Query 006162
Match_columns 658
No_of_seqs 279 out of 1427
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 19:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 1.5E-57 3.2E-62 475.1 15.9 175 4-178 6-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 1.2E-48 2.5E-53 378.6 16.7 165 7-179 40-206 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 2.4E-48 5.2E-53 355.9 13.0 169 4-175 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 2E-44 4.4E-49 368.0 20.7 175 3-181 49-225 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 1.8E-43 3.9E-48 348.1 20.2 170 4-175 13-182 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 1.6E-43 3.5E-48 342.6 19.3 164 7-173 1-164 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 2.1E-43 4.6E-48 348.4 18.6 170 3-175 15-186 (186)
8 KOG0111 Cyclophilin-type pepti 100.0 3.3E-43 7.3E-48 344.8 10.4 165 4-176 134-298 (298)
9 KOG0881 Cyclophilin type pepti 100.0 4.9E-42 1.1E-46 311.2 8.8 153 5-174 8-162 (164)
10 cd01923 cyclophilin_RING cyclo 100.0 6.4E-40 1.4E-44 316.1 18.2 156 8-180 1-158 (159)
11 COG0652 PpiB Peptidyl-prolyl c 100.0 8.9E-40 1.9E-44 313.2 15.9 147 9-174 2-156 (158)
12 cd01928 Cyclophilin_PPIL3_like 100.0 6.2E-39 1.3E-43 307.5 17.4 149 8-173 2-152 (153)
13 cd01921 cyclophilin_RRM cyclop 100.0 7.3E-39 1.6E-43 310.7 17.6 154 11-181 2-165 (166)
14 cd01927 cyclophilin_WD40 cyclo 100.0 1.2E-38 2.6E-43 303.9 16.9 144 11-171 2-147 (148)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 1.8E-38 4E-43 302.0 16.7 144 11-171 2-146 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 3.5E-39 7.6E-44 336.7 12.0 163 4-183 275-439 (518)
17 cd01925 cyclophilin_CeCYP16-li 100.0 1.9E-37 4.1E-42 302.3 18.7 160 5-181 4-166 (171)
18 KOG0885 Peptidyl-prolyl cis-tr 100.0 7.2E-38 1.6E-42 326.2 12.7 161 5-182 11-174 (439)
19 KOG0884 Similar to cyclophilin 100.0 1.9E-37 4.2E-42 279.9 11.6 155 8-179 2-159 (161)
20 PRK10903 peptidyl-prolyl cis-t 100.0 1.7E-36 3.6E-41 300.3 18.2 153 4-175 26-189 (190)
21 KOG0865 Cyclophilin type pepti 100.0 2.1E-37 4.6E-42 299.0 10.1 163 5-175 2-167 (167)
22 PRK10791 peptidyl-prolyl cis-t 100.0 5.7E-36 1.2E-40 290.2 17.8 147 9-174 2-162 (164)
23 KOG0882 Cyclophilin-related pe 100.0 7.8E-37 1.7E-41 324.6 12.2 150 8-174 406-557 (558)
24 cd01920 cyclophilin_EcCYP_like 100.0 2.8E-35 6.2E-40 282.7 16.0 142 11-171 2-154 (155)
25 PF00160 Pro_isomerase: Cyclop 100.0 1.2E-34 2.7E-39 276.2 17.6 151 10-174 1-155 (155)
26 KOG0415 Predicted peptidyl pro 100.0 1E-34 2.2E-39 300.4 13.3 158 8-182 2-169 (479)
27 cd00317 cyclophilin cyclophili 100.0 5.6E-34 1.2E-38 269.3 16.6 144 10-171 1-146 (146)
28 cd01924 cyclophilin_TLP40_like 100.0 5.9E-33 1.3E-37 272.0 14.4 126 19-155 5-164 (176)
29 KOG0882 Cyclophilin-related pe 98.1 4E-06 8.6E-11 91.5 5.3 147 17-175 108-262 (558)
30 TIGR03268 methan_mark_3 putati 97.0 0.0022 4.8E-08 71.7 8.9 113 22-155 376-495 (503)
31 PF12903 DUF3830: Protein of u 96.9 0.0029 6.2E-08 60.9 7.3 115 12-155 2-130 (147)
32 PRK00969 hypothetical protein; 96.7 0.0052 1.1E-07 69.1 8.9 113 22-155 379-497 (508)
33 PRK00969 hypothetical protein; 96.4 0.0083 1.8E-07 67.4 8.1 104 20-155 203-306 (508)
34 TIGR03268 methan_mark_3 putati 96.4 0.0091 2E-07 67.0 8.4 104 20-155 200-303 (503)
35 COG4070 Predicted peptidyl-pro 96.1 0.015 3.2E-07 63.3 7.5 114 22-155 377-498 (512)
36 COG4070 Predicted peptidyl-pro 96.0 0.017 3.8E-07 62.9 7.5 106 18-155 200-305 (512)
37 PF04126 Cyclophil_like: Cyclo 94.5 0.13 2.8E-06 48.0 7.2 103 11-155 3-113 (120)
38 KOG2985 Uncharacterized conser 93.8 0.058 1.3E-06 55.8 3.7 9 217-225 180-188 (306)
39 KOG3116 Predicted C3H1-type Zn 92.2 0.34 7.4E-06 46.6 6.0 11 302-312 142-152 (177)
40 PHA03001 putative virion core 78.4 5.9 0.00013 37.5 6.2 51 8-71 5-61 (132)
41 KOG0526 Nucleosome-binding fac 77.5 24 0.00051 40.8 11.6 16 1-16 247-262 (615)
42 KOG2812 Uncharacterized conser 76.0 1.2 2.7E-05 48.3 1.2 7 206-212 197-203 (426)
43 PF06138 Chordopox_E11: Chordo 69.6 13 0.00027 35.3 6.0 50 8-70 5-61 (130)
44 KOG3794 CBF1-interacting corep 66.3 1.4 3E-05 48.6 -1.1 17 30-46 94-110 (453)
45 KOG0260 RNA polymerase II, lar 64.9 96 0.0021 39.3 13.5 9 136-144 1222-1230(1605)
46 COG2164 Uncharacterized conser 61.6 13 0.00027 34.2 4.2 33 123-155 79-117 (126)
47 KOG2985 Uncharacterized conser 57.0 5.8 0.00012 41.5 1.5 8 124-131 100-107 (306)
48 KOG0260 RNA polymerase II, lar 56.7 3.5E+02 0.0075 34.8 16.1 6 146-151 1157-1162(1605)
49 KOG2740 Clathrin-associated pr 51.9 7.4 0.00016 42.8 1.4 145 22-178 66-243 (418)
50 KOG2140 Uncharacterized conser 50.6 9.7 0.00021 43.9 2.1 11 117-127 619-629 (739)
51 KOG1832 HIV-1 Vpr-binding prot 49.8 63 0.0014 39.8 8.5 34 116-149 1274-1321(1516)
52 COG4925 Uncharacterized conser 40.5 1.5E+02 0.0033 28.7 8.0 19 134-152 137-155 (166)
53 KOG3953 SOCS box protein SSB-1 37.3 99 0.0021 32.4 6.8 36 9-44 71-107 (242)
54 COG2927 HolC DNA polymerase II 37.2 75 0.0016 30.9 5.6 36 109-146 75-111 (144)
55 KOG2548 SWAP mRNA splicing reg 35.6 37 0.0008 39.2 3.6 7 37-43 38-44 (653)
56 KOG3064 RNA-binding nuclear pr 34.8 18 0.00039 38.2 1.0 9 121-129 116-124 (303)
57 KOG3869 Uncharacterized conser 33.8 13 0.00028 41.5 -0.2 12 88-99 85-96 (450)
58 KOG2236 Uncharacterized conser 32.3 25 0.00055 39.9 1.7 31 118-150 234-264 (483)
59 PF05913 DUF871: Bacterial pro 30.0 29 0.00062 38.5 1.7 51 104-155 298-349 (357)
60 KOG2138 Predicted RNA binding 25.5 24 0.00051 42.0 0.0 8 136-143 683-690 (883)
61 PF02505 MCR_D: Methyl-coenzym 23.0 7.4E+02 0.016 24.5 10.2 21 23-43 1-23 (153)
62 COG0117 RibD Pyrimidine deamin 22.1 72 0.0016 31.1 2.6 27 109-135 57-83 (146)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-57 Score=475.14 Aligned_cols=175 Identities=67% Similarity=1.117 Sum_probs=170.1
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
..||+|||||+|||+++|+||||||.++||+||+||+.||+|++|.+..+++.++|+|+.|||||++||||||||+.++|
T Consensus 6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG 85 (372)
T KOG0546|consen 6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG 85 (372)
T ss_pred CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence 46999999999999999999999999999999999999999999987889999999999999999999999999999999
Q ss_pred CCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC-CC
Q 006162 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD-GK 162 (658)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~-gk 162 (658)
+||++|||.+|+||||.|+|+.++||+|||.|+||||||||||+.++|||||+|||||+||.|++||..|+++.|++ .+
T Consensus 86 tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~sk 165 (372)
T KOG0546|consen 86 TGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESK 165 (372)
T ss_pred CCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 58
Q ss_pred ccCCeEeceeeecccc
Q 006162 163 PAQPVKIIDCGEFSES 178 (658)
Q Consensus 163 P~~~I~I~~cg~l~~~ 178 (658)
|+.+|.|.+||+|...
T Consensus 166 P~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 166 PLADVVISDCGELVKK 181 (372)
T ss_pred CccceEeccccccccc
Confidence 9999999999998764
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-48 Score=378.58 Aligned_cols=165 Identities=62% Similarity=1.063 Sum_probs=158.2
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhc-CCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCC
Q 006162 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCT-GEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTG 85 (658)
Q Consensus 7 P~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~-g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~g 85 (658)
-+|||||++|++++|+|+|+||++++|+||+||.+||+ +.++.+ |.|+.||||||||||||||++.++++|
T Consensus 40 ~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g--------Y~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 40 HKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG--------YKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred eEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc--------cCCceeeeeecCceeecCccccCCCCC
Confidence 37999999999999999999999999999999999999 665554 999999999999999999999999999
Q ss_pred CccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCcc
Q 006162 86 GESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPA 164 (658)
Q Consensus 86 g~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~ 164 (658)
+.+|||.+|+|||+.|+|+.+|.|+|||.|+|+||+|||||+...+||||+|||||+|++||+||.+|+.+.|+ .++|+
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~ 191 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPL 191 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred CCeEeceeeeccccc
Q 006162 165 QPVKIIDCGEFSESK 179 (658)
Q Consensus 165 ~~I~I~~cg~l~~~~ 179 (658)
++|+|.+||+|....
T Consensus 192 e~v~I~~~g~l~~~~ 206 (217)
T KOG0880|consen 192 EDVVIANCGELPVEY 206 (217)
T ss_pred ccEEEeecCcccccc
Confidence 999999999987654
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=355.90 Aligned_cols=169 Identities=63% Similarity=1.100 Sum_probs=162.0
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
..||+||||++|||.++|+|.||||++++|+|++||.++|+|+.- ..+.+.-|+++.|||||++||||||||.+++|
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r---~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR---KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc---cCCccccccccchHHHhhhheeccCceecCCC
Confidence 469999999999999999999999999999999999999999843 34577789999999999999999999999999
Q ss_pred CCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCC
Q 006162 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGK 162 (658)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gk 162 (658)
+|..+||+.+|+|||+.|+|+.+|+|+|||.|+++||+|||||.....+||++|+|||+|++||.|+.+|+++++. +++
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~Nnk 164 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNK 164 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred ccCCeEeceeeec
Q 006162 163 PAQPVKIIDCGEF 175 (658)
Q Consensus 163 P~~~I~I~~cg~l 175 (658)
|.-+|.|+.||++
T Consensus 165 PKl~v~i~qCGem 177 (177)
T KOG0879|consen 165 PKLPVVIVQCGEM 177 (177)
T ss_pred CCCcEEEeecccC
Confidence 9999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2e-44 Score=367.97 Aligned_cols=175 Identities=38% Similarity=0.574 Sum_probs=160.7
Q ss_pred CCCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecC-ceEEeCCCCCC
Q 006162 3 EKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG-FMIQGGDFSKG 81 (658)
Q Consensus 3 ~~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipg-fvIQgGd~~~~ 81 (658)
...+|+|||||+|||.++|+|+||||.+.||+||+||+.||+|+.+.+..++..++|+|+.||||+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 35689999999999999999999999999999999999999998877666666778999999999985 8999999753
Q ss_pred CCCCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-C
Q 006162 82 NGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-D 160 (658)
Q Consensus 82 ~g~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~ 160 (658)
.+..++|..|.+|++.+.|+.+|+|+||+.|+|+++|||||||.++++||++|||||+||+||+||++|+.++++ +
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~ 204 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV 204 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCccCCeEeceeeeccccccc
Q 006162 161 GKPAQPVKIIDCGEFSESKIQ 181 (658)
Q Consensus 161 gkP~~~I~I~~cg~l~~~~~~ 181 (658)
++|+.+|+|.+||+|+++...
T Consensus 205 grP~~~V~I~~Cgvl~~~~p~ 225 (249)
T PTZ00221 205 GRPLLPVTVSFCGALTGEKPP 225 (249)
T ss_pred CCCCCCeEEEECeEecCCCCC
Confidence 899999999999999987544
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.8e-43 Score=348.15 Aligned_cols=170 Identities=64% Similarity=1.079 Sum_probs=158.4
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
.++|+|||||+++|.++|+|+||||.+.||+||+||+.||+|..... .++.+||+|+.||||+|+|||||||+..+++
T Consensus 13 ~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~--~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g 90 (183)
T PTZ00060 13 SKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS--SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG 90 (183)
T ss_pred CCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc--cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence 36899999999999999999999999999999999999998764321 3467899999999999999999999887778
Q ss_pred CCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCc
Q 006162 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKP 163 (658)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~gkP 163 (658)
.++.++|+..+++|+..+.|+.+|+|+|++.+++++++||||||.++++||++|||||+||+|||||++|+.+++.++.|
T Consensus 91 ~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P 170 (183)
T PTZ00060 91 TGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYP 170 (183)
T ss_pred CCCCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCC
Confidence 88999999999999889999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cCCeEeceeeec
Q 006162 164 AQPVKIIDCGEF 175 (658)
Q Consensus 164 ~~~I~I~~cg~l 175 (658)
+.+|+|++||+|
T Consensus 171 ~~~v~I~~cg~~ 182 (183)
T PTZ00060 171 KKPVVVTDCGEL 182 (183)
T ss_pred cCCeEEEEeEEc
Confidence 999999999987
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.6e-43 Score=342.60 Aligned_cols=164 Identities=71% Similarity=1.233 Sum_probs=153.4
Q ss_pred CeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCC
Q 006162 7 PLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGG 86 (658)
Q Consensus 7 P~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg 86 (658)
|+||||++++|.++|+|+||||.++||+||+||++||.+..+.+. +..||+++.||||+++||||||++..+++.++
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~---~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~ 77 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG---KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGG 77 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc---cccccCCCEEEEEeCCcEEEcCCccCCCCCCC
Confidence 789999999999999999999999999999999999987654321 44589999999999999999999877788888
Q ss_pred ccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccCC
Q 006162 87 ESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQP 166 (658)
Q Consensus 87 ~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~gkP~~~ 166 (658)
.++|+..|++|++.+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|++|||||++|+.+++++++|+.+
T Consensus 78 ~~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~ 157 (164)
T cd01926 78 KSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKK 157 (164)
T ss_pred CcccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEeceee
Q 006162 167 VKIIDCG 173 (658)
Q Consensus 167 I~I~~cg 173 (658)
|+|.+||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999997
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=2.1e-43 Score=348.42 Aligned_cols=170 Identities=61% Similarity=1.030 Sum_probs=155.8
Q ss_pred CCCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCC
Q 006162 3 EKKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGN 82 (658)
Q Consensus 3 ~~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~ 82 (658)
+.+||+|||||++++.++|+|+||||.+.||+||+||+.||+++... .+....|++|.||||+++|||||||+..++
T Consensus 15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~---~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~ 91 (186)
T PLN03149 15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK---AGLPQGYKGCQFHRVIKDFMIQGGDFLKGD 91 (186)
T ss_pred CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc---cCcccccCCcEEEEEcCCcEEEcCCcccCC
Confidence 45689999999999999999999999999999999999999876321 112234999999999999999999988888
Q ss_pred CCCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-C
Q 006162 83 GTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-D 160 (658)
Q Consensus 83 g~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkI~~v~t~-~ 160 (658)
+.++.++|+..|++|++.+.|+.+|+|+|++.+++++++||||||+++++||++|||||+|| +||+||++|+.++++ +
T Consensus 92 g~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~ 171 (186)
T PLN03149 92 GTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPN 171 (186)
T ss_pred CCCcccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCC
Confidence 88999999999999998999999999999999999999999999999999999999999999 799999999999995 7
Q ss_pred CCccCCeEeceeeec
Q 006162 161 GKPAQPVKIIDCGEF 175 (658)
Q Consensus 161 gkP~~~I~I~~cg~l 175 (658)
++|+.+|+|.+||++
T Consensus 172 ~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 172 NRPKLACVISECGEM 186 (186)
T ss_pred CCCcCCeEEEeCEeC
Confidence 899999999999985
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-43 Score=344.76 Aligned_cols=165 Identities=64% Similarity=1.071 Sum_probs=161.3
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
..||.|||++.||+...|+|+++|..++.|+|++||..||+|+.|.| |+|+.||||||.||+|||||++++|
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg--------ykgssfhriip~fmcqggdftn~ng 205 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG--------YKGSSFHRIIPKFMCQGGDFTNGNG 205 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC--------ccccchhhhhhhhhccCCccccCCC
Confidence 46999999999999999999999999999999999999999999887 9999999999999999999999999
Q ss_pred CCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCc
Q 006162 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKP 163 (658)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~gkP 163 (658)
+|+.+|||.+|.||||.|+|..+|+|+|||.|+|+||+|||||+....|||++|+|||.||+||+||.+|+..++..|+|
T Consensus 206 tggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp 285 (298)
T KOG0111|consen 206 TGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKP 285 (298)
T ss_pred CCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEeceeeecc
Q 006162 164 AQPVKIIDCGEFS 176 (658)
Q Consensus 164 ~~~I~I~~cg~l~ 176 (658)
.+.|+|..||+|.
T Consensus 286 ~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 286 QQKVKIVECGEIE 298 (298)
T ss_pred ceEEEEEeccccC
Confidence 9999999999873
No 9
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-42 Score=311.24 Aligned_cols=153 Identities=51% Similarity=0.866 Sum_probs=144.5
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCC
Q 006162 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (658)
Q Consensus 5 ~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~ 84 (658)
.-|.|+|+|++| .|+||||-+.||+||.||.+|+ +.+||+|+.|||||++|||||||+ ++.|.
T Consensus 8 q~~~V~LeTsmG-----~i~~ElY~kHaP~TC~NF~eLa-----------rrgYYn~v~FHRii~DFmiQGGDP-TGTGR 70 (164)
T KOG0881|consen 8 QPPNVTLETSMG-----KITLELYWKHAPRTCQNFAELA-----------RRGYYNGVIFHRIIKDFMIQGGDP-TGTGR 70 (164)
T ss_pred CCCeEEEeeccc-----ceehhhhhhcCcHHHHHHHHHH-----------hcccccceeeeehhhhheeecCCC-CCCCC
Confidence 358999999988 9999999999999999999999 556999999999999999999998 78899
Q ss_pred CCccccCCCccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCC
Q 006162 85 GGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGK 162 (658)
Q Consensus 85 gg~si~g~~~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gk 162 (658)
|+.+|||.+|+|| +..|+|..+|+|+|||.|||+||+||||||++.++|||+||+||+|+.||+||..|..|.|+ .++
T Consensus 71 GGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DR 150 (164)
T KOG0881|consen 71 GGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDR 150 (164)
T ss_pred CccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCC
Confidence 9999999999999 56899999999999999999999999999999999999999999999999999999999998 579
Q ss_pred ccCCeEeceeee
Q 006162 163 PAQPVKIIDCGE 174 (658)
Q Consensus 163 P~~~I~I~~cg~ 174 (658)
|+.+|+|+.+..
T Consensus 151 Pi~~~kIika~~ 162 (164)
T KOG0881|consen 151 PIDEVKIIKAYP 162 (164)
T ss_pred CccceeeEeeec
Confidence 999999998753
No 10
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=6.4e-40 Score=316.09 Aligned_cols=156 Identities=51% Similarity=0.825 Sum_probs=144.1
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~ 87 (658)
+|.|+|+.| +|+||||.++||+||+||++||+. +||+|+.||||+++||||||++. +++.++.
T Consensus 1 ~v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~ 63 (159)
T cd01923 1 YVRLHTNKG-----DLNLELHCDKAPKACENFIKLCKK-----------GYYDGTIFHRSIRNFMIQGGDPT-GTGRGGE 63 (159)
T ss_pred CEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHhc-----------CccCCcEEEEEeCCcEEEecccC-CCCCCCc
Confidence 478888876 999999999999999999999954 48999999999999999999974 6778889
Q ss_pred cccCCCccCCC-CCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccC
Q 006162 88 SIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQ 165 (658)
Q Consensus 88 si~g~~~~dE~-~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~ 165 (658)
++++..|++|. ..+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|++|||||++|+.++++ +++|+.
T Consensus 64 ~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~ 143 (159)
T cd01923 64 SIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKE 143 (159)
T ss_pred cccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCC
Confidence 99999999884 4688999999999999999999999999999999999999999999999999999999986 689999
Q ss_pred CeEeceeeecccccc
Q 006162 166 PVKIIDCGEFSESKI 180 (658)
Q Consensus 166 ~I~I~~cg~l~~~~~ 180 (658)
+|+|.+|+++.++|.
T Consensus 144 ~i~I~~~~i~~dpf~ 158 (159)
T cd01923 144 EIKIEDTSVFVDPFE 158 (159)
T ss_pred CeEEEEeEEEeCCCC
Confidence 999999999999874
No 11
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-40 Score=313.18 Aligned_cols=147 Identities=51% Similarity=0.829 Sum_probs=130.6
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcc
Q 006162 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (658)
Q Consensus 9 V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~s 88 (658)
|.|+|+.| +|+||||+++||+||+||++||. .+||+|+.|||||++|||||||+..+++.+++.
T Consensus 2 v~~~t~~G-----~I~ieL~~~~aP~Tv~NF~~l~~-----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~ 65 (158)
T COG0652 2 VILETNKG-----DITIELYPDKAPKTVANFLQLVK-----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG 65 (158)
T ss_pred ceeeccCC-----CEEEEECCCcCcHHHHHHHHHHH-----------cCCCCCceEEEeecCceeecCCCCCCCCCCCCC
Confidence 55666666 99999999999999999999994 569999999999999999999998777787774
Q ss_pred ccCCCccCCCCCCCCCC--CceEeeccCC-CCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC-----
Q 006162 89 IYGGKFTDENFKLDHNG--PGILSMANSG-ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD----- 160 (658)
Q Consensus 89 i~g~~~~dE~~~l~h~~--~G~LSma~~g-~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~----- 160 (658)
..|++|++.+.|+. +|+|+||+.+ ||+++||||||+.+++|||++|+|||+|++|||||++|+++.+..
T Consensus 66 ---~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~ 142 (158)
T COG0652 66 ---PPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQ 142 (158)
T ss_pred ---CCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCccc
Confidence 78999998888877 9999999999 999999999999999999999999999999999999999988763
Q ss_pred CCccCCeEeceeee
Q 006162 161 GKPAQPVKIIDCGE 174 (658)
Q Consensus 161 gkP~~~I~I~~cg~ 174 (658)
..|..+|+|..+.+
T Consensus 143 ~~~~~~~~i~~~~~ 156 (158)
T COG0652 143 DVPADPVKILSVKI 156 (158)
T ss_pred CCCCCCeEEeeeee
Confidence 34556777776554
No 12
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.2e-39 Score=307.49 Aligned_cols=149 Identities=50% Similarity=0.856 Sum_probs=137.3
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~ 87 (658)
.|.|+|+.| +|+||||+++||+||+||++||+++ ||+|+.||||+++|||||||+. +++.++.
T Consensus 2 ~v~l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~g-----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~ 64 (153)
T cd01928 2 SVTLHTNLG-----DIKIELFCDDCPKACENFLALCASG-----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGE 64 (153)
T ss_pred EEEEEEccc-----cEEEEEcCCCCcHHHHHHHHHHhcC-----------ccCCcEEEEeCCCCEEEccccC-CCCCCCC
Confidence 378888766 9999999999999999999999654 8999999999999999999974 5677888
Q ss_pred cccCCCccCCCC-CCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccC
Q 006162 88 SIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQ 165 (658)
Q Consensus 88 si~g~~~~dE~~-~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~ 165 (658)
.+|+..|++|.. .+.|+.+|+|+||+.+++++++||||+|+++++||++|+|||+|++|||||++|+.++++ +++|+.
T Consensus 65 ~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~ 144 (153)
T cd01928 65 SIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLE 144 (153)
T ss_pred ccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcC
Confidence 899999999975 688989999999999999999999999999999999999999999999999999999986 689999
Q ss_pred CeEeceee
Q 006162 166 PVKIIDCG 173 (658)
Q Consensus 166 ~I~I~~cg 173 (658)
+|+|.+|.
T Consensus 145 ~i~I~~~~ 152 (153)
T cd01928 145 EIRIKDVT 152 (153)
T ss_pred CeEEEEeE
Confidence 99999984
No 13
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=7.3e-39 Score=310.74 Aligned_cols=154 Identities=39% Similarity=0.655 Sum_probs=137.1
Q ss_pred EEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc
Q 006162 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (658)
Q Consensus 11 fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~ 90 (658)
|+|++| +|+||||.++||+||+||++||++ +||+|+.||||+++||||||++. +++.++..++
T Consensus 2 l~Ts~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~ 64 (166)
T cd01921 2 LETTLG-----DLVIDLFTDECPLACLNFLKLCKL-----------KYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIY 64 (166)
T ss_pred cEeccC-----CEEEEEcCCCCCHHHHHHHHHHhc-----------CCcCCCEEEEEeCCceEEECCcC-CCCCCCcccc
Confidence 667666 999999999999999999999965 48999999999999999999984 5566666665
Q ss_pred C-------CCccCCC-CCCCCCCCceEeeccCCCCCCCceEEEEecc-CccCCCCceEEEEEEcCHHHHHHHHhcCCC-C
Q 006162 91 G-------GKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRR-QHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-D 160 (658)
Q Consensus 91 g-------~~~~dE~-~~l~h~~~G~LSma~~g~ns~gSqFFITL~~-~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~ 160 (658)
+ ..|.+|. ..++|+.+|+|+||+.+++++++||||||.+ +++||++|+|||+||+|||||++|+.++++ +
T Consensus 65 ~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~ 144 (166)
T cd01921 65 SQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDD 144 (166)
T ss_pred cccccccCcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCC
Confidence 4 2466664 4789999999999999999999999999985 799999999999999999999999999986 6
Q ss_pred CCccCCeEeceeeeccccccc
Q 006162 161 GKPAQPVKIIDCGEFSESKIQ 181 (658)
Q Consensus 161 gkP~~~I~I~~cg~l~~~~~~ 181 (658)
+.|+.+|+|..|++|.++|.+
T Consensus 145 ~~P~~~i~I~~~~i~~~pf~~ 165 (166)
T cd01921 145 GRPLKDIRIKHTHILDDPFPD 165 (166)
T ss_pred CCCCCCeEEEEEEEECCCCCC
Confidence 899999999999999999864
No 14
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.2e-38 Score=303.88 Aligned_cols=144 Identities=52% Similarity=0.839 Sum_probs=133.0
Q ss_pred EEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc
Q 006162 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (658)
Q Consensus 11 fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~ 90 (658)
|+|+.| +|+||||.++||+||+||++||++ +||+|+.||||+++|||||||+ .+++.++.++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~g~~~~~ 64 (148)
T cd01927 2 IHTTKG-----DIHIRLFPEEAPKTVENFTTHARN-----------GYYNNTIFHRVIKGFMIQTGDP-TGDGTGGESIW 64 (148)
T ss_pred eEeccc-----cEEEEEeCCCCcHHHHHHHHHhhc-----------CCcCCcEEEEEcCCcEEEeccc-CCCCCCCCccc
Confidence 566655 999999999999999999999964 4899999999999999999997 46778888899
Q ss_pred CCCccCCCC-CCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccCCeE
Q 006162 91 GGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVK 168 (658)
Q Consensus 91 g~~~~dE~~-~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~~I~ 168 (658)
+..|++|.. .+.|+.+|+|+||+.++++++|||||||.++++||++|+|||+|++|||||++|+.++++ +++|+.+|+
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~ 144 (148)
T cd01927 65 GKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIK 144 (148)
T ss_pred CCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeE
Confidence 999999965 789999999999999999999999999999999999999999999999999999999986 689999999
Q ss_pred ece
Q 006162 169 IID 171 (658)
Q Consensus 169 I~~ 171 (658)
|..
T Consensus 145 I~~ 147 (148)
T cd01927 145 IIN 147 (148)
T ss_pred EEe
Confidence 975
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.8e-38 Score=302.04 Aligned_cols=144 Identities=51% Similarity=0.890 Sum_probs=132.4
Q ss_pred EEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc
Q 006162 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (658)
Q Consensus 11 fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~ 90 (658)
|+|+.| +|+||||.++||+||+||++||+. +||+++.||||+++||||||++ .+++.++.++|
T Consensus 2 i~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Y~~~~f~Rvi~~f~iq~Gd~-~~~g~~~~~~~ 64 (146)
T cd01922 2 LETTMG-----EITLELYWNHAPKTCKNFYELAKR-----------GYYNGTIFHRLIKDFMIQGGDP-TGTGRGGASIY 64 (146)
T ss_pred eEeccc-----cEEEEEcCCCCcHHHHHHHHHHhc-----------CCcCCcEEEEEcCCcEEEeccc-CCCCCCccccc
Confidence 566655 999999999999999999999954 4899999999999999999997 45677788899
Q ss_pred CCCccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccCCeEe
Q 006162 91 GGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQPVKI 169 (658)
Q Consensus 91 g~~~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~gkP~~~I~I 169 (658)
+..|++| +..++|+.+|+|+|++.+++++++||||||+++++||++|+|||+|++|||||++|+++++++++|+.+|+|
T Consensus 65 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I 144 (146)
T cd01922 65 GKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144 (146)
T ss_pred CCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEE
Confidence 9999998 457899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ce
Q 006162 170 ID 171 (658)
Q Consensus 170 ~~ 171 (658)
..
T Consensus 145 ~~ 146 (146)
T cd01922 145 LK 146 (146)
T ss_pred eC
Confidence 63
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-39 Score=336.71 Aligned_cols=163 Identities=48% Similarity=0.784 Sum_probs=152.3
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
+++-+|-|.|+.| .|.||||++.||.+|+|||.|| +.+||+|++|||.|.||||||||+ ++.|
T Consensus 275 Kkkgyvrl~Tn~G-----~lNlELhcd~~P~aceNFI~lc-----------~~gYYnnt~FHRsIrnFmiQGGDP-TGTG 337 (518)
T KOG0883|consen 275 KKKGYVRLVTNHG-----PLNLELHCDYAPRACENFITLC-----------KNGYYNNTIFHRSIRNFMIQGGDP-TGTG 337 (518)
T ss_pred cccceEEEeccCC-----ceeeEeecCcchHHHHHHHHHH-----------hcccccchHHHHHHHHHeeeCCCC-CCCC
Confidence 4566788888766 9999999999999999999999 456999999999999999999998 7899
Q ss_pred CCCccccCCCccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CC
Q 006162 84 TGGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DG 161 (658)
Q Consensus 84 ~gg~si~g~~~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~g 161 (658)
.||++|+|.+|.|| ...|.|+.+|+|+|||.|+|+||||||||+..+.|||++|||||+||.|++||.+|++|+++ .+
T Consensus 338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D 417 (518)
T KOG0883|consen 338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD 417 (518)
T ss_pred CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence 99999999999999 46799999999999999999999999999999999999999999999999999999999998 47
Q ss_pred CccCCeEeceeeeccccccccc
Q 006162 162 KPAQPVKIIDCGEFSESKIQDG 183 (658)
Q Consensus 162 kP~~~I~I~~cg~l~~~~~~~~ 183 (658)
.|+.+|+|..+-+++++|.+..
T Consensus 418 rP~e~I~i~~~~VFVdPfeEa~ 439 (518)
T KOG0883|consen 418 RPKEEIKIEDAIVFVDPFEEAD 439 (518)
T ss_pred CcccceEEeeeEEeeCcHHHHH
Confidence 8999999999999999986653
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.9e-37 Score=302.34 Aligned_cols=160 Identities=41% Similarity=0.704 Sum_probs=145.7
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCC
Q 006162 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (658)
Q Consensus 5 ~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~ 84 (658)
..-.|+|+|++| +|+||||.++||+||+||+.||+. +||+|+.||||+++||||||++. +++.
T Consensus 4 ~~~~v~i~Ts~G-----~i~ieL~~~~~P~t~~nF~~L~~~-----------~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~ 66 (171)
T cd01925 4 TTGKVILKTTAG-----DIDIELWSKEAPKACRNFIQLCLE-----------GYYDNTIFHRVVPGFIIQGGDPT-GTGT 66 (171)
T ss_pred cccEEEEEEccc-----cEEEEEeCCCChHHHHHHHHHHhc-----------CCCCCCEEEEEcCCcEEEccccC-CCCc
Confidence 446799999877 999999999999999999999954 48999999999999999999974 6778
Q ss_pred CCccccCCCccCCCC-CCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-CC
Q 006162 85 GGESIYGGKFTDENF-KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-DG 161 (658)
Q Consensus 85 gg~si~g~~~~dE~~-~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkI~~v~t~-~g 161 (658)
++.++|+..|.+|.. .+.|+.+|+|+||+.+++++++||||||+++++||++|+|||+|+ ++|++|++|+.++++ ++
T Consensus 67 g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~ 146 (171)
T cd01925 67 GGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDE 146 (171)
T ss_pred cCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCC
Confidence 888999999998865 678999999999999999999999999999999999999999999 468899999999997 68
Q ss_pred CccCCeEeceeeeccccccc
Q 006162 162 KPAQPVKIIDCGEFSESKIQ 181 (658)
Q Consensus 162 kP~~~I~I~~cg~l~~~~~~ 181 (658)
+|+.+|+|.+|+++.+++.+
T Consensus 147 ~P~~~i~I~~~~i~~~pf~~ 166 (171)
T cd01925 147 RPVYPPKITSVEVLENPFDD 166 (171)
T ss_pred CcCCCeEEEEEEEEcCCchh
Confidence 99999999999999988754
No 18
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-38 Score=326.21 Aligned_cols=161 Identities=40% Similarity=0.671 Sum_probs=150.2
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCC
Q 006162 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGT 84 (658)
Q Consensus 5 ~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~ 84 (658)
..-+|.|.|+.| +|.||||+.+||++|.|||+||..+ ||+|+.||||+|+|+||||++ +++|+
T Consensus 11 ttgkvil~TT~G-----~I~iELW~kE~P~acrnFiqKOGeg-----------yy~nt~fhrlvp~f~~Qggdp-~~~gt 73 (439)
T KOG0885|consen 11 TTGKVILKTTKG-----DIDIELWAKECPKACRNFIQLCLEG-----------YYDNTEFHRLVPGFLVQGGDP-TGTGT 73 (439)
T ss_pred ccceEEEEeccC-----ceeeeehhhhhhHHHHHHHHHHHhc-----------cccCceeeeeccchhcccCCC-CCCCC
Confidence 456899999988 9999999999999999999999654 999999999999999999998 78999
Q ss_pred CCccccCCCccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEE-cCHHHHHHHHhcCCC-CC
Q 006162 85 GGESIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVV-KGLNIVKKIEQVGTG-DG 161 (658)
Q Consensus 85 gg~si~g~~~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVI-eGmdVLdkI~~v~t~-~g 161 (658)
||++|||.+|.+| +..|.++.+|+|+||+.+.+.||+||||||+++++|+++|||||+|+ .-++.+-+|..+.++ +.
T Consensus 74 Ggesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~ 153 (439)
T KOG0885|consen 74 GGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADD 153 (439)
T ss_pred CccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhccccccccc
Confidence 9999999999999 56899999999999999999999999999999999999999999999 589999999999998 78
Q ss_pred CccCCeEeceeeecccccccc
Q 006162 162 KPAQPVKIIDCGEFSESKIQD 182 (658)
Q Consensus 162 kP~~~I~I~~cg~l~~~~~~~ 182 (658)
+|+.+.+|+.|.+|..+|.+.
T Consensus 154 Rp~~p~kI~s~EV~~npFdDI 174 (439)
T KOG0885|consen 154 RPVDPPKIKSVEVLINPFDDI 174 (439)
T ss_pred CCCCccceeeeEeecCchhhc
Confidence 999999999999888877653
No 19
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=279.91 Aligned_cols=155 Identities=48% Similarity=0.752 Sum_probs=143.0
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~ 87 (658)
-|.|.|.+| +|.||||.+.+|+||+||+.||. ..||++|+||+-+++||||+|++ +..|.||.
T Consensus 2 svtlht~~g-----dikiev~~e~tpktce~~l~~~~-----------~~~~n~~~~~~~~~~f~v~~~~~-~~tgrgg~ 64 (161)
T KOG0884|consen 2 SVTLHTDVG-----DIKIEVFCERTPKTCENFLALCA-----------SDYYNGCIFHRNIKGFMVQTGDP-THTGRGGN 64 (161)
T ss_pred eEEEeeccC-----cEEEEEEecCChhHHHHHHHHhh-----------hhhccceeecCCCCCcEEEeCCC-CCCCCCCc
Confidence 367777776 99999999999999999999994 44999999999999999999998 67889999
Q ss_pred cccCCCccCCC-CCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCC--CCcc
Q 006162 88 SIYGGKFTDEN-FKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGD--GKPA 164 (658)
Q Consensus 88 si~g~~~~dE~-~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~--gkP~ 164 (658)
+|+|.+|+||. ..|+|+-+|+|+|||.|||+|++|||||.+.++|||-+|||||+||+|+|+|++|+.+++++ .+|+
T Consensus 65 siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl 144 (161)
T KOG0884|consen 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPL 144 (161)
T ss_pred cccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccc
Confidence 99999999995 46999999999999999999999999999999999999999999999999999999999984 6899
Q ss_pred CCeEeceeeeccccc
Q 006162 165 QPVKIIDCGEFSESK 179 (658)
Q Consensus 165 ~~I~I~~cg~l~~~~ 179 (658)
.++.|.++.+...++
T Consensus 145 ~~~~ik~itihanp~ 159 (161)
T KOG0884|consen 145 NDVHIKDITIHANPF 159 (161)
T ss_pred hheeeeeeEEecCcC
Confidence 999999998766654
No 20
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1.7e-36 Score=300.27 Aligned_cols=153 Identities=36% Similarity=0.547 Sum_probs=132.5
Q ss_pred CCCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC
Q 006162 4 KKNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG 83 (658)
Q Consensus 4 ~~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g 83 (658)
..++.|.|+|+.| +|+||||.++||+||+||++||. .+||+|+.||||+++||||||++....+
T Consensus 26 ~~~~~v~l~T~~G-----~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~ 89 (190)
T PRK10903 26 KGDPHVLLTTSAG-----NIELELNSQKAPVSVKNFVDYVN-----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ 89 (190)
T ss_pred CCCcEEEEEeccc-----cEEEEEeCCCCcHHHHHHHHHHh-----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence 3578899999877 99999999999999999999995 4599999999999999999999754321
Q ss_pred CCCccccCCCccCCCCCCCCCCCceEeeccCC-CCCCCceEEEEeccCccCCC-----CceEEEEEEcCHHHHHHHHhcC
Q 006162 84 TGGESIYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVG 157 (658)
Q Consensus 84 ~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g-~ns~gSqFFITL~~~p~LDg-----kytVFGrVIeGmdVLdkI~~v~ 157 (658)
...++..|.+|.....|+.+|+|+||+.+ +|+++|||||||.++++||+ +|||||+|++|||||++|+.++
T Consensus 90 ---~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~ 166 (190)
T PRK10903 90 ---QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 166 (190)
T ss_pred ---CCCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCC
Confidence 22345677788655667789999999865 89999999999999999984 8999999999999999999999
Q ss_pred CCC-----CCccCCeEeceeeec
Q 006162 158 TGD-----GKPAQPVKIIDCGEF 175 (658)
Q Consensus 158 t~~-----gkP~~~I~I~~cg~l 175 (658)
+++ +.|+.+|+|..|+++
T Consensus 167 ~~~~~~~~~~P~~~v~I~~~~v~ 189 (190)
T PRK10903 167 THDVGPYQNVPSKPVVILSAKVL 189 (190)
T ss_pred CCCCCCCCCcccCCeEEEEEEEe
Confidence 864 689999999999765
No 21
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=299.03 Aligned_cols=163 Identities=66% Similarity=1.153 Sum_probs=156.7
Q ss_pred CCCeEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEE---eecCceEEeCCCCCC
Q 006162 5 KNPLVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHR---IIKGFMIQGGDFSKG 81 (658)
Q Consensus 5 ~nP~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~R---VipgfvIQgGd~~~~ 81 (658)
.||.||||++++++++|+++|+||++..|+|++||.+||+|+++.+ |++..||+ ++++||+||||++..
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~--------yk~s~fhr~~~~~~~fm~qggDft~h 73 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG--------YKGSCFHRLIPIIPGFMCQGGDFTCH 73 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc--------cccchhhhccccccceeeccCccccc
Confidence 5899999999999999999999999999999999999999988765 99999999 345799999999999
Q ss_pred CCCCCccccCCCccCCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCC
Q 006162 82 NGTGGESIYGGKFTDENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDG 161 (658)
Q Consensus 82 ~g~gg~si~g~~~~dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~g 161 (658)
+++++.+||+++|.|||+.|+|..+|+|+|||.|+|++++||||+++...|||++|+|||+|++||+||++|+..+..++
T Consensus 74 ngtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~g 153 (167)
T KOG0865|consen 74 NGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNG 153 (167)
T ss_pred CCccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeEeceeeec
Q 006162 162 KPAQPVKIIDCGEF 175 (658)
Q Consensus 162 kP~~~I~I~~cg~l 175 (658)
++...|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999975
No 22
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=5.7e-36 Score=290.16 Aligned_cols=147 Identities=35% Similarity=0.563 Sum_probs=124.8
Q ss_pred EEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcc
Q 006162 9 VFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGES 88 (658)
Q Consensus 9 V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~s 88 (658)
|.|+|+.| +|+||||.++||+||+||+.||+. +||+|+.||||+++||||||++..+.+. .
T Consensus 2 v~~~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~ 62 (164)
T PRK10791 2 VTFHTNHG-----DIVIKTFDDKAPETVKNFLDYCRE-----------GFYNNTIFHRVINGFMIQGGGFEPGMKQ---K 62 (164)
T ss_pred EEEEEccc-----cEEEEEeCCCCcHHHHHHHHHHhc-----------CCcCCcEEEEEecCcEEEeCCcCCCCCc---C
Confidence 67888766 999999999999999999999954 4999999999999999999997544322 2
Q ss_pred ccCCCccCCCCCCCCCCCceEeeccCC-CCCCCceEEEEeccCccCC-------C-CceEEEEEEcCHHHHHHHHhcCCC
Q 006162 89 IYGGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLD-------G-KHVVFGKVVKGLNIVKKIEQVGTG 159 (658)
Q Consensus 89 i~g~~~~dE~~~l~h~~~G~LSma~~g-~ns~gSqFFITL~~~p~LD-------g-kytVFGrVIeGmdVLdkI~~v~t~ 159 (658)
.++..|.+|.....|+.+|+|+||+.+ +++++|||||||.++++|| + +|||||+|++|||||++|+.++++
T Consensus 63 ~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~ 142 (164)
T PRK10791 63 ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATG 142 (164)
T ss_pred CCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCC
Confidence 235567777544444579999999875 8999999999999988776 3 699999999999999999999986
Q ss_pred C-----CCccCCeEeceeee
Q 006162 160 D-----GKPAQPVKIIDCGE 174 (658)
Q Consensus 160 ~-----gkP~~~I~I~~cg~ 174 (658)
. +.|+.+|+|..|.+
T Consensus 143 ~~~~~~~~P~~~v~I~~~~i 162 (164)
T PRK10791 143 RSGMHQDVPKEDVIIESVTV 162 (164)
T ss_pred CCCccCCCcCCCeEEEEEEE
Confidence 4 68999999999965
No 23
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-37 Score=324.64 Aligned_cols=150 Identities=49% Similarity=0.767 Sum_probs=140.9
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~ 87 (658)
-+.|+|+.| +|.|.||+++||+||+||...|. .+||+|..|||||++||||+||+ .++|+||+
T Consensus 406 ~aiihtt~g-----di~~kl~p~ecpktvenf~th~r-----------ngyy~~~~fhriik~fmiqtgdp-~g~gtgge 468 (558)
T KOG0882|consen 406 AAIIHTTQG-----DIHIKLYPEECPKTVENFTTHSR-----------NGYYDNHTFHRIIKGFMIQTGDP-LGDGTGGE 468 (558)
T ss_pred ceEEEeccc-----ceEEEecccccchhhhhhhcccc-----------CccccCcchHHhhhhheeecCCC-CCCCCCCc
Confidence 457777766 99999999999999999999994 45999999999999999999998 68999999
Q ss_pred cccCCCccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccC
Q 006162 88 SIYGGKFTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQ 165 (658)
Q Consensus 88 si~g~~~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~ 165 (658)
+|+|..|+|| ...|.|+.+.+|+|||+|+|+||||||||+-+.|||||+|||||+|+.||+||+.|+++.|+ .++|.+
T Consensus 469 siwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e 548 (558)
T KOG0882|consen 469 SIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYE 548 (558)
T ss_pred ccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCC
Confidence 9999999999 46799999999999999999999999999999999999999999999999999999999998 789999
Q ss_pred CeEeceeee
Q 006162 166 PVKIIDCGE 174 (658)
Q Consensus 166 ~I~I~~cg~ 174 (658)
+|.|+++.+
T Consensus 549 ~v~iinisv 557 (558)
T KOG0882|consen 549 DVKIINISV 557 (558)
T ss_pred ceeEEEEec
Confidence 999999853
No 24
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.8e-35 Score=282.71 Aligned_cols=142 Identities=36% Similarity=0.532 Sum_probs=120.6
Q ss_pred EEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc
Q 006162 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (658)
Q Consensus 11 fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~ 90 (658)
|+|++| +|+||||.++||+||+||++||.. +||+|+.||||+++||||||++....+. ..+
T Consensus 2 l~T~~G-----~i~ieL~~~~aP~t~~nF~~L~~~-----------g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~ 62 (155)
T cd01920 2 FQTSLG-----DIVVELYDDKAPITVENFLAYVRK-----------GFYDNTIFHRVISGFVIQGGGFTPDLAQ---KET 62 (155)
T ss_pred cEecce-----eEEEEEeCCCCcHHHHHHHHHHhc-----------CCCCCCEEEEEeCCcEEEeCCCCCCCCc---ccc
Confidence 556555 999999999999999999999953 4999999999999999999998644322 234
Q ss_pred CCCccCCCCCCCCCCCceEeeccCC-CCCCCceEEEEeccCccCCC-----CceEEEEEEcCHHHHHHHHhcCCCC----
Q 006162 91 GGKFTDENFKLDHNGPGILSMANSG-ANTNGSQFFITFRRQHHLDG-----KHVVFGKVVKGLNIVKKIEQVGTGD---- 160 (658)
Q Consensus 91 g~~~~dE~~~l~h~~~G~LSma~~g-~ns~gSqFFITL~~~p~LDg-----kytVFGrVIeGmdVLdkI~~v~t~~---- 160 (658)
+..|.+|.....|+.+|+|+||+.+ +++++|||||+|+++++||+ +|||||+|++|||||++|+.+++++
T Consensus 63 ~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~ 142 (155)
T cd01920 63 LKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSY 142 (155)
T ss_pred CCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCc
Confidence 5567777665567789999999865 89999999999999999995 7999999999999999999999975
Q ss_pred -CCccCCeEece
Q 006162 161 -GKPAQPVKIID 171 (658)
Q Consensus 161 -gkP~~~I~I~~ 171 (658)
+.|+.+|+|..
T Consensus 143 ~~~p~~~v~i~~ 154 (155)
T cd01920 143 QDVPVQDVIIES 154 (155)
T ss_pred CCCcCCCeEEEE
Confidence 47888888764
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.2e-34 Score=276.18 Aligned_cols=151 Identities=50% Similarity=0.825 Sum_probs=130.0
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc-c
Q 006162 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE-S 88 (658)
Q Consensus 10 ~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~-s 88 (658)
||+|++++ +|+|+||||.++||++|+||++||+.+ +|+|+.||+|+++++||||++......+.. .
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~-----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~ 67 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG-----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDS 67 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT-----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEB
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc-----------ccCCceeecccccceeeeeeccCCCCcccccc
Confidence 78888866 899999999999999999999999744 899999999999999999998654432111 2
Q ss_pred ccCCCccCCCC-CCCCCCCceEeeccCC--CCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCCCCCccC
Q 006162 89 IYGGKFTDENF-KLDHNGPGILSMANSG--ANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTGDGKPAQ 165 (658)
Q Consensus 89 i~g~~~~dE~~-~l~h~~~G~LSma~~g--~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~~gkP~~ 165 (658)
..+..+++|.. .+.++.+|+|+|++.+ ++++++||||+|.++++||++|+|||+|++||+||++|+.+++++ +|.+
T Consensus 68 ~~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~ 146 (155)
T PF00160_consen 68 TGGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ 146 (155)
T ss_dssp TTBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred cCccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence 23446778863 3344479999999876 788999999999999999999999999999999999999999988 9999
Q ss_pred CeEeceeee
Q 006162 166 PVKIIDCGE 174 (658)
Q Consensus 166 ~I~I~~cg~ 174 (658)
+|+|.+|++
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999985
No 26
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=300.45 Aligned_cols=158 Identities=38% Similarity=0.629 Sum_probs=145.1
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGE 87 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~ 87 (658)
-|+|+|++| +|||+||.+++|.||.|||+|| +..||+.|.||.|..+|++|+||+ +++|.||.
T Consensus 2 sVlieTtlG-----DlvIDLf~~erP~~clNFLKLC-----------k~KYYN~clfh~vq~~f~aQTGDP-tGtG~GG~ 64 (479)
T KOG0415|consen 2 SVLIETTLG-----DLVIDLFVKERPRTCLNFLKLC-----------KIKYYNFCLFHTVQRDFTAQTGDP-TGTGDGGE 64 (479)
T ss_pred cEEEEeecc-----cEEeeeecccCcHHHHHHHHHH-----------hHhhcccceeeeccccceeecCCC-CCCCCCcc
Confidence 488999987 9999999999999999999999 677999999999999999999998 56999999
Q ss_pred cccCCC-------ccCC-CCCCCCCCCceEeeccCCCCCCCceEEEEeccC-ccCCCCceEEEEEEcCHHHHHHHHhcCC
Q 006162 88 SIYGGK-------FTDE-NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ-HHLDGKHVVFGKVVKGLNIVKKIEQVGT 158 (658)
Q Consensus 88 si~g~~-------~~dE-~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~-p~LDgkytVFGrVIeGmdVLdkI~~v~t 158 (658)
+||+.. |+.| .+.|+|...|+|+|+++|.|.+||||||||+++ ..||++|+|||+|++|||+|.+|+..-+
T Consensus 65 si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~v 144 (479)
T KOG0415|consen 65 SIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIV 144 (479)
T ss_pred eeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhc
Confidence 998643 4555 467999999999999999999999999999876 7999999999999999999999998777
Q ss_pred C-CCCccCCeEeceeeecccccccc
Q 006162 159 G-DGKPAQPVKIIDCGEFSESKIQD 182 (658)
Q Consensus 159 ~-~gkP~~~I~I~~cg~l~~~~~~~ 182 (658)
+ ++.|.++|.|.+..+|.++|.++
T Consensus 145 D~~~rPykdIRI~HTiiLdDPFddp 169 (479)
T KOG0415|consen 145 DPKNRPYKDIRIKHTIILDDPFDDP 169 (479)
T ss_pred CCCCCcccceeeeeeEEecCCCCCc
Confidence 6 78999999999999999999765
No 27
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=5.6e-34 Score=269.35 Aligned_cols=144 Identities=58% Similarity=0.914 Sum_probs=127.9
Q ss_pred EEEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccc
Q 006162 10 FLDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESI 89 (658)
Q Consensus 10 ~fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si 89 (658)
+|+|++| +|+||||.++||++|+||+.||+++ +|+|+.||||+++|+||||++......+ ..
T Consensus 1 ~~~T~~G-----~i~IeL~~~~~P~~~~nF~~l~~~~-----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~ 62 (146)
T cd00317 1 TLDTTKG-----RIVIELYGDEAPKTVENFLSLARGG-----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SG 62 (146)
T ss_pred CeEeccC-----cEEEEEcCCCChHHHHHHHHHHhcC-----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--Cc
Confidence 4667665 9999999999999999999999654 8999999999999999999986554322 35
Q ss_pred cCCCccCCCCCCC-CCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccCCe
Q 006162 90 YGGKFTDENFKLD-HNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPV 167 (658)
Q Consensus 90 ~g~~~~dE~~~l~-h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~~I 167 (658)
++..+++|..... |+.+|+|+|++.+++++++||||+|.++++||++|+|||+|++||+||++|+.++++ ++.|+.+|
T Consensus 63 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i 142 (146)
T cd00317 63 PGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPV 142 (146)
T ss_pred CCCccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCce
Confidence 5678888877655 889999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred Eece
Q 006162 168 KIID 171 (658)
Q Consensus 168 ~I~~ 171 (658)
+|..
T Consensus 143 ~I~~ 146 (146)
T cd00317 143 TISD 146 (146)
T ss_pred EEeC
Confidence 9963
No 28
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=5.9e-33 Score=271.96 Aligned_cols=126 Identities=36% Similarity=0.543 Sum_probs=107.4
Q ss_pred eeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCC---------------
Q 006162 19 PVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNG--------------- 83 (658)
Q Consensus 19 ~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g--------------- 83 (658)
..|+|+||||++.||+||+||+.||+ .+||+++.||||+++||||||++...+.
T Consensus 5 ~~G~i~ieL~~~~aP~t~~NF~~L~~-----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~ 73 (176)
T cd01924 5 DNGTITIVLDGYNAPVTAGNFVDLVE-----------RGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPL 73 (176)
T ss_pred ccceEEEEEcCCCCCHHHHHHHHHHH-----------hCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccc
Confidence 45799999999999999999999995 4599999999999999999999854311
Q ss_pred -----CCCccccCCCc-----cCCCCCCCCCCCceEeeccCC--CCCCCceEEEEec-------cCccCCCCceEEEEEE
Q 006162 84 -----TGGESIYGGKF-----TDENFKLDHNGPGILSMANSG--ANTNGSQFFITFR-------RQHHLDGKHVVFGKVV 144 (658)
Q Consensus 84 -----~gg~si~g~~~-----~dE~~~l~h~~~G~LSma~~g--~ns~gSqFFITL~-------~~p~LDgkytVFGrVI 144 (658)
..+..+|+..+ .+++..+.|+.+|+|+||+.+ +|++++||||+|. ++++||++|+|||+||
T Consensus 74 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~Vv 153 (176)
T cd01924 74 EIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVT 153 (176)
T ss_pred eecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEe
Confidence 11234555444 255677888999999999987 6999999999998 7899999999999999
Q ss_pred cCHHHHHHHHh
Q 006162 145 KGLNIVKKIEQ 155 (658)
Q Consensus 145 eGmdVLdkI~~ 155 (658)
+|||||++|+.
T Consensus 154 eG~dvl~~I~~ 164 (176)
T cd01924 154 DGLDILRELKV 164 (176)
T ss_pred cCHHHHHhhcC
Confidence 99999999975
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4e-06 Score=91.55 Aligned_cols=147 Identities=22% Similarity=0.280 Sum_probs=116.7
Q ss_pred CceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc--CC-C
Q 006162 17 GDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY--GG-K 93 (658)
Q Consensus 17 g~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~--g~-~ 93 (658)
|.++--|.|+||.+-.|..++-|..+| ..+|+++..|.+|+..+++|.||.......+|..-| +. +
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~-----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFC-----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcC-----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 445568999999999999999999999 567999999999999999999996544333332212 22 1
Q ss_pred --ccC--CCCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHhcCCC-CCCccCCeE
Q 006162 94 --FTD--ENFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQVGTG-DGKPAQPVK 168 (658)
Q Consensus 94 --~~d--E~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~v~t~-~gkP~~~I~ 168 (658)
|++ +++.++|. .-++.+...-....+-+|+|+-+..+.|..+..|||.|+.|-+|++.|.++.++ ..+|..++.
T Consensus 177 ~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ccCcccccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 222 35677887 667778777666677899999999999999999999999999999999999887 456777888
Q ss_pred eceeeec
Q 006162 169 IIDCGEF 175 (658)
Q Consensus 169 I~~cg~l 175 (658)
|.++...
T Consensus 256 l~~Velg 262 (558)
T KOG0882|consen 256 LMHVELG 262 (558)
T ss_pred cceeehh
Confidence 8887543
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.02 E-value=0.0022 Score=71.72 Aligned_cols=113 Identities=22% Similarity=0.355 Sum_probs=70.7
Q ss_pred eEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccccCCCccCCCCCC
Q 006162 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (658)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~~l 101 (658)
-|.||||.+.||.+|..|..+. |-+ ..----+.+|=.+++.+|.-|+. -+...+.+||..-
T Consensus 376 vi~IeLydd~AP~s~~yFRk~t-GL~--------~~~VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~ 436 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFT-GLK--------TKPVGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPE 436 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeeEeccCc----------hhccccCCCCCCC
Confidence 6889999999999999999876 211 00011234555566655543332 2234566777666
Q ss_pred CCCCCceEeeccCCCCCCCceEEEEeccCc-------cCCCCceEEEEEEcCHHHHHHHHh
Q 006162 102 DHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 102 ~h~~~G~LSma~~g~ns~gSqFFITL~~~p-------~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
....+|.|+|.|......| -.=|-|.++. .|++ ..|+|+||++|+.|.+|.+
T Consensus 437 ~~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 437 DKVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE 495 (503)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence 6677899998875422111 2334444432 3333 5577999999999988876
No 31
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=96.89 E-value=0.0029 Score=60.89 Aligned_cols=115 Identities=23% Similarity=0.234 Sum_probs=61.0
Q ss_pred EEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCc--eEEeCCCCCCCCCCCccc
Q 006162 12 DVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF--MIQGGDFSKGNGTGGESI 89 (658)
Q Consensus 12 dtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgf--vIQgGd~~~~~g~gg~si 89 (658)
.++++|. .++.+|+.+.||+||+.|+++. =|.+..||-..-+. ||..+++.
T Consensus 2 ~~~~~g~---~~~A~l~~d~AP~Tcaa~~~~L--------------P~~~~~~HarwSG~ei~~~l~~~~---------- 54 (147)
T PF12903_consen 2 TLTKRGV---SFTARLLDDKAPKTCAAFWEAL--------------PLKGKVIHARWSGEEIWIPLPDFD---------- 54 (147)
T ss_dssp EETTTTE---EEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--S----------
T ss_pred eEecCCe---EEEEEEcccCChHHHHHHHHhC--------------CCCCcEEEEEEECcEEEEECCCcC----------
Confidence 3444544 7899999999999999999987 27888888777653 55556642
Q ss_pred cCCCccCCCCCCCCCCCceEeecc-CC----CCCC-CceEEEEeccCccCC-C-----CceEEEEEEcCHHHHHHHHh
Q 006162 90 YGGKFTDENFKLDHNGPGILSMAN-SG----ANTN-GSQFFITFRRQHHLD-G-----KHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 90 ~g~~~~dE~~~l~h~~~G~LSma~-~g----~ns~-gSqFFITL~~~p~LD-g-----kytVFGrVIeGmdVLdkI~~ 155 (658)
...+.-||.... -.+|-|.+.= .+ .+.. -+++-|.++-...|. + --.||++|++|+|-|.++.+
T Consensus 55 -~~~~~~EN~T~~-P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~~ 130 (147)
T PF12903_consen 55 -PFEPGRENHTVT-PIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEACR 130 (147)
T ss_dssp -SS---S-SEESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHHH
T ss_pred -cCCCCCCcCccc-CCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHHH
Confidence 122344554433 3377666651 00 0111 133333333322211 1 14689999999998877764
No 32
>PRK00969 hypothetical protein; Provisional
Probab=96.73 E-value=0.0052 Score=69.05 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=71.2
Q ss_pred eEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccccCCCccCCCCCC
Q 006162 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENFKL 101 (658)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~~l 101 (658)
-|.||||.+.||+||..|..+. |-. ..----+.+|=+.++.+|.-|+. -+...+.+||..-
T Consensus 379 vi~IeLydd~AP~s~~yFR~~t-GL~--------~~~VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~ 439 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVT-GLK--------TKPVGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPE 439 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhc-CCc--------ccccceeEEEEEeCCeEEEccCh----------hhccccCCCCCCC
Confidence 6889999999999999999876 210 00011234555667766654443 2344566777777
Q ss_pred CCCCCceEeeccCCCCCCCceEEEEeccCc------cCCCCceEEEEEEcCHHHHHHHHh
Q 006162 102 DHNGPGILSMANSGANTNGSQFFITFRRQH------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 102 ~h~~~G~LSma~~g~ns~gSqFFITL~~~p------~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
....+|.|+|.|......| -.=|-|.++. +-.....|+|+|| ++|.|.+|.+
T Consensus 440 ~~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTNIIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 440 DKVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTNIIGRVV-NLEKLKKLKE 497 (508)
T ss_pred CccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCceeEEEec-ChHHhccccc
Confidence 7777899998875422111 2334444432 2223356789999 9999888776
No 33
>PRK00969 hypothetical protein; Provisional
Probab=96.44 E-value=0.0083 Score=67.44 Aligned_cols=104 Identities=22% Similarity=0.353 Sum_probs=66.4
Q ss_pred eeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccccCCCccCCCC
Q 006162 20 VEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF 99 (658)
Q Consensus 20 ~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~ 99 (658)
+=-|.|||.++ ||..|++|+.|...+. -+..|+.++ +|- .+...|..++.||+
T Consensus 203 fTy~eve~~~~-~p~s~EH~la~~~~G~------f~Vd~~tst---------fI~-----------d~~L~g~~~p~En~ 255 (508)
T PRK00969 203 FTYVEVELDPG-APKSVEHFLALLEDGT------FEVDFETST---------FIA-----------DDRLQGLKIPEENF 255 (508)
T ss_pred EEEEEEEEcCC-CCchHHHHHHHHhCCe------EEEeeeecc---------eEe-----------eccccCccCCcccc
Confidence 34677788766 8999999999986541 011111111 111 12233445666664
Q ss_pred CCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHh
Q 006162 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 100 ~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
.. -..|+|.+.+.|.+. ...||--.+-+.- -.|+|+|+|+.|||+|+--+.
T Consensus 256 ~~--R~~GtVTVRt~G~g~--G~vYIyredr~ss-~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 256 EP--RRRGTVTVRTAGVGV--GKVYIYREDRPSS-LSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred Cc--cccceEEEEeeccCc--eeEEEECCCCCCC-ccceeEEEEecceeeeecccC
Confidence 33 347999999887543 4788988765422 249999999999999876443
No 34
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.44 E-value=0.0091 Score=66.96 Aligned_cols=104 Identities=22% Similarity=0.334 Sum_probs=66.1
Q ss_pred eeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccccCCCccCCCC
Q 006162 20 VEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDENF 99 (658)
Q Consensus 20 ~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~g~~~~dE~~ 99 (658)
+=-+.|||.++ ||..|++|+.+..++. -+..++.++ +|- .+...|..++.||+
T Consensus 200 fTy~evE~~~~-~p~s~EH~la~~~~G~------~~Vd~~tsT---------fi~-----------d~~L~g~~~p~En~ 252 (503)
T TIGR03268 200 FTYVEVELDPN-APVSVEHFLALMEDGT------FRVDYRTST---------FIS-----------DDSLRGLDKPEENI 252 (503)
T ss_pred EEEEEEEEcCC-CChhHHHHHHHHhCCe------EEEeeeecc---------eEe-----------cccccCccCCcccc
Confidence 34677887765 8999999999985541 011111111 111 12223445566664
Q ss_pred CCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHh
Q 006162 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 100 ~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
. .-..|+|.+.+.|.+. ...||-..+-+.- -.|+|+|+|+.|||+|+--+.
T Consensus 253 ~--~R~rGtVTVRn~G~G~--G~VYIYredr~ss-~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 253 E--KRRRGAVTVRNSGVGE--GRVYIYREDRPSS-LSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred C--cccceeEEEEeeccCc--eeEEEEcCCCCCC-cccceeEEEecceeeeecccC
Confidence 3 3348999999887543 4688888765422 249999999999999876544
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.015 Score=63.35 Aligned_cols=114 Identities=22% Similarity=0.293 Sum_probs=65.2
Q ss_pred eEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCc--eEEeCCCCCCCCCCCccccCCCccCCCC
Q 006162 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF--MIQGGDFSKGNGTGGESIYGGKFTDENF 99 (658)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgf--vIQgGd~~~~~g~gg~si~g~~~~dE~~ 99 (658)
-|+||||.+.||.+|..|..+. |-. ....| -+.+|-+.++. ++.-|+. .++..+.+||.
T Consensus 377 iieIELyed~APrSv~yFRr~t-~l~--~kpVG------kL~Vhfay~d~~~vmfegn~----------~~~K~llPEN~ 437 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST-GLK--TKPVG------KLKVHFAYDDTYLVMFEGNA----------VLAKGLLPENT 437 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc-ccc--ccccc------ceEEEEEeCCceEEEEcCCh----------HHhccCCCCCC
Confidence 5899999999999999999876 211 11111 23344445552 2222222 23344556666
Q ss_pred CCCCCCCceEeeccCCCCCCCceEEEEeccCc------cCCCCceEEEEEEcCHHHHHHHHh
Q 006162 100 KLDHNGPGILSMANSGANTNGSQFFITFRRQH------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 100 ~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p------~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
......+|.|++.|...-..| ..-+-|.++. +-.....++|+|++|.+-|..|..
T Consensus 438 P~d~Ve~g~iGvTN~a~r~~G-mIGVRL~dsdefGPTGE~Fe~TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 438 PADTVEAGEIGVTNQAARHMG-MIGVRLEDSDEFGPTGEKFEGTNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred chhheecccccccccchhccc-eeEEEeccccccCCCCCccccceeehhhccChHHhccccc
Confidence 555555666665543211111 2233444432 222346788999999999998876
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.017 Score=62.87 Aligned_cols=106 Identities=25% Similarity=0.406 Sum_probs=68.8
Q ss_pred ceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCccccCCCccCC
Q 006162 18 DPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIYGGKFTDE 97 (658)
Q Consensus 18 ~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~g~~~~dE 97 (658)
..+-.|.|||-.+ +|+.|++|++|...+ ..=-.+..|-+|. .+...+.+++.|
T Consensus 200 rifTy~eve~s~n-sP~saEH~lalmedG---------------~lri~~~tntfis-----------~~~lq~~~~~~e 252 (512)
T COG4070 200 RIFTYFEVELSRN-SPKSAEHFLALMEDG---------------TLRIDVTTNTFIS-----------DDTLQEEKVPEE 252 (512)
T ss_pred EEEEEEEEEeCCC-CchhHHHHHHHhhcc---------------eEEEEEeccceee-----------ccccccccCChh
Confidence 3345677888876 799999999998533 2222222222221 122334556777
Q ss_pred CCCCCCCCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEcCHHHHHHHHh
Q 006162 98 NFKLDHNGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 98 ~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
|+.+. .+|+|.+.|.|-+. ...||.-.+-+.. -.|.|+|+|++|||+|+-.+.
T Consensus 253 n~d~R--erG~iTvRn~Gvge--GrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~e 305 (512)
T COG4070 253 NFDLR--ERGAITVRNVGVGE--GRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAEE 305 (512)
T ss_pred hhhhh--hcceEEEEeeeccc--ceEEEEecCCCCc-cccceeeeeecceEEEEeccc
Confidence 76654 47999999876443 4788887665322 248999999999999886654
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=94.47 E-value=0.13 Score=47.95 Aligned_cols=103 Identities=20% Similarity=0.225 Sum_probs=55.8
Q ss_pred EEEEeCCceeeeEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEEeCCCCCCCCCCCcccc
Q 006162 11 LDVSIDGDPVEKIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQGGDFSKGNGTGGESIY 90 (658)
Q Consensus 11 fdtsigg~~~GrIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQgGd~~~~~g~gg~si~ 90 (658)
|.|++|+. .|.++|+.. .|++.|++++ +.+.....|-+ -|+--++
T Consensus 3 I~i~i~~~---~~~a~L~d~---~ta~~~~~~L-------Plt~~~~~~g~-E~y~~~p--------------------- 47 (120)
T PF04126_consen 3 IKITIGGQ---EIEAELNDS---PTARAFAAQL-------PLTVTMNDWGN-EKYFSLP--------------------- 47 (120)
T ss_dssp EEEEETTE---EEEEEEETT---HHHHHHHHC--------SEEEEEEECTT-EEEEE-S---------------------
T ss_pred EEEEECCE---EEEEEECCC---HHHHHHHHhC-------CeEEEHHHCCc-eEEEeCC---------------------
Confidence 56777754 899999988 7999999987 11111122221 1111101
Q ss_pred CCCcc-CCCCCCCCCCCceEeeccCCCCCCCceEEEEeccCc-------cCCCCceEEEEEEcCHHHHHHHHh
Q 006162 91 GGKFT-DENFKLDHNGPGILSMANSGANTNGSQFFITFRRQH-------HLDGKHVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 91 g~~~~-dE~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~p-------~LDgkytVFGrVIeGmdVLdkI~~ 155 (658)
..+. +++.. .....|-|+....+ .-|.|-+++.+ .+-...++||+|+.|+++|.+|..
T Consensus 48 -~~l~~~~~~~-~~~~~GDi~Yw~pg-----~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 48 -LKLPTEENPR-SSVEAGDIAYWPPG-----GALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp ------SSSEE-SSB-TTEEEEECCC-----TEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred -CCCCcccCcc-ccccCceEEEeCCC-----CEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 0111 12222 22357888876432 34777777664 455679999999999999888764
No 38
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.78 E-value=0.058 Score=55.76 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=3.5
Q ss_pred HHhhhcccC
Q 006162 217 RRQKRKRRY 225 (658)
Q Consensus 217 ~k~k~~~~~ 225 (658)
+|+|+++..
T Consensus 180 rKkkkRrrd 188 (306)
T KOG2985|consen 180 RKKKKRRRD 188 (306)
T ss_pred hhhhhhccc
Confidence 333344433
No 39
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=92.17 E-value=0.34 Score=46.64 Aligned_cols=11 Identities=73% Similarity=0.601 Sum_probs=4.3
Q ss_pred CCCCCCccccc
Q 006162 302 SRSSSDSESLS 312 (658)
Q Consensus 302 ~~S~sd~~s~s 312 (658)
+.+++|+++++
T Consensus 142 SsSssdSdS~s 152 (177)
T KOG3116|consen 142 SSSSSDSDSES 152 (177)
T ss_pred cCCCCcccccc
Confidence 33334444333
No 40
>PHA03001 putative virion core protein; Provisional
Probab=78.41 E-value=5.9 Score=37.49 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=38.1
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChh------hHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCc
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPK------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGF 71 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APk------tv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgf 71 (658)
-|||++..|.. .|.|++-+..||. ++++||++.. +...-+-+.|+=+|++.
T Consensus 5 NIfLEsd~grv---kl~~~~~~~~~~~~~~~~ka~~~fl~~L~----------kYi~v~eStFylvvrd~ 61 (132)
T PHA03001 5 NIFLETDAGRV---KLAIENPDKVCATKAEMRKAINKFLELLK----------KYIHVDKSTFYLVVKDK 61 (132)
T ss_pred EEEEeccCCce---EEEEcCCCccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEecC
Confidence 47899987733 5666666767775 7889999883 45567889999998873
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=77.51 E-value=24 Score=40.79 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=11.6
Q ss_pred CCCCCCCeEEEEEEeC
Q 006162 1 MSEKKNPLVFLDVSID 16 (658)
Q Consensus 1 m~~~~nP~V~fdtsig 16 (658)
+|.+.-+.|||-|.++
T Consensus 247 LPk~d~rh~~fVisld 262 (615)
T KOG0526|consen 247 LPKKDQRHVYFVISLD 262 (615)
T ss_pred ccCCCCceEEEEEecC
Confidence 3555667888888875
No 42
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.01 E-value=1.2 Score=48.30 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.7
Q ss_pred hhhcccc
Q 006162 206 TVRRHKK 212 (658)
Q Consensus 206 ~kkk~Kk 212 (658)
.+++.|+
T Consensus 197 ~KkkskR 203 (426)
T KOG2812|consen 197 RKKKSKR 203 (426)
T ss_pred hhhhhhh
Confidence 3333333
No 43
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=69.60 E-value=13 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=34.3
Q ss_pred eEEEEEEeCCceeeeEEEEEcCCCChh-------hHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecC
Q 006162 8 LVFLDVSIDGDPVEKIVIELFADVVPK-------TAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKG 70 (658)
Q Consensus 8 ~V~fdtsigg~~~GrIvIELf~d~APk-------tv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipg 70 (658)
-|||++..|.. .|.|++-...||. +++.||+... +...-+-+.|+=+|++
T Consensus 5 NIfLEsd~grv---kl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~----------kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLESDSGRV---KLRYEEPDCKCARTGCEARRAVKHFLSVLK----------KYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEeccCcee---EEEEeCCCcccccccchHHHHHHHHHHHHH----------hhEEecccEEEEEEec
Confidence 47888887722 4455555544444 5889999883 4445688999999887
No 44
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=66.35 E-value=1.4 Score=48.57 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=11.7
Q ss_pred CCChhhHHHHHHhhcCC
Q 006162 30 DVVPKTAENFRALCTGE 46 (658)
Q Consensus 30 d~APktv~NFl~Lc~g~ 46 (658)
.|++.+-+-|-.||.+.
T Consensus 94 ewq~~~eapRE~~ak~~ 110 (453)
T KOG3794|consen 94 EWQRKYEAPREKLAKAP 110 (453)
T ss_pred cccccccccHHHHhcCC
Confidence 45676667777788665
No 45
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=64.89 E-value=96 Score=39.33 Aligned_cols=9 Identities=22% Similarity=0.180 Sum_probs=4.9
Q ss_pred CceEEEEEE
Q 006162 136 KHVVFGKVV 144 (658)
Q Consensus 136 kytVFGrVI 144 (658)
+.++|=+|+
T Consensus 1222 klv~r~ri~ 1230 (1605)
T KOG0260|consen 1222 KLVLRLRIA 1230 (1605)
T ss_pred ceEEEEEec
Confidence 355555555
No 46
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=61.57 E-value=13 Score=34.19 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=22.2
Q ss_pred EEEEeccCccCCCC------ceEEEEEEcCHHHHHHHHh
Q 006162 123 FFITFRRQHHLDGK------HVVFGKVVKGLNIVKKIEQ 155 (658)
Q Consensus 123 FFITL~~~p~LDgk------ytVFGrVIeGmdVLdkI~~ 155 (658)
+.|.|+..|.-|.+ ..|+|+|+++||.|..|..
T Consensus 79 lClFFGkTpmsddkiqPaSaVNvIGrIv~~lE~lk~v~d 117 (126)
T COG2164 79 LCLFFGKTPMSDDKIQPASAVNVIGRIVKNLELLKSVDD 117 (126)
T ss_pred EEEEecCCcCcccccCccchHHHHHHHHhhHHhhhcccC
Confidence 33344445555543 4579999999999988764
No 47
>KOG2985 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.03 E-value=5.8 Score=41.55 Aligned_cols=8 Identities=13% Similarity=0.667 Sum_probs=3.5
Q ss_pred EEEeccCc
Q 006162 124 FITFRRQH 131 (658)
Q Consensus 124 FITL~~~p 131 (658)
||.+.+..
T Consensus 100 ~~~vke~~ 107 (306)
T KOG2985|consen 100 FLSVKEDK 107 (306)
T ss_pred hhhccccc
Confidence 44444443
No 48
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=56.70 E-value=3.5e+02 Score=34.78 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.3
Q ss_pred CHHHHH
Q 006162 146 GLNIVK 151 (658)
Q Consensus 146 GmdVLd 151 (658)
+.|+|.
T Consensus 1157 d~e~v~ 1162 (1605)
T KOG0260|consen 1157 DREFVV 1162 (1605)
T ss_pred chhhHH
Confidence 344333
No 49
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.88 E-value=7.4 Score=42.77 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=89.3
Q ss_pred eEEEEEcCCCChhhHHHHHHhhcCCCCCCcCCCCCccccCcEEEEeecCceEE---------eCCCCCCCCCCCccccCC
Q 006162 22 KIVIELFADVVPKTAENFRALCTGEKGIGKSTGKPLHYKGTMFHRIIKGFMIQ---------GGDFSKGNGTGGESIYGG 92 (658)
Q Consensus 22 rIvIELf~d~APktv~NFl~Lc~g~~g~~~~~~k~~~Y~Gt~F~RVipgfvIQ---------gGd~~~~~g~gg~si~g~ 92 (658)
.+++-.-.+.-|+.|-.|+.-+... -.-||.++..-.|..|++|. .|-+... ...|..+
T Consensus 66 ~~~~~st~e~pPL~~iefL~rv~dv--------~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~t----E~NiLke 133 (418)
T KOG2740|consen 66 FFCAVSTVETPPLMVIEFLHRVVDV--------LLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVT----EPNILKE 133 (418)
T ss_pred EEEEEEeccCCChhHHHHHHHHHHH--------HHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCccc----ChhHHHh
Confidence 4555555677799999999876432 23488889888888887554 3322111 0111111
Q ss_pred CccCC----------------CCCCCCCCCceEeeccCCCCCCCceEEEEeccC--ccCC-CCceEEEEEEcCHHHHHHH
Q 006162 93 KFTDE----------------NFKLDHNGPGILSMANSGANTNGSQFFITFRRQ--HHLD-GKHVVFGKVVKGLNIVKKI 153 (658)
Q Consensus 93 ~~~dE----------------~~~l~h~~~G~LSma~~g~ns~gSqFFITL~~~--p~LD-gkytVFGrVIeGmdVLdkI 153 (658)
-++.. ...|.....-+|-|...+....+.+|||-+-+. ..+| .+-+|||.|-.-+|+.-+|
T Consensus 134 ~i~pps~l~~~~~svTg~~n~~~~lPtg~~s~VPWR~~~~Ky~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qL 213 (418)
T KOG2740|consen 134 LIPPPSFLSKKFNSVTGNSNVSDTLPTGALSNVPWRTAGVKYTNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQL 213 (418)
T ss_pred hcCChHHHHHHHhhhhccccccccCCCcccccccccccCcccccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEee
Confidence 11111 112333334456676777777778999976331 1122 2359999998888888888
Q ss_pred HhcCC-----CCCCccCCeEeceeeecccc
Q 006162 154 EQVGT-----GDGKPAQPVKIIDCGEFSES 178 (658)
Q Consensus 154 ~~v~t-----~~gkP~~~I~I~~cg~l~~~ 178 (658)
..+|. .++..+.++....|..+..-
T Consensus 214 sgmPdltlsl~np~~L~dvsfHpcVr~krw 243 (418)
T KOG2740|consen 214 SGMPDLTLSLNNPRLLGDVSFHPCVRYKRW 243 (418)
T ss_pred cCCCceEEEccCccccCCcccccceeeccc
Confidence 87764 25677777888888776553
No 50
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=50.59 E-value=9.7 Score=43.86 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=8.9
Q ss_pred CCCCceEEEEe
Q 006162 117 NTNGSQFFITF 127 (658)
Q Consensus 117 ns~gSqFFITL 127 (658)
|..+..|-|+|
T Consensus 619 np~n~RfsINf 629 (739)
T KOG2140|consen 619 NPRNTRFSINF 629 (739)
T ss_pred Ccccceeeeeh
Confidence 56778899988
No 51
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.82 E-value=63 Score=39.80 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCCCCceEEEEe-----------ccCccCCCCceEE---EEEEcCHHH
Q 006162 116 ANTNGSQFFITF-----------RRQHHLDGKHVVF---GKVVKGLNI 149 (658)
Q Consensus 116 ~ns~gSqFFITL-----------~~~p~LDgkytVF---GrVIeGmdV 149 (658)
-+.+|.|..|+. .-.|.||...++| |.|+-+|..
T Consensus 1274 FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~~~ 1321 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAMLN 1321 (1516)
T ss_pred ccCCCceEEeechhhhhHHHHHHhcCccccceEEEeccCccchhhhhh
Confidence 357788988874 4568999988888 788888773
No 52
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=40.51 E-value=1.5e+02 Score=28.68 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.3
Q ss_pred CCCceEEEEEEcCHHHHHH
Q 006162 134 DGKHVVFGKVVKGLNIVKK 152 (658)
Q Consensus 134 DgkytVFGrVIeGmdVLdk 152 (658)
-+....+|+|..|++.|..
T Consensus 137 s~~L~~LGkidsG~e~i~~ 155 (166)
T COG4925 137 SGGLYELGKIDSGGEHIKN 155 (166)
T ss_pred cccceecceeecchHhhcC
Confidence 3556789999999998765
No 53
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=37.33 E-value=99 Score=32.41 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=30.3
Q ss_pred EEEEEEeCCceee-eEEEEEcCCCChhhHHHHHHhhc
Q 006162 9 VFLDVSIDGDPVE-KIVIELFADVVPKTAENFRALCT 44 (658)
Q Consensus 9 V~fdtsigg~~~G-rIvIELf~d~APktv~NFl~Lc~ 44 (658)
=+++|+.-+.++| ..||.+++..||.+|.-|++|+-
T Consensus 71 h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLlG 107 (242)
T KOG3953|consen 71 HAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALLG 107 (242)
T ss_pred eEEEEEecCCccCCcceEEEEcccCchhhhHHHHHhC
Confidence 3567777776777 67999999999999999999983
No 54
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=37.21 E-value=75 Score=30.92 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=20.4
Q ss_pred EeeccCCCCCCCceEEEEeccCccCCCCceEE-EEEEcC
Q 006162 109 LSMANSGANTNGSQFFITFRRQHHLDGKHVVF-GKVVKG 146 (658)
Q Consensus 109 LSma~~g~ns~gSqFFITL~~~p~LDgkytVF-GrVIeG 146 (658)
|++....+|.+.-.|.|+|.+....- ...| -+|+++
T Consensus 75 i~~~~~~pn~~~~~~lInl~d~~~~~--~~~~~~~v~d~ 111 (144)
T COG2927 75 IAWPGGNPNSARVDLLINLADEFPDF--AYEFVTRVFDF 111 (144)
T ss_pred EEcCCCCCCCCceeEEEeccccCCCc--cceEEEEEeec
Confidence 44433334444557999997764332 2334 667776
No 55
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=35.63 E-value=37 Score=39.18 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=3.6
Q ss_pred HHHHHhh
Q 006162 37 ENFRALC 43 (658)
Q Consensus 37 ~NFl~Lc 43 (658)
..||++.
T Consensus 38 ~QflQ~h 44 (653)
T KOG2548|consen 38 IQFLQAH 44 (653)
T ss_pred HHHHHHh
Confidence 3455554
No 56
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=34.79 E-value=18 Score=38.19 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=4.4
Q ss_pred ceEEEEecc
Q 006162 121 SQFFITFRR 129 (658)
Q Consensus 121 SqFFITL~~ 129 (658)
+|++|.+.-
T Consensus 116 TQylir~rk 124 (303)
T KOG3064|consen 116 TQYLIRMRK 124 (303)
T ss_pred HHHHHHHHH
Confidence 455555433
No 57
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.77 E-value=13 Score=41.54 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=5.6
Q ss_pred cccCCCccCCCC
Q 006162 88 SIYGGKFTDENF 99 (658)
Q Consensus 88 si~g~~~~dE~~ 99 (658)
.++|-.|.++.+
T Consensus 85 yllGrk~~ke~~ 96 (450)
T KOG3869|consen 85 YLLGRKILKESF 96 (450)
T ss_pred ccccchhHHHHH
Confidence 344555555443
No 58
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.25 E-value=25 Score=39.87 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=17.6
Q ss_pred CCCceEEEEeccCccCCCCceEEEEEEcCHHHH
Q 006162 118 TNGSQFFITFRRQHHLDGKHVVFGKVVKGLNIV 150 (658)
Q Consensus 118 s~gSqFFITL~~~p~LDgkytVFGrVIeGmdVL 150 (658)
..+|-|||.- -..|-.-|-|||.|-.=++||
T Consensus 234 de~Svlf~ed--R~~lG~I~EiFGpV~~P~Yvv 264 (483)
T KOG2236|consen 234 DEDSVLFLED--RTALGQIFEIFGPVKNPYYVV 264 (483)
T ss_pred cccceEEeec--cccchhhhhhhcccCCceEEE
Confidence 4455565554 233333477888886666554
No 59
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.98 E-value=29 Score=38.48 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCceEeeccCCCCCCCceEEEEeccCccCCCCceEEEEEEc-CHHHHHHHHh
Q 006162 104 NGPGILSMANSGANTNGSQFFITFRRQHHLDGKHVVFGKVVK-GLNIVKKIEQ 155 (658)
Q Consensus 104 ~~~G~LSma~~g~ns~gSqFFITL~~~p~LDgkytVFGrVIe-GmdVLdkI~~ 155 (658)
-..|.|.+.|......-.+.-|++.+.|. |+...|+|+|++ -|.+|+.|..
T Consensus 298 r~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~~ 349 (357)
T PF05913_consen 298 RKRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIKP 349 (357)
T ss_dssp B-TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--T
T ss_pred ccCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcCC
Confidence 45899999987655666799999999886 888999999995 7889988875
No 60
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=25.52 E-value=24 Score=41.97 Aligned_cols=8 Identities=38% Similarity=0.941 Sum_probs=4.3
Q ss_pred CceEEEEE
Q 006162 136 KHVVFGKV 143 (658)
Q Consensus 136 kytVFGrV 143 (658)
.-+|||-|
T Consensus 683 n~~IfgD~ 690 (883)
T KOG2138|consen 683 NQTIFGDV 690 (883)
T ss_pred HHHHhccc
Confidence 34556655
No 61
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=23.05 E-value=7.4e+02 Score=24.47 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.0
Q ss_pred EEEEEcCC--CChhhHHHHHHhh
Q 006162 23 IVIELFAD--VVPKTAENFRALC 43 (658)
Q Consensus 23 IvIELf~d--~APktv~NFl~Lc 43 (658)
|.||+|+. .-|.|++.||+..
T Consensus 1 iqieIfP~R~L~peTtEklLN~l 23 (153)
T PF02505_consen 1 IQIEIFPHRLLKPETTEKLLNEL 23 (153)
T ss_pred CcEEEechhcCCHHHHHHHHHHH
Confidence 45788886 7899999999987
No 62
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=22.07 E-value=72 Score=31.07 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=20.2
Q ss_pred EeeccCCCCCCCceEEEEeccCccCCC
Q 006162 109 LSMANSGANTNGSQFFITFRRQHHLDG 135 (658)
Q Consensus 109 LSma~~g~ns~gSqFFITL~~~p~LDg 135 (658)
+++...|....|..+||||.++.|+-.
T Consensus 57 ~Al~~ag~~a~Gat~yVTLEPCsH~Gr 83 (146)
T COG0117 57 CALRMAGEAARGATAYVTLEPCSHYGR 83 (146)
T ss_pred HHHHHcCcccCCCEEEEEecCcccCCC
Confidence 344444667889999999999887653
Done!