTKITASVEGPYGHEVPYH---------------LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPR 408 (658)
Q Consensus 344 ~~~~~~~~~~~~~v~veGPyG~~~~~~---------------~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~ 408 (658)
+|+ ++.++||+|.+...- ...++++|||||+||||+++++++++.+.. ..+
T Consensus 131 -------~Gd--~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~-----~~~ 196 (300)
T PTZ00319 131 -------LGD--KIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKE-----DRT 196 (300)
T ss_pred -------CCC--EEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCC-----CCc
Confidence 112 477999999763210 123589999999999999999999986431 135
Q ss_pred eEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC-CC-CCcccccccccccccCCCC------CCcee
Q 006160 409 NVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE-PP-LEEGELHKTMSSSIYPVPS------GCAMS 480 (658)
Q Consensus 409 kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~-~~-~~~~~~~~~~v~~~~P~~~------d~~~~ 480 (658)
+++|+|++|+.+++.+.+++.. . ....+++++..++++.. .+ ...+.+...++.+..|... ++..+
T Consensus 197 ~i~liyg~r~~~dl~~~~eL~~--~----~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~v 270 (300)
T PTZ00319 197 KVFLVYANQTEDDILLRKELDE--A----AKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMA 270 (300)
T ss_pred eEEEEEecCCHHHhhHHHHHHH--H----hhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEE
Confidence 7999999999999987776543 2 13446888888887432 11 2233444434444444322 34678
Q ss_pred EeecCCCc
Q 006160 481 VLVGTGNN 488 (658)
Q Consensus 481 ~v~Gp~~~ 488 (658)
.+|||+..
T Consensus 271 yiCGp~~m 278 (300)
T PTZ00319 271 LMCGPPPM 278 (300)
T ss_pred EEECCHHH
Confidence 99999965
No 52
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.80 E-value=3.6e-18 Score=177.61 Aligned_cols=194 Identities=15% Similarity=0.203 Sum_probs=133.9
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
..++++++.+++++++++++.+ ..|+||||+.|+++..+ .|||||++.+ ++.++|+||..|..|..|.+ ++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~ 79 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK 79 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence 4788899999999999999865 48999999999998543 3999999875 27899999999999987743 11
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 80 ~------------------------------------------------------------------------------- 80 (263)
T PRK08221 80 E------------------------------------------------------------------------------- 80 (263)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP 362 (658)
+. ++.|+||
T Consensus 81 ---------------------------------------------------------------------Gd--~v~v~gP 89 (263)
T PRK08221 81 ---------------------------------------------------------------------GD--KLFLRGP 89 (263)
T ss_pred ---------------------------------------------------------------------CC--EEEEECC
Confidence 12 4779999
Q ss_pred cCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160 363 YGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 441 (658)
Q Consensus 363 yG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~ 441 (658)
||..+. +....+++||||||+||||+++++++++++.. ..++++|+|++|+.+++.+.+++. ++. +.
T Consensus 90 ~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~-----~~~~v~L~~g~r~~~~l~~~~el~-~~~-----~~- 157 (263)
T PRK08221 90 YGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ-----EIKSLDLILGFKNPDDILFKEDLK-RWR-----EK- 157 (263)
T ss_pred CCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHHH-HHh-----hc-
Confidence 998443 22346799999999999999999999976431 235899999999999986655443 332 21
Q ss_pred ceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCch
Q 006160 442 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNV 489 (658)
Q Consensus 442 ~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~ 489 (658)
+++++.+++....+ ...+.+... +.+......+...+.+|||+..+
T Consensus 158 -~~~~~~~~~~~~~~~~~~G~v~~~-l~~~~~~~~~~~~vylCGp~~mv 204 (263)
T PRK08221 158 -INLILTLDEGEEGYRGNVGLVTKY-IPELTLKDIDNMQVIVVGPPIMM 204 (263)
T ss_pred -CcEEEEecCCCCCCccCccccChh-hHhccCCCcCCeEEEEECCHHHH
Confidence 23444455543322 122222211 11111111135678999999653
No 53
>PRK05802 hypothetical protein; Provisional
Probab=99.80 E-value=3.7e-18 Score=182.38 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=64.3
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~ 198 (658)
..++++.+.+++++++++++.|.. ..++||||++|+++..+.+..|||||++++.+ ++.++|+||..|.+|+.|.
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~~G~~T~~L~ 143 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEIRGVKTKKIA 143 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEecChhHHHHh
Confidence 578889999999999999987753 35799999999998655677899999999864 4899999999999999884
No 54
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.79 E-value=9.5e-18 Score=176.44 Aligned_cols=209 Identities=17% Similarity=0.166 Sum_probs=139.7
Q ss_pred eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC-----CCcceeEEeeeCCCC---CCCeEEEEEEE
Q 006160 123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS-----WLQWHPFSVSSSPLE---GKYHSSVLIKV 189 (658)
Q Consensus 123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is-----~~q~HPFTIaS~p~~---~~~~lsl~IR~ 189 (658)
.++|++++.+. +++++++++.+..+.|+||||+.|.++... ....|+|||+|.|.+ +.+.++|+||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 57788888886 689999998877789999999999876422 234799999998853 23689999999
Q ss_pred c------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCC
Q 006160 190 L------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG 257 (658)
Q Consensus 190 ~------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 257 (658)
. |..|+.|.+. +
T Consensus 90 ~~~~~~~~~~~~~G~~S~~L~~l-~------------------------------------------------------- 113 (286)
T cd06208 90 LVYTDPETDETKKGVCSNYLCDL-K------------------------------------------------------- 113 (286)
T ss_pred EEEecCCCCceeccchHHHHhhC-C-------------------------------------------------------
Confidence 7 5566655431 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCC
Q 006160 258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS 337 (658)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (658)
T Consensus 114 -------------------------------------------------------------------------------- 113 (286)
T cd06208 114 -------------------------------------------------------------------------------- 113 (286)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCeeEEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 006160 338 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 416 (658)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~v 416 (658)
+|+ +|.|.||+|.++... ...++++|||||+||||+++++++++.+..... ...+++.|+|++
T Consensus 114 -------------~Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~ 177 (286)
T cd06208 114 -------------PGD--DVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADY-KFTGLAWLFFGV 177 (286)
T ss_pred -------------CCC--EEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccc-CCCCCEEEEEEe
Confidence 012 477899999875432 235689999999999999999999987531100 123579999999
Q ss_pred ccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCCCCCCcccccccccccccC-----CCCCCceeEeecCCCc
Q 006160 417 KKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIYP-----VPSGCAMSVLVGTGNN 488 (658)
Q Consensus 417 R~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P-----~~~d~~~~~v~Gp~~~ 488 (658)
|+.+++.+.+++ +++. .+. .+++++..++++...+.......+..+..... -..+.....+|||++.
T Consensus 178 r~~~d~~~~~el-~~l~----~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m 250 (286)
T cd06208 178 PNSDSLLYDDEL-EKYP----KQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLKGM 250 (286)
T ss_pred cCccchhHHHHH-HHHH----HhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCchH
Confidence 999998655443 3332 122 36888888887654221111111221211100 0113357889999874
No 55
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.79 E-value=4.2e-18 Score=176.97 Aligned_cols=193 Identities=15% Similarity=0.185 Sum_probs=131.4
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
.+++++....+++++.++++.+ +.|+||||+.|.++... .||||+++.+ ++.++|+||..|+.|..|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~~---~~~l~~~Vk~~G~~S~~L~~-l~ 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGIG---EGYIDLTIRRVGKVTDEVFT-LK 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCCC---CCeEEEEEEeCchhhHHHHc-CC
Confidence 4678888888888999998764 68999999999998633 4899998853 37899999999999987742 10
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (261)
T TIGR02911 78 E------------------------------------------------------------------------------- 78 (261)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECc
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGP 362 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGP 362 (658)
+. ++.|+||
T Consensus 79 ---------------------------------------------------------------------Gd--~v~i~gP 87 (261)
T TIGR02911 79 ---------------------------------------------------------------------GD--NLFLRGP 87 (261)
T ss_pred ---------------------------------------------------------------------CC--EEEEecC
Confidence 12 4779999
Q ss_pred cCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160 363 YGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 441 (658)
Q Consensus 363 yG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~ 441 (658)
||..+. .....++++|||||+||||+++++++++++.+ ..++|+|+|++|+.+++.+.+++. ++. ...
T Consensus 88 ~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~-----~~~~v~L~~~~r~~~~~~~~~eL~-~l~-----~~~ 156 (261)
T TIGR02911 88 YGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK-----EIKSLNLILGFKTPDDILFKEDIA-EWK-----GNI 156 (261)
T ss_pred CCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----cCceEEEEEecCCHHHhhHHHHHH-HHH-----hcC
Confidence 998543 22346799999999999999999999876431 135899999999999996655543 332 222
Q ss_pred ceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 442 NLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 442 ~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+++..+.+..+.+ ...+.+.. .+.+......+...+.+|||++.
T Consensus 157 --~~~~~~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~v~lCGp~~m 201 (261)
T TIGR02911 157 --NLTLTLDEAEEDYKGNIGLVTK-YIPELTLKDIEEVQAIVVGPPIM 201 (261)
T ss_pred --cEEEEEcCCCCCCcCCeeccCH-hHHhccCCCccceEEEEECCHHH
Confidence 3444444332221 22222222 12221111123456899999965
No 56
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.78 E-value=1.2e-17 Score=172.86 Aligned_cols=191 Identities=22% Similarity=0.321 Sum_probs=139.7
Q ss_pred EEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE--cCchHHHHHHH
Q 006160 124 VDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRDY 200 (658)
Q Consensus 124 ~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~--~G~~T~~L~~~ 200 (658)
++|.+++.+++++++++++.+.. +.++||||+.|++|. ...+|||++|.+.+ ++.++|+|+. .|..|+.+.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~-~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDD-KGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCc-CCcEEEEEEEEeCChHHHHHhhc
Confidence 68999999999998888887654 689999999999998 57799999999974 4655655555 79999988665
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
+ +
T Consensus 86 ---k-~-------------------------------------------------------------------------- 87 (252)
T COG0543 86 ---K-E-------------------------------------------------------------------------- 87 (252)
T ss_pred ---c-C--------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
++ .+.|+
T Consensus 88 -----------------------------------------------------------------------gd--~i~v~ 94 (252)
T COG0543 88 -----------------------------------------------------------------------GD--KIRVR 94 (252)
T ss_pred -----------------------------------------------------------------------CC--EEEEE
Confidence 02 37899
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||+.+......+.+++||||+|++|++++++++.++. . ..+|+++|++|+.+++.+.+++. +.- ..
T Consensus 95 GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~-----~~~V~~~~G~~~~~dl~~~~el~-~~~-----~~ 162 (252)
T COG0543 95 GPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D-----ANKVTLLYGARTAKDLLLLDELE-ELA-----EK 162 (252)
T ss_pred cCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-C-----CceEEEEEeccChhhcccHHHHH-Hhh-----cC
Confidence 999998776434555999999999999999999998754 2 36899999999999997666553 221 11
Q ss_pred CceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 441 LNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 441 ~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+++..++ +++.+..+.+.+..+..+.+. +.....+|||+..
T Consensus 163 ---~~~~~~~--~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M 203 (252)
T COG0543 163 ---EVHPVTD--DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAM 203 (252)
T ss_pred ---cEEEEEC--CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHH
Confidence 4444443 333333444434444444333 5678899999944
No 57
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.77 E-value=5.6e-18 Score=176.25 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=164.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
...++.+.+.++.|+.+.++..|. .+....|||+++.+|-.+....+|||..|.+.+ .+.++|.||.. |.+|+.
T Consensus 52 ~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~~G~mS~~ 130 (286)
T KOG0534|consen 52 YPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYPKGKMSQH 130 (286)
T ss_pred EEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEeccCCcccHH
Confidence 467788888898888777777663 378999999999999888889999999999875 68999999997 888887
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|.++-
T Consensus 131 l~~Lk--------------------------------------------------------------------------- 135 (286)
T KOG0534|consen 131 LDSLK--------------------------------------------------------------------------- 135 (286)
T ss_pred HhcCC---------------------------------------------------------------------------
Confidence 73320
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
.|+ +
T Consensus 136 --------------------------------------------------------------------------iGd--~ 139 (286)
T KOG0534|consen 136 --------------------------------------------------------------------------IGD--T 139 (286)
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 012 5
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 436 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~ 436 (658)
|.++||.|+....-..++++.|||||+||||+++++++++.+.++ ..+|.|++++++.+|+. +++.++++.
T Consensus 140 ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d-----~tki~lly~N~te~DIL-lr~eL~~la--- 210 (286)
T KOG0534|consen 140 VEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPED-----TTKISLLYANKTEDDIL-LREELEELA--- 210 (286)
T ss_pred EEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCC-----CcEEEEEEecCCccccc-hHHHHHHHH---
Confidence 889999998654445689999999999999999999999987642 56899999999999994 444444432
Q ss_pred cCCCC-ceEEEEEEcCCCCC-CCCcccccccccccccCCCCC-CceeEeecCCCc
Q 006160 437 FSDKL-NLETFIYVTRETEP-PLEEGELHKTMSSSIYPVPSG-CAMSVLVGTGNN 488 (658)
Q Consensus 437 ~~~~~-~l~I~iyVT~~~~~-~~~~~~~~~~~v~~~~P~~~d-~~~~~v~Gp~~~ 488 (658)
.++. ++.++.+|++..+. ....+.+.++++....|.+.+ ...+.+|||+..
T Consensus 211 -~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m 264 (286)
T KOG0534|consen 211 -SKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPM 264 (286)
T ss_pred -hhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHH
Confidence 3444 89999999998844 446677788888889998888 699999999954
No 58
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.76 E-value=1.8e-17 Score=170.58 Aligned_cols=86 Identities=8% Similarity=0.044 Sum_probs=62.1
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell~ 434 (658)
+|.|.||.|..+......+++||||||+||||+++++++++.+. .+++.|++++|+.+ ++.+.+++ ++..
T Consensus 92 ~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~~~el-~~~~- 162 (245)
T cd06200 92 SVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFCREEL-EAWQ- 162 (245)
T ss_pred EEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhHHHHH-HHHH-
Confidence 57799988765543234578999999999999999999987643 24689999999984 77555544 3332
Q ss_pred CccCCCCceEEEEEEcCCC
Q 006160 435 PFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~ 453 (658)
.+...+++++.+++++
T Consensus 163 ---~~~~~~~~~~~~s~~~ 178 (245)
T cd06200 163 ---AAGHLARLDLAFSRDQ 178 (245)
T ss_pred ---HCCCcceEEEEEccCC
Confidence 2344577777888764
No 59
>PRK05713 hypothetical protein; Provisional
Probab=99.76 E-value=8.5e-18 Score=178.91 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=133.2
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
..+|++++.+.+++++++++.+..+.|+||||+.|.++. ..+|||||+|.|.+ .+.++|+||.+ |.+|..|. .
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~-~~~l~~~I~~~~~G~~s~~l~-~ 167 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGE-DPFLEFHIDCSRPGAFCDAAR-Q 167 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCC-CCeEEEEEEEcCCCccchhhh-c
Confidence 578888999999999999987667899999999999863 25799999999864 47899999864 77887652 1
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++
T Consensus 168 l~------------------------------------------------------------------------------ 169 (312)
T PRK05713 168 LQ------------------------------------------------------------------------------ 169 (312)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
+|+ +|.+.
T Consensus 170 ----------------------------------------------------------------------~Gd--~v~l~ 177 (312)
T PRK05713 170 ----------------------------------------------------------------------VGD--LLRLG 177 (312)
T ss_pred ----------------------------------------------------------------------CCC--EEEEc
Confidence 012 46689
Q ss_pred CccCCCcc-Ccc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccC
Q 006160 361 GPYGHEVP-YHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFS 438 (658)
Q Consensus 361 GPyG~~~~-~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~ 438 (658)
||+|..+. ... ..+++||||||+||||+++++++++++.. .++|+|+|++|+.+++.+.+++ +++. .
T Consensus 178 ~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~------~~~v~l~~g~r~~~d~~~~~el-~~l~----~ 246 (312)
T PRK05713 178 ELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGH------QGPIRLLHLARDSAGHYLAEPL-AALA----G 246 (312)
T ss_pred cCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC------CCcEEEEEEcCchHHhhhHHHH-HHHH----H
Confidence 99985432 112 45789999999999999999999876541 3579999999999998665544 3332 2
Q ss_pred CCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 439 DKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+..+++++..+++... +.+....+. .+...+.+|||+..
T Consensus 247 ~~~~~~~~~~~~~~~~----------~~l~~~~~~-~~~~~vyiCGp~~m 285 (312)
T PRK05713 247 RHPQLSVELVTAAQLP----------AALAELRLV-SRQTMALLCGSPAS 285 (312)
T ss_pred HCCCcEEEEEECcchh----------hhhhhccCC-CCCeEEEEeCCHHH
Confidence 3346777765553211 111111111 13356789999955
No 60
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.76 E-value=2.9e-20 Score=167.29 Aligned_cols=80 Identities=31% Similarity=0.670 Sum_probs=0.0
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRD 199 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~ 199 (658)
++++++++.+++++++|+++++.. ++|+||||+||++|.++ .+|||||||+|++.+ +.++|+||++|+||++|++
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~--~~i~l~ik~~g~~T~~L~~ 80 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPED--NSITLIIKARGGWTKRLYE 80 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCC--CEEEEEEEeCCCchHHHHH
Confidence 457788899999999999999986 99999999999999999 569999999999973 8999999999999999999
Q ss_pred HHhhc
Q 006160 200 YILSK 204 (658)
Q Consensus 200 ~~~~~ 204 (658)
.+.+.
T Consensus 81 ~~~~~ 85 (105)
T PF08022_consen 81 HLSES 85 (105)
T ss_dssp -----
T ss_pred HHhhh
Confidence 87653
No 61
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.76 E-value=2.7e-17 Score=171.49 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=119.1
Q ss_pred CceEEEEEeCC--CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc-----------CchHHHHHHH
Q 006160 134 CGTVELVLSKP--ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-----------GEWTENLRDY 200 (658)
Q Consensus 134 ~~v~~l~i~~p--~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-----------G~~T~~L~~~ 200 (658)
.+++++++..+ ..+.|.||||+.|.++. ....|||||+|.|+++.+.++|+||.. |..|+.|.++
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~l 92 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGL 92 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhC
Confidence 56999999988 56899999999999874 556899999999865458999999987 6677766431
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
+
T Consensus 93 -k------------------------------------------------------------------------------ 93 (267)
T cd06182 93 -Q------------------------------------------------------------------------------ 93 (267)
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
+++ .+.+.
T Consensus 94 ----------------------------------------------------------------------~Gd--~v~v~ 101 (267)
T cd06182 94 ----------------------------------------------------------------------LGA--KVTVF 101 (267)
T ss_pred ----------------------------------------------------------------------CCC--EEEEE
Confidence 012 47899
Q ss_pred CccC-CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCCccC
Q 006160 361 GPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFS 438 (658)
Q Consensus 361 GPyG-~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~~~~ 438 (658)
||+| .+.......+++||||||+||||+++++++++...... ....++.|+|++|+. +++.+.+++ .++. .
T Consensus 102 ~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~--~~~~~v~l~~g~r~~~~d~~~~del-~~~~----~ 174 (267)
T cd06182 102 IRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG--KARGPAWLFFGCRNFASDYLYREEL-QEAL----K 174 (267)
T ss_pred EecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc--ccCCCEEEEEeCCCCcccccHHHHH-HHHH----h
Confidence 9999 44332233679999999999999999999998642111 123579999999999 888665544 3332 2
Q ss_pred CCCceEEEEEEcCCCC
Q 006160 439 DKLNLETFIYVTRETE 454 (658)
Q Consensus 439 ~~~~l~I~iyVT~~~~ 454 (658)
...+++++..++++..
T Consensus 175 ~~~~~~~~~~~S~~~~ 190 (267)
T cd06182 175 DGALTRLDVAFSREQA 190 (267)
T ss_pred CCCcceEEEEEccCCC
Confidence 3456888888887543
No 62
>PLN02252 nitrate reductase [NADPH]
Probab=99.75 E-value=3.1e-17 Score=194.72 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=148.3
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------- 190 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-------- 190 (658)
..+++++.+.++.++.+++|..+.. +.+.||||++|+++..+....|+||++|.+.+ .+.++|+||.+
T Consensus 635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~ 713 (888)
T PLN02252 635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKF 713 (888)
T ss_pred EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCcc
Confidence 4678899999999999999987643 57899999999997555667899999999864 47999999986
Q ss_pred ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160 191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267 (658)
Q Consensus 191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 267 (658)
|.+|+.|.+ +
T Consensus 714 p~gG~~S~~L~~-L------------------------------------------------------------------ 726 (888)
T PLN02252 714 PNGGLMSQYLDS-L------------------------------------------------------------------ 726 (888)
T ss_pred CCCCchhhHHhc-C------------------------------------------------------------------
Confidence 556655521 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (658)
T Consensus 727 -------------------------------------------------------------------------------- 726 (888)
T PLN02252 727 -------------------------------------------------------------------------------- 726 (888)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEECccCCCccC----------ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 006160 348 PLLPPTKITASVEGPYGHEVPY----------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 417 (658)
Q Consensus 348 ~~~~~~~~~v~veGPyG~~~~~----------~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR 417 (658)
.+|. +|.|+||+|.+... ....++++|||||+||||++++|++++++.+ ..++|+|+|++|
T Consensus 727 --~vGd--~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~-----d~t~i~Liyg~R 797 (888)
T PLN02252 727 --PIGD--TIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPE-----DKTEMSLVYANR 797 (888)
T ss_pred --CCCC--EEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccC-----CCCcEEEEEEEC
Confidence 0112 47799999975211 1235799999999999999999999987532 235799999999
Q ss_pred cCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCC--CCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 418 KSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRET--EPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 418 ~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~--~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
+.+|+.+.+++ +++. .+. .+++++..+|++. .+....+.+...++....+...+...+.+|||+.-+-
T Consensus 798 t~~Dil~~eEL-~~la----~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vyiCGPp~Mi~ 868 (888)
T PLN02252 798 TEDDILLREEL-DRWA----AEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLALMCGPPPMIE 868 (888)
T ss_pred CHHHhhHHHHH-HHHH----HhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEEEeCCHHHHH
Confidence 99998665544 3332 122 4688888888753 2222334444444555555544567899999996543
No 63
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.75 E-value=6.2e-17 Score=175.41 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=81.0
Q ss_pred EEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~ 434 (658)
+|.|.||+|..+... ...+++||||||+||||+++++++++....... ....++.|+|++|+.+|+.+.+++. ++.
T Consensus 197 ~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~-~~~~~v~Lf~G~R~~~dlly~dELe-~l~- 273 (367)
T PLN03115 197 EVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPTSSSLLYKEEFE-KMK- 273 (367)
T ss_pred EEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccc-cCCCcEEEEEccCCHHHhhHHHHHH-HHH-
Confidence 477899999875321 344689999999999999999998765432111 0135799999999999886665543 322
Q ss_pred CccCCC-CceEEEEEEcCCCCCCCCcccccccccccccCC-----CCCCceeEeecCCC
Q 006160 435 PFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSSIYPV-----PSGCAMSVLVGTGN 487 (658)
Q Consensus 435 ~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~-----~~d~~~~~v~Gp~~ 487 (658)
.+. .+++++..++++.+.+.+.....+..+.+.... ..+...+.+|||.+
T Consensus 274 ---~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~~ 329 (367)
T PLN03115 274 ---EKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKG 329 (367)
T ss_pred ---HhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCHH
Confidence 222 378999999987643322222223322221110 12457889999974
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.74 E-value=8.7e-17 Score=177.35 Aligned_cols=88 Identities=16% Similarity=0.318 Sum_probs=63.4
Q ss_pred EEEEECccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~ 434 (658)
+|.|.||||..+..- ...+++||||||+||||++++++++......+ ...+++|+|++|+.+++.+++++. ++.
T Consensus 249 ~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~---~~~~v~L~~G~Rt~~dl~y~~eL~-~l~- 323 (411)
T TIGR03224 249 KVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG---EGGKLMLFFGARTKEELPYFGPLQ-KLP- 323 (411)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC---CCCCEEEEEecCccccchHHHHHH-HHH-
Confidence 578999999865421 23468999999999999999999987643211 236899999999999998776653 322
Q ss_pred CccCCCCceEEEEEEcCCC
Q 006160 435 PFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~ 453 (658)
.. .+++++.++++.
T Consensus 324 ---~~--~~~~~~~~sr~~ 337 (411)
T TIGR03224 324 ---KD--FIDINFAFSRTP 337 (411)
T ss_pred ---hc--CceEEEEeccCC
Confidence 12 245666666654
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.70 E-value=3e-16 Score=185.41 Aligned_cols=191 Identities=16% Similarity=0.222 Sum_probs=135.6
Q ss_pred EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
+++++.+.++++++.+++..|. ...++||||++|+++..+ ++|||||+|.+.+ ++.++|+||..|.+|+.|.++ .
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~-~g~i~~~vk~vG~~T~~L~~l-~ 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPE-KGTITLVIQEVGLSTTKLCEL-N 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCC-CCEEEEEEEEcCchHHHHhcC-C
Confidence 4678888899999999998765 357999999999997533 4799999999864 489999999999999988532 0
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (752)
T PRK12778 78 E------------------------------------------------------------------------------- 78 (752)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG 361 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG 361 (658)
++ ++ .|.|
T Consensus 79 ---------------------------------------------------------------------Gd--~v~~v~G 87 (752)
T PRK12778 79 ---------------------------------------------------------------------GD--YITDVVG 87 (752)
T ss_pred ---------------------------------------------------------------------CC--EeCeEeC
Confidence 12 46 6999
Q ss_pred ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC
Q 006160 362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL 441 (658)
Q Consensus 362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~ 441 (658)
|||+++.. ...++++|||||+||||+++++++++++. .+|+++|++|+.+++.+.+++. ++. .
T Consensus 88 P~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~l~~~~el~-~~~-----~-- 150 (752)
T PRK12778 88 PLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKELIILEDEMR-ESS-----D-- 150 (752)
T ss_pred CCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHHhhhHHHHH-hhc-----C--
Confidence 99998654 34579999999999999999999997643 3799999999999997665553 221 1
Q ss_pred ceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchH
Q 006160 442 NLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVW 490 (658)
Q Consensus 442 ~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w 490 (658)
++ +++.++.+....+. .+..+....+...+...+.+|||+.-+-
T Consensus 151 --~~--~~~t~dg~~g~~G~-v~~~l~~~~~~~~~~~~vy~CGP~~M~~ 194 (752)
T PRK12778 151 --EV--IIMTDDGSYGRKGL-VTDGLEEVIKRETKVDKVFAIGPAIMMK 194 (752)
T ss_pred --eE--EEEECCCCCCCccc-HHHHHHHHhhcCCCCCEEEEECCHHHHH
Confidence 12 22223332222222 2223333333222234689999996643
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.69 E-value=1.1e-15 Score=183.41 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=60.6
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENL 197 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L 197 (658)
...+|++++.++++++.+++..|.. ..|+||||+.|.++..+ ++|||||++.+.+ +++++|+||..|..|+.|
T Consensus 649 ~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~-~g~i~l~Vk~vG~~T~~L 722 (944)
T PRK12779 649 IPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAE-KGTIDLVVQGMGTSSLEI 722 (944)
T ss_pred eEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCC-CCEEEEEEEeeccHHHHH
Confidence 3578889999999999999987753 57999999999986433 4699999998753 488999999999888766
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.69 E-value=1.3e-15 Score=184.16 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=114.6
Q ss_pred EEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcCchHHHHHHHHh
Q 006160 124 VDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLRDYIL 202 (658)
Q Consensus 124 ~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~~~~~ 202 (658)
.+|++.+.+..+++.+++..|. ...|+|||||.|+++.. .+++||||++.+.+ .++++|+||..|..|+.|++.+.
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~-~g~i~l~vk~vG~~T~~L~~~lk 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRK-KGTITMVVQALGKTTREMMTKFK 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCC-CCEEEEEEEecCcHHHHHHhcCC
Confidence 4678888999999999998875 46899999999998753 24799999998753 48999999999999999865431
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 203 SKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPP 282 (658)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (658)
.
T Consensus 79 ~------------------------------------------------------------------------------- 79 (1006)
T PRK12775 79 A------------------------------------------------------------------------------- 79 (1006)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEE-EEEC
Q 006160 283 QGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITA-SVEG 361 (658)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~veG 361 (658)
|+ .+ .+.|
T Consensus 80 ---------------------------------------------------------------------Gd--~l~~v~G 88 (1006)
T PRK12775 80 ---------------------------------------------------------------------GD--TFEDFVG 88 (1006)
T ss_pred ---------------------------------------------------------------------CC--EEeeeec
Confidence 12 24 6999
Q ss_pred ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 362 PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 362 PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
|||.++.. ..++++||||||+||||++++++++.+.. .+|+++|+.|+.+++.+.+++
T Consensus 89 PlG~~~~~-~~~~~vllVaGGiGIAPl~s~~r~l~~~g--------~~v~li~g~R~~~~l~~~del 146 (1006)
T PRK12775 89 PLGLPQHI-DKAGHVVLVGGGLGVAPVYPQLRAFKEAG--------ARTTGIIGFRNKDLVFWEDKF 146 (1006)
T ss_pred CCCCCCCC-CCCCeEEEEEEhHHHHHHHHHHHHHHhCC--------CcEEEEEeCCChHHcccHHHH
Confidence 99987653 34679999999999999999999986543 369999999999887665544
No 68
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.67 E-value=2e-15 Score=159.26 Aligned_cols=74 Identities=11% Similarity=0.024 Sum_probs=59.3
Q ss_pred ceEEEEEEEEec----CceEEEEEeCCC-------CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE-
Q 006160 122 RTVDVLSASCLP----CGTVELVLSKPA-------NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV- 189 (658)
Q Consensus 122 ~~~~v~sv~~l~----~~v~~l~i~~p~-------~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~- 189 (658)
...++++.+.++ .++..++++.+. ...|.||||+.|..++ ....|||||+|.+.+ +.++|+||.
T Consensus 46 ~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g--~~~~R~YSias~p~~--g~l~l~Vk~~ 121 (289)
T cd06201 46 KALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPG--SDVPRFYSLASSSSD--GFLEICVRKH 121 (289)
T ss_pred cceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCC--CCCCceEecCCCCCC--CeEEEEEEeC
Confidence 467888888887 589999998765 4679999999998653 345699999999853 799999998
Q ss_pred -cCchHHHHHH
Q 006160 190 -LGEWTENLRD 199 (658)
Q Consensus 190 -~G~~T~~L~~ 199 (658)
.|..|+.|.+
T Consensus 122 ~~G~~S~~L~~ 132 (289)
T cd06201 122 PGGLCSGYLHG 132 (289)
T ss_pred CCccchhhHhh
Confidence 5888888754
No 69
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.60 E-value=3e-14 Score=175.23 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=141.3
Q ss_pred eEEEEEEE---EecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc-CchHH
Q 006160 123 TVDVLSAS---CLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-GEWTE 195 (658)
Q Consensus 123 ~~~v~sv~---~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-G~~T~ 195 (658)
++++.+++ .+..++..++|..|.. +.|.|||||.|+++..+....++||++|.|++ .+.++|+||.. |.+|+
T Consensus 916 ~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~~~G~~S~ 994 (1167)
T PTZ00306 916 TVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARGDKGTLKE 994 (1167)
T ss_pred EEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEcCCChhHH
Confidence 56666665 3467877888876643 57999999999986434445799999999964 47899999984 88888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 196 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 275 (658)
Q Consensus 196 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (658)
.|.+ +..
T Consensus 995 ~L~~-l~~------------------------------------------------------------------------ 1001 (1167)
T PTZ00306 995 WISA-LRP------------------------------------------------------------------------ 1001 (1167)
T ss_pred HHhh-CCC------------------------------------------------------------------------
Confidence 8732 110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCee
Q 006160 276 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 355 (658)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (658)
++
T Consensus 1002 ----------------------------------------------------------------------------Gd-- 1003 (1167)
T PTZ00306 1002 ----------------------------------------------------------------------------GD-- 1003 (1167)
T ss_pred ----------------------------------------------------------------------------CC--
Confidence 12
Q ss_pred EEEEECccCCC---------cc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhH
Q 006160 356 TASVEGPYGHE---------VP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLL 425 (658)
Q Consensus 356 ~v~veGPyG~~---------~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l 425 (658)
+|.|.||+|.. +. .....++++|||||+||||+++++++++++.... ..++|+|+|++|+.+++.+.
T Consensus 1004 ~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~---~~~~i~Llyg~r~~~dl~~~ 1080 (1167)
T PTZ00306 1004 SVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVD---SIESIRLIYAAEDVSELTYR 1080 (1167)
T ss_pred EEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccC---CCceEEEEEEeCCHHHhhHH
Confidence 46678888731 11 1134578999999999999999999998643101 13589999999999999765
Q ss_pred HHHHHhccCCccCCC-CceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160 426 SNFYKESICPFFSDK-LNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 426 ~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+++ .++. .+. .+++++..++++.+.+. ..+.+...++.++.+.+.+.....+|||+..
T Consensus 1081 ~eL-~~l~----~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306 1081 ELL-ESYR----KENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICGPPVM 1140 (1167)
T ss_pred HHH-HHHH----HHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeCCHHH
Confidence 554 3332 122 35888888887543222 2343444445566555555677899999854
No 70
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.59 E-value=2.8e-14 Score=145.86 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=57.2
Q ss_pred EEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC-------------------CCcceeEEeeeCCCCCCCeE
Q 006160 126 VLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS-------------------WLQWHPFSVSSSPLEGKYHS 183 (658)
Q Consensus 126 v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is-------------------~~q~HPFTIaS~p~~~~~~l 183 (658)
|++++.+++++++|+++.+.. ..|.||||+.|.++..+ ...+|+||+++.+.+ .+++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l 79 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGEL 79 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEE
Confidence 356778899999999988764 68899999999998543 567899999998753 4899
Q ss_pred EEEEEEc---CchHHHH
Q 006160 184 SVLIKVL---GEWTENL 197 (658)
Q Consensus 184 sl~IR~~---G~~T~~L 197 (658)
+|.|+.. |..|+.|
T Consensus 80 ~~~v~~~~~~G~~s~~l 96 (235)
T cd06193 80 DIDFVLHGDEGPASRWA 96 (235)
T ss_pred EEEEEeCCCCCchHHHH
Confidence 9999887 5567766
No 71
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.38 E-value=9.5e-13 Score=134.25 Aligned_cols=155 Identities=16% Similarity=0.290 Sum_probs=115.8
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHH
Q 006160 316 GGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDI 395 (658)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~l 395 (658)
.++-+.+.++++|||..+..+...+++..+++ .|++ +|.|.||||.++.. .....+||++||.|.+|+.|.+-|+
T Consensus 223 ~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sL--KpGD--KvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDq 297 (410)
T COG2871 223 KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSL--KPGD--KVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQ 297 (410)
T ss_pred cCeEEEEEEeccCCCCCCCCCccceeeeEEee--cCCC--eEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHH
Confidence 46667788889999999888888888888876 7888 47899999998754 4567899999999999999999999
Q ss_pred HHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcc---ccccccc---cc
Q 006160 396 LHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEG---ELHKTMS---SS 469 (658)
Q Consensus 396 l~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~---~~~~~~v---~~ 469 (658)
+.+..+ .|++.|.|+.|+.++.-+.+++ +++ ..+.+++.-|+.++.+..++.+.+ .+...+. .+
T Consensus 298 L~rlhS-----kRkis~WYGARS~rE~fY~Ed~-d~L----~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk 367 (410)
T COG2871 298 LKRLHS-----KRKISFWYGARSLREMFYQEDF-DQL----QAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLK 367 (410)
T ss_pred HHhhcc-----cceeeeeeccchHHHhHHHHHH-HHH----HhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhh
Confidence 987643 4799999999999988555443 233 357789999999998765433322 2222221 22
Q ss_pred ccCCCCCCceeEeecCC
Q 006160 470 IYPVPSGCAMSVLVGTG 486 (658)
Q Consensus 470 ~~P~~~d~~~~~v~Gp~ 486 (658)
-.|.| ++..+-+|||+
T Consensus 368 ~h~aP-EDceyYmCGPp 383 (410)
T COG2871 368 DHEAP-EDCEYYMCGPP 383 (410)
T ss_pred cCCCc-hheeEEeeCcc
Confidence 23444 45677899998
No 72
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.29 E-value=8.7e-12 Score=135.60 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=72.1
Q ss_pred EEEEECccC-CCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160 356 TASVEGPYG-HEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veGPyG-~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell 433 (658)
+|.+.+|.| .+.........+||||||+||||+++++++.+.... ..++.|+|++|+. +|+.+.+++ ++..
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~D~~y~~el-~~~~ 267 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA------KGKNWLFFGERHFATDFLYQDEL-QQWL 267 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC------CCcEEEEEcCCCCccchhHHHHH-HHHH
Confidence 356666555 443222345799999999999999999998875431 3579999999997 577554444 3332
Q ss_pred CCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCC----CCCCceeEeecCCCc
Q 006160 434 CPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPV----PSGCAMSVLVGTGNN 488 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~----~~d~~~~~v~Gp~~~ 488 (658)
.....++++..++|+.... + ..+..+.+.... ..+.....+|||.+.
T Consensus 268 ----~~~~~~~~~~a~Sr~~~~~---~-yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~ 318 (360)
T cd06199 268 ----KDGVLTRLDTAFSRDQAEK---V-YVQDRMREQGAELWAWLEEGAHFYVCGDAKR 318 (360)
T ss_pred ----HcCCCeEEEEEEccCCCCC---c-cHHHHHHHhHHHHHHHHhCCCEEEEECCCcc
Confidence 2334567888888865321 1 111111111110 112466779999965
No 73
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.28 E-value=4.8e-11 Score=130.87 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=78.8
Q ss_pred CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHh
Q 006160 353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKE 431 (658)
Q Consensus 353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~e 431 (658)
..+.+.+.||+|.+.......+.+||||||+||||+++++++.......+. ...++.|+|++|+. +|+.+.+++ ++
T Consensus 210 d~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~ly~~el-~~ 286 (384)
T cd06206 210 DSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGR--KLAPALLFFGCRHPDHDDLYRDEL-EE 286 (384)
T ss_pred CeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCC--CcCCEEEEEeCCCCCcccchHHHH-HH
Confidence 456777899999865433356789999999999999999998865432111 23579999999999 677555444 33
Q ss_pred ccCCccCCCCceEEEEEEcCCCCCCCCccccccccccc----ccCCCCCCceeEeecCCC
Q 006160 432 SICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSS----IYPVPSGCAMSVLVGTGN 487 (658)
Q Consensus 432 ll~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~----~~P~~~d~~~~~v~Gp~~ 487 (658)
.. +..+++++..++++.+. ..+ ..+..+.. +.....+.....+|||..
T Consensus 287 ~~-----~~~~~~l~~a~Sr~~~~--~~~-yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~ 338 (384)
T cd06206 287 WE-----AAGVVSVRRAYSRPPGG--GCR-YVQDRLWAEREEVWELWEQGARVYVCGDGR 338 (384)
T ss_pred HH-----HCCCeEEEEEecccCCC--CCE-echhhHHhhHHHHHHHHHCCcEEEEECCCc
Confidence 32 23457888888876432 111 11111100 000011356678999997
No 74
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.23 E-value=2.4e-11 Score=140.25 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=56.7
Q ss_pred EEEECccCC-CccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhccC
Q 006160 357 ASVEGPYGH-EVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESIC 434 (658)
Q Consensus 357 v~veGPyG~-~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell~ 434 (658)
|.|.||.|. +.........++|||||+|||||+++++++..+.. ..++.|+|++|+ .+|+.+.+++. +..
T Consensus 433 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~g~~~LffG~R~~~~D~ly~~El~-~~~- 504 (597)
T TIGR01931 433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA------KGKNWLFFGNPHFTTDFLYQVEWQ-NYL- 504 (597)
T ss_pred EEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC------CCCEEEEECCCCCCcchhHHHHHH-HHH-
Confidence 556666554 43222345689999999999999999998876542 357999999999 66776555443 322
Q ss_pred CccCCCCceEEEEEEcCC
Q 006160 435 PFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~ 452 (658)
.+....+++...+|+
T Consensus 505 ---~~~~l~~l~~afSRd 519 (597)
T TIGR01931 505 ---KKGVLTKMDLAFSRD 519 (597)
T ss_pred ---HcCCCceeEEEEecC
Confidence 122234466667774
No 75
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.23 E-value=7.4e-11 Score=129.32 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=64.0
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~ 434 (658)
++.+.||+|.+.........+||||||+|||||++++++.....+.+ ....++.|+|++|+. +|+.+.+++ ++..
T Consensus 213 ~v~v~~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~--~~~~~~~L~~G~R~~~~d~~y~~el-~~~~- 288 (382)
T cd06207 213 RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKDYLYKEEL-EEYE- 288 (382)
T ss_pred EEEEEEECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC--ccCCCEEEEECCCCCCccccHHHHH-HHHH-
Confidence 46788899975433233578999999999999999999876542211 124689999999998 777554444 3332
Q ss_pred CccCCCCceEEEEEEcCCCC
Q 006160 435 PFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~~ 454 (658)
.....+++++..+|+..
T Consensus 289 ---~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 289 ---KSGVLTTLGTAFSRDQP 305 (382)
T ss_pred ---hCCCCceEEEEecCCCC
Confidence 23345678888887653
No 76
>PRK06214 sulfite reductase; Provisional
Probab=99.20 E-value=1.5e-10 Score=131.21 Aligned_cols=124 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHh
Q 006160 353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKE 431 (658)
Q Consensus 353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~e 431 (658)
..+.+.+.+|+| +.........+||||||+|||||++++++.+.... ..++.|+|++|+ .+|+.+.++ +++
T Consensus 364 d~V~v~i~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~------~g~~~LffG~R~~~~D~ly~dE-L~~ 435 (530)
T PRK06214 364 TRVRVYVQKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKA------PGRNWLFFGHQRSATDFFYEDE-LNG 435 (530)
T ss_pred CEEEEEecCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcC------CCCeEEEEEecCChhhhHHHHH-HHH
Confidence 556777888888 43222345689999999999999999998765431 357899999966 456644443 333
Q ss_pred ccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 432 SICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 432 ll~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.. ......++++..+|+........+...+....+.....+.....||||...
T Consensus 436 l~----~~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~ 488 (530)
T PRK06214 436 LK----AAGVLTRLSLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKR 488 (530)
T ss_pred HH----HhCCceEEEEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHH
Confidence 32 123334566777776432111111110000011001123466789999865
No 77
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.17 E-value=4.1e-10 Score=124.11 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=75.0
Q ss_pred EEEEC-ccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160 357 ASVEG-PYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 433 (658)
Q Consensus 357 v~veG-PyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell 433 (658)
+.+.| |.|.+..... ....++|||||+||||+++++++..+..+........++.|+|++|+. +|+.+.+++ ++..
T Consensus 223 v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El-~~~~ 301 (398)
T cd06203 223 VPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDEL-EEFL 301 (398)
T ss_pred EEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHH-HHHH
Confidence 55677 5665433222 357899999999999999999988653211111124679999999998 677655544 3332
Q ss_pred CCccCCCCceEEEEEEcCCCCCCCCcccccccccccccCC-----CCCCceeEeecCCCc
Q 006160 434 CPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPV-----PSGCAMSVLVGTGNN 488 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~-----~~d~~~~~v~Gp~~~ 488 (658)
.+....++++.++|++..+...+ .++..+.+.... ........+|||...
T Consensus 302 ----~~~~~~~~~~a~SRd~~~~g~k~-yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~ 356 (398)
T cd06203 302 ----EEGILTRLIVAFSRDENDGSTPK-YVQDKLEERGKKLVDLLLNSNAKIYVCGDAKG 356 (398)
T ss_pred ----HcCCCceEEEEECCCCCCCCCce-ecchHHHhCHHHHHHHHhcCCcEEEEECCcch
Confidence 23334567777888755322222 222222211110 113466789999765
No 78
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.07 E-value=2.1e-09 Score=127.69 Aligned_cols=76 Identities=24% Similarity=0.160 Sum_probs=62.3
Q ss_pred eEEEEEEEEecCceEEEEEeCCCC-CCcCCCcEEEEEeCCCC--CC-cceeEEeeeCCCCCCCeEEEEEEEcCchHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPAN-LRYNALSFFFLQVRELS--WL-QWHPFSVSSSPLEGKYHSSVLIKVLGEWTENLR 198 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~-~~~~PGQ~v~L~vp~is--~~-q~HPFTIaS~p~~~~~~lsl~IR~~G~~T~~L~ 198 (658)
..+|++.+.+.++++++++..|.. -.++||||+.|++++.+ .+ ...||||++.+.+ ++.++|++|.+|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEEChHHHHHh
Confidence 468889999999999999988763 46899999999986432 22 4568999998764 5889999999999999884
Q ss_pred H
Q 006160 199 D 199 (658)
Q Consensus 199 ~ 199 (658)
+
T Consensus 871 ~ 871 (1028)
T PRK06567 871 T 871 (1028)
T ss_pred c
Confidence 4
No 79
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.06 E-value=1.5e-09 Score=120.29 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=60.8
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCC
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICP 435 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~ 435 (658)
+.+.+|.|.+.........+||||||+||||+++++++.....+.+. ...++.|+|++|+. +|+.+.+++ ++..
T Consensus 249 v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~--~~~~v~L~~G~R~~~~d~ly~~el-~~~~-- 323 (416)
T cd06204 249 VPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGK--KVGPTLLFFGCRHPDEDFIYKDEL-EEYA-- 323 (416)
T ss_pred EEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC--ccCCEEEEEcCCCCCcccchHHHH-HHHH--
Confidence 44555778654322345799999999999999999998765332111 23579999999998 677555443 3332
Q ss_pred ccCCCCceEEEEEEcCCC
Q 006160 436 FFSDKLNLETFIYVTRET 453 (658)
Q Consensus 436 ~~~~~~~l~I~iyVT~~~ 453 (658)
.....++++..++|+.
T Consensus 324 --~~~~~~~l~~a~Sr~~ 339 (416)
T cd06204 324 --KLGGLLELVTAFSREQ 339 (416)
T ss_pred --HcCCceEEEEEECcCC
Confidence 2334577888888764
No 80
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.97 E-value=3.3e-09 Score=93.66 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=61.9
Q ss_pred EEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160 124 VDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 198 (658)
Q Consensus 124 ~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~ 198 (658)
+++++++.+++++..+++..+. .+.|.||||+.|+++..+...+||||++|.+.+ ++.++|+||.. |.+|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEeccCCHHHHHHH
Confidence 6788999999998888887663 367999999999999555678999999999964 57999999999 88999884
Q ss_pred H
Q 006160 199 D 199 (658)
Q Consensus 199 ~ 199 (658)
+
T Consensus 81 ~ 81 (99)
T PF00970_consen 81 Q 81 (99)
T ss_dssp T
T ss_pred h
Confidence 3
No 81
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.93 E-value=2.7e-09 Score=123.12 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=58.6
Q ss_pred EEEEECccCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhcc
Q 006160 356 TASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veGPyG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell 433 (658)
++.|.||.|+.+. .......+||||+|+|||||++++++...... ..++.|+|++|+ ..|+.+-+++ ++..
T Consensus 435 ~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~------~~~~~LffG~R~~~~D~lY~~El-~~~~ 507 (600)
T PRK10953 435 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGA------PGKNWLFFGNPHFTEDFLYQVEW-QRYV 507 (600)
T ss_pred EEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCC------CCCeEEEeeccCCccchhHHHHH-HHHH
Confidence 4667788865433 22345799999999999999999998865431 357999999998 5676544443 3332
Q ss_pred CCccCCCCceEEEEEEcCCCC
Q 006160 434 CPFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~~ 454 (658)
. +..-.+++...+|+..
T Consensus 508 ~----~g~l~~l~~afSRd~~ 524 (600)
T PRK10953 508 K----EGLLTRIDLAWSRDQK 524 (600)
T ss_pred H----cCCcceEEEEECCCCC
Confidence 1 2222346677777653
No 82
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.89 E-value=1.8e-08 Score=111.41 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=52.2
Q ss_pred ccceEEEEEcCcchhhhHHHHHHHHHhhc--cCCCCCCceEEEEEeeccC-cchhhHHHHHHhccCCccCCCCceEEEEE
Q 006160 372 MYENLILVAGGIGISPFLAILSDILHRIN--EGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESICPFFSDKLNLETFIY 448 (658)
Q Consensus 372 ~~~~vvlVAGGiGITP~lsil~~ll~~~~--~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~~~~~~~~~l~I~iy 448 (658)
....+||||||+|||||++++++.....+ ........++.|++++|+. +|+.+.++ +++.. ......+++..
T Consensus 245 ~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~E-l~~~~----~~~~~~~~~~a 319 (406)
T cd06202 245 PSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEE-TEEAK----NKGVLTEVYTA 319 (406)
T ss_pred CCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHH-HHHHH----HcCCCceEEEE
Confidence 45789999999999999999998654321 0011124689999999999 67655444 33332 23344567788
Q ss_pred EcCCC
Q 006160 449 VTRET 453 (658)
Q Consensus 449 VT~~~ 453 (658)
++|+.
T Consensus 320 ~SR~~ 324 (406)
T cd06202 320 LSREP 324 (406)
T ss_pred EcCCC
Confidence 88864
No 83
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=98.83 E-value=9.5e-09 Score=93.98 Aligned_cols=79 Identities=28% Similarity=0.484 Sum_probs=55.7
Q ss_pred hhhhhhh-------HHHHHHHHHHHhhhhHH-HHHHhhhhccccchhHHHHHHHHHHHHHHchhhHh-hhcchHHHHHHH
Q 006160 11 ILRWCSL-------RFTGYFMIAWDIQGRLV-QELLAWRNIGIANFPGVISLLAGLMMWATSFHPVR-KHFFQLFFYTHQ 81 (658)
Q Consensus 11 ~HRW~a~-------~h~~~y~i~w~~~~~~~-~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iR-r~~YE~F~~~H~ 81 (658)
+|||+|+ .|++.|.+.|...+... .+.......+..+.+|+++++++++|+++|++++| |+.||.|+++|+
T Consensus 36 ~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~ 115 (125)
T PF01794_consen 36 FHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHI 115 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999993 34555555555433210 11111122345688999999999999999999999 889999999999
Q ss_pred HHHHHhhh
Q 006160 82 LYVVFVVF 89 (658)
Q Consensus 82 l~ilflv~ 89 (658)
++++++++
T Consensus 116 ~~~~~~~l 123 (125)
T PF01794_consen 116 LFYIAFLL 123 (125)
T ss_pred HHHHHHHH
Confidence 98654443
No 84
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.78 E-value=7.6e-09 Score=92.33 Aligned_cols=99 Identities=18% Similarity=0.318 Sum_probs=61.8
Q ss_pred EEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCC-ceEEEEEEcCCCC-C
Q 006160 378 LVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKL-NLETFIYVTRETE-P 455 (658)
Q Consensus 378 lVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~-~l~I~iyVT~~~~-~ 455 (658)
|||||+||||+++++++++++. ..++|+|+|++|+.+++.+.+++. ++. .... ++.+..+ .+... +
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~-~~~----~~~~~~~~~~~~-~~~~~~~ 68 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN------DNRKVTLFYGARTPEDLLFRDELE-ALA----QEYPNRFHVVYV-SSPDDGW 68 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT------CTSEEEEEEEESSGGGSTTHHHHH-HHH----HHSTTCEEEEEE-TTTTSST
T ss_pred CeecceeHHHHHHHHHHHHHhC------CCCCEEEEEEEcccccccchhHHH-HHH----hhcccccccccc-ccccccc
Confidence 7999999999999999999873 246899999999999997665543 322 1122 3444333 22222 2
Q ss_pred CCCcccccccccccccC--CCCCCceeEeecCCCc
Q 006160 456 PLEEGELHKTMSSSIYP--VPSGCAMSVLVGTGNN 488 (658)
Q Consensus 456 ~~~~~~~~~~~v~~~~P--~~~d~~~~~v~Gp~~~ 488 (658)
....+.+...+.....+ ...+...+.+|||+..
T Consensus 69 ~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m 103 (109)
T PF00175_consen 69 DGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPM 103 (109)
T ss_dssp TSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHH
T ss_pred CCceeehhHHHHHhhcccccCCCCCEEEEECCHHH
Confidence 22233333333233322 1235678999999854
No 85
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=2e-07 Score=105.71 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.8
Q ss_pred EECccC
Q 006160 359 VEGPYG 364 (658)
Q Consensus 359 veGPyG 364 (658)
+|+|.-
T Consensus 622 ~e~~Mr 627 (1102)
T KOG1924|consen 622 PEVPMR 627 (1102)
T ss_pred CCCccc
Confidence 444544
No 86
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=97.85 E-value=0.00011 Score=75.65 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-----cceEEEEEEEEecCceEEEEEeCCC----CCCcCCCcEEEEEe--CCCCCCcc
Q 006160 99 FSMAAGGIFLFILDRFLRFCQS-----RRTVDVLSASCLPCGTVELVLSKPA----NLRYNALSFFFLQV--RELSWLQW 167 (658)
Q Consensus 99 ~~~~~~~i~l~~~Dr~~R~~r~-----~~~~~v~sv~~l~~~v~~l~i~~p~----~~~~~PGQ~v~L~v--p~is~~q~ 167 (658)
|.-.+.+++=.++|-=-..+++ ...+.+...+...+|+.++.+.... .....|||||-++- |+.+.-..
T Consensus 122 Ws~aYgava~i~i~~EKK~Yq~~~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~ 201 (385)
T KOG3378|consen 122 WSQAYGAVAQIMIDSEKKVYQSRGWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTL 201 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHH
Confidence 3335666655555543344443 3467788777788999999886321 24678999999874 33332112
Q ss_pred eeEEeeeCCCCCCCeEEEEEEEc
Q 006160 168 HPFSVSSSPLEGKYHSSVLIKVL 190 (658)
Q Consensus 168 HPFTIaS~p~~~~~~lsl~IR~~ 190 (658)
+=++.+.......+.+.|.+|..
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~~ 224 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRRV 224 (385)
T ss_pred HHHHHhhhhhhhccceeEEEeeh
Confidence 22333333333457888988887
No 87
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00017 Score=83.08 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=64.9
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKESICPFFSDKLNLETFIYVTR 451 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~ 451 (658)
...++|||-|+|||||.+++++-..+.. ..++.|++++|+ ..|+.+-++ .++.. .+....++....+|
T Consensus 440 ~~PiIMIG~GTGIAPFRafvq~r~~~~~------~gk~wLfFG~R~~~~DfLY~~E-we~~~----~~G~~~~l~~AfSR 508 (587)
T COG0369 440 ETPIIMIGPGTGIAPFRAFVQERAANGA------EGKNWLFFGCRHFTEDFLYQEE-WEEYL----KDGVLTRLDLAFSR 508 (587)
T ss_pred CCceEEEcCCCCchhHHHHHHHHHhccc------cCceEEEecCCCCccchhhHHH-HHHHH----hcCCceeEEEEEee
Confidence 3889999999999999999998876652 237999999999 555544333 33322 23346788888998
Q ss_pred CCCCCCCcccccc---cccccccCCCCCCceeEeecCCCc
Q 006160 452 ETEPPLEEGELHK---TMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 452 ~~~~~~~~~~~~~---~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+........+... +.+..+ .++.....|||-..+
T Consensus 509 dq~~KiYVQd~lre~~del~~~---l~~ga~~YVCGd~~~ 545 (587)
T COG0369 509 DQEEKIYVQDRLREQADELWEW---LEEGAHIYVCGDAKG 545 (587)
T ss_pred cCCCCccHHHHHHHhHHHHHHH---HHCCCEEEEeCCCcc
Confidence 8653333222111 111111 123467789996544
No 88
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=97.55 E-value=0.00043 Score=80.12 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEc
Q 006160 371 LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVT 450 (658)
Q Consensus 371 ~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT 450 (658)
+....++|||-|+|||||++++++.....+.+...... +.|+++||+.++...+++.+++.. ......++..-++
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~S 563 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAFS 563 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeeee
Confidence 34578999999999999999999998876544323344 899999999998866666554431 2334456777788
Q ss_pred CCCCCCCCccccccc-------ccccccCCCCCCceeEeecCCCc
Q 006160 451 RETEPPLEEGELHKT-------MSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 451 ~~~~~~~~~~~~~~~-------~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
|+.. +.....+. ++.++. ..+....-|||.-.+
T Consensus 564 Req~---~~k~YVQd~l~e~~d~v~~~L--~~~~g~iYvCGd~~~ 603 (645)
T KOG1158|consen 564 REQT---PKKIYVQDRLREYADEVWELL--KKEGGHIYVCGDAKG 603 (645)
T ss_pred ccCC---CCceehhhHHHHHHHHHHHHH--hcCCcEEEEecCCcc
Confidence 8753 12222211 111111 123667778988865
No 89
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.09 E-value=0.0039 Score=63.02 Aligned_cols=82 Identities=15% Similarity=0.033 Sum_probs=55.6
Q ss_pred hhhhhhhHH---HHHHHHHHHhhhhH--HHHH-HhhhhccccchhHHHHHHHHHHHHHHchhhHhhh-cchHHHHHHHHH
Q 006160 11 ILRWCSLRF---TGYFMIAWDIQGRL--VQEL-LAWRNIGIANFPGVISLLAGLMMWATSFHPVRKH-FFQLFFYTHQLY 83 (658)
Q Consensus 11 ~HRW~a~~h---~~~y~i~w~~~~~~--~~~~-~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~-~YE~F~~~H~l~ 83 (658)
+|||+|.-- +++|...|...+.. .+++ .+.. .....+.|.+++++++.|.+||.+..||+ .| .|+.+|.+.
T Consensus 76 ~RR~LGl~af~~a~lH~~~y~~~~~~~~~~~~~~~i~-~~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~ 153 (205)
T PRK05419 76 TRRLLGLWAFFYATLHLLSYLLLDLGLDWSLLGKEIV-KRPYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLV 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 899999221 44555433332111 0111 1111 23446789999999999999999998776 67 899999998
Q ss_pred HHHhhhhhhhc
Q 006160 84 VVFVVFLALHV 94 (658)
Q Consensus 84 ilflv~l~~H~ 94 (658)
.+++++..+|.
T Consensus 154 Y~a~~L~~~H~ 164 (205)
T PRK05419 154 YLIAILAPLHY 164 (205)
T ss_pred HHHHHHHHHHH
Confidence 77777889994
No 90
>COG2717 Predicted membrane protein [Function unknown]
Probab=95.82 E-value=0.059 Score=54.37 Aligned_cols=74 Identities=20% Similarity=0.081 Sum_probs=56.0
Q ss_pred ccchhHHHHHHHHHHHHHHchhhHhhhcchHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHHH-HHHHHHHHHhhhc
Q 006160 45 IANFPGVISLLAGLMMWATSFHPVRKHFFQLFFYTHQLYVVFVVFLALHVGDF-----VFSMAAGG-IFLFILDRFLRFC 118 (658)
Q Consensus 45 ~~~~~Gvial~~l~im~~tSl~~iRr~~YE~F~~~H~l~ilflv~l~~H~~~~-----~~~~~~~~-i~l~~~Dr~~R~~ 118 (658)
.....|++|+++|..|.+||.+++||+.=..|..+|.+..+++++..+|.... ....++.. .+.+++.|+.+..
T Consensus 115 pyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 115 PYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999988855999999999999999999997421 11222222 2346677776654
No 91
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.00 E-value=0.061 Score=62.59 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHHH
Q 006160 47 NFPGVISLLAGLMM 60 (658)
Q Consensus 47 ~~~Gvial~~l~im 60 (658)
.+.|.+|-+|+.++
T Consensus 38 svl~~lasic~v~g 51 (830)
T KOG1923|consen 38 SVLGSLASICYVIG 51 (830)
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666555554
No 92
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=94.59 E-value=0.19 Score=56.15 Aligned_cols=41 Identities=20% Similarity=0.533 Sum_probs=33.3
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN 420 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~ 420 (658)
...++||+-|+||||+.+++++-+.+.+ ....|+++||+.+
T Consensus 432 ~~PlImVGPGTGvAPfRa~i~er~~q~~-------~~~~lFfGCR~K~ 472 (574)
T KOG1159|consen 432 NKPLIMVGPGTGVAPFRALIQERIYQGD-------KENVLFFGCRNKD 472 (574)
T ss_pred CCCeEEEcCCCCcccHHHHHHHHHhhcc-------CCceEEEecccCC
Confidence 5699999999999999999998776432 2347788999876
No 93
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.41 E-value=0.12 Score=65.44 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=2.5
Q ss_pred eEEEEE
Q 006160 616 DVGVIV 621 (658)
Q Consensus 616 ~VgV~~ 621 (658)
|+|+-+
T Consensus 1947 RLGLR~ 1952 (2039)
T PRK15319 1947 RLGLRV 1952 (2039)
T ss_pred EEEEEE
Confidence 444443
No 94
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.98 E-value=0.13 Score=65.17 Aligned_cols=7 Identities=14% Similarity=-0.049 Sum_probs=3.1
Q ss_pred EEEEECc
Q 006160 356 TASVEGP 362 (658)
Q Consensus 356 ~v~veGP 362 (658)
-+.++|=
T Consensus 1765 W~Ri~GG 1771 (2039)
T PRK15319 1765 WARFKAG 1771 (2039)
T ss_pred EEEEecc
Confidence 3445543
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.47 E-value=0.27 Score=52.51 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=5.9
Q ss_pred CCCCCCCCCCCCCC
Q 006160 280 PPPQGPHPPVPPPQ 293 (658)
Q Consensus 280 ~~~~~~~~~~~~~~ 293 (658)
|+|+||++|+|+|+
T Consensus 273 P~pp~~~qq~p~pp 286 (498)
T KOG4849|consen 273 PLPPQQIQQQPQPP 286 (498)
T ss_pred CCCchhhccCCCCC
Confidence 33444444444443
No 96
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=89.57 E-value=0.33 Score=49.27 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=24.9
Q ss_pred EEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
-|++|||+.|.++|++.+++. .+|.|.|+
T Consensus 192 ~v~~CGP~~m~~~~~~~~~~~-----------~~~~e~f~ 220 (220)
T cd06197 192 EVYLCGPPALEKAVLEWLEGK-----------KVHRESFA 220 (220)
T ss_pred cEEEECcHHHHHHHHHHhhhc-----------eeEecccC
Confidence 689999999999999988751 67888885
No 97
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=89.34 E-value=0.91 Score=50.86 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=11.6
Q ss_pred CCCCCCcceeEEeeeCC
Q 006160 160 RELSWLQWHPFSVSSSP 176 (658)
Q Consensus 160 p~is~~q~HPFTIaS~p 176 (658)
+.+++-+.|+|..+-.+
T Consensus 246 ~hVgwd~~~gf~~~~~p 262 (569)
T KOG3671|consen 246 PHVGWDEQVGFDSAPAP 262 (569)
T ss_pred cccCCCcCCCcccCCCC
Confidence 34556788999886543
No 98
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=89.07 E-value=0.76 Score=51.48 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=6.2
Q ss_pred hhhhccccchhHHHHH
Q 006160 39 AWRNIGIANFPGVISL 54 (658)
Q Consensus 39 ~w~~~~~~~~~Gvial 54 (658)
.|.++ ..+|+++|
T Consensus 56 ~W~~~---~~~Gal~l 68 (569)
T KOG3671|consen 56 HWNKT---GLCGALCL 68 (569)
T ss_pred hhccc---cCceeEEE
Confidence 55553 34455443
No 99
>PRK15313 autotransport protein MisL; Provisional
Probab=88.21 E-value=0.79 Score=55.27 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.4
Q ss_pred eEEEEEEEcC
Q 006160 182 HSSVLIKVLG 191 (658)
Q Consensus 182 ~lsl~IR~~G 191 (658)
.-.+.|+..|
T Consensus 498 ~T~v~V~N~G 507 (955)
T PRK15313 498 NTFVAVNNIG 507 (955)
T ss_pred eEEEEEEeCC
Confidence 3344444443
No 100
>PRK08051 fre FMN reductase; Validated
Probab=86.14 E-value=0.49 Score=48.21 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=24.6
Q ss_pred EEEEeCChhhHHHHHHHH-HhcccCCCCCCceEEEEecccC
Q 006160 618 GVIVCGPPSLQSSVAKEI-RSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~-~~~~~~~~~~~~~~~fhsesF~ 657 (658)
-|++|||+.|.++|.+.+ .+... ..+ ++|.|+|+
T Consensus 196 ~vyicGp~~m~~~v~~~l~~~~G~---~~~---~i~~e~f~ 230 (232)
T PRK08051 196 DIYIAGRFEMAKIARELFCRERGA---REE---HLFGDAFA 230 (232)
T ss_pred EEEEECCHHHHHHHHHHHHHHcCC---CHH---Heeccccc
Confidence 499999999999999998 66432 222 45666664
No 101
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=84.63 E-value=0.64 Score=46.89 Aligned_cols=35 Identities=26% Similarity=0.581 Sum_probs=25.9
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 656 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF 656 (658)
.--|++|||+.|.+++.+..++.... .+ +.|.|+|
T Consensus 190 ~~~v~vCGp~~m~~~~~~~l~~~G~~---~~---~i~~e~f 224 (224)
T cd06189 190 DFDVYACGSPEMVYAARDDFVEKGLP---EE---NFFSDAF 224 (224)
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCC---HH---HcccCCC
Confidence 34599999999999999999874432 22 4555666
No 102
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=83.00 E-value=1.9 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.489 Sum_probs=24.3
Q ss_pred EEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 656 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF 656 (658)
.|++|||+.|.+++++.+++... ... +.|.|.|
T Consensus 203 ~vyicGp~~m~~~~~~~l~~~G~---~~~---~i~~E~f 235 (236)
T cd06210 203 DIYLCGPPGMVDAAFAAAREAGV---PDE---QVYLEKF 235 (236)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCC---CHH---Heeeccc
Confidence 48999999999999999987432 111 4566666
No 103
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=82.95 E-value=4.4 Score=47.87 Aligned_cols=16 Identities=56% Similarity=1.038 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCCCCCc
Q 006160 291 PPQGPPPPLPPPKGNL 306 (658)
Q Consensus 291 ~~~~~~~~~~~~~~~~ 306 (658)
||+.||||..|..-|.
T Consensus 654 pp~~pppp~~p~~~~~ 669 (894)
T KOG0132|consen 654 PPQTPPPPMFPQGFNA 669 (894)
T ss_pred CCCCCCCCCCccCCCC
Confidence 3345555555544443
No 104
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=82.54 E-value=0.97 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEeCChhhHHHHHHHHHhcc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
-.|++|||+.|.+++++.++++.
T Consensus 198 ~~v~icGp~~m~~~~~~~l~~~g 220 (231)
T cd06215 198 RTVFVCGPAGFMKAVKSLLAELG 220 (231)
T ss_pred CeEEEECCHHHHHHHHHHHHHcC
Confidence 46999999999999999997744
No 105
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=81.54 E-value=2.3 Score=42.64 Aligned_cols=22 Identities=18% Similarity=0.664 Sum_probs=19.5
Q ss_pred EEEEEeCChhhHHHHHHHHHhc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
--|++|||+.|.+++++..++.
T Consensus 191 ~~v~vcGp~~~~~~v~~~l~~~ 212 (224)
T cd06187 191 HDIYICGPPAMVDATVDALLAR 212 (224)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 4599999999999999999774
No 106
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=80.92 E-value=0.79 Score=50.02 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=40.5
Q ss_pred HHHhhhhccccchhHHHHHHHHHHHHHHchhhHhh-hcc---hHHHHHHHHH-HHHhhhhhhhc
Q 006160 36 ELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRK-HFF---QLFFYTHQLY-VVFVVFLALHV 94 (658)
Q Consensus 36 ~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr-~~Y---E~F~~~H~l~-ilflv~l~~H~ 94 (658)
+...|.+ +.....|++|+.+|.++.+.+.+.-+- .+| +.=|..|... ++.++++++|.
T Consensus 32 ~~~s~~~-~~~qf~g~iaL~~msl~~~LA~R~~~iE~~~~GlD~~Y~~HK~~sIlailL~l~H~ 94 (438)
T COG4097 32 NLLSWRL-EFSQFLGFIALALMSLIFLLATRLPLIEAWFNGLDKIYRFHKYTSILAILLLLAHN 94 (438)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHhchHHHhhhhhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4567776 345889999999998887777654432 133 4556788765 67777888885
No 107
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=80.72 E-value=57 Score=34.49 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=34.1
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHH
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDIL 396 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll 396 (658)
++.|-||=|...+. ..++..+|++==+++-.+..+|+++-
T Consensus 127 ~l~i~GP~g~~~p~-~~~~~~lLigDetAlPAIa~iLE~lp 166 (265)
T COG2375 127 TLTIMGPRGSLVPP-EAADWYLLIGDETALPAIARILETLP 166 (265)
T ss_pred EEEEeCCCCCCCCC-CCcceEEEeccccchHHHHHHHHhCC
Confidence 58899999986555 57899999999999999999888773
No 108
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=80.66 E-value=1.3 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEeCChhhHHHHHHHHHhcc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
--|++|||+.|.++|.+.+.+..
T Consensus 202 ~~v~icGp~~m~~~v~~~l~~~G 224 (235)
T cd06217 202 RRVYVCGPPAFVEAATRLLLELG 224 (235)
T ss_pred CEEEEECCHHHHHHHHHHHHHcC
Confidence 46999999999999999998744
No 109
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=79.89 E-value=1.6 Score=43.81 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.7
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
.--|++|||+.|.+++++...+. |.... ++|.|.|+
T Consensus 187 ~~~vyicGp~~m~~~~~~~L~~~---Gv~~~---~i~~e~f~ 222 (222)
T cd06194 187 DDVVYLCGAPSMVNAVRRRAFLA---GAPMK---RIYADPFE 222 (222)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc---CCCHH---HeeecccC
Confidence 45699999999999999998773 43333 56667674
No 110
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=79.48 E-value=1.3 Score=38.88 Aligned_cols=19 Identities=42% Similarity=0.857 Sum_probs=16.6
Q ss_pred ceEEEEEeCChhhHHHHHH
Q 006160 615 VDVGVIVCGPPSLQSSVAK 633 (658)
Q Consensus 615 ~~VgV~~CGP~~m~~~V~~ 633 (658)
.+.-|++|||++|.++|++
T Consensus 91 ~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 91 DDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp TTEEEEEEEEHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHhcC
Confidence 4678999999999999874
No 111
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=79.25 E-value=8.8 Score=35.28 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=41.6
Q ss_pred EEEEEEEecCceEEEEEeCCCC--CC-cCCCcEEEEEeCCCCC---------------------CcceeEEeeeCCCCCC
Q 006160 125 DVLSASCLPCGTVELVLSKPAN--LR-YNALSFFFLQVRELSW---------------------LQWHPFSVSSSPLEGK 180 (658)
Q Consensus 125 ~v~sv~~l~~~v~~l~i~~p~~--~~-~~PGQ~v~L~vp~is~---------------------~q~HPFTIaS~p~~~~ 180 (658)
+|++++.++.++++|++..+.- +. ..+|||+.|.+|.... ...+.||+.+...+ .
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~-~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE-T 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC-C
Confidence 4678889999999999997652 22 4799999999985322 14689999888653 4
Q ss_pred CeEEEEEEEcCc
Q 006160 181 YHSSVLIKVLGE 192 (658)
Q Consensus 181 ~~lsl~IR~~G~ 192 (658)
++|+|-+-..|+
T Consensus 80 ~~l~iDfv~Hg~ 91 (117)
T PF08021_consen 80 GELDIDFVLHGD 91 (117)
T ss_dssp -EEEEEEE--SS
T ss_pred CEEEEEEEECCC
Confidence 788887766654
No 112
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=78.75 E-value=1.5 Score=47.28 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=24.8
Q ss_pred EEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
-|++|||+.|.+++++...+. |...+ ++|.|+|.
T Consensus 205 ~vyiCGP~~m~~~v~~~l~~~---Gv~~~---~i~~E~F~ 238 (332)
T PRK10684 205 TVMTCGPAPYMDWVEQEVKAL---GVTAD---RFFKEKFF 238 (332)
T ss_pred EEEEECCHHHHHHHHHHHHHc---CCCHH---HeEeeccC
Confidence 589999999999999988763 32222 45666673
No 113
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=78.66 E-value=1.3 Score=49.50 Aligned_cols=8 Identities=38% Similarity=0.505 Sum_probs=3.8
Q ss_pred hhhhhhcC
Q 006160 309 ENLIVVAG 316 (658)
Q Consensus 309 ~~~~~~~~ 316 (658)
++|+++.|
T Consensus 31 ~RF~~Y~G 38 (465)
T PF01690_consen 31 ERFIGYEG 38 (465)
T ss_pred cceEEEec
Confidence 34555544
No 114
>PRK09752 adhesin; Provisional
Probab=78.24 E-value=2.2 Score=52.72 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=4.4
Q ss_pred hheecCCC
Q 006160 510 NILYVNPF 517 (658)
Q Consensus 510 ~~~~i~p~ 517 (658)
+++++.|.
T Consensus 1123 ~gw~LEPQ 1130 (1250)
T PRK09752 1123 RGVVIEPQ 1130 (1250)
T ss_pred CCEEEeee
Confidence 45566555
No 115
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=77.60 E-value=1.5 Score=44.67 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEeCChhhHHHHHHHHHhcc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
--|++|||+.|.+++.+...+..
T Consensus 205 ~~vyvCGp~~m~~~~~~~L~~~G 227 (238)
T cd06211 205 HKAYLCGPPPMIDACIKTLMQGR 227 (238)
T ss_pred CEEEEECCHHHHHHHHHHHHHcC
Confidence 36999999999999999998744
No 116
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=76.60 E-value=2.8 Score=42.75 Aligned_cols=21 Identities=24% Similarity=0.608 Sum_probs=19.4
Q ss_pred EEEEEeCChhhHHHHHHHHHh
Q 006160 617 VGVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~ 637 (658)
--|++|||++|.+++++..++
T Consensus 211 ~~vyvcGp~~m~~~~~~~l~~ 231 (243)
T cd06216 211 RQVYACGPPGFLDAAEELLEA 231 (243)
T ss_pred CeEEEECCHHHHHHHHHHHHH
Confidence 489999999999999999877
No 117
>PHA03378 EBNA-3B; Provisional
Probab=76.17 E-value=8.6 Score=44.91 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=7.7
Q ss_pred hHHHHHHHHHhh
Q 006160 388 FLAILSDILHRI 399 (658)
Q Consensus 388 ~lsil~~ll~~~ 399 (658)
.-.||+.|+..+
T Consensus 821 ~k~ilrqlltgg 832 (991)
T PHA03378 821 TKQILRQLLTGG 832 (991)
T ss_pred HHHHHHHHhhcc
Confidence 455777777654
No 118
>PRK05713 hypothetical protein; Provisional
Probab=74.96 E-value=2.1 Score=45.85 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=25.6
Q ss_pred EEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
--|++|||+.|.+++.+.+++. |...+ ++|.|.|.
T Consensus 275 ~~vyiCGp~~mv~~~~~~L~~~---Gv~~~---~i~~e~F~ 309 (312)
T PRK05713 275 TMALLCGSPASVERFARRLYLA---GLPRN---QLLADVFL 309 (312)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc---CCCHH---Heeecccc
Confidence 4599999999999999998763 33222 45666673
No 119
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=71.50 E-value=16 Score=40.60 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=5.3
Q ss_pred hCCccCCCCCC
Q 006160 246 AGGISEANPHV 256 (658)
Q Consensus 246 ~gg~~~~~~~~ 256 (658)
.||...+-+..
T Consensus 287 g~g~a~~r~~~ 297 (518)
T KOG1830|consen 287 GGGLASARPSS 297 (518)
T ss_pred CCcccCcCCCc
Confidence 34555554544
No 120
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=70.90 E-value=3.9 Score=41.28 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=19.7
Q ss_pred eEEEEEeCChhhHHHHHHHHHhc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
+-.|++|||++|.+++.+..++.
T Consensus 196 ~~~vyiCGp~~m~~~v~~~l~~~ 218 (232)
T cd06190 196 EFEFYFAGPPPMVDAVQRMLMIE 218 (232)
T ss_pred ccEEEEECCHHHHHHHHHHHHHh
Confidence 45799999999999998888763
No 121
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=69.88 E-value=4 Score=49.98 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=9.2
Q ss_pred HHHHHHHhhhheecCCCC
Q 006160 501 GFIILVALLNILYVNPFN 518 (658)
Q Consensus 501 gfl~~~~i~~~~~i~p~~ 518 (658)
+.+++--+-...|+|-++
T Consensus 264 ~~~l~~~ird~ny~Ylf~ 281 (2365)
T COG5178 264 MPMLWESIRDVNYVYLFS 281 (2365)
T ss_pred ccccHHHhccccEEEEec
Confidence 344555555555555444
No 122
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=66.18 E-value=22 Score=41.04 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhhhhhhhc
Q 006160 75 LFFYTHQLYVVFVVFLALHV 94 (658)
Q Consensus 75 ~F~~~H~l~ilflv~l~~H~ 94 (658)
+.+.+|++|.+== ..+||
T Consensus 157 ~~lrlh~~ylind--~~~hc 174 (757)
T KOG4368|consen 157 FELRLHLIYLIND--VLHHC 174 (757)
T ss_pred hhhhhhhHHHHHH--HHHHH
Confidence 4567777764321 24565
No 123
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=65.16 E-value=10 Score=40.39 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCCHHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHh
Q 006160 597 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 597 gRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~ 637 (658)
||.+.+.|-..+.....+ ++-|++|||+.|.+.++....+
T Consensus 235 g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred CccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHH
Confidence 666666665555443333 7999999999999865554433
No 124
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=64.75 E-value=11 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=14.1
Q ss_pred cCCccccCCCCCCCCCCCCCCC
Q 006160 315 AGGISETEPQVGPPPPVPPPQG 336 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (658)
.++-+|...|..|+|+.+.+.+
T Consensus 1934 gd~~se~~sqpqp~p~~~~p~p 1955 (1958)
T KOG0391|consen 1934 GDPTSELQSQPQPQPQAPQPAP 1955 (1958)
T ss_pred CCCCccccCCCCCCCCCCCCCC
Confidence 4577787777666666655544
No 125
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=63.18 E-value=9.7 Score=43.02 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHhhhc
Q 006160 596 GSRPDFKEIFGSTSK 610 (658)
Q Consensus 596 ggRPd~~~i~~~~~~ 610 (658)
..|=|++++.+...+
T Consensus 543 SAkVDf~qL~DNL~q 557 (817)
T KOG1925|consen 543 SAKVDFEQLTDNLGQ 557 (817)
T ss_pred hhhccHHHHHHHHHH
Confidence 367788888887743
No 126
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=35 Score=37.32 Aligned_cols=6 Identities=33% Similarity=0.811 Sum_probs=3.5
Q ss_pred EECccC
Q 006160 359 VEGPYG 364 (658)
Q Consensus 359 veGPyG 364 (658)
.-||+|
T Consensus 482 ~Ag~~g 487 (488)
T KOG3895|consen 482 FAGFFG 487 (488)
T ss_pred ccCCCC
Confidence 456665
No 127
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=20 Score=38.87 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=7.2
Q ss_pred ccCCCCCCCCCCC
Q 006160 249 ISEANPHVGPPLP 261 (658)
Q Consensus 249 ~~~~~~~~~~~~~ 261 (658)
-++.+|.+..++|
T Consensus 135 f~~~pP~ys~~~~ 147 (365)
T KOG2391|consen 135 FSEDPPVYSRSLP 147 (365)
T ss_pred hcCCCccccCCCC
Confidence 3455666665554
No 128
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=60.06 E-value=6.6 Score=23.07 Aligned_cols=10 Identities=70% Similarity=1.358 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 006160 265 PQGAPPPGPP 274 (658)
Q Consensus 265 ~~~~~~~~~~ 274 (658)
||+.||++-|
T Consensus 4 pqG~pPQ~~P 13 (15)
T PF02162_consen 4 PQGYPPQGYP 13 (15)
T ss_pred CcCCCCCCCC
Confidence 3444444433
No 129
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=59.74 E-value=7.6 Score=39.62 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=47.5
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcch
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNEL 422 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl 422 (658)
+|.+.||+|..... ...+++||||||+||||++++++++... .++++++++|+.+|+
T Consensus 104 ~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~---------~~~~~~~~~~~~~d~ 160 (235)
T cd06193 104 TLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD---------ARGTALIEVPDAADE 160 (235)
T ss_pred EEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC---------CeEEEEEEECCHHHc
Confidence 68899999997653 3567899999999999999999977421 479999999998655
No 130
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=59.50 E-value=7 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.709 Sum_probs=19.2
Q ss_pred EEEEeCChhhHHHHHHHHHhcc
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~ 639 (658)
.|++|||+.|.+++++.+.+..
T Consensus 188 ~vyiCGp~~m~~~~~~~l~~~G 209 (218)
T cd06196 188 HFYVCGPPPMEEAINGALKELG 209 (218)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 5899999999999999987743
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=58.31 E-value=27 Score=43.66 Aligned_cols=6 Identities=0% Similarity=-0.341 Sum_probs=3.0
Q ss_pred cCCCcE
Q 006160 149 YNALSF 154 (658)
Q Consensus 149 ~~PGQ~ 154 (658)
-.|||-
T Consensus 1653 s~pa~~ 1658 (1958)
T KOG0391|consen 1653 SEPAQD 1658 (1958)
T ss_pred CCcccc
Confidence 445554
No 132
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=55.97 E-value=16 Score=38.02 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=21.2
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
.--|++|||+.|.+.+++......
T Consensus 192 ~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 192 VDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcC
Confidence 458999999999999999988766
No 133
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=55.81 E-value=80 Score=35.32 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.7
Q ss_pred hhhcch
Q 006160 69 RKHFFQ 74 (658)
Q Consensus 69 Rr~~YE 74 (658)
+|+.|+
T Consensus 97 mrKAFk 102 (518)
T KOG1830|consen 97 MRKAFK 102 (518)
T ss_pred HHhhhh
Confidence 344444
No 134
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=55.79 E-value=12 Score=42.24 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=8.3
Q ss_pred EEEECccCCCc
Q 006160 357 ASVEGPYGHEV 367 (658)
Q Consensus 357 v~veGPyG~~~ 367 (658)
+.++||.|-..
T Consensus 292 ~~~~~~~Gv~~ 302 (817)
T KOG1925|consen 292 VKLAGGHGVSA 302 (817)
T ss_pred ceecCCCCCcc
Confidence 56889999654
No 135
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=55.46 E-value=9.9 Score=37.67 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.0
Q ss_pred eEEEEEeCChhhHHHHHHHHHhc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
.-.|++|||+.|.+.+++.+.+.
T Consensus 191 ~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 191 GALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred CCEEEEECCHHHHHHHHHHHHHc
Confidence 45799999999999999988763
No 136
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=54.49 E-value=10 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEeCChhhHHHHHHHHHhcc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
--|++|||+.|.+++.+.+....
T Consensus 207 ~~vy~CGp~~Mv~~~~~~l~~~~ 229 (248)
T PRK10926 207 SHVMLCGNPQMVRDTQQLLKETR 229 (248)
T ss_pred CEEEEECCHHHHHHHHHHHHHhc
Confidence 45999999999999999987633
No 137
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=54.45 E-value=15 Score=25.11 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=15.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhH
Q 006160 9 WDILRWCSLRFTGYFMIAWDIQGRL 33 (658)
Q Consensus 9 ~~~HRW~a~~h~~~y~i~w~~~~~~ 33 (658)
+|+|||+. ....+.++.+.++|.+
T Consensus 2 ~~LH~w~~-~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFG-DIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 57899998 4444444456666543
No 138
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=53.67 E-value=20 Score=37.84 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred EEEEeCChhhHHHHHHHHHhcc
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~ 639 (658)
-|++|||+.|.++|++.+++..
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 183 RVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred EEEEECCHHHHHHHHHHHHhcC
Confidence 5999999999999999887643
No 139
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=52.67 E-value=13 Score=39.30 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEeCChhhHHHHHHHHHhcc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
--|++|||++|.+++++..++..
T Consensus 213 ~~vyiCGP~~m~~~v~~~L~~~G 235 (289)
T PRK08345 213 TYAAICGPPVMYKFVFKELINRG 235 (289)
T ss_pred cEEEEECCHHHHHHHHHHHHHcC
Confidence 46999999999999999887643
No 140
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=51.41 E-value=35 Score=30.51 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHch-----hhHhhhcchHHHHHHHHHH-HHhhhhhhhcc
Q 006160 49 PGVISLLAGLMMWATSF-----HPVRKHFFQLFFYTHQLYV-VFVVFLALHVG 95 (658)
Q Consensus 49 ~Gvial~~l~im~~tSl-----~~iRr~~YE~F~~~H~l~i-lflv~l~~H~~ 95 (658)
+|.++++.+.+..+.+. ..++...+|.+...|.... +++++...|..
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788877777776552 3356678999999999874 77778888963
No 141
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=50.43 E-value=29 Score=35.68 Aligned_cols=35 Identities=11% Similarity=0.339 Sum_probs=24.6
Q ss_pred CHHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHhc
Q 006160 600 DFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 600 d~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
...+++.+.. ... --|++|||+.|.+++++..++.
T Consensus 169 ~v~~~l~~~~---~~~-~~vyvCGp~~m~~~v~~~l~~~ 203 (250)
T PRK00054 169 FVTDVLDELD---SEY-DAIYSCGPEIMMKKVVEILKEK 203 (250)
T ss_pred chhHhHhhhc---cCC-CEEEEeCCHHHHHHHHHHHHHc
Confidence 3455555443 111 2599999999999999998773
No 142
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=28 Score=42.03 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=3.6
Q ss_pred hhheeecc
Q 006160 534 VGGVLIFG 541 (658)
Q Consensus 534 ~~~v~i~g 541 (658)
-+|++.|.
T Consensus 458 ~Vgivtfd 465 (1007)
T KOG1984|consen 458 RVGIVTFD 465 (1007)
T ss_pred EEEEEEec
Confidence 34444443
No 143
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=48.87 E-value=25 Score=35.19 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=21.1
Q ss_pred ceEEEEEeCChhhHH-HHHHHHHhcc
Q 006160 615 VDVGVIVCGPPSLQS-SVAKEIRSHS 639 (658)
Q Consensus 615 ~~VgV~~CGP~~m~~-~V~~~~~~~~ 639 (658)
++-.|++|||++|.+ ++++.+++..
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 346799999999999 9999997744
No 144
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=48.36 E-value=14 Score=39.05 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEEEeCChhhHHHHHHHHHh
Q 006160 617 VGVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~ 637 (658)
--|++|||++|.++|.+.+.+
T Consensus 240 ~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 240 THVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred cEEEEeCCchHHHHHHHHHHH
Confidence 459999999999999877766
No 145
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=48.14 E-value=14 Score=39.03 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCeeEEEEE-CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHH
Q 006160 351 PPTKITASVE-GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNF 428 (658)
Q Consensus 351 ~~~~~~v~ve-GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~ 428 (658)
+|.. +.+. +|+|.+... ...+.++|||||+||||+++++++.. ..++++|+|++|+.+ |+.+.++
T Consensus 135 ~Gd~--v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~---------~~~~v~L~~g~r~~~~d~~~~~e- 201 (289)
T cd06201 135 PGDT--IKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANA---------ARRPMHLYWGGRDPASDFLYEDE- 201 (289)
T ss_pred CcCE--EEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhh---------ccCCEEEEEEecCcccchHHHHH-
Confidence 3454 4454 577766433 45678999999999999999998752 125799999999985 6655443
Q ss_pred HHhccCCccCCCCceEEEEEEcCC
Q 006160 429 YKESICPFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 429 l~ell~~~~~~~~~l~I~iyVT~~ 452 (658)
++++. .+..++.++..++++
T Consensus 202 L~~l~----~~~~~~~~~~~~s~~ 221 (289)
T cd06201 202 LDQYL----ADGRLTQLHTAFSRT 221 (289)
T ss_pred HHHHH----HcCCCceEEEEECCC
Confidence 33332 223345566555543
No 146
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=47.89 E-value=14 Score=39.38 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=55.6
Q ss_pred eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC------CCcceeEEeeeCCCCC---CCeEEEEEE
Q 006160 123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS------WLQWHPFSVSSSPLEG---KYHSSVLIK 188 (658)
Q Consensus 123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is------~~q~HPFTIaS~p~~~---~~~lsl~IR 188 (658)
..+|++++.+. +++++|+++.+..+.|+||||+.|.++... ...+|+|||||+|.++ ..+++|+||
T Consensus 26 ~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr 105 (307)
T PLN03116 26 TATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVR 105 (307)
T ss_pred EEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEE
Confidence 57888998887 789999999888899999999999877421 1257999999998532 137999999
Q ss_pred EcC
Q 006160 189 VLG 191 (658)
Q Consensus 189 ~~G 191 (658)
...
T Consensus 106 ~~~ 108 (307)
T PLN03116 106 RAV 108 (307)
T ss_pred EEE
Confidence 764
No 147
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=47.25 E-value=20 Score=25.51 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=16.3
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhH
Q 006160 9 WDILRWCSLRFTGYFMIAWDIQGRL 33 (658)
Q Consensus 9 ~~~HRW~a~~h~~~y~i~w~~~~~~ 33 (658)
+++|||+| ......++...++|.+
T Consensus 6 ~~~H~~~g-~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 6 RKIHRWLG-LIAAIFLLLLALTGAL 29 (34)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 57899999 5555555566766654
No 148
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=45.70 E-value=71 Score=30.64 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHH-HHhhhhhhhcc
Q 006160 72 FFQLFFYTHQLYV-VFVVFLALHVG 95 (658)
Q Consensus 72 ~YE~F~~~H~l~i-lflv~l~~H~~ 95 (658)
..+.+...|.+.+ +++++++.|..
T Consensus 145 ~~~~~~~iH~~~~~ll~~~i~~Hi~ 169 (188)
T PF00033_consen 145 LAEWARLIHFILAYLLLAFIIIHIY 169 (188)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999875 77777888964
No 149
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=45.12 E-value=30 Score=35.58 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.9
Q ss_pred EEEEeCChhhHHHHHHHHHh
Q 006160 618 GVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~ 637 (658)
-|++|||+.|.+.+++..++
T Consensus 182 ~vyiCGP~~m~~~~~~~l~~ 201 (248)
T cd06219 182 LVIAIGPPIMMKAVSELTRP 201 (248)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 49999999999999998865
No 150
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=44.82 E-value=24 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=15.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhhhhH
Q 006160 9 WDILRWCSLRFTGYFMIAWDIQGRL 33 (658)
Q Consensus 9 ~~~HRW~a~~h~~~y~i~w~~~~~~ 33 (658)
..+|||+|...+++.+ .|...|.+
T Consensus 5 ~~~H~W~Gl~~g~~l~-~~~~tG~~ 28 (37)
T PF13706_consen 5 RKLHRWLGLILGLLLF-VIFLTGAV 28 (37)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 3589999954444444 56777665
No 151
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.82 E-value=64 Score=36.43 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.3
Q ss_pred CCCCCC
Q 006160 273 PPLQEE 278 (658)
Q Consensus 273 ~~~~~~ 278 (658)
|.+|++
T Consensus 412 p~pq~q 417 (483)
T KOG2236|consen 412 PSPQQQ 417 (483)
T ss_pred CCcccC
Confidence 333333
No 152
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=42.27 E-value=21 Score=36.50 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEEeCChhhHHHHHHHHHhc
Q 006160 617 VGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
--|++|||+.|.+++++..+++
T Consensus 179 ~~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 179 DRIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred CEEEEECCHHHHHHHHHHHHhh
Confidence 3699999999999999998775
No 153
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=41.46 E-value=23 Score=36.55 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.6
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
.-.|++|||++|.+++.+...+..
T Consensus 190 ~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 190 NTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcC
Confidence 347999999999999999987754
No 154
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.35 E-value=47 Score=36.11 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=4.5
Q ss_pred CCcceeEE
Q 006160 164 WLQWHPFS 171 (658)
Q Consensus 164 ~~q~HPFT 171 (658)
.+..|||-
T Consensus 76 lldtyP~~ 83 (365)
T KOG2391|consen 76 LLDTYPYY 83 (365)
T ss_pred ecccCCCC
Confidence 34567664
No 155
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=40.80 E-value=40 Score=32.44 Aligned_cols=25 Identities=24% Similarity=0.269 Sum_probs=19.6
Q ss_pred hcchHHHHHHHHHH-HHhhhhhhhcc
Q 006160 71 HFFQLFFYTHQLYV-VFVVFLALHVG 95 (658)
Q Consensus 71 ~~YE~F~~~H~l~i-lflv~l~~H~~ 95 (658)
-.++.....|.+.+ ++++++..|..
T Consensus 138 ~~~~~~~~vH~~~a~~~i~~i~~Hv~ 163 (182)
T PF01292_consen 138 GGAQIARSVHFFLAWLLIAFIILHVY 163 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999997764 77788899964
No 156
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=40.44 E-value=19 Score=37.62 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=17.4
Q ss_pred EEEEeCChh-hHHHHHHHHHhc
Q 006160 618 GVIVCGPPS-LQSSVAKEIRSH 638 (658)
Q Consensus 618 gV~~CGP~~-m~~~V~~~~~~~ 638 (658)
-|++|||+. |.++|.+.+.+.
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred EEEEECCcccchHHHHHHHHHH
Confidence 799999999 988887766654
No 157
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=40.22 E-value=22 Score=36.63 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=44.9
Q ss_pred ceEEEEEeCC-CCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEcC
Q 006160 135 GTVELVLSKP-ANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVLG 191 (658)
Q Consensus 135 ~v~~l~i~~p-~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~G 191 (658)
++++|+++.+ ..+.|+||||+.|.++. ....|||||+|+|.+ +.++|+||..+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~--~~l~l~Vk~~~ 70 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPAD--GALELLVRQVR 70 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCC--CEEEEEEEEec
Confidence 5889999877 56899999999999764 457799999999853 78999999875
No 158
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.17 E-value=43 Score=35.19 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=7.1
Q ss_pred chhhHhhhcchHH
Q 006160 64 SFHPVRKHFFQLF 76 (658)
Q Consensus 64 Sl~~iRr~~YE~F 76 (658)
.+....|-+||++
T Consensus 26 PL~pcpR~~Fql~ 38 (253)
T PF05308_consen 26 PLKPCPRPHFQLI 38 (253)
T ss_pred CCCCCCCceeecc
Confidence 3444555566655
No 159
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=39.99 E-value=71 Score=38.31 Aligned_cols=7 Identities=14% Similarity=-0.078 Sum_probs=3.3
Q ss_pred hHHHHHH
Q 006160 193 WTENLRD 199 (658)
Q Consensus 193 ~T~~L~~ 199 (658)
.++.|.+
T Consensus 610 aa~~Laq 616 (759)
T PF05518_consen 610 AAIALAQ 616 (759)
T ss_pred HHHHHHH
Confidence 3455544
No 160
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=39.77 E-value=39 Score=37.88 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.7
Q ss_pred CceEEEE
Q 006160 134 CGTVELV 140 (658)
Q Consensus 134 ~~v~~l~ 140 (658)
+++++|.
T Consensus 31 ~n~frVv 37 (409)
T KOG4590|consen 31 GNTFRVV 37 (409)
T ss_pred CCceeEE
Confidence 3344443
No 161
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=38.98 E-value=32 Score=35.83 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.3
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
+--|++|||+.|.+++++...+..
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLKKG 213 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC
Confidence 346999999999999999887754
No 162
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=37.98 E-value=29 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.4
Q ss_pred EEEEEeCChhhHHHHHHH
Q 006160 617 VGVIVCGPPSLQSSVAKE 634 (658)
Q Consensus 617 VgV~~CGP~~m~~~V~~~ 634 (658)
--|++|||+.|.+.|+..
T Consensus 264 ~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 264 KIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred cEEEEeCCHHHHHHhcCC
Confidence 358999999999999665
No 163
>MTH00191 CYTB cytochrome b; Provisional
Probab=36.31 E-value=94 Score=34.38 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=29.2
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|+.|||- +|+|-|-.+ ..+|+.-=..+| .+++. ..++.|++.+++.....++.
T Consensus 68 ~~v~~G~~~R~~H~~gas~~~~~~~~H~~r~~~~g-------sy~~~-~~W~~G~~l~~l~~~~~f~G 127 (365)
T MTH00191 68 RDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYG-------SYLNK-ETWNVGVILLILSMATAFLG 127 (365)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------eeccc-hhhHhhHHHHHHHHHHHHhh
Confidence 47889976 789988222 222322111111 22222 24778888777766665543
No 164
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=34.69 E-value=27 Score=38.51 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=21.7
Q ss_pred CceEEEEEeCCCCCCcCCCcEEEEEeC
Q 006160 134 CGTVELVLSKPANLRYNALSFFFLQVR 160 (658)
Q Consensus 134 ~~v~~l~i~~p~~~~~~PGQ~v~L~vp 160 (658)
.++..+++..+..+.|+||.++-|...
T Consensus 15 ~~~~~~~~~~~~~~~y~~GD~l~v~P~ 41 (384)
T cd06206 15 PSKRHLELRLPDGMTYRAGDYLAVLPR 41 (384)
T ss_pred ccEEEEEEECCCCCccCCCCEEEEECC
Confidence 357788887766789999999999764
No 165
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=33.98 E-value=1.2e+02 Score=30.60 Aligned_cols=14 Identities=21% Similarity=0.518 Sum_probs=11.3
Q ss_pred Ccccccch---hhhhhh
Q 006160 3 QDTMYGWD---ILRWCS 16 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a 16 (658)
.|+.|||- +|+|-|
T Consensus 63 ~ev~~G~liR~~H~~ga 79 (200)
T cd00284 63 RDVNFGWLIRSLHANGA 79 (200)
T ss_pred ccCcchHHHHHHHHHHH
Confidence 57789975 889998
No 166
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=33.79 E-value=2.2e+02 Score=29.58 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=5.2
Q ss_pred EEEECccCCC
Q 006160 357 ASVEGPYGHE 366 (658)
Q Consensus 357 v~veGPyG~~ 366 (658)
.++.|+||.-
T Consensus 246 ~~~qg~~~~~ 255 (341)
T KOG2893|consen 246 DYNQGGYDDR 255 (341)
T ss_pred hhhcCCcccc
Confidence 3455666543
No 167
>PHA03378 EBNA-3B; Provisional
Probab=33.72 E-value=85 Score=37.16 Aligned_cols=14 Identities=57% Similarity=1.303 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCCCC
Q 006160 326 GPPPPVPPPQGSPP 339 (658)
Q Consensus 326 ~~~~~~~~~~~~~~ 339 (658)
|.|-|.+++|+.+.
T Consensus 792 gaPtP~ppPQ~~P~ 805 (991)
T PHA03378 792 GAPTPQPPPQAGPT 805 (991)
T ss_pred CCCCCCCCCCCCCc
Confidence 45566666666543
No 168
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=33.45 E-value=2.4e+02 Score=34.05 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=6.1
Q ss_pred ccCCCCCCCCCC
Q 006160 320 ETEPQVGPPPPV 331 (658)
Q Consensus 320 ~~~~~~~~~~~~ 331 (658)
...+|.+|||-+
T Consensus 1027 ~s~~q~~pP~~g 1038 (1106)
T KOG0162|consen 1027 PSGPQRPPPPAG 1038 (1106)
T ss_pred CCCCCCCCCCCC
Confidence 344555555533
No 169
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=33.40 E-value=60 Score=34.09 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=6.2
Q ss_pred hhhhHHHHHHH
Q 006160 385 ISPFLAILSDI 395 (658)
Q Consensus 385 ITP~lsil~~l 395 (658)
+.=|+-+||||
T Consensus 237 ~PnMldVLKDm 247 (253)
T PF05308_consen 237 VPNMLDVLKDM 247 (253)
T ss_pred CccHHHHHHhh
Confidence 33366666665
No 170
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=32.98 E-value=63 Score=36.24 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=3.5
Q ss_pred eEEEEEEE
Q 006160 123 TVDVLSAS 130 (658)
Q Consensus 123 ~~~v~sv~ 130 (658)
.++|+...
T Consensus 33 ~frVvg~k 40 (409)
T KOG4590|consen 33 TFRVVGRK 40 (409)
T ss_pred ceeEEeee
Confidence 34444443
No 171
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=32.61 E-value=75 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.0
Q ss_pred HhhhcchHHHHHHHHH-HHHhhhhhhhcc
Q 006160 68 VRKHFFQLFFYTHQLY-VVFVVFLALHVG 95 (658)
Q Consensus 68 iRr~~YE~F~~~H~l~-ilflv~l~~H~~ 95 (658)
+.......+..+|... .+|+++..+|..
T Consensus 33 ~~~~~~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 33 FLGLNKHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567899999997 488888999975
No 172
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=32.54 E-value=3.4e+02 Score=27.66 Aligned_cols=34 Identities=6% Similarity=-0.005 Sum_probs=25.7
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEE
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFF 155 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v 155 (658)
+..+--.++...+|++++.+...-..+.+||-|.
T Consensus 142 RdyTyG~VeEv~~~~v~V~V~dDI~ANVkPg~Yw 175 (206)
T PF09874_consen 142 RDYTYGVVEEVKENLVRVFVHDDIAANVKPGYYW 175 (206)
T ss_pred ccceeEEEEEecCCEEEEEEccchhhcCCCCeEE
Confidence 3445555677888999999987666788999874
No 173
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=32.46 E-value=15 Score=38.76 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=22.4
Q ss_pred CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEE
Q 006160 146 NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLI 187 (658)
Q Consensus 146 ~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~I 187 (658)
...|+.|..+.-..-..+ ++-+=+|.+...+ .++..+..
T Consensus 66 ~~~WkvGd~C~A~~s~Dg--~~Y~A~I~~i~~~-~~~~~V~f 104 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDG--QYYPATIESIDEE-DGTCVVVF 104 (264)
T ss_dssp TT---TT-EEEEE-TTTS--SEEEEEEEEEETT-TTEEEEEE
T ss_pred ccCCCCCCEEEEEECCCC--CEEEEEEEEEcCC-CCEEEEEE
Confidence 358999999998765443 4688889888653 24555443
No 174
>MTH00156 CYTB cytochrome b; Provisional
Probab=32.16 E-value=1.5e+02 Score=32.63 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=28.4
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|+.|||- +|+|-|..+ ..+|+. .+.. . ..+++. ..++.|++.+++.....++.
T Consensus 61 ~~v~~Gw~iR~~H~~gas~~~~~~~lH~~----r~~~-~--gsy~~~-~~W~~G~~l~~~~~~~af~G 120 (356)
T MTH00156 61 RDVNYGWLLRTLHANGASFFFICIYLHIG----RGIY-Y--GSYKLK-HTWMSGVIILFLVMATAFLG 120 (356)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHH----HHHH-H--HHcCCc-chhHhhHHHHHHHHHHHHee
Confidence 47789975 788877222 122221 1111 1 122222 24788888777766665543
No 175
>MTH00016 CYTB cytochrome b; Validated
Probab=31.06 E-value=1.3e+02 Score=33.56 Aligned_cols=53 Identities=21% Similarity=0.106 Sum_probs=27.3
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWAT 63 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~t 63 (658)
.|+.|||- +|+|-|-.+ ..+|+.-=..+| .+++. ..+..|++.++++.+..++
T Consensus 72 ~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~g-------sy~~~-~~W~~Gv~l~~l~m~~af~ 130 (378)
T MTH00016 72 RDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYG-------SYFLM-ETWNIGVILLLLTMATAFL 130 (378)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccccc-hHHHhhHHHHHHHHHHHHh
Confidence 57889975 789888222 112221111111 11221 2467888877766665554
No 176
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=30.95 E-value=2.3e+02 Score=34.25 Aligned_cols=9 Identities=56% Similarity=0.966 Sum_probs=4.8
Q ss_pred EcCcchhhh
Q 006160 380 AGGIGISPF 388 (658)
Q Consensus 380 AGGiGITP~ 388 (658)
-||-||-|-
T Consensus 705 pg~~~~PPP 713 (894)
T KOG0132|consen 705 PGGHGIPPP 713 (894)
T ss_pred CCCCCCCCC
Confidence 345666554
No 177
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=30.91 E-value=40 Score=35.94 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=16.8
Q ss_pred eEEEEEeCChhhHH-HHHHHHHh
Q 006160 616 DVGVIVCGPPSLQS-SVAKEIRS 637 (658)
Q Consensus 616 ~VgV~~CGP~~m~~-~V~~~~~~ 637 (658)
+--|++|||+.|.+ ++.+...+
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 35799999999988 56655544
No 178
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=30.40 E-value=35 Score=38.25 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=6.3
Q ss_pred chHHHHHHHHh
Q 006160 192 EWTENLRDYIL 202 (658)
Q Consensus 192 ~~T~~L~~~~~ 202 (658)
+|++++.++..
T Consensus 187 eWvKa~l~l~~ 197 (480)
T KOG2675|consen 187 EWVKAYLALFL 197 (480)
T ss_pred HHHHHHHHHHH
Confidence 56666555543
No 179
>MTH00034 CYTB cytochrome b; Validated
Probab=30.34 E-value=1.3e+02 Score=33.54 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=28.8
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|+.|||- +|+|-|..+ ..+|+. .+.. . ..+++. ..++.|++.+++.....++.
T Consensus 71 ~~v~~Gw~iR~~H~~gas~~f~~~~lH~~----r~~~-~--gsy~~~-~~W~~G~~l~~l~~~~af~G 130 (379)
T MTH00034 71 RDVNYGWLLRNIHANGASLFFICLYFHIG----RGLY-Y--GSYVNI-ETWNIGVILFLLTMLTAFVG 130 (379)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-h--hccCCc-hHHHHhHHHHHHHHHHHHhh
Confidence 57889985 788888222 122221 1111 1 122222 24778888777766665543
No 180
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=29.93 E-value=54 Score=34.14 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.5
Q ss_pred eEEEEEeCChhhHHHHHHHHHhc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
+--|++|||+.|.+++++..++.
T Consensus 192 ~~~vylCGp~~mv~~~~~~L~~~ 214 (263)
T PRK08221 192 NMQVIVVGPPIMMKFTVLEFLKR 214 (263)
T ss_pred CeEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999888764
No 181
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=29.63 E-value=2.8e+02 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=11.8
Q ss_pred ceEEEEEeCCh------hhHHHHHHHHHhcc
Q 006160 615 VDVGVIVCGPP------SLQSSVAKEIRSHS 639 (658)
Q Consensus 615 ~~VgV~~CGP~------~m~~~V~~~~~~~~ 639 (658)
+|.-|+--|-. +-.+.+++.+|.|.
T Consensus 256 ~rwfvvwlgt~~~pvd~~~a~~la~si~~~~ 286 (297)
T PF07174_consen 256 QRWFVVWLGTANNPVDKGAAKALAESIRPWT 286 (297)
T ss_pred ceEEEEEecCCCCCCCHHHHHHHHhhccccC
Confidence 45555555532 23455555555443
No 182
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=29.17 E-value=42 Score=37.55 Aligned_cols=68 Identities=13% Similarity=-0.033 Sum_probs=53.0
Q ss_pred eEEEEEEEEec-----CceEEEEEeCCC-CCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCCC---CCeEEEEEEE
Q 006160 123 TVDVLSASCLP-----CGTVELVLSKPA-NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLEG---KYHSSVLIKV 189 (658)
Q Consensus 123 ~~~v~sv~~l~-----~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~~---~~~lsl~IR~ 189 (658)
..+|++.+.+. +++.+|+++.+. .+.|+||||+.|.+|... ...+|||||+|++.++ .+.++|+||+
T Consensus 144 ~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 144 TATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 56788888884 489999998765 589999999999987422 2467999999987432 1479999998
Q ss_pred c
Q 006160 190 L 190 (658)
Q Consensus 190 ~ 190 (658)
+
T Consensus 224 v 224 (411)
T TIGR03224 224 V 224 (411)
T ss_pred E
Confidence 6
No 183
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=29.17 E-value=67 Score=35.54 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=50.1
Q ss_pred EEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCC---C-CCcceeEEeeeCCCC---CCCeEEEEEEEc
Q 006160 124 VDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVREL---S-WLQWHPFSVSSSPLE---GKYHSSVLIKVL 190 (658)
Q Consensus 124 ~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i---s-~~q~HPFTIaS~p~~---~~~~lsl~IR~~ 190 (658)
.++++.+.+. +++.+|++..+..+.|.||||+.|.++.. + ....|+|||+|++.. +.++++|+||+.
T Consensus 93 ~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~ 171 (367)
T PLN03115 93 GRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 171 (367)
T ss_pred EEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEE
Confidence 3555544443 37899999877779999999999998743 1 235799999999842 236899999974
No 184
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=28.79 E-value=19 Score=38.98 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=27.2
Q ss_pred HHchhhHhhhcchHHHHHHHHHH--HHhhhhhhhcchhHHHHH--HHHHHHHHHHHHhhhccc
Q 006160 62 ATSFHPVRKHFFQLFFYTHQLYV--VFVVFLALHVGDFVFSMA--AGGIFLFILDRFLRFCQS 120 (658)
Q Consensus 62 ~tSl~~iRr~~YE~F~~~H~l~i--lflv~l~~H~~~~~~~~~--~~~i~l~~~Dr~~R~~r~ 120 (658)
+..+.-+|...-.-=++-|+-.+ .+-++.|+-+...-..|+ ....+-|..+|++.-++.
T Consensus 114 i~~i~~~ke~nR~s~~fNHLsavsEgi~aLgWV~v~p~P~~~V~e~~dsA~Fy~NRVLke~K~ 176 (312)
T PF01213_consen 114 IQKIQEFKEKNRGSKFFNHLSAVSEGIPALGWVAVEPKPAPYVKEMKDSAQFYTNRVLKEYKE 176 (312)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG--S-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHhhheeeeeeeCCchHhHHHHHHHHHHHHHhHHHHHhhh
Confidence 34444555543222233465443 455555555431112232 223345677888877664
No 185
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.94 E-value=2.4e+02 Score=33.41 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 251 EANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
--+-|+.+--|+-++--.+-+.++|+..
T Consensus 444 ~~~~H~s~~~pr~r~r~~~yqm~~P~~~ 471 (861)
T KOG3161|consen 444 PYADHYSTFSPRDRMRSSPYQMPPPQPY 471 (861)
T ss_pred CcccccCccCcccchhcCCCCCCCCCcC
Confidence 3455655555554444444444444433
No 186
>PRK05802 hypothetical protein; Provisional
Probab=26.93 E-value=50 Score=35.70 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=50.6
Q ss_pred EEEEECccCCCc-c--C--ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHH
Q 006160 356 TASVEGPYGHEV-P--Y--HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSN 427 (658)
Q Consensus 356 ~v~veGPyG~~~-~--~--~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~ 427 (658)
++.|+||||+.. . . ....+++++||||+||||+++++++++++. .+|+++|++|+.+++.+.++
T Consensus 150 ~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--------~~v~li~g~r~~~~~~~~~e 218 (320)
T PRK05802 150 EILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--------NKIIVIIDKGPFKNNFIKEY 218 (320)
T ss_pred EEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--------CcEEEEEeCCCHHHHHHHHH
Confidence 588999998652 1 1 123568999999999999999999997643 36999999999999855443
No 187
>MTH00131 CYTB cytochrome b; Provisional
Probab=26.77 E-value=1.9e+02 Score=32.22 Aligned_cols=54 Identities=20% Similarity=0.117 Sum_probs=28.2
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|..|||- +|+|-|..+ ..+|+.-=..+| .+++. ..++.|++.+++.....++.
T Consensus 71 ~ev~~G~~iR~~H~~gas~~~~~~~lH~~r~~~~g-------sy~~~-~~W~~G~~l~~l~~~~~f~G 130 (380)
T MTH00131 71 RDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYG-------SYLYK-ETWNIGVVLLLLVMMTAFVG 130 (380)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCc-hHHHHhHHHHHHHHHHHHHh
Confidence 57889975 889988322 222222111111 11221 24678888777666655543
No 188
>MTH00100 CYTB cytochrome b; Provisional
Probab=26.68 E-value=1.6e+02 Score=32.83 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=27.5
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWAT 63 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~t 63 (658)
.|+.|||- +|+|-|..+ ..+|+.- +.. . ..+++.. .++.|++.+++.....++
T Consensus 71 ~~v~~G~~iR~~H~~gas~~~~~~~~H~~r----~~~-~--gsy~~~~-~W~~G~~l~~l~~~~af~ 129 (379)
T MTH00100 71 RDVNYGWIIRYLHANGASMFFICLFLHVGR----GLY-Y--GSYLFLE-TWNIGIILLFTVMATAFM 129 (379)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHH----HHH-h--ccccCch-HHHHHHHHHHHHHHHHHH
Confidence 57789975 789988222 1222211 111 0 1222222 477888877766666554
No 189
>MTH00074 CYTB cytochrome b; Provisional
Probab=25.47 E-value=2.1e+02 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=26.9
Q ss_pred Ccccccch---hhhhhhhHH---HHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 006160 3 QDTMYGWD---ILRWCSLRF---TGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWAT 63 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h---~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~t 63 (658)
.|..|||- +|+|-|-.+ ..+|+.- +.. . ...++. ..++.|++.+++.....++
T Consensus 72 ~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r----~~~-~--gsy~~~-~~W~~G~~l~~l~~~~af~ 130 (380)
T MTH00074 72 RDVNYGWLMRNIHANGASFFFICIYLHIGR----GLY-Y--GSYMYK-ETWNIGVILLFLVMATAFV 130 (380)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHH----HHH-H--HHhcCc-hHHHhhHHHHHHHHHHHHH
Confidence 57889975 789887222 1122211 111 1 111111 2467888877666665554
No 190
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.38 E-value=1.1e+02 Score=34.09 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=8.9
Q ss_pred CCCcCCCcEEEEE
Q 006160 146 NLRYNALSFFFLQ 158 (658)
Q Consensus 146 ~~~~~PGQ~v~L~ 158 (658)
.+.|++|.-|.+-
T Consensus 231 ELsFkaGdIItVL 243 (462)
T KOG2199|consen 231 ELSFKAGDIITVL 243 (462)
T ss_pred ccceecCcEEEEc
Confidence 4678888866654
No 191
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=24.26 E-value=2.1e+02 Score=31.70 Aligned_cols=10 Identities=0% Similarity=-0.469 Sum_probs=5.6
Q ss_pred CCcCCCcEEE
Q 006160 147 LRYNALSFFF 156 (658)
Q Consensus 147 ~~~~PGQ~v~ 156 (658)
|.-++|.||.
T Consensus 92 ~lK~~Gd~v~ 101 (457)
T KOG0559|consen 92 WLKKVGDRVN 101 (457)
T ss_pred HhhCcccccc
Confidence 3446777654
No 192
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=24.24 E-value=48 Score=36.59 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=21.3
Q ss_pred CceEEEEEeCC-CCCCcCCCcEEEEEeC
Q 006160 134 CGTVELVLSKP-ANLRYNALSFFFLQVR 160 (658)
Q Consensus 134 ~~v~~l~i~~p-~~~~~~PGQ~v~L~vp 160 (658)
.++.+|++..+ ..+.|+||.|+.|.-.
T Consensus 15 ~~~~hl~l~~~~~~~~y~~GD~l~v~p~ 42 (382)
T cd06207 15 RSTRHIEFDLGGSGLSYETGDNLGIYPE 42 (382)
T ss_pred ceEEEEEEecCCCCCccCCCCEEEEEcC
Confidence 34888888864 5689999999999754
No 193
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.15 E-value=1.3e+02 Score=33.57 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhccc
Q 006160 107 FLFILDRFLRFCQS 120 (658)
Q Consensus 107 ~l~~~Dr~~R~~r~ 120 (658)
..|=+|-+-|+++-
T Consensus 228 S~FEFDvFTRLFqP 241 (563)
T KOG1785|consen 228 SNFEFDVFTRLFQP 241 (563)
T ss_pred eeehhhhHHHhhcc
Confidence 34556666666653
No 194
>PLN02631 ferric-chelate reductase
Probab=24.11 E-value=1.9e+02 Score=34.85 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=39.8
Q ss_pred ccchhHHHHHHHHHHHHHHch-----hhHhhhcchHHHHHHHHHH-HHhhhhhhhcc
Q 006160 45 IANFPGVISLLAGLMMWATSF-----HPVRKHFFQLFFYTHQLYV-VFVVFLALHVG 95 (658)
Q Consensus 45 ~~~~~Gvial~~l~im~~tSl-----~~iRr~~YE~F~~~H~l~i-lflv~l~~H~~ 95 (658)
....+|++++.++.++++.+. .++=...||.|...|+... +++++..+|..
T Consensus 152 ig~RtGila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i 208 (699)
T PLN02631 152 FGLRIGYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHTV 208 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998887653 2334457999999999875 77777888853
No 195
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=23.66 E-value=93 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.5
Q ss_pred ceEEEEEcCcc--hhhhHHHHHHHHH
Q 006160 374 ENLILVAGGIG--ISPFLAILSDILH 397 (658)
Q Consensus 374 ~~vvlVAGGiG--ITP~lsil~~ll~ 397 (658)
+++++.|||+| |.|.++++++|.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46999999999 8999999999964
No 196
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=23.66 E-value=1.2e+02 Score=27.60 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHchhhHhhhc
Q 006160 12 LRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATSFHPVRKHF 72 (658)
Q Consensus 12 HRW~a~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tSl~~iRr~~ 72 (658)
|.|.+ -..++|++.-+. ..|...+ ....|.+.+++.++++++++-++|.+.
T Consensus 56 ~~W~s-fv~L~YF~~gv~--------~a~~~~~-~~~~a~~e~~ls~~lF~~~~~y~R~r~ 106 (109)
T PF09842_consen 56 YAWAS-FVILLYFIHGVT--------RAWSDPG-ERWLAWLELLLSVLLFVGAMLYARWRG 106 (109)
T ss_pred HHHHH-HHHHHHHHHHHH--------HHhcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777 444444432211 2233323 468888888888889999998888653
No 197
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=23.57 E-value=3.3e+02 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcc
Q 006160 212 GPPPPVPPPEGHPPPVHPPQGPVR 235 (658)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~ 235 (658)
+|+-+-+-.+.-+-.-.+-.||++
T Consensus 38 rpprqrdsstsgddsgrdsggprr 61 (300)
T PF05750_consen 38 RPPRQRDSSTSGDDSGRDSGGPRR 61 (300)
T ss_pred CCCCcccccCCCccccCcCCCccc
Confidence 344444444333333344456663
No 198
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=23.50 E-value=1e+02 Score=35.64 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=10.7
Q ss_pred EEEEECccCCCccCc
Q 006160 356 TASVEGPYGHEVPYH 370 (658)
Q Consensus 356 ~v~veGPyG~~~~~~ 370 (658)
...|||=|=...++.
T Consensus 291 a~AIeGVfP~~tpd~ 305 (582)
T PF03276_consen 291 APAIEGVFPTTTPDL 305 (582)
T ss_pred chhhcccccCCCccH
Confidence 356899888776664
No 199
>MTH00145 CYTB cytochrome b; Provisional
Probab=22.79 E-value=2e+02 Score=32.11 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=11.3
Q ss_pred Ccccccch---hhhhhh
Q 006160 3 QDTMYGWD---ILRWCS 16 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a 16 (658)
.|..|||- +|+|-|
T Consensus 72 ~~v~~Gw~iR~~H~~ga 88 (379)
T MTH00145 72 RDVNYGWLLRSLHANGA 88 (379)
T ss_pred ccCcchHHHHHHHHHHH
Confidence 57889975 889988
No 200
>MTH00086 CYTB cytochrome b; Provisional
Probab=22.71 E-value=2.3e+02 Score=31.35 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=27.3
Q ss_pred Ccccccch---hhhhhhhHHHHHHHHHHHhh--hhHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 006160 3 QDTMYGWD---ILRWCSLRFTGYFMIAWDIQ--GRLVQELLAWRNIGIANFPGVISLLAGLMMWAT 63 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h~~~y~i~w~~~--~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~t 63 (658)
.|..|||- +|+|-|- +++...+..- +.. . -..++ ...++.|++.++++.+..++
T Consensus 60 ~~v~~GwliR~~H~~gas---~~f~~~ylHi~R~~~-y--gsy~~-~~~W~~Gv~l~~l~m~~af~ 118 (355)
T MTH00086 60 YEVNFGWLFRIFHFNGAS---LFFIFLYLHIFKGLF-M--MSYRL-KKVWISGLTIYLLVMMEAFM 118 (355)
T ss_pred CcccccHHHHHHHHhHHH---HHHHHHHHHHHHHHH-H--cccCC-chHHHHhHHHHHHHHHHHHh
Confidence 57889985 7899882 2222111111 111 1 11111 22477888877666555544
No 201
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=22.52 E-value=60 Score=36.23 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=20.6
Q ss_pred ceEEEEEeCC--CCCCcCCCcEEEEEeC
Q 006160 135 GTVELVLSKP--ANLRYNALSFFFLQVR 160 (658)
Q Consensus 135 ~v~~l~i~~p--~~~~~~PGQ~v~L~vp 160 (658)
+++.|++... ..+.|+||.++.|..+
T Consensus 16 ~~~~i~ld~~~~~~~~Y~~GD~l~V~p~ 43 (406)
T cd06202 16 STILVKLDTNGAQELHYQPGDHVGIFPA 43 (406)
T ss_pred eEEEEEEECCCCCCCCCCCCCEEEEEeC
Confidence 4778888765 3689999999999765
No 202
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.21 E-value=1.3e+02 Score=25.85 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhheecCCCCCcchhhHHHHHHHHHhhheeeccceeee
Q 006160 496 ISSTVGFIILVALLNILYVNPFNIHSWWYKGLLFLACMVGGVLIFGGTVIG 546 (658)
Q Consensus 496 ~as~~gfl~~~~i~~~~~i~p~~~~~~~~~~~l~~~~~~~~v~i~g~~~~~ 546 (658)
+.+..|+.++==.+..+...|. ..+|++.++-+++.++|+..+||.++.
T Consensus 15 ~~a~yGiklMRD~~F~~~~~p~--~~lwlqfl~G~~lf~~G~~Fi~GfI~~ 63 (77)
T PF11118_consen 15 ILAAYGIKLMRDTVFGILFSPF--PSLWLQFLAGLLLFAIGVGFIAGFILH 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 3444455554444444444554 478999999999999999888887663
No 203
>PLN02252 nitrate reductase [NADPH]
Probab=22.12 E-value=1e+02 Score=38.16 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=17.2
Q ss_pred eEEEEEeCChhhHHH-HHHHHHh
Q 006160 616 DVGVIVCGPPSLQSS-VAKEIRS 637 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~-V~~~~~~ 637 (658)
.--|++|||+.|.+. +...+.+
T Consensus 855 ~~~vyiCGPp~Mi~~av~~~L~~ 877 (888)
T PLN02252 855 ETLALMCGPPPMIEFACQPNLEK 877 (888)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHH
Confidence 456999999999985 6666655
No 204
>MTH00022 CYTB cytochrome b; Validated
Probab=22.06 E-value=2.4e+02 Score=31.49 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=28.6
Q ss_pred Ccccccch---hhhhhhhHHHHHHHHHHH--hhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRFTGYFMIAWD--IQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h~~~y~i~w~--~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|..|||- +|+|-| ++++...+. ..+.. . ..+++. ..++.|++.+++.....++.
T Consensus 70 ~~v~~Gw~iR~~H~~ga---s~~f~~~~lHi~r~~~-~--gsy~~~-~~W~~Gv~l~~l~~~~af~G 129 (379)
T MTH00022 70 RDVNYGFLLRYLHANGA---SLFFLCLYIHIGRGLY-Y--GGYLKF-HVWNVGVVIFLLTMATAFMG 129 (379)
T ss_pred ccCccHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-H--HHccCc-chhhhcHHHHHHHHHHHHhe
Confidence 57889975 789966 222211111 11111 1 122322 25788888777766665543
No 205
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=21.66 E-value=60 Score=36.33 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=25.4
Q ss_pred EEEEEEEEec----CceEEEEEeCCC-CCCcCCCcEEEEEeC
Q 006160 124 VDVLSASCLP----CGTVELVLSKPA-NLRYNALSFFFLQVR 160 (658)
Q Consensus 124 ~~v~sv~~l~----~~v~~l~i~~p~-~~~~~PGQ~v~L~vp 160 (658)
..+.+.+.+. .+++.|++..+. .+.|+||.++.|.-.
T Consensus 8 ~~v~~~~~lt~~~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~ 49 (416)
T cd06204 8 APVAVSRELFTGSDRSCLHIEFDISGSGIRYQTGDHLAVWPT 49 (416)
T ss_pred eEEEEEeeccCCCCccEEEEEEeCCCCCCcccCCCEEEEEcC
Confidence 3444444443 357888888654 689999999999754
No 206
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=21.58 E-value=57 Score=35.75 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=21.0
Q ss_pred CceEEEEEeCCC-CCCcCCCcEEEEEeC
Q 006160 134 CGTVELVLSKPA-NLRYNALSFFFLQVR 160 (658)
Q Consensus 134 ~~v~~l~i~~p~-~~~~~PGQ~v~L~vp 160 (658)
.++.+|++..+. .+.|+||.++.|..+
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~i~p~ 42 (360)
T cd06199 15 KETRHIELDLEGSGLSYEPGDALGVYPT 42 (360)
T ss_pred ccEEEEEEeCCCCCCcccCCCEEEEEcC
Confidence 347888888654 688999999999765
No 207
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=21.33 E-value=96 Score=31.35 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=18.4
Q ss_pred CCcceeEEeeeCCCCCCCeEEEEEEEc
Q 006160 164 WLQWHPFSVSSSPLEGKYHSSVLIKVL 190 (658)
Q Consensus 164 ~~q~HPFTIaS~p~~~~~~lsl~IR~~ 190 (658)
.++-|.|||||++....+.++|++..+
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCCcceeecccccCCCCEEEEEEEEE
Confidence 567799999999987778999998876
No 208
>MTH00053 CYTB cytochrome b; Provisional
Probab=20.71 E-value=2.8e+02 Score=30.93 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=28.5
Q ss_pred Ccccccch---hhhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|+.|||- +|+|-|- +++...+..-++-.. ...+++ ...++.|++.+++.....++.
T Consensus 72 ~~v~~Gw~iR~~H~~gas---~~f~~~ylHi~R~~~-~gsy~~-~~~W~~Gv~l~~l~m~~af~G 131 (381)
T MTH00053 72 RDVNYGFILRYLHANGAS---MFFLCVYFHIGRGIY-YGSYTK-IIVWNVGVLIFLLMILTAFIG 131 (381)
T ss_pred ccCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HcccCC-chHHHhhHHHHHHHHHHHHHH
Confidence 57889975 7888882 222211111111100 011222 234778888777666655543
No 209
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.44 E-value=2.5e+02 Score=32.99 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCC
Q 006160 253 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332 (658)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (658)
++-...+.|+..++.+.++++.+.+.+-++|-|+++|.|++.++-+-|.+ ++...++|+.+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 450 (585)
T PRK14950 390 KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD-------------------EKPKYTPPAPP 450 (585)
T ss_pred cccccccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC-------------------cCCCCCCCCCC
Q ss_pred CCCCCCC
Q 006160 333 PPQGSPP 339 (658)
Q Consensus 333 ~~~~~~~ 339 (658)
+......
T Consensus 451 ~~~~~~~ 457 (585)
T PRK14950 451 KEEEKAL 457 (585)
T ss_pred cccccCC
No 210
>MTH00033 CYTB cytochrome b; Provisional
Probab=20.30 E-value=1.8e+02 Score=32.49 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=27.6
Q ss_pred Ccccccch---hhhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhccccchhHHHHHHHHHHHHHHc
Q 006160 3 QDTMYGWD---ILRWCSLRFTGYFMIAWDIQGRLVQELLAWRNIGIANFPGVISLLAGLMMWATS 64 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a~~h~~~y~i~w~~~~~~~~~~~~w~~~~~~~~~Gvial~~l~im~~tS 64 (658)
.|..|||- +|+|-|-. ++...+..-.+... ....+ ....++.|++.++++....++.
T Consensus 68 ~~v~~Gw~iR~~H~~gAs~---~f~~~ylHi~R~~~-~gsY~-r~~~W~~Gv~ll~l~m~~aF~G 127 (383)
T MTH00033 68 RDVNYGWILRYVHANGASL---FFICVYCHIGRGLY-YGGYS-RVLTWIVGVLIFFIMMLTAFIG 127 (383)
T ss_pred ccCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-ccccc-ChHHHHHhHHHHHHHHHHHHhh
Confidence 57889975 78988822 22111111111100 00111 1224678888777766665544
No 211
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=20.10 E-value=2.8e+02 Score=33.66 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=39.8
Q ss_pred cccchhHHHHHHHHHHHHHHchhh---Hhh--hcchHHHHHHHHHH-HHhhhhhhhcc
Q 006160 44 GIANFPGVISLLAGLMMWATSFHP---VRK--HFFQLFFYTHQLYV-VFVVFLALHVG 95 (658)
Q Consensus 44 ~~~~~~Gvial~~l~im~~tSl~~---iRr--~~YE~F~~~H~l~i-lflv~l~~H~~ 95 (658)
......|.++.+++.++++.+.+- .+. ..||.|...|.... +++++...|..
T Consensus 154 ~va~R~G~la~~~Lpll~llv~Rnn~l~~ltGis~e~~i~fHrWlGr~~~llallH~i 211 (722)
T PLN02844 154 RVATRFGLLAEACLALLLLPVLRGLALFRLLGIQFEASVRYHVWLGTSMIFFATVHGA 211 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999998876643 122 36999999999875 77777788864
Done!