Query 006160
Match_columns 658
No_of_seqs 359 out of 2547
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eh1_A Flavohemoprotein; struc 99.9 2.8E-24 9.5E-29 217.1 21.7 166 122-453 4-181 (243)
2 1qfj_A Protein (flavin reducta 99.9 1.2E-23 4E-28 211.3 21.8 166 123-453 4-171 (232)
3 4fk8_A Ferredoxin--NADP reduct 99.9 3.2E-24 1.1E-28 220.7 17.2 149 121-428 19-171 (271)
4 1tvc_A Methane monooxygenase c 99.9 1.7E-23 5.8E-28 212.9 20.1 167 122-452 11-185 (250)
5 3jqq_A Ferredoxin NADP reducta 99.9 2.9E-23 9.8E-28 219.5 16.0 175 123-454 17-251 (316)
6 2r6h_A NADH:ubiquinone oxidore 99.9 2.6E-22 8.9E-27 208.0 22.8 169 122-453 10-226 (290)
7 4g1v_A Flavohemoglobin; three 99.9 1.3E-21 4.4E-26 212.7 28.1 169 120-451 148-339 (399)
8 1fdr_A Flavodoxin reductase; f 99.9 4E-22 1.4E-26 202.0 21.6 168 122-453 5-176 (248)
9 3a1f_A Cytochrome B-245 heavy 99.9 9.7E-23 3.3E-27 196.6 12.4 182 358-656 2-186 (186)
10 3lo8_A Ferredoxin--NADP reduct 99.9 8.7E-22 3E-26 206.8 20.2 213 122-490 29-276 (311)
11 2pia_A Phthalate dioxygenase r 99.9 4.6E-21 1.6E-25 202.7 24.5 145 122-428 9-159 (321)
12 3vo2_A Putative uncharacterize 99.9 2.5E-21 8.6E-26 203.6 22.2 210 123-488 35-273 (310)
13 2qdx_A Ferredoxin reductase; o 99.9 2.2E-21 7.4E-26 198.1 20.9 172 122-452 4-182 (257)
14 2bgi_A Ferredoxin-NADP(H) redu 99.9 5.6E-21 1.9E-25 197.1 23.3 171 123-452 18-196 (272)
15 1gvh_A Flavohemoprotein; oxido 99.9 2E-21 6.9E-26 210.7 20.8 170 121-453 152-328 (396)
16 2eix_A NADH-cytochrome B5 redu 99.9 1.3E-21 4.5E-26 197.6 18.1 205 122-488 12-222 (243)
17 1cqx_A Flavohemoprotein; globi 99.9 1E-20 3.5E-25 205.6 24.0 169 121-453 154-334 (403)
18 1krh_A Benzoate 1,2-dioxygenas 99.9 3.5E-21 1.2E-25 204.5 19.2 199 122-488 109-312 (338)
19 2b5o_A FNR, ferredoxin--NADP r 99.9 3.8E-20 1.3E-24 201.9 23.4 175 122-453 123-325 (402)
20 2cnd_A NADH-dependent nitrate 99.8 2.8E-20 9.5E-25 190.9 19.4 207 122-488 13-247 (270)
21 1umk_A B5R, NADH-cytochrome B5 99.8 2.6E-20 8.8E-25 191.8 18.1 206 122-488 17-253 (275)
22 1fnb_A Ferredoxin-NADP+ reduct 99.8 1.2E-19 4.2E-24 190.8 22.5 210 123-489 39-278 (314)
23 2bmw_A Ferredoxin--NADP reduct 99.8 2E-19 7E-24 188.0 21.5 176 123-454 23-228 (304)
24 1ep3_B Dihydroorotate dehydrog 99.8 1.8E-19 6E-24 184.9 17.7 146 123-428 7-157 (262)
25 2rc5_A Ferredoxin-NADP reducta 99.8 5.3E-19 1.8E-23 185.8 18.4 173 123-454 23-238 (314)
26 2gpj_A Siderophore-interacting 99.6 7.4E-15 2.5E-19 150.0 19.4 74 122-198 9-89 (252)
27 1ddg_A Sulfite reductase (NADP 99.5 2E-14 6.7E-19 155.4 8.4 88 356-454 209-298 (374)
28 4dql_A Bifunctional P-450/NADP 99.5 1.9E-13 6.5E-18 148.6 12.4 125 353-488 220-349 (393)
29 1f20_A Nitric-oxide synthase; 99.4 4.2E-12 1.5E-16 139.8 15.0 92 356-453 261-354 (435)
30 1tll_A Nitric-oxide synthase, 99.3 2.6E-11 8.9E-16 140.6 15.8 92 356-453 482-575 (688)
31 2qtl_A MSR;, methionine syntha 99.3 4.1E-11 1.4E-15 135.2 15.4 94 356-454 360-455 (539)
32 3qfs_A CPR, P450R, NADPH--cyto 99.2 4.1E-11 1.4E-15 132.6 9.9 123 356-488 289-415 (458)
33 2bpo_A CPR, P450R, NADPH-cytoc 99.1 2.1E-11 7.3E-16 141.2 6.4 77 373-453 524-604 (682)
34 3qe2_A CPR, P450R, NADPH--cyto 99.1 7.9E-11 2.7E-15 135.0 8.8 92 356-454 449-541 (618)
35 3lyu_A Putative hydrogenase; t 99.1 6.5E-11 2.2E-15 110.7 3.9 62 357-428 3-64 (142)
36 3lrx_A Putative hydrogenase; a 98.8 5.3E-09 1.8E-13 99.4 6.9 63 357-429 8-70 (158)
37 3lyu_A Putative hydrogenase; t 80.9 0.97 3.3E-05 41.3 3.3 24 618-641 110-133 (142)
38 1krh_A Benzoate 1,2-dioxygenas 78.9 1.1 3.7E-05 46.6 3.3 36 616-657 301-336 (338)
39 3lrx_A Putative hydrogenase; a 78.0 1.5 5.2E-05 40.6 3.7 22 618-639 115-136 (158)
40 3vo2_A Putative uncharacterize 73.4 2.1 7.2E-05 43.9 3.7 25 615-639 261-285 (310)
41 3lo8_A Ferredoxin--NADP reduct 70.8 1.5 5.3E-05 44.8 1.9 43 597-639 241-286 (311)
42 2eix_A NADH-cytochrome B5 redu 69.6 3.2 0.00011 40.6 3.8 41 597-639 194-234 (243)
43 2bmw_A Ferredoxin--NADP reduct 66.5 3.7 0.00013 41.7 3.7 41 597-637 233-277 (304)
44 1fnb_A Ferredoxin-NADP+ reduct 62.3 5.8 0.0002 40.6 4.2 23 616-638 266-288 (314)
45 1nxk_A MAP kinase-activated pr 59.5 2.2 7.5E-05 45.3 0.5 14 595-608 310-323 (400)
46 1nxk_A MAP kinase-activated pr 55.3 2.8 9.7E-05 44.4 0.5 11 357-367 69-79 (400)
47 1umk_A B5R, NADH-cytochrome B5 52.9 5.6 0.00019 39.6 2.2 24 616-639 242-266 (275)
48 1ep3_B Dihydroorotate dehydrog 47.4 13 0.00044 36.9 3.8 32 601-637 180-211 (262)
49 1wa7_B TIP, hypothetical 28.7 43.4 16 0.00055 23.5 2.3 18 292-309 3-20 (26)
50 3s2u_A UDP-N-acetylglucosamine 41.3 19 0.00066 37.4 4.2 26 374-399 3-30 (365)
51 2rc5_A Ferredoxin-NADP reducta 35.8 19 0.00064 36.6 3.0 21 619-639 269-290 (314)
52 2cnd_A NADH-dependent nitrate 29.0 26 0.00088 34.5 2.6 39 597-637 219-258 (270)
53 1ddg_A Sulfite reductase (NADP 27.8 25 0.00086 37.1 2.3 37 124-160 14-56 (374)
54 3cx5_C Cytochrome B-C1 complex 23.0 1.5E+02 0.005 31.6 7.1 14 3-16 70-86 (385)
55 1pp9_C Cytochrome B; cytochrom 21.9 1.7E+02 0.0059 31.0 7.4 14 3-16 71-87 (379)
56 2qjy_A Cytochrome B; cytochrom 21.3 1.8E+02 0.0061 31.6 7.5 14 3-16 85-101 (445)
No 1
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.92 E-value=2.8e-24 Score=217.10 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=132.2
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCC--CcceeEEeeeCCCCCCCeEEEEEEEc------
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSW--LQWHPFSVSSSPLEGKYHSSVLIKVL------ 190 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~--~q~HPFTIaS~p~~~~~~lsl~IR~~------ 190 (658)
+.++|++++.++++++++++..+. ...|+||||++|.++..+. +++|||||+|.+.+ +.++|+||..
T Consensus 4 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~~~i~vk~~~~~~~~ 81 (243)
T 4eh1_A 4 RTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG--REYRISVKREGVGSDN 81 (243)
T ss_dssp EEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS--SCEEEEEECTTTTSSS
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCC--CeEEEEEEEeecCCCC
Confidence 467899999999999999998764 3689999999999985433 37899999999864 7899999999
Q ss_pred -CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCC
Q 006160 191 -GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAP 269 (658)
Q Consensus 191 -G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 269 (658)
|.+|+.|++.+..
T Consensus 82 ~G~~S~~l~~~l~~------------------------------------------------------------------ 95 (243)
T 4eh1_A 82 PGLVSHYLHNNVKV------------------------------------------------------------------ 95 (243)
T ss_dssp CCHHHHHHHHHCCT------------------------------------------------------------------
T ss_pred CCeehhHHHhcCCC------------------------------------------------------------------
Confidence 8999998765311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 270 PPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPL 349 (658)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (658)
T Consensus 96 -------------------------------------------------------------------------------- 95 (243)
T 4eh1_A 96 -------------------------------------------------------------------------------- 95 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160 350 LPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY 429 (658)
Q Consensus 350 ~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l 429 (658)
++ ++.|+||||..... ..+++++|||||+||||++++++++..+.. .+ ++|+|++|+.+++.+.+++.
T Consensus 96 --G~--~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~------~~-v~l~~~~r~~~~~~~~~el~ 163 (243)
T 4eh1_A 96 --GD--SVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK------SG-VTYLYACNSAKEHTFAQETA 163 (243)
T ss_dssp --TC--EEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC------CS-EEEEEEESSGGGCTTHHHHH
T ss_pred --CC--EEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC------Ce-EEEEEEeCChhhhhHHHHHH
Confidence 02 47899999997655 678999999999999999999999987541 23 99999999999987766553
Q ss_pred HhccCCccCCCCceEEEEEEcCCC
Q 006160 430 KESICPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 430 ~ell~~~~~~~~~l~I~iyVT~~~ 453 (658)
++. .+. +++++++++++.
T Consensus 164 -~l~----~~~-~~~~~~~~s~~~ 181 (243)
T 4eh1_A 164 -QLI----AQQ-GWMQQVWYRDES 181 (243)
T ss_dssp -HHH----HHH-TCEEEEEESSCC
T ss_pred -HHH----HhC-CeEEEEEEccCC
Confidence 322 122 678888887653
No 2
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.92 E-value=1.2e-23 Score=211.26 Aligned_cols=166 Identities=22% Similarity=0.274 Sum_probs=128.8
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRDY 200 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~~ 200 (658)
.++|.+++.++++++++++..+..+.|+||||++|+++. .++|||||+|.+.+ ++.++|+||.. |++|+++.+.
T Consensus 4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~~-~~~l~l~i~~~~~G~~s~~~~~~ 79 (232)
T 1qfj_A 4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPDE-KGFIELHIGASEINLYAKAVMDR 79 (232)
T ss_dssp EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTTS-TTCEEEEEC------CCHHHHHH
T ss_pred EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCCC-CCcEEEEEEEccCCchhHHHHHh
Confidence 568889999999999999987777899999999999985 58899999999864 47899999997 4577776665
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 201 ILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGP 280 (658)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (658)
++..
T Consensus 80 l~~G---------------------------------------------------------------------------- 83 (232)
T 1qfj_A 80 ILKD---------------------------------------------------------------------------- 83 (232)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEE
Q 006160 281 PPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVE 360 (658)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ve 360 (658)
+ ++.|+
T Consensus 84 ------------------------------------------------------------------------d--~v~v~ 89 (232)
T 1qfj_A 84 ------------------------------------------------------------------------H--QIVVD 89 (232)
T ss_dssp ------------------------------------------------------------------------S--EEEEE
T ss_pred ------------------------------------------------------------------------C--EEEEe
Confidence 1 47799
Q ss_pred CccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCC
Q 006160 361 GPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDK 440 (658)
Q Consensus 361 GPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~ 440 (658)
||||........+++++|||||+||||+++++++++.+. ..++++|+|++|+.+++.+.+++ +++. .+.
T Consensus 90 gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~----~~~ 158 (232)
T 1qfj_A 90 IPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQHLYDLCEL-EALS----LKH 158 (232)
T ss_dssp EEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGGGCTTHHHH-HHHH----HHC
T ss_pred CCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHHhhhHHHH-HHHH----HHC
Confidence 999997654345789999999999999999999998754 13679999999999999665554 3321 123
Q ss_pred CceEEEEEEcCCC
Q 006160 441 LNLETFIYVTRET 453 (658)
Q Consensus 441 ~~l~I~iyVT~~~ 453 (658)
.+++++.++++++
T Consensus 159 ~~~~~~~~~s~~~ 171 (232)
T 1qfj_A 159 PGLQVVPVVEQPE 171 (232)
T ss_dssp TTEEEEEEESSCC
T ss_pred CCeEEEEEEcCCC
Confidence 4688888787653
No 3
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.91 E-value=3.2e-24 Score=220.69 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=123.6
Q ss_pred cceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHH
Q 006160 121 RRTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLR 198 (658)
Q Consensus 121 ~~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~ 198 (658)
...+++++++.+++++++++++.+..+.|+||||++|+++..+..++|||||+|.+.+ +.++|+||.. |.+|+.|.
T Consensus 19 ~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~--~~~~~~v~~~~~G~~s~~l~ 96 (271)
T 4fk8_A 19 FDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE--EHLEFFSIKVQNGPLTSRLQ 96 (271)
T ss_dssp EEEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SSEEEEEECCTTCTTHHHHT
T ss_pred ceeEEEEEEEEcCCCEEEEEEEcCCCCCcCCCCEEEEEccCCCceeeeeEeccCCCCC--CcEEEEEEEECCCchhhHHh
Confidence 3467899999999999999999888889999999999999767778999999999864 6899999998 99998872
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 199 DYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEE 278 (658)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (658)
+ + .
T Consensus 97 ~-l---~------------------------------------------------------------------------- 99 (271)
T 4fk8_A 97 H-L---K------------------------------------------------------------------------- 99 (271)
T ss_dssp T-C---C-------------------------------------------------------------------------
T ss_pred c-C---C-------------------------------------------------------------------------
Confidence 1 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEE
Q 006160 279 GPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITAS 358 (658)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 358 (658)
+++ ++.
T Consensus 100 ------------------------------------------------------------------------~Gd--~v~ 105 (271)
T 4fk8_A 100 ------------------------------------------------------------------------VGD--PVL 105 (271)
T ss_dssp ------------------------------------------------------------------------TTC--EEE
T ss_pred ------------------------------------------------------------------------CCC--EEE
Confidence 012 478
Q ss_pred EE-CccCCCccCc-cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 359 VE-GPYGHEVPYH-LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 359 ve-GPyG~~~~~~-~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
|+ ||||...... ..+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.+++
T Consensus 106 v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el 171 (271)
T 4fk8_A 106 IGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER------FDKVVLTHTCRLKGELAYMDYI 171 (271)
T ss_dssp EESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH------CSEEEEEECCCSHHHHHHHHHH
T ss_pred EecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC------CCCEEEEEecCCHHHHhHHHHH
Confidence 99 9999876542 368999999999999999999999887542 3589999999999998766554
No 4
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.91 E-value=1.7e-23 Score=212.85 Aligned_cols=167 Identities=22% Similarity=0.305 Sum_probs=131.1
Q ss_pred ceEEEEEEEEecCceEEEEEeC-C-C----CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160 122 RTVDVLSASCLPCGTVELVLSK-P-A----NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 193 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~-p-~----~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~ 193 (658)
..++|++++.++++++++++.. + . .+.|+||||++|+++. ..++|||||+|.+.+ ++.++|+||.. |.+
T Consensus 11 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~-~~~l~i~vk~~~~G~~ 87 (250)
T 1tvc_A 11 FEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--TDVSRSYSPANLPNP-EGRLEFLIRVLPEGRF 87 (250)
T ss_dssp EEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--CSSSEEECCBCCSSS-SCCEEEEECCCTTSSS
T ss_pred EEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCC--CccccccccCCCCCC-CCeEEEEEEECCCCCc
Confidence 3567788888999999999987 6 4 5789999999999975 368999999999864 47899999999 999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273 (658)
Q Consensus 194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (658)
|+.|++.+..
T Consensus 88 s~~l~~~l~~---------------------------------------------------------------------- 97 (250)
T 1tvc_A 88 SDYLRNDARV---------------------------------------------------------------------- 97 (250)
T ss_dssp HHHHHHHSSS----------------------------------------------------------------------
T ss_pred hHHHHhcCCC----------------------------------------------------------------------
Confidence 9998754311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 353 (658)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (658)
++
T Consensus 98 ------------------------------------------------------------------------------Gd 99 (250)
T 1tvc_A 98 ------------------------------------------------------------------------------GQ 99 (250)
T ss_dssp ------------------------------------------------------------------------------SS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 02
Q ss_pred eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160 354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 433 (658)
Q Consensus 354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell 433 (658)
++.|+||||........+++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+.+++ +++.
T Consensus 100 --~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~ 170 (250)
T 1tvc_A 100 --VLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYFGVNTEPELFYIDEL-KSLE 170 (250)
T ss_dssp --EEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEEECSSSTTCCCHHHH-HHHH
T ss_pred --EEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC------CCceEEEEEEeCCHHHhhhHHHH-HHHH
Confidence 47799999997654345689999999999999999999998754 13579999999999998555444 3331
Q ss_pred CCccCCCCceEEEEEEcCC
Q 006160 434 CPFFSDKLNLETFIYVTRE 452 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~ 452 (658)
....+++++.++|++
T Consensus 171 ----~~~~~~~~~~~~s~~ 185 (250)
T 1tvc_A 171 ----RSMRNLTVKACVWHP 185 (250)
T ss_dssp ----HHSSSCEEEECCSSC
T ss_pred ----HhCCCeEEEEEeccC
Confidence 123457777777764
No 5
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.90 E-value=2.9e-23 Score=219.46 Aligned_cols=175 Identities=16% Similarity=0.121 Sum_probs=131.5
Q ss_pred eEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC----------------------------------
Q 006160 123 TVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS---------------------------------- 163 (658)
Q Consensus 123 ~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is---------------------------------- 163 (658)
.++|++++.+. +++++|++..+..+.|.+|||+.|.+|...
T Consensus 17 ~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g 96 (316)
T 3jqq_A 17 KCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKK 96 (316)
T ss_dssp EEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC-----------------------------------
T ss_pred EEEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCC
Confidence 56788888875 789999999988899999999999998653
Q ss_pred CCcceeEEeeeCCCCCCCeEEEEEEEc--------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 164 WLQWHPFSVSSSPLEGKYHSSVLIKVL--------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHP 229 (658)
Q Consensus 164 ~~q~HPFTIaS~p~~~~~~lsl~IR~~--------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (658)
..++|||||+|+|.+ +.++|+||+. |.+|+.|.+ +.
T Consensus 97 ~~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~-l~--------------------------- 146 (316)
T 3jqq_A 97 QRCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKN-LK--------------------------- 146 (316)
T ss_dssp CCCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHT-CC---------------------------
T ss_pred cccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhh-CC---------------------------
Confidence 478999999999974 6899999975 888988721 10
Q ss_pred CCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 006160 230 PQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYE 309 (658)
Q Consensus 230 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (658)
T Consensus 147 -------------------------------------------------------------------------------- 146 (316)
T 3jqq_A 147 -------------------------------------------------------------------------------- 146 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCcc---ccceEEEEEcCcchh
Q 006160 310 NLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHL---MYENLILVAGGIGIS 386 (658)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~---~~~~vvlVAGGiGIT 386 (658)
+++ +|.|+||||.+..... ..+++||||||+|||
T Consensus 147 -----------------------------------------~Gd--~v~v~gP~G~f~l~~~~~~~~~~vvlIAgGtGIa 183 (316)
T 3jqq_A 147 -----------------------------------------IND--DIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183 (316)
T ss_dssp -----------------------------------------TTC--EEEEEEEECCCCCCTTHHHHTCCEEEEEEGGGGH
T ss_pred -----------------------------------------CCC--EEEEEecCCceEcCCcccCCCCcEEEEeCCceec
Confidence 012 4778999998644322 378999999999999
Q ss_pred hhHHHHHHHHHhhcc----CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC
Q 006160 387 PFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 387 P~lsil~~ll~~~~~----~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~ 454 (658)
|+++++++++.+... ......++++|+|++|+.+++.+.++ ++++.. ....+++++.++|++++
T Consensus 184 P~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~e-L~~l~~---~~~~~~~~~~~~s~~~~ 251 (316)
T 3jqq_A 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNE-LEYFQK---MYPNNINIHYVFSYKQN 251 (316)
T ss_dssp HHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHH-HHHHHH---HCTTTEEEEEEEGGGCC
T ss_pred hHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHH-HHHHHH---hCCCcEEEEEEECCCcc
Confidence 999999999865421 00112468999999999999855444 444321 11136899999998743
No 6
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.90 E-value=2.6e-22 Score=208.05 Aligned_cols=169 Identities=17% Similarity=0.290 Sum_probs=130.5
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC--CCCcCCCcEEEEEeCCC-----------------------------CCCcceeE
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA--NLRYNALSFFFLQVREL-----------------------------SWLQWHPF 170 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~--~~~~~PGQ~v~L~vp~i-----------------------------s~~q~HPF 170 (658)
..++|++++.++++++++++..+. .+.|+||||++|.+|.. ...++|||
T Consensus 10 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~y 89 (290)
T 2r6h_A 10 WECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAY 89 (290)
T ss_dssp EEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEE
T ss_pred EEEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceee
Confidence 357889999999999999999875 57899999999999852 35689999
Q ss_pred EeeeCCCCCCCeEEEEEEE-----------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 171 SVSSSPLEGKYHSSVLIKV-----------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGP 233 (658)
Q Consensus 171 TIaS~p~~~~~~lsl~IR~-----------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (658)
||+|.+.+ .+.++|+||. .|.+|+.|.+ +.
T Consensus 90 Si~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~-l~------------------------------- 136 (290)
T 2r6h_A 90 SMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFS-LK------------------------------- 136 (290)
T ss_dssp ECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTT-CC-------------------------------
T ss_pred eccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhc-CC-------------------------------
Confidence 99999864 4799999996 3667777643 10
Q ss_pred cccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhh
Q 006160 234 VRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIV 313 (658)
Q Consensus 234 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (658)
T Consensus 137 -------------------------------------------------------------------------------- 136 (290)
T 2r6h_A 137 -------------------------------------------------------------------------------- 136 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHH
Q 006160 314 VAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILS 393 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~ 393 (658)
+++ ++.|+||||.+... ..++++||||||+||||++++++
T Consensus 137 -------------------------------------~Gd--~v~v~gP~G~f~~~-~~~~~~vliagGtGitP~~s~l~ 176 (290)
T 2r6h_A 137 -------------------------------------PGD--KVMMSGPYGDFHIQ-DTDAEMLYIGGGAGMAPLRAQIL 176 (290)
T ss_dssp -------------------------------------TTC--EEEEEEEECCCCCC-SSSCEEEEEEEGGGHHHHHHHHH
T ss_pred -------------------------------------CCC--EEEEEecccCCcCC-CCCCeEEEEECccCHHHHHHHHH
Confidence 012 47799999997654 46789999999999999999999
Q ss_pred HHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCC
Q 006160 394 DILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 394 ~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~ 453 (658)
+++++.. ..++++|+|++|+.+++.+.+++ +++. ....+++++.+++++.
T Consensus 177 ~~~~~~~-----~~~~v~l~~~~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~~ 226 (290)
T 2r6h_A 177 HLFRTLK-----TGRKVSYWYGARSKNEIFYEEDF-REIE----REFPNFKFHIALSDPQ 226 (290)
T ss_dssp HHHHTSC-----CCSCEEEEEEESSGGGCCSHHHH-HHHH----HHCTTEEEEEEESSCC
T ss_pred HHHHhcC-----CCCcEEEEEEcCCHHHHHHHHHH-HHHH----HhCCCeEEEEEEccCC
Confidence 9887542 23689999999999998555544 3321 1234688888888753
No 7
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.89 E-value=1.3e-21 Score=212.66 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=129.5
Q ss_pred ccceEEEEEEEEecCceEEEEEeCCC--CC-----CcCCCcEEEEEeC----CCCCCcceeEEeeeCCCCCCCeEEEEEE
Q 006160 120 SRRTVDVLSASCLPCGTVELVLSKPA--NL-----RYNALSFFFLQVR----ELSWLQWHPFSVSSSPLEGKYHSSVLIK 188 (658)
Q Consensus 120 ~~~~~~v~sv~~l~~~v~~l~i~~p~--~~-----~~~PGQ~v~L~vp----~is~~q~HPFTIaS~p~~~~~~lsl~IR 188 (658)
.++.++|++.+.++++++++++..+. .+ .|+||||+.|+++ +....++|||||+|.|.+ +.++|+||
T Consensus 148 ~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~--~~~~i~Vk 225 (399)
T 4g1v_A 148 GWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTK--NGLRFAVK 225 (399)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT--TCEEEEEE
T ss_pred cceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC--CeEEEEEE
Confidence 34578999999999999999998664 23 8999999999974 334578999999999864 78999999
Q ss_pred E--------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCC
Q 006160 189 V--------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPL 260 (658)
Q Consensus 189 ~--------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~ 260 (658)
. .|.+|+.|++.+..
T Consensus 226 ~~~~~~~~~~G~~S~~L~~~l~~--------------------------------------------------------- 248 (399)
T 4g1v_A 226 MEAARENFPAGLVSEYLHKDAKV--------------------------------------------------------- 248 (399)
T ss_dssp CCCCBTTBCCCHHHHHHHHTCCT---------------------------------------------------------
T ss_pred eccCCCCCCCCEehhHHHhCCCC---------------------------------------------------------
Confidence 9 57788888654311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCC
Q 006160 261 PVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQ 340 (658)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (658)
T Consensus 249 -------------------------------------------------------------------------------- 248 (399)
T 4g1v_A 249 -------------------------------------------------------------------------------- 248 (399)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCeeEEEEECccCCCccCcc----ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEee
Q 006160 341 RPPPSRHPLLPPTKITASVEGPYGHEVPYHL----MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAV 416 (658)
Q Consensus 341 ~~~~~~~~~~~~~~~~v~veGPyG~~~~~~~----~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~v 416 (658)
|+ ++.|.||||.+..+.. .++++||||||+||||+++++++++++.. .++|+|+|++
T Consensus 249 -----------Gd--~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~------~~~v~l~~~~ 309 (399)
T 4g1v_A 249 -----------GD--EIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP------NRPIYWIQSS 309 (399)
T ss_dssp -----------TC--EEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT------TSCEEEEEEE
T ss_pred -----------CC--EEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCC------CCCEEEEEec
Confidence 12 4779999999654433 57899999999999999999999987642 3689999999
Q ss_pred ccCcchhhHHHHHHhccCCccCCCCceEEEEEEcC
Q 006160 417 KKSNELSLLSNFYKESICPFFSDKLNLETFIYVTR 451 (658)
Q Consensus 417 R~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~ 451 (658)
|+.+++.+.+++ +++. .+..++++++++++
T Consensus 310 r~~~~~~~~~el-~~l~----~~~~~~~~~~~~s~ 339 (399)
T 4g1v_A 310 YDEKTQAFKKHV-DELL----AECANVDKIIVHTD 339 (399)
T ss_dssp SSSTTSTTHHHH-HHHH----TTCSSEEEEEEETT
T ss_pred CCHHHhhhHHHH-HHHH----HhCCCcEEEEEEeC
Confidence 999998666554 3332 23345666666553
No 8
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.89 E-value=4e-22 Score=202.03 Aligned_cols=168 Identities=22% Similarity=0.186 Sum_probs=127.7
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 199 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~ 199 (658)
..++|++++.++++++++++. +..+.|+||||++|+++..+..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 5 ~~~~V~~~~~~~~~~~~l~l~-~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~~~~G~~s~~l~~ 81 (248)
T 1fdr_A 5 VTGKVTKVQNWTDALFSLTVH-APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVTVPDGKLSPRLAA 81 (248)
T ss_dssp EEEEEEEEEECSSSEEEEEEE-CCCCCCCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEECCTTCSSHHHHHT
T ss_pred EEEEEEEEEEcCCCEEEEEEe-CCCCCcCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEEeCCCchhhHHHh
Confidence 357889999999999999996 55689999999999999766788999999999864 7899999998 999998852
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 279 (658)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (658)
+ .
T Consensus 82 -l---~-------------------------------------------------------------------------- 83 (248)
T 1fdr_A 82 -L---K-------------------------------------------------------------------------- 83 (248)
T ss_dssp -C---C--------------------------------------------------------------------------
T ss_pred -C---C--------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160 280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 359 (658)
+++ ++.|
T Consensus 84 -----------------------------------------------------------------------~Gd--~v~v 90 (248)
T 1fdr_A 84 -----------------------------------------------------------------------PGD--EVQV 90 (248)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CcC--EEEE
Confidence 012 4678
Q ss_pred E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160 360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 437 (658)
Q Consensus 360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~ 437 (658)
+ ||||.+..... ++++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+.+++ +++..
T Consensus 91 ~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el-~~l~~--- 160 (248)
T 1fdr_A 91 VSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARYAADLSYLPLM-QELEK--- 160 (248)
T ss_dssp ESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESSGGGCTTHHHH-HHHHH---
T ss_pred ecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC------CCCcEEEEEEcCCHHHhhHHHHH-HHHHH---
Confidence 8 99998543222 3789999999999999999999875432 24689999999999998655544 33211
Q ss_pred CCCCceEEEEEEcCCC
Q 006160 438 SDKLNLETFIYVTRET 453 (658)
Q Consensus 438 ~~~~~l~I~iyVT~~~ 453 (658)
....+++++.++|+++
T Consensus 161 ~~~~~~~~~~~~s~~~ 176 (248)
T 1fdr_A 161 RYEGKLRIQTVVSRET 176 (248)
T ss_dssp HTTTSEEEEEEESSSC
T ss_pred hCcCcEEEEEEEecCC
Confidence 1124688888888764
No 9
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.88 E-value=9.7e-23 Score=196.59 Aligned_cols=182 Identities=23% Similarity=0.443 Sum_probs=123.1
Q ss_pred EEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccC-CCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160 358 SVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEG-KSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 436 (658)
Q Consensus 358 ~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~-~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~ 436 (658)
.|+||||.+..+..+++++||||||+||||+++++++++++.+.+ .....++|+|+|++|+.+++.|+.+.+.++....
T Consensus 2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~ 81 (186)
T 3a1f_A 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM 81 (186)
T ss_dssp CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHH
T ss_pred eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHH
Confidence 479999997654457899999999999999999999998764221 0113578999999999999998887776543110
Q ss_pred c--CCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCchHHHHHHHHHHHHHHHHHHhhhheec
Q 006160 437 F--SDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNNVWSGLYVISSTVGFIILVALLNILYV 514 (658)
Q Consensus 437 ~--~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~~w~~~~i~as~~gfl~~~~i~~~~~i 514 (658)
. ....++++++|+|++.+.. .. .. ++
T Consensus 82 ~~~~~~~~~~~~~~~t~~~~~~--~~---~~-----------------------------------------------~~ 109 (186)
T 3a1f_A 82 QERNNAGFLSYNIYLTGWDESQ--AN---HF-----------------------------------------------AV 109 (186)
T ss_dssp HHTTCTTSEEEEEEETTC--------------------------------------------------------------
T ss_pred hhccCCCeEEEEEEEcCCCCCc--cc---ce-----------------------------------------------ee
Confidence 0 0123699999999864310 00 00 00
Q ss_pred CCCCCcchhhHHHHHHHHHhhheeeccceeeeeehhhhhhccccccCCCCccccccccccccccccccccccCcccceee
Q 006160 515 NPFNIHSWWYKGLLFLACMVGGVLIFGGTVIGFWHLWERKSSARENYKDDSIEVDNAQNVGTMAHNDIRKKDTKSSTNIL 594 (658)
Q Consensus 515 ~p~~~~~~~~~~~l~~~~~~~~v~i~g~~~~~~w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 594 (658)
. |. ++ .+. .+++. ..++
T Consensus 110 --------------------------------~---~~------~~--~~~------------------~~g~~--~~~~ 126 (186)
T 3a1f_A 110 --------------------------------H---HD------EE--KDV------------------ITGLK--QKTL 126 (186)
T ss_dssp ----------------------------------------------------------------------------CCEE
T ss_pred --------------------------------c---cc------cc--ccc------------------CCCCc--cccc
Confidence 0 00 00 000 01111 2456
Q ss_pred cCCCCCHHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEeccc
Q 006160 595 YGSRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSF 656 (658)
Q Consensus 595 ~ggRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF 656 (658)
+ ||||++.+++++......++..|++|||++|.++|++.+.+.... ...+.+|+||+|+|
T Consensus 127 ~-gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-~~~~~~~~~~~E~F 186 (186)
T 3a1f_A 127 Y-GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-GPRGVHFIFNKENF 186 (186)
T ss_dssp E-SCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-STTCCEEEEECCCC
T ss_pred c-CCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-CCCCCEEEEEeccC
Confidence 7 899999999887654444689999999999999999999886642 12346799999999
No 10
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.88 E-value=8.7e-22 Score=206.82 Aligned_cols=213 Identities=15% Similarity=0.104 Sum_probs=148.5
Q ss_pred ceEEEEEEEEec-----CceEEEEEeCCCCCCcCCCcEEEEEeCCCC------CCcceeEEeeeCCCC---CCCeEEEEE
Q 006160 122 RTVDVLSASCLP-----CGTVELVLSKPANLRYNALSFFFLQVRELS------WLQWHPFSVSSSPLE---GKYHSSVLI 187 (658)
Q Consensus 122 ~~~~v~sv~~l~-----~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is------~~q~HPFTIaS~p~~---~~~~lsl~I 187 (658)
..++|++++.++ ++++++++..+..+.|+||||++|+++..+ .+++|||||+|+|.+ +.+.++|+|
T Consensus 29 ~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~V 108 (311)
T 3lo8_A 29 FTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108 (311)
T ss_dssp EEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEE
T ss_pred eEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEE
Confidence 367889999998 899999999888899999999999998742 358999999999864 247899999
Q ss_pred EEc---------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCC
Q 006160 188 KVL---------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEA 252 (658)
Q Consensus 188 R~~---------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~ 252 (658)
|.. |.+|+.|.+ +..
T Consensus 109 k~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~------------------------------------------------- 138 (311)
T 3lo8_A 109 RRAVYYDPETGKEDPSKNGVCSNFLCN-SKP------------------------------------------------- 138 (311)
T ss_dssp ECCCCCCTTTCCCCGGGSCHHHHHHHT-CCT-------------------------------------------------
T ss_pred EEEEecccccCcCCcCCCCchhhHHhc-CCC-------------------------------------------------
Confidence 975 888888854 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCC
Q 006160 253 NPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVP 332 (658)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (658)
T Consensus 139 -------------------------------------------------------------------------------- 138 (311)
T 3lo8_A 139 -------------------------------------------------------------------------------- 138 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceE
Q 006160 333 PPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNV 410 (658)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV 410 (658)
+. +|.|+||||..+... ..++++||||||+||||+++++++++.+...+. ...+++
T Consensus 139 -------------------Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v 196 (311)
T 3lo8_A 139 -------------------GD--KIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNY-RFGGLA 196 (311)
T ss_dssp -------------------TC--EEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTC-CCCSEE
T ss_pred -------------------cC--EEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccc-cCCCCE
Confidence 12 477899999876432 367899999999999999999999986542111 113689
Q ss_pred EEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCccccccccccccc----CCCCCCceeEeecCC
Q 006160 411 LIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIY----PVPSGCAMSVLVGTG 486 (658)
Q Consensus 411 ~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~----P~~~d~~~~~v~Gp~ 486 (658)
+|+|++|+.+++.+.+++. ++.. ....+++++.++|++...+.......+..+.... ....+.....+|||.
T Consensus 197 ~l~~g~r~~~d~~~~~el~-~l~~---~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~ 272 (311)
T 3lo8_A 197 WLFLGVANSDSLLYDEEFT-SYLK---QYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK 272 (311)
T ss_dssp EEEEEESSGGGCSSHHHHH-HHHH---HCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG
T ss_pred EEEEecCChHHhhHHHHHH-HHHH---hCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH
Confidence 9999999999986665543 3321 1123689999999876422111111111111110 000145678999998
Q ss_pred CchH
Q 006160 487 NNVW 490 (658)
Q Consensus 487 ~~~w 490 (658)
..+-
T Consensus 273 ~m~~ 276 (311)
T 3lo8_A 273 GMMP 276 (311)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 6543
No 11
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.88 E-value=4.6e-21 Score=202.68 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=118.1
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--Cc-hHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GE-WTE 195 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~-~T~ 195 (658)
...+|.+++.++++++++++..+.. ..|+||||++|+++.. ++|||||+|.+.+ .+.++|.||.. |. +|+
T Consensus 9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~~-~~~l~i~Vk~~~~G~g~S~ 84 (321)
T 2pia_A 9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQE-RNRYVIAVKRDSNGRGGSI 84 (321)
T ss_dssp EEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTTC-CSEEEEEEECCTTSCSHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCCC-CCeEEEEEEEecCCcchhH
Confidence 4678999999999999999998763 3899999999999852 8999999999864 47899999987 65 899
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 196 NLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPL 275 (658)
Q Consensus 196 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (658)
.|++.++.
T Consensus 85 ~L~~~l~~------------------------------------------------------------------------ 92 (321)
T 2pia_A 85 SFIDDTSE------------------------------------------------------------------------ 92 (321)
T ss_dssp HHHHSCCT------------------------------------------------------------------------
T ss_pred HHHhcCCC------------------------------------------------------------------------
Confidence 88654311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCee
Q 006160 276 QEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKI 355 (658)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (658)
++
T Consensus 93 ----------------------------------------------------------------------------Gd-- 94 (321)
T 2pia_A 93 ----------------------------------------------------------------------------GD-- 94 (321)
T ss_dssp ----------------------------------------------------------------------------TC--
T ss_pred ----------------------------------------------------------------------------CC--
Confidence 12
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
++.|+||||.+... ..+++++|||||+||||++++++++..+. .++++|+|++|+.+++.+.+++
T Consensus 95 ~v~v~gP~g~f~l~-~~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~r~~~~~~~~~el 159 (321)
T 2pia_A 95 AVEVSLPRNEFPLD-KRAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLTRDPEGTAFFDEL 159 (321)
T ss_dssp EEEECCCBCCSCCC-TTCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEESCGGGCTTHHHH
T ss_pred EEEEeCCccccccC-CCCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEECChhhhHHHHHH
Confidence 47799999986443 34789999999999999999999998753 1589999999999998666554
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.88 E-value=2.5e-21 Score=203.62 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=147.7
Q ss_pred eEEEEEEEEecCc-----eEEEEEeCCCCCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCC---CCCeEEEEEEEc
Q 006160 123 TVDVLSASCLPCG-----TVELVLSKPANLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKVL 190 (658)
Q Consensus 123 ~~~v~sv~~l~~~-----v~~l~i~~p~~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~---~~~~lsl~IR~~ 190 (658)
.++|++++.+.++ ++++++..+..+.|+||||++|++|... .+++|||||+|+|.. +.+.++|+||..
T Consensus 35 ~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~ 114 (310)
T 3vo2_A 35 VGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 114 (310)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECC
T ss_pred EEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEE
Confidence 5778888888776 9999999877789999999999998643 247899999999863 247999999985
Q ss_pred -----------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCC
Q 006160 191 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 259 (658)
Q Consensus 191 -----------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~ 259 (658)
|.+|+.|.+ +..
T Consensus 115 ~~~~~~~~~~~G~~S~~L~~-l~~-------------------------------------------------------- 137 (310)
T 3vo2_A 115 VYTNDQGEIVKGVCSNFLCD-LKP-------------------------------------------------------- 137 (310)
T ss_dssp EEECTTSCEEECHHHHHHHT-CCT--------------------------------------------------------
T ss_pred EeccCCCCcCCcchhhHHhc-CCC--------------------------------------------------------
Confidence 889988854 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCC
Q 006160 260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP 339 (658)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (658)
T Consensus 138 -------------------------------------------------------------------------------- 137 (310)
T 3vo2_A 138 -------------------------------------------------------------------------------- 137 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc
Q 006160 340 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 418 (658)
Q Consensus 340 ~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~ 418 (658)
++ +|.|+||||..+.. ...+++++|||||+||||+++++++++.+..... ...+++.|+|++|+
T Consensus 138 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~r~ 202 (310)
T 3vo2_A 138 ------------GA--DVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDY-KFSGLAWLFLGVPT 202 (310)
T ss_dssp ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTC-CCCSEEEEEEEESS
T ss_pred ------------CC--EEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccc-cCCCcEEEEEEecC
Confidence 12 47789999987542 2467899999999999999999999985432111 12368999999999
Q ss_pred CcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCCCcccccccccccc----cCC-CCCCceeEeecCCCc
Q 006160 419 SNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPLEEGELHKTMSSSI----YPV-PSGCAMSVLVGTGNN 488 (658)
Q Consensus 419 ~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~----~P~-~~d~~~~~v~Gp~~~ 488 (658)
.+++.+.+++. ++.. ....++++++++|++...+.......+..+... ... ..+.....+|||..-
T Consensus 203 ~~d~~~~~el~-~l~~---~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~~M 273 (310)
T 3vo2_A 203 SDSLLYKEELE-KMKE---MAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGLKGM 273 (310)
T ss_dssp GGGCCSHHHHH-HHHH---HCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEESTTH
T ss_pred hhhcccHHHHH-HHHH---hCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCCHHH
Confidence 99886665543 3321 112379999999998643222211112111111 000 124677899999864
No 13
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.87 E-value=2.2e-21 Score=198.05 Aligned_cols=172 Identities=23% Similarity=0.256 Sum_probs=130.8
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 199 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~ 199 (658)
..++|++++.+++++++++++.+..+.|+||||++|.++..+..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 4 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~~~~G~~s~~l~~ 81 (257)
T 2qdx_A 4 YTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIKVPDGPLTSRLQH 81 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEEcCCCeEEEEEeCCCCCccCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEEeCCCcchhHHHh
Confidence 457889999999999999999887789999999999998666778999999999864 7999999998 889988732
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 279 (658)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (658)
+ .
T Consensus 82 -l---~-------------------------------------------------------------------------- 83 (257)
T 2qdx_A 82 -L---K-------------------------------------------------------------------------- 83 (257)
T ss_dssp -C---C--------------------------------------------------------------------------
T ss_pred -C---C--------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160 280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 359 (658)
+++ ++.|
T Consensus 84 -----------------------------------------------------------------------~Gd--~v~v 90 (257)
T 2qdx_A 84 -----------------------------------------------------------------------EGD--ELMV 90 (257)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 012 4678
Q ss_pred E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCcc
Q 006160 360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFF 437 (658)
Q Consensus 360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~ 437 (658)
. ||||.+..... .+++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.+++.+++....+
T Consensus 91 ~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~ 164 (257)
T 2qdx_A 91 SRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER------YEKVILVHGVRWVSELAYADFITKVLPEHEY 164 (257)
T ss_dssp CSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH------CSEEEEEEEESSGGGCTTHHHHHTTGGGCTT
T ss_pred ecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC------CCeEEEEEEcCCHHHhHhHHHHHHHHHhchh
Confidence 8 99998644322 37899999999999999999999876532 3589999999999998665554313211000
Q ss_pred C-C--CCceEEEEEEcCC
Q 006160 438 S-D--KLNLETFIYVTRE 452 (658)
Q Consensus 438 ~-~--~~~l~I~iyVT~~ 452 (658)
. + ..+++++.++|++
T Consensus 165 ~~~~~~~~~~~~~~~s~~ 182 (257)
T 2qdx_A 165 FGDQVKEKLIYYPLVTRE 182 (257)
T ss_dssp THHHHHHHEEEEEEESSS
T ss_pred hhccCCCcEEEEEEecCC
Confidence 0 0 1357777777765
No 14
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.87 E-value=5.6e-21 Score=197.09 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=130.0
Q ss_pred eEEEEEEEEecCceEEEEEeCCCCCCcCCCcEEEEEeCCC-CCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPANLRYNALSFFFLQVREL-SWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTENLRD 199 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~~~~~~PGQ~v~L~vp~i-s~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~L~~ 199 (658)
.++|++++.+++++++++++.+..+.|+||||++|+++.. +..++|||||+|.+.+ +.++|+||.. |.+|+.|.+
T Consensus 18 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~~~~G~~s~~l~~ 95 (272)
T 2bgi_A 18 AQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIKVPDGPLTSRLQH 95 (272)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEcCCCEEEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEEccCCCchhHHHh
Confidence 5788999999999999999988778999999999999853 5678999999999864 7999999998 999988731
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 279 (658)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (658)
+ .
T Consensus 96 -l---~-------------------------------------------------------------------------- 97 (272)
T 2bgi_A 96 -I---K-------------------------------------------------------------------------- 97 (272)
T ss_dssp -C---C--------------------------------------------------------------------------
T ss_pred -C---C--------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160 280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 359 (658)
+++ ++.|
T Consensus 98 -----------------------------------------------------------------------~Gd--~v~v 104 (272)
T 2bgi_A 98 -----------------------------------------------------------------------VGE--QIIL 104 (272)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 012 4667
Q ss_pred E-CccCCCccCcc-ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccC-Cc
Q 006160 360 E-GPYGHEVPYHL-MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESIC-PF 436 (658)
Q Consensus 360 e-GPyG~~~~~~~-~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~-~~ 436 (658)
+ ||||.+..... .+++++|||||+||||++++++++..+. ..++++|+|++|+.+++.+.+++.+++.. +.
T Consensus 105 ~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~ 178 (272)
T 2bgi_A 105 RPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE------KFDEVIMMHACRTVAELEYGRQLVEALQEDPL 178 (272)
T ss_dssp EEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT------SCSEEEEEEEESSSGGGHHHHHHHHHHHHCTT
T ss_pred eeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC------CCCcEEEEEEeCCHHHhhHHHHHHHHHHhcch
Confidence 8 99998654322 3789999999999999999999876532 13689999999999999665554313211 00
Q ss_pred cCC--CCceEEEEEEcCC
Q 006160 437 FSD--KLNLETFIYVTRE 452 (658)
Q Consensus 437 ~~~--~~~l~I~iyVT~~ 452 (658)
+.+ ..+++++.++|++
T Consensus 179 ~~~~~~~~~~~~~~~s~~ 196 (272)
T 2bgi_A 179 IGELVEGKLKYYPTTTRE 196 (272)
T ss_dssp TTTTSTTTEEEEEEESSS
T ss_pred hhcccCCcEEEEEEecCC
Confidence 001 2468888788765
No 15
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.87 E-value=2e-21 Score=210.69 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=132.8
Q ss_pred cceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCCCC--CCcceeEEeeeCCCCCCCeEEEEEEEc--Cch
Q 006160 121 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRELS--WLQWHPFSVSSSPLEGKYHSSVLIKVL--GEW 193 (658)
Q Consensus 121 ~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~is--~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~ 193 (658)
.+.++|++.+.++++++++++..+.. ..|+||||+.|+++..+ ..++|||||+|.|.+ +.++|+||.. |.+
T Consensus 152 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~--~~~~i~Vk~~~~G~~ 229 (396)
T 1gvh_A 152 TRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDG--KGYRIAVKREEGGQV 229 (396)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCCS--SCEEEEEECCTTCHH
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCCC--CeEEEEEEEcCCCcc
Confidence 35788999999999999999987642 58999999999998433 368999999999863 7899999998 999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 194 TENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGP 273 (658)
Q Consensus 194 T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (658)
|+.|++.+..
T Consensus 230 S~~L~~~l~~---------------------------------------------------------------------- 239 (396)
T 1gvh_A 230 SNWLHNHANV---------------------------------------------------------------------- 239 (396)
T ss_dssp HHHHHHTCCT----------------------------------------------------------------------
T ss_pred hHHHHhcCCC----------------------------------------------------------------------
Confidence 9988764311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 274 PLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPT 353 (658)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (658)
|+
T Consensus 240 ------------------------------------------------------------------------------Gd 241 (396)
T 1gvh_A 240 ------------------------------------------------------------------------------GD 241 (396)
T ss_dssp ------------------------------------------------------------------------------TC
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred eeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhcc
Q 006160 354 KITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESI 433 (658)
Q Consensus 354 ~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell 433 (658)
++.|.||+|.+.......++++|||||+||||++++++++..+.. .++|+|+|++|+.+++.+.+++ +++.
T Consensus 242 --~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~------~~~v~l~~~~r~~~~~~~~~el-~~l~ 312 (396)
T 1gvh_A 242 --VVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH------TAQVNWFHAAENGDVHAFADEV-KELG 312 (396)
T ss_dssp --EEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCTTTCCSHHHH-HHHH
T ss_pred --EEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC------CCcEEEEEEeCCHHHhhhHHHH-HHHH
Confidence 477999999754332457899999999999999999999987641 3679999999999998665443 3332
Q ss_pred CCccCCCCceEEEEEEcCCC
Q 006160 434 CPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~ 453 (658)
.+..+++++++++++.
T Consensus 313 ----~~~~~~~~~~~~s~~~ 328 (396)
T 1gvh_A 313 ----QSLPRFTAHTWYRQPS 328 (396)
T ss_dssp ----HTSSSEEEEEEESSCC
T ss_pred ----HHCCCeEEEEEECCCC
Confidence 2334688888887653
No 16
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.87 E-value=1.3e-21 Score=197.64 Aligned_cols=205 Identities=16% Similarity=0.192 Sum_probs=149.0
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
..+++++++.+++++.++++..+. .+.|+||||++|+++..+..++||||++|.+.+ .+.++|+||.. |.+|+.
T Consensus 12 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~-~~~~~l~vk~~~~G~~S~~ 90 (243)
T 2eix_A 12 KKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE-KGYFDLIIKVYEKGQMSQY 90 (243)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCTTCHHHHH
T ss_pred EEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC-CCEEEEEEEEcCCCCcchH
Confidence 467899999999999888888664 478999999999998656678999999999864 48999999997 889988
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|.+ + .
T Consensus 91 l~~-l---~----------------------------------------------------------------------- 95 (243)
T 2eix_A 91 IDH-L---N----------------------------------------------------------------------- 95 (243)
T ss_dssp HHT-C---C-----------------------------------------------------------------------
T ss_pred hhc-C---C-----------------------------------------------------------------------
Confidence 742 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
+++ +
T Consensus 96 --------------------------------------------------------------------------~Gd--~ 99 (243)
T 2eix_A 96 --------------------------------------------------------------------------PGD--F 99 (243)
T ss_dssp --------------------------------------------------------------------------TTC--E
T ss_pred --------------------------------------------------------------------------CCC--E
Confidence 012 4
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 436 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~ 436 (658)
+.|+||||........+++++|||||+||||+++++++++++.. ..++++|+|++|+.+++.+.+++ +++.
T Consensus 100 v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~-----~~~~v~l~~~~r~~~~~~~~~el-~~l~--- 170 (243)
T 2eix_A 100 LQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK-----EKTIINLIFANVNEDDILLRTEL-DDMA--- 170 (243)
T ss_dssp EEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEEEEEEEEEGGGCTTHHHH-HHHH---
T ss_pred EEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC-----CCcEEEEEEEcCCHHHhhHHHHH-HHHH---
Confidence 77999999964433457899999999999999999999976421 24689999999999998555443 3332
Q ss_pred cCCCCceEEEEEEcCCCCCC-CCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 437 FSDKLNLETFIYVTRETEPP-LEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 437 ~~~~~~l~I~iyVT~~~~~~-~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+..+++++..++++.+.+ ...+.+...++.+..+.+.+.....+|||...
T Consensus 171 -~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy~CGp~~m 222 (243)
T 2eix_A 171 -KKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCGPPMM 222 (243)
T ss_dssp -HHCTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEEEESSHHH
T ss_pred -HHCCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEEEECCHHH
Confidence 1233688988888754322 22233322333344444444567889999854
No 17
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.87 E-value=1e-20 Score=205.63 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=130.1
Q ss_pred cceEEEEEEEEecCceEEEEEeCCCC---CCcCCCcEEEEEeCC-CC-CCcceeEEeeeCCCCCCCeEEEEEEEc-----
Q 006160 121 RRTVDVLSASCLPCGTVELVLSKPAN---LRYNALSFFFLQVRE-LS-WLQWHPFSVSSSPLEGKYHSSVLIKVL----- 190 (658)
Q Consensus 121 ~~~~~v~sv~~l~~~v~~l~i~~p~~---~~~~PGQ~v~L~vp~-is-~~q~HPFTIaS~p~~~~~~lsl~IR~~----- 190 (658)
.+.++|++.+.+++++.++++..+.. ..|+||||+.|+++. .. ..++|||||+|.|.+ +.++|+||..
T Consensus 154 ~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~~--~~~~i~Vk~~~~~~~ 231 (403)
T 1cqx_A 154 WRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNG--RTYRISVKREGGGPQ 231 (403)
T ss_dssp CEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCCS--SCEEEEEECCCBTTB
T ss_pred ceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCCC--CeEEEEEEECCCCCC
Confidence 35788999999999999999986542 589999999999983 22 368999999999863 7899999998
Q ss_pred --CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCC
Q 006160 191 --GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGA 268 (658)
Q Consensus 191 --G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~ 268 (658)
|.+|+.|++.+..
T Consensus 232 ~~G~~S~~L~~~l~~----------------------------------------------------------------- 246 (403)
T 1cqx_A 232 PPGYVSNLLHDHVNV----------------------------------------------------------------- 246 (403)
T ss_dssp CCCHHHHHHHHHCCT-----------------------------------------------------------------
T ss_pred CCCeehHHHhhCCCC-----------------------------------------------------------------
Confidence 7789888764311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 269 PPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHP 348 (658)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (658)
T Consensus 247 -------------------------------------------------------------------------------- 246 (403)
T 1cqx_A 247 -------------------------------------------------------------------------------- 246 (403)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 349 LLPPTKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 349 ~~~~~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
|+ ++.|.||+|.+.......++++|||||+||||+++++++++. . ..++|+|+|++|+.+++.+.++
T Consensus 247 ---Gd--~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~------~~~~v~l~~~~r~~~~~~~~~e- 313 (403)
T 1cqx_A 247 ---GD--QVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A------PPRQVVFVHGARNSAVHAMRDR- 313 (403)
T ss_dssp ---TC--EEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S------SCCCEEEEEEESCSSSCHHHHH-
T ss_pred ---CC--EEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C------CCCcEEEEEEeCChhhCcHHHH-
Confidence 12 477999999754332467899999999999999999999975 2 1368999999999999865443
Q ss_pred HHhccCCccCCCCceEEEEEEcCCC
Q 006160 429 YKESICPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 429 l~ell~~~~~~~~~l~I~iyVT~~~ 453 (658)
++++. .+..+++++++++++.
T Consensus 314 l~~l~----~~~~~~~~~~~~s~~~ 334 (403)
T 1cqx_A 314 LREAA----KTYENLDLFVFYDQPL 334 (403)
T ss_dssp HHHHH----HHCTTEEEEEEESSCC
T ss_pred HHHHH----HhCCCcEEEEEECCCC
Confidence 33332 2334688888887654
No 18
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.86 E-value=3.5e-21 Score=204.48 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=147.1
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--CchHHH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL--GEWTEN 196 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~--G~~T~~ 196 (658)
...++.+++.+++++++++++.+. .+.|+||||++|++|. ..++|||||+|.+. .+.++|+||.. |.+|+.
T Consensus 109 ~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~--~~~l~~~vk~~~~G~~S~~ 184 (338)
T 1krh_A 109 FEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPG--TTETRSYSFSSQPG--NRLTGFVVRNVPQGKMSEY 184 (338)
T ss_dssp EEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTT--SSCEEEEECCSCTT--CSEEEEEEECCTTCHHHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCC--CCccccccccCCCC--CCeEEEEEEEcCCCCchhh
Confidence 357888999999999999998776 5789999999999985 35799999999986 38999999999 889988
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 197 LRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQ 276 (658)
Q Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (658)
|++.+..
T Consensus 185 L~~~l~~------------------------------------------------------------------------- 191 (338)
T 1krh_A 185 LSVQAKA------------------------------------------------------------------------- 191 (338)
T ss_dssp HHTTCCT-------------------------------------------------------------------------
T ss_pred HhhccCC-------------------------------------------------------------------------
Confidence 8543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeE
Q 006160 277 EEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKIT 356 (658)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (658)
++ +
T Consensus 192 ---------------------------------------------------------------------------Gd--~ 194 (338)
T 1krh_A 192 ---------------------------------------------------------------------------GD--K 194 (338)
T ss_dssp ---------------------------------------------------------------------------TC--E
T ss_pred ---------------------------------------------------------------------------CC--E
Confidence 12 4
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCc
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPF 436 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~ 436 (658)
+.|+||||.+.... ..++++|||||+||||++++++++..+.. .++++|+|++|+.+++.+.+++ +++.
T Consensus 195 v~v~gP~G~f~~~~-~~~~~vliagGtGiaP~~s~l~~l~~~~~------~~~v~l~~~~r~~~d~~~~~el-~~l~--- 263 (338)
T 1krh_A 195 MSFTGPFGSFYLRD-VKRPVLMLAGGTGIAPFLSMLQVLEQKGS------EHPVRLVFGVTQDCDLVALEQL-DALQ--- 263 (338)
T ss_dssp EEEEEEECSCSCCC-CSSCEEEEEEGGGHHHHHHHHHHHHHHCC------SSCEEEEEEESSGGGCCCHHHH-HHHH---
T ss_pred EEEECCccceEeCC-CCceEEEEEccccHhHHHHHHHHHHHcCC------CCeEEEEEEeCCHHHhhhHHHH-HHHH---
Confidence 77999999976432 34899999999999999999999987541 3679999999999998555544 3322
Q ss_pred cCCCCceEEEEEEcCCCCCCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 437 FSDKLNLETFIYVTRETEPPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 437 ~~~~~~l~I~iyVT~~~~~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+..+++++.+++++++.+...+.+...+.....+. ....+.+|||+..
T Consensus 264 -~~~~~~~~~~~~s~~~~~~~~~g~v~~~l~~~~~~~--~~~~vy~CGp~~m 312 (338)
T 1krh_A 264 -QKLPWFEYRTVVAHAESQHERKGYVTGHIEYDWLNG--GEVDVYLCGPVPM 312 (338)
T ss_dssp -HHCTTEEEEEEETTCCSSSSEESCSGGGCCGGGGGG--GCSEEEEEEEHHH
T ss_pred -HhCCCeEEEEEEecCCCCCCccCccCHHHHHhhccc--CCcEEEEECCHHH
Confidence 123468999999987653332333332222122232 3456789999854
No 19
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.85 E-value=3.8e-20 Score=201.90 Aligned_cols=175 Identities=15% Similarity=0.201 Sum_probs=130.8
Q ss_pred ceEEEEEEEEecC-----ceEEEEEeCCC-CCCcCCCcEEEEEeCCC---C-CCcceeEEeeeCCCC---CCCeEEEEEE
Q 006160 122 RTVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVREL---S-WLQWHPFSVSSSPLE---GKYHSSVLIK 188 (658)
Q Consensus 122 ~~~~v~sv~~l~~-----~v~~l~i~~p~-~~~~~PGQ~v~L~vp~i---s-~~q~HPFTIaS~p~~---~~~~lsl~IR 188 (658)
...+|++++.+.+ ++++|++..+. .+.|+||||++|.++.. + .+++|||||+|++.+ +.+.++|+||
T Consensus 123 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk 202 (402)
T 2b5o_A 123 FLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVR 202 (402)
T ss_dssp EEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEE
T ss_pred EEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEE
Confidence 3578899999987 89999999775 48999999999998853 2 368999999999863 1478999999
Q ss_pred E------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCC
Q 006160 189 V------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHV 256 (658)
Q Consensus 189 ~------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 256 (658)
. .|.+|+.|.+ +..
T Consensus 203 ~~~y~~~~~~~~~~G~~S~~L~~-l~~----------------------------------------------------- 228 (402)
T 2b5o_A 203 QLEYQDPESGETVYGVCSTYLCN-LPV----------------------------------------------------- 228 (402)
T ss_dssp CCEEECTTTCCEEECHHHHHHHT-CCT-----------------------------------------------------
T ss_pred EeeecccccCcCCCCchhHHHhh-CCC-----------------------------------------------------
Confidence 7 5788888754 100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCC
Q 006160 257 GPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQG 336 (658)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (658)
T Consensus 229 -------------------------------------------------------------------------------- 228 (402)
T 2b5o_A 229 -------------------------------------------------------------------------------- 228 (402)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCC-CeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEE
Q 006160 337 SPPQRPPPSRHPLLPP-TKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVW 414 (658)
Q Consensus 337 ~~~~~~~~~~~~~~~~-~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW 414 (658)
+ + ++.|+||||..+.. ....+++||||||+||||+++++++++.+..... ...++++|+|
T Consensus 229 ---------------G~d--~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~-~~~~~v~L~~ 290 (402)
T 2b5o_A 229 ---------------GTD--DVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY-KFKGKAWLIF 290 (402)
T ss_dssp ---------------TCC--CEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC-CCCSEEEEEE
T ss_pred ---------------CCc--eEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccc-cccCCEEEEE
Confidence 1 1 36789999987532 2347899999999999999999999986532110 1246899999
Q ss_pred eeccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCC
Q 006160 415 AVKKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRET 453 (658)
Q Consensus 415 ~vR~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~ 453 (658)
++|+.+|+.+.+++ +++. .+. .+++++.+++++.
T Consensus 291 g~R~~~d~~~~~eL-~~l~----~~~~~~~~v~~~~S~~~ 325 (402)
T 2b5o_A 291 GVPYTANILYKDDF-EKMA----AENPDNFRLTYAISREQ 325 (402)
T ss_dssp EESSGGGCTTHHHH-HHHH----HHCTTTEEEEEEETTTC
T ss_pred ecCCHHHhHHHHHH-HHHH----HhCCCcEEEEEEECCCC
Confidence 99999988665554 3332 122 2688888888764
No 20
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.85 E-value=2.8e-20 Score=190.85 Aligned_cols=207 Identities=17% Similarity=0.193 Sum_probs=145.5
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------- 190 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-------- 190 (658)
..++|++++.+++++.++++..+. .+.|+||||++|.++..+..++|||||+|.+.+ .+.++|+||.+
T Consensus 13 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~ 91 (270)
T 2cnd_A 13 IHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKF 91 (270)
T ss_dssp EEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC-CSEEEEEEECCCSSCBTTB
T ss_pred EEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC-CCEEEEEEEEeccCccccc
Confidence 467899999999999999998764 368999999999998666778999999999864 48999999975
Q ss_pred ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160 191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267 (658)
Q Consensus 191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 267 (658)
|.+|+.|. .+..
T Consensus 92 ~~~G~~s~~l~-~l~~---------------------------------------------------------------- 106 (270)
T 2cnd_A 92 PNGGLMTQYLD-SLPV---------------------------------------------------------------- 106 (270)
T ss_dssp TTCCHHHHHHH-HCCT----------------------------------------------------------------
T ss_pred CCCCchhhHHh-cCCC----------------------------------------------------------------
Confidence 77888874 2110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (658)
T Consensus 107 -------------------------------------------------------------------------------- 106 (270)
T 2cnd_A 107 -------------------------------------------------------------------------------- 106 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEECccCCCc-------cCc---cccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeec
Q 006160 348 PLLPPTKITASVEGPYGHEV-------PYH---LMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVK 417 (658)
Q Consensus 348 ~~~~~~~~~v~veGPyG~~~-------~~~---~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR 417 (658)
++ ++.|+||||... ... ...++++|||||+||||+++++++++.+.. ...++++|+|++|
T Consensus 107 ----Gd--~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~----~~~~~v~l~~~~r 176 (270)
T 2cnd_A 107 ----GS--YIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQP----EDHTEMHLVYANR 176 (270)
T ss_dssp ----TC--EEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTT----TCCCEEEEEEEES
T ss_pred ----CC--EEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCC----CCCcEEEEEEEcC
Confidence 02 477999999731 110 247899999999999999999999987521 1246899999999
Q ss_pred cCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCC---C-CCCCcccccccccccccCCCCCCceeEeecCCCc
Q 006160 418 KSNELSLLSNFYKESICPFFSDKLNLETFIYVTRET---E-PPLEEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 418 ~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~---~-~~~~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
+.+++.+.+++. ++.. ....+++++..++++. + +....+.+...++.+..+...+...+.+|||...
T Consensus 177 ~~~d~~~~~el~-~l~~---~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m 247 (270)
T 2cnd_A 177 TEDDILLRDELD-RWAA---EYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPPPM 247 (270)
T ss_dssp CGGGCTTHHHHH-HHHH---HCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCHHH
T ss_pred CHHHcchHHHHH-HHHH---HCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEEEECCHHH
Confidence 999986655543 3221 1123588877777632 1 1112233333333333344334567789999854
No 21
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.84 E-value=2.6e-20 Score=191.75 Aligned_cols=206 Identities=18% Similarity=0.260 Sum_probs=147.1
Q ss_pred ceEEEEEEEEecCceEEEEEeCCC---CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEEc--------
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPA---NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKVL-------- 190 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~---~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~~-------- 190 (658)
..++|++++.+++++.++++..+. .+.|+||||++|+++..+..++|||||+|++.+ .+.++|+||..
T Consensus 17 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~l~vk~~~~~~~~~~ 95 (275)
T 1umk_A 17 YPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD-KGFVDLVIKVYFKDTHPKF 95 (275)
T ss_dssp EEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC-CSEEEEEEECCCSSSBTTB
T ss_pred EEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCC-CCeEEEEEEEeccCccccc
Confidence 467899999999999999988664 368999999999998666789999999999863 48999999987
Q ss_pred ---CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCC
Q 006160 191 ---GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQG 267 (658)
Q Consensus 191 ---G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 267 (658)
|.+|+.|.+ +..
T Consensus 96 ~~~G~~S~~L~~-l~~---------------------------------------------------------------- 110 (275)
T 1umk_A 96 PAGGKMSQYLES-MQI---------------------------------------------------------------- 110 (275)
T ss_dssp TTCCHHHHHHHH-CCT----------------------------------------------------------------
T ss_pred CCCChhHHHHhc-CCC----------------------------------------------------------------
Confidence 889988842 100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 268 APPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRH 347 (658)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (658)
T Consensus 111 -------------------------------------------------------------------------------- 110 (275)
T 1umk_A 111 -------------------------------------------------------------------------------- 110 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCeeEEEEECccCCCccC----------------ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEE
Q 006160 348 PLLPPTKITASVEGPYGHEVPY----------------HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVL 411 (658)
Q Consensus 348 ~~~~~~~~~v~veGPyG~~~~~----------------~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~ 411 (658)
++ ++.|+||||..... ...++++||||||+||||+++++++++++.. ..++|+
T Consensus 111 ----Gd--~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~-----~~~~v~ 179 (275)
T 1umk_A 111 ----GD--TIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD-----DHTVCH 179 (275)
T ss_dssp ----TC--EEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT-----CCCEEE
T ss_pred ----CC--EEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC-----CCcEEE
Confidence 12 47899999986320 0257899999999999999999999976421 246899
Q ss_pred EEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCCCCC-CcccccccccccccCCCCCCceeEeecCCCc
Q 006160 412 IVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETEPPL-EEGELHKTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 412 liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~~~~-~~~~~~~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
|+|++|+.+++.+.+++ +++.. ....+++++..++++.+.+. ..+.+...++.+..+...+...+.+|||...
T Consensus 180 l~~~~r~~~d~~~~~el-~~l~~---~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp~~m 253 (275)
T 1umk_A 180 LLFANQTEKDILLRPEL-EELRN---KHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPM 253 (275)
T ss_dssp EEEEESSGGGCTTHHHH-HHHHH---HCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGCCEEEEESCHHH
T ss_pred EEEEcCCHHHhhHHHHH-HHHHH---hCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCCCCCeEEEEECCHHH
Confidence 99999999998665544 33321 11125788777777543222 2233332333344443334567899999854
No 22
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.84 E-value=1.2e-19 Score=190.81 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=145.5
Q ss_pred eEEEEEEEEecC-----ceEEEEEeCCCCCCcCCCcEEEEEeCCC----CCCcceeEEeeeCCCC---CCCeEEEEEEEc
Q 006160 123 TVDVLSASCLPC-----GTVELVLSKPANLRYNALSFFFLQVREL----SWLQWHPFSVSSSPLE---GKYHSSVLIKVL 190 (658)
Q Consensus 123 ~~~v~sv~~l~~-----~v~~l~i~~p~~~~~~PGQ~v~L~vp~i----s~~q~HPFTIaS~p~~---~~~~lsl~IR~~ 190 (658)
.++|++++.+++ +++++++..+..+.|+||||++|.++.. ..+++|||||+|++.+ +.+.++|+||..
T Consensus 39 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~ 118 (314)
T 1fnb_A 39 VGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL 118 (314)
T ss_dssp EEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence 578888888876 8999999987778999999999999863 2368999999999853 247899999963
Q ss_pred -----------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCC
Q 006160 191 -----------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPP 259 (658)
Q Consensus 191 -----------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~ 259 (658)
|.+|+.|.+ +..
T Consensus 119 ~y~~~~g~~~~G~~S~~L~~-l~~-------------------------------------------------------- 141 (314)
T 1fnb_A 119 IYTNDAGETIKGVCSNFLCD-LKP-------------------------------------------------------- 141 (314)
T ss_dssp EEECTTSCEEECHHHHHHHH-CCT--------------------------------------------------------
T ss_pred EeccCCCCcCCCchhhHhhc-CCC--------------------------------------------------------
Confidence 888998875 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCC
Q 006160 260 LPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPP 339 (658)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (658)
T Consensus 142 -------------------------------------------------------------------------------- 141 (314)
T 1fnb_A 142 -------------------------------------------------------------------------------- 141 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc
Q 006160 340 QRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK 418 (658)
Q Consensus 340 ~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~ 418 (658)
+. +|.|+||||..+.. ....+++||||||+||||+++++++++.+..... ....+++|+|++|+
T Consensus 142 ------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~-~~~~~v~L~~g~R~ 206 (314)
T 1fnb_A 142 ------------GA--EVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDY-KFNGLAWLFLGVPT 206 (314)
T ss_dssp ------------TC--EEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTB-CCCSEEEEEEEESS
T ss_pred ------------CC--EEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccc-cCCCCEEEEEecCC
Confidence 02 47799999987542 2347899999999999999999999986532111 11368999999999
Q ss_pred CcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCCCCCCccccccccccc----ccCCC-CCCceeEeecCCCch
Q 006160 419 SNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETEPPLEEGELHKTMSSS----IYPVP-SGCAMSVLVGTGNNV 489 (658)
Q Consensus 419 ~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~~~~~~~~~~~~~v~~----~~P~~-~d~~~~~v~Gp~~~~ 489 (658)
.+++.+.+++ +++. .+. .+++++.++|++++.+.+.....+..+.. +.... .+.....+|||...+
T Consensus 207 ~~d~~~~~el-~~l~----~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~~m~ 278 (314)
T 1fnb_A 207 SSSLLYKEEF-EKMK----EKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGME 278 (314)
T ss_dssp GGGCCSHHHH-HHHH----HHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECTTHH
T ss_pred HHHhhhHHHH-HHHH----HhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 9988665554 3322 122 26889888998754222111111111111 10001 135677899998643
No 23
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.83 E-value=2e-19 Score=188.02 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=130.6
Q ss_pred eEEEEEEEEecC-----ceEEEEEeCCC-CCCcCCCcEEEEEeCCCC----CCcceeEEeeeCCCC---CCCeEEEEEEE
Q 006160 123 TVDVLSASCLPC-----GTVELVLSKPA-NLRYNALSFFFLQVRELS----WLQWHPFSVSSSPLE---GKYHSSVLIKV 189 (658)
Q Consensus 123 ~~~v~sv~~l~~-----~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is----~~q~HPFTIaS~p~~---~~~~lsl~IR~ 189 (658)
..+|++.+.+.+ +++++++..+. .+.|+||||++|.++... .+++|||||+|++.. +.+.++|+||.
T Consensus 23 ~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~ 102 (304)
T 2bmw_A 23 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ 102 (304)
T ss_dssp EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence 578888888887 89999998764 579999999999998642 368999999999852 24799999997
Q ss_pred ------------cCchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCC
Q 006160 190 ------------LGEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVG 257 (658)
Q Consensus 190 ------------~G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 257 (658)
.|.+|+.|.+ +..
T Consensus 103 ~~y~~~~~~~~~~G~~S~~L~~-l~~------------------------------------------------------ 127 (304)
T 2bmw_A 103 LEYKHPESGETVYGVCSTYLTH-IEP------------------------------------------------------ 127 (304)
T ss_dssp CEECSSSSSSCEECHHHHHHHT-CCT------------------------------------------------------
T ss_pred EEeeccccCcCCCcchhhHHhc-CCC------------------------------------------------------
Confidence 4778888754 100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCC
Q 006160 258 PPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGS 337 (658)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (658)
T Consensus 128 -------------------------------------------------------------------------------- 127 (304)
T 2bmw_A 128 -------------------------------------------------------------------------------- 127 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCeeEEEEECccCCCccC-ccccceEEEEEcCcchhhhHHHHHHHHHhhcc--CCC-CCCceEEEE
Q 006160 338 PPQRPPPSRHPLLPPTKITASVEGPYGHEVPY-HLMYENLILVAGGIGISPFLAILSDILHRINE--GKS-CLPRNVLIV 413 (658)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~-~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~--~~~-~~~~kV~li 413 (658)
+. ++.|+||||..+.. ....+++||||||+||||+++++++++.+.+. +.. ....+++|+
T Consensus 128 --------------Gd--~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~ 191 (304)
T 2bmw_A 128 --------------GS--EVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLV 191 (304)
T ss_dssp --------------TC--EEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEE
T ss_pred --------------CC--EEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEE
Confidence 12 47799999986532 23578999999999999999999999865421 000 013579999
Q ss_pred EeeccCcchhhHHHHHHhccCCccCCC-CceEEEEEEcCCCC
Q 006160 414 WAVKKSNELSLLSNFYKESICPFFSDK-LNLETFIYVTRETE 454 (658)
Q Consensus 414 W~vR~~~dl~~l~~~l~ell~~~~~~~-~~l~I~iyVT~~~~ 454 (658)
|++|+.+++.+.+++ +++. .+. .+++++.++|++..
T Consensus 192 ~g~r~~~d~~~~~el-~~~~----~~~~~~~~~~~~~s~~~~ 228 (304)
T 2bmw_A 192 FGVPTTPNILYKEEL-EEIQ----QKYPDNFRLTYAISREQK 228 (304)
T ss_dssp EEESSGGGCTTHHHH-HHHH----HHCTTTEEEEEEETTTCB
T ss_pred EEeCChHhcchHHHH-HHHH----HhCCCcEEEEEEEcCCCC
Confidence 999999988655544 3332 122 36889999998753
No 24
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.82 E-value=1.8e-19 Score=184.86 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=119.2
Q ss_pred eEEEEEEEEecCceEEEEEeCCC-CCCcCCCcEEEEEeCCCCCCcceeEEeeeCCCCCCCeEEEEEEE--cCchHHHHHH
Q 006160 123 TVDVLSASCLPCGTVELVLSKPA-NLRYNALSFFFLQVRELSWLQWHPFSVSSSPLEGKYHSSVLIKV--LGEWTENLRD 199 (658)
Q Consensus 123 ~~~v~sv~~l~~~v~~l~i~~p~-~~~~~PGQ~v~L~vp~is~~q~HPFTIaS~p~~~~~~lsl~IR~--~G~~T~~L~~ 199 (658)
..+|++++.+++++++++++.+. ...|+||||++|.++..+..++|||||+|.+.+ .+.++|+||. .|.+|+.|.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~~G~~S~~l~~ 85 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR-AKTCTILYRIGDETTGTYKLSK 85 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT-TTEEEEEEECCCTTSHHHHHHT
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecCC-CCEEEEEEEEecCCchHHHHhc
Confidence 57889999999999999999776 368999999999998766789999999999863 4899999999 8999987741
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006160 200 YILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYENLILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEG 279 (658)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (658)
+ .
T Consensus 86 l----~-------------------------------------------------------------------------- 87 (262)
T 1ep3_B 86 L----E-------------------------------------------------------------------------- 87 (262)
T ss_dssp C----C--------------------------------------------------------------------------
T ss_pred C----C--------------------------------------------------------------------------
Confidence 1 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEE
Q 006160 280 PPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISETEPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASV 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 359 (658)
+++ ++.|
T Consensus 88 -----------------------------------------------------------------------~Gd--~v~v 94 (262)
T 1ep3_B 88 -----------------------------------------------------------------------SGA--KVDV 94 (262)
T ss_dssp -----------------------------------------------------------------------TTC--EEEE
T ss_pred -----------------------------------------------------------------------CCC--EEEE
Confidence 012 4779
Q ss_pred ECccCCCccCcc--ccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 360 EGPYGHEVPYHL--MYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 360 eGPyG~~~~~~~--~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
+||||+.+.... ..++++|||||+||||++++++++.++. ++++|+|++|+.+++.+.+++
T Consensus 95 ~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~--------~~v~l~~~~r~~~~~~~~~el 157 (262)
T 1ep3_B 95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFASENVKILENEF 157 (262)
T ss_dssp EEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEESSGGGCCCHHHH
T ss_pred EcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHhhhHHHH
Confidence 999998433222 3789999999999999999999998742 479999999999998665554
No 25
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.80 E-value=5.3e-19 Score=185.83 Aligned_cols=173 Identities=18% Similarity=0.245 Sum_probs=130.0
Q ss_pred eEEEEEEEEecCc--------------eEEEEEeCCCC-CCcCCCcEEEEEeCCCC----C-------CcceeEEeeeCC
Q 006160 123 TVDVLSASCLPCG--------------TVELVLSKPAN-LRYNALSFFFLQVRELS----W-------LQWHPFSVSSSP 176 (658)
Q Consensus 123 ~~~v~sv~~l~~~--------------v~~l~i~~p~~-~~~~PGQ~v~L~vp~is----~-------~q~HPFTIaS~p 176 (658)
.++|++++.++++ ++++++..+.. +.|+||||++|.++... . +++|||||+|++
T Consensus 23 ~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p 102 (314)
T 2rc5_A 23 KAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPS 102 (314)
T ss_dssp EEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCT
T ss_pred EEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCc
Confidence 5788899999877 99999998764 89999999999998642 2 588999999998
Q ss_pred CC---CCCeEEEEEEEc------------CchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhhh
Q 006160 177 LE---GKYHSSVLIKVL------------GEWTENLRDYILSKSESDSQVGPPPPVPPPEGHPPPVHPPQGPVRNLMYEN 241 (658)
Q Consensus 177 ~~---~~~~lsl~IR~~------------G~~T~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (658)
.. +.+.++|+||.. |.+|+.|.+ +..
T Consensus 103 ~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~-l~~-------------------------------------- 143 (314)
T 2rc5_A 103 YSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCD-LKP-------------------------------------- 143 (314)
T ss_dssp TCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHT-CCT--------------------------------------
T ss_pred cccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhc-CCC--------------------------------------
Confidence 52 247899999984 558887754 210
Q ss_pred hhhhhCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcccc
Q 006160 242 LILVAGGISEANPHVGPPLPVPPPQGAPPPGPPLQEEGPPPQGPHPPVPPPQGPPPPLPPPKGNLMYENLIVVAGGISET 321 (658)
Q Consensus 242 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (658)
T Consensus 144 -------------------------------------------------------------------------------- 143 (314)
T 2rc5_A 144 -------------------------------------------------------------------------------- 143 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEEECccCCCccCc--cccceEEEEEcCcchhhhHHHHHHHHHhh
Q 006160 322 EPQVGPPPPVPPPQGSPPQRPPPSRHPLLPPTKITASVEGPYGHEVPYH--LMYENLILVAGGIGISPFLAILSDILHRI 399 (658)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~veGPyG~~~~~~--~~~~~vvlVAGGiGITP~lsil~~ll~~~ 399 (658)
+. +|.|+||||..+... ...+++||||||+||||+++++++++.+.
T Consensus 144 ------------------------------Gd--~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~ 191 (314)
T 2rc5_A 144 ------------------------------GD--EVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK 191 (314)
T ss_dssp ------------------------------TC--EEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTC
T ss_pred ------------------------------cC--EEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhc
Confidence 12 477999999875422 25789999999999999999999997643
Q ss_pred ccCCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEEEcCCCC
Q 006160 400 NEGKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 400 ~~~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iyVT~~~~ 454 (658)
..+ ...+++|+|++|+.+++.+.+++ +++. .+..+++++.++|++..
T Consensus 192 ~~~---~~~~v~l~~g~r~~~d~~~~~el-~~l~----~~~~~~~~~~~~s~~~~ 238 (314)
T 2rc5_A 192 LIK---FTGNITLVYGAPYSDELVMMDYL-KGLE----SKHKNFKLITAISREEK 238 (314)
T ss_dssp SSC---BCSCEEEEEEESSGGGSCSHHHH-HHHH----HHHSSEEEEEEETTTCB
T ss_pred ccC---CCCcEEEEEEeCCHHHHhHHHHH-HHHH----HhCCcEEEEEEECCCCC
Confidence 111 13579999999999988655544 3332 12236889999998743
No 26
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.63 E-value=7.4e-15 Score=149.96 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=59.4
Q ss_pred ceEEEEEEEEecCceEEEEEeCCCC--C-CcCCCcEEEEEeCC-CCCCcceeEEeeeCCCCCCCeEEEEEEEc---CchH
Q 006160 122 RTVDVLSASCLPCGTVELVLSKPAN--L-RYNALSFFFLQVRE-LSWLQWHPFSVSSSPLEGKYHSSVLIKVL---GEWT 194 (658)
Q Consensus 122 ~~~~v~sv~~l~~~v~~l~i~~p~~--~-~~~PGQ~v~L~vp~-is~~q~HPFTIaS~p~~~~~~lsl~IR~~---G~~T 194 (658)
+..+|.+++.++.+++++++..+.. + .++|||||.|.++. .+...+|+||+++.+. ++++|.++.. |..|
T Consensus 9 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~~~G~~S 85 (252)
T 2gpj_A 9 RELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHDTDGPAS 85 (252)
T ss_dssp EEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCSSCCHHH
T ss_pred EEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeCCCCcHH
Confidence 4678999999999999999997642 3 57999999999985 3557899999999864 5777777765 7788
Q ss_pred HHHH
Q 006160 195 ENLR 198 (658)
Q Consensus 195 ~~L~ 198 (658)
+.|.
T Consensus 86 ~~l~ 89 (252)
T 2gpj_A 86 SWAK 89 (252)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7773
No 27
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.50 E-value=2e-14 Score=155.44 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=62.1
Q ss_pred EEEEECcc-CCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160 356 TASVEGPY-GHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veGPy-G~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell 433 (658)
+|.|.||. |.+.......+.++|||||+|||||+++++++..+.. ..++.|+|++|+. +|+.+.+++ ++..
T Consensus 209 ~v~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~------~~~~~L~~G~R~~~~d~ly~~El-~~~~ 281 (374)
T 1ddg_A 209 EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEA------PGKNWLFFGNPHFTEDFLYQVEW-QRYV 281 (374)
T ss_dssp EEEEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC------CSCEEEEEEESCHHHHCTTHHHH-HHHH
T ss_pred EEEEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCC------CCCEEEEEEeCCchhhhhHHHHH-HHHH
Confidence 46678854 4543322356889999999999999999999987542 3579999999997 577555444 3332
Q ss_pred CCccCCCCceEEEEEEcCCCC
Q 006160 434 CPFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~~ 454 (658)
.+...++++..++++.+
T Consensus 282 ----~~~~~~~l~~a~Srd~~ 298 (374)
T 1ddg_A 282 ----KEGVLTRIDLAWSRDQK 298 (374)
T ss_dssp ----HTTSCCEEEEEETTSSS
T ss_pred ----HhCCCcEEEEEEecCCC
Confidence 12334678888888753
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.46 E-value=1.9e-13 Score=148.63 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=79.1
Q ss_pred CeeEEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeecc-CcchhhHHHHHHh
Q 006160 353 TKITASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKK-SNELSLLSNFYKE 431 (658)
Q Consensus 353 ~~~~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~-~~dl~~l~~~l~e 431 (658)
+.+.+.|+||+|.+.......+.++|||||+|||||++++++.....+.+. ...++.|+|++|+ .+|+.+.+++ ++
T Consensus 220 d~v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~--~~~~v~L~~G~R~~~~d~ly~~el-~~ 296 (393)
T 4dql_A 220 DTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQ--SLGEAHLYFGCRSPHEDYLYQEEL-EN 296 (393)
T ss_dssp CEEEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTCCTTHHHH-HH
T ss_pred CEEEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCC--CCCCEEEEEEECCcchhhHHHHHH-HH
Confidence 456788999999865443456789999999999999999998643322221 2467999999999 4677555444 33
Q ss_pred ccCCccCCCCceEEEEEEcCCCCCC-CCccccc---ccccccccCCCCCCceeEeecCCCc
Q 006160 432 SICPFFSDKLNLETFIYVTRETEPP-LEEGELH---KTMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 432 ll~~~~~~~~~l~I~iyVT~~~~~~-~~~~~~~---~~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.. +...+++++.++++++.. ....+.. ...+.... .+.....+|||...
T Consensus 297 ~~-----~~~~l~l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l---~~~~~vYvCGp~~~ 349 (393)
T 4dql_A 297 AQ-----SEGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELL---DQGAHFYICGDGSQ 349 (393)
T ss_dssp HH-----HTTSCEEEEEESSCTTSCCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEETTT
T ss_pred HH-----hCCCeEEEEEEeCCCCCCCcchhhHHHhCHHHHHHHH---hCCcEEEEECCchh
Confidence 32 234678888898854321 1111110 00111111 13567889999765
No 29
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.36 E-value=4.2e-12 Score=139.76 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=62.0
Q ss_pred EEEEEC-ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhcc
Q 006160 356 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veG-PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell 433 (658)
+|.|.| |.|.+.......+.+||||||+|||||++++++++.+.+.. .....++.|+|++|+.+ |+.+.++ +++..
T Consensus 261 ~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~E-l~~~~ 338 (435)
T 1f20_A 261 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIYREE-TLQAK 338 (435)
T ss_dssp EEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSCTTHHH-HHHHH
T ss_pred EEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccchhHHHH-HHHHH
Confidence 477888 56665433234678999999999999999999987743110 01246899999999997 5545443 33332
Q ss_pred CCccCCCCceEEEEEEcCCC
Q 006160 434 CPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~ 453 (658)
.....+++++.++++.
T Consensus 339 ----~~~~~~~l~~a~Sr~~ 354 (435)
T 1f20_A 339 ----NKGVFRELYTAYSREP 354 (435)
T ss_dssp ----HTTSEEEEEEEESSCT
T ss_pred ----HcCCccEEEEEECCCC
Confidence 1233457777888764
No 30
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.28 E-value=2.6e-11 Score=140.59 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=62.2
Q ss_pred EEEEEC-ccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCc-chhhHHHHHHhcc
Q 006160 356 TASVEG-PYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSN-ELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veG-PyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~-dl~~l~~~l~ell 433 (658)
+|.|.| |.|.+.......+.+||||||+|||||++++++++...+.. .....++.|+|++|+.+ |+.+.+++ +++.
T Consensus 482 ~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~v~L~~G~R~~~~D~ly~dEL-~~~~ 559 (688)
T 1tll_A 482 VVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIYREET-LQAK 559 (688)
T ss_dssp EEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHS-CCCCCCEEEEEEESCTTTTCTTHHHH-HHHH
T ss_pred EEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhc-cCCCCCEEEEEEeccchhhhhHHHHH-HHHH
Confidence 467888 55565432234678999999999999999999988753211 01246899999999997 66554443 3332
Q ss_pred CCccCCCCceEEEEEEcCCC
Q 006160 434 CPFFSDKLNLETFIYVTRET 453 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~ 453 (658)
.....+++++.++++.
T Consensus 560 ----~~~~~~~l~~a~Sr~~ 575 (688)
T 1tll_A 560 ----NKGVFRELYTAYSREP 575 (688)
T ss_dssp ----HTTSEEEEEEEESSCT
T ss_pred ----HcCCceEEEEEECCCC
Confidence 1233467888888764
No 31
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.25 E-value=4.1e-11 Score=135.15 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=65.2
Q ss_pred EEEEECccCCCcc-CccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhcc
Q 006160 356 TASVEGPYGHEVP-YHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESI 433 (658)
Q Consensus 356 ~v~veGPyG~~~~-~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell 433 (658)
+|.|.||+|+.+. .......+||||||+|||||++++++.....+.+......++.|+|++|+. +|+.+.+++. +..
T Consensus 360 ~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~-~~~ 438 (539)
T 2qtl_A 360 KISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELR-HFL 438 (539)
T ss_dssp EEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHH-HHH
T ss_pred EEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHH-HHH
Confidence 6889999984433 223457899999999999999999997543322111124689999999999 6876655543 332
Q ss_pred CCccCCCCceEEEEEEcCCCC
Q 006160 434 CPFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 434 ~~~~~~~~~l~I~iyVT~~~~ 454 (658)
.....+++++.++|+..
T Consensus 439 ----~~g~~~~l~~afSRd~~ 455 (539)
T 2qtl_A 439 ----KHGILTHLKVSFSRDAP 455 (539)
T ss_dssp ----HTTSSCEEEEEESSSCC
T ss_pred ----HhCCCcEEEEEEccCCC
Confidence 12334688888898754
No 32
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.17 E-value=4.1e-11 Score=132.59 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=75.2
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~ 434 (658)
+|.|.||+|.+.........++|||||+|||||++++++.....+.+. ...++.|+|++|+. +|+.+.+++ +++.
T Consensus 289 ~v~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~--~~~~~~Lf~G~R~~~~D~ly~dEl-~~l~- 364 (458)
T 3qfs_A 289 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLYREEL-AQFH- 364 (458)
T ss_dssp EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTC--CCCCEEEEEEESCTTTSCTTHHHH-HHHH-
T ss_pred EEEEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEEeCCchHhhhHHHHH-HHHH-
Confidence 577899999764333346799999999999999999998643221111 23579999999996 677665544 3322
Q ss_pred CccCCCCceEEEEEEcCCCCCCCCcccccc---cccccccCCCCCCceeEeecCCCc
Q 006160 435 PFFSDKLNLETFIYVTRETEPPLEEGELHK---TMSSSIYPVPSGCAMSVLVGTGNN 488 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~~~~~~~~~~~~---~~v~~~~P~~~d~~~~~v~Gp~~~ 488 (658)
.+....++++.++++............ ..+.++. .+.....+|||...
T Consensus 365 ---~~g~l~~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l---~~~~~vYvCGp~~~ 415 (458)
T 3qfs_A 365 ---RDGALTQLNVAFSREQSHKVYVQHLLKQDREHLWKLI---EGGAHIYVCGDARN 415 (458)
T ss_dssp ---HHTSSSEEEEEETTSSSSCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEETTT
T ss_pred ---HcCCCCEEEEEEECCCCCcccHhHHHHHhHHHHHHHh---cCCCEEEEECCCHH
Confidence 112223788888887532111111000 0111111 14567889999755
No 33
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.15 E-value=2.1e-11 Score=141.23 Aligned_cols=77 Identities=12% Similarity=0.273 Sum_probs=53.7
Q ss_pred cceEEEEEcCcchhhhHHHHHHHHHhhcc----CCCCCCceEEEEEeeccCcchhhHHHHHHhccCCccCCCCceEEEEE
Q 006160 373 YENLILVAGGIGISPFLAILSDILHRINE----GKSCLPRNVLIVWAVKKSNELSLLSNFYKESICPFFSDKLNLETFIY 448 (658)
Q Consensus 373 ~~~vvlVAGGiGITP~lsil~~ll~~~~~----~~~~~~~kV~liW~vR~~~dl~~l~~~l~ell~~~~~~~~~l~I~iy 448 (658)
...+||||||+|||||++++++++.+... .......++.|+|++|+.+|+.+.+++. +... .....+++++.
T Consensus 524 ~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~-~~~~---~~g~~~~l~~a 599 (682)
T 2bpo_A 524 STPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWP-EYAK---KLDGSFEMVVA 599 (682)
T ss_dssp TSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHH-HHHH---HHGGGEEEEEE
T ss_pred CCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHH-HHHH---hcCCceEEEEE
Confidence 57899999999999999999999876530 0111246899999999998885544332 2210 11235788888
Q ss_pred EcCCC
Q 006160 449 VTRET 453 (658)
Q Consensus 449 VT~~~ 453 (658)
++|++
T Consensus 600 fSr~d 604 (682)
T 2bpo_A 600 HSRLP 604 (682)
T ss_dssp ESCCT
T ss_pred ECCCC
Confidence 89854
No 34
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.11 E-value=7.9e-11 Score=135.01 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=64.9
Q ss_pred EEEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccC-cchhhHHHHHHhccC
Q 006160 356 TASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKS-NELSLLSNFYKESIC 434 (658)
Q Consensus 356 ~v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~-~dl~~l~~~l~ell~ 434 (658)
+|.|.||+|++.........++|||||+|||||++++++.+...+.+. ...++.|+|++|+. +|+.+.+++ ++..
T Consensus 449 ~v~v~~p~g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~--~~~~~~L~~G~R~~~~D~ly~~el-~~~~- 524 (618)
T 3qe2_A 449 LVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK--EVGETLLYYGCRRSDEDYLYREEL-AQFH- 524 (618)
T ss_dssp EEEEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC--CCCCEEEEEEESCTTTSCTTHHHH-HHHH-
T ss_pred EEEEEEecCcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC--CCCCEEEEEecCCCccccchHHHH-HHHH-
Confidence 577889999764333346789999999999999999999876433221 24679999999998 477655544 3322
Q ss_pred CccCCCCceEEEEEEcCCCC
Q 006160 435 PFFSDKLNLETFIYVTRETE 454 (658)
Q Consensus 435 ~~~~~~~~l~I~iyVT~~~~ 454 (658)
.+....++++..+|+..
T Consensus 525 ---~~g~l~~l~~a~Srd~~ 541 (618)
T 3qe2_A 525 ---RDGALTQLNVAFSREQS 541 (618)
T ss_dssp ---HHTSSSEEEEEETTSSS
T ss_pred ---hcCCCcEEEEEEcCCCC
Confidence 11222388888888754
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.05 E-value=6.5e-11 Score=110.72 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=49.7
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHH
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNF 428 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~ 428 (658)
+.|+||||+++.. ...++++|||||+||||++++++++.++. .+++++ ++|+.+++.+.+++
T Consensus 3 ~~v~GP~G~~~~~-~~~~~~llIaGG~GiaPl~sm~~~l~~~~--------~~v~l~-g~R~~~~~~~~~el 64 (142)
T 3lyu_A 3 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEEL 64 (142)
T ss_dssp ----CCCSCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHTT--------CEEEEE-EEEEGGGCCSHHHH
T ss_pred eeeeCCCCCCccC-CCCCeEEEEECcCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHH
Confidence 4689999998764 45789999999999999999999997643 379999 99999999776655
No 36
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=98.80 E-value=5.3e-09 Score=99.35 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=50.1
Q ss_pred EEEECccCCCccCccccceEEEEEcCcchhhhHHHHHHHHHhhccCCCCCCceEEEEEeeccCcchhhHHHHH
Q 006160 357 ASVEGPYGHEVPYHLMYENLILVAGGIGISPFLAILSDILHRINEGKSCLPRNVLIVWAVKKSNELSLLSNFY 429 (658)
Q Consensus 357 v~veGPyG~~~~~~~~~~~vvlVAGGiGITP~lsil~~ll~~~~~~~~~~~~kV~liW~vR~~~dl~~l~~~l 429 (658)
+.|+||||+++.. ...++++|||||+||||++++++++.++. ++|+|+ ++|+.+++.+.+++.
T Consensus 8 l~v~gP~G~~f~~-~~~~~~llIaGG~GItPl~sm~~~l~~~~--------~~v~l~-g~r~~~d~~~~~el~ 70 (158)
T 3lrx_A 8 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEELE 70 (158)
T ss_dssp ----CCCCCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHHT--------CEEEEE-EECBGGGCCSHHHHH
T ss_pred eEEECCCCCCCcc-CCCCeEEEEEccCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHHH
Confidence 4799999997654 35789999999999999999999997643 379999 999999998776653
No 37
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=80.92 E-value=0.97 Score=41.29 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEEeCChhhHHHHHHHHHhcccC
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHSLM 641 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~~~ 641 (658)
-|++|||+.|.+.|++.+++....
T Consensus 110 ~vy~CGP~~Mm~av~~~l~~~~~~ 133 (142)
T 3lyu_A 110 LVFMVGPVGDQKQVFEVVKEYGVP 133 (142)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCc
Confidence 599999999999999999987653
No 38
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=78.88 E-value=1.1 Score=46.60 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=26.5
Q ss_pred eEEEEEeCChhhHHHHHHHHHhcccCCCCCCceEEEEecccC
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSHSLMRECHDPIFHFHSHSFD 657 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~~~~~~~~~~~~~fhsesF~ 657 (658)
+..|++|||+.|.++|++.+++... ... ++|.|.|.
T Consensus 301 ~~~vy~CGp~~m~~~v~~~l~~~G~---~~~---~i~~e~F~ 336 (338)
T 1krh_A 301 EVDVYLCGPVPMVEAVRSWLDTQGI---QPA---NFLFEKFS 336 (338)
T ss_dssp CSEEEEEEEHHHHHHHHHHHHHHTC---CCS---EEEEEEEC
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC---CHH---HEEEEeec
Confidence 3469999999999999999977433 222 56666674
No 39
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=77.96 E-value=1.5 Score=40.65 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.6
Q ss_pred EEEEeCChhhHHHHHHHHHhcc
Q 006160 618 GVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 618 gV~~CGP~~m~~~V~~~~~~~~ 639 (658)
-|++|||+.|.++|++.+.+..
T Consensus 115 ~vy~CGP~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 115 LVFMVGPVGDQKQVFEVVKEYG 136 (158)
T ss_dssp EEEEESCHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 6999999999999999988754
No 40
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=73.40 E-value=2.1 Score=43.93 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=20.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHHhcc
Q 006160 615 VDVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 615 ~~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
+...|++|||+.|.++|++.+.+..
T Consensus 261 ~~~~vyvCGp~~M~~~v~~~L~~~~ 285 (310)
T 3vo2_A 261 DNTYVYMCGLKGMEKGIDDIMLNLA 285 (310)
T ss_dssp TTEEEEEEESTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHH
Confidence 4689999999999999988876543
No 41
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=70.83 E-value=1.5 Score=44.83 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=26.7
Q ss_pred CCCCHHHHHHhhhcc---CCCceEEEEEeCChhhHHHHHHHHHhcc
Q 006160 597 SRPDFKEIFGSTSKK---WGHVDVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 597 gRPd~~~i~~~~~~~---~~~~~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
+|....+.+.+.... .-.+...|++|||+.|.++|++.+.+..
T Consensus 241 ~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~ 286 (311)
T 3lo8_A 241 GKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVA 286 (311)
T ss_dssp --CCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred CcceehHHHHHHHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHHHH
Confidence 455566666553210 0013468999999999999988776654
No 42
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=69.61 E-value=3.2 Score=40.58 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCCCHHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHhcc
Q 006160 597 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 597 gRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~~~ 639 (658)
||.+.. ++++.... ..++..|++|||+.|.++|++.+++..
T Consensus 194 g~v~~~-~l~~~~~~-~~~~~~vy~CGp~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 194 GFVSAD-MIKQHFSP-PSSDIKVMMCGPPMMNKAMQGHLETLG 234 (243)
T ss_dssp SSCCHH-HHHHHSCC-TTSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CccCHH-HHHHhcCC-CCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 666532 34433221 124568999999999999999998644
No 43
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=66.51 E-value=3.7 Score=41.75 Aligned_cols=41 Identities=12% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCCHHHHHHhhhc----cCCCceEEEEEeCChhhHHHHHHHHHh
Q 006160 597 SRPDFKEIFGSTSK----KWGHVDVGVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 597 gRPd~~~i~~~~~~----~~~~~~VgV~~CGP~~m~~~V~~~~~~ 637 (658)
+|-.....+.+... .-....-.|++|||+.|.++|++.+..
T Consensus 233 ~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~ 277 (304)
T 2bmw_A 233 GRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSA 277 (304)
T ss_dssp SBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHH
T ss_pred CcceehHHHHHhHHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 45556665554211 011234579999999999988776654
No 44
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=62.33 E-value=5.8 Score=40.58 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.8
Q ss_pred eEEEEEeCChhhHHHHHHHHHhc
Q 006160 616 DVGVIVCGPPSLQSSVAKEIRSH 638 (658)
Q Consensus 616 ~VgV~~CGP~~m~~~V~~~~~~~ 638 (658)
.-.|++|||+.|.++|++.+.+.
T Consensus 266 ~~~vyvCGp~~m~~~v~~~L~~~ 288 (314)
T 1fnb_A 266 NTYVYMCGLKGMEKGIDDIMVSL 288 (314)
T ss_dssp TEEEEEEECTTHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 46799999999999988766553
No 45
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=59.46 E-value=2.2 Score=45.26 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=10.3
Q ss_pred cCCCCCHHHHHHhh
Q 006160 595 YGSRPDFKEIFGST 608 (658)
Q Consensus 595 ~ggRPd~~~i~~~~ 608 (658)
-..||+.+++++.-
T Consensus 310 P~~Rpt~~eil~hp 323 (400)
T 1nxk_A 310 PTQRMTITEFMNHP 323 (400)
T ss_dssp GGGSCCHHHHHHSH
T ss_pred hhHCcCHHHHhcCc
Confidence 34789988887654
No 46
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=55.26 E-value=2.8 Score=44.37 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=6.8
Q ss_pred EEEECccCCCc
Q 006160 357 ASVEGPYGHEV 367 (658)
Q Consensus 357 v~veGPyG~~~ 367 (658)
+.=+|-||...
T Consensus 69 ~LG~G~~g~V~ 79 (400)
T 1nxk_A 69 VLGLGINGKVL 79 (400)
T ss_dssp EEEEETTEEEE
T ss_pred eeeeccCeEEE
Confidence 34468888654
No 47
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=52.86 E-value=5.6 Score=39.59 Aligned_cols=24 Identities=21% Similarity=0.556 Sum_probs=19.8
Q ss_pred eEEEEEeCChhhHH-HHHHHHHhcc
Q 006160 616 DVGVIVCGPPSLQS-SVAKEIRSHS 639 (658)
Q Consensus 616 ~VgV~~CGP~~m~~-~V~~~~~~~~ 639 (658)
...|++|||+.|.+ +|++.+.+..
T Consensus 242 ~~~vyvCGp~~m~~~~v~~~L~~~G 266 (275)
T 1umk_A 242 EPLVLMCGPPPMIQYACLPNLDHVG 266 (275)
T ss_dssp CCEEEEESCHHHHHHTTHHHHHHHT
T ss_pred CeEEEEECCHHHHHHHHHHHHHHcC
Confidence 45799999999999 8888887633
No 48
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=47.37 E-value=13 Score=36.86 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=23.3
Q ss_pred HHHHHHhhhccCCCceEEEEEeCChhhHHHHHHHHHh
Q 006160 601 FKEIFGSTSKKWGHVDVGVIVCGPPSLQSSVAKEIRS 637 (658)
Q Consensus 601 ~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~V~~~~~~ 637 (658)
+.+++++.... .-.|++|||+.|.++|++ +++
T Consensus 180 v~~~l~~~~~~----~~~vyvCGp~~m~~~v~~-l~~ 211 (262)
T 1ep3_B 180 VGMLMNEIDFE----VDALYTCGAPAMLKAVAK-KYD 211 (262)
T ss_dssp HHHHHHHCCSC----CSEEEEESCHHHHHHHHH-HTT
T ss_pred hHHHHHhhccC----CCEEEEECCHHHHHHHHH-HHh
Confidence 55666654221 236999999999999999 765
No 49
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=43.45 E-value=16 Score=23.46 Aligned_cols=18 Identities=50% Similarity=0.855 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCccch
Q 006160 292 PQGPPPPLPPPKGNLMYE 309 (658)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (658)
|+-|+|++|+.-.|++.+
T Consensus 3 PG~P~P~LPpRPaNLG~~ 20 (26)
T 1wa7_B 3 PGMPTPPLPPRPANLGER 20 (26)
T ss_dssp CCCCCCCCCCCTTSTTTS
T ss_pred CCCCCCCCCCCccccccc
Confidence 455566677666776543
No 50
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=41.29 E-value=19 Score=37.41 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=22.4
Q ss_pred ceEEEEEcCcc--hhhhHHHHHHHHHhh
Q 006160 374 ENLILVAGGIG--ISPFLAILSDILHRI 399 (658)
Q Consensus 374 ~~vvlVAGGiG--ITP~lsil~~ll~~~ 399 (658)
+++++.||||| |.|.+++.++|.+++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 57899999997 899999999997643
No 51
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=35.80 E-value=19 Score=36.59 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=18.2
Q ss_pred EEEe-CChhhHHHHHHHHHhcc
Q 006160 619 VIVC-GPPSLQSSVAKEIRSHS 639 (658)
Q Consensus 619 V~~C-GP~~m~~~V~~~~~~~~ 639 (658)
+++| ||+.|.++|++.+.+..
T Consensus 269 ~yvCGGp~~m~~~v~~~L~~~g 290 (314)
T 2rc5_A 269 FYICGGPKGMEKGVIEEIQKIS 290 (314)
T ss_dssp EEEEESSTTTHHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHHH
Confidence 4999 99999999999887743
No 52
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=29.00 E-value=26 Score=34.49 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=24.4
Q ss_pred CCCCHHHHHHhhhccCCCceEEEEEeCChhhHHH-HHHHHHh
Q 006160 597 SRPDFKEIFGSTSKKWGHVDVGVIVCGPPSLQSS-VAKEIRS 637 (658)
Q Consensus 597 gRPd~~~i~~~~~~~~~~~~VgV~~CGP~~m~~~-V~~~~~~ 637 (658)
||.+-. ++++.... ..+...|++|||+.|.++ +++.+.+
T Consensus 219 g~v~~~-~l~~~l~~-~~~~~~vyvCGp~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 219 GFVTEA-VLREHVPE-GGDDTLALACGPPPMIQFAISPNLEK 258 (270)
T ss_dssp SSCCHH-HHHHHSCC-CSSSEEEEEECCHHHHHTTTHHHHHT
T ss_pred ccCCHH-HHHHhcCC-CcCCEEEEEECCHHHHHHHHHHHHHH
Confidence 666533 34443222 123467999999999997 5767665
No 53
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=27.81 E-value=25 Score=37.15 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=27.0
Q ss_pred EEEEEEEEecC-----ceEEEEEeCC-CCCCcCCCcEEEEEeC
Q 006160 124 VDVLSASCLPC-----GTVELVLSKP-ANLRYNALSFFFLQVR 160 (658)
Q Consensus 124 ~~v~sv~~l~~-----~v~~l~i~~p-~~~~~~PGQ~v~L~vp 160 (658)
..+++.+.|.. ++..|++... ..+.|+||+++-|.-.
T Consensus 14 a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~ 56 (374)
T 1ddg_A 14 ASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQ 56 (374)
T ss_dssp EEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCC
T ss_pred EEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcC
Confidence 45666666642 4788888864 3589999999998754
No 54
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=22.99 E-value=1.5e+02 Score=31.64 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=11.3
Q ss_pred Ccccccch---hhhhhh
Q 006160 3 QDTMYGWD---ILRWCS 16 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a 16 (658)
.|+.|||- +|+|-|
T Consensus 70 ~dV~~GwliR~~H~~gA 86 (385)
T 3cx5_C 70 RDVHNGYILRYLHANGA 86 (385)
T ss_dssp HTSTTHHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHH
Confidence 47889975 789988
No 55
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=21.86 E-value=1.7e+02 Score=31.03 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.9
Q ss_pred Ccccccch---hhhhhh
Q 006160 3 QDTMYGWD---ILRWCS 16 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a 16 (658)
.|+.|||- +|+|-|
T Consensus 71 ~dV~~GwliR~~H~~gA 87 (379)
T 1pp9_C 71 RDVNYGWIIRYMHANGA 87 (379)
T ss_dssp HHSTTHHHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHH
Confidence 47789975 789977
No 56
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=21.31 E-value=1.8e+02 Score=31.63 Aligned_cols=14 Identities=7% Similarity=0.015 Sum_probs=11.2
Q ss_pred Ccccccch---hhhhhh
Q 006160 3 QDTMYGWD---ILRWCS 16 (658)
Q Consensus 3 ~~~~~~~~---~HRW~a 16 (658)
.|+.|||- +|+|-|
T Consensus 85 rdV~~GwliR~~H~~gA 101 (445)
T 2qjy_A 85 RNVNGGFMLRYLHANGA 101 (445)
T ss_dssp HTSTTHHHHHHHHHHHH
T ss_pred hhCccHHHHHHHHHHHH
Confidence 47889975 789988
Done!