Query 006164
Match_columns 658
No_of_seqs 279 out of 1458
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 6E-109 1E-113 882.1 32.7 536 48-655 15-555 (556)
2 TIGR00512 salvage_mtnA S-methy 100.0 1.9E-69 4.1E-74 572.2 29.0 303 298-641 8-331 (331)
3 PRK05720 mtnA methylthioribose 100.0 5E-69 1.1E-73 572.2 30.2 315 297-652 10-341 (344)
4 PRK08535 translation initiatio 100.0 1.6E-68 3.4E-73 562.9 32.7 304 327-653 2-305 (310)
5 COG0182 Predicted translation 100.0 2E-68 4.2E-73 551.5 25.8 309 299-646 13-339 (346)
6 TIGR00511 ribulose_e2b2 ribose 100.0 1.6E-67 3.4E-72 553.3 31.2 289 342-653 12-300 (301)
7 PRK05772 translation initiatio 100.0 3.1E-67 6.8E-72 559.9 31.6 314 297-647 23-357 (363)
8 PRK06036 translation initiatio 100.0 5.1E-67 1.1E-71 555.2 28.1 306 298-644 11-333 (339)
9 PRK08334 translation initiatio 100.0 7.5E-66 1.6E-70 547.2 31.1 316 297-652 21-353 (356)
10 PRK06371 translation initiatio 100.0 4.8E-66 1E-70 544.7 27.2 292 297-647 19-327 (329)
11 COG1184 GCD2 Translation initi 100.0 6.1E-65 1.3E-69 527.9 31.6 299 328-652 2-300 (301)
12 TIGR00524 eIF-2B_rel eIF-2B al 100.0 6.5E-65 1.4E-69 533.7 29.8 292 315-641 1-303 (303)
13 PF01008 IF-2B: Initiation fac 100.0 3.8E-64 8.2E-69 520.4 25.2 281 343-641 1-282 (282)
14 PRK08335 translation initiatio 100.0 2.7E-61 5.9E-66 498.9 30.7 232 375-643 42-273 (275)
15 KOG1468 Predicted translation 100.0 3.4E-60 7.4E-65 479.3 19.3 312 297-644 10-345 (354)
16 KOG1465 Translation initiation 100.0 1.5E-53 3.2E-58 436.0 29.0 306 331-655 10-349 (353)
17 KOG1466 Translation initiation 100.0 8.4E-52 1.8E-56 416.0 24.7 281 349-651 28-311 (313)
18 PRK06372 translation initiatio 100.0 6.8E-50 1.5E-54 409.2 23.0 246 340-645 7-252 (253)
19 PRK00702 ribose-5-phosphate is 97.4 0.0021 4.6E-08 65.9 12.9 120 440-572 6-128 (220)
20 TIGR00021 rpiA ribose 5-phosph 97.3 0.0023 4.9E-08 65.6 12.3 118 442-572 3-124 (218)
21 cd01398 RPI_A RPI_A: Ribose 5- 97.3 0.002 4.3E-08 65.6 11.1 117 442-572 3-124 (213)
22 PRK10434 srlR DNA-bindng trans 97.1 0.0095 2.1E-07 62.1 14.3 123 440-571 77-214 (256)
23 PRK13509 transcriptional repre 97.1 0.0054 1.2E-07 63.8 12.3 121 440-571 79-213 (251)
24 PRK09802 DNA-binding transcrip 96.9 0.018 3.8E-07 60.6 14.5 121 441-570 93-228 (269)
25 PRK10906 DNA-binding transcrip 96.8 0.028 6.1E-07 58.6 14.4 122 440-570 77-213 (252)
26 PF00455 DeoRC: DeoR C termina 96.7 0.029 6.3E-07 54.6 12.7 123 440-571 5-142 (161)
27 PRK10411 DNA-binding transcrip 95.8 0.11 2.4E-06 53.8 12.1 121 440-570 79-214 (240)
28 COG1349 GlpR Transcriptional r 95.5 0.2 4.4E-06 52.3 12.8 123 440-571 77-214 (253)
29 PRK10681 DNA-binding transcrip 95.1 0.27 5.8E-06 51.2 12.1 121 441-570 79-214 (252)
30 PLN02384 ribose-5-phosphate is 94.0 0.88 1.9E-05 48.2 13.0 115 444-571 39-158 (264)
31 PRK13978 ribose-5-phosphate is 92.2 1.8 3.9E-05 45.0 11.9 117 442-571 9-129 (228)
32 KOG0259 Tyrosine aminotransfer 90.9 1.5 3.3E-05 48.6 10.2 116 439-561 107-237 (447)
33 COG0120 RpiA Ribose 5-phosphat 88.0 6.2 0.00013 41.1 11.6 118 442-571 8-127 (227)
34 COG2057 AtoA Acyl CoA:acetate/ 86.5 1.6 3.4E-05 45.3 6.2 101 440-543 7-120 (225)
35 PF02254 TrkA_N: TrkA-N domain 85.1 3.7 8.1E-05 36.6 7.4 93 458-567 1-100 (116)
36 COG0426 FpaA Uncharacterized f 84.4 16 0.00035 40.9 13.3 142 424-569 183-342 (388)
37 PRK04311 selenocysteine syntha 82.9 23 0.0005 40.4 14.2 113 447-563 135-257 (464)
38 TIGR00474 selA seryl-tRNA(sec) 81.2 51 0.0011 37.6 16.0 112 448-563 131-252 (454)
39 cd00293 USP_Like Usp: Universa 79.0 29 0.00064 29.9 10.7 93 466-562 15-130 (130)
40 TIGR01437 selA_rel uncharacter 78.4 26 0.00056 38.3 12.2 137 418-561 26-184 (363)
41 PF01073 3Beta_HSD: 3-beta hyd 75.8 6.3 0.00014 41.6 6.4 97 468-567 11-118 (280)
42 TIGR00273 iron-sulfur cluster- 73.7 46 0.00099 37.9 12.9 50 522-572 181-231 (432)
43 cd01989 STK_N The N-terminal d 72.4 40 0.00087 30.9 10.2 60 501-563 74-144 (146)
44 PRK09496 trkA potassium transp 71.6 45 0.00097 37.0 12.1 62 449-512 199-261 (453)
45 KOG3075 Ribose 5-phosphate iso 70.2 28 0.00061 36.9 9.4 116 444-570 31-150 (261)
46 TIGR01228 hutU urocanate hydra 69.4 28 0.00061 40.1 9.8 89 372-464 205-317 (545)
47 PRK08134 O-acetylhomoserine am 68.5 54 0.0012 37.0 12.0 99 456-562 81-185 (433)
48 PLN02651 cysteine desulfurase 68.0 79 0.0017 34.0 12.8 102 454-561 60-173 (364)
49 PRK05414 urocanate hydratase; 67.9 30 0.00064 40.1 9.6 89 372-464 214-326 (556)
50 PRK07582 cystathionine gamma-l 67.5 52 0.0011 36.0 11.4 95 455-561 66-167 (366)
51 PRK14106 murD UDP-N-acetylmura 66.9 40 0.00087 37.5 10.5 94 454-561 4-97 (450)
52 PRK01438 murD UDP-N-acetylmura 66.6 27 0.00058 39.4 9.2 72 454-530 15-86 (480)
53 TIGR01140 L_thr_O3P_dcar L-thr 65.6 45 0.00097 35.5 10.2 99 454-561 64-163 (330)
54 PF03853 YjeF_N: YjeF-related 64.9 1E+02 0.0022 30.1 11.8 121 437-561 5-136 (169)
55 PRK07810 O-succinylhomoserine 64.8 94 0.002 34.6 12.9 98 456-561 87-190 (403)
56 PRK11557 putative DNA-binding 64.6 94 0.002 32.3 12.2 43 488-530 185-227 (278)
57 TIGR03235 DNA_S_dndA cysteine 64.3 1.1E+02 0.0024 32.5 13.0 102 455-561 60-173 (353)
58 PRK10886 DnaA initiator-associ 64.0 1.7E+02 0.0037 29.7 14.0 37 521-564 108-144 (196)
59 PRK09932 glycerate kinase II; 63.8 8.4 0.00018 43.0 4.3 62 493-568 267-328 (381)
60 PRK12454 carbamate kinase-like 63.4 71 0.0015 34.9 11.2 50 514-563 176-233 (313)
61 PRK05839 hypothetical protein; 63.0 67 0.0015 34.9 11.1 105 452-561 81-193 (374)
62 cd00532 MGS-like MGS-like doma 63.0 87 0.0019 28.5 10.2 85 469-568 16-111 (112)
63 PF01175 Urocanase: Urocanase; 62.9 33 0.00071 39.7 8.8 116 372-491 204-361 (546)
64 PRK08133 O-succinylhomoserine 62.9 99 0.0021 34.2 12.5 98 456-561 78-181 (390)
65 PRK05613 O-acetylhomoserine am 62.8 69 0.0015 36.3 11.5 100 456-562 86-191 (437)
66 cd05005 SIS_PHI Hexulose-6-pho 62.8 93 0.002 30.3 11.1 37 493-529 90-126 (179)
67 TIGR01470 cysG_Nterm siroheme 62.6 51 0.0011 33.4 9.5 94 454-564 8-102 (205)
68 TIGR03402 FeS_nifS cysteine de 62.2 1.2E+02 0.0027 32.6 12.9 103 454-561 59-171 (379)
69 cd06454 KBL_like KBL_like; thi 61.7 87 0.0019 32.9 11.4 99 455-562 62-168 (349)
70 TIGR03127 RuMP_HxlB 6-phospho 61.6 1E+02 0.0022 29.9 11.1 38 493-530 87-124 (179)
71 PRK00025 lpxB lipid-A-disaccha 61.2 1.1E+02 0.0024 32.7 12.3 71 478-565 218-289 (380)
72 cd01987 USP_OKCHK USP domain i 61.0 1.2E+02 0.0026 26.9 10.6 94 466-562 15-123 (124)
73 TIGR02006 IscS cysteine desulf 60.3 1.5E+02 0.0032 32.6 13.3 103 454-561 64-177 (402)
74 cd06451 AGAT_like Alanine-glyo 59.3 1.3E+02 0.0028 31.9 12.3 100 455-562 50-160 (356)
75 PRK15118 universal stress glob 59.2 1.5E+02 0.0031 27.2 11.2 35 522-562 103-137 (144)
76 cd01424 MGS_CPS_II Methylglyox 58.9 1.1E+02 0.0025 27.3 10.1 94 456-565 2-104 (110)
77 PRK12475 thiamine/molybdopteri 58.8 87 0.0019 34.3 11.0 110 443-563 13-148 (338)
78 PF00535 Glycos_transf_2: Glyc 58.7 31 0.00068 30.9 6.5 56 457-512 3-59 (169)
79 PTZ00433 tyrosine aminotransfe 58.6 84 0.0018 34.6 11.1 103 452-561 102-215 (412)
80 PRK08248 O-acetylhomoserine am 58.5 86 0.0019 35.4 11.3 99 456-562 81-185 (431)
81 PRK08574 cystathionine gamma-s 58.0 98 0.0021 34.2 11.4 97 456-561 70-172 (385)
82 PRK11337 DNA-binding transcrip 58.0 1.5E+02 0.0033 31.1 12.4 48 482-529 191-238 (292)
83 cd04235 AAK_CK AAK_CK: Carbama 57.7 1.5E+02 0.0032 32.4 12.3 50 514-563 172-229 (308)
84 cd00614 CGS_like CGS_like: Cys 57.5 91 0.002 34.0 11.0 98 456-562 57-161 (369)
85 TIGR01329 cysta_beta_ly_E cyst 57.4 1.2E+02 0.0026 33.4 11.9 100 456-563 64-168 (378)
86 PRK13520 L-tyrosine decarboxyl 57.4 1.5E+02 0.0033 31.5 12.5 102 454-562 76-187 (371)
87 TIGR00045 glycerate kinase. Th 57.3 12 0.00026 41.7 4.2 63 493-569 266-328 (375)
88 TIGR03576 pyridox_MJ0158 pyrid 57.1 2.9E+02 0.0063 30.1 15.4 133 419-561 36-173 (346)
89 COG4635 HemG Flavodoxin [Energ 56.5 11 0.00023 37.6 3.1 67 495-563 19-86 (175)
90 PRK05973 replicative DNA helic 56.4 2.3E+02 0.0049 29.8 13.1 113 452-568 61-195 (237)
91 PF01488 Shikimate_DH: Shikima 55.4 58 0.0013 30.5 7.9 73 454-530 11-83 (135)
92 PRK07309 aromatic amino acid a 55.0 1.2E+02 0.0026 33.1 11.5 101 454-561 91-204 (391)
93 PRK10342 glycerate kinase I; P 54.7 15 0.00033 41.0 4.4 63 493-569 267-329 (381)
94 TIGR01325 O_suc_HS_sulf O-succ 54.4 1.7E+02 0.0037 32.1 12.5 97 456-561 71-174 (380)
95 TIGR01979 sufS cysteine desulf 53.6 2.8E+02 0.0061 30.0 14.0 103 455-563 81-196 (403)
96 COG1929 Glycerate kinase [Carb 53.6 16 0.00034 40.6 4.2 64 492-569 266-329 (378)
97 PRK02947 hypothetical protein; 53.6 2.8E+02 0.0061 28.9 14.8 38 492-529 120-168 (246)
98 cd01988 Na_H_Antiporter_C The 53.5 1.5E+02 0.0032 26.2 10.0 61 499-562 63-131 (132)
99 PTZ00357 methyltransferase; Pr 52.9 1.4E+02 0.003 36.4 11.8 70 457-527 703-797 (1072)
100 TIGR01326 OAH_OAS_sulfhy OAH/O 52.7 1.4E+02 0.0031 33.3 11.7 98 456-562 74-178 (418)
101 PRK07865 N-succinyldiaminopime 52.0 1.1E+02 0.0023 33.0 10.4 95 452-561 84-186 (364)
102 cd03466 Nitrogenase_NifN_2 Nit 52.0 3.9E+02 0.0085 30.1 15.5 96 454-563 299-397 (429)
103 PRK07812 O-acetylhomoserine am 51.9 1.3E+02 0.0029 34.0 11.4 99 457-563 87-192 (436)
104 TIGR02428 pcaJ_scoB_fam 3-oxoa 51.7 61 0.0013 33.1 7.9 93 441-540 3-112 (207)
105 TIGR03392 FeS_syn_CsdA cystein 51.6 2.3E+02 0.005 30.8 13.0 101 455-561 79-192 (398)
106 PRK09331 Sep-tRNA:Cys-tRNA syn 51.6 1.5E+02 0.0033 32.4 11.5 15 547-561 179-193 (387)
107 PLN02409 serine--glyoxylate am 51.5 1.4E+02 0.003 32.9 11.3 98 456-561 61-174 (401)
108 PRK05678 succinyl-CoA syntheta 51.4 99 0.0021 33.4 9.8 103 456-560 67-173 (291)
109 PRK07683 aminotransferase A; V 51.3 1.4E+02 0.003 32.6 11.1 93 456-561 91-199 (387)
110 PRK05749 3-deoxy-D-manno-octul 51.3 1E+02 0.0022 33.9 10.2 97 454-563 49-154 (425)
111 COG1737 RpiR Transcriptional r 51.3 2.9E+02 0.0062 29.3 13.2 45 487-531 186-230 (281)
112 cd01494 AAT_I Aspartate aminot 51.2 1.9E+02 0.0041 26.2 11.1 100 453-561 16-127 (170)
113 TIGR00639 PurN phosphoribosylg 51.1 82 0.0018 31.7 8.6 75 457-534 4-92 (190)
114 PRK06702 O-acetylhomoserine am 51.0 1.5E+02 0.0032 33.7 11.6 99 456-562 78-183 (432)
115 PF00266 Aminotran_5: Aminotra 50.7 1.7E+02 0.0036 31.5 11.6 102 455-562 62-175 (371)
116 COG0855 Ppk Polyphosphate kina 50.5 41 0.00088 40.0 7.0 50 462-512 382-433 (696)
117 PRK05443 polyphosphate kinase; 50.4 45 0.00098 40.2 7.7 50 463-513 379-430 (691)
118 cd06453 SufS_like Cysteine des 50.4 2.7E+02 0.0058 29.8 13.0 102 456-563 63-176 (373)
119 PRK10874 cysteine sulfinate de 50.0 2.4E+02 0.0052 30.7 12.8 102 455-562 82-196 (401)
120 PLN02260 probable rhamnose bio 50.0 65 0.0014 38.0 8.9 89 479-568 379-485 (668)
121 PRK05968 hypothetical protein; 49.9 2E+02 0.0043 31.8 12.2 99 456-562 80-183 (389)
122 PRK01710 murD UDP-N-acetylmura 49.7 1E+02 0.0022 34.8 10.0 92 455-560 14-105 (458)
123 PRK13938 phosphoheptose isomer 49.6 2.7E+02 0.0059 28.2 12.1 36 493-528 128-163 (196)
124 PLN02828 formyltetrahydrofolat 49.5 65 0.0014 34.4 7.9 73 456-529 73-154 (268)
125 TIGR02371 ala_DH_arch alanine 49.5 1.2E+02 0.0025 33.0 10.1 98 447-547 118-225 (325)
126 COG2987 HutU Urocanate hydrata 49.3 1.1E+02 0.0024 35.2 9.8 112 375-490 217-370 (561)
127 PRK05647 purN phosphoribosylgl 48.9 76 0.0017 32.2 8.1 76 457-535 5-94 (200)
128 PRK05958 8-amino-7-oxononanoat 48.7 3.6E+02 0.0078 28.7 14.1 100 452-561 97-203 (385)
129 PLN03209 translocon at the inn 48.7 60 0.0013 38.3 8.1 111 453-566 78-209 (576)
130 PLN02331 phosphoribosylglycina 48.7 87 0.0019 32.1 8.5 74 457-534 3-91 (207)
131 COG3109 ProQ Activator of osmo 48.6 25 0.00055 35.4 4.3 25 197-221 103-127 (208)
132 cd01972 Nitrogenase_VnfE_like 48.6 4.3E+02 0.0093 29.7 14.7 107 440-562 280-399 (426)
133 PLN02778 3,5-epimerase/4-reduc 48.5 67 0.0015 33.9 8.0 25 540-564 86-110 (298)
134 TIGR01328 met_gam_lyase methio 48.1 2.1E+02 0.0047 31.6 12.1 98 457-562 77-180 (391)
135 PRK07568 aspartate aminotransf 47.9 1.7E+02 0.0037 31.7 11.1 95 453-561 87-200 (397)
136 PRK06234 methionine gamma-lyas 47.6 1.9E+02 0.0041 32.1 11.6 98 456-561 81-186 (400)
137 PRK08056 threonine-phosphate d 47.5 1.7E+02 0.0038 31.4 11.1 94 452-561 70-180 (356)
138 cd06450 DOPA_deC_like DOPA dec 47.5 3.4E+02 0.0074 28.5 13.1 101 455-562 58-184 (345)
139 COG1104 NifS Cysteine sulfinat 47.5 88 0.0019 35.2 8.8 103 453-562 60-177 (386)
140 PRK07503 methionine gamma-lyas 47.4 2.1E+02 0.0045 31.9 11.9 98 457-562 83-186 (403)
141 PRK09028 cystathionine beta-ly 47.3 1.8E+02 0.004 32.5 11.4 94 456-561 78-181 (394)
142 cd00287 ribokinase_pfkB_like r 47.1 57 0.0012 31.1 6.6 69 478-563 23-91 (196)
143 PF05368 NmrA: NmrA-like famil 47.0 84 0.0018 31.4 8.1 98 458-564 1-102 (233)
144 TIGR01977 am_tr_V_EF2568 cyste 46.9 3.7E+02 0.0081 28.6 13.5 99 456-561 64-172 (376)
145 PRK13479 2-aminoethylphosphona 46.5 2.9E+02 0.0064 29.5 12.6 100 456-562 57-167 (368)
146 cd00615 Orn_deC_like Ornithine 46.4 2.2E+02 0.0047 29.9 11.3 96 456-562 76-189 (294)
147 PRK15116 sulfur acceptor prote 46.4 2.3E+02 0.005 30.3 11.5 117 443-570 19-161 (268)
148 TIGR01019 sucCoAalpha succinyl 46.3 1.1E+02 0.0023 33.0 9.0 104 456-561 65-172 (286)
149 PRK09295 bifunctional cysteine 46.2 2.6E+02 0.0056 30.6 12.3 101 455-561 86-199 (406)
150 PRK14012 cysteine desulfurase; 46.0 4.4E+02 0.0095 28.9 14.6 101 456-561 68-179 (404)
151 cd00609 AAT_like Aspartate ami 46.0 1.1E+02 0.0023 31.7 8.9 103 454-563 59-172 (350)
152 PF10087 DUF2325: Uncharacteri 45.9 1.1E+02 0.0023 27.1 7.7 59 497-562 15-81 (97)
153 TIGR03538 DapC_gpp succinyldia 45.8 1.7E+02 0.0036 31.9 10.7 93 456-560 92-202 (393)
154 PF13090 PP_kinase_C: Polyphos 44.7 20 0.00044 39.6 3.3 49 462-512 48-99 (352)
155 PF05159 Capsule_synth: Capsul 44.6 1.2E+02 0.0027 31.4 9.1 93 457-566 131-228 (269)
156 cd06436 GlcNAc-1-P_transferase 44.6 82 0.0018 30.5 7.4 31 458-488 3-33 (191)
157 PF02142 MGS: MGS-like domain 44.6 33 0.00072 30.2 4.2 77 469-560 4-94 (95)
158 TIGR03539 DapC_actino succinyl 44.5 1.2E+02 0.0026 32.6 9.2 94 452-561 78-180 (357)
159 PLN02206 UDP-glucuronate decar 43.6 95 0.0021 35.1 8.6 108 454-565 118-234 (442)
160 PF01053 Cys_Met_Meta_PP: Cys/ 43.4 2E+02 0.0043 32.2 11.0 103 452-561 67-176 (386)
161 PLN02656 tyrosine transaminase 43.2 2.5E+02 0.0054 31.0 11.7 97 452-561 94-207 (409)
162 TIGR03590 PseG pseudaminic aci 43.1 2.7E+02 0.0059 29.2 11.5 91 456-564 172-268 (279)
163 COG1091 RfbD dTDP-4-dehydrorha 43.0 78 0.0017 34.1 7.4 95 458-571 3-107 (281)
164 PF02595 Gly_kinase: Glycerate 43.0 13 0.00027 41.6 1.5 63 493-569 267-329 (377)
165 TIGR03537 DapC succinyldiamino 42.9 2.3E+02 0.0049 30.4 11.0 98 452-561 57-174 (350)
166 PLN02683 pyruvate dehydrogenas 42.4 89 0.0019 34.5 8.0 61 498-563 247-319 (356)
167 PF04016 DUF364: Domain of unk 42.3 63 0.0014 31.2 6.0 99 452-575 8-107 (147)
168 PRK07504 O-succinylhomoserine 41.9 2.8E+02 0.0062 30.7 11.9 96 458-561 84-185 (398)
169 PRK05967 cystathionine beta-ly 41.8 2.7E+02 0.0058 31.3 11.6 98 456-561 81-184 (395)
170 CHL00144 odpB pyruvate dehydro 41.4 90 0.0019 34.1 7.7 69 496-569 218-298 (327)
171 PLN02187 rooty/superroot1 41.4 2.7E+02 0.0058 31.6 11.8 103 452-561 129-242 (462)
172 TIGR02326 transamin_PhnW 2-ami 41.4 3.8E+02 0.0081 28.7 12.5 99 457-562 57-165 (363)
173 PRK08175 aminotransferase; Val 40.9 75 0.0016 34.7 7.1 92 456-561 93-202 (395)
174 PRK05939 hypothetical protein; 40.9 3E+02 0.0064 30.7 11.8 94 456-561 64-166 (397)
175 TIGR01324 cysta_beta_ly_B cyst 40.9 2.9E+02 0.0063 30.5 11.7 94 456-561 67-170 (377)
176 PRK13011 formyltetrahydrofolat 40.6 84 0.0018 33.7 7.2 50 456-511 92-143 (286)
177 PRK15482 transcriptional regul 40.1 4.4E+02 0.0095 27.6 12.5 43 488-530 192-234 (285)
178 cd01973 Nitrogenase_VFe_beta_l 40.0 6.2E+02 0.013 28.9 16.6 150 394-566 258-410 (454)
179 TIGR02080 O_succ_thio_ly O-suc 39.9 3.3E+02 0.0071 30.1 11.9 98 456-561 68-171 (382)
180 PF03709 OKR_DC_1_N: Orn/Lys/A 39.9 36 0.00079 31.2 3.8 67 495-566 7-77 (115)
181 PRK08861 cystathionine gamma-s 39.8 2.2E+02 0.0049 31.7 10.7 98 456-561 70-173 (388)
182 PRK12320 hypothetical protein; 39.6 56 0.0012 39.4 6.3 99 457-565 2-103 (699)
183 PF04392 ABC_sub_bind: ABC tra 39.6 18 0.00039 38.1 2.0 39 521-566 183-221 (294)
184 PRK08618 ornithine cyclodeamin 39.5 2.4E+02 0.0052 30.5 10.6 90 454-546 126-223 (325)
185 PRK08045 cystathionine gamma-s 39.5 3E+02 0.0066 30.5 11.6 98 456-561 69-172 (386)
186 PRK08249 cystathionine gamma-s 39.4 3E+02 0.0065 30.6 11.6 98 456-561 81-184 (398)
187 TIGR03705 poly_P_kin polyphosp 39.2 75 0.0016 38.2 7.2 50 462-512 369-420 (672)
188 PRK07050 cystathionine beta-ly 39.2 3.9E+02 0.0084 29.7 12.4 98 456-561 82-185 (394)
189 COG2242 CobL Precorrin-6B meth 39.0 1.1E+02 0.0023 31.2 7.2 88 451-551 31-123 (187)
190 PRK09411 carbamate kinase; Rev 39.0 79 0.0017 34.4 6.7 59 447-507 35-98 (297)
191 PRK08114 cystathionine beta-ly 38.7 1.5E+02 0.0031 33.4 9.0 100 452-561 74-184 (395)
192 PRK11302 DNA-binding transcrip 38.7 4.3E+02 0.0093 27.4 12.0 46 483-529 180-225 (284)
193 CHL00194 ycf39 Ycf39; Provisio 38.7 1.3E+02 0.0027 31.9 8.2 102 457-565 2-110 (317)
194 TIGR01976 am_tr_V_VC1184 cyste 38.5 5.4E+02 0.012 27.8 14.9 16 546-561 176-191 (397)
195 PF00582 Usp: Universal stress 38.4 2.6E+02 0.0056 24.1 10.7 38 522-562 102-139 (140)
196 PRK08462 biotin carboxylase; V 38.3 60 0.0013 36.3 6.0 80 456-537 5-91 (445)
197 cd01974 Nitrogenase_MoFe_beta 38.2 6.3E+02 0.014 28.5 16.0 94 454-563 302-402 (435)
198 PRK10481 hypothetical protein; 38.2 3.8E+02 0.0082 28.0 11.3 85 471-561 122-211 (224)
199 PTZ00187 succinyl-CoA syntheta 38.1 1.3E+02 0.0028 33.0 8.2 103 456-562 90-199 (317)
200 PRK12767 carbamoyl phosphate s 38.0 43 0.00094 35.3 4.6 41 457-498 3-43 (326)
201 PF04413 Glycos_transf_N: 3-De 37.9 1E+02 0.0022 30.8 7.0 95 456-564 22-126 (186)
202 PRK13527 glutamine amidotransf 37.5 75 0.0016 31.7 6.0 83 481-568 3-89 (200)
203 PF05185 PRMT5: PRMT5 arginine 37.4 1.1E+02 0.0024 34.9 7.9 71 455-527 187-263 (448)
204 PRK06836 aspartate aminotransf 37.3 3.2E+02 0.0069 29.9 11.3 103 452-561 94-212 (394)
205 PRK07550 hypothetical protein; 37.2 2.7E+02 0.0059 30.1 10.7 102 452-561 88-201 (386)
206 PRK07765 para-aminobenzoate sy 37.2 1.6E+02 0.0034 30.0 8.3 79 482-566 2-86 (214)
207 PF00148 Oxidored_nitro: Nitro 36.8 6E+02 0.013 27.8 17.0 106 440-563 258-366 (398)
208 PRK06108 aspartate aminotransf 36.7 3.1E+02 0.0067 29.4 10.9 96 452-561 82-196 (382)
209 PRK06084 O-acetylhomoserine am 36.6 2.5E+02 0.0054 31.6 10.5 98 456-561 75-178 (425)
210 PRK00451 glycine dehydrogenase 36.3 4.9E+02 0.011 28.9 12.7 99 456-562 131-239 (447)
211 PF02844 GARS_N: Phosphoribosy 36.3 1.3E+02 0.0029 27.5 6.8 83 457-560 2-90 (100)
212 PRK12655 fructose-6-phosphate 36.3 3E+02 0.0065 28.6 10.2 97 464-567 62-168 (220)
213 PRK10537 voltage-gated potassi 36.2 6.2E+02 0.013 28.5 13.4 93 455-566 240-339 (393)
214 PRK03244 argD acetylornithine 36.1 3.9E+02 0.0085 29.0 11.8 101 456-561 105-222 (398)
215 PRK07178 pyruvate carboxylase 36.1 55 0.0012 37.2 5.3 81 456-536 3-87 (472)
216 PRK09147 succinyldiaminopimela 35.6 2.6E+02 0.0057 30.4 10.3 93 456-560 92-203 (396)
217 cd00757 ThiF_MoeB_HesA_family 35.5 2.1E+02 0.0046 29.2 8.9 109 444-563 11-143 (228)
218 PRK00377 cbiT cobalt-precorrin 35.4 1.5E+02 0.0033 29.3 7.7 76 451-529 37-118 (198)
219 PRK14101 bifunctional glucokin 35.3 3.5E+02 0.0076 32.1 11.9 83 445-528 458-564 (638)
220 TIGR03458 YgfH_subfam succinat 35.3 2.8E+02 0.0061 32.2 10.7 117 446-563 6-156 (485)
221 TIGR02356 adenyl_thiF thiazole 35.3 3.4E+02 0.0073 27.3 10.2 109 444-563 11-143 (202)
222 COG0373 HemA Glutamyl-tRNA red 35.3 1.3E+02 0.0028 34.2 7.9 72 454-532 177-248 (414)
223 PRK05994 O-acetylhomoserine am 35.2 3.8E+02 0.0083 30.1 11.7 96 457-561 81-183 (427)
224 PRK13789 phosphoribosylamine-- 35.1 69 0.0015 36.1 5.8 77 456-537 5-83 (426)
225 PRK06348 aspartate aminotransf 35.1 2.6E+02 0.0057 30.3 10.2 95 452-560 87-199 (384)
226 PRK03369 murD UDP-N-acetylmura 35.1 2.3E+02 0.005 32.4 10.1 91 452-561 9-99 (488)
227 TIGR01825 gly_Cac_T_rel pyrido 34.8 3.9E+02 0.0085 28.6 11.4 95 458-561 97-198 (385)
228 PLN02591 tryptophan synthase 34.6 4.5E+02 0.0096 27.8 11.3 102 456-562 81-195 (250)
229 PRK05764 aspartate aminotransf 34.6 3.1E+02 0.0067 29.6 10.6 96 452-561 89-202 (393)
230 PRK12414 putative aminotransfe 34.5 4.2E+02 0.0092 28.8 11.7 93 455-561 91-200 (384)
231 PRK07681 aspartate aminotransf 34.4 2.7E+02 0.0059 30.4 10.2 98 455-560 94-203 (399)
232 PRK08064 cystathionine beta-ly 34.1 5.7E+02 0.012 28.2 12.7 97 457-562 72-174 (390)
233 PRK08912 hypothetical protein; 33.9 4.5E+02 0.0098 28.5 11.7 91 456-560 89-196 (387)
234 PRK05234 mgsA methylglyoxal sy 33.7 2.9E+02 0.0063 26.6 9.0 87 469-566 21-116 (142)
235 PRK07324 transaminase; Validat 33.7 2.2E+02 0.0048 30.9 9.3 103 452-561 78-191 (373)
236 PRK07688 thiamine/molybdopteri 33.7 4.2E+02 0.0092 29.0 11.4 109 444-563 14-148 (339)
237 smart00851 MGS MGS-like domain 33.6 2.5E+02 0.0055 24.2 7.9 78 469-560 4-89 (90)
238 PRK07777 aminotransferase; Val 33.6 4.9E+02 0.011 28.2 11.9 50 456-511 87-136 (387)
239 PRK13566 anthranilate synthase 33.5 1.4E+02 0.0031 36.2 8.4 80 478-564 524-606 (720)
240 PRK08363 alanine aminotransfer 33.2 2.1E+02 0.0046 31.1 9.1 53 453-511 92-144 (398)
241 TIGR00858 bioF 8-amino-7-oxono 32.9 5.5E+02 0.012 26.9 11.9 93 456-561 78-181 (360)
242 PRK09982 universal stress prot 32.6 4E+02 0.0088 24.6 10.1 51 506-562 82-137 (142)
243 TIGR01133 murG undecaprenyldip 32.6 4.2E+02 0.0091 27.6 10.9 54 496-563 223-277 (348)
244 PRK06225 aspartate aminotransf 32.5 3.2E+02 0.0069 29.5 10.3 100 453-562 82-196 (380)
245 PRK08247 cystathionine gamma-s 32.5 6.1E+02 0.013 27.6 12.5 96 457-566 70-175 (366)
246 TIGR02429 pcaI_scoA_fam 3-oxoa 32.5 3.3E+02 0.0071 28.3 9.8 97 447-562 11-122 (222)
247 PF01113 DapB_N: Dihydrodipico 32.4 78 0.0017 29.3 4.8 96 457-566 2-101 (124)
248 PRK06141 ornithine cyclodeamin 32.4 3.5E+02 0.0077 29.1 10.5 90 454-546 124-221 (314)
249 cd06452 SepCysS Sep-tRNA:Cys-t 32.4 5.4E+02 0.012 27.6 11.9 98 455-562 60-175 (361)
250 PLN02242 methionine gamma-lyas 32.3 3.9E+02 0.0085 30.0 11.2 99 456-561 93-198 (418)
251 PRK05957 aspartate aminotransf 32.2 4E+02 0.0086 29.1 11.0 93 455-561 90-198 (389)
252 cd00956 Transaldolase_FSA Tran 32.2 5.7E+02 0.012 26.1 12.1 72 493-567 89-166 (211)
253 TIGR03609 S_layer_CsaB polysac 32.2 1.3E+02 0.0028 31.5 7.0 52 515-566 57-109 (298)
254 PRK08762 molybdopterin biosynt 32.1 5.9E+02 0.013 28.1 12.3 109 444-563 125-257 (376)
255 PLN00143 tyrosine/nicotianamin 31.9 5.9E+02 0.013 28.1 12.4 107 441-561 80-208 (409)
256 PRK05562 precorrin-2 dehydroge 31.9 2.9E+02 0.0062 28.8 9.2 95 454-564 24-118 (223)
257 TIGR03693 ocin_ThiF_like putat 31.7 5.9E+02 0.013 30.7 12.6 99 454-560 128-235 (637)
258 PRK11892 pyruvate dehydrogenas 31.6 2.6E+02 0.0057 32.2 9.7 67 495-566 356-434 (464)
259 TIGR01264 tyr_amTase_E tyrosin 31.5 3.5E+02 0.0076 29.5 10.4 96 452-561 93-206 (401)
260 PRK15005 universal stress prot 31.5 1.4E+02 0.003 27.2 6.3 36 522-562 107-143 (144)
261 PRK08960 hypothetical protein; 31.4 2.9E+02 0.0064 29.9 9.8 96 452-561 90-203 (387)
262 PF06574 FAD_syn: FAD syntheta 31.3 3E+02 0.0066 26.8 8.9 105 455-563 5-144 (157)
263 COG1648 CysG Siroheme synthase 31.3 1.2E+02 0.0027 31.0 6.4 94 454-563 11-104 (210)
264 PRK06939 2-amino-3-ketobutyrat 31.3 1.7E+02 0.0036 31.4 7.8 28 538-566 182-213 (397)
265 PRK02705 murD UDP-N-acetylmura 31.3 2.9E+02 0.0062 30.9 9.9 71 458-530 3-76 (459)
266 cd01491 Ube1_repeat1 Ubiquitin 31.2 3.1E+02 0.0067 29.6 9.6 109 444-563 9-137 (286)
267 PLN02214 cinnamoyl-CoA reducta 31.1 3.4E+02 0.0073 29.1 10.1 108 454-563 9-125 (342)
268 PLN00175 aminotransferase fami 31.1 6E+02 0.013 28.1 12.3 91 456-560 117-224 (413)
269 cd05006 SIS_GmhA Phosphoheptos 30.8 5E+02 0.011 25.1 11.9 46 485-530 108-153 (177)
270 cd00613 GDC-P Glycine cleavage 30.8 6.6E+02 0.014 27.0 12.4 99 456-561 83-194 (398)
271 COG0451 WcaG Nucleoside-diphos 30.8 1.2E+02 0.0025 31.2 6.2 100 458-565 3-116 (314)
272 PRK10116 universal stress prot 30.7 4.1E+02 0.0088 24.0 10.1 36 522-562 102-137 (142)
273 PRK05690 molybdopterin biosynt 30.7 6.3E+02 0.014 26.2 12.1 109 444-562 22-153 (245)
274 PLN02855 Bifunctional selenocy 30.6 6.4E+02 0.014 27.8 12.4 102 455-562 95-209 (424)
275 cd05212 NAD_bind_m-THF_DH_Cycl 30.4 2.3E+02 0.0051 27.2 7.8 43 488-530 35-79 (140)
276 cd06433 GT_2_WfgS_like WfgS an 30.4 3.9E+02 0.0084 24.8 9.3 46 458-503 4-50 (202)
277 PRK08361 aspartate aminotransf 30.3 4.5E+02 0.0098 28.5 11.0 103 452-561 91-204 (391)
278 cd02525 Succinoglycan_BP_ExoA 30.2 1.7E+02 0.0038 28.6 7.1 54 458-511 6-62 (249)
279 PRK11242 DNA-binding transcrip 30.1 6.1E+02 0.013 25.9 13.1 138 381-533 18-165 (296)
280 PRK09288 purT phosphoribosylgl 30.1 86 0.0019 34.2 5.4 72 455-533 12-86 (395)
281 PRK07340 ornithine cyclodeamin 30.0 3.9E+02 0.0084 28.7 10.2 89 454-546 124-219 (304)
282 PRK06767 methionine gamma-lyas 29.9 5.3E+02 0.012 28.4 11.6 98 456-561 78-181 (386)
283 PLN00145 tyrosine/nicotianamin 29.9 2.2E+02 0.0047 31.9 8.6 96 452-561 115-228 (430)
284 TIGR03217 4OH_2_O_val_ald 4-hy 29.8 2.4E+02 0.0053 30.9 8.8 60 457-516 105-167 (333)
285 PRK15456 universal stress prot 29.8 1.4E+02 0.0031 27.4 6.1 37 522-562 105-141 (142)
286 COG0074 SucD Succinyl-CoA synt 29.7 2.4E+02 0.0052 30.7 8.3 104 456-561 67-174 (293)
287 PRK00207 sulfur transfer compl 29.7 1.6E+02 0.0035 27.7 6.4 72 483-566 4-82 (128)
288 PRK05784 phosphoribosylamine-- 29.6 65 0.0014 37.1 4.5 77 457-534 2-81 (486)
289 PRK06207 aspartate aminotransf 29.6 6.1E+02 0.013 27.9 12.0 93 455-561 103-216 (405)
290 PRK07366 succinyldiaminopimela 29.5 3.9E+02 0.0085 28.9 10.4 51 456-512 94-144 (388)
291 PTZ00182 3-methyl-2-oxobutanat 29.4 3.2E+02 0.0068 30.3 9.6 48 516-568 278-329 (355)
292 PRK06460 hypothetical protein; 29.3 6.5E+02 0.014 27.6 12.1 58 500-561 104-165 (376)
293 PRK07589 ornithine cyclodeamin 29.0 4.7E+02 0.01 28.9 10.8 99 446-547 118-228 (346)
294 PF00411 Ribosomal_S11: Riboso 28.9 1.6E+02 0.0035 27.1 6.2 47 465-514 47-95 (110)
295 PRK05597 molybdopterin biosynt 28.8 8.1E+02 0.018 27.0 12.7 110 444-563 18-150 (355)
296 PRK08636 aspartate aminotransf 28.6 5E+02 0.011 28.5 11.0 99 456-561 97-213 (403)
297 cd00611 PSAT_like Phosphoserin 28.6 6.4E+02 0.014 27.3 11.7 96 455-563 63-170 (355)
298 PRK00726 murG undecaprenyldiph 28.5 6.1E+02 0.013 26.8 11.5 93 455-564 183-280 (357)
299 PRK02090 phosphoadenosine phos 28.2 3.1E+02 0.0067 28.3 8.8 66 444-513 31-101 (241)
300 PLN02509 cystathionine beta-ly 28.0 5.6E+02 0.012 29.5 11.5 92 457-561 151-252 (464)
301 PRK07671 cystathionine beta-ly 27.9 6.5E+02 0.014 27.7 11.8 94 459-561 69-169 (377)
302 TIGR01110 mdcA malonate decarb 27.7 6.8E+02 0.015 29.6 12.0 122 440-565 26-183 (543)
303 cd01483 E1_enzyme_family Super 27.7 3.9E+02 0.0085 24.8 8.7 97 458-564 2-122 (143)
304 PF13685 Fe-ADH_2: Iron-contai 27.7 40 0.00087 35.5 2.2 71 492-566 33-109 (250)
305 PRK08591 acetyl-CoA carboxylas 27.6 1.6E+02 0.0036 32.8 7.2 80 456-537 3-89 (451)
306 PF08659 KR: KR domain; Inter 27.6 5.3E+02 0.012 25.0 10.0 106 458-565 3-136 (181)
307 TIGR03812 tyr_de_CO2_Arch tyro 27.5 7.5E+02 0.016 26.3 12.0 100 454-562 76-189 (373)
308 PRK01362 putative translaldola 27.3 2.8E+02 0.0061 28.6 8.2 94 467-566 63-165 (214)
309 PLN02695 GDP-D-mannose-3',5'-e 27.2 2.8E+02 0.0061 30.3 8.7 107 451-565 17-137 (370)
310 PRK12656 fructose-6-phosphate 27.0 4.7E+02 0.01 27.2 9.8 63 467-535 66-132 (222)
311 COG2014 Uncharacterized conser 26.9 47 0.001 34.6 2.4 95 448-570 106-204 (250)
312 PF00670 AdoHcyase_NAD: S-aden 26.8 3.5E+02 0.0076 26.9 8.4 69 448-528 16-84 (162)
313 TIGR02931 anfK_nitrog Fe-only 26.8 1E+03 0.022 27.3 14.9 108 443-563 301-413 (461)
314 cd01965 Nitrogenase_MoFe_beta_ 26.7 9.4E+02 0.02 26.9 16.4 96 454-563 298-396 (428)
315 PRK15029 arginine decarboxylas 26.7 2.5E+02 0.0055 34.4 8.8 83 482-567 2-96 (755)
316 PRK12727 flagellar biosynthesi 26.6 1.1E+03 0.025 27.9 14.8 84 450-533 345-439 (559)
317 PRK14478 nitrogenase molybdenu 26.5 1E+03 0.022 27.3 14.2 113 429-562 300-417 (475)
318 TIGR01214 rmlD dTDP-4-dehydror 26.5 1.8E+02 0.0039 29.7 6.8 26 540-565 76-101 (287)
319 TIGR01426 MGT glycosyltransfer 26.4 1.8E+02 0.0038 31.6 7.0 32 529-566 92-123 (392)
320 PRK12771 putative glutamate sy 26.4 5.1E+02 0.011 30.1 11.1 78 452-531 134-231 (564)
321 TIGR01822 2am3keto_CoA 2-amino 26.3 2.9E+02 0.0062 29.8 8.6 16 546-561 190-205 (393)
322 cd01979 Pchlide_reductase_N Pc 26.2 1.8E+02 0.0039 32.3 7.1 90 464-562 138-229 (396)
323 PRK07179 hypothetical protein; 26.0 6.2E+02 0.013 27.7 11.2 97 455-561 115-216 (407)
324 COG0707 MurG UDP-N-acetylgluco 26.0 3.6E+02 0.0078 29.9 9.3 96 454-566 182-282 (357)
325 TIGR01814 kynureninase kynuren 25.8 6.7E+02 0.015 27.4 11.5 105 454-561 86-206 (406)
326 PRK08776 cystathionine gamma-s 25.8 8E+02 0.017 27.4 12.1 98 456-561 77-180 (405)
327 PRK09136 5'-methylthioadenosin 25.7 2.9E+02 0.0062 29.1 8.1 74 459-564 127-204 (245)
328 KOG0189 Phosphoadenosine phosp 25.7 1.6E+02 0.0036 30.7 6.0 73 441-515 34-110 (261)
329 PF08032 SpoU_sub_bind: RNA 2' 25.6 1.9E+02 0.0041 23.8 5.6 51 470-520 7-58 (76)
330 PF13580 SIS_2: SIS domain; PD 25.6 1.7E+02 0.0036 27.5 5.8 28 452-479 101-131 (138)
331 TIGR00655 PurU formyltetrahydr 25.6 2.4E+02 0.0053 30.2 7.7 52 456-513 87-140 (280)
332 PRK06027 purU formyltetrahydro 25.5 2.1E+02 0.0045 30.7 7.2 51 456-512 92-144 (286)
333 PRK09082 methionine aminotrans 25.5 7.2E+02 0.016 27.0 11.5 92 456-561 93-201 (386)
334 TIGR00746 arcC carbamate kinas 25.5 4.4E+02 0.0096 28.7 9.7 29 444-472 31-60 (310)
335 COG0520 csdA Selenocysteine ly 25.4 1E+03 0.022 26.8 12.9 95 455-561 85-197 (405)
336 PRK09191 two-component respons 25.3 6.1E+02 0.013 25.3 10.3 92 466-564 120-218 (261)
337 PRK11543 gutQ D-arabinose 5-ph 25.0 8.4E+02 0.018 25.8 12.7 38 492-529 103-140 (321)
338 cd00640 Trp-synth-beta_II Tryp 24.9 5.4E+02 0.012 26.1 9.8 56 455-514 50-105 (244)
339 COG0031 CysK Cysteine synthase 24.9 1.8E+02 0.0038 31.8 6.5 177 345-531 70-265 (300)
340 PRK09148 aminotransferase; Val 24.6 3.8E+02 0.0083 29.4 9.3 97 456-560 94-202 (405)
341 PF05690 ThiG: Thiazole biosyn 24.6 35 0.00075 36.0 1.1 83 450-537 118-205 (247)
342 PF07046 CRA_rpt: Cytoplasmic 24.6 82 0.0018 24.4 2.7 27 191-217 3-29 (42)
343 cd01423 MGS_CPS_I_III Methylgl 24.6 95 0.0021 28.2 3.8 88 457-562 3-107 (116)
344 cd01980 Chlide_reductase_Y Chl 24.5 9.6E+02 0.021 26.9 12.5 112 431-564 260-376 (416)
345 CHL00162 thiG thiamin biosynth 24.5 77 0.0017 33.9 3.6 92 448-545 130-226 (267)
346 PRK13010 purU formyltetrahydro 24.5 2.7E+02 0.0058 30.0 7.8 51 456-512 96-148 (289)
347 PF13241 NAD_binding_7: Putati 24.5 1.1E+02 0.0023 27.4 4.1 87 454-563 6-92 (103)
348 PRK14852 hypothetical protein; 24.4 8.4E+02 0.018 31.1 12.7 130 426-564 304-457 (989)
349 PRK13143 hisH imidazole glycer 24.4 3.2E+02 0.007 27.3 7.9 70 495-569 14-84 (200)
350 PRK02472 murD UDP-N-acetylmura 24.3 5.1E+02 0.011 28.8 10.3 92 454-560 4-96 (447)
351 cd01748 GATase1_IGP_Synthase T 24.3 2.1E+02 0.0047 28.3 6.6 70 496-568 13-83 (198)
352 PLN02166 dTDP-glucose 4,6-dehy 24.1 2.7E+02 0.0059 31.4 8.1 106 455-564 120-234 (436)
353 PRK09257 aromatic amino acid a 24.1 7.9E+02 0.017 26.8 11.6 98 458-561 98-210 (396)
354 COG0608 RecJ Single-stranded D 24.1 3.1E+02 0.0067 31.5 8.7 83 444-531 25-122 (491)
355 PRK05942 aspartate aminotransf 24.1 4.9E+02 0.011 28.4 9.9 99 456-561 99-208 (394)
356 TIGR03540 DapC_direct LL-diami 23.9 6.7E+02 0.015 27.0 10.9 96 455-560 92-201 (383)
357 COG0626 MetC Cystathionine bet 23.8 9E+02 0.019 27.5 11.9 98 452-556 75-179 (396)
358 cd01996 Alpha_ANH_like_III Thi 23.8 6E+02 0.013 23.7 10.0 101 456-564 3-110 (154)
359 TIGR00853 pts-lac PTS system, 23.8 1.1E+02 0.0024 27.4 4.0 58 498-564 24-83 (95)
360 cd06442 DPM1_like DPM1_like re 23.7 2.5E+02 0.0054 27.2 6.8 21 469-489 43-63 (224)
361 PRK06176 cystathionine gamma-s 23.5 9E+02 0.02 26.7 11.9 96 457-561 68-169 (380)
362 TIGR03499 FlhF flagellar biosy 23.5 9E+02 0.019 25.6 16.1 76 453-528 192-278 (282)
363 TIGR03492 conserved hypothetic 23.4 8.4E+02 0.018 27.1 11.7 34 515-563 289-322 (396)
364 TIGR00875 fsa_talC_mipB fructo 23.3 7.7E+02 0.017 25.4 10.5 66 464-535 60-128 (213)
365 PRK06358 threonine-phosphate d 23.3 5.7E+02 0.012 27.5 10.2 101 452-561 69-179 (354)
366 TIGR01142 purT phosphoribosylg 23.3 2.1E+02 0.0045 31.0 6.8 72 457-534 1-74 (380)
367 PRK07269 cystathionine gamma-s 23.3 7.4E+02 0.016 27.2 11.1 98 456-562 71-172 (364)
368 PRK08063 enoyl-(acyl carrier p 23.2 4E+02 0.0086 26.4 8.4 97 455-554 4-126 (250)
369 PLN00203 glutamyl-tRNA reducta 23.0 4.6E+02 0.0099 30.7 9.8 72 455-530 266-337 (519)
370 COG0569 TrkA K+ transport syst 23.0 3.1E+02 0.0067 28.2 7.6 17 546-562 81-98 (225)
371 COG0075 Serine-pyruvate aminot 22.9 1.1E+03 0.025 26.6 12.6 102 454-563 55-168 (383)
372 PRK07523 gluconate 5-dehydroge 22.9 5E+02 0.011 25.9 9.1 108 454-565 9-146 (255)
373 PRK12354 carbamate kinase; Rev 22.9 2.2E+02 0.0047 31.2 6.7 56 444-500 31-90 (307)
374 PRK00885 phosphoribosylamine-- 22.8 2E+02 0.0042 32.0 6.6 70 457-533 2-73 (420)
375 COG0549 ArcC Carbamate kinase 22.8 1.7E+02 0.0036 32.0 5.7 61 445-507 32-105 (312)
376 PRK01372 ddl D-alanine--D-alan 22.8 2.6E+02 0.0057 29.2 7.3 39 493-531 24-65 (304)
377 PRK13937 phosphoheptose isomer 22.8 7.5E+02 0.016 24.4 12.8 34 495-528 123-156 (188)
378 TIGR00215 lpxB lipid-A-disacch 22.8 1E+03 0.023 26.1 12.2 43 505-563 251-293 (385)
379 PRK13392 5-aminolevulinate syn 22.7 1E+03 0.022 26.0 14.0 64 500-567 148-218 (410)
380 cd01080 NAD_bind_m-THF_DH_Cycl 22.7 4.8E+02 0.01 25.7 8.6 52 454-530 43-95 (168)
381 PRK14571 D-alanyl-alanine synt 22.7 1.8E+02 0.0039 30.6 6.0 42 493-534 20-65 (299)
382 PF08484 Methyltransf_14: C-me 22.6 1.7E+02 0.0038 28.7 5.4 58 439-497 52-109 (160)
383 PRK08644 thiamine biosynthesis 22.5 8.3E+02 0.018 24.8 11.1 110 444-564 18-151 (212)
384 cd04185 GT_2_like_b Subfamily 22.4 4.2E+02 0.0091 25.3 8.1 45 457-501 2-47 (202)
385 PRK13111 trpA tryptophan synth 22.4 9.4E+02 0.02 25.4 12.1 101 456-562 92-206 (258)
386 COG2022 ThiG Uncharacterized e 22.3 64 0.0014 34.1 2.4 85 450-538 125-213 (262)
387 cd05013 SIS_RpiR RpiR-like pro 22.3 5.5E+02 0.012 22.7 8.9 39 491-529 73-111 (139)
388 PRK07682 hypothetical protein; 22.2 7.8E+02 0.017 26.5 10.9 51 455-511 82-132 (378)
389 TIGR03542 DAPAT_plant LL-diami 22.1 3.7E+02 0.0079 29.5 8.5 102 452-561 93-211 (402)
390 TIGR01279 DPOR_bchN light-inde 22.1 1.1E+03 0.024 26.3 13.4 60 495-563 168-228 (407)
391 cd02522 GT_2_like_a GT_2_like_ 22.1 6.3E+02 0.014 24.2 9.3 40 458-497 5-45 (221)
392 KOG1549 Cysteine desulfurase N 22.1 1.2E+03 0.027 26.7 13.7 104 455-561 103-216 (428)
393 cd01485 E1-1_like Ubiquitin ac 22.0 8.1E+02 0.018 24.5 11.1 109 444-563 9-145 (198)
394 PRK02842 light-independent pro 21.8 5.1E+02 0.011 29.2 9.7 59 495-563 181-240 (427)
395 TIGR01265 tyr_nico_aTase tyros 21.8 5.7E+02 0.012 28.0 9.9 94 454-561 96-207 (403)
396 TIGR01963 PHB_DH 3-hydroxybuty 21.7 6.2E+02 0.013 25.0 9.4 104 456-563 2-135 (255)
397 PRK00770 deoxyhypusine synthas 21.7 1.4E+02 0.0031 33.5 5.2 111 453-564 50-196 (384)
398 KOG1000 Chromatin remodeling p 21.5 1.3E+03 0.028 27.5 12.5 75 454-528 491-568 (689)
399 PRK07337 aminotransferase; Val 21.5 6.5E+02 0.014 27.2 10.2 95 453-561 89-201 (388)
400 PRK13936 phosphoheptose isomer 21.5 8.2E+02 0.018 24.4 14.5 35 495-529 128-165 (197)
401 PF01380 SIS: SIS domain SIS d 21.4 1.8E+02 0.0039 25.9 5.0 40 491-530 66-105 (131)
402 PRK07505 hypothetical protein; 21.4 9.9E+02 0.021 26.1 11.7 101 456-561 107-214 (402)
403 TIGR03403 nifS_epsilon cystein 21.4 1E+03 0.022 25.5 13.5 102 454-561 60-175 (382)
404 PRK00414 gmhA phosphoheptose i 21.3 3.6E+02 0.0078 27.0 7.6 37 522-565 111-147 (192)
405 PRK06719 precorrin-2 dehydroge 21.2 3.6E+02 0.0077 26.2 7.3 90 454-563 12-101 (157)
406 PRK02910 light-independent pro 21.2 1.3E+03 0.029 26.7 18.3 92 454-563 292-387 (519)
407 cd04187 DPM1_like_bac Bacteria 21.1 3.9E+02 0.0083 25.1 7.4 46 458-503 3-52 (181)
408 COG0771 MurD UDP-N-acetylmuram 21.1 1.8E+02 0.0039 33.4 5.9 54 455-511 7-60 (448)
409 PF04951 Peptidase_M55: D-amin 21.1 1.2E+02 0.0027 32.4 4.3 39 531-571 124-162 (265)
410 PRK07454 short chain dehydroge 21.0 8.1E+02 0.017 24.1 10.2 74 454-530 5-91 (241)
411 PRK10444 UMP phosphatase; Prov 21.0 9.3E+02 0.02 25.0 10.8 37 469-507 24-60 (248)
412 PRK07811 cystathionine gamma-s 20.8 9E+02 0.019 26.7 11.2 97 458-562 80-182 (388)
413 PTZ00075 Adenosylhomocysteinas 20.8 9.2E+02 0.02 28.1 11.5 66 452-529 251-316 (476)
414 PF05673 DUF815: Protein of un 20.8 5E+02 0.011 27.7 8.7 57 456-514 53-114 (249)
415 PRK05600 thiamine biosynthesis 20.7 1.1E+03 0.024 26.2 11.8 108 444-562 31-162 (370)
416 PRK06290 aspartate aminotransf 20.7 7.2E+02 0.016 27.6 10.5 55 452-512 103-158 (410)
417 cd06502 TA_like Low-specificit 20.6 7.5E+02 0.016 25.8 10.2 102 454-561 47-164 (338)
418 PRK08287 cobalt-precorrin-6Y C 20.6 5.7E+02 0.012 24.8 8.7 74 452-529 29-104 (187)
419 PRK02006 murD UDP-N-acetylmura 20.6 5.7E+02 0.012 29.2 9.9 71 455-530 7-77 (498)
420 PRK07877 hypothetical protein; 20.5 8.3E+02 0.018 29.9 11.5 110 443-564 96-229 (722)
421 TIGR01694 MTAP 5'-deoxy-5'-met 20.5 4.8E+02 0.01 27.0 8.5 22 543-564 181-202 (241)
422 PRK12325 prolyl-tRNA synthetas 20.4 1.9E+02 0.004 32.8 5.9 63 462-524 315-395 (439)
423 PRK00414 gmhA phosphoheptose i 20.4 8.6E+02 0.019 24.3 13.4 37 492-528 125-161 (192)
424 cd04179 DPM_DPG-synthase_like 20.4 3.3E+02 0.0071 25.4 6.7 46 458-503 3-51 (185)
425 TIGR02434 CobF precorrin-6A sy 20.4 4.3E+02 0.0093 27.8 8.1 24 539-563 183-206 (249)
426 PRK06425 histidinol-phosphate 20.3 3E+02 0.0066 29.2 7.2 92 454-561 57-160 (332)
427 COG1001 AdeC Adenine deaminase 20.3 3.1E+02 0.0067 32.6 7.6 102 446-547 235-364 (584)
428 PLN02896 cinnamyl-alcohol dehy 20.2 9E+02 0.02 25.7 10.9 108 454-565 9-138 (353)
429 PRK06015 keto-hydroxyglutarate 20.2 4.7E+02 0.01 26.9 8.1 78 484-561 8-102 (201)
430 cd01743 GATase1_Anthranilate_S 20.1 2.3E+02 0.0049 27.7 5.7 65 496-566 13-81 (184)
431 PRK07878 molybdopterin biosynt 20.0 1.1E+03 0.024 26.3 11.7 108 444-562 32-163 (392)
432 PRK06111 acetyl-CoA carboxylas 20.0 1.8E+02 0.004 32.3 5.7 33 456-490 3-35 (450)
433 TIGR00762 DegV EDD domain prot 20.0 1.9E+02 0.0041 30.5 5.5 106 451-563 74-189 (275)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-109 Score=882.15 Aligned_cols=536 Identities=52% Similarity=0.810 Sum_probs=442.3
Q ss_pred CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhhhhhhccCCC
Q 006164 48 SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGS 123 (658)
Q Consensus 48 ~~~~~~~~~v~~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (658)
++.+|+++|+|||++| |.+|.+...+- ..+.....+..+ . +.+. ++...++..+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~-------~~~~--~p~~~t~s~~~-~--------- 74 (556)
T KOG1467|consen 15 DKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-E-------DKNA--EPKDLTASAKQ-A--------- 74 (556)
T ss_pred chhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-C-------cccc--Ccccccccccc-c---------
Confidence 4899999999999999 88888876441 001111111110 0 1111 11111111111 1
Q ss_pred cccccccccCCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCCcCCCCCCcceeeccccccCCCcchhhccHHHHHHH
Q 006164 124 SVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203 (658)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kAERRa~ 203 (658)
...+..++|.||+|+|...+++ .+ .++..+.+....+..+..+.+.|+||||++
T Consensus 75 ---~~~~~~s~~~~~~e~t~a~~a~---~~--------------------a~~s~~~~p~~~~~~ka~~~~~t~a~~~a~ 128 (556)
T KOG1467|consen 75 ---RVAVKASLPKGGAELTVANKAA---AA--------------------AGSSATQSPKKEKPPKAGLAVPTRAERKAI 128 (556)
T ss_pred ---ccchhhcccCCcceecccccch---hh--------------------hccccccCCcccCCcccccccccHHHHhhH
Confidence 1456789999999999773222 11 111223333344556778889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhhhcccCCCCCCCCCCC-CCCCCCccccccccCCCCCcccccccCCCCCCCcccCcHHHH
Q 006164 204 QEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRV 282 (658)
Q Consensus 204 QEaqRAaKaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~dd~~~~ 282 (658)
||++||+|+|+|++++........+.+.+......|. .|++.+..+ +..-+. ++.++++|.+|+++..+.
T Consensus 129 ~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p~~t------~~~~~~---~~~~~~~pq~q~kt~~~~ 199 (556)
T KOG1467|consen 129 QEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALPVTT------SVDQAL---KRRAVQNPQNQAKTLASA 199 (556)
T ss_pred HHHHHHHHHhhhcccccccccccccccCcccccCCCccccccccccc------cccchH---Hhhcccchhhhhhhhccc
Confidence 9999999999999986421111111111111111122 222211111 111111 577889999999888766
Q ss_pred HHhhhccccccccccCcccccccCCcceecccCcchhhhhhcccchhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHH
Q 006164 283 QKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI 362 (658)
Q Consensus 283 ~k~~r~~v~~~~~~~~~v~lf~hLP~~~~~~~l~~~~~~~~ai~~mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI 362 (658)
. +.|+.|+.+ ++.||+||||+.+.. ..|..+..|||||++||+||+.|+|+|+|+|||+||.+|+++|
T Consensus 200 ~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi 267 (556)
T KOG1467|consen 200 S-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVI 267 (556)
T ss_pred C-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHH
Confidence 5 778888765 899999999999875 2355666799999999999999999999999999999999999
Q ss_pred HhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 363 RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADR 442 (658)
Q Consensus 363 ~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~ 442 (658)
+||++|+++++.|+|..+|+.++.||.+|||++++|||||||||++|..++.++.+.|+|+.|++.|++||+|+|..|++
T Consensus 268 ~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~q 347 (556)
T KOG1467|consen 268 KDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQ 347 (556)
T ss_pred HhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhh
Q 006164 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~ 522 (658)
.|++++.++|+|||+|||||+|++|+++|.+||+.|++|+|+|+||||.+||++|+++|.+.||+|||+++++++|+|.+
T Consensus 348 aI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~e 427 (556)
T KOG1467|consen 348 AISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLE 427 (556)
T ss_pred HHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccc
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDI 602 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v 602 (658)
|++||||||+|++||.|++|+||+++||+|++|||||+||||+|||++|+|+|++++||| +||+++..++|+++.
T Consensus 428 vtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL-----~dpn~l~~v~g~~~~ 502 (556)
T KOG1467|consen 428 VTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNEL-----GDPNALQEVRGREDK 502 (556)
T ss_pred cceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhccc-----CChhhhhhccCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999997778
Q ss_pred cccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCC
Q 006164 603 NHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQ 655 (658)
Q Consensus 603 ~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~~~~ 655 (658)
..+.+|....+++++|++||+||||||++||||+|+++|++||+|||+|...+
T Consensus 503 ~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~~~ 555 (556)
T KOG1467|consen 503 VALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKLTD 555 (556)
T ss_pred hhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhccc
Confidence 88999999999999999999999999999999999999999999999997654
No 2
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=1.9e-69 Score=572.18 Aligned_cols=303 Identities=22% Similarity=0.384 Sum_probs=274.7
Q ss_pred Cccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCcc
Q 006164 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (658)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~ 371 (658)
++|.|| +.||++.+|+.|.++++++.+|++| +|+| | .++|++|++++++. .
T Consensus 8 ~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApai---g-----------~~aa~~~~l~~~~~----~----- 64 (331)
T TIGR00512 8 GSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAI---G-----------IVAAYGLALAAREA----D----- 64 (331)
T ss_pred CEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHH---H-----------HHHHHHHHHHHhhc----C-----
Confidence 568899 9999999999999999999999999 7999 4 48889998887663 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006164 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (658)
Q Consensus 372 t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~ 451 (658)
...++...|+..+++|.+||||++||+||++++++.+... .+.+++|+.+++.+++|++|. ..+++.|+++|.++
T Consensus 65 -~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e~-~~~~~~I~~~g~~~ 139 (331)
T TIGR00512 65 -EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEED-LEDNRAIGENGAAL 139 (331)
T ss_pred -CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2467888999999999999999999999999999888763 467899999999999999885 67999999999999
Q ss_pred ccCCC----EEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHH
Q 006164 452 IRDGD----VLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISY 518 (658)
Q Consensus 452 I~dgd----vILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~ 518 (658)
|++|+ +|||||||. ++.++|+.||++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|
T Consensus 140 I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~ 219 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAH 219 (331)
T ss_pred hcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHH
Confidence 99999 999999873 67799999999999999999999999999977 699999999999999999999
Q ss_pred Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCcccc
Q 006164 519 IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKV 596 (658)
Q Consensus 519 iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~ 596 (658)
+|+ +||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++. ++++ +||++||+|+..+
T Consensus 220 ~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~----~~~i-~iE~r~p~ev~~~ 294 (331)
T TIGR00512 220 LMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKD----GAEI-PIEERPPEEVTHV 294 (331)
T ss_pred HhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCC----cccc-ccccCCHHHhccc
Confidence 999 89999999999999999999999999999999999999999999999988653 3456 8899999999865
Q ss_pred CCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCC
Q 006164 597 PGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 641 (658)
Q Consensus 597 ~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~P 641 (658)
.|. +..+++++++||+||+||++|||+||||.|++.|
T Consensus 295 ~g~--------~~~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 295 GGV--------RIAPPGIDVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred CCc--------ccCCCCceeecccccCCCHHHCCEEEccCCccCC
Confidence 442 3456789999999999999999999999999976
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=5e-69 Score=572.17 Aligned_cols=315 Identities=23% Similarity=0.356 Sum_probs=279.2
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.++|.|| +.||+++.|+.|.++++++.+|++| +|+| | .+++++|.+++++. ...
T Consensus 10 ~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApai---g-----------~aaa~~lal~~~~~----~~~-- 69 (344)
T PRK05720 10 DGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAI---G-----------IAAAYGMALAARED----ASD-- 69 (344)
T ss_pred CCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHH---H-----------HHHHHHHHHHHhhc----cCC--
Confidence 4579999 9999999999999999999999999 6999 4 47788887776542 111
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
...++.+.|+..+++|.+||||++||+|+++++++.+... +.+++|+.+++.+++|++|. ..+++.|+++|.+
T Consensus 70 --~~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~~----~~~~~~~~l~~~a~~~~~e~-~~~~~~I~~~g~~ 142 (344)
T PRK05720 70 --DGEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAPL----PGAERKAALEEEAIEIHEED-VEINRAIGEHGLT 142 (344)
T ss_pred --CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 2467888899999999999999999999999999887542 47889999999999999996 5689999999999
Q ss_pred hccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhh
Q 006164 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~ 521 (658)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|+
T Consensus 143 ~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~ 222 (344)
T PRK05720 143 LIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQ 222 (344)
T ss_pred HccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhc
Confidence 999999999999984 34579999999999999999999999999977 699999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~ 599 (658)
+||+||||||+|++||+++||+|||++|++||+|+||||||||+|||+++++.+ .++ +||++||+|+..++|.
T Consensus 223 ~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g----~~i-~iE~r~~~ev~~~~~~ 297 (344)
T PRK05720 223 TGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADG----KEI-PIEERDPEEVTEVGGV 297 (344)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCC----ccc-ccccCCHHHhcccCCc
Confidence 599999999999999999999999999999999999999999999999987643 445 7899999999876543
Q ss_pred ccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhh
Q 006164 600 EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYG 652 (658)
Q Consensus 600 ~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~ 652 (658)
+..+++++++||+||+||++|||+||||.|+++|+++..+ ++|.
T Consensus 298 --------~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~-~~~~ 341 (344)
T PRK05720 298 --------RIAPEGVKVYNPAFDVTPAELITGIITEKGIVAPPDTANL-AALF 341 (344)
T ss_pred --------ccCCCCceeecccccCCCHHHCCEEEcCCCccCccHHHHH-HHHh
Confidence 2456789999999999999999999999999999988755 5554
No 4
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.6e-68 Score=562.95 Aligned_cols=304 Identities=27% Similarity=0.461 Sum_probs=280.5
Q ss_pred chhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006164 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406 (658)
Q Consensus 327 ~mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk 406 (658)
.|||.+.+++.++.+++++|+.+.|++++.+|..++.++.++ ...+|++.|+..+++|.+|||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAE----SPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 489999999999999999999999999999999999987664 3568889999999999999999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEe
Q 006164 407 SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (658)
Q Consensus 407 ~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ 486 (658)
+... ..+.+++|+.+.+.+++|+++ +..+++.|++++.++|.+|++|||||||++|+++|+.|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 7632 346789999999999999987 68899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHH
Q 006164 567 KFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPV 646 (658)
Q Consensus 567 Kf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ 646 (658)
||+++++.+. ++ ++|++|++|+..... ....++++++||+||+|||+|||+||||.|+++|++++.
T Consensus 233 K~~~~~~~~~----~~-~ie~~~~~ev~~~~~---------~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~ 298 (310)
T PRK08535 233 KFSPKTLLGE----LV-EIEERDPTEVLPEEI---------LAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYT 298 (310)
T ss_pred eecCCCCCCC----cc-eecccCHHHhccccc---------ccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHH
Confidence 9999987653 23 677799998875311 134568999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 006164 647 IVREYGR 653 (658)
Q Consensus 647 ilrey~~ 653 (658)
++++|+.
T Consensus 299 ~~~~~~~ 305 (310)
T PRK08535 299 IIKEYLG 305 (310)
T ss_pred HHHHHhC
Confidence 9999986
No 5
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-68 Score=551.47 Aligned_cols=309 Identities=24% Similarity=0.363 Sum_probs=276.9
Q ss_pred ccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccc
Q 006164 299 RVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKT 372 (658)
Q Consensus 299 ~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t 372 (658)
.|.|| +.||++.+|+.|+++++++.+|++| +||| |.+++++|++++++.-.+ .
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAI--------------gv~AayG~alaa~~~~~~-------~ 71 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAI--------------GVAAAYGLALAARESKND-------S 71 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHH--------------HHHHHHHHHHHHHhcccc-------c
Confidence 68888 9999999999999999999999999 7999 458999999998765322 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006164 373 LSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKI 452 (658)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I 452 (658)
..+++...|..+.+.|.++|||+|||+|++++|++.+.+.. ..++.++.+.+...+...|+ ...|..|+++|+++|
T Consensus 72 ~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~---~v~~~~~~~~~eA~~i~~ED-~e~n~~iG~~G~~ll 147 (346)
T COG0182 72 KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAI---EVKEPKESILQEAEEIAEED-LEANRAIGENGAELL 147 (346)
T ss_pred chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 24788889999999999999999999999999998876543 25677888887777777674 568999999999999
Q ss_pred cCCCEEEeeCCh---------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHHHHhh-
Q 006164 453 RDGDVLLTYGSS---------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH- 521 (658)
Q Consensus 453 ~dgdvILT~g~S---------saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~~iM~- 521 (658)
.+|+.||||||. +++ ++++.||++|+..+||++||||++||.+|+ |||.+.|||+|+|+|||++|+|+
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAl-gviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~ 226 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTAL-GVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQ 226 (346)
T ss_pred ccCCeEEeeecCCceeecCccchH-HHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHh
Confidence 999999999984 566 899999999999999999999999999996 99999999999999999999998
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCc
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGRE 600 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~ 600 (658)
.||+||||||+|+.||+++||||||++|++||+|||||||++|..+|+.... ++++| +||+|||+|+..+.|.
T Consensus 227 g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~----~G~~I-~IEER~p~Ev~~v~g~- 300 (346)
T COG0182 227 GMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELK----SGEDI-PIEERDPEEVLEVGGV- 300 (346)
T ss_pred CCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccC----CCCcc-ceeecCHHHeEeeccE-
Confidence 5999999999999999999999999999999999999999999999987654 45778 9999999999988764
Q ss_pred cccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHH
Q 006164 601 DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPV 646 (658)
Q Consensus 601 ~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ 646 (658)
.++++++.++||+||+||++|||+||||.|++.|.....
T Consensus 301 -------riap~~v~~yNPAFDvTP~~lItgIITEkGv~~p~~~~~ 339 (346)
T COG0182 301 -------RIAPEGVEAYNPAFDVTPPELITGIITEKGVFTPPFEEN 339 (346)
T ss_pred -------EeCCCCccccCccccCChHHhcceeeeccceecCchhhh
Confidence 367889999999999999999999999999999985443
No 6
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.6e-67 Score=553.31 Aligned_cols=289 Identities=27% Similarity=0.449 Sum_probs=258.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHH
Q 006164 342 GDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEA 421 (658)
Q Consensus 342 ~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~ea 421 (658)
++++|+.+.+++.+.+|...+....+ +..++|.+.|+..+++|.++||++++|+|+++++++.++. .+.+++
T Consensus 12 ~~vrGa~~ia~~aa~~l~~~~~~~~~----~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~----~~~~~~ 83 (301)
T TIGR00511 12 MEIRGAGRIARAAAAALMEQAAKAES----ASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG----EDVETL 83 (301)
T ss_pred CcccCcHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc----CCHHHH
Confidence 34555555566666666666655433 2457888999999999999999999999999999998853 356889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH
Q 006164 422 KATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (658)
Q Consensus 422 Ke~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL 501 (658)
|+.+++.+++|++| +..+++.|+++|.++|++|++|||||+|++|+++|++|+++|++|+|||+||||++||+.|+++|
T Consensus 84 k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L 162 (301)
T TIGR00511 84 RETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKEL 162 (301)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHH
Confidence 99999999999977 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccccccccccccc
Q 006164 502 VRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (658)
Q Consensus 502 ~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nE 581 (658)
.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+..
T Consensus 163 ~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~---- 238 (301)
T TIGR00511 163 RDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGEL---- 238 (301)
T ss_pred HHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred ccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhc
Q 006164 582 LGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGR 653 (658)
Q Consensus 582 i~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~~ 653 (658)
+ .+|++||+|+....+. ...++++++||+||+||++|||+||||.|+++|++++.+++++|+
T Consensus 239 ~-~ie~~~~~ev~~~~~~---------~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~~~ 300 (301)
T TIGR00511 239 V-EIEERDPTEVLDEEDL---------KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKELLG 300 (301)
T ss_pred c-cccccCHHHhccccCc---------cCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHHcC
Confidence 2 5677999998754331 234689999999999999999999999999999999999999987
No 7
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=3.1e-67 Score=559.91 Aligned_cols=314 Identities=22% Similarity=0.325 Sum_probs=277.5
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.+.|.|| +.||+++.|+.|.++++++.+|++| +|+| | .++++++++++++.- .
T Consensus 23 ~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApai---g-----------iaAa~glal~~~~~~-~------ 81 (363)
T PRK05772 23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAI---G-----------ITAGYGMVLALIENN-V------ 81 (363)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHH---H-----------HHHHHHHHHHHHhcc-C------
Confidence 3579999 9999999999999999999999999 6999 4 488899888877631 1
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP---ISLSESEAKATLHSDIERFINEKIILADRVIVKH 447 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~---~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~ 447 (658)
....++.+.|+..+++|.++|||+|||.|+++++++.+.... ...+.++.++.+.+..++|+++. ..++++|+++
T Consensus 82 -~~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed-~~~~~~I~~~ 159 (363)
T PRK05772 82 -KTLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEE-YDAEIQMGLY 159 (363)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 124678888999999999999999999999999998876431 12356889999999999999986 4599999999
Q ss_pred HHHhccCCCEEEeeCChH---------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHH
Q 006164 448 AVTKIRDGDVLLTYGSSS---------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAIS 517 (658)
Q Consensus 448 a~~~I~dgdvILT~g~Ss---------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~ 517 (658)
|.++|.+|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+|+ |+|.+.||+||||+|||++
T Consensus 160 g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~ 239 (363)
T PRK05772 160 GLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVG 239 (363)
T ss_pred HHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHH
Confidence 999999999999999884 346889999999999999999999999999885 9999999999999999999
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccc
Q 006164 518 YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISK 595 (658)
Q Consensus 518 ~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~ 595 (658)
|+|+ +||+||||||+|++||+++||+|||++|++||+||||||||||+|||+++++.| ++ +||+|||+|+..
T Consensus 240 ~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~~-----~i-~ieer~p~ev~~ 313 (363)
T PRK05772 240 LVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVN-----DV-KIEERDPNEVRT 313 (363)
T ss_pred HHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCcccccc-----cc-ccccCCHHHhcc
Confidence 9997 599999999999999999999999999999999999999999999999887644 44 788899999986
Q ss_pred cCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHH
Q 006164 596 VPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVI 647 (658)
Q Consensus 596 ~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~i 647 (658)
+.|. +..+++++++||+||+||++|||+||||+|++.|++...+
T Consensus 314 ~~~~--------~~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~ 357 (363)
T PRK05772 314 IRGV--------PITPEDVNVYNPVFDVTPPKYITGIITEKGIIYPPFHKNI 357 (363)
T ss_pred cCCc--------eecCCCceeeccCccCCCHHHCCEEEccCCccCCchHHHH
Confidence 5542 3567889999999999999999999999999999865544
No 8
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=5.1e-67 Score=555.19 Aligned_cols=306 Identities=22% Similarity=0.310 Sum_probs=272.2
Q ss_pred Cccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCcc
Q 006164 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (658)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~ 371 (658)
+.|.|| +.||+++.|+.|+++++++.+|++| +|+| | .++|++|+++.++.. .
T Consensus 11 ~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApai---g-----------~aaa~g~~l~~~~~~--~------ 68 (339)
T PRK06036 11 NSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPAL---G-----------AAGGYGIALAARLSK--A------ 68 (339)
T ss_pred CeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHH---H-----------HHHHHHHHHHHHhcc--c------
Confidence 579999 9999999999999999999999999 7999 4 588999988876631 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006164 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (658)
Q Consensus 372 t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~ 451 (658)
...++|.+.|+..+++|.++|||++||+|+++++++.+.. ..+.+++++.+.+.+++|++| +..++++|+++|.++
T Consensus 69 ~~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~---~~~~~~~~~~~~e~a~~~~~e-~~~~~~~I~~~g~~~ 144 (339)
T PRK06036 69 KDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALD---AEDVEEIRDIALREAERIAEE-DVARNKLIGKHGAKL 144 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1246788899999999999999999999999988876543 235688999999999999988 568999999999999
Q ss_pred ccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHHHHhhh
Q 006164 452 IRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 452 I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~~iM~~ 522 (658)
|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+|+ ++|.+.||+||||+|+|++|+|++
T Consensus 145 I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~ 224 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ 224 (339)
T ss_pred ccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhcc
Confidence 99999999999984 456899999999999999999999999999985 999999999999999999999987
Q ss_pred --ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCc
Q 006164 523 --VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGRE 600 (658)
Q Consensus 523 --Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~ 600 (658)
||+||+|||+|++|| ++||+|||++|++||+|+||||||||++||+.....+ ++ +||+|||+|+....+.
T Consensus 225 ~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-----~i-~iE~r~~~Ev~~~~~~- 296 (339)
T PRK06036 225 GMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-----SV-KIEERDPDELRYCGKT- 296 (339)
T ss_pred CCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-----Cc-ccccCCHHHhccccCc-
Confidence 999999999999997 9999999999999999999999999999999765432 45 7888999999865442
Q ss_pred cccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCH
Q 006164 601 DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSV 644 (658)
Q Consensus 601 ~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV 644 (658)
...+++++++||+||+||++|||+||||.|++.|++.
T Consensus 297 -------~~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~P~~~ 333 (339)
T PRK06036 297 -------QIAPKDVPVYNPAFDATPMENVTAIITEKGVFYPPFL 333 (339)
T ss_pred -------ccCCCCceeeCcccccCCHHHCCEEEccCCcccCCcc
Confidence 2356789999999999999999999999999988754
No 9
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=7.5e-66 Score=547.17 Aligned_cols=316 Identities=18% Similarity=0.280 Sum_probs=277.1
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.++|.|| +.||++..|+.|.++++++.+|++| +|+| | .++++++++++++...
T Consensus 21 ~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaI---g-----------vaAa~glal~~~~~~~------- 79 (356)
T PRK08334 21 EGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAI---G-----------AAAAFGLALYAETSKA------- 79 (356)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHH---H-----------HHHHHHHHHHHHhccc-------
Confidence 3579999 9999999999999999999999999 7999 4 4888999888876321
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
....++.+.|+..+++|.++|||+|||.|++++|++.+..... .+.++.++.+.+..+.|+++. ..++++|+++|++
T Consensus 80 -~~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~i~~~d-~~~~~~Ig~~g~~ 156 (356)
T PRK08334 80 -KTKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEEHLE-DPLDEIKRLIVEEAQKIADED-VEANLRMGHYGAE 156 (356)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 1246788889999999999999999999999999988764321 356789999999999999884 6688999999999
Q ss_pred hccCCCEEEeeCC--------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHHHHhh
Q 006164 451 KIRDGDVLLTYGS--------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~--------SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~~iM~ 521 (658)
+|.||+ |||||| +.++.++|+.|+++|+.|+|||+||||++||.+|+ |+|.+.||+||+|+|||++|+|+
T Consensus 157 li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~ 235 (356)
T PRK08334 157 VLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQ 235 (356)
T ss_pred hcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhh
Confidence 999999 999997 45677999999999999999999999999999995 99999999999999999999997
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~ 599 (658)
+||+||||||+|++||+++||+|||++|++||+|+||||||||++||+..+.. ++++ +||+++|+|++.+.|.
T Consensus 236 ~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~----~~~i-~iE~r~~~ev~~~~~~ 310 (356)
T PRK08334 236 QGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKS----GKEI-PIEERSPEEVLTCGGC 310 (356)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCC----Cccc-ccccCChHHheeccCc
Confidence 79999999999999999999999999999999999999999999999976542 3455 8999999999865432
Q ss_pred ccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhh
Q 006164 600 EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYG 652 (658)
Q Consensus 600 ~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~ 652 (658)
...++++++||+|||||++|||+||||.|++.|++...+ +++.
T Consensus 311 ---------~~~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~P~~~~~~-~~~~ 353 (356)
T PRK08334 311 ---------RIAPDVDVYNPAFDVTPHKYLTGIITDRGVVWPPFERNL-KKLF 353 (356)
T ss_pred ---------ccCCCcceecccccCCCHHHCCEEEcCCCccCCchHHHH-HHHh
Confidence 223479999999999999999999999999999877654 4443
No 10
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=4.8e-66 Score=544.71 Aligned_cols=292 Identities=23% Similarity=0.344 Sum_probs=252.5
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.++|.|| +.||+++.|+.|.++++++.+|++| +|+| |.++|+++.++.++.
T Consensus 19 ~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~i--------------g~~aa~g~~l~~~~~--------- 75 (329)
T PRK06371 19 DGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAI--------------GVTAAYGLAMASKNG--------- 75 (329)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHH--------------HHHHHHHHHHHHHhH---------
Confidence 3579999 9999999999999999999999999 7999 447888887766432
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
..+...+++|.+||||++||+||+++|+... .+.+++++.+.|.+ .++++|+++|.+
T Consensus 76 --------~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~------~~~~~a~~~~~e~~---------~~~~~I~~~g~~ 132 (329)
T PRK06371 76 --------ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE------FDMNAARRYAMEII---------GRSKKIGEYGNE 132 (329)
T ss_pred --------HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc------CcHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 2267778999999999999999999997532 23556665544433 477899999999
Q ss_pred hccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhh
Q 006164 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~ 521 (658)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|+|+
T Consensus 133 ~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 212 (329)
T PRK06371 133 LIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMR 212 (329)
T ss_pred HcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhh
Confidence 999999999999873 34689999999999999999999999999997 699999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~ 599 (658)
+||+||+|||+|++||+++||+|||++|++||+||||||||||+++|+.... .+.++ +||+++|+|+..+.|.
T Consensus 213 ~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~----~g~~i-~iEer~~~ev~~~~g~ 287 (329)
T PRK06371 213 KKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIK----SGDEI-PIEERDENEVLEINGC 287 (329)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCC----CcCcc-ccccCCHHHeeccCCe
Confidence 5999999999999999999999999999999999999999999888875432 34556 8999999999865442
Q ss_pred ccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHH
Q 006164 600 EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVI 647 (658)
Q Consensus 600 ~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~i 647 (658)
...+++++++||+||+||++|||+||||.|+++|++++.+
T Consensus 288 --------~~~p~~~~v~Np~FDvTP~elIt~iITE~Gv~~p~~i~~~ 327 (329)
T PRK06371 288 --------RIGPQESHARNPAFDVTPNEYVTGFITEYGIFKPNELWKL 327 (329)
T ss_pred --------ecCCCCccccCcCccCCCHHHCCEEEccCCccChHHhhhc
Confidence 2356789999999999999999999999999999988764
No 11
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-65 Score=527.86 Aligned_cols=299 Identities=31% Similarity=0.521 Sum_probs=277.0
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006164 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (658)
Q Consensus 328 mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~ 407 (658)
+||.|..+...+.+++|.|+.++|++++.+|+.++.++.++ ..++|++.++...+.|..+||+++||+|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~----~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAP----TVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 58999999999999999999999999999999999998876 36889999999999999999999999999999987
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC
Q 006164 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (658)
Q Consensus 408 ~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E 487 (658)
. ....+.++.++.+.+.+++|++. ++.+.+.|++.++++|+||++|||||+|++|..+|+.|++.|++|+|||+|
T Consensus 78 ~----~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 D----SSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred c----ccccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 2 12335678889999999999877 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
|||.+||+.|+++|.+.||+||+|+|++++++|.+||+||||||+|++||+++||+||++||++||++++|||||||+||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHH
Q 006164 568 FHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVI 647 (658)
Q Consensus 568 f~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~i 647 (658)
|++++++|....++. +|+.|+....+ ..+++++||+||+||++|||+||||.|+++|+.++.+
T Consensus 233 f~p~~~~~~~~~~~~-----~~~~e~~~~~~------------~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i 295 (301)
T COG1184 233 FVPKTLLDTLVEIEL-----RDPLEVAREEP------------LGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRI 295 (301)
T ss_pred ccccccCCCcceeec-----cChhhccccCc------------ccCccccccccCCCcHHHhheeeecCCCCCchhHHHH
Confidence 999999887655555 99998863211 1268999999999999999999999999999999999
Q ss_pred HHHhh
Q 006164 648 VREYG 652 (658)
Q Consensus 648 lrey~ 652 (658)
++|||
T Consensus 296 ~~e~~ 300 (301)
T COG1184 296 LRELY 300 (301)
T ss_pred HHHhh
Confidence 99986
No 12
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=6.5e-65 Score=533.67 Aligned_cols=292 Identities=25% Similarity=0.416 Sum_probs=252.1
Q ss_pred CcchhhhhhcccchhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCc
Q 006164 315 LPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPL 394 (658)
Q Consensus 315 l~~~~~~~~ai~~mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPt 394 (658)
|+++++.+.+|+.| +++|+.+.|++.+.++..++..+.+ ...++|.+.|+..+++|.+|||+
T Consensus 1 ~~~~~~~~~~I~~m--------------~vrGa~~ia~aa~~~l~~~~~~~~~----~~~~e~~~~l~~~~~~L~~~RPt 62 (303)
T TIGR00524 1 CRTYEDVADAIKSM--------------VVRGAPAIGVAAAYGLALAARKIET----DNVEEFKEDLEKAADFLLSTRPT 62 (303)
T ss_pred CCCHHHHHHHHHhC--------------eecChHHHHHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHhCCc
Confidence 45667777777776 3444444445555555555544433 23578889999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCCh--------HH
Q 006164 395 SVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SA 466 (658)
Q Consensus 395 sVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~S--------sa 466 (658)
+++|+|+++++++.+.. ..+.+++|+.+++.+++|++|.+ .++++|+++|.++|.+|++||||||| ++
T Consensus 63 ~v~l~na~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~t 138 (303)
T TIGR00524 63 AVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGT 138 (303)
T ss_pred hhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCccccccCcch
Confidence 99999999999988853 24678999999999999999965 58899999999999999999999999 89
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEcchHHHHHhh--hccEEEEcceeEecCCCeeccc
Q 006164 467 VEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 467 V~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaVlaNG~VvNKi 543 (658)
|+++|+.|+++|++|+|||+||||++|| +.++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+
T Consensus 139 v~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~ 218 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKI 218 (303)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhh
Confidence 9999999999999999999999999999 666899999999999999999999999 9999999999999999999999
Q ss_pred chHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCceeccccccc
Q 006164 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDA 623 (658)
Q Consensus 544 GT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDv 623 (658)
|||++|++||+|+||||||||+|||+++++.+ .++ ++|++||+|+....|. ...+++++++||+||+
T Consensus 219 GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g----~~i-~~e~~~~~ev~~~~~~--------~~~~~~~~v~np~fD~ 285 (303)
T TIGR00524 219 GTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCG----EDI-VIEERDPEEVAQVGGV--------RIAPLGVKVYNPAFDI 285 (303)
T ss_pred hHHHHHHHHHHhCCCEEEecccccccCCCCCc----ccc-ccccCCHHHhccccCc--------ccCCCCceeecccccC
Confidence 99999999999999999999999999987643 445 7888999998765432 1245789999999999
Q ss_pred cCCCCccEEEeCCCCCCC
Q 006164 624 TPSDYVSLIITDYGMIPP 641 (658)
Q Consensus 624 TPpeLIt~IITE~Gil~P 641 (658)
|||+|||+||||.|+++|
T Consensus 286 TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 286 TPHDLIDAIITEKGIITP 303 (303)
T ss_pred CCHHHCCEEEcCCCccCc
Confidence 999999999999999987
No 13
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=3.8e-64 Score=520.36 Aligned_cols=281 Identities=39% Similarity=0.619 Sum_probs=244.4
Q ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHH
Q 006164 343 DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAK 422 (658)
Q Consensus 343 ~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK 422 (658)
+|+|+.++|++++.+|++++.++.++ ...+|++.|+.++++|.++||++++|+|+++++++.+.......+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~----~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKAT----TVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCS----SHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 58999999999999999999998764 46789999999999999999999999999999999877666666789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH
Q 006164 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (658)
Q Consensus 423 e~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~ 502 (658)
+.+++.+++|++| +..+.+.|++++.++|++|++|||||||++|+.+|+.|+++|++|+|||+||||++||+.|+++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEcchHHHHHhhh-ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccccccccccccc
Q 006164 503 RKGLSCTYTHINAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (658)
Q Consensus 503 ~~GI~vTlI~DsAv~~iM~~-Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nE 581 (658)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++++++|....||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999988776677
Q ss_pred ccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCC
Q 006164 582 LGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 641 (658)
Q Consensus 582 i~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~P 641 (658)
+ ++++|+...++.. ...++++++||+||+|||+|||+||||.|+++|
T Consensus 236 ~-----~~~~~v~~~~~~~--------~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 236 L-----RDPQEVLPFDGSS--------IVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp B-------THHHHEETTEE--------ESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred c-----cccceeeccCCcc--------cccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 7 9999988765431 234589999999999999999999999999988
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=2.7e-61 Score=498.88 Aligned_cols=232 Identities=28% Similarity=0.415 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 006164 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD 454 (658)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~d 454 (658)
.++++.|....++|.++|||++||.|++++|. .++.++.+.+.+++|+++ +..++++|+++|.++|.+
T Consensus 42 ~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~-----------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~ 109 (275)
T PRK08335 42 EELENALKELREEIPEVNPTMASLYNLARFIP-----------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDD 109 (275)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 45677789999999999999999999999971 235677788889999977 678999999999999999
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEe
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVl 534 (658)
|++|||||||++|.++|+.|+++|++|+|||+||||++||++|+|+|.+.||+||||+|++++|+|++||+||||||+|+
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~ 189 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVT 189 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCc
Q 006164 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENL 614 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l 614 (658)
+||+++||+|||++|++||+|+||||||||+|||++.+.. +++ +||++++ .++++
T Consensus 190 ~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~-----~~i-~ieer~~-------------------~~~~~ 244 (275)
T PRK08335 190 RDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKS-----EEV-ELVERPY-------------------ARQGH 244 (275)
T ss_pred cCCCEeehhhHHHHHHHHHHcCCCEEEECccceecccCCC-----CCc-cccccCC-------------------CCCCc
Confidence 9999999999999999999999999999999999987542 244 5665543 24578
Q ss_pred eeccccccccCCCCccEEEeCCCCCCCCC
Q 006164 615 QLLNLIYDATPSDYVSLIITDYGMIPPTS 643 (658)
Q Consensus 615 ~v~Np~FDvTPpeLIt~IITE~Gil~Pss 643 (658)
+++||+||+||++|||+||||.|+++|..
T Consensus 245 ~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 245 RVRNVLFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred eecCcCccCCCHHHCCEEEccCCccCCCC
Confidence 89999999999999999999999997764
No 15
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-60 Score=479.31 Aligned_cols=312 Identities=22% Similarity=0.351 Sum_probs=271.7
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
+.+|++| +.||++..|+.+.+++|.|..|+.| +||| +...|++++..++. +.+.
T Consensus 10 ~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaI--------------Aivg~Lslaveiq~--~~~~---- 69 (354)
T KOG1468|consen 10 RGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAI--------------AIVGSLSLAVEIQK--KGFP---- 69 (354)
T ss_pred CchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHH--------------HHHHHHHHHHHHhh--ccCC----
Confidence 3478888 8999999999999999999999999 6999 23556777666655 3332
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
.+..+.+.|...++||.++|||+|||.|+.+.|+..+.+... .+...++.+++..++++++. ...|+.|+.+|.+
T Consensus 70 --~~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~~--~~~~~~~~~~~~~e~ml~~d-l~~N~~ig~~g~~ 144 (354)
T KOG1468|consen 70 --GSDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAASEDK--SEKAKREKCISYTEDMLEKD-LADNRAIGDNGAK 144 (354)
T ss_pred --chHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHH
Confidence 245578889999999999999999999999999998876532 34667788888888888774 5688899999998
Q ss_pred hccC------CCEEEeeCC---------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch
Q 006164 451 KIRD------GDVLLTYGS---------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (658)
Q Consensus 451 ~I~d------gdvILT~g~---------SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds 514 (658)
++.+ .-+|||||| ++++ ++|+.+|+.|+.-+|||+|||||+||.||+ +||+...||.|+|+||
T Consensus 145 ~Llq~~~~~~kltVlThCNTGSLATagyGTAL-GVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS 223 (354)
T KOG1468|consen 145 ELLQAVKDKGKLTVLTHCNTGSLATAGYGTAL-GVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDS 223 (354)
T ss_pred HHHHhcCCCCceEEEEeecCCchhhcccchHH-HHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhH
Confidence 7743 257999986 4666 899999999999999999999999999997 9999999999999999
Q ss_pred HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCC
Q 006164 515 AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDS 592 (658)
Q Consensus 515 Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~e 592 (658)
|++++|+ +||.||+|||+|.+||+.+||||||++|++||||||||||++|...++.... ++.|| .||||+|.|
T Consensus 224 ~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~----tG~eI-iIEERp~~E 298 (354)
T KOG1468|consen 224 MVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLA----TGDEI-IIEERPPAE 298 (354)
T ss_pred HHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccC----CCCee-EEeecCchH
Confidence 9999999 8999999999999999999999999999999999999999999998886654 56788 999999999
Q ss_pred ccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCH
Q 006164 593 ISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSV 644 (658)
Q Consensus 593 v~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV 644 (658)
++.+.|...+ .++.+++.||||+||+||++|||+||||.|+++|...
T Consensus 299 m~~v~gg~~v-----~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~~ 345 (354)
T KOG1468|consen 299 MTHVTGGEGV-----RIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEEL 345 (354)
T ss_pred heeecCCcce-----EecCCCCCccCccccCCHHHHHHHHhhhccccChHHh
Confidence 9988875433 4678999999999999999999999999999999754
No 16
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-53 Score=435.99 Aligned_cols=306 Identities=25% Similarity=0.369 Sum_probs=276.7
Q ss_pred HHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Q 006164 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (658)
Q Consensus 331 AI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~ 410 (658)
.|-.+-..+..+.+.|+.+.|+.++..|+++|.+..|+ ...+|.+.++..++.|..+.|+..+.||.+||+++.++
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~----~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliR 85 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWS----TANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIR 85 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHH
Confidence 45556667788999999999999999999999988874 56799999999999999999999999999999999888
Q ss_pred hcCC----C------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006164 411 KIPI----S------------------------------LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD 456 (658)
Q Consensus 411 ~~~~----~------------------------------~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgd 456 (658)
++.. + ....+.|+.+++.|++.+.| |+..++.|+.++.++|++++
T Consensus 86 eE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehihsnE 164 (353)
T KOG1465|consen 86 EEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIHSNE 164 (353)
T ss_pred HHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhccCc
Confidence 7311 0 01224789999999999999 89999999999999999999
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecC
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaN 536 (658)
+|||+|.|.+|+.||++|.++||+|+|+|.|.-|.+||+.|++.|.++||.+|+|+|++++.+|++|+|||+|+++|++|
T Consensus 165 viLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~N 244 (353)
T KOG1465|consen 165 VILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLAN 244 (353)
T ss_pred eEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCcee
Q 006164 537 GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQL 616 (658)
Q Consensus 537 G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v 616 (658)
|++....|++++|++||+|.+|||||++.||+|+.++.|.-..+++ +.|+++..+... .....+++
T Consensus 245 Ggl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f-----~s~~~il~~~e~---------~~~~~~~v 310 (353)
T KOG1465|consen 245 GGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEF-----RSPSEILPFSEG---------DPAGRVDV 310 (353)
T ss_pred CCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhc-----CCcccccCcccc---------Ccccceee
Confidence 9999999999999999999999999999999999999775444555 888888765321 23456899
Q ss_pred ccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCC
Q 006164 617 LNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQ 655 (658)
Q Consensus 617 ~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~~~~ 655 (658)
+||+|||+||||||+|||+.|.+.|++|++++.+||+.+
T Consensus 311 ~nP~fDyvppeLVtLFIsNtgg~~PSyvyRl~~d~Yh~~ 349 (353)
T KOG1465|consen 311 LNPAFDYVPPELVTLFISNTGGVAPSYVYRLMEDLYHPQ 349 (353)
T ss_pred cccccccCChhheeEEEecCCCCChHHHHHHHHHhcChh
Confidence 999999999999999999999999999999999999754
No 17
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-52 Score=416.04 Aligned_cols=281 Identities=26% Similarity=0.350 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhc--CCCccHHHHHHHHH
Q 006164 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI--PISLSESEAKATLH 426 (658)
Q Consensus 349 araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~--~~~~~~~eaKe~L~ 426 (658)
+-++|.+.++.++++... .+...+|...|++..+.|+..-++++++..+.+.+.+.+..- .+..+.+++|++++
T Consensus 28 a~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~ 103 (313)
T KOG1466|consen 28 AMAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLL 103 (313)
T ss_pred hhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 445677777777776532 246789999999999999999999999999988777766543 23346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC
Q 006164 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 427 e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI 506 (658)
|..+.|++. ...++..|++.+..+|.||++|||||||.+|..+|..|+++++.|+|||+||||..+|..|+++|.+.||
T Consensus 104 erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~I 182 (313)
T KOG1466|consen 104 ERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGI 182 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCC
Confidence 999999966 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccc-ccccccc
Q 006164 507 SCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSIC-SNELGVL 585 (658)
Q Consensus 507 ~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~-~nEi~~I 585 (658)
|||++.|+|++|+|.+||+|||||+.|..||+++|++|||++|++||+.++|||||+|+|||.+.+++++.. .++++|+
T Consensus 183 PvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~ 262 (313)
T KOG1466|consen 183 PVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPF 262 (313)
T ss_pred CeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999987531 1222122
Q ss_pred ccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHh
Q 006164 586 LAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 651 (658)
Q Consensus 586 E~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey 651 (658)
+.+.+ ....+++...||..|||||+|||++|||+|+++|+.|...|=.+
T Consensus 263 ~f~~~-----------------~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIKl 311 (313)
T KOG1466|consen 263 KFSRP-----------------VPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIKL 311 (313)
T ss_pred ccCCC-----------------CCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHHh
Confidence 22211 11224677889999999999999999999999999997655443
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=6.8e-50 Score=409.23 Aligned_cols=246 Identities=21% Similarity=0.282 Sum_probs=197.8
Q ss_pred hcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHH
Q 006164 340 LSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSES 419 (658)
Q Consensus 340 ~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~ 419 (658)
.+..-+|+.+.++-+|..|+.-- .+ ...++.|.++||-+.-+.|.+++++..- +...+
T Consensus 7 ~~d~~~Gs~~~~~~~l~~l~~~~------------~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~~ 64 (253)
T PRK06372 7 LSDNASGSADVAFKIISFFSHND------------ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLRPK 64 (253)
T ss_pred hcCccccHHHHHHHHHHHHhccc------------hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCCHH
Confidence 46778899888877776665321 11 1256778899997777777777765321 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH
Q 006164 420 EAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR 499 (658)
Q Consensus 420 eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~ 499 (658)
+.+.. +..+++.|+++|.++| +|++|||||+|++|+.+|..+ ++.|+|||+||||++||+.|++
T Consensus 65 ~~~~~------------~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a~ 128 (253)
T PRK06372 65 NLKLG------------IEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDMAK 128 (253)
T ss_pred HHHHH------------HHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHHH
Confidence 22221 3357888999999999 779999999999999988654 3458999999999999999999
Q ss_pred HHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccccccccccc
Q 006164 500 RLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICS 579 (658)
Q Consensus 500 eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~ 579 (658)
+|.+.||+||||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+|||||||++|||+++++.+..
T Consensus 129 ~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~-- 206 (253)
T PRK06372 129 LLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTY-- 206 (253)
T ss_pred HHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred ccccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHH
Q 006164 580 NELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVP 645 (658)
Q Consensus 580 nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~ 645 (658)
.++ +.. ....| .++++++||+||+||++|||+||||.|+++|++|+
T Consensus 207 ~~~---~~~---------------~~~~~--~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~ 252 (253)
T PRK06372 207 PNF---KNH---------------PCSEW--NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVN 252 (253)
T ss_pred ccc---ccc---------------ccccC--CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCC
Confidence 011 000 01123 35789999999999999999999999999999885
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.41 E-value=0.0021 Score=65.90 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe-eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~ 518 (658)
..+.|++.|+++|++|++|. .+.+|++..+++...+..+. +.+.++-+ ....+..|.+.||++..+.+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvVt~-----S~~~a~~l~~~gi~v~~l~~----- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGVPT-----SEASTELAKELGIPLFDLNE----- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEECC-----cHHHHHHHHhCCCeEEcHHH-----
Confidence 34578999999999999974 56666666677766542211 22332211 23445666678888652211
Q ss_pred HhhhccEEEEcceeEecCCCeecccchHHH--HHHHHhCCCCeEeecccccccccc
Q 006164 519 IIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 519 iM~~Vd~VivGAdaVlaNG~VvNKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++|..|.|||.|-.+++++---|-..+ -++|+.-+ -+++++...||.++.
T Consensus 75 -~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~l 128 (220)
T PRK00702 75 -VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVL 128 (220)
T ss_pred -CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhc
Confidence 34689999999999999887777554443 45544443 589999999998753
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.35 E-value=0.0023 Score=65.58 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC--eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH
Q 006164 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i 519 (658)
+.|++.|+++|++|++|. .+.||++..+++...+..+ .+.+.|+-+ +...+..|.+.||++..+. -
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt~-----S~~~a~~l~~~gi~v~~l~------~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVPT-----SKQTAELARELGIPLSSLD------E 70 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEeC-----CHHHHHHHHHCCCCEEcHh------H
Confidence 468889999999999976 4555555566666654322 122332211 2345577777899875211 1
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeecccccccccc
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++|..|.|||.|-.|++++ |-|...+. -+......-|+++|...||.++.
T Consensus 71 ~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~l 124 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVASASKRFIVIADESKLVDKL 124 (218)
T ss_pred CCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHHHhhCcEEEEEEchhhhccc
Confidence 337999999999999999884 44432221 12222345799999999998753
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.29 E-value=0.002 Score=65.60 Aligned_cols=117 Identities=20% Similarity=0.139 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH
Q 006164 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~ 517 (658)
+.|++.|+++|.+|++|.. +.||++..+++...+.. +.++|+ +-| ...+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~l-dsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIGL-GTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEEE-CchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 4688999999999998764 66666556666664432 244443 222 234456666788765544
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHH-HHHhCCCCeEeecccccccccc
Q 006164 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 518 ~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
---++|+.|+|||.|-.++.+..--|-+.+-- +......-+|++++..||..+.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l 124 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERL 124 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccC
Confidence 11269999999999998876554444333331 2233456789999999998754
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.12 E-value=0.0095 Score=62.09 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CC-CCEEEEc-----
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG-LSCTYTH----- 512 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~G-I~vTlI~----- 512 (658)
..+.|++.|+++|.+|++|+.=+.|++. .+.+...+ ...+.|+. -+...+.+|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfld~GtT~~-~la~~L~~-~~~ltVvT-------nsl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSIILDAGSTVL-QMVPLLSR-FNNITVMT-------NSLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhcc-CCCeEEEE-------CCHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 3467999999999999999865555443 55555533 22455553 23445677765 33 4554431
Q ss_pred --chHHHH----Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 513 --INAISY----IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 513 --DsAv~~----iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.+.++. .+. .+|+.|+||++|-.++++...--...+--++-....-+|++|+..||...
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRK 214 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCc
Confidence 112222 233 69999999999988876654332344444555578889999999999753
No 23
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.11 E-value=0.0054 Score=63.76 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI------- 511 (658)
..+.|++.|+++|.+|++|+.-+.|++. .+...... +.++|+- - +...+..|.+ .++++.++
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifld~GsT~~-~la~~L~~--~~ltVvT-n------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVINCGSTAF-LLGRELCG--KPVQIIT-N------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcHHHH-HHHHHhCC--CCeEEEe-C------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 3467999999999999999876666665 45555532 3455542 2 2345666664 34444332
Q ss_pred ----cchHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.... ...|. .+|+.|+||++|-.+|-.........+--.+-.+..-+|++|++.||...
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~ 213 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGER 213 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCce
Confidence 1222 24444 68999999999987775544544444444444556788999999999743
No 24
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=96.94 E-value=0.018 Score=60.62 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-------
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~------- 512 (658)
.+.|++.|+++|.+|++|+-=+.|++. .+.+... ..+.++|+- - +...+..|.. .++++.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifld~GtT~~-~la~~L~-~~~~ltVvT-n------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVILDSGTTTF-EIARLMR-KHTDVIAMT-N------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEECCchHHH-HHHHhcC-cCCCeEEEe-C------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 357999999999999999865555554 5555542 233566663 1 2345667764 466655431
Q ss_pred ----chHHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecccccccc
Q 006164 513 ----INAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 513 ----DsAv~~iM~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
....-..+. .+|+.|+||++|-.++++.. -.--..+--++-...--+|++|+..||..
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNR 228 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCC
Confidence 112222333 69999999999987766543 44445555555556677799999999974
No 25
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=96.78 E-value=0.028 Score=58.57 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI------- 511 (658)
..+.|++.|+++|.+|++|+--+.|++. .+.+...+ .+.++|+ + -+...+..|.. .++.+.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD~GtT~~-~la~~L~~-~~~ltVv-T------Nsl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFIDIGTTPE-AVAHALLN-HSNLRIV-T------NNLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhcC-CCCcEEE-E------CcHHHHHHHhhCCCCEEEEECCEEecC
Confidence 3467999999999999999876666664 45555532 2345555 2 23345666664 45555432
Q ss_pred cchHHHH----Hhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHHhCCCCeEeecccccccc
Q 006164 512 HINAISY----IIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 512 ~DsAv~~----iM~--~Vd~VivGAdaVlaNG~V-vNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
..+.++. .+. .+|+.|+||+.|-.++++ .+-..-+.+--..-....-+|++|++.||..
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~ 213 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGR 213 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCC
Confidence 1122222 223 699999999999876544 5555555565555556678899999999964
No 26
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=96.68 E-value=0.029 Score=54.55 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEE-------
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vTlI------- 511 (658)
..++|++.++++|++|++|.-=+.|++. .+.+...+ .+++.|+- - ....+.+|.+. ++++.++
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifld~GtT~~-~la~~L~~-~~~ltVvT-n------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFLDSGTTTL-ELAKYLPD-KKNLTVVT-N------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECchHHH-HHHHHhhc-CCceEEEE-C------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 3467999999999999998876655554 55565543 23555552 2 33456677775 4444332
Q ss_pred ----cchHHHHHhh--hccEEEEcceeEecC-CCeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 512 ----HINAISYIIH--EVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VivGAdaVlaN-G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.....-..|. ++|+.|+|+++|-.+ |-......-..+--..-.+.--+|++|+..||...
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 1112222233 799999999999985 55556666666666666677789999999999754
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=95.78 E-value=0.11 Score=53.81 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEE-------
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI------- 511 (658)
..+.|++.|+++|++||+|+-=+.|++. .+.+...+ +.++|+- -+...+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifld~GtT~~-~l~~~L~~--~~ltVvT-------Ns~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIALDASSTCW-YLARQLPD--INIQVFT-------NSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCcHHHH-HHHHhhCC--CCeEEEe-------CCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 3467999999999999998865555554 55555532 2455552 13344566654 45554332
Q ss_pred ----cchHHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecccccccc
Q 006164 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 512 ----~DsAv~~iM~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
.....-..+. ++|+.|+||++|-.+|++.. -.=.+.+--.+-....-+|++|++.||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 1111222233 69999999999987655554 44445555555566777899999999974
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.2 Score=52.28 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEE--------
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTY-------- 510 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTl-------- 510 (658)
....|++.|+++|++|++|+--+-|++. .+.....+ ...++|+. -+...+..|.... +.+.+
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GTT~~-~la~~L~~-~~~ltviT-------Nsl~ia~~l~~~~~~~vi~~GG~~~~~ 147 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGTTTL-ALARALPD-DNNLTVIT-------NSLNIAAALLEKPNIEVILLGGTVRKK 147 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcHHH-HHHHHhCc-CCCeEEEe-------CCHHHHHHHHhCCCCeEEEeCcEEEcC
Confidence 3457999999999999999876666665 44444432 23366663 2445566676653 33311
Q ss_pred ---EcchHHHHHhh--hccEEEEcceeEecCCCeeccc-chHHHHHHHHhCCCCeEeeccccccccc
Q 006164 511 ---THINAISYIIH--EVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 511 ---I~DsAv~~iM~--~Vd~VivGAdaVlaNG~VvNKi-GT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+.....-..+. .+|+.|+|+++|-.++++...- .-+.+.-.+-....-+|+++.+.||...
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 148 SGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 11222333344 7999999999999887666554 4444555555667888999999999754
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=95.07 E-value=0.27 Score=51.22 Aligned_cols=121 Identities=13% Similarity=0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-------
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~------- 512 (658)
.+.|++.|+++|.+|++|+.=+.|+++ .+.+.... ...+.|+ +- ....+.+|.+ .++.+.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~GtT~~-~la~~L~~-~~~ltvv-Tn------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDCGTTTP-WIIEAIDN-ELPFTAV-CY------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCccHH-HHHHhcCC-CCCeEEE-EC------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 467999999999999999987777766 44444432 1234444 22 2334566664 345543321
Q ss_pred ----chHHHHHhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHHhCCCCeEeecccccccc
Q 006164 513 ----INAISYIIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 513 ----DsAv~~iM~--~Vd~VivGAdaVlaNG~V-vNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
....-..+. .+|+.|+||++|-..+++ ..-.--+.+.-+.-....-+|++|+..||..
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 111112223 699999999999866544 4444445555444455677899999999964
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=94.00 E-value=0.88 Score=48.20 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe--eE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ--FR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~--f~-ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM 520 (658)
.+..|+++|++|.+ +=.|.++|+..+|++..+..+. ++ +.++-|. .+....+.+.||+.+-+.+ .
T Consensus 39 aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~------v 106 (264)
T PLN02384 39 AAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS------H 106 (264)
T ss_pred HHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc------C
Confidence 45667889998876 6678888887777776653322 32 5544332 2334556688999766544 4
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.++|..|=|||-|-.|+.++--=|...+- ++|. ...-|+++++..|+.++
T Consensus 107 ~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~ 158 (264)
T PLN02384 107 PVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKH 158 (264)
T ss_pred CcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceecc
Confidence 57999999999999998777666643322 2222 23478999999999764
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=92.25 E-value=1.8 Score=45.02 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC--eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH
Q 006164 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i 519 (658)
+..++.|+++|++|.+ +=.|.+||+..+|+...+..+ .+++.++-|. .+....+.+.||+..-+.+
T Consensus 9 ~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~------ 76 (228)
T PRK13978 9 LMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND------ 76 (228)
T ss_pred HHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh------
Confidence 3456778899999876 677888998777776654322 2455554332 1233455678999666544
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
..++|..|=|||-|-.|+.++--=|.+.+= ++|. ...-|+|++...|+.++
T Consensus 77 ~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~-~A~~~iii~D~sK~v~~ 129 (228)
T PRK13978 77 VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDE-MASRFVVVVDETKIVQY 129 (228)
T ss_pred CCceeEEEecCceecCCccEEecCcHHHHHHHHHHH-hcCcEEEEEeCcceecc
Confidence 257999999999999999877554533211 1222 23478999999999764
No 32
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=90.91 E-value=1.5 Score=48.59 Aligned_cols=116 Identities=24% Similarity=0.298 Sum_probs=78.1
Q ss_pred HHHHHHHHHHH----HhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHH-HHhCCCCEEEE--
Q 006164 439 LADRVIVKHAV----TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKGLSCTYT-- 511 (658)
Q Consensus 439 ~a~~~Ia~~a~----~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~e-L~~~GI~vTlI-- 511 (658)
.|+++|+++.. .+|...|++||-|++.+++.+|...+..|.+ |+--||.+- +-.- -.-.||.|.|.
T Consensus 107 ~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aN----ILlPrPGfp---~Y~~~a~~~~lEVR~ydl 179 (447)
T KOG0259|consen 107 PARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGAN----ILLPRPGFP---LYDTRAIYSGLEVRYYDL 179 (447)
T ss_pred HHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCc----eecCCCCCc---hHHHhhhhcCceeEeecc
Confidence 35566666633 3566789999999999999888877655543 233567652 2211 22357777763
Q ss_pred --------cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 512 --------HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 512 --------~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
....+-++..+=++.++=-.==-.+|+|+++-=--.+|-+|+.++++|+.
T Consensus 180 LPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 180 LPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 34566677665444444322234679999999999999999999999874
No 33
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.02 E-value=6.2 Score=41.09 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=82.2
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh
Q 006164 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM 520 (658)
+..+..|++++.+| .|+=.|-+||+..+|+.+.+..+ .+.+..+-|. .+....|.+.||+++-+.+ .
T Consensus 8 ~~aa~~A~~~v~~g-mviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~------~ 75 (227)
T COG0120 8 KAAAKAALEYVKDG-MVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE------V 75 (227)
T ss_pred HHHHHHHHHHhcCC-CEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc------c
Confidence 34566788899884 55667888899889888863111 1445544332 3455678889998876654 3
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHH-HHHhCCCCeEeeccccccccc
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~ 571 (658)
..+|..|=|||-|-.++.++---|.+.+=- +-.+...-|+|+++..|+.+.
T Consensus 76 ~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~ 127 (227)
T COG0120 76 DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEV 127 (227)
T ss_pred CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhh
Confidence 469999999999999988776666554321 233456778999999999765
No 34
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=86.54 E-value=1.6 Score=45.28 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccCCCE-EEeeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEE----
Q 006164 440 ADRVIVKHAVTKIRDGDV-LLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTY---- 510 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdv-ILT~g~SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTl---- 510 (658)
.++.|+..++..|+||+. .|=+|--+.|..++.+-.+ +.. --++-+..-|.. .+--..|...| -+||.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~se-ng~Lg~g~~p~~--~~~d~~linaG~~~vt~~pg~ 83 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSE-NGLLGVGPAPLP--GEEDADLINAGKQPVTALPGA 83 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecC-ceeEEecCCCCC--CCCCcchhhCCCceeEecCCc
Confidence 456788889999999975 4556766777665542100 000 112223333322 11123445554 45666
Q ss_pred -EcchHHHHHhh---hccEEEEcceeEecCCCeeccc
Q 006164 511 -THINAISYIIH---EVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 511 -I~DsAv~~iM~---~Vd~VivGAdaVlaNG~VvNKi 543 (658)
+.|++.+..|- ++|.-||||--|-.+|++.|-+
T Consensus 84 ~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 84 SVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred eEEchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 66788877765 7999999999999999999964
No 35
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.08 E-value=3.7 Score=36.61 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=62.9
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh-----hhccEEEEccee
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLGASS 532 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM-----~~Vd~VivGAda 532 (658)
|+..|++..-..+++.+.+.+ ..|+++|..|.. .+.+.+.|+++.+. |..=-..+ .+++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIYG-DATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEES--TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhcccccccc-cchhhhHHhhcCccccCEEEEccC-
Confidence 577899887777777777633 688888888754 77888999876664 33222233 36788877765
Q ss_pred EecCCCeecccchHHHHHHHHhC-C-CCeEeeccccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGF-H-IPVLVCCEAYK 567 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~-~-VPVyV~aetyK 567 (658)
+...+..+++.||.+ . +++++.+...+
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 667888999999983 3 56666555443
No 36
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=84.35 E-value=16 Score=40.86 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------EEEeeCChHHHHHHHHHHHHcCCeeEEEEe-CCCCCch
Q 006164 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGD---------VLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHE 493 (658)
Q Consensus 424 ~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgd---------vILT~g~SsaV~~vL~~A~e~gk~f~ViV~-ESRP~~E 493 (658)
.+.+..+.|... +...+......+.+.+.+-+ .|..+.-...++....=+..+-+. .|.+. +|--.+-
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T 260 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNT 260 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCH
Confidence 455555666554 55566677777777776521 233333344554443333222233 34443 4443333
Q ss_pred H---HHHHHHHHhCCCCEEEEc--chHHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 494 G---KLLLRRLVRKGLSCTYTH--INAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 494 G---~~La~eL~~~GI~vTlI~--DsAv~~iM~---~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+ ..++..|.+.|+.|.++- ++..+.++. +++.++||.-.+ |++..-++++..--+.+..+.-...++-++
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS 338 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGS 338 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEec
Confidence 2 234578889999998874 456788887 689999999988 678999999999999998876666666677
Q ss_pred cccc
Q 006164 566 YKFH 569 (658)
Q Consensus 566 yKf~ 569 (658)
|=..
T Consensus 339 ~GW~ 342 (388)
T COG0426 339 YGWS 342 (388)
T ss_pred cCCC
Confidence 7554
No 37
>PRK04311 selenocysteine synthase; Provisional
Probab=82.91 E-value=23 Score=40.44 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=60.1
Q ss_pred HHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC--chHHHHHHHHHhCCCCEEEEcc------hHHHH
Q 006164 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--HEGKLLLRRLVRKGLSCTYTHI------NAISY 518 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~--~EG~~La~eL~~~GI~vTlI~D------sAv~~ 518 (658)
..++++...+.++|-+.+.++..+| .+...| -+|+|.+..-+ ....++.+.+...|+.+.++.. ..+..
T Consensus 135 ~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~ 211 (464)
T PRK04311 135 LLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQ 211 (464)
T ss_pred HHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHH
Confidence 3344443335666666666675444 444333 47888654322 2224455667788998777642 12233
Q ss_pred Hhh-hccEEEEcceeEec-CCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 519 IIH-EVTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 519 iM~-~Vd~VivGAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+. +..+|++-..+-+. .| ....+--..++-+||.||+|++|=+
T Consensus 212 aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 212 AINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred hcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 343 33333332221111 12 1122345668889999999999855
No 38
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=81.19 E-value=51 Score=37.64 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC-C-CchHHHHHHHHHhCCCCEEEEcc------hHHHHH
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-P-KHEGKLLLRRLVRKGLSCTYTHI------NAISYI 519 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR-P-~~EG~~La~eL~~~GI~vTlI~D------sAv~~i 519 (658)
.++++...+.+++-+.+.++..+| .+...| -+|+|.+.. + +....++.+.+...|+.+..+.. ..+...
T Consensus 131 lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~a 207 (454)
T TIGR00474 131 LCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDA 207 (454)
T ss_pred HHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHh
Confidence 344444335666555555664444 444434 378887654 2 33334555667788999888732 122223
Q ss_pred hh-hccEEEEcceeEec-CCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 520 IH-EVTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 520 M~-~Vd~VivGAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+. +..+|++-..+.+. +|. ...+-...++-+||.||++|+|=+
T Consensus 208 I~~~T~lv~~~h~sN~~~~G~-~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 208 ITENTALLLKVHTSNYRIVGF-TEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred cCcCCEEEEEEccCcccccCC-CCCCCHHHHHHHHHHcCCeEEEEC
Confidence 33 33344433322221 231 123446678889999999999853
No 39
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=78.96 E-value=29 Score=29.93 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCeeEEEEeCCCCCc-----------hHHHHHHHHH----hCCCCEEEE--cchHHHHHhh-----hc
Q 006164 466 AVEMILQHAHELGKQFRVVIVDSRPKH-----------EGKLLLRRLV----RKGLSCTYT--HINAISYIIH-----EV 523 (658)
Q Consensus 466 aV~~vL~~A~e~gk~f~ViV~ESRP~~-----------EG~~La~eL~----~~GI~vTlI--~DsAv~~iM~-----~V 523 (658)
++...+..|...+..+.++.+...+.. +..+....+. ..|+++++. .......++. ++
T Consensus 15 ~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 94 (130)
T cd00293 15 ALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGA 94 (130)
T ss_pred HHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCC
Confidence 344444445555667776655443322 3444443433 368887554 3332333333 57
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|.|++|+..- +.... ..|+..- -+.+..++||+++
T Consensus 95 dlvvig~~~~---~~~~~~~~~~~~~-~ll~~~~~pvliv 130 (130)
T cd00293 95 DLIVMGSRGR---SGLRRLLLGSVAE-RVLRHAPCPVLVV 130 (130)
T ss_pred CEEEEcCCCC---CccceeeeccHHH-HHHhCCCCCEEeC
Confidence 9999998653 22222 3344333 3446688998874
No 40
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=78.43 E-value=26 Score=38.26 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC-------------eeEEE
Q 006164 418 ESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-------------QFRVV 484 (658)
Q Consensus 418 ~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk-------------~f~Vi 484 (658)
.+++.+.+.+.++.|... ....+.+.+..++++.....++|-|.+.++..+|..+.+.|. ...|+
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 344555555554444322 112233444455555444678888888888777776665554 22677
Q ss_pred EeCCCCCchHH--HHHHHHHhCCCCEEEEc------chHHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 006164 485 IVDSRPKHEGK--LLLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 485 V~ESRP~~EG~--~La~eL~~~GI~vTlI~------DsAv~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~ 555 (658)
+ .+|.+... .+..-+...|....++. ...+...+. +...+++-..--...|.+.. + -.++-+||.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHc
Confidence 6 44544311 12233444676555542 123333333 33333221000012343333 2 4578899999
Q ss_pred CCCeEe
Q 006164 556 HIPVLV 561 (658)
Q Consensus 556 ~VPVyV 561 (658)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999987
No 41
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=75.80 E-value=6.3 Score=41.57 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC----EEEEcchHHHHHhhhccEEEEcceeEecCCC-----
Q 006164 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS----CTYTHINAISYIIHEVTRVFLGASSVLSNGT----- 538 (658)
Q Consensus 468 ~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~----vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~----- 538 (658)
..+++.+.++|...+|.+.+-++...- ...+...++. +-+.....+..+|+.||.||-=|.-+...|.
T Consensus 11 ~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~ 87 (280)
T PF01073_consen 11 SHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEE 87 (280)
T ss_pred HHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccCcccHHH
Confidence 355666777776567777775554422 2233444432 3333445788889999999988887776662
Q ss_pred --eecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 539 --VCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 539 --VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
-+|--||-.|--+|+.++|+.+|.+-+.-
T Consensus 88 ~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~ 118 (280)
T PF01073_consen 88 YYKVNVDGTRNVLEAARKAGVKRLVYTSSIS 118 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCcc
Confidence 34679999999999999999999887654
No 42
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=73.73 E-value=46 Score=37.85 Aligned_cols=50 Identities=6% Similarity=0.017 Sum_probs=38.7
Q ss_pred hccEEEEcce-eEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccc
Q 006164 522 EVTRVFLGAS-SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 522 ~Vd~VivGAd-aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
.+|..|.||+ +|..+|++++-.|....-+++ ..-.-+++++...|+.+.+
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~ 231 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTF 231 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCH
Confidence 6999999999 999999999999888855554 3333455667888887654
No 43
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=72.36 E-value=40 Score=30.92 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHhCCCCEEEEc---chHHHHHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHHhCC--CCeEeec
Q 006164 501 LVRKGLSCTYTH---INAISYIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFH--IPVLVCC 563 (658)
Q Consensus 501 L~~~GI~vTlI~---DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNK-iGT~~lAl~Ak~~~--VPVyV~a 563 (658)
+...|+++..+. ++....++. ++|.|++|++.- |.+.-. .|+....-+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 345777765443 243444444 689999999864 333222 35444455678888 9999985
No 44
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.56 E-value=45 Score=36.97 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=39.9
Q ss_pred HHhccCCCEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 449 VTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 449 ~~~I~dgdvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
...|+.||+|+..|....+..+.+...+. ...-+++|+-. ..-|+.+++.|.+.|+++++|.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 34566678888888877776654433221 12346666666 4457778888888888887774
No 45
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=70.23 E-value=28 Score=36.89 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=79.1
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM 520 (658)
-+.++.+....+-.|+=.|.+++|...+... +.++..-+|+++-+ +.+-+.++.+.||++.+....
T Consensus 31 Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h------ 99 (261)
T KOG3075|consen 31 AAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH------ 99 (261)
T ss_pred HHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC------
Confidence 3445666555566777788877766555554 44566666776543 345567888999999887663
Q ss_pred hhccEEEEcceeEecCCCeecccchHHH-HHHHHhCCCCeEeecccccccc
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~l-Al~Ak~~~VPVyV~aetyKf~~ 570 (658)
+.+|..|=|||-|-+|..++---|-... -.+=--....|||++...|+..
T Consensus 100 p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~ 150 (261)
T KOG3075|consen 100 PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSK 150 (261)
T ss_pred ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccch
Confidence 3799999999999999987755554321 1222223467899999999884
No 46
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=69.38 E-value=28 Score=40.12 Aligned_cols=89 Identities=19% Similarity=0.359 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHH
Q 006164 372 TLSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIE 430 (658)
Q Consensus 372 t~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id 430 (658)
....+|.+.|...-+...+.+|+|+.+ ||+.+-+.+.+++- +.+++.+|+.+...++-+
T Consensus 205 ~~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~ 284 (545)
T TIGR01228 205 EQTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPE 284 (545)
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 345678888888888888999999975 99988777666541 113467899998888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh
Q 006164 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS 464 (658)
Q Consensus 431 ~fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S 464 (658)
.|.+. +.+.|.+|.. ++-..|..+.-|||+
T Consensus 285 ~~~~~----~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 285 AYVKA----AKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 88654 6666777644 344568888888875
No 47
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.52 E-value=54 Score=37.02 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=53.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
..|+|-+-+.++..+|......|. +|++... .+.| ..+. +.|.+.|+.++++... .+-..+. +..+|++-
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 456655555666555554444343 5666533 2223 2333 5677789998888532 3444443 34444332
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+......+.. --.++-+||.|+++|+|=
T Consensus 157 --~~~np~g~v~D--i~~I~~la~~~gi~livD 185 (433)
T PRK08134 157 --TLGNPGLEVLD--IPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred --CCCcccCcccC--HHHHHHHHHHcCCEEEEE
Confidence 22111111112 345888999999998873
No 48
>PLN02651 cysteine desulfurase
Probab=67.99 E-value=79 Score=34.04 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcch--------HHHHHhh-
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~- 521 (658)
.+.+++|.|.+.++..+|..+.. .++.-+|++.+... .+... ...|...|+++.++... .+-..+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h--~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH--KCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEccccc--HHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677777666665444444322 12334666654322 11111 23455779988887421 2333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++. +.-...|.+. .+ ..|+-+||.||++|+|
T Consensus 138 ~t~lv~v~-~~~n~tG~~~-~l--~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 138 DTALVSVM-AVNNEIGVIQ-PV--EEIGELCREKKVLFHT 173 (364)
T ss_pred CcEEEEEE-CCCCCceecc-cH--HHHHHHHHHcCCEEEE
Confidence 33334332 2212234332 22 3578889999988876
No 49
>PRK05414 urocanate hydratase; Provisional
Probab=67.94 E-value=30 Score=40.11 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHH
Q 006164 372 TLSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIE 430 (658)
Q Consensus 372 t~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id 430 (658)
....+|.+.|...-+...+-+|+|+.+ ||+.+-+-+.+++- +.+++.+|+.+...++-+
T Consensus 214 ~~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~ 293 (556)
T PRK05414 214 EKADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPE 293 (556)
T ss_pred eEcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHH
Confidence 345677788888888888899999975 99988776665541 123478899999888888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh
Q 006164 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS 464 (658)
Q Consensus 431 ~fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S 464 (658)
.|.+. +.+.|.+|.. ++-..|..+.-|||+
T Consensus 294 ~~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~ 326 (556)
T PRK05414 294 EFVKA----AKASMARHVEAMLAFQARGAYVFDYGNN 326 (556)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 88654 6666776644 344578888888875
No 50
>PRK07582 cystathionine gamma-lyase; Validated
Probab=67.47 E-value=52 Score=35.98 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHH-HHHhCCCCEEEEcchHH-HHHhhhccEEEEcce
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLR-RLVRKGLSCTYTHINAI-SYIIHEVTRVFLGAS 531 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~-eL~~~GI~vTlI~DsAv-~~iM~~Vd~VivGAd 531 (658)
.+.|++-+-+.++..+|......| -+|++.+ |.+.+ ..+++ .|...|+++.++..... ..++++++.|++-
T Consensus 66 ~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le-- 139 (366)
T PRK07582 66 AEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE-- 139 (366)
T ss_pred CCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE--
Confidence 466666555666655554444333 4666653 55444 34443 46678999999864422 2444566666653
Q ss_pred eEecCCCeecccc----hHHHHHHHHhCCCCeEe
Q 006164 532 SVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aVlaNG~VvNKiG----T~~lAl~Ak~~~VPVyV 561 (658)
. .-|..| -..++-+|+.+++.++|
T Consensus 140 ~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 2 223333 35677888899987665
No 51
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.85 E-value=40 Score=37.50 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.+.+|+..|.+..=..+.+.+.+.|. .|++.|..+...=.+...+|.+.|+.+ +........+..+|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCCC
Confidence 46788888987733344445555564 677777654322233456777778763 32222234556789988876432
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.. ..+...|+++|+|++-
T Consensus 80 ~~----------~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 80 LD----------SPPVVQAHKKGIEVIG 97 (450)
T ss_pred CC----------CHHHHHHHHCCCcEEe
Confidence 21 2255566666776654
No 52
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.59 E-value=27 Score=39.38 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=47.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.+..|+.+|.+.+=..+.+.+.+.| ++|.+.|.++......+...|.+.||.+.+-.... ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4678999988754223444555555 57888998876555566788999999775433222 234578888765
No 53
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=65.63 E-value=45 Score=35.52 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-hHHHHHhhhccEEEEccee
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivGAda 532 (658)
...+++|.|.+.++.. +..+...| +|++. .|.+.+... .+...|+++..+.| ..+-..+++.+.|++ ..-
T Consensus 64 ~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~p 134 (330)
T TIGR01140 64 AASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-CNP 134 (330)
T ss_pred hhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eCC
Confidence 4578888887777744 44554333 45553 577766543 35678999988874 233334456665555 222
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=-.-|.++..-.-..++-+|+.|++++++
T Consensus 135 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 135 NNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 22345555555555577788889987665
No 54
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=64.91 E-value=1e+02 Score=30.14 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhc--cCCCEEEeeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCC-chHHHH-HHHHHhCCCC
Q 006164 437 IILADRVIVKHAVTKI--RDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLL-LRRLVRKGLS 507 (658)
Q Consensus 437 i~~a~~~Ia~~a~~~I--~dgdvILT~g~S-----saV~~vL~~A~e~gk~f~ViV~ESRP~-~EG~~L-a~eL~~~GI~ 507 (658)
++.|-..++++...++ ..+..|+.+|-+ -.+ .+-+++++.|.+..|+++.-... .+-.+. .+.+.+.|++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl-~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGL-VAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHH-HHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHH-HHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 3457778888888888 667777777532 233 34577777888888876654433 333333 4778888987
Q ss_pred EEEE-cchHHHHHhhhccEEEEcceeEecCCCeecccchH-HHHHHHHhCCCCeEe
Q 006164 508 CTYT-HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVLV 561 (658)
Q Consensus 508 vTlI-~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~-~lAl~Ak~~~VPVyV 561 (658)
+... .+......+..+|.|| |+|+-.|--=.--|.+ .+.-.++.++.|++-
T Consensus 84 ~~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 84 IIELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp EESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred EeeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 6654 4445555666788886 6788776333333333 233345666666443
No 55
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=64.76 E-value=94 Score=34.63 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=53.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|++-+-+.++..+|......| -+|++.+. .+.+ ..+. ..+...|+.++++... .+...+. +...|++
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~- 161 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF- 161 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEE-
Confidence 56666666666666665544333 36776653 2322 2333 4567789999998543 2333333 3444433
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..-.-..|.++. --.++-+||+|+++|+|
T Consensus 162 esp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 162 ETPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 111112343332 44577789999988776
No 56
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=64.64 E-value=94 Score=32.32 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
++-..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|...
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 3334455677899999999999999999888888899999753
No 57
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=64.29 E-value=1.1e+02 Score=32.54 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=50.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcC--Ce-eEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhhh
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELG--KQ-FRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHE 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~g--k~-f~ViV~ES-RP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (658)
.++++|.|.+.++..+|......+ +. -+|++.+. .|.+- .....+...|+++.++... .+-..+.+
T Consensus 60 ~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~--~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (353)
T TIGR03235 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVL--EPIRALERNGFTVTYLPVDESGRIDVDELADAIRP 137 (353)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHH--HHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence 467777666666655555443211 11 35555432 23221 1123455679998887521 12222221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.++++=.+.-...|.+.. -..|+-+|+.|+++|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEE
Confidence 1223222222223444332 25688889999998876
No 58
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=63.98 E-value=1.7e+02 Score=29.66 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=23.6
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+=|.+|+ |-..|..-+ ...++-.||.+|+|+++++.
T Consensus 108 ~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 108 HAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 34466554 333444222 44566789999999999875
No 59
>PRK09932 glycerate kinase II; Provisional
Probab=63.82 E-value=8.4 Score=43.02 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
.|.++.-++.. +-..|+.+|.||.|=-++- .....--..+.||-+|+.|+|||+++|.+...
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D--~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRID--SQTAGGKAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCccc--ccccCCccHHHHHHHHHHcCCCEEEEecccCC
Confidence 57787766544 2356788999999987763 33444455677888999999999999997644
No 60
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=63.41 E-value=71 Score=34.92 Aligned_cols=50 Identities=8% Similarity=0.134 Sum_probs=31.8
Q ss_pred hHHHHHhhhccEEEEccee----EecCCCeeccc----chHHHHHHHHhCCCCeEeec
Q 006164 514 NAISYIIHEVTRVFLGASS----VLSNGTVCSRV----GTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 514 sAv~~iM~~Vd~VivGAda----VlaNG~VvNKi----GT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-.++..=..||+..+. +-.||.+.|-- +=...+++|...+--.++++
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiL 233 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIIL 233 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEE
Confidence 4555666666677777665 44577666642 24455788999888755543
No 61
>PRK05839 hypothetical protein; Provisional
Probab=63.04 E-value=67 Score=34.89 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=55.5
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH-HHHH-------hhhc
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYI-------IHEV 523 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA-v~~i-------M~~V 523 (658)
+...++++|.|.+.++..++......+.. ..++++ .|.+.+.... +...|+++..+.... -++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45567899999988875444433211112 344444 4777665444 346788887775421 1111 2234
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+|++ +.-=-+.|.++++-=-..++-+|+.|++.+++
T Consensus 157 k~v~i-~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVIL-NSPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEE-eCCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 44443 11111124444444334566678899998775
No 62
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=62.99 E-value=87 Score=28.46 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------h-HHHHHhh--hccEEEEcceeEecCCCe
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------N-AISYIIH--EVTRVFLGASSVLSNGTV 539 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D------s-Av~~iM~--~Vd~VivGAdaVlaNG~V 539 (658)
.+.+...+ ..|++|.+++ .++.|.+.||+|+.+.. . .+..+.. ++|+||-=. +|.-
T Consensus 16 ~~a~~l~~--~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~~ 80 (112)
T cd00532 16 DLAPKLSS--DGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPRR 80 (112)
T ss_pred HHHHHHHH--CCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCCc
Confidence 44444443 4688887642 56778889999988632 2 4444444 688887532 3332
Q ss_pred --ecccchHHHHHHHHhCCCCeEeecccccc
Q 006164 540 --CSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 540 --vNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
-.....+.+=-+|-.|+||++....+..|
T Consensus 81 ~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~~ 111 (112)
T cd00532 81 DRCTDEDGTALLRLARLYKIPVTTPNATAMF 111 (112)
T ss_pred ccccCCChHHHHHHHHHcCCCEEECHHHHhh
Confidence 12556778888999999999987665543
No 63
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=62.88 E-value=33 Score=39.73 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHH
Q 006164 372 TLSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIE 430 (658)
Q Consensus 372 t~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id 430 (658)
....+|.+.|...-++..+-+|+|+.+ ||+.+.+.+.+++. +.+++.+|+++...++-+
T Consensus 204 ~~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~ 283 (546)
T PF01175_consen 204 EVTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPE 283 (546)
T ss_dssp EEESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHH
T ss_pred EEcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHH
Confidence 344678888888888899999999974 99988777666541 123467899999988888
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCC
Q 006164 431 RFINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSR 489 (658)
Q Consensus 431 ~fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESR 489 (658)
.|.+. +.+.|.+|.. ++-..|..+.=|||+ +-|..+|+-.+..|+ .||=+|+-..
T Consensus 284 ~~~~~----v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGd 359 (546)
T PF01175_consen 284 EFKER----VQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGD 359 (546)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCC
Confidence 88654 5666666643 344578888989886 446667777777776 5777776666
Q ss_pred CC
Q 006164 490 PK 491 (658)
Q Consensus 490 P~ 491 (658)
|.
T Consensus 360 pe 361 (546)
T PF01175_consen 360 PE 361 (546)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 64
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=62.85 E-value=99 Score=34.18 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=52.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
+.|+|-+-..++..+|......|. +|++. ++.+.+ ..+. ..+...|+.++++.. ..+...+. +..+|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 466666555666555555544444 56653 344433 3333 456778999988843 23333333 34444431
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. -..|+-+|+.|+++++|
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALLVV 181 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 11112333322 15677789999998876
No 65
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.76 E-value=69 Score=36.29 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=52.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-H-HHHHHHhCCCCEEEEcc----hHHHHHhhhccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-L-LLRRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~-La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 529 (658)
..|++-+..+++..+|......|. +|++... .+.|. . +...|...|+.++++.| ..+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~Gd--~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAGD--HIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCC--EEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 345555555555555544443333 6666522 33332 2 23567778999988852 133333432233443
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+....+-..+.. --.|+-+||.+|++|+|=
T Consensus 161 ~e~~~Np~~~v~d--i~~I~~la~~~gi~livD 191 (437)
T PRK05613 161 GETFANPQADVLD--IPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred EECCCCCCCcccC--HHHHHHHHHHcCCeEEEE
Confidence 2333222112333 456778899999998873
No 66
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=62.75 E-value=93 Score=30.29 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 90 ~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 90 SVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 3355678899999999999999888888888987753
No 67
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.62 E-value=51 Score=33.43 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=59.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|-+.+-..-++.+.+.|-.+.|+ ...+. .-..+|.+.| .++++.-.--...+..++.||+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv--sp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at--- 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVI--AEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAAT--- 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEE--cCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECC---
Confidence 4678999999887666677777777655544 43333 2234566666 777776432233345566655432
Q ss_pred ecCCCe-ecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~V-vNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
|+- +| ..++..|+..++||.++-+
T Consensus 78 ---~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 78 ---DDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred ---CCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 332 33 3688899999999998753
No 68
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=62.20 E-value=1.2e+02 Score=32.60 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=51.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHH-HHHHHHHhCCCCEEEEcch--------HHHHHhhhc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vTlI~Ds--------Av~~iM~~V 523 (658)
...+++|.|-+..+..+|..+.. ....-+|++.+. .+.+. .....+...|+.+.++... .+-..+.+=
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34577887777776655554432 111223444332 22232 2234566689998888521 222223221
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.++++-...-...|. +..+ -.|+-+|+.|+++++|
T Consensus 137 ~~lv~i~~~~n~tG~-~~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 137 TALVSVMWANNETGT-IFPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred cEEEEEEcccCCeee-cccH--HHHHHHHHHcCCEEEE
Confidence 233332222223333 3333 3588899999988876
No 69
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=61.72 E-value=87 Score=32.87 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=49.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhh-----ccEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-----VTRV 526 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-----Vd~V 526 (658)
.+.|++.+.+..+..++..+...| -+|++ ++|.+..... .+...|+++.++.. ..+-.++.+ -.++
T Consensus 62 ~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~ 135 (349)
T cd06454 62 EAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKL 135 (349)
T ss_pred CCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeE
Confidence 345555544445544444333333 24554 3455444332 23457888876632 233344443 1233
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++ ...+....+++..+ -.|+-+|++|+++|+|=
T Consensus 136 v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 136 IV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred EE-EeccccCCCCccCH--HHHHHHHHHcCCEEEEE
Confidence 33 22333222234443 45778899999888863
No 70
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=61.62 E-value=1e+02 Score=29.93 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 34566788999999999999999999999999988643
No 71
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=61.22 E-value=1.1e+02 Score=32.73 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=44.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
..+++++++-..+.. -..+.+.+.+. |+.+.++. ..+..+|..+|.+|+-+ |+..+ =|-.+|
T Consensus 218 ~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl~v~~s-------------G~~~l--Ea~a~G 280 (380)
T PRK00025 218 YPDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAADAALAAS-------------GTVTL--ELALLK 280 (380)
T ss_pred CCCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCEEEECc-------------cHHHH--HHHHhC
Confidence 345666665322221 22333445555 78877665 46788889999998832 65444 457789
Q ss_pred CCeEeeccc
Q 006164 557 IPVLVCCEA 565 (658)
Q Consensus 557 VPVyV~aet 565 (658)
+|++++-..
T Consensus 281 ~PvI~~~~~ 289 (380)
T PRK00025 281 VPMVVGYKV 289 (380)
T ss_pred CCEEEEEcc
Confidence 999998543
No 72
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=61.00 E-value=1.2e+02 Score=26.95 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCeeEEE-EeCCCC---CchHHHH----HHHHHhCCCCEEEEcchHH-HHHhh-----hccEEEEcce
Q 006164 466 AVEMILQHAHELGKQFRVV-IVDSRP---KHEGKLL----LRRLVRKGLSCTYTHINAI-SYIIH-----EVTRVFLGAS 531 (658)
Q Consensus 466 aV~~vL~~A~e~gk~f~Vi-V~ESRP---~~EG~~L----a~eL~~~GI~vTlI~DsAv-~~iM~-----~Vd~VivGAd 531 (658)
+|...+..|.+.+..++++ |.+... ..++.+. ...+.+.|+++..+..... .-++. ++|.+++|++
T Consensus 15 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~ 94 (124)
T cd01987 15 LIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKS 94 (124)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCC
Confidence 4444444454445555544 444332 1233333 2445567888766544322 22332 5899999998
Q ss_pred eEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 532 SVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.- |.+-. -.|+..--++-+.-++||+|+
T Consensus 95 ~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 95 RR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 53 22222 234444334333348898886
No 73
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=60.28 E-value=1.5e+02 Score=32.57 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch--------HHHHHhhh
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (658)
...+++|.|.+.++..+|..+.. .++.-+|++.+ +.+.....+ ..|...|+++.++... .+...+.+
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34577776666666555443321 12333566653 334333333 4556679998888532 12222221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=+++++-.+.=...| ++..+ ..|+-+|+.|++.|+|
T Consensus 142 ~~~lv~v~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSIMHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEEECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 123322222111223 33332 3588889999988876
No 74
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=59.26 E-value=1.3e+02 Score=31.94 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=50.9
Q ss_pred CCEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hc
Q 006164 455 GDVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EV 523 (658)
Q Consensus 455 gdvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~V 523 (658)
...++..+. +.++..++......| -+|++.+. ..-+..+...+...|.+++++.. ..+...+. +.
T Consensus 50 ~~~~~~~~~~t~al~~~~~~~~~~g--~~vl~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~ 125 (356)
T cd06451 50 GLTFLLSGSGTGAMEAALSNLLEPG--DKVLVGVN--GVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDI 125 (356)
T ss_pred CCEEEEecCcHHHHHHHHHHhCCCC--CEEEEecC--CchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCC
Confidence 344444444 455544444333333 45666542 22232233445567888777631 23333332 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+|++ .+.-...|.+.. --.++-+|+++++++++=
T Consensus 126 ~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 126 KAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred CEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 45554 333334555433 334777889999888773
No 75
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=59.18 E-value=1.5e+02 Score=27.25 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=27.1
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|.|++|.+. + ...+.| ....-+.++-++||+|+
T Consensus 103 ~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 103 DMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 79999999985 2 344578 44456788899999998
No 76
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=58.88 E-value=1.1e+02 Score=27.35 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=59.6
Q ss_pred CEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----hHHHHHhh--hccEE
Q 006164 456 DVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVTRV 526 (658)
Q Consensus 456 dvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----sAv~~iM~--~Vd~V 526 (658)
.++++.+.+. -+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+...++ ++|.|
T Consensus 2 ~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~v 71 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLV 71 (110)
T ss_pred eEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEE
Confidence 4566666442 23345555554 4688887552 56778889999887632 34444444 78999
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
|--.+ +.- ...-.|.+=-+|-.|+||++-..++
T Consensus 72 In~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~t 104 (110)
T cd01424 72 INTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLDT 104 (110)
T ss_pred EECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHHH
Confidence 87642 221 1234578888999999999965443
No 77
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=58.75 E-value=87 Score=34.32 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---------C--c-----hH----HHHHHHHH
Q 006164 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K--H-----EG----KLLLRRLV 502 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---------~--~-----EG----~~La~eL~ 502 (658)
.|+..+.++|. +..||..|.+.+=..++..+...|.. ++.++|..- . . +| ..++++|.
T Consensus 13 ~~G~~~Q~~L~-~~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIR-EKHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhc-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 36777777776 46789999876544455566666754 333333321 0 0 12 12235666
Q ss_pred hC--CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 503 RK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 503 ~~--GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+. ++.++.+. ...+..++.++|.||.+.|.... -+.+.-+|+.+++|++.++
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 54 45555543 13345567889999999875432 2557788999999998653
No 78
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=58.66 E-value=31 Score=30.91 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=41.2
Q ss_pred EEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 457 VLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
+|-||.....+..+|....++ ...++|+|++..+..+-..+++++.+.+..++++.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~ 59 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIR 59 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccc
Confidence 456666666777777777665 56789999998887777788888887778888884
No 79
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=58.63 E-value=84 Score=34.63 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=53.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+.+.. ..+...|+++..+... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEGD--NILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCCC--EEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 4456788999988888655554433332 44443 35555433 3355678888777421 1111222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++.+|++ +.-=-+.|.++++-=-..++-+|++|++.+++
T Consensus 176 ~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3444433 11111123333332234556678888887654
No 80
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.53 E-value=86 Score=35.36 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=58.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..+|....+.|. +|++.+ +.+.|. .+. ..+...|+++.++... .+-..+. ++.+|++-
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~ 156 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAE 156 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 667777777777767766554444 566654 455443 333 5577789999888532 3333333 45556552
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.---..|.++. + ..|+-+||.++++|+|=
T Consensus 157 -sp~NPtG~v~d-i--~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 157 -TIGNPKGDVLD-I--EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred -CCCCCCCcccC-H--HHHHHHHHHcCCEEEEe
Confidence 11112354443 2 46777899999888764
No 81
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=58.03 E-value=98 Score=34.23 Aligned_cols=97 Identities=21% Similarity=0.196 Sum_probs=54.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEc-c-hHHHHHhh--hccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTH-I-NAISYIIH--EVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vTlI~-D-sAv~~iM~--~Vd~VivGA 530 (658)
+.|+|-+-..++..+|......|. +|++. .|.+.+ ..+...+...|++++++. | ..+...+. +..+|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 556665555566555555544443 45543 455544 344455667788887753 2 23444443 3444443
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+. .+|.++. --.|+-+||.++++++|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3332 2455554 23677789999998876
No 82
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=58.01 E-value=1.5e+02 Score=31.07 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=37.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
-+++.-++-..+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 191 ~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 191 VLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 344445555556667778899999999999999988888889999964
No 83
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=57.65 E-value=1.5e+02 Score=32.44 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=29.3
Q ss_pred hHHHHHhhhccEEEEcce----eEecCCCeeccc----chHHHHHHHHhCCCCeEeec
Q 006164 514 NAISYIIHEVTRVFLGAS----SVLSNGTVCSRV----GTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 514 sAv~~iM~~Vd~VivGAd----aVlaNG~VvNKi----GT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-.++.+=-.+|+..+ .+..||.+.|-- +=...+++|.+.+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 445555655555666655 344455544422 24567788888888766654
No 84
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=57.54 E-value=91 Score=33.96 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=53.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|++-+-..++..+|..+...|. +|++.. +.+.+. .+. ..+...|+.+.++... .+...+. +...|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 556665555666666655544443 454433 444443 333 3455789999888543 3333333 3445544
Q ss_pred ceeEec-CCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.+.. .|.+.. --.++-+||.|+++++|=
T Consensus 132 -e~~~np~g~~~d---l~~i~~la~~~g~~livD 161 (369)
T cd00614 132 -ESPTNPTLKVVD---IEAIAELAHEHGALLVVD 161 (369)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 23322 233332 235777899999988873
No 85
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=57.40 E-value=1.2e+02 Score=33.41 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=50.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhhhccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~~Vd~VivGA 530 (658)
+.|++-+...++..++. ..+.| -+|++.+ +.+.|. ++. ..+...|+.++++... .+-..+..=+++|+-.
T Consensus 64 ~~l~~~sG~~al~~~l~-ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVITR-LLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 45555554555654443 44333 3566643 445443 333 3456689999888632 2322332212333322
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.---..|.+.. -..++-+||+|+++++|=+
T Consensus 139 ~psnptg~v~d---l~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 139 SPTNPLQKIVD---IRKISEMAHAQNALVVVDN 168 (378)
T ss_pred CCCCCCCeeec---HHHHHHHHHHcCCEEEEEC
Confidence 11112333332 3457778999998887643
No 86
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=57.37 E-value=1.5e+02 Score=31.50 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=53.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhhc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~V 523 (658)
+...++|-|.+.+...++..+... ++.-+|++.+.. +-. +.+.+...|+++..+.. ..+-..+.+-
T Consensus 76 ~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~--h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 76 DAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA--HFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc--hHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC
Confidence 345677766666665555555432 123467776642 211 22333446888877742 1233333322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++.|+..+.-...|.+. . --.++-+|++|++.|+|=
T Consensus 152 ~~~vi~~~~~~~tG~~~-~--l~~I~~l~~~~g~~livD 187 (371)
T PRK13520 152 TIGIVGIAGTTELGQVD-P--IPELSKIALENGIFLHVD 187 (371)
T ss_pred CEEEEEEcCCcCCcccC-C--HHHHHHHHHHcCCCEEEE
Confidence 33333333223345443 3 345777899999988873
No 87
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=57.33 E-value=12 Score=41.73 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
.|..+.-++.. +-..++.+|.||.|=-++- .....--..+.||-.|+.|+|||+++|.+....
T Consensus 266 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 266 PGIDLVLELLD------------LEQKIKDADLVITGEGRLD--RQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred cHHHHHHHhhC------------HHHHhcCCCEEEECCCccc--ccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 57777655543 2445678999999977763 334444467888999999999999999976443
No 88
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=57.14 E-value=2.9e+02 Score=30.09 Aligned_cols=133 Identities=16% Similarity=0.049 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccC--CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEe-CCCCCch
Q 006164 419 SEAKATLHSDIERF--INEKIILADRVIVKHAVTKIRD--GDVLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHE 493 (658)
Q Consensus 419 ~eaKe~L~e~Id~f--i~E~i~~a~~~Ia~~a~~~I~d--gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~-ESRP~~E 493 (658)
.+.++...+.++.| -.+ ..+.+-+..+++..- ..+++|-|...++..++......| -+|++. -.+|.+-
T Consensus 36 ~~~~~~~~~~~~~~~g~~~----~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~~ 109 (346)
T TIGR03576 36 FKIDEEDLELLETYVGPAI----FEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAHP 109 (346)
T ss_pred hhHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCch
Confidence 45566666666665 111 222333444444432 456666666666666555444333 356553 2355543
Q ss_pred HHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 494 GKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 494 G~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.. ..+.-.|.++....|-.--...++..+|++- .-..+|+++.+.=-..++-+|+.|++.|+|
T Consensus 110 s~~--~~~~l~ga~~~~~~~l~~l~~~~~~~lIiit--g~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 110 SIP--RSCKLAGAEYFESDELSELKKIDGTSLVVIT--GSTMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred hHH--HHHHHcCCEEeccCCHHHHhhCcCceEEEEE--CCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 222 1222345554333221110011233445441 112355565544444566678889987765
No 89
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=56.53 E-value=11 Score=37.62 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHH-HhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 495 KLLLRRLVRKGLSCTYTHINAISY-IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~-iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..++..|.+.|++|++...+++.. -+...|+|||||.--+ |..-..++.+.-.-...-.+.|+-+.|
T Consensus 19 ~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 19 EYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 355688999999999999999887 5678999999996543 666666777766666666788876554
No 90
>PRK05973 replicative DNA helicase; Provisional
Probab=56.37 E-value=2.3e+02 Score=29.76 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=58.6
Q ss_pred ccCCCEEEeeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCE-------EEEc-ch-HHH
Q 006164 452 IRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC-------TYTH-IN-AIS 517 (658)
Q Consensus 452 I~dgdvILT~g~S-----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~v-------TlI~-Ds-Av~ 517 (658)
+..|+.+|..|.+ +....++.++.++|.+.-.|-.|-.| ..+..++...|++. .+.. |. ...
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCHH
Confidence 4568888888763 33456667776666543333344443 24555666666642 1111 11 122
Q ss_pred HHhh------hccEEEEcceeEecCCCeecccch--HHHHHHHHhCCCCeEeecccccc
Q 006164 518 YIIH------EVTRVFLGASSVLSNGTVCSRVGT--ACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 518 ~iM~------~Vd~VivGAdaVlaNG~VvNKiGT--~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
+++. +++.|||=-=..+..+.--...+. ..+-..||.+|+|++++++...-
T Consensus 137 ~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 3332 355555532111211110012222 33566899999999999876544
No 91
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.43 E-value=58 Score=30.51 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=53.3
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.|..||.+|.+.+-..++..+++.|-+ +|+|+. |-......|+..+ .+..+.++........+.++|.||-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999998888888888877654 344443 5555566777777 566778888777778889999886543
No 92
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=54.98 E-value=1.2e+02 Score=33.07 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHhh---
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~--- 521 (658)
+.++++|-|.+.++..++....+.|. .|++. .|.+.+...+ +...|+.+.++... .+...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEPI--VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHH--HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 35788888888888666655443333 45554 3666654333 33468877776432 1111221
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .---..|.+++..--..++-+|+.|++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23444441 0001124444443345577788899987775
No 93
>PRK10342 glycerate kinase I; Provisional
Probab=54.73 E-value=15 Score=41.03 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
.|.++.-+|.. +-..|+.+|.||.|==++ |.....--....||-.|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 57777766543 244578899999997666 3344444556778889999999999999976443
No 94
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=54.38 E-value=1.7e+02 Score=32.11 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchHHHH---Hhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISY---IIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsAv~~---iM~-~Vd~VivG 529 (658)
+.+++-+-+.++..+|....+.|. +|++. ++.+.+. .+. ..+...|+.++++....... .+. +..+|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 456655555566666654444444 45553 4444433 333 45677899999886432222 222 34444431
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
... ..|.+.. --.++-+||.++++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233322 24567778999998876
No 95
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=53.63 E-value=2.8e+02 Score=30.04 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=50.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEcch-----HHHHH---hh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN-----AISYI---IH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vTlI~Ds-----Av~~i---M~- 521 (658)
.++++|.|.+..+..++..+.. .+..-+|++.+.. +-+.... +. ....|+.+.++... .+-.+ +.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEME--HHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcch--hhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3677776666666444443211 1233466665432 2222222 22 33578887777421 11222 22
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+...|++- +.-...|.+.. -..|+-+|+.|+++++|=+
T Consensus 159 ~~~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~ 196 (403)
T TIGR01979 159 KTKLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVDG 196 (403)
T ss_pred CCeEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEEc
Confidence 33344332 22222344443 3457778899999887743
No 96
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=53.62 E-value=16 Score=40.60 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=45.0
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
..|..+.-++.+ +-..++++|.||.|==++-+. ++..|+ ...+|-+||.|+|||+++|.+.+-+
T Consensus 266 ~~Gi~iV~~~~~------------le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 266 KSGIEIVLEATN------------LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred cccHHHHHHHhC------------HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 446777655544 345678999999997776432 333333 4567889999999999999976443
No 97
>PRK02947 hypothetical protein; Provisional
Probab=53.60 E-value=2.8e+02 Score=28.86 Aligned_cols=38 Identities=8% Similarity=-0.098 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHH-----------HHHhhhccEEEEc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAI-----------SYIIHEVTRVFLG 529 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv-----------~~iM~~Vd~VivG 529 (658)
.+=.++++.+.+.|+++..|+++.- +.+.+.+|.||.-
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~ 168 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDN 168 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEc
Confidence 3455677999999999999999763 5677778988853
No 98
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=53.55 E-value=1.5e+02 Score=26.24 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=36.4
Q ss_pred HHHHhCCCCEEEEcc---h---HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 499 RRLVRKGLSCTYTHI---N---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 499 ~eL~~~GI~vTlI~D---s---Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..+.+.|++++.+.. + ++..+.. ++|.|++|...=-..+. --.|+..-. +.++.++||+|+
T Consensus 63 ~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~--~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 63 RIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD--RLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc--eecCchHHH-HHhcCCCCEEEe
Confidence 344567888876542 2 2333333 59999999985332211 224664444 457788999885
No 99
>PTZ00357 methyltransferase; Provisional
Probab=52.88 E-value=1.4e+02 Score=36.35 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=48.2
Q ss_pred EEEeeC--ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh----------CCCCEEEEcchHHHHHhh---
Q 006164 457 VLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR----------KGLSCTYTHINAISYIIH--- 521 (658)
Q Consensus 457 vILT~g--~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~----------~GI~vTlI~DsAv~~iM~--- 521 (658)
+|++.| ++..|..+|+.+.+.|.+++||++|=.|..-=.- ...+.+ .|-.|++|...|=.+-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~t-llr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFT-RMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHH-HHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 466665 6789999999999999999999999886532111 112111 155699998777666433
Q ss_pred ----------hccEEE
Q 006164 522 ----------EVTRVF 527 (658)
Q Consensus 522 ----------~Vd~Vi 527 (658)
++|.||
T Consensus 782 ~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIV 797 (1072)
T ss_pred ccccccccccccceeh
Confidence 578876
No 100
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=52.69 E-value=1.4e+02 Score=33.30 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=56.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..+|..+.+.|. +|++. .+.+.|. .+. ..+...|+.++++... .+-..+. +..+|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 567776666777666666655444 55554 3555553 332 4567789999888532 2333332 4555555
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+... .+|.+.. --.++-+|++|+++++|=
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 2221 1233332 245677899999988773
No 101
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=51.98 E-value=1.1e+02 Score=32.96 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=52.8
Q ss_pred ccCCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+...++++|.|.+.++..++... ...|. .|++ + .|.+.+...+. ...|+++..+.+ ... +.. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~~--~~~g~~~~~~~~--~~~-l~~-----~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPGD--VVVI-P-ELAYPTYEVGA--RLAGATVVRADS--LTE-LGP-----QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcccHHHHH--HhcCCEEEecCC--hhh-CCc-----ccc
Confidence 44568999999999885443333 23332 4444 4 36666555443 335887776643 111 111 122
Q ss_pred eeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 531 SSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
..|+-+ ..-|..|+. .++-+|++|++.+++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333333 355777743 566678899986654
No 102
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=51.96 E-value=3.9e+02 Score=30.06 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhhccEEEEcc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGA 530 (658)
.|..++.++....+..+.+.+.+.|....++++++.+..--..+...+...+.++.++.+ ..+..++++. ++
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577888888876665655666677876655666665443333343455555666666654 2344444432 23
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
|-++.| ..-..+|+..+||++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333322 223477999999998764
No 103
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.94 E-value=1.3e+02 Score=34.02 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=52.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcc-hHHHHH---hhhccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI-NAISYI---IHEVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~D-sAv~~i---M~~Vd~VivGA 530 (658)
.|++-+-+.++..+|....+.|. +|++..+ .+.|. .+. +.|.+.|+.++++.| .....+ +..=+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 45555445566666655554443 6666654 33443 233 456778999888852 222222 222233333 2
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.+. ..|.+.. + -.++-+||.||++|+|=+
T Consensus 162 e~~sNp~G~v~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 162 ETISNPQIDVLD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred ECCCCCCCeecC-H--HHHHHHHHHcCCEEEEEC
Confidence 2222 1233322 2 358889999999887743
No 104
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=51.75 E-value=61 Score=33.10 Aligned_cols=93 Identities=24% Similarity=0.260 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhccCCCEEEeeCCh--HHHHHHHHHHHHcCCeeEEEEeCCCCCc------hHHHHHHHHHhCCC-CEEEE
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKH------EGKLLLRRLVRKGL-SCTYT 511 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~S--saV~~vL~~A~e~gk~f~ViV~ESRP~~------EG~~La~eL~~~GI-~vTlI 511 (658)
.+.|+.+++..|.||++|- +|-+ .++..+| .+ ++.+.+. .|+--.. .|... -.|.+.|. ++++.
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~-lGiGiP~~va~~l---~~-~~~l~l~-~E~G~~g~~p~p~~~~~~-~~l~~~g~~~~~~~ 75 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVN-LGIGIPTLVANYL---PE-GIEVFLQ-SENGILGMGPAPEPGEED-PDLINAGKQPVTLL 75 (207)
T ss_pred HHHHHHHHHHhcCCCCEEE-EeecHHHHHHHHH---hc-CCeEEEE-EeCceecCccCCCCCCcC-HHHHhCCCCceeec
Confidence 4679999999999998654 5544 3443333 22 4544443 4432111 01011 24555543 33322
Q ss_pred -----cc-hHHHHHhh--hccEEEEcceeEecCCCee
Q 006164 512 -----HI-NAISYIIH--EVTRVFLGASSVLSNGTVC 540 (658)
Q Consensus 512 -----~D-sAv~~iM~--~Vd~VivGAdaVlaNG~Vv 540 (658)
.| +....++. .+|.-|+||--|-..|.+-
T Consensus 76 ~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred cCcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 22 22222333 6899999999888888765
No 105
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=51.58 E-value=2.3e+02 Score=30.77 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEcc--------hHHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHI--------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vTlI~D--------sAv~~iM~- 521 (658)
.++++|.|.+..+..++..... .+..-+|++.+ |.+-+.... ..+...|+++.++.. ..+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4577787777777555544321 12223566644 443332222 234567888887742 12222232
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++ ++.=...|.+.. -..++-+|+.|++.++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3334433 222223444432 23467788999988776
No 106
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=51.56 E-value=1.5e+02 Score=32.39 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCCeEe
Q 006164 547 CVAMVAYGFHIPVLV 561 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (658)
.++-+||+|+++|+|
T Consensus 179 ~I~~la~~~g~~liv 193 (387)
T PRK09331 179 KVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHHHHcCCEEEE
Confidence 477788888888776
No 107
>PLN02409 serine--glyoxylate aminotransaminase
Probab=51.52 E-value=1.4e+02 Score=32.94 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=50.1
Q ss_pred CEEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh-----
Q 006164 456 DVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----- 521 (658)
Q Consensus 456 dvILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~----- 521 (658)
++|++.+.+ .+++.++....+.| -+|++.+ +..-+..+...+...|+++..+... .+-..+.
T Consensus 61 ~~vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~ 136 (401)
T PLN02409 61 TPFIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNH 136 (401)
T ss_pred CEEEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCC
Confidence 444444444 34444444444333 3577766 3444555555566678888777421 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHH--HHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMV--AYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~--Ak~~~VPVyV 561 (658)
++..|++ .+.-...|.+.. -..++-+ |+.+++.++|
T Consensus 137 ~~k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 137 KIKAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred CccEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 2344444 343334554443 2234555 8888877665
No 108
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=51.41 E-value=99 Score=33.38 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=67.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
|..+..-....|..+|+++.+.|.+.-|++.+.-+..+.++|.....+.|+ .++=-|.++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 554544455555688999999998888898888876656788777778777 455455555544433322221212233
Q ss_pred CC--CeecccchHHHHHH--HHhCCCCeE
Q 006164 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (658)
Q Consensus 536 NG--~VvNKiGT~~lAl~--Ak~~~VPVy 560 (658)
-| .+++..|+...+++ |+..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 677787764
No 109
>PRK07683 aminotransferase A; Validated
Probab=51.33 E-value=1.4e+02 Score=32.64 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=51.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH---------HHHHhhhccEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIHEVTRV 526 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA---------v~~iM~~Vd~V 526 (658)
++++|.|.+.++..++....+.|. +|++ ..|.+.+...+. ...|+++.++.... +...+..-.++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 789999988888655555444443 4444 355555544432 34688888875321 22222211222
Q ss_pred EEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++ +. ..-|..|+ ..++-+|+.+++.+++
T Consensus 165 i~-----i~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV-----LP--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE-----Ee--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21 11 23456665 4567788888876553
No 110
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=51.30 E-value=1e+02 Score=33.88 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=62.7
Q ss_pred CCCEEEeeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-ch--HHHHHhh--hcc
Q 006164 454 DGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN--AISYIIH--EVT 524 (658)
Q Consensus 454 dgdvILT~g~S----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-Ds--Av~~iM~--~Vd 524 (658)
.|..|-.|+-| .++..+++...+++...+|+|+-+- ..|.+++..+...++.+.|.+ |. .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 46789999987 4566677777777777888776654 346777766556678888876 43 4455555 457
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.|++.-.-+..| +...|+..++|++++.
T Consensus 127 ~v~~~~~~~~~~-----------~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETELWPN-----------LIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecchhHH-----------HHHHHHHCCCCEEEEe
Confidence 775431111111 3345788999999864
No 111
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.26 E-value=2.9e+02 Score=29.30 Aligned_cols=45 Identities=16% Similarity=-0.113 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcce
Q 006164 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 531 (658)
-|+--.|-.++++...+.|+++..|||+..+-+-+.+|.+|....
T Consensus 186 ~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 186 FSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 344444667778999999999999999999999999999988743
No 112
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=51.23 E-value=1.9e+02 Score=26.22 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=51.7
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-------HH---h--
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-------YI---I-- 520 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-------~i---M-- 520 (658)
....+++|.|.+.++..++..+... ..+|++.+. .+.|... ..+...|.++.++....-. .+ .
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLGP--GDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 4456777777777776666555432 345666552 2222221 3445667777766422110 11 1
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+...|++.. ...+++..... -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 1333333332 12223333322 5678888999998886
No 113
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=51.14 E-value=82 Score=31.73 Aligned_cols=75 Identities=27% Similarity=0.347 Sum_probs=44.6
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEc----------chHHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (658)
.||.-|+++.++.+|....+.+....|.+ +-.+|..++. ....+.||++..+. +..+...++ .+
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47777889998777766665444455443 3455655443 44567799988754 223344444 57
Q ss_pred cEEEE-cceeEe
Q 006164 524 TRVFL-GASSVL 534 (658)
Q Consensus 524 d~Viv-GAdaVl 534 (658)
|.+|+ |-..++
T Consensus 81 D~iv~~~~~~il 92 (190)
T TIGR00639 81 DLVVLAGFMRIL 92 (190)
T ss_pred CEEEEeCcchhC
Confidence 77765 333433
No 114
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.99 E-value=1.5e+02 Score=33.69 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=57.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcc----hHHHHHhhhccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~D----sAv~~iM~~Vd~VivG 529 (658)
..|+|-+-..++..+|..+.+.|. +|++ +.+.+.|- .+. ..|...|+.++++.. ..+...+..=+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 355554555566556655544443 6666 44555543 443 447889999999853 345555554445555
Q ss_pred ceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.. .| ... -+---.++-+||.||++++|=
T Consensus 153 ~e~p-gn--P~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 153 AESL-GN--PAMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred EEcC-CC--ccccccCHHHHHHHHHHcCCEEEEE
Confidence 3432 21 111 113567888999999988763
No 115
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=50.70 E-value=1.7e+02 Score=31.52 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHH-hCCCCEEEEcc--------hHHHHHh-hh
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV-RKGLSCTYTHI--------NAISYII-HE 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~-~~GI~vTlI~D--------sAv~~iM-~~ 522 (658)
.++++|.+.+..++.++..... ....-+|+++...- .+.... .++. ..|+++++|.. ..+...+ ++
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~--~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~ 139 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEH--PSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD 139 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSH--HHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhccccccccccccccccccc--cccccccccccccchhhhccccccccchhhhhhhhhhhccc
Confidence 5677787777777666666521 22333666655432 333433 4444 78999998864 2233333 35
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.|++-+ .-..+|. .+. --.++-+||++++.++|=
T Consensus 140 ~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~vD 175 (371)
T PF00266_consen 140 TRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVVD 175 (371)
T ss_dssp ESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEEE
T ss_pred cceEEeec-ccccccE-Eee--eceehhhhhccCCceeEe
Confidence 66665543 2234554 443 446778889999888873
No 116
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=50.47 E-value=41 Score=40.04 Aligned_cols=50 Identities=32% Similarity=0.385 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEE-eCCCCCch-HHHHHHHHHhCCCCEEEEc
Q 006164 462 GSSSAVEMILQHAHELGKQFRVVI-VDSRPKHE-GKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~E-G~~La~eL~~~GI~vTlI~ 512 (658)
+.|..| ..|.+|+++||+..|.| +-.|=..| -...|+.|.++|+.|.|-.
T Consensus 382 ~dSpIV-~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 382 KDSPIV-RALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCHHH-HHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 446777 55677778899887766 22333223 2355899999999998853
No 117
>PRK05443 polyphosphate kinase; Provisional
Probab=50.41 E-value=45 Score=40.18 Aligned_cols=50 Identities=30% Similarity=0.284 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEEcc
Q 006164 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 463 ~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vTlI~D 513 (658)
.|..+ ..|..|+++|+..+|+|---.+..| ....+++|.++|+.|.|-..
T Consensus 379 ~s~iv-~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 379 DSPIV-DALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred CHHHH-HHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 34555 6788888999998888755444444 34556899999999977433
No 118
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=50.40 E-value=2.7e+02 Score=29.79 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=54.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHH-HHHHH-hCCCCEEEEcch--------HHHHHhh-hc
Q 006164 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLL-LRRLV-RKGLSCTYTHIN--------AISYIIH-EV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~L-a~eL~-~~GI~vTlI~Ds--------Av~~iM~-~V 523 (658)
.+++|.|.+.++..++..+... ++.-+|++.+ +.+-+... .+.+. ..|+.+.+|... .+-..+. ++
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5667777777776666555441 1334566654 33333222 23333 678888877422 1222222 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.|++. +.--..|.+.. + -.++-+|+.|+++++|=+
T Consensus 141 ~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D~ 176 (373)
T cd06453 141 KLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVDG 176 (373)
T ss_pred eEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEEh
Confidence 455442 22222454433 2 367888999999888743
No 119
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=50.03 E-value=2.4e+02 Score=30.67 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEcch--------HHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vTlI~Ds--------Av~~iM~- 521 (658)
.++++|-|.+..+..++..... ....-+|++.+ |.+-+.... ......|++++++... .+...+.
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3566676666666554444321 12234677754 344333222 2235579988887421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+...|++ ++.-...|.+.. ...|+-+|+.+|++|+|=
T Consensus 160 ~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD 196 (401)
T PRK10874 160 RTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMVD 196 (401)
T ss_pred CcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEE
Confidence 3333333 332223444321 235777899999887763
No 120
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=49.97 E-value=65 Score=38.01 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=59.4
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE----cc-hHHHHHhh--hccEEEEcceeEe-cCCC----------ee
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HI-NAISYIIH--EVTRVFLGASSVL-SNGT----------VC 540 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI----~D-sAv~~iM~--~Vd~VivGAdaVl-aNG~----------Vv 540 (658)
...+|+|+-.. .+=|+.|++.|.+.|+++++. +| ..+...+. +.|.||=-|--.. .+-+ -+
T Consensus 379 ~~mkiLVtGa~-G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGRT-GWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECCC-chHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 34567766554 455999999999999888543 22 24445555 5788876653221 0111 27
Q ss_pred cccchHHHHHHHHhCCCCeEeecccccc
Q 006164 541 SRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
|-.||..++-+|+.++++++++.-.+=|
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 8999999999999999998877544433
No 121
>PRK05968 hypothetical protein; Provisional
Probab=49.92 E-value=2e+02 Score=31.85 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=51.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcch---HHHHHhhhccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~~Vd~VivGA 530 (658)
..|++-+.+.++..+|....+.|. +|++.+ +.+.+ ..+. ..+...|++++++... .+-..+++...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 455554444455444544444443 566544 34433 3333 4567789999888432 333334455555552
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
. ..|-+....=-..++-+||.|+++|+|=
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMID 183 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 1 2222222222234677889999988773
No 122
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.72 E-value=1e+02 Score=34.80 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEe
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVl 534 (658)
+..|+.+|.+..=..+.+.+.+.| +.|.+.|.++...=..+..+|.+.||.+.+-.+. ...+.+.|.||+.. +|-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Sp-gi~ 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTP-SMR 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECC-CCC
Confidence 567899988755334444455445 5889999876433223445688899877654432 23346788888763 222
Q ss_pred cCCCeecccchHHHHHHHHhCCCCeE
Q 006164 535 SNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
.+ ...-..|++.+||++
T Consensus 89 ~~---------~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 89 ID---------SPELVKAKEEGAYIT 105 (458)
T ss_pred CC---------chHHHHHHHcCCcEE
Confidence 22 245556677777776
No 123
>PRK13938 phosphoheptose isomerase; Provisional
Probab=49.57 E-value=2.7e+02 Score=28.18 Aligned_cols=36 Identities=3% Similarity=-0.168 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
+=..+++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 128 ~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 128 SVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 444566888888999999988777777777787764
No 124
>PLN02828 formyltetrahydrofolate deformylase
Probab=49.54 E-value=65 Score=34.44 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=43.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCC-CchHHHHHHHHHhCCCCEEEEcc-------hHHHHHhhhccEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRP-KHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIHEVTRV 526 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP-~~EG~~La~eL~~~GI~vTlI~D-------sAv~~iM~~Vd~V 526 (658)
-.||.-|+++.+..+|.. ++.|. ...|.++=|.+ ...+..+.....+.|||+.+++. ..+...+.++|.|
T Consensus 73 iavlvSg~g~nl~~ll~~-~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHR-WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHHh-hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 357888999999776654 44554 34544444433 22233444455778999998753 1334445567777
Q ss_pred EEc
Q 006164 527 FLG 529 (658)
Q Consensus 527 ivG 529 (658)
++-
T Consensus 152 VLA 154 (268)
T PLN02828 152 VLA 154 (268)
T ss_pred EEe
Confidence 664
No 125
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=49.46 E-value=1.2e+02 Score=33.01 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=59.6
Q ss_pred HHHHhcc--CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhcc
Q 006164 447 HAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 447 ~a~~~I~--dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (658)
.+.+++. +-.+|..+|.+..-+.-++........-+|+|. +|-...-.+|+.++.+.|+++....+.. .++.++|
T Consensus 118 laa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~--eav~~aD 194 (325)
T TIGR02371 118 VAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPR--EAVEGCD 194 (325)
T ss_pred HHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHH--HHhccCC
Confidence 3444443 447888889886543333322222222345555 4444445577777878888877765443 4558999
Q ss_pred EEEEcc---ee-----EecCCCeecccchHH
Q 006164 525 RVFLGA---SS-----VLSNGTVCSRVGTAC 547 (658)
Q Consensus 525 ~VivGA---da-----VlaNG~VvNKiGT~~ 547 (658)
.|+.-. +- .+..|..+|-+|++.
T Consensus 195 iVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 195 ILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 998755 22 356788999999763
No 126
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=49.26 E-value=1.1e+02 Score=35.23 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHHHH
Q 006164 375 RDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERFI 433 (658)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~fi 433 (658)
..|.+.|.-+-++...-.|+|+.+ |||..-+-..++.- +.+.+.+|+.+...++-+.|+
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~~ 296 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKYR 296 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHHH
Confidence 456667777777777788999875 99988776666541 112367888888888888776
Q ss_pred HHHHHHHHHHHHHHHHH---hccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006164 434 NEKIILADRVIVKHAVT---KIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 434 ~E~i~~a~~~Ia~~a~~---~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
+. +...|..|... +=..|-..+-|||+ .-|...|+-++-.|+ .||=.++-..|
T Consensus 297 ~~----a~~sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdp 370 (561)
T COG2987 297 KL----ARASMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVENAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDP 370 (561)
T ss_pred HH----HHHHHHHHHHHHHHHHHcCCeeeecchHHHHHHHhccccccccCCcchHHhhhhhhhcCcCCeeEEEecCCH
Confidence 43 66777777543 33467777777765 234444555554454 46655555555
No 127
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=48.92 E-value=76 Score=32.18 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=44.7
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~V 523 (658)
.||.-|+++.+..++...++.+....|.+ +--++...+ .....+.||+|..+.. ..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 47777889998777666655444455443 233344433 3455678999988652 23334443 58
Q ss_pred cEEEE-cceeEec
Q 006164 524 TRVFL-GASSVLS 535 (658)
Q Consensus 524 d~Viv-GAdaVla 535 (658)
|.+|+ |-..++.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 87766 4445543
No 128
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=48.71 E-value=3.6e+02 Score=28.68 Aligned_cols=100 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhh---ccE
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE---VTR 525 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~---Vd~ 525 (658)
+...+.|++.+.+..+..++....+.| -.|++.+ |.+.+...+.. ..|.++..+. | ..+-..+.. ..+
T Consensus 97 ~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~~--~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~i~~~~~~~~ 170 (385)
T PRK05958 97 FGAERALLFSSGYAANLAVLTALAGKG--DLIVSDK--LNHASLIDGAR--LSRARVRRYPHNDVDALEALLAKWRAGRA 170 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEeC--ccCHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhccCCCe
Confidence 333456666554544444443333233 3455533 55544333333 3577766663 2 344444543 233
Q ss_pred EEEcceeEec-CCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++ ...+.. .|.+.. -..++-+|+.|++.+++
T Consensus 171 lvi-~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 171 LIV-TESVFSMDGDLAP---LAELVALARRHGAWLLV 203 (385)
T ss_pred EEE-EEecccCCCCcCC---HHHHHHHHHHhCCEEEE
Confidence 333 222322 222211 34677889999987765
No 129
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=48.68 E-value=60 Score=38.34 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=60.0
Q ss_pred cCCCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-----CC----CCEEEE-cc----hHHH
Q 006164 453 RDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-----KG----LSCTYT-HI----NAIS 517 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-----~G----I~vTlI-~D----sAv~ 517 (658)
.+|.+||+.|-+.-+. .+++++.+.| ++|+++. |-......+..+|.+ .| ..++++ .| ..+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4688999998765543 3445555555 4666553 332333344444433 12 123332 12 2344
Q ss_pred HHhhhccEEEEcceeEecC-----C-CeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 518 YIIHEVTRVFLGASSVLSN-----G-TVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 518 ~iM~~Vd~VivGAdaVlaN-----G-~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
..+..+|.||.-|-....+ + .-+|-.|+..+.-+|+.+++.-||+.-+.
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 4566788877654221100 0 11356788888888888888766665543
No 130
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=48.68 E-value=87 Score=32.11 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=46.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEc----------chHHHHHhh--h
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~ 522 (658)
.||.-|+++.++.++.. .+.|. +.+ ++|+-++|...+.+++ .+.||++..+. +..+...|. +
T Consensus 3 ~vl~Sg~Gsn~~al~~~-~~~~~l~~~i~~visn~~~~~~~~~A---~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDA-CLDGRVNGDVVVVVTNKPGCGGAEYA---RENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHHHH-HHcCCCCeEEEEEEEeCCCChHHHHH---HHhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 57888999999765554 44453 444 4455677888776655 45599997653 234444455 5
Q ss_pred ccEEEE-cceeEe
Q 006164 523 VTRVFL-GASSVL 534 (658)
Q Consensus 523 Vd~Viv-GAdaVl 534 (658)
+|.+|+ |-..++
T Consensus 79 ~Dliv~agy~~il 91 (207)
T PLN02331 79 VDFVLLAGYLKLI 91 (207)
T ss_pred CCEEEEeCcchhC
Confidence 888877 444443
No 131
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=48.65 E-value=25 Score=35.35 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q 006164 197 KAERRAIQEAQRAAKAAAKAEGIKT 221 (658)
Q Consensus 197 kAERRa~QEaqRAaKaa~k~~~~~~ 221 (658)
-+|+.|.|++||++|.++|.+...+
T Consensus 103 laeakarv~a~r~~q~a~k~e~a~a 127 (208)
T COG3109 103 LAEAKARVQAQRAEQQAKKREEAPA 127 (208)
T ss_pred HHHHHHHHHHHHHHHHHhccccccc
Confidence 4789999999999999999887774
No 132
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=48.63 E-value=4.3e+02 Score=29.66 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC-CeeEEEEe-CCCCCchHHHHHHHHHhCCCCE--E---EEc
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIV-DSRPKHEGKLLLRRLVRKGLSC--T---YTH 512 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g-k~f~ViV~-ESRP~~EG~~La~eL~~~GI~v--T---lI~ 512 (658)
..+.|.+ ..+++ .|..++.++....+..++..+.+.| ...-+..+ -..+..++..+.+++...|++. . ++.
T Consensus 280 ~~~~l~~-~~~~l-~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (426)
T cd01972 280 VAPEIEE-LRKAL-KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTV 357 (426)
T ss_pred HHHHHHH-HHHHh-CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeee
Confidence 3334443 23344 5777777776665556666677778 54433323 2344444444445677777642 2 445
Q ss_pred ch----HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 513 IN----AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 513 Ds----Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|+ .+..+++ +.|.+|.+. +- .. ...|+..|+|++-+
T Consensus 358 ~~~~~~e~~~~l~~~~pDl~i~~~-------~~------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 358 SNGQYYQFYNLLKRVKPDFIIFRH-------GG------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEcC-------CC------cc-HHHHHhcCCCEEec
Confidence 54 3444455 456554432 11 11 12347799999866
No 133
>PLN02778 3,5-epimerase/4-reductase
Probab=48.45 E-value=67 Score=33.93 Aligned_cols=25 Identities=20% Similarity=0.099 Sum_probs=21.5
Q ss_pred ecccchHHHHHHHHhCCCCeEeecc
Q 006164 540 CSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.|-.||..++-+|+++++.+++..-
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS 110 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYAT 110 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEec
Confidence 6788999999999999999877643
No 134
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=48.05 E-value=2.1e+02 Score=31.61 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=50.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchHHHHHhh----hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivGA 530 (658)
.|+|-+-+.++..+|......|. +|++. .|.+.+. .+. ..+...|+.+.++.......+.. +..+|++-
T Consensus 77 av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le- 151 (391)
T TIGR01328 77 AVATSSGMGAIAATLLTILKAGD--HLISD--ECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE- 151 (391)
T ss_pred EEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE-
Confidence 45544444555555544443343 45553 3444433 333 44667899988886443333332 33333321
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.-.-..|.++. --.++-+||+++++++|=
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~livD 180 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKVIVD 180 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEEE
Confidence 11112444433 234677789999988873
No 135
>PRK07568 aspartate aminotransferase; Provisional
Probab=47.86 E-value=1.7e+02 Score=31.69 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=50.9
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---h--------HHHHHhh
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N--------AISYIIH 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---s--------Av~~iM~ 521 (658)
....+++|.|.+.++..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+.. . .+...+.
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 87 EPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred CcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 34467888888877755554443333 3566654 6554332 224567888776641 1 1112221
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++.+|++ .| .-|..|+ ..++-+|+++++.+++
T Consensus 161 ~~~~~v~i------~~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 161 PKTKAILI------SN--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccceEEEE------EC--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 2333322 22 2366665 4467778889987664
No 136
>PRK06234 methionine gamma-lyase; Provisional
Probab=47.58 E-value=1.9e+02 Score=32.12 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=50.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..+|......|. +|++.+ |.+.+. .+. ..+...|++++++... .+-..+. +..+|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 455555555566555554444444 566544 555443 333 4567789999888533 2322332 33344432
Q ss_pred ceeEecCCCeecccchHHHHHHHHhC--CCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
.---..|.+.. --.++-+|+.| ++.|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112344333 34677788887 666554
No 137
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=47.55 E-value=1.7e+02 Score=31.38 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=50.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HH-HHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI-SYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av-~~iM~ 521 (658)
+...++++|.|-+.++..+++ +...| .|++. .|.+..... .+...|+++..+... .+ ..+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYRR--ALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHHH--HHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 334567888887777755554 44333 45444 365544332 345568877766321 11 11123
Q ss_pred hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++.+|++. ..-|..|. ..++-+|+.|++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 45555541 34566664 3456678888877664
No 138
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=47.53 E-value=3.4e+02 Score=28.49 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHc------------CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c-------h
Q 006164 455 GDVLLTYGSSSAVEMILQHAHEL------------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-------N 514 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~------------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-D-------s 514 (658)
...|.|.|-+.++...+..+... +....|++.+ +.+-....+ +...|+++..+. | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46888888887765445444321 1233444433 333332222 222377777764 2 1
Q ss_pred HHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 515 AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 515 Av~~iM~~------Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+-..+.+ -.++++....-...|.+.. -..++-+|+.|+++++|=
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEe
Confidence 23333433 3345554444444555422 356788899999988874
No 139
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=47.52 E-value=88 Score=35.24 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=61.6
Q ss_pred cCCCEEEeeCChHHHHHHHHH---HHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-----Hhh--
Q 006164 453 RDGDVLLTYGSSSAVEMILQH---AHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-----IIH-- 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~---A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-----iM~-- 521 (658)
...++|.|-|-+....-+|+- ++. +++.-++|+....-.. =...++.|...|.+|||+.-..=+. +.+
T Consensus 60 ~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~a-Vl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al 138 (386)
T COG1104 60 DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPA-VLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEAL 138 (386)
T ss_pred CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHH-HHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhc
Confidence 346899999988665444543 222 2244577765443211 1233477878899999996443222 222
Q ss_pred hccEEEEcceeEecCCCeecccchHH----HHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~----lAl~Ak~~~VPVyV~ 562 (658)
+=|.++|-- + .+=|-+||.| ++-+||+++++|.|=
T Consensus 139 ~~~T~LVSi--m----~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 139 RPDTILVSI--M----HANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred CCCceEEEE--E----ecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 123343321 2 3446788764 888999999999883
No 140
>PRK07503 methionine gamma-lyase; Provisional
Probab=47.43 E-value=2.1e+02 Score=31.85 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=52.6
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
.|++-+-+.++..+|......|. +|++. .|.+.+. .+. ..+...|+.++++... .+...+. +..+|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 45555445566555554433343 56653 3444332 223 4566789998887532 2333332 4445554 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.-.-..|.+.. --.|+-+|+.|+++++|=
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~lIvD 186 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKVVVD 186 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEEEEE
Confidence 22223354443 256777889999988773
No 141
>PRK09028 cystathionine beta-lyase; Provisional
Probab=47.27 E-value=1.8e+02 Score=32.52 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=54.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
++++|-|-..++..++....+.|. +|++.+ |.+.| ..++ ..|...|++++++.. ..+...+. +..+|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 556666655666666655555453 666664 34444 4455 456778999988742 33444443 44444442
Q ss_pred ceeEecCCCeecccch----HHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT----~~lAl~Ak~~~VPVyV 561 (658)
..-|..|. ..|+-+||.|++.++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23344443 4567788999987665
No 142
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=47.08 E-value=57 Score=31.14 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~V 557 (658)
+...++--.+..+...|...+.-|.+.|++|.++. +|.|+++ |.....--...++-.|+++++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCC
Confidence 33444444456677788999999999999999998 4555554 432221223345556888999
Q ss_pred CeEeec
Q 006164 558 PVLVCC 563 (658)
Q Consensus 558 PVyV~a 563 (658)
|+++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 977644
No 143
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=47.04 E-value=84 Score=31.36 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=52.8
Q ss_pred EEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhhccEEEEcceeE
Q 006164 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 458 ILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGAdaV 533 (658)
|+.+|-+..+. .++..+...+ ++|.++--.+ -...+..|.+.|+.+..... .++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCC--CCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 56777643332 2233333334 4444432222 44567889999997653322 45666677777776433221
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
. -.-.-....++-+|+..||..||...
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 1 11122345567788889999998644
No 144
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=46.89 E-value=3.7e+02 Score=28.62 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEcchH-----HHHHhhhc---cE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINA-----ISYIIHEV---TR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vTlI~DsA-----v~~iM~~V---d~ 525 (658)
.+++|.|.+.++..++....+. .-+|++.+ +.+.+..- ...+ ...|+++.++.... ...+-..+ .+
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~~--gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLKE--GDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccCC--CCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 5667777777776655543332 34666644 32322211 2223 33488887774211 11222222 23
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++-.+.--..|.+.. + -.++-+|++++++|+|
T Consensus 140 ~v~~~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVVSHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEEECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 3332222223454443 2 3477789999987776
No 145
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=46.53 E-value=2.9e+02 Score=29.49 Aligned_cols=100 Identities=13% Similarity=0.064 Sum_probs=50.9
Q ss_pred CEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhhhcc--
Q 006164 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVT-- 524 (658)
Q Consensus 456 dvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd-- 524 (658)
++|+..++ +..+..++......|. +|+|.+ +..-|..+...+...|+++.+|... .+...+.+-+
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRDG--KVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCCC--eEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44544444 5567666665543332 555554 3344555555566789998888532 1222222111
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+++.-++.=...|.+.. ...++-+|+.++++++|=
T Consensus 133 ~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 133 THVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred cEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEE
Confidence 12222211112343332 357888899998866653
No 146
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=46.40 E-value=2.2e+02 Score=29.90 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=52.1
Q ss_pred CEE-EeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------------hHHHHHh
Q 006164 456 DVL-LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (658)
Q Consensus 456 dvI-LT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 520 (658)
.++ +|-|.+.++..++..+...| -+|++. ||.+....- -+...|+.+.++.- ..+-..+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~g--d~Vlv~--~~~h~s~~~--~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGPG--DKILID--RNCHKSVIN--GLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCCC--CEEEEe--CCchHHHHH--HHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 46665555655555444333 355554 455544332 33346776666521 1233334
Q ss_pred h---hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 521 H---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 521 ~---~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
. ++..|++-.. ...|.++. --.++-+|+.|+++++|=
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livD 189 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVD 189 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEE
Confidence 2 3556666532 23565554 356888899999998874
No 147
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=46.39 E-value=2.3e+02 Score=30.25 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=64.7
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC------Cch--------HH----HHHHHHHhC
Q 006164 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KHE--------GK----LLLRRLVRK 504 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP------~~E--------G~----~La~eL~~~ 504 (658)
.+++.+.++|. +..|+.+|.+.+=..+...+...|.. ++.++|-.. ..| |. .|+++|.+.
T Consensus 19 L~G~e~~~kL~-~s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFA-DAHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhc-CCCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 36777788886 46788888765433344455555633 344444321 111 11 334666665
Q ss_pred CC--CEEEEcc----hHHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccc-ccccc
Q 006164 505 GL--SCTYTHI----NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA-YKFHE 570 (658)
Q Consensus 505 GI--~vTlI~D----sAv~~iM-~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet-yKf~~ 570 (658)
+- .++.+.+ ..+..++ .+.|.||...|.+. .| ..+.-.|+.+++|||.+... -|+++
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCC
Confidence 43 3443322 1222333 36788876666442 22 34666789999999988655 44444
No 148
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=46.31 E-value=1.1e+02 Score=33.04 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=67.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
|..+..-....|..+|+++.+.|.+.-|++.+.-+....++|.+...+.|+ .++=-|.++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 666665566666688999999998888888887766655677777777776 444444444443322222221222333
Q ss_pred CC--CeecccchHHHHHH--HHhCCCCeEe
Q 006164 536 NG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (658)
Q Consensus 536 NG--~VvNKiGT~~lAl~--Ak~~~VPVyV 561 (658)
-| .+++..|++..+++ ++..++-|.-
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~ 172 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQST 172 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEE
Confidence 46 37899998888875 6778887753
No 149
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=46.16 E-value=2.6e+02 Score=30.61 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=49.7
Q ss_pred CCEEEeeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEcc--------hHHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHI--------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vTlI~D--------sAv~~iM~- 521 (658)
.++++|.|.+..+..++.... ...+.-+|++.+. .+.+.... ..+ ...|+++.++.. ..+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 467888776666654443210 1122235666542 22222222 233 456888888742 12222232
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++- +.=...|.+.. ...++-+||.+++.|+|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444433 22233454433 23577788888887665
No 150
>PRK14012 cysteine desulfurase; Provisional
Probab=45.96 E-value=4.4e+02 Score=28.85 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=49.9
Q ss_pred CEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcch--------HHHHHhhhcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd 524 (658)
.+++|-|-+.++..+|..+.+ .+..-+|++.+ +.+..... .+.|...|+.+.++... .+-..+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 466766655566444443321 12233566643 33333222 35566679988877321 2222232223
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++++-.+.-...|.+. .+ -.++-+|+.|+++|+|
T Consensus 146 ~lv~~~~~~n~tG~~~-~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQ-DI--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCccchh-hH--HHHHHHHHHcCCEEEE
Confidence 3333222222234333 22 4577789999998887
No 151
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=45.95 E-value=1.1e+02 Score=31.73 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=54.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH----------HHh-hh
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS----------YII-HE 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~----------~iM-~~ 522 (658)
...+++|.|-+.++..++..+...| -+|++. .|.+-+. ...+...|+.+.++....-. ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 3467788777777766666554333 345553 3444333 33445567776666433211 111 14
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+..|++-. .-...|.+..----..+.-+|+.++++|+|=+
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEec
Confidence 55555533 22334544432222234467899999988743
No 152
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.92 E-value=1.1e+02 Score=27.13 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=39.3
Q ss_pred HHHHHHhCCCCEEEE------cchH--HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 497 LLRRLVRKGLSCTYT------HINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 497 La~eL~~~GI~vTlI------~DsA--v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+...|.+.|...... .... +...++++|.||+=.|.|- -.-+..+--.||.+++||+.+
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-------hHHHHHHHHHHHHcCCcEEEE
Confidence 345556667766666 3333 4555567799988766553 334556667899999999987
No 153
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=45.84 E-value=1.7e+02 Score=31.95 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=52.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---h-------HHHHHh-hhcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYII-HEVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---s-------Av~~iM-~~Vd 524 (658)
.+++|.|.+.++..+++.....|....|++. .|.+.+.... ....|+++..+.. + .+-..+ +++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4778899888886666655555543334443 5777665543 3456777766642 1 111111 2344
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeE
Q 006164 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
.|++ + .--|..|+ ..++-+|+.|++.++
T Consensus 168 ~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 168 LLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred EEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 4443 2 23466664 557777888887544
No 154
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=44.71 E-value=20 Score=39.60 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHHH--HHHHHHhCCCCEEEEc
Q 006164 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKH-EGKL--LLRRLVRKGLSCTYTH 512 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~-EG~~--La~eL~~~GI~vTlI~ 512 (658)
++|..| ..|..|.++||+..|+| |=+-++ |-.. .+++|.++|+.|.|-.
T Consensus 48 ~~S~iv-~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIV-NALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHH-HHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHH-HHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 567777 56778888999888765 555444 3333 3689999999998854
No 155
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=44.62 E-value=1.2e+02 Score=31.35 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=58.7
Q ss_pred EEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCch---HHHHHHHHHhCCCCEEEE-cchHHHHHhhhccEEEEcce
Q 006164 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHE---GKLLLRRLVRKGLSCTYT-HINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 457 vILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~E---G~~La~eL~~~GI~vTlI-~DsAv~~iM~~Vd~VivGAd 531 (658)
.|..++.+ .....+|..+.+.....+++| -..|... ..++..++.. ...+.++ .+..+..+|+.+|.|+.-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvv-K~HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVV-KPHPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEE-EECchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 34444442 345577777776655666654 4467422 2233444433 3444544 567889999999999653
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
|+ ++++=|-.+|+||+|+..++
T Consensus 207 ----nS---------tvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 ----NS---------TVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred ----CC---------HHHHHHHHcCCceEEecCcc
Confidence 33 47788889999999998764
No 156
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=44.61 E-value=82 Score=30.54 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=13.8
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCC
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES 488 (658)
|-||-....+..+|....++...++|||++.
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd 33 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDD 33 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEEC
Confidence 3344444444444444443333445555443
No 157
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=44.57 E-value=33 Score=30.21 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE----EEcch---H----HHHHhh--hccEEEEcceeEec
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT----YTHIN---A----ISYIIH--EVTRVFLGASSVLS 535 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT----lI~Ds---A----v~~iM~--~Vd~VivGAdaVla 535 (658)
.+.+...+.| |++|.+++ .++.|.+.||+|+ ++... . +..+|+ ++|+||.=-
T Consensus 4 ~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~----- 68 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP----- 68 (95)
T ss_dssp HHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE------
T ss_pred HHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC-----
Confidence 4556666655 88888753 5688999999943 33333 1 555555 789887532
Q ss_pred CCCeecc-cchHHHHHHHHhCCCCeE
Q 006164 536 NGTVCSR-VGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 536 NG~VvNK-iGT~~lAl~Ak~~~VPVy 560 (658)
++.--.. ...+.+--+|-.|+||.+
T Consensus 69 ~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 2222222 367888999999999975
No 158
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=44.48 E-value=1.2e+02 Score=32.64 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=55.7
Q ss_pred ccCCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh-hhccEEEEc
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM-~~Vd~VivG 529 (658)
+...++++|.|.+..+..++... .+.|. .|++ + .|.+-+.... +...|..+..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 55568899999999886655444 23332 4444 3 6666665544 34568877776431 1111 12333332
Q ss_pred ceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
+ ..-|..|+. .++-+|++|++.+++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 2 366788863 366778999988875
No 159
>PLN02206 UDP-glucuronate decarboxylase
Probab=43.62 E-value=95 Score=35.11 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=58.3
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 532 (658)
.+.+||..|-+--|..- ++.+.++| .+|++++.........+...+. ...++++.-......+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChhhcCCCEEEEeeee
Confidence 35789998876554333 33344444 4677765432211112212222 2345555322222334578888776642
Q ss_pred EecCCC--------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 533 VLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 533 VlaNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
...... -.|-.||..+.-+|+.++++|+.+.-.
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 211111 167789999999999999987765443
No 160
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=43.41 E-value=2e+02 Score=32.16 Aligned_cols=103 Identities=24% Similarity=0.257 Sum_probs=57.7
Q ss_pred ccCCCEEEeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch---HHHHHhh-hccE
Q 006164 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTR 525 (658)
Q Consensus 452 I~dgdvILT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~ 525 (658)
|..|.-.+.++.+. ++-..|....+.|. +|++.. .-|..-.++. +.|...||.++++... .+...+. ++.+
T Consensus 67 Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd--~iv~~~-~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~ 143 (386)
T PF01053_consen 67 LEGGEDALLFSSGMAAISAALLALLKPGD--HIVASD-DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKL 143 (386)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHS-TTB--EEEEES-SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEE
T ss_pred hhcccceeeccchHHHHHHHHHhhcccCC--ceEecC-CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceE
Confidence 34566566666653 45455555555554 444433 4566666777 4588899999999654 3333444 5666
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCC-CCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV 561 (658)
|++-. . .|= .+.-.=-..++-+||.+| ++++|
T Consensus 144 v~~Es--p-sNP-~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 144 VFLES--P-SNP-TLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEEES--S-BTT-TTB---HHHHHHHHHHTTT-EEEE
T ss_pred EEEEc--C-CCc-ccccccHHHHHHHHHHhCCceEEe
Confidence 66542 2 121 122223345777899998 77766
No 161
>PLN02656 tyrosine transaminase
Probab=43.17 E-value=2.5e+02 Score=30.96 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---h-------HHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+-+...+..+ .|+.+.++.. . .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455788898888887655554443343 55554 4555444444333 6777766642 1 1112222
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.-+++++ +.|- -|..|+. .++-+|+.|++++++
T Consensus 168 ~~~~~v~-----l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVALV-----IINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEEE-----EECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1122222 2232 3666654 356678889987765
No 162
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=43.09 E-value=2.7e+02 Score=29.22 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=49.3
Q ss_pred CEEEeeCCh---HHHHHHHHHHHHcCCe--eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-hHHHHHhhhccEEEEc
Q 006164 456 DVLLTYGSS---SAVEMILQHAHELGKQ--FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~S---saV~~vL~~A~e~gk~--f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-sAv~~iM~~Vd~VivG 529 (658)
.+++|+|-| .....+|+.+.+.... +.|++-...|.. .++-..... .-.+.+... +-+..+|..+|.+|..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~-~~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKE-YPNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHh-CCCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 467888754 2234555554443344 445443444543 233222222 224555443 4688899999999763
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.| . ...=+-..|+|+++++-
T Consensus 249 -------------~G-~-T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AG-S-TSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cc-h-HHHHHHHcCCCEEEEEe
Confidence 23 1 23334557899998854
No 163
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=43.03 E-value=78 Score=34.13 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=60.5
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhc--cEEEEcceeEec
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV--TRVFLGASSVLS 535 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~V--d~VivGAdaVla 535 (658)
||..|.+--|..-|+++.. ..+.|+.+..+.. -+.....+..++.+. |.||=-|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-----------------Ditd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAEL-----------------DITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccc-----------------cccChHHHHHHHHhhCCCEEEECcccccc
Confidence 6777776666556666543 5577887766551 122222344444432 555444332222
Q ss_pred CC--------CeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 536 NG--------TVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 536 NG--------~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
|+ -.+|-.|+..+|.+|++.|.+++-+.--|=|+-.
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~ 107 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGE 107 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCC
Confidence 22 2488999999999999999999999988888754
No 164
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=43.00 E-value=13 Score=41.57 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
.|.++.-++.. +-..+..+|.||.|-=++ |.....--..+.||-+|+.|+|||+++|......
T Consensus 267 sG~~~v~~~~~------------l~~~l~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 267 SGIDLVLELLG------------LEERLEDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp EHHHHHHHHTT------------HHHHCCC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred chHHHHHHhcC------------HHHHhcCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 46666655432 345577899999998664 2233333446667888999999999999876443
No 165
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=42.95 E-value=2.3e+02 Score=30.38 Aligned_cols=98 Identities=16% Similarity=0.042 Sum_probs=54.8
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-H---------HHHH
Q 006164 452 IRDG-DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYI 519 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-A---------v~~i 519 (658)
+..+ .+|+|.|.+.++..++......|. .-.|++ + .|.+.+...+ +...|+++..+... . +-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF-G-TPGYPVYERG--ALFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE-c-CCCCcchHHH--HHhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 3344 799999999988666554444331 124444 4 5777665544 34578877766432 1 1112
Q ss_pred hh-hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 520 IH-EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M~-~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
+. +...+ +-+ ..-|..|+ ..++-+|+.|++.+++
T Consensus 133 ~~~~~~~i-------~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKIV-------WIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEEE-------EEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 22 22222 222 24577783 4466678889987665
No 166
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=42.43 E-value=89 Score=34.55 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=40.0
Q ss_pred HHHHHhCCCCEEEEcch--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHh----CCCCeEeec
Q 006164 498 LRRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCC 563 (658)
Q Consensus 498 a~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~----~~VPVyV~a 563 (658)
+..|.+.||+|++|... .+....++.+.|| ++.++....-.|+...+.++.. ...|+.-++
T Consensus 247 a~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg 319 (356)
T PLN02683 247 AEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIA 319 (356)
T ss_pred HHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEec
Confidence 34566667777766432 3344455676764 4567777777899999998887 356777654
No 167
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=42.29 E-value=63 Score=31.15 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=63.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcce
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 531 (658)
+..|+.|..+||=.- ++.... .+..+|+|+|=.|.+.|.. +-. +.+....++++++|.||+=+.
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l~--~~~~~v~v~d~~~~~~~~~----------~~~-~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKLK--ERGAEVRVFDLNPDNIGEE----------PGD-VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHHC--CCCSEEEEEESSGGG--SS----------CT--EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHHh--cCCCCEEEEECCCCCCCCC----------CCc-CCHHHHHHHHccCCEEEEEee
Confidence 567899999997322 223332 3667999999999764432 101 188899999999999999877
Q ss_pred eEecCCCeecccchHHHHHHHHh-CCCCeEeeccccccccccccc
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYG-FHIPVLVCCEAYKFHERVQLD 575 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~-~~VPVyV~aetyKf~~~~~lD 575 (658)
++. ||+ +.- +++.. .+.++++..+|.-+++....+
T Consensus 72 Tlv-N~T-------i~~-iL~~~~~~~~vil~GpS~~~~P~~l~~ 107 (147)
T PF04016_consen 72 TLV-NGT-------IDD-ILELARNAREVILYGPSAPLHPEALFD 107 (147)
T ss_dssp HCC-TTT-------HHH-HHHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred eee-cCC-------HHH-HHHhCccCCeEEEEecCchhhHHHHHh
Confidence 765 543 322 22222 589999999999888855433
No 168
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=41.91 E-value=2.8e+02 Score=30.73 Aligned_cols=96 Identities=21% Similarity=0.139 Sum_probs=47.8
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcce
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGAS 531 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAd 531 (658)
+++.+-+.++..+|....+.|. +|++. .|.+.|.... ..+...|++++++... .+...+. +..+|++ ..
T Consensus 84 ~~~~sG~~Ai~~~l~~~l~~Gd--~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-es 158 (398)
T PRK07504 84 RATASGMAAVTAAILCQVKAGD--HVVAA--RALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ES 158 (398)
T ss_pred eEecCHHHHHHHHHHHHhCCCC--EEEEc--CCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-EC
Confidence 3343334455444433333343 55554 3566665443 2345678888887422 2222332 3333433 22
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.-..|.++. -..++-+|++++++|+|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 2223354443 35677788899987766
No 169
>PRK05967 cystathionine beta-lyase; Provisional
Probab=41.76 E-value=2.7e+02 Score=31.31 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=57.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
+.|+|.+-..++..++....+.|. +|++. .|.+.|.. +. ..|...||.++++.. ..+...+. +..+|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 567777756677666666555454 56665 56666644 44 456778999999853 23444443 44444443
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-. | -+....=-..|+-+||.++++|+|
T Consensus 157 sPs---N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 APG---S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCC---C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 211 1 122222234677788999987665
No 170
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=41.43 E-value=90 Score=34.06 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCEEEEcch--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHh----CCCCeEeec
Q 006164 496 LLLRRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCC 563 (658)
Q Consensus 496 ~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~----~~VPVyV~a 563 (658)
+.+..|.+.||+|++|... ++....++...||+ +.++....-.|+...+.++.+ ...||.-++
T Consensus 218 ~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~-----vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~ 292 (327)
T CHL00144 218 QAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLI-----VEECMKTGGIGAELIAQINEHLFDELDAPIVRLS 292 (327)
T ss_pred HHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEE-----EECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEc
Confidence 3345677778888877433 34444556666654 678888888999999999887 467888776
Q ss_pred cccccc
Q 006164 564 EAYKFH 569 (658)
Q Consensus 564 etyKf~ 569 (658)
-...|.
T Consensus 293 ~~d~~~ 298 (327)
T CHL00144 293 SQDVPT 298 (327)
T ss_pred cCCCcC
Confidence 544443
No 171
>PLN02187 rooty/superroot1
Probab=41.43 E-value=2.7e+02 Score=31.61 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=52.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---h-------HHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (658)
+...++++|.|.+.++..++....+.| -.|+|.+ |.+.+... .+...|+.+..+.. . .+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 455688899998888866655554434 3455433 65555432 23456777766532 1 1211222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..+|++--=. -..|.++++-=-..++-+|+.|++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233322100 1223333333334566678888876654
No 172
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=41.40 E-value=3.8e+02 Score=28.68 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=51.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhh-cc-EE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE-VT-RV 526 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~-Vd-~V 526 (658)
+++|-+-+..++.++..+...|. +|+|+.. ..-|.++...+...|+++.++.. ..+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 45555556677666655544333 3444321 22244444445667998887742 234444432 11 22
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.-++.=...|.+ +.+ ..++-+||.|+++++|=
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEEE
Confidence 3333332334543 333 56888899999877663
No 173
>PRK08175 aminotransferase; Validated
Probab=40.93 E-value=75 Score=34.68 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=51.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chH------HHHHhh----hcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH----EVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsA------v~~iM~----~Vd 524 (658)
.+|+|.|....+..++....+.|. +|++. +|.+.+..... ...|+++..+. |.. +-..+. ++.
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRESYPKPK 166 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhccCCce
Confidence 588998888877655554444443 44443 66665544443 34688877763 211 112222 233
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
.|++ + ..-|..|+ ..++-+|++|++.+++
T Consensus 167 ~v~i-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 167 MMIL-------G-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred EEEE-------e-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3333 2 23455564 5777789999996665
No 174
>PRK05939 hypothetical protein; Provisional
Probab=40.93 E-value=3e+02 Score=30.72 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=52.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
..|++-+-..++..+|......|. +|++.+ +.+-+ ..+...|...|+.++++... .+-..+. +..+|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 345554445566566655544443 566644 44433 34445677889999888532 3333333 3444443
Q ss_pred eeEecCCCeecccch----HHHHHHHHhCCCCeEe
Q 006164 531 SSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT----~~lAl~Ak~~~VPVyV 561 (658)
+ .+-|..|. ..++-+||.|+++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 23444443 3466788999988776
No 175
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=40.90 E-value=2.9e+02 Score=30.54 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
++++|-+-..++..+|......|. +|++. .|.+.+ ..++ ..+...|++++++.. ..+...+. +..+|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 566666555666556655544443 56664 455544 3445 346678999887732 33444443 34444431
Q ss_pred ceeEecCCCeecccchH----HHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
...|..|.. .|+-+|+.++++++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 233444533 467788999988776
No 176
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.58 E-value=84 Score=33.73 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=31.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ES-RP~~EG~~La~eL~~~GI~vTlI 511 (658)
-.||..|+++.++.+| .+.+.|. ..+|.++=| +|...+. ..+.|||+.++
T Consensus 92 i~vl~Sg~g~nl~al~-~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~ 143 (286)
T PRK13011 92 VLIMVSKFDHCLNDLL-YRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHF 143 (286)
T ss_pred EEEEEcCCcccHHHHH-HHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEe
Confidence 4677778888997655 4555554 456555433 6653322 56679999887
No 177
>PRK15482 transcriptional regulator MurR; Provisional
Probab=40.07 E-value=4.4e+02 Score=27.60 Aligned_cols=43 Identities=16% Similarity=-0.053 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
++-..+-.++++.+.+.|+++..|+|+..+.+-+.+|.+|.-.
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 3334455677788999999999999998888888899998643
No 178
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=40.03 E-value=6.2e+02 Score=28.92 Aligned_cols=150 Identities=11% Similarity=0.127 Sum_probs=75.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHH
Q 006164 394 LSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473 (658)
Q Consensus 394 tsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~ 473 (658)
+-+.+.+.-++|+....-...... +.+ ++|+. ...+.|.+..-.++ .|..+..+|.+..+..+-+-
T Consensus 258 ~P~G~~~T~~~l~~ia~~~g~~~~-----e~i-------~~er~-~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~f 323 (454)
T cd01973 258 TPIGIKNTDAFLQNIKELTGKPIP-----ESL-------VRERG-IAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEF 323 (454)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCC-----HHH-------HHHHH-HHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH
Confidence 345777777777765443321111 111 12211 12233444333334 58888888887766565555
Q ss_pred HHHcCCeeEEEEeCC-CCCchHHHHHHHHHh-CCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHH
Q 006164 474 AHELGKQFRVVIVDS-RPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (658)
Q Consensus 474 A~e~gk~f~ViV~ES-RP~~EG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~ 551 (658)
+.+.|....+.++-+ .+..+.....++|.+ .+..+.++.+.-..-+...+..--.++|-++.|. .---+
T Consensus 324 l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s---------~~~~~ 394 (454)
T cd01973 324 CLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHS---------KGRYI 394 (454)
T ss_pred HHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECC---------ccHHH
Confidence 567788876666555 444445555556632 3444444544333332221110001233343221 22457
Q ss_pred HHhCCCCeEee-cccc
Q 006164 552 AYGFHIPVLVC-CEAY 566 (658)
Q Consensus 552 Ak~~~VPVyV~-aety 566 (658)
|+..+||++.+ .|.|
T Consensus 395 A~~~gip~~~~g~Pv~ 410 (454)
T cd01973 395 AIDNNIPMVRVGFPTF 410 (454)
T ss_pred HHHcCCCEEEecCCee
Confidence 88999999876 3444
No 179
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=39.89 E-value=3.3e+02 Score=30.14 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=51.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHH-HhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRL-VRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL-~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
.+++|-|.+.++..++....+.|. +|++ ..|.+.| ..+...+ ...|+.+.++.. ..+...+. +..+|++-
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 456666666677655555544443 4444 4466655 4444444 444688887632 22333332 34444442
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.++. -..++-+|+.+++.++|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11123354443 24677778889876654
No 180
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=39.89 E-value=36 Score=31.23 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCCEEEEcc--hHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 495 KLLLRRLVRKGLSCTYTHI--NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~D--sAv~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.+|..+|.+.|..+..+.. .+...+.. .+.+|++-.| +.-.....-..-.+-.+.+++||+++.++.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 3566888889999988854 45555554 7899999888 111111111222234556899999999855
No 181
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=39.80 E-value=2.2e+02 Score=31.66 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
.+++|.|-+.++..++....+.|. +|++. .|.+.| ..+. ..+...|+.++++... .+...+. +.+.|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~Gd--~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPDD--LIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 456665655666555544443333 45543 466655 3444 3344568888887532 2323332 45555543
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.++.. ..++-+|++++++|+|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111223444432 3577788999886655
No 182
>PRK12320 hypothetical protein; Provisional
Probab=39.64 E-value=56 Score=39.42 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=57.2
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE--EcchHHHHHhhhccEEEEcceeE
Q 006164 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTl--I~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+||..|-+.-+.. ++..+.++| .+|++++..+.. +...++.+.. +.|..+..++.++|.||-=|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 4778886544432 334455555 577777654321 1112322211 12344445566788888766432
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..+..-.|-.||..++-+|+.+++.++.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22222368899999999999999987776543
No 183
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=39.59 E-value=18 Score=38.09 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=22.3
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.++|.+++..|..+.+ . ...+...|.+++||+|...+.+
T Consensus 183 ~~~da~~~~~~~~~~~-----~--~~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDS-----N--FEAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp TT-SEEEE-S-HHHHH-----T--HHHHHHHCCCTT--EEESSHHH
T ss_pred ccCCEEEEECCcchHh-----H--HHHHHHHHHhcCCCEEECCHHH
Confidence 4688888887664432 1 2226778899999999876543
No 184
>PRK08618 ornithine cyclodeaminase; Validated
Probab=39.47 E-value=2.4e+02 Score=30.46 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcchHHHHHhhhccEEEEcce-
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGAd- 531 (658)
+..+|+.+|.+..-...+..+......-+|+|. +|-.....+++.+|.+ .|+++....| ...++.++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccCC
Confidence 567899999987654444433322222245555 4444456777777765 3777666544 2344578998887431
Q ss_pred ------eEecCCCeecccchH
Q 006164 532 ------SVLSNGTVCSRVGTA 546 (658)
Q Consensus 532 ------aVlaNG~VvNKiGT~ 546 (658)
..+..|..++-+|++
T Consensus 203 ~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 203 KTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCcchHHhcCCCcEEEecCCC
Confidence 334567777777765
No 185
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=39.47 E-value=3e+02 Score=30.46 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=50.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHH-hCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLV-RKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~-~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
+.|+|.|-+.++..+|....+.| -+|++.+ |.+.| ..+...+. ..|+.++++.. ..+...+. +..+|++-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 45666665666655555444333 3555543 66655 44554444 35568877631 12322332 44555552
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.++. -..++-+|+.++++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11112243333 24577788889876655
No 186
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=39.44 E-value=3e+02 Score=30.65 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=50.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|++-+...++..+|......|. +|++. .|.+.|. .+. ..+...|+++.++... .+...+. +...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 345554445556555554444443 45553 3555553 333 3466789998876532 2333332 34555542
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. ---..|.+.. -..++-+|+.|+++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112333332 23577789999998766
No 187
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=39.24 E-value=75 Score=38.25 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCCEEEEc
Q 006164 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vTlI~ 512 (658)
+.|..| ..|..|+++|+..+|+|-=-.=..|+. ..+++|.++|+.|.|-.
T Consensus 369 ~~s~ii-~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 369 KDSPII-DALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred CCcHHH-HHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 356666 667888888998888875111122333 44678999999888743
No 188
>PRK07050 cystathionine beta-lyase; Provisional
Probab=39.19 E-value=3.9e+02 Score=29.68 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=48.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
.+++|.|-+.++..+|....+ ..-+|++.+ |.+.+.. +. ..+...|+.++++.. ..+...+. +..+|++-
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le 157 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLVK--AGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE 157 (394)
T ss_pred eEEEeccHHHHHHHHHHHHhC--CCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 345554545556544444433 334566643 4444433 33 345667888887742 23444443 33333321
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. .+.-+....=-..++-+|+.++++|+|
T Consensus 158 --~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 --A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred --C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 0 111122222234567778999987775
No 189
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=38.99 E-value=1.1e+02 Score=31.24 Aligned_cols=88 Identities=19% Similarity=0.245 Sum_probs=56.5
Q ss_pred hccCCCEEEeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHHHHhh---hccE
Q 006164 451 KIRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH---EVTR 525 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~~iM~---~Vd~ 525 (658)
-+++|++++.+|.+| +| .+.-| ..+.+-+||.+|..+. ..+++ +.+.+.|++--.+.-.-+..+++ +.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi--~iE~a-~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSI--TIEWA-LAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHH--HHHHH-HhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 356899999999865 22 12333 4578889999998764 56676 78889998754444444444444 4677
Q ss_pred EEEcceeEecCCCeecccchHHHHHH
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMV 551 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~ 551 (658)
+|+| |+ -+--+-...++.
T Consensus 106 iFIG-------Gg-~~i~~ile~~~~ 123 (187)
T COG2242 106 IFIG-------GG-GNIEEILEAAWE 123 (187)
T ss_pred EEEC-------CC-CCHHHHHHHHHH
Confidence 7776 55 444444444443
No 190
>PRK09411 carbamate kinase; Reviewed
Probab=38.99 E-value=79 Score=34.38 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC-----eeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006164 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-----QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk-----~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
+.++++.+..+|+||||+.-|..++.. .+..+ .+.|.+.+|- ..=|.-|..+|.+.|++
T Consensus 35 ~ia~l~~~~~~vitHGNGPQVG~l~~~-~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 35 ALARLARSYRLAIVHGNGPQVGLLALQ-NLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHHHcCCEEEEeCCccHHHHHHHH-HHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 334455557899999999999654443 33222 2444444443 22367777899888875
No 191
>PRK08114 cystathionine beta-lyase; Provisional
Probab=38.74 E-value=1.5e+02 Score=33.39 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=54.1
Q ss_pred ccCCCEEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcc---hHHHHHhhhccEE
Q 006164 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI---NAISYIIHEVTRV 526 (658)
Q Consensus 452 I~dgdvILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~D---sAv~~iM~~Vd~V 526 (658)
+..|.--+.++.+ .++..++....+.|. +|++. ...|..-.++. +.|.+.||+|+++.. ..+...+..-+++
T Consensus 74 LEg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~-~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~Trl 150 (395)
T PRK08114 74 LEGGAGCALYPCGAAAVANAILAFVEQGD--HVLMT-GTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKV 150 (395)
T ss_pred HhCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEe-CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceE
Confidence 3456444444444 456555655555454 55555 33444445565 557788999999852 2344444432333
Q ss_pred EEcceeEecCCCeecccch----HHHHHHHHhCC--CCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGT----ACVAMVAYGFH--IPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT----~~lAl~Ak~~~--VPVyV 561 (658)
|. .+ .+.|..|. ..++-+||.++ ++++|
T Consensus 151 V~-~E------tpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 151 VF-LE------SPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EE-EE------CCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 31 11 23344332 34777888874 77665
No 192
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=38.73 E-value=4.3e+02 Score=27.38 Aligned_cols=46 Identities=17% Similarity=0.015 Sum_probs=34.3
Q ss_pred EEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 483 ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+++.-++-..+-.++++.+.+.|+++..|++ .-+.+.+.+|.+|.-
T Consensus 180 I~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 180 VLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 3344455555667778999999999999997 456777788998853
No 193
>CHL00194 ycf39 Ycf39; Provisional
Probab=38.67 E-value=1.3e+02 Score=31.87 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=58.8
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEccee
Q 006164 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAda 532 (658)
+||..|-+..+.. +++.+.++|. +|+++.-++. . +..|...|+.+.... | ..+..++..+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~----~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLR----K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChH----H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5777786655543 3445556664 5555532221 1 234445576654432 2 3556677889988864432
Q ss_pred EecCCC---eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 533 VLSNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 533 VlaNG~---VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
...+.. -+|..|+..+.-+|++++|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 135678889999999999976665444
No 194
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=38.52 E-value=5.4e+02 Score=27.77 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCCeEe
Q 006164 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
-.|+-+|+.|++.|+|
T Consensus 176 ~~i~~~~~~~~~~~iv 191 (397)
T TIGR01976 176 AAITELVHAAGALVVV 191 (397)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3566678888876665
No 195
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=38.42 E-value=2.6e+02 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=25.1
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|+||+|++..- .+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~~---~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGRS---GLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSSTT---STTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCCC---CccCCCcCCHHHHHHHcCCCCEEEe
Confidence 7999999998822 2222233334445677888999986
No 196
>PRK08462 biotin carboxylase; Validated
Probab=38.34 E-value=60 Score=36.30 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHHhCCCC---EEEEcchHHHHHhh--hccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLS---CTYTHINAISYIIH--EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~~~GI~---vTlI~DsAv~~iM~--~Vd~Viv 528 (658)
.+||..+.+..-..+++.|.+.|. +|+++.+.+.. .+..++-+....|-. -.|+....+-.+.+ ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGK--EAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 579999999876689999998774 56666555543 444444221111111 13332233333333 6899998
Q ss_pred cceeEecCC
Q 006164 529 GASSVLSNG 537 (658)
Q Consensus 529 GAdaVlaNG 537 (658)
|.+.+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544443
No 197
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.21 E-value=6.3e+02 Score=28.47 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh--CCCCEEEEcchHH---HHHhh--hccEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAI---SYIIH--EVTRV 526 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~--~GI~vTlI~DsAv---~~iM~--~Vd~V 526 (658)
.|.++..++.+..+..+-+.+.+.|-...++++......--.++...|.+ .+..+.++.+.-. ...+. +.|.+
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 57888888887666565555667787775556544333222333334444 2334444333332 22233 23433
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+|+..-..+|+..+||++.++
T Consensus 382 ----------------iG~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 ----------------IGNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred ----------------EECccHHHHHHHhCCCEEEee
Confidence 233334578999999998765
No 198
>PRK10481 hypothetical protein; Provisional
Probab=38.16 E-value=3.8e+02 Score=28.02 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=49.4
Q ss_pred HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----HHHHHhhhcc-EEEEcceeEecCCCeecccch
Q 006164 471 LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYIIHEVT-RVFLGASSVLSNGTVCSRVGT 545 (658)
Q Consensus 471 L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----Av~~iM~~Vd-~VivGAdaVlaNG~VvNKiGT 545 (658)
+..|.-.|++|-|++..- .++.+..++....|+++.+...+ ....+..-+. ..--|||.|+-++.=++.
T Consensus 122 lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~--- 195 (224)
T PRK10481 122 LVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ--- 195 (224)
T ss_pred HHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH---
Confidence 334455678888887432 24556666777779998876622 1111111111 112466666665544443
Q ss_pred HHHHHHHHhCCCCeEe
Q 006164 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
-..+.+.+..++||+-
T Consensus 196 ~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHHHHCcCEEc
Confidence 4477899999999984
No 199
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=38.09 E-value=1.3e+02 Score=32.99 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=66.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEcchHHHHHhhhccEEEEcc--ee
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGA--SS 532 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vTlI~DsAv~~iM~~Vd~VivGA--da 532 (658)
|..+.+=-...+...+.+|.+.|.+.-|+++|.-|...+.++.+.+. +.| +.+|=-|..+.+-+.. ..+|. ..
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~~ 165 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPGH 165 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCcC
Confidence 55555555566668889999999999999999999988888774443 244 4566555555554432 12232 12
Q ss_pred EecCC--CeecccchHHHHHH--HHhCCCCeEee
Q 006164 533 VLSNG--TVCSRVGTACVAMV--AYGFHIPVLVC 562 (658)
Q Consensus 533 VlaNG--~VvNKiGT~~lAl~--Ak~~~VPVyV~ 562 (658)
++.-| +++++.||+...++ +...++-|--|
T Consensus 166 ~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~ 199 (317)
T PTZ00187 166 IHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTC 199 (317)
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33345 57999997766654 55666665543
No 200
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=37.99 E-value=43 Score=35.32 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=32.2
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La 498 (658)
+||..|.++-+ .+++.+++.|..++||+++..|..-|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57777777666 778888887777999999999988776643
No 201
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.93 E-value=1e+02 Score=30.75 Aligned_cols=95 Identities=15% Similarity=0.284 Sum_probs=50.0
Q ss_pred CEEEeeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-h--HHHHHhhhc--cEE
Q 006164 456 DVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-N--AISYIIHEV--TRV 526 (658)
Q Consensus 456 dvILT~g~S----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-s--Av~~iM~~V--d~V 526 (658)
..|..|+-| .++..++.+..++....+|+++-+-| .|.+++..+...++.+.|.+. . ++..++..+ +.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 899999988 34556666666555577888877654 478888766666899999863 2 455566643 544
Q ss_pred -EEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 527 -FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 527 -ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+++.|-. .| +-..|+..|||++.+..
T Consensus 100 i~~EtElW-Pn-----------ll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 100 IWVETELW-PN-----------LLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEES-----HH-----------HHHH-----S-EEEEEE
T ss_pred EEEccccC-HH-----------HHHHHhhcCCCEEEEee
Confidence 4454433 33 66788999999998865
No 202
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=37.55 E-value=75 Score=31.71 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=47.0
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCee----cccchHHHHHHHHhCC
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC----SRVGTACVAMVAYGFH 556 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~Vv----NKiGT~~lAl~Ak~~~ 556 (658)
+-|.+...-+......+.+.|...|+++.++..... .-+.++|.+|++-- .+... ...+....-.-+...+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 556666665555455566888889988777665432 23456777776642 11111 1122222222233478
Q ss_pred CCeEeecccccc
Q 006164 557 IPVLVCCEAYKF 568 (658)
Q Consensus 557 VPVyV~aetyKf 568 (658)
+|++-+|--+-+
T Consensus 78 ~pilGIC~G~Ql 89 (200)
T PRK13527 78 LPILGTCAGLIL 89 (200)
T ss_pred CeEEEECHHHHH
Confidence 999988765543
No 203
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=37.40 E-value=1.1e+02 Score=34.94 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH-HhCCC--CEEEEcchHHHHHhh-hccEEE
Q 006164 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGL--SCTYTHINAISYIIH-EVTRVF 527 (658)
Q Consensus 455 gdvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL-~~~GI--~vTlI~DsAv~~iM~-~Vd~Vi 527 (658)
+.+||..|.++ .+..+++.+.+.+...+||.+|-.|.- ...++++ ...|. .|++|...+=-.-.+ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A--~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA--VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH--HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH--HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899998765 555666666667888999999988742 1223343 44544 578876554333333 566664
No 204
>PRK06836 aspartate aminotransferase; Provisional
Probab=37.35 E-value=3.2e+02 Score=29.85 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=53.5
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-hH-----HHHH---hh-
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NA-----ISYI---IH- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-sA-----v~~i---M~- 521 (658)
+....+|+|.|.+..+..++....+.| -.|++.+ |.+.+.. ..+...|+++.++.. .. +..+ +.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 445568888888888765555443333 3455543 7666543 234567998888742 11 1222 21
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHh------CCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~------~~VPVyV 561 (658)
++.+|++ .+---..|.++..----.++-+|+. |++.+++
T Consensus 168 ~~~~v~~-~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 168 KTKAVII-NSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 3444443 2222223444443333446656766 6765553
No 205
>PRK07550 hypothetical protein; Provisional
Probab=37.23 E-value=2.7e+02 Score=30.12 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=52.5
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-h------HHHHH---hh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-N------AISYI---IH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-s------Av~~i---M~ 521 (658)
+...++++|.|-+.++..++....+.|. +|+| ++ |.+-+... .+...|+++..+.. . .+..+ +.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv-~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAGD--EVIL-PL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCCC--EEEE-cC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 4456788888888777555544433333 4444 43 66644433 34568887766642 1 12222 21
Q ss_pred -hccEEEEc-ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivG-AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..+|++- .+ -..|.+++.-=--.++-+|++|++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23343321 10 1124433332244577788999987654
No 206
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=37.19 E-value=1.6e+02 Score=30.05 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=48.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH-----HHHHhhhccEEEEcceeEecCCCeecccch-HHHHHHHHhC
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYIIHEVTRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGF 555 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA-----v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT-~~lAl~Ak~~ 555 (658)
+|+|++..+.+.+ .+...|.+.|+.+.++.... ...++.+.|.+|++-- .|+ ..+.+. ..+.--|..+
T Consensus 2 ~ilv~d~~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGG----p~~-~~~~~~~~~~i~~~~~~ 75 (214)
T PRK07765 2 RILVVDNYDSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPG----PGT-PERAGASIDMVRACAAA 75 (214)
T ss_pred eEEEEECCCcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCC----CCC-hhhcchHHHHHHHHHhC
Confidence 6788888876655 46788899999999886442 1222456888877411 122 122332 1233344557
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|++-+|=-+
T Consensus 76 ~~PiLGIC~G~ 86 (214)
T PRK07765 76 GTPLLGVCLGH 86 (214)
T ss_pred CCCEEEEccCH
Confidence 99999777443
No 207
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=36.83 E-value=6e+02 Score=27.82 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-HHHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISY 518 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-Av~~ 518 (658)
+.+.+.+ ..+.+. |..|+.++.......+.+.+.+.|....++++......+=.++-+.|.+....+..-.|. .+..
T Consensus 258 ~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~ 335 (398)
T PF00148_consen 258 AEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEE 335 (398)
T ss_dssp HHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHH
T ss_pred HHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHH
Confidence 4444444 334444 788888988766556666666777766666655554332233334444442222222232 4444
Q ss_pred Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 519 iM~~--Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.+ .|.+| |+..-..+|+..++|++.++
T Consensus 336 ~l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 336 LLEELKPDLLI----------------GSSHERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HHHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-S
T ss_pred HHHhcCCCEEE----------------echhhHHHHHHhCCCeEEEe
Confidence 5554 66553 33445567888888888765
No 208
>PRK06108 aspartate aminotransferase; Provisional
Probab=36.70 E-value=3.1e+02 Score=29.38 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-----------HHHHHh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------AISYII 520 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-----------Av~~iM 520 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+.+.. ..+...|+++..+... .+-..+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPGD--EVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 3445678888888887655554443333 45553 35444332 2345678887776431 111222
Q ss_pred h-hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 521 H-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
. ++.+|++ + ..-|..|+. .++-+|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 1 2333333 2 234666643 366678888886654
No 209
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.65 E-value=2.5e+02 Score=31.64 Aligned_cols=98 Identities=23% Similarity=0.299 Sum_probs=51.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
..++|-+-+.++..+|..+.+.|. +|++.+ +.+.| ..+. ..|...|++++++.- ..+-..+. +...|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 344443334456555555544443 455543 33333 3333 334446888887741 23444443 4555665
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..---..|.++. -..++-+|+.|+++++|
T Consensus 150 esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 221133455444 36677789999988776
No 210
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=36.35 E-value=4.9e+02 Score=28.90 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=53.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEcch-------HHHHHh-hhccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN-------AISYII-HEVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vTlI~Ds-------Av~~iM-~~Vd~ 525 (658)
.+++|.|.+.+++.++.. ....+.-+|++.+ |.+....-+ ..+ ...|+++.++... .+-..+ +++..
T Consensus 131 ~v~~~~g~t~~~~~~~~a-~~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALMA-VRITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHHH-HHhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 466777666666555543 3212334677754 444333333 333 3468988888532 122222 24444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|++.. . -..|.+ .. --.++-+||++++.|+|.
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv~ 239 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIVG 239 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEEE
Confidence 54443 2 334433 33 345788999999999883
No 211
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=36.31 E-value=1.3e+02 Score=27.51 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=48.7
Q ss_pred EEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhh--hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIH--EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~--~Vd~VivGA 530 (658)
.||.+|++-- |+.|-.+.. ..+.-+|||.-..|..... -.+.-+. | ..+..+.. ++|.||+|-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~----------~~~~~~~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL----------GKNVPIDITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT----------SEEE-S-TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh----------ceecCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 5888888733 344444443 3445689998776654211 1111111 1 23333333 799999999
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
+.-+.+| ++=.-+..|||++
T Consensus 71 E~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 71 EAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTT----------HHHHHHHTT-CEE
T ss_pred hHHHHHH----------HHHHHHHCCCcEE
Confidence 9999998 6667777888876
No 212
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=36.28 E-value=3e+02 Score=28.58 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH----hhhccEEEEcceeEecC
Q 006164 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSN 536 (658)
Q Consensus 464 SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i----M~~Vd~VivGAdaVlaN 536 (658)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|..+..-.+.-. ...++.|=....|+-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 3345566666654 3344433343343 899999999999999876654333222 23455555555555444
Q ss_pred CCeecccchHHHHH---HHHhCCCCeEeeccccc
Q 006164 537 GTVCSRVGTACVAM---VAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 537 G~VvNKiGT~~lAl---~Ak~~~VPVyV~aetyK 567 (658)
|. -|-..+.- +-+.|+.+.=|++-++|
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 32 12222222 22235666666666654
No 213
>PRK10537 voltage-gated potassium channel; Provisional
Probab=36.18 E-value=6.2e+02 Score=28.49 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=54.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhh-----hccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~Vd~VivG 529 (658)
.+.|+..|++..-..+++..+++|..+ +|+|... ..+....|.++..- |..=-..++ +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~v--vVId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAV--TVIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCE--EEEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 567888999987777777777666544 4444321 13444567765444 333333333 66777664
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCC--CeEeecccc
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI--PVLVCCEAY 566 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~V--PVyV~aety 566 (658)
.+ |..-...+++.||+.+. .+++.+...
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 43 23445678899999874 455555443
No 214
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=36.10 E-value=3.9e+02 Score=29.04 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=54.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHh----------CCCCEEEEc--c-hHHHHHh-
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVR----------KGLSCTYTH--I-NAISYII- 520 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~----------~GI~vTlI~--D-sAv~~iM- 520 (658)
.+++|.|-+.+++.+++.+...|+. +|++.|. .+-|..+. ..+.. .+.++..+. | ..+-.++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~~g~~-~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARLTGRT-KIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCC-eEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 5777788888898888877666653 5555553 23233221 11111 122344443 2 2333333
Q ss_pred hhccEEEEcceeEec-CCCeecccc-hHHHHHHHHhCCCCeEe
Q 006164 521 HEVTRVFLGASSVLS-NGTVCSRVG-TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~~Vd~VivGAdaVla-NG~VvNKiG-T~~lAl~Ak~~~VPVyV 561 (658)
.++.+|++ +.+.. .|.++...+ -..+.-+|++|++.+++
T Consensus 182 ~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 182 DDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24555655 34433 344454555 34567789999988875
No 215
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=36.09 E-value=55 Score=37.19 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=44.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC--CCEEEEcchHHHHHhh--hccEEEEcce
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG--LSCTYTHINAISYIIH--EVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G--I~vTlI~DsAv~~iM~--~Vd~VivGAd 531 (658)
..||..+++....++++.|++.|...-++..+..+...+.+++-+....| -.-.|+....+-.+.+ ++|.|+-|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 37899999988779999999877654444444333334444442211111 0112333334444443 6888888764
Q ss_pred eEecC
Q 006164 532 SVLSN 536 (658)
Q Consensus 532 aVlaN 536 (658)
-+..|
T Consensus 83 ~lse~ 87 (472)
T PRK07178 83 FLSEN 87 (472)
T ss_pred CcccC
Confidence 44444
No 216
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=35.64 E-value=2.6e+02 Score=30.43 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HH-HHHhhhc
Q 006164 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AI-SYIIHEV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av-~~iM~~V 523 (658)
.+++|.|.+.++..+++...+. |..-.|+|. .|.+.+...+ +...|+++..|... ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 6788999988886655555443 223345553 6777665544 33467777766421 11 1112244
Q ss_pred cEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeE
Q 006164 524 TRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
.++++ + +--|..|+ ..++-+|+.|++.++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEE
Confidence 44443 2 34577774 456667888887655
No 217
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=35.45 E-value=2.1e+02 Score=29.19 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC---------CCC-----chH----HHHHHHHHhCC
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK-----HEG----KLLLRRLVRKG 505 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES---------RP~-----~EG----~~La~eL~~~G 505 (658)
++..+.++|. +.+|+..|.+.+=..++..+...|.. +++++|. |-. .-| ..++++|.+.+
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 4555566665 57889999876655566666666764 3333221 111 012 12336666654
Q ss_pred --CCEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 506 --LSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 506 --I~vTlI~D----sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++++.+.. ..+..++..+|.||...|..- .-..+.-.|+.+++|++.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55554432 234556778999988877542 23567788999999998764
No 218
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=35.37 E-value=1.5e+02 Score=29.27 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=45.9
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC--CEEEEcchHHHHHh---hhcc
Q 006164 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYII---HEVT 524 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI--~vTlI~DsAv~~iM---~~Vd 524 (658)
-+..|++||-+|.++-.. .+..|...+..-+|+.+|-.|.. .+++ +.+...|+ +++++...+...+. ...|
T Consensus 37 ~~~~~~~vlDlG~GtG~~-s~~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSV-TVEASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHH-HHHHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 356789999999887431 12223333555689999998863 3445 34555674 57777655543322 2466
Q ss_pred EEEEc
Q 006164 525 RVFLG 529 (658)
Q Consensus 525 ~VivG 529 (658)
.||+|
T Consensus 114 ~V~~~ 118 (198)
T PRK00377 114 RIFIG 118 (198)
T ss_pred EEEEC
Confidence 66664
No 219
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=35.34 E-value=3.5e+02 Score=32.10 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHhccCCCEEEeeCChH--HHHHHHHHHH-H--------------------cCC-eeEEEEeCCCCCchHHHHHHH
Q 006164 445 VKHAVTKIRDGDVLLTYGSSS--AVEMILQHAH-E--------------------LGK-QFRVVIVDSRPKHEGKLLLRR 500 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~Ss--aV~~vL~~A~-e--------------------~gk-~f~ViV~ESRP~~EG~~La~e 500 (658)
.+.++++|.+...|..+|.++ .+-..+..-. . .++ ..-+++..++-..+-.++++.
T Consensus 458 l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~ 537 (638)
T PRK14101 458 VEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDV 537 (638)
T ss_pred HHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 345667777778888887642 2222111110 1 111 233344455555667788899
Q ss_pred HHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 501 LVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 501 L~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
+.+.|+++..|+++ -+.+.+.+|.+|.
T Consensus 538 Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 538 AMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred HHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 99999999999996 5777778998873
No 220
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=35.34 E-value=2.8e+02 Score=32.20 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=66.6
Q ss_pred HHHHHhccCCCEEEeeCC--h---H-HHHHHHHHHHH---cC--CeeEEEEeCC-CC------CchH----------HHH
Q 006164 446 KHAVTKIRDGDVLLTYGS--S---S-AVEMILQHAHE---LG--KQFRVVIVDS-RP------KHEG----------KLL 497 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~--S---s-aV~~vL~~A~e---~g--k~f~ViV~ES-RP------~~EG----------~~L 497 (658)
+.|+.+|++||+|..-+. . . .+..+.+++.+ .| +.++++..-+ .+ ...| ...
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 456778999999988765 2 1 23333333322 12 2455554221 11 1111 122
Q ss_pred HHHHHhCC-CCEEEEcchHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 498 a~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+++.+.| +.++-+.-+.+...+. ++|.+|+=+...-.+|.+.=-........+++.. ..|+|-+
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aA-k~VIvEV 156 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELA-DKVIVEV 156 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhC-CEEEEEE
Confidence 46677777 4555556677777774 5899999999999999875554444333444443 3444433
No 221
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=35.33 E-value=3.4e+02 Score=27.30 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---Cch-----------H----HHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---KHE-----------G----KLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---~~E-----------G----~~La~eL~~~- 504 (658)
++..+.++|. +.+||..|.+.+=..+++.+...|.. ++.++|... .+= | ..++++|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4555566664 57888999886655566666666753 444444321 111 1 1223566554
Q ss_pred -CCCEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 -GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vTlI~D----sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++++.+.. ..+..++.++|.||...|..- --+.+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355554432 234456788998887766531 12356778999999998765
No 222
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=35.33 E-value=1.3e+02 Score=34.19 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=55.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 532 (658)
.+.+||.+|.+...+.+.++.++.|. +.+.+-.|-+.-..+|+++|. ..+++.+-+..++.++|.||.+..+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCC
Confidence 36789999999888777888876553 445555777777888887776 6778878888888899999988543
No 223
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.15 E-value=3.8e+02 Score=30.12 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=52.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
.|++-+-+.++..+|..+...| -+|++.. +.+.|.. +. ..+...|+.++++... .+-..+. +...|++
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-- 154 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-- 154 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE--
Confidence 4444444446666665555444 3555543 4444443 22 4467789999888532 3333333 3444544
Q ss_pred eeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+. ..|.++. -..|+-+|++|+++++|
T Consensus 155 esp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 ESIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2222 2243332 24577789999988776
No 224
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=35.10 E-value=69 Score=36.09 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=44.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhh--hccEEEEcceeE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaV 533 (658)
..||.+|.+--=..+...+.+.+..-.||+ -|.+.|....... ..+++.+....++..+.+ ++|.|++|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 579999988554355566666666668887 5555554321100 112222333345555555 499999998776
Q ss_pred ecCC
Q 006164 534 LSNG 537 (658)
Q Consensus 534 laNG 537 (658)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 5444
No 225
>PRK06348 aspartate aminotransferase; Provisional
Probab=35.09 E-value=2.6e+02 Score=30.34 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=52.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---c-------hHHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~---D-------sAv~~iM~ 521 (658)
+...++++|.|.+.++..++....+.|. +|++. .|.+.+...+.+ ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4456788999998888655555544443 55553 477666554433 3465555543 1 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeE
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
++..|++- ..-|..|. ..++-+|++|++.++
T Consensus 161 ~~~~~v~l~--------~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 161 SKTKAIILN--------SPNNPTGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCccEEEEe--------CCCCCCCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 34444432 23355554 446667888887554
No 226
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.09 E-value=2.3e+02 Score=32.41 Aligned_cols=91 Identities=23% Similarity=0.279 Sum_probs=53.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcce
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 531 (658)
+..|..|+.+|.+..=...++.++..| .+|++.|.++. + ...|.+.|+.+....+ . ...+..+|.||+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 345788999998754224445555555 47888897653 2 3346677885532222 1 22356678776643
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
| + .. ...+-..|+..+|||+-
T Consensus 79 -----G-i-~~--~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----G-F-RP--TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----C-C-CC--CCHHHHHHHHCCCcEee
Confidence 2 1 11 34566677888888883
No 227
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=34.83 E-value=3.9e+02 Score=28.63 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=43.4
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---chHHHHHhhh----ccEEEEcc
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHE----VTRVFLGA 530 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~---DsAv~~iM~~----Vd~VivGA 530 (658)
|++.+.+++...++..+.+.|. .|++ + .|.+.+......+ .|+++..+. ...+-..+.+ -.++|+ .
T Consensus 97 i~~~sG~~a~~~a~~~~~~~gd--~vi~-~-~~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~-~ 169 (385)
T TIGR01825 97 LVFQSGFNTNQGVLSALLRKGD--IVLS-D-ELNHASIIDGLRL--TKATKKIYKHADMDDLDRVLRENPSYGKKLIV-T 169 (385)
T ss_pred EEECcHHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhhccCCCeEEE-E
Confidence 4433335566555555544343 4443 3 3666554333333 566654442 1223333332 133333 1
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+....+.+.. -..++-+|+.|++.+++
T Consensus 170 ~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 170 DGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred ecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 222222222222 24577789999987765
No 228
>PLN02591 tryptophan synthase
Probab=34.65 E-value=4.5e+02 Score=27.81 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=64.7
Q ss_pred CEEEeeCCh---HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chH----HHHHhhhccEEE
Q 006164 456 DVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA----ISYIIHEVTRVF 527 (658)
Q Consensus 456 dvILT~g~S---saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsA----v~~iM~~Vd~Vi 527 (658)
-++|||-|- .-+++|+..|.+.|-. -|++.| -|..|...+...+.+.||....+. .+. +..+....+-.|
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipD-LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPD-LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCC-CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 368888763 4688999999987753 455555 477888899999999999765543 433 344444332222
Q ss_pred EcceeEecCCCeecccc-----hHHHHHHHHhCCCCeEee
Q 006164 528 LGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiG-----T~~lAl~Ak~~~VPVyV~ 562 (658)
-.|..+|-.-.+.+ ...+..+-++.++|++|=
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 23333554444333 233666667779999884
No 229
>PRK05764 aspartate aminotransferase; Provisional
Probab=34.63 E-value=3.1e+02 Score=29.64 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=50.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (658)
+..+.+++|.|.+.++..++..+...|. +|++ ++ |.+.+.. ..+...|+++..+.-. .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3345678888887777665555544343 3444 33 5544432 2234568877766421 2222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
++..|++- ..-|..|.. .++-+|+.|++.++|
T Consensus 163 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN--------SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333321 123555653 466678899987776
No 230
>PRK12414 putative aminotransferase; Provisional
Probab=34.53 E-value=4.2e+02 Score=28.79 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=49.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHhh-hcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVT 524 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd 524 (658)
.++|+|.|-+.++..++......|. +|++. .|.+.+.... +...|..+..+... .+-..+. ++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 164 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPGD--EVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTR 164 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCCC--EEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCcccE
Confidence 3588888888777665555444443 45553 4655443333 33357666555321 1111121 223
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
.|++ + ..-|..|+ ..++-+|++|++++++
T Consensus 165 ~v~i-------~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 165 MIIV-------N-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred EEEE-------c-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 3332 2 34566666 4456678889987665
No 231
>PRK07681 aspartate aminotransferase; Provisional
Probab=34.43 E-value=2.7e+02 Score=30.42 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=52.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-H------HHHHh----hhc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYII----HEV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-A------v~~iM----~~V 523 (658)
.++++|.|.+.++..++....+.| -+|++. .|.+.+.... +...|+++..+... . +..+. +++
T Consensus 94 ~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 167 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEIADKA 167 (399)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc
Confidence 568889888888865554443333 345553 3666554443 34578887776421 1 11121 234
Q ss_pred cEEEEc-ceeEecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 524 TRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 524 d~VivG-AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
..|++- .+. ..|.++++-=-..++-+|+.|++.++
T Consensus 168 k~v~l~~P~N--PTG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 168 KMMILNFPGN--PVPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred eEEEEeCCCC--CcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 444432 011 12444444335567778899998554
No 232
>PRK08064 cystathionine beta-lyase; Provisional
Probab=34.08 E-value=5.7e+02 Score=28.22 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
.|++-+-+.++..+|. +.+.|. +|++. .|.+.| ..+. ..+...|+.++++... .+...+. +...|++ +
T Consensus 72 ~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l-~ 145 (390)
T PRK08064 72 GFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV-E 145 (390)
T ss_pred eEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-E
Confidence 4444323345555553 444444 56664 455544 2333 4567789999988643 2322332 4444444 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.---..|.+.. -..++-+|+.++++|+|=
T Consensus 146 ~p~NptG~~~d---l~~I~~la~~~g~~vvvD 174 (390)
T PRK08064 146 TPSNPLLKVTD---IRGVVKLAKAIGCLTFVD 174 (390)
T ss_pred CCCCCCcEecc---HHHHHHHHHHcCCEEEEE
Confidence 11112343321 235677889999877663
No 233
>PRK08912 hypothetical protein; Provisional
Probab=33.92 E-value=4.5e+02 Score=28.46 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=50.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh-hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~-~Vd~ 525 (658)
++|+|.|.+.++..++....+.| -+|++.+ |.+.+... .+...|+.+..+.. ..+-..+. ++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPG--DEVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 78999999888865555444333 3555544 66655443 34566777665532 11111221 3334
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeE
Q 006164 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVy 560 (658)
|++ + ..-|..|+. .++-+|+.|++.++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEE
Confidence 433 2 335666653 25667888887544
No 234
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.75 E-value=2.9e+02 Score=26.63 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEcc------hHHHHHhh--hccEEEEcceeEecCCCe
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNGTV 539 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vTlI~D------sAv~~iM~--~Vd~VivGAdaVlaNG~V 539 (658)
.+++...+.=..|++|.+++ .++.|.+. ||+|+.+.. ..+..++. ++++||-=.|-. |.-
T Consensus 21 ~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~~~ 89 (142)
T PRK05234 21 AWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---TAQ 89 (142)
T ss_pred HHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---CCC
Confidence 55555554311478887664 45678888 999987631 22333333 789987543211 222
Q ss_pred ecccchHHHHHHHHhCCCCeEeecccc
Q 006164 540 CSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
......+.+=-+|-.|+||++-.-.+-
T Consensus 90 ~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 90 PHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred cccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 213345577778999999998765443
No 235
>PRK07324 transaminase; Validated
Probab=33.72 E-value=2.2e+02 Score=30.92 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=56.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (658)
+....+|+|.|.+.++..++......|. +|++. .|.+.+.. .-+...|..+..+... .+...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3345788898888887665555544343 45553 46654433 2334567777766421 2222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .-=-..|.++++.--..++-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444332 2112335555544456677788999985554
No 236
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=33.68 E-value=4.2e+02 Score=29.04 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=64.7
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC----------Cc------hH----HHHHHHHHh
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLVR 503 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP----------~~------EG----~~La~eL~~ 503 (658)
|+..+.++|. ...||..|.+.+=..++..+...|.. ++.++|..- ++ .| ..+.+.|.+
T Consensus 14 ~G~~~Q~~L~-~~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 14 IGEEGQQKLR-EKHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred cCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 5666777775 46788888875433444555555764 444444321 00 02 112255554
Q ss_pred C--CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 504 K--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 504 ~--GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
. .|.++.+. ...+..++.++|.||.+.|.. ---+.+.-+|..+++|++.++
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 3 35554442 234456678899999887743 234567788999999998654
No 237
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=33.61 E-value=2.5e+02 Score=24.24 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEc---c--hHHHHHhh--hccEEEEcceeEecCCCee
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTH---I--NAISYIIH--EVTRVFLGASSVLSNGTVC 540 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-lI~---D--sAv~~iM~--~Vd~VivGAdaVlaNG~Vv 540 (658)
.+++..++ ..|++|.+++ .++.|.+.||+|. ++. + ..+...++ ++|+||.=.+. .+...
T Consensus 4 ~~~~~l~~--lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~ 70 (90)
T smart00851 4 ELAKRLAE--LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQP 70 (90)
T ss_pred HHHHHHHH--CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Cccee
Confidence 34455554 3588887663 3567888999985 431 1 11333333 79999874321 13333
Q ss_pred cccchHHHHHHHHhCCCCeE
Q 006164 541 SRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVy 560 (658)
.+ -.+.+=-+|-.++||++
T Consensus 71 ~~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 71 HE-DGKALRRAAENIDIPGA 89 (90)
T ss_pred cc-CcHHHHHHHHHcCCCee
Confidence 33 45677778999999975
No 238
>PRK07777 aminotransferase; Validated
Probab=33.60 E-value=4.9e+02 Score=28.19 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=28.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
.+++|.|.+.++..++......| -+|++. .|.+.+...+ +...|..+..+
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~~--~~~~g~~~~~~ 136 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAAV--IAMAGAHRVPV 136 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHCCCEEEEe
Confidence 58899998888866555443323 355553 3666554433 33456655444
No 239
>PRK13566 anthranilate synthase; Provisional
Probab=33.52 E-value=1.4e+02 Score=36.20 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh--hhccEEEE-cceeEecCCCeecccchHHHHHHHHh
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII--HEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYG 554 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM--~~Vd~Viv-GAdaVlaNG~VvNKiGT~~lAl~Ak~ 554 (658)
|+..+|.|+|-...+ -..+++.|.+.|++|+++....-...+ .++|.||| |- .|+ .+..+...+--.|..
T Consensus 524 ~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgG-----pgs-p~d~~~~~lI~~a~~ 596 (720)
T PRK13566 524 GEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPG-----PGR-PSDFDCKATIDAALA 596 (720)
T ss_pred CCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCC-----CCC-hhhCCcHHHHHHHHH
Confidence 456688888877544 346779999999999998755322222 25788776 21 111 222344444445556
Q ss_pred CCCCeEeecc
Q 006164 555 FHIPVLVCCE 564 (658)
Q Consensus 555 ~~VPVyV~ae 564 (658)
.++|++-+|=
T Consensus 597 ~~iPILGICl 606 (720)
T PRK13566 597 RNLPIFGVCL 606 (720)
T ss_pred CCCcEEEEeh
Confidence 7999997764
No 240
>PRK08363 alanine aminotransferase; Validated
Probab=33.16 E-value=2.1e+02 Score=31.14 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=28.6
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
...++++|.|.+.++..++....+.| -+|++. .|.+.+.... +...|..+..+
T Consensus 92 ~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~v~~ 144 (398)
T PRK08363 92 TPDDVRVTAAVTEALQLIFGALLDPG--DEILIP--GPSYPPYTGL--VKFYGGVPVEY 144 (398)
T ss_pred ChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHH--HHHcCCEEEEe
Confidence 34467888888888765555443333 355554 3666554432 22345544443
No 241
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=32.92 E-value=5.5e+02 Score=26.88 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=43.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---HHHHHhhhc----cEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV----TRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~V----d~Viv 528 (658)
+.|++.+.+..+..+|..+...| -.|++. .|.+...... +...|+++..+... .+-..+..- .++|+
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~g--d~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKG--DLILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCC--CEEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 34444333554444454443323 244443 3554433322 33457777666422 233333321 23333
Q ss_pred cceeEecCCCeecccc----hHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiG----T~~lAl~Ak~~~VPVyV 561 (658)
-+.+.|..| -..|+-+|+.|++.+++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 123344444 34566788999977665
No 242
>PRK09982 universal stress protein UspD; Provisional
Probab=32.65 E-value=4e+02 Score=24.60 Aligned_cols=51 Identities=4% Similarity=-0.000 Sum_probs=30.2
Q ss_pred CCEEEEcchHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 506 LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 506 I~vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.+.+..-+-.-.+.. ++|.+++|.+ .+ ++-.-.| .---+.++-++||+|+
T Consensus 82 ~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~---~~-~~~~~~~--va~~V~~~s~~pVLvv 137 (142)
T PRK09982 82 TKLRIERGEMPETLLEIMQKEQCDLLVCGHH---HS-FINRLMP--AYRGMINKMSADLLIV 137 (142)
T ss_pred ceEEEEecCHHHHHHHHHHHcCCCEEEEeCC---hh-HHHHHHH--HHHHHHhcCCCCEEEe
Confidence 4444444444444443 6999999964 22 2222223 3334778889999997
No 243
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=32.60 E-value=4.2e+02 Score=27.65 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCC-EEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 496 LLLRRLVRKGLS-CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 496 ~La~eL~~~GI~-vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+-..+.+.|+. .......-+..+|..+|.+|+- .|+ ...+=|-.+|+|++++.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~-------------~g~-~~l~Ea~~~g~Pvv~~~ 277 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR-------------AGA-STVAELAAAGVPAILIP 277 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCEEEEC-------------CCh-hHHHHHHHcCCCEEEee
Confidence 444445556763 2222232578889999988751 232 23446777899999863
No 244
>PRK06225 aspartate aminotransferase; Provisional
Probab=32.46 E-value=3.2e+02 Score=29.53 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=52.0
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chH-------HHHHhhhcc
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA-------ISYIIHEVT 524 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsA-------v~~iM~~Vd 524 (658)
....+++|.|.+.++..++..+...|. +|++.+ |.+.... ..+...|..+..+. +.. +..+-..++
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445789999988888666655543343 455544 5443222 33456787777664 211 111211111
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEee
Q 006164 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV~ 562 (658)
- ....|+-. ..-|..|+ ..++-+|++|++++++=
T Consensus 156 ~---~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D 196 (380)
T PRK06225 156 E---NTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD 196 (380)
T ss_pred C---CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 0 11122211 12355564 34666789999988763
No 245
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=32.46 E-value=6.1e+02 Score=27.62 Aligned_cols=96 Identities=14% Similarity=0.237 Sum_probs=50.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
.|+|-+-+.++.. +..+...|. +|++.+ |.+.|. .+. ..+...|+.++++... .+-..+. +..+|++-
T Consensus 70 ~~~~~sG~~ai~~-~~~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQL-VMSLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHH-HHHHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 4555555555543 334444443 555543 555543 333 4566789998888533 2322332 34444441
Q ss_pred eeEecCCCeecccch----HHHHHHHHhCCCCeEeecccc
Q 006164 531 SSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 531 daVlaNG~VvNKiGT----~~lAl~Ak~~~VPVyV~aety 566 (658)
..| |..|+ ..++-+|+.|+++++|= ++|
T Consensus 144 ---~P~----NP~~~~~dl~~I~~la~~~g~~lIvD-~t~ 175 (366)
T PRK08247 144 ---TPT----NPLMQETDIAAIAKIAKKHGLLLIVD-NTF 175 (366)
T ss_pred ---CCC----CCCCcHHHHHHHHHHHHHcCCEEEEE-CCC
Confidence 122 44443 44777889999876653 444
No 246
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=32.45 E-value=3.3e+02 Score=28.29 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=53.8
Q ss_pred HHHHhccCCCEEEeeCCh--HHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhc
Q 006164 447 HAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~S--saV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~V 523 (658)
.++.+|+||++|..=|+. ..=+.++....+++ +.+++|-...-....| ...|...|. |
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~----------------V 71 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ----------------V 71 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------E
Confidence 455689999999987764 22234444445555 5578876443221122 234444442 2
Q ss_pred cEEEEcc---------eeEecCCCe---ecccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFLGA---------SSVLSNGTV---CSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VivGA---------daVlaNG~V---vNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+++.|- ...+.+|.+ ...-||..-.+-|-..|+|++..
T Consensus 72 kr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 72 RKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred eEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 2222220 011122222 23678999999999999998864
No 247
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.44 E-value=78 Score=29.32 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=56.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeE-EEEeCCCC-CchHHHHHHHHH--hCCCCEEEEcchHHHHHhhhccEEEEccee
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFR-VVIVDSRP-KHEGKLLLRRLV--RKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~-ViV~ESRP-~~EG~~La~eL~--~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 532 (658)
.|+.+|++--+.+.|.++..+...++ |-+++.++ -..|..+..-+. ..|++++ ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvI----- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVI----- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEE-----
Confidence 57888995444454555555455666 45667776 455655542221 3445444 44456666677654
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
++-+.-+++..+-.|.+|++|+++.+--|
T Consensus 73 -----DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 73 -----DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -----EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -----EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 23367778888888888999999986544
No 248
>PRK06141 ornithine cyclodeaminase; Validated
Probab=32.41 E-value=3.5e+02 Score=29.08 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee-
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS- 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda- 532 (658)
+..+|+.+|.+..-...++.........+|+|.. |-.....+|+.++.+.|+++....+ +...+.++|.|+.-...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~~~--~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVVTD--LEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEeCC--HHHHHhcCCEEEEeeCCC
Confidence 5678999999866544444333322234566654 5445567788888777877665322 33455789988664322
Q ss_pred -------EecCCCeecccchH
Q 006164 533 -------VLSNGTVCSRVGTA 546 (658)
Q Consensus 533 -------VlaNG~VvNKiGT~ 546 (658)
.+..|.+++-+|++
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 23456777777765
No 249
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=32.39 E-value=5.4e+02 Score=27.56 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh---
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH--- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~--- 521 (658)
..+++|.|.+.++..+|....+.| -+|++. ++.+-+.. ..+...|+++.++... .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 356677666666655554443333 245543 23222222 2356678877776311 1222232
Q ss_pred -----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 -----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 -----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++..|++. +.-...|.+ .. -..++-+|+.|+++|+|=
T Consensus 134 ~~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 134 DEFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred hccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEEE
Confidence 34566663 111112322 11 235666788999888764
No 250
>PLN02242 methionine gamma-lyase
Probab=32.31 E-value=3.9e+02 Score=29.99 Aligned_cols=99 Identities=24% Similarity=0.213 Sum_probs=49.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHh-CCCCEEEEcc---hHHHHHhhh-ccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVR-KGLSCTYTHI---NAISYIIHE-VTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~-~GI~vTlI~D---sAv~~iM~~-Vd~Viv 528 (658)
..++|-+-+.++..+|....+.|. +|++.+ |.+.+. .+. ..+.+ .|+.++++.. ..+-..+.. -.++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 345554445566555555544443 555443 555443 333 23334 7888887742 233334432 133333
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-..---..|.++. -..++-+|++|+++++|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 2111112343332 23567788999988776
No 251
>PRK05957 aspartate aminotransferase; Provisional
Probab=32.24 E-value=4e+02 Score=29.05 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh-hccE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 525 (658)
.++++|.|.+.++..++....+.|. +|++. .|.+.+.... +...|+.+.++... .+-..+. ++..
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 4578888887777555554444342 45553 4766555433 34678888777422 1222222 3333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
|++ .| .-|..|+. .++-+|+.|++.+++
T Consensus 164 v~~------~~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVT------IS--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEE------eC--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 332 12 35777753 367789999977764
No 252
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=32.19 E-value=5.7e+02 Score=26.15 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchH------HHHHHHHhCCCCeEeecccc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA------CVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~------~lAl~Ak~~~VPVyV~aety 566 (658)
+|.+..++|.+.||+|...+.-.+...+- +.-.||+-|...=+-+...|-- .+.-+++.++.+.=|++.++
T Consensus 89 ~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~---Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~ 165 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSAAQALL---AAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASI 165 (211)
T ss_pred hHHHHHHHHHHcCCceeeEEecCHHHHHH---HHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEeccc
Confidence 89999999999999987665433333222 1122555544432222223322 23335556777777777666
Q ss_pred c
Q 006164 567 K 567 (658)
Q Consensus 567 K 567 (658)
|
T Consensus 166 r 166 (211)
T cd00956 166 R 166 (211)
T ss_pred C
Confidence 3
No 253
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.17 E-value=1.3e+02 Score=31.49 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHHhCCCCeEeecccc
Q 006164 515 AISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 515 Av~~iM~~Vd~VivGAdaVlaNG~VvNKi-GT~~lAl~Ak~~~VPVyV~aety 566 (658)
.+-..+.++|.||+|-..++.+..-.... --+.+..+|+.+++|+++++.+.
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~gi 109 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGI 109 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 45556779999999998888765322111 11235678899999999987654
No 254
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.07 E-value=5.9e+02 Score=28.12 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CC---------chHHHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~---------~EG~~La~eL~~~- 504 (658)
++..+..++. +..||.+|.+.+=..++..+...|.. +++++|-. -. .--..++++|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4444555664 46788888876544555666666764 33333321 11 0112334566554
Q ss_pred -CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.++.+. ...+..++.++|.||-..|.+.. -+.+.-+|+.++|||+.+.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35544432 23455677889999988876531 2456778999999998764
No 255
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=31.87 E-value=5.9e+02 Score=28.07 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHHHh----ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---
Q 006164 441 DRVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--- 513 (658)
Q Consensus 441 ~~~Ia~~a~~~----I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--- 513 (658)
.+.|+++.... +...++|+|.|.+.++..+++...+.|. .|++.+ |.+.+..-. +...|+.+..+..
T Consensus 80 r~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~~--P~y~~~~~~--~~~~g~~~~~~~~~~~ 153 (409)
T PLN00143 80 RRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLPR--PGFPDVETY--AIFHHLEIRHFDLLPE 153 (409)
T ss_pred HHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEcC--CCCcCHHHH--HHHcCCEEEEEeccCC
Confidence 34455554332 4445788998888888655554444343 444432 655444332 2345666655531
Q ss_pred -------hHHHHHhh-hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 514 -------NAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 514 -------sAv~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.++-..+. +..+++ +.|= -|..|+. .++-+|+.|++.+++
T Consensus 154 ~~~~~d~~~l~~~~~~~~~~~~------~~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 154 KGWEVDLDAVEAIADENTIAMV------IINP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCcCCHHHHHHhcccCCEEEE------EECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 12222222 233332 2232 3677765 455668888876654
No 256
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=31.87 E-value=2.9e+02 Score=28.83 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=61.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|-+.+-.+=+..+.+.|-.++||-.+-.|..+ .|.+.| .++++.-.--...+..++.||...|-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATdD- 95 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATDD- 95 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCCC-
Confidence 4678999999987655556666778888888766554443 244433 25555433323334567777766542
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+.=.-.++-.|++++++|.++..
T Consensus 96 --------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 96 --------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred --------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 22234678899999999998764
No 257
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=31.65 E-value=5.9e+02 Score=30.69 Aligned_cols=99 Identities=8% Similarity=0.067 Sum_probs=68.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHH-----HHHHHHHhCCCCEEEEc---chHHHHHhhhcc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGK-----LLLRRLVRKGLSCTYTH---INAISYIIHEVT 524 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~-----~La~eL~~~GI~vTlI~---DsAv~~iM~~Vd 524 (658)
....|+..|-+.....++..+.+.|- .|+.++.|.-+.+-++ +++++ .+.+|+++.|. +..+-.+++..|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 46789999998877777888888885 6888888877766552 33333 34578888886 456666677889
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
.||.-+|.- +.-....+--.|...|.|++
T Consensus 207 iVi~vsDdy-------~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 207 WVLYVSDNG-------DIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred EEEEECCCC-------ChHHHHHHHHHHHHcCCCeE
Confidence 888776532 22246667777888885554
No 258
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=31.60 E-value=2.6e+02 Score=32.20 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCEEEEcchH--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHh----CCCCeEee
Q 006164 495 KLLLRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVC 562 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsA--------v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~----~~VPVyV~ 562 (658)
.+.+..|.+.||++++|.... +-...++...|| ++.+|....-+|+...+.++.+ ...||.-+
T Consensus 356 l~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri 430 (464)
T PRK11892 356 LKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRV 430 (464)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEe
Confidence 344567777788888875433 334445666664 5677888788999999999887 35788877
Q ss_pred cccc
Q 006164 563 CEAY 566 (658)
Q Consensus 563 aety 566 (658)
+-..
T Consensus 431 ~~~d 434 (464)
T PRK11892 431 TGKD 434 (464)
T ss_pred ccCC
Confidence 6433
No 259
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=31.50 E-value=3.5e+02 Score=29.53 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=50.8
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 521 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+.... ..+...|+.+..+.. ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344677888888887555544433333 45554 36554332 334566887766531 11222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
+..+|++. | .-|..|+. .++-+|+++++.+++
T Consensus 167 ~~~~~v~~~------~--p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVN------N--PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEc------C--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33444431 2 24566654 466677888887654
No 260
>PRK15005 universal stress protein F; Provisional
Probab=31.47 E-value=1.4e+02 Score=27.19 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=21.6
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|.|++|++. +| +.. -+|+- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 57888888763 22 222 23553 333567777888875
No 261
>PRK08960 hypothetical protein; Provisional
Probab=31.36 E-value=2.9e+02 Score=29.94 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=50.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-ch------HHHHHhh---
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-Ds------Av~~iM~--- 521 (658)
+...++++|.|.+.++..++....+.| -+|+|. .|.+.+...... ..|..+..+. |. -+..+.+
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 445678899998888865554443333 355553 465555443333 3455555443 21 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
+..+|+ +.| .-|..|+. .++-+|++|++.+++
T Consensus 164 ~~~~~i~------i~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 164 ADTVGAL------VAS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred ccceEEE------EEC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 222332 222 23666764 466678888876543
No 262
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=31.33 E-value=3e+02 Score=26.77 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCEEEeeCC------h--HHHHHHHHHHHHcCCeeEEEEeCCCCC------------chHHHHHHHHHhCCCCEEEEcc-
Q 006164 455 GDVLLTYGS------S--SAVEMILQHAHELGKQFRVVIVDSRPK------------HEGKLLLRRLVRKGLSCTYTHI- 513 (658)
Q Consensus 455 gdvILT~g~------S--saV~~vL~~A~e~gk~f~ViV~ESRP~------------~EG~~La~eL~~~GI~vTlI~D- 513 (658)
..+++|+|+ + ..+..++..|.+.+..--|+.-+..|. ..-.+=.+.|.+.||+..++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F 84 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPF 84 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-C
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 457888876 2 456677777777777777777787772 2233445778899999877754
Q ss_pred -hHH---------HHHhh---hccEEEEcceeEecCCCeecccchH-HHHHHHHhCCCCeEeec
Q 006164 514 -NAI---------SYIIH---EVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 514 -sAv---------~~iM~---~Vd~VivGAdaVlaNG~VvNKiGT~-~lAl~Ak~~~VPVyV~a 563 (658)
..+ -.++. .+..+++|.|-=+-. ++.|+. .+.-+++.+++.|+++-
T Consensus 85 ~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v~ 144 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVVP 144 (157)
T ss_dssp CCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE-
T ss_pred hHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEEC
Confidence 121 12222 688999999988854 455554 44557777889998873
No 263
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=31.33 E-value=1.2e+02 Score=31.04 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=57.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||.+|.+++-..=++...+.|-...||-.|.-| ++..-..+.+ ++.+-+.--......++.||+-.|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~-----el~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEP-----ELKALIEEGK--IKWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccH-----HHHHHHHhcC--cchhhcccChhhhcCceEEEEeCCCH
Confidence 5778999999987555456666778888888877733 2322222223 22222222222223367777665432
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
-- --.++-+|+.+++||+|+-
T Consensus 84 ~l---------n~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 84 EL---------NERIAKAARERRILVNVVD 104 (210)
T ss_pred HH---------HHHHHHHHHHhCCceeccC
Confidence 22 2458899999999999984
No 264
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=31.32 E-value=1.7e+02 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=17.1
Q ss_pred Ceecccch----HHHHHHHHhCCCCeEeecccc
Q 006164 538 TVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 538 ~VvNKiGT----~~lAl~Ak~~~VPVyV~aety 566 (658)
.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 182 ~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 182 GVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred cCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 34455443 3466678999997764 3444
No 265
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.31 E-value=2.9e+02 Score=30.92 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=42.3
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHH---HHHhhhccEEEEcc
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLGA 530 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv---~~iM~~Vd~VivGA 530 (658)
|+.+|.+.+=....+.+++.| ..|.+.|.++...=..+...|.+.||.+..-.+... .....+.|.||++.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 566665432112344455555 589999988765433444568888988865443321 23456788888854
No 266
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=31.21 E-value=3.1e+02 Score=29.60 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--------------hHH----HHHHHHHhCC
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EGK----LLLRRLVRKG 505 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--------------EG~----~La~eL~~~G 505 (658)
++..+.+++. ...||..|.+.+=..+++.....|.+ ++.++|..+.. -|+ .++.+|.+.+
T Consensus 9 ~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 3445555664 46788888876544566666666765 55555554411 022 2235666654
Q ss_pred --CCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 506 --LSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 506 --I~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++++.+...-....+.+.|.||...|.+.. -..+.-+|+.++|||+.+.
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 666666544333566789988877553211 1234457899999998853
No 267
>PLN02214 cinnamoyl-CoA reductase
Probab=31.11 E-value=3.4e+02 Score=29.12 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=57.7
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhhhccEEE
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~Vd~Vi 527 (658)
.+.+||..|.+.-+.. +++.+.++|. +|+++.-.+..........|...+-.++++ .| ..+..+|..+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 3567888887655433 3344555564 555543222211111122333221134444 22 34566777888888
Q ss_pred EcceeEecCC---CeecccchHHHHHHHHhCCCCeEeec
Q 006164 528 LGASSVLSNG---TVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 528 vGAdaVlaNG---~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
--|-....+- --.|-.||..+.-+|+.+++.-+|.+
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7774332111 01367899999989999998644443
No 268
>PLN00175 aminotransferase family protein; Provisional
Probab=31.10 E-value=6e+02 Score=28.12 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=49.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHh-hhccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vd~ 525 (658)
.+++|.|.+.++..++......| -.|+|.+ |.+.+...+ +...|+.+..+... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57788888777755555443333 3566654 766554433 44578877776421 111111 13333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeE
Q 006164 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVy 560 (658)
|++- ..-|..|+. .++-+|+.|++.++
T Consensus 191 i~i~--------~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 191 ILIN--------TPHNPTGKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred EEec--------CCCCCCCcCCCHHHHHHHHHHHHHcCcEEE
Confidence 3331 233666664 46777888887444
No 269
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=30.83 E-value=5e+02 Score=25.10 Aligned_cols=46 Identities=9% Similarity=-0.088 Sum_probs=33.2
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+.-|.-..+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 108 iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 108 ISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 3334444455677788899999999999887777777788877543
No 270
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=30.80 E-value=6.6e+02 Score=27.01 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=47.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHH--hCCCCEEEEcc--------hHHHHHhh-hc
Q 006164 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLV--RKGLSCTYTHI--------NAISYIIH-EV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~--~~GI~vTlI~D--------sAv~~iM~-~V 523 (658)
.+++|.+.++..+..+..+... ++.-.|++ +.|.+.....+..+. ..|+.+.++.- ..+-..+. ++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~--~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLV--PDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEE--cCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4555654444454444444322 22335555 344444333333332 23466655532 12222222 34
Q ss_pred cEEEEcceeEecCCCeecccch-HHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT-~~lAl~Ak~~~VPVyV 561 (658)
.+|++-. .-..|.+ ..- -.|+-+|++|++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4454433 2234544 243 5577789999998877
No 271
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.77 E-value=1.2e+02 Score=31.21 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=58.9
Q ss_pred EEeeCChHHHHHHHHH-HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE--Ecc-hHHHHHhhhc-cEEEEccee
Q 006164 458 LLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEV-TRVFLGASS 532 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~-A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTl--I~D-sAv~~iM~~V-d~VivGAda 532 (658)
||+.|-+.-|..-|.. +.++ ..+|+.++..+....... .++.... ++| ..+...+..+ |.||--|-.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 7777766555443433 3333 456776665443322111 2222211 123 5566667777 777766655
Q ss_pred EecCCC---------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 533 VLSNGT---------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 533 VlaNG~---------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
....+. -+|-.||..+.-+|+..+++-+|.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 544443 588999999999999988877777544
No 272
>PRK10116 universal stress protein UspC; Provisional
Probab=30.73 E-value=4.1e+02 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.3
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+|+||+|.+.--. ..+.++ ...-+.++.++||+|+
T Consensus 102 ~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 102 HFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 79999999986522 444553 2345788999999997
No 273
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=30.68 E-value=6.3e+02 Score=26.24 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe-eEEE---EeCC----CCCc-----hHH----HHHHHHHhC--
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV---IVDS----RPKH-----EGK----LLLRRLVRK-- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~-f~Vi---V~ES----RP~~-----EG~----~La~eL~~~-- 504 (658)
++..+.++|. +..|+..|.+.+=..+++.+...|.. +.++ ++|- |-.+ -|. .++++|.+.
T Consensus 22 ~g~~~Q~~L~-~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp 100 (245)
T PRK05690 22 FDFDGQEKLK-AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP 100 (245)
T ss_pred cCHHHHHHhc-CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC
Confidence 5666667775 47888888876544556666666754 4443 2221 1100 121 123566654
Q ss_pred CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 505 GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 505 GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.++.+. ...+..+++.+|.||...|... --+.+.-+|+.+++||+..
T Consensus 101 ~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 101 HIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 35554443 2234556788999998887431 2356777899999999874
No 274
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=30.62 E-value=6.4e+02 Score=27.78 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCEEEeeCChHHHHHHHHHH-H-HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCCEEEEcch--------HHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHA-H-ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A-~-e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vTlI~Ds--------Av~~iM~- 521 (658)
.++|+|.|.+..+..+++.. . ..+..-+|++.+ +.+.+.... ..+ ...|+.+.++... .+...+.
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 46777776666665554431 0 112223566544 223222222 223 4568888777421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.+.|++- +.-...|.++. -..|+-+|+.|++.|+|=
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~vivD 209 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLVD 209 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 33444333 22223454443 135677888888777653
No 275
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.42 E-value=2.3e+02 Score=27.21 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEcch--HHHHHhhhccEEEEcc
Q 006164 488 SRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGA 530 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vTlI~Ds--Av~~iM~~Vd~VivGA 530 (658)
.|=..-|+.|+..|.+.|..++.+... .+...++++|.|+...
T Consensus 35 Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 35 GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 444445777777777777777777521 2455678888887653
No 276
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.38 E-value=3.9e+02 Score=24.81 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=23.9
Q ss_pred EEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHh
Q 006164 458 LLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVR 503 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~ 503 (658)
|.||.....++..|....++. ..|+|+|+|.....+-.+.++++..
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~ 50 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED 50 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh
Confidence 445555555656666554432 3366766665444444454444443
No 277
>PRK08361 aspartate aminotransferase; Provisional
Probab=30.34 E-value=4.5e+02 Score=28.54 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=51.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-ch------HHHHHhh---
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-Ds------Av~~iM~--- 521 (658)
+...++++|.|.+.++..++....+.| -+|++.+ |.+.+.. ..+...|+++..+. |. -+..+..
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 444578888888777765555443333 3566544 5554432 33444677776653 21 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 33344332 1111224333322224466678888885553
No 278
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=30.18 E-value=1.7e+02 Score=28.56 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=29.9
Q ss_pred EEeeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 458 LLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
|-||.....+..+|....++. ..++|||+|.....+-..+++++.+....+.++
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i 62 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLI 62 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEE
Confidence 445555555556666655443 246677766665555555555555544445555
No 279
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=30.11 E-value=6.1e+02 Score=25.86 Aligned_cols=138 Identities=13% Similarity=0.121 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006164 381 ISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-----PISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (658)
Q Consensus 381 L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~-----~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dg 455 (658)
+..+++.|.-++| ++.+.|.+|.+.+... ..++...+.-+.|.+.++.++++ +..+...+.... . -..|
T Consensus 18 ~s~AA~~L~isqs---avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~~~~il~~-~~~~~~~~~~~~-~-~~~~ 91 (296)
T PRK11242 18 FTRAAEALHVSQP---TLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYLRYARRALQD-LEAGRRAIHDVA-D-LSRG 91 (296)
T ss_pred HHHHHHHcCCCch---HHHHHHHHHHHHhCCeeEeEcCCceeechhHHHHHHHHHHHHHH-HHHHHHHHHHhc-C-CCee
Confidence 6778888988898 7899999998876542 12233345556666666666554 333333222211 0 1123
Q ss_pred CEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 456 DVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
-+++|. +..+..+|...+++....++.+.+... ..+...|.+.++++-++...- .........++-
T Consensus 92 --~i~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~----~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~ 162 (296)
T PRK11242 92 --SLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIREMSQ----ERIEALLADDELDVGIAFAPV---HSPEIEAQPLFT 162 (296)
T ss_pred --EEEEEeccchhhhhhHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHCCCCcEEEEecCC---CCcceeEEEeee
Confidence 233332 234556777777766666666654433 245567777778877753221 122445555555
Q ss_pred eeE
Q 006164 531 SSV 533 (658)
Q Consensus 531 daV 533 (658)
|.+
T Consensus 163 ~~~ 165 (296)
T PRK11242 163 ETL 165 (296)
T ss_pred ccE
Confidence 544
No 280
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=30.07 E-value=86 Score=34.19 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-hHHHHHhh--hccEEEEcce
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIH--EVTRVFLGAS 531 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-sAv~~iM~--~Vd~VivGAd 531 (658)
..+||..|.+..-..+++.|.+. .++|++++..|..-|..++... +.+-+ .| .++..+.+ ++|.|+.+.+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~-~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDM-LDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCC-CCHHHHHHHHHHhCCCEEEEeeC
Confidence 35899999987665667777654 5688999999987776654221 10001 23 34444555 6888888876
Q ss_pred eE
Q 006164 532 SV 533 (658)
Q Consensus 532 aV 533 (658)
.+
T Consensus 85 ~~ 86 (395)
T PRK09288 85 AI 86 (395)
T ss_pred cC
Confidence 54
No 281
>PRK07340 ornithine cyclodeaminase; Validated
Probab=30.02 E-value=3.9e+02 Score=28.72 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc---
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA--- 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA--- 530 (658)
+..+|+.+|.+..-...++.+......-+|+|. +|-...-.+|+.++.+.|+++. .++ ...++.++|.|+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~-~r~~~~a~~~a~~~~~~~~~~~--~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVR-GRTAASAAAFCAHARALGPTAE--PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEE-cCCHHHHHHHHHHHHhcCCeeE--ECC-HHHHhhcCCEEEEccCCC
Confidence 567899999986554444443321222345555 4433445677888877777766 232 233456888887522
Q ss_pred e----eEecCCCeecccchH
Q 006164 531 S----SVLSNGTVCSRVGTA 546 (658)
Q Consensus 531 d----aVlaNG~VvNKiGT~ 546 (658)
+ ..+.-|..+|-+|++
T Consensus 200 ~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CceeCccCCCCCEEEecCCC
Confidence 1 124667777777765
No 282
>PRK06767 methionine gamma-lyase; Provisional
Probab=29.88 E-value=5.3e+02 Score=28.35 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=47.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEcch---HHHHHh-hhccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYII-HEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vTlI~Ds---Av~~iM-~~Vd~VivG 529 (658)
+.|++-+-+.++..+|....+.| -+|++.+ |.+.+. .+... +...|+++.++... .+-..+ ++..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAG--DHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 44554444445544444443333 3555533 444332 23322 34568887776322 222222 234445442
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. -..++-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112344443 24677788999987776
No 283
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=29.87 E-value=2.2e+02 Score=31.90 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=51.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 521 (658)
+...++++|.|.+.++..++....+.|. +|++. +|.+....... ...|+.+.++.. ..+-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~--~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARA--VFSGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHH--HHcCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 3456789999999888666655543333 45554 46665443332 234666655431 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
+..++ ++.|- -|..|+ ..++-+|++|++++++
T Consensus 189 ~~~~~i------~i~~P--~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAM------VIINP--NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEE------EEeCC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22232 22232 255555 3455668889977665
No 284
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.82 E-value=2.4e+02 Score=30.87 Aligned_cols=60 Identities=18% Similarity=0.110 Sum_probs=41.2
Q ss_pred EEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchH--HHHHHHHHhCCCCEEEEcchHH
Q 006164 457 VLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINAI 516 (658)
Q Consensus 457 vILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG--~~La~eL~~~GI~vTlI~DsAv 516 (658)
.|.||+. ...++..+..|++.|....+.+..+-..... .++++.+.+.|.+|.||+|++-
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 4667764 3456677888888887777777666544333 3446777888999999998753
No 285
>PRK15456 universal stress protein UspG; Provisional
Probab=29.77 E-value=1.4e+02 Score=27.39 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=25.7
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|+|++|++. -..+.. -+|+-.-. +.++.++||+|+
T Consensus 105 ~~DLIVmG~~g-~~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRN-PSISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCC-CCccce--ecCccHHH-HHHcCCCCEEEe
Confidence 79999999986 222222 25765444 477788999986
No 286
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=29.74 E-value=2.4e+02 Score=30.68 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=69.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
+.-+.|=...-+...+.+|.+.|.+.-|+++|.=|.+.=.++.+++.+.| +++|=-|.-+.+.+...++=+=...|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 33344444444445677888889999999999999999999999999998 6777677777777764332221256666
Q ss_pred CCC--eecccchH--HHHHHHHhCCCCeEe
Q 006164 536 NGT--VCSRVGTA--CVAMVAYGFHIPVLV 561 (658)
Q Consensus 536 NG~--VvNKiGT~--~lAl~Ak~~~VPVyV 561 (658)
-|. +++|.||+ .++--=.+.+.=++.
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~ 174 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQST 174 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceEE
Confidence 664 57888764 444444444444443
No 287
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.70 E-value=1.6e+02 Score=27.75 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=44.2
Q ss_pred EEEeCCCCC-----chHHHHHHHHHhCCCCE-EEE-cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 006164 483 VVIVDSRPK-----HEGKLLLRRLVRKGLSC-TYT-HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 483 ViV~ESRP~-----~EG~~La~eL~~~GI~v-TlI-~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~ 555 (658)
+|++-+.|+ .+|.++++.+.+.|.++ ++. .+.+|....+.. ...+. .+-=+.+...++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhc
Confidence 466677787 46778888888888763 332 344555544322 12222 111134566788899
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
+||+|||..+-
T Consensus 72 ~v~l~vC~~~a 82 (128)
T PRK00207 72 GVALNVCVAAA 82 (128)
T ss_pred CCEEEEeHHHH
Confidence 99999997754
No 288
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=29.65 E-value=65 Score=37.10 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhh--hccEEEEcceeE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaV 533 (658)
.||..|.+.-...+...+.+..+..+||++.+.+ +-|... +......-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899998876544444555554467999996633 434332 211111001111111223444443 589999998764
Q ss_pred e
Q 006164 534 L 534 (658)
Q Consensus 534 l 534 (658)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 289
>PRK06207 aspartate aminotransferase; Provisional
Probab=29.63 E-value=6.1e+02 Score=27.94 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------------hHHHHHhh
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------------NAISYIIH 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------------sAv~~iM~ 521 (658)
.++++|.|.+.++..++....+.| -+|+|. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 578999998888866665554434 344443 36665533 233445665544421 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHH-------HHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTAC-------VAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~-------lAl~Ak~~~VPVyV 561 (658)
++.+|++ .|= -|..|+.. ++-+|+.|++.+++
T Consensus 177 ~~~k~v~l------~~P--~NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 177 AGVRVFLF------SNP--NNPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred hcCeEEEE------CCC--CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3444433 221 26666653 66678888876553
No 290
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=29.55 E-value=3.9e+02 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.008 Sum_probs=30.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
.+++|.|.+.++..++....+.|. +|+| + .|.+.+.... +...|..+..+.
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~--~~~~g~~~~~v~ 144 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-L-DPGYPSHAGG--VYLAGGQIYPMP 144 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEEE
Confidence 577889998888655554444443 4444 3 3766655433 334677776664
No 291
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=29.40 E-value=3.2e+02 Score=30.30 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhC----CCCeEeecccccc
Q 006164 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCEAYKF 568 (658)
Q Consensus 516 v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~----~VPVyV~aetyKf 568 (658)
+-..+++.+.||+ +.++....-.|+...+.++.+. .+|+.-+|-...|
T Consensus 278 i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~ 329 (355)
T PTZ00182 278 IVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTP 329 (355)
T ss_pred HHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCcc
Confidence 3444566777754 5677777778888888888875 6788766643334
No 292
>PRK06460 hypothetical protein; Provisional
Probab=29.33 E-value=6.5e+02 Score=27.64 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=29.0
Q ss_pred HHHhCCCCEEEEcch---HHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 500 RLVRKGLSCTYTHIN---AISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 500 eL~~~GI~vTlI~Ds---Av~~iM-~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+...|+.+.++... .+..+. +++..|++ ..---..|.+... -.++-+|+.|+++|+|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 445567776666321 222222 23455655 2111224555543 2466678888876654
No 293
>PRK07589 ornithine cyclodeaminase; Validated
Probab=28.97 E-value=4.7e+02 Score=28.93 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=59.5
Q ss_pred HHHHHhcc--CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhc
Q 006164 446 KHAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (658)
Q Consensus 446 ~~a~~~I~--dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~V 523 (658)
-.+.+++. +-.+++.+|.+..-..-++.+..-..-.+|+|. +|-...-..|+.++.+.|+++....+ +.....++
T Consensus 118 ala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~A 194 (346)
T PRK07589 118 ALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--VAEAVEGA 194 (346)
T ss_pred HHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcC
Confidence 34445553 447888999885443333322222222345554 34333345778888888888887543 45566789
Q ss_pred cEEEEcc---e-------eEecCCCeecccchHH
Q 006164 524 TRVFLGA---S-------SVLSNGTVCSRVGTAC 547 (658)
Q Consensus 524 d~VivGA---d-------aVlaNG~VvNKiGT~~ 547 (658)
|.|+.-. + ..+..|..+|-+|++.
T Consensus 195 DIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 195 DIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 9888744 1 2446788888888765
No 294
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=28.90 E-value=1.6e+02 Score=27.10 Aligned_cols=47 Identities=30% Similarity=0.301 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCe-eEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch
Q 006164 465 SAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (658)
Q Consensus 465 saV~~vL~~A~e~gk~-f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds 514 (658)
.+.+.+++.|.+.|.+ ++|++-. ...|++.+ +.|...|+.+..|.|.
T Consensus 47 ~~a~~~~~~~~~~gi~~v~v~ikG---~g~gr~~~lk~l~~~gl~I~~I~D~ 95 (110)
T PF00411_consen 47 QAAEKIAKKAKELGIKTVRVKIKG---FGPGREAALKALKKSGLKIVSITDV 95 (110)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEES---SSTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcC---CCccHHHHHHHHHhcCCEEEEEEee
Confidence 4567778888877743 4555533 55566665 8999999999999884
No 295
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=28.83 E-value=8.1e+02 Score=26.97 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=65.3
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC--------CCC-----chHH----HHHHHHHhC--
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--------RPK-----HEGK----LLLRRLVRK-- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES--------RP~-----~EG~----~La~eL~~~-- 504 (658)
++..+.+++. +.+||..|.+.+=..++..+...|..--.+|... |-. .-|+ .++++|.+.
T Consensus 18 ~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 18 IGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred cCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 5556666765 4788999887654445566666676422222211 111 1121 223666664
Q ss_pred CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.++.+. ...+..+++.+|.||.+.|.+ .--+.+.-+|+.++|||+.++
T Consensus 97 ~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 35554432 223345678899999988754 233567889999999988653
No 296
>PRK08636 aspartate aminotransferase; Provisional
Probab=28.62 E-value=5e+02 Score=28.46 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=54.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---ch-----------HHHHHhh
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---IN-----------AISYIIH 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~---Ds-----------Av~~iM~ 521 (658)
.+++|.|...++..++....+.|. .|+| + .|.+.+...+.+ ..|+++..+. +. .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 589999999888666554443332 4444 4 377777665533 3677776653 11 1122222
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..+++- .-=-+-|.+++.-=-..++-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 23333331 0012234444444445677789999987764
No 297
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=28.62 E-value=6.4e+02 Score=27.26 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=53.0
Q ss_pred CCEEEeeC-ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chH------HH---HHhh-h
Q 006164 455 GDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------IS---YIIH-E 522 (658)
Q Consensus 455 gdvILT~g-~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsA------v~---~iM~-~ 522 (658)
..+|+|.| -+.+++.++......+++..+++ ++|+ |.+++..+.+.|++++++. +.. .. ..+. +
T Consensus 63 ~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~--~g~~--~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 138 (355)
T cd00611 63 YKVLFLQGGATGQFAAVPLNLLGDKGTADYVV--TGAW--SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPD 138 (355)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEE--CCHH--HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCC
Confidence 46888888 44567766666543344433333 3555 4555555677799988875 311 11 1122 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+ +|.-++.-...|..+. .+++.|++.|+|=|
T Consensus 139 ~~-lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa 170 (355)
T cd00611 139 AA-YVHYCSNETIHGVEFD--------EVPDTGGVPLVADM 170 (355)
T ss_pred CC-EEEEeCCcccccEEcc--------eecccCCCeEEEEc
Confidence 44 3444555555565533 34455888777733
No 298
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=28.54 E-value=6.1e+02 Score=26.81 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=52.2
Q ss_pred CCEEEeeCChHH---HHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chHHHHHhhhccEEEEc
Q 006164 455 GDVLLTYGSSSA---VEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~Ssa---V~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsAv~~iM~~Vd~VivG 529 (658)
.-+|+.+|.+.- +..+|..|.+ -.....+++.-++... ..+...+. .|+.+.++- ...+..+|..+|.+++.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346788887632 2334434432 1222233333233222 34445555 888755443 24678889999999863
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+ |+ ...+=|-.+|+|++++..
T Consensus 260 ~-------------g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A-------------GA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C-------------CH-HHHHHHHHhCCCEEEecC
Confidence 2 21 334466778999998864
No 299
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=28.15 E-value=3.1e+02 Score=28.33 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHHHHHhccCCCEEEeeCC---hHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHh-CCCCEEEEcc
Q 006164 444 IVKHAVTKIRDGDVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHI 513 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~---SsaV~~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~-~GI~vTlI~D 513 (658)
|.+.+.+...+ .+++.++. |+++..++. +.+..+.|+.+|+. ..-|..+++.++.+ .||++.++.-
T Consensus 31 ~i~~a~~~~~~-~i~vs~SGGKDS~vlL~L~~---~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~ 101 (241)
T PRK02090 31 RLAWALENFGG-RLALVSSFGAEDAVLLHLVA---QVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRP 101 (241)
T ss_pred HHHHHHHHcCC-CEEEEecCCHHHHHHHHHHH---hcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 44555555443 46676654 344444333 34567777766654 44468888877654 5999888753
No 300
>PLN02509 cystathionine beta-lyase
Probab=27.96 E-value=5.6e+02 Score=29.47 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=47.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchHHHHHhh----hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivGA 530 (658)
.|++-+...++ ..+..+...|. +|++ +.|.+.|. ++. ..+...|+.+.++.....-.+-. +..+|++ .
T Consensus 151 ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e 224 (464)
T PLN02509 151 AFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E 224 (464)
T ss_pred EEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E
Confidence 34433333444 33444444444 5665 45566554 344 44677899888874332222222 2222322 1
Q ss_pred eeEecCCCeecccchH----HHHHHHHhCCCCeEe
Q 006164 531 SSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
...|..|.. .++-+||+|+++++|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 244555543 366678999998876
No 301
>PRK07671 cystathionine beta-lyase; Provisional
Probab=27.94 E-value=6.5e+02 Score=27.69 Aligned_cols=94 Identities=14% Similarity=0.258 Sum_probs=46.5
Q ss_pred EeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchHHHHHhh----hccEEEEcce
Q 006164 459 LTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGAS 531 (658)
Q Consensus 459 LT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivGAd 531 (658)
+.+++++ ++. .+..+.+.|. +|+|.+ |.+.|. .+. ..+...|+.++++...-...+.. +..+|++- .
T Consensus 69 ~~~~sG~aai~-~~~~~l~~Gd--~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le-~ 142 (377)
T PRK07671 69 FAFGSGMAAIT-AVMMLFSSGD--HVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE-T 142 (377)
T ss_pred EEeCCHHHHHH-HHHHHhCCCC--EEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE-C
Confidence 3345544 443 3333444443 566644 555533 333 45677899988885322222322 34444441 1
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
---..|.+ .---.|+-+|++++++++|
T Consensus 143 P~NPtg~~---~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 143 PTNPLLKI---TDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred CCCCCCcc---cCHHHHHHHHHHcCCEEEE
Confidence 10111222 2233577788999987766
No 302
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=27.74 E-value=6.8e+02 Score=29.61 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHH----HHHcC-CeeEEEEe-CCCCC-------------------chH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH----AHELG-KQFRVVIV-DSRPK-------------------HEG 494 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~----A~e~g-k~f~ViV~-ESRP~-------------------~EG 494 (658)
..+.|+......|++||+|..=|+-.-.-.+|-+ .-.++ +.++++.. -++|. .++
T Consensus 26 ~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~ 105 (543)
T TIGR01110 26 PTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQS 105 (543)
T ss_pred eHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcch
Confidence 3445777888899999999888875443344433 22222 34666654 44552 234
Q ss_pred HHHHHHHHhCCCCEEEEcc----hHHHHHhh--hccEEEEcceeEecCCCeecccch-----HHHHHHHHhCCCCeEeec
Q 006164 495 KLLLRRLVRKGLSCTYTHI----NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGT-----ACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~D----sAv~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT-----~~lAl~Ak~~~VPVyV~a 563 (658)
.+|+ .+.+.| .+.|++. +.++.++. .+|.+|+=+...-.+|.+. .|+ ..++..|+..+--|+|-+
T Consensus 106 ~R~~-~av~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s--lG~s~~~~~aaaeAAk~~agiVIVEV 181 (543)
T TIGR01110 106 LRIA-QLLEDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY--TGPNTEDTPAIVEATAFRDGIVIAQV 181 (543)
T ss_pred HHHH-HHHHcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE--ecCcccchHHHHHhhhhcCCEEEEEE
Confidence 4544 555666 3444443 33444432 5899999999999999994 465 456667776555566655
Q ss_pred cc
Q 006164 564 EA 565 (658)
Q Consensus 564 et 565 (658)
+.
T Consensus 182 Ne 183 (543)
T TIGR01110 182 NE 183 (543)
T ss_pred Cc
Confidence 43
No 303
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=27.74 E-value=3.9e+02 Score=24.79 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=55.0
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------C-Cc----hHH----HHHHHHHhC--CCCEEEEcch---
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------P-KH----EGK----LLLRRLVRK--GLSCTYTHIN--- 514 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P-~~----EG~----~La~eL~~~--GI~vTlI~Ds--- 514 (658)
|+..|.+.+=..+++.+...|.. ++.++|.. - +. -|+ .++++|.+. +++++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 56677665544455555555653 33333322 1 11 132 223455544 3555555432
Q ss_pred -HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 515 -AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 515 -Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.....+.+.|.||.+.|.. --...+.-.|+.+++||+.+.-
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2235567889888887652 2356677889999999998753
No 304
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.73 E-value=40 Score=35.54 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhCCCCEEEEc----chHHHHHhhhccEE-EEcceeEec-CCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTH----INAISYIIHEVTRV-FLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~----DsAv~~iM~~Vd~V-ivGAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
.-|.++...|.+.|++++++. +.....+++-++.+ -.++|.|+. -|+.++.+.= .+|.+.++||+++.-.
T Consensus 33 ~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K----~~A~~~~~p~isVPTa 108 (250)
T PF13685_consen 33 AAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAK----YAAFELGIPFISVPTA 108 (250)
T ss_dssp HHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHH----HHHHHHT--EEEEES-
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHH----HHHHhcCCCEEEeccc
Confidence 357787888888999888653 33334443322222 134444444 3444444433 4577789999998643
Q ss_pred c
Q 006164 566 Y 566 (658)
Q Consensus 566 y 566 (658)
-
T Consensus 109 ~ 109 (250)
T PF13685_consen 109 A 109 (250)
T ss_dssp -
T ss_pred c
Confidence 3
No 305
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=27.62 E-value=1.6e+02 Score=32.82 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=42.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHH--hCCCC-EEEEcchHHHHHh-h-hccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLV--RKGLS-CTYTHINAISYII-H-EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~--~~GI~-vTlI~DsAv~~iM-~-~Vd~Viv 528 (658)
.+||..|.+..-..+++.|.+.| ++|+++.+.+.. .+..++.+.. .-+.. -.|+...++-.+. . ++|.|+-
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 36899999987778899998866 556666444332 3333331110 00000 0222212333332 2 5899888
Q ss_pred cceeEecCC
Q 006164 529 GASSVLSNG 537 (658)
Q Consensus 529 GAdaVlaNG 537 (658)
|.+-...|+
T Consensus 81 ~~~~~~e~~ 89 (451)
T PRK08591 81 GYGFLSENA 89 (451)
T ss_pred CCCccccCH
Confidence 875555553
No 306
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.58 E-value=5.3e+02 Score=25.01 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=57.2
Q ss_pred EEeeC-ChHHHHHHHHHHHHcCCeeEEEEeCCC--CCchHHHHHHHHHhCCCCEEEEc-c----hHHHHHhh-------h
Q 006164 458 LLTYG-SSSAVEMILQHAHELGKQFRVVIVDSR--PKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH-------E 522 (658)
Q Consensus 458 ILT~g-~SsaV~~vL~~A~e~gk~f~ViV~ESR--P~~EG~~La~eL~~~GI~vTlI~-D----sAv~~iM~-------~ 522 (658)
+|..| .+..=..+.+...+++ .-+|+++-.+ +..+..++..+|.+.|..++|+. | ..+..++. .
T Consensus 3 ylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 34444 4433334445555555 4466666555 45567788899999999999984 4 24444443 4
Q ss_pred ccEEEEcceeEecCCCeeccc-------------chHHHHHHHHhCCCCeEeeccc
Q 006164 523 VTRVFLGASSVLSNGTVCSRV-------------GTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKi-------------GT~~lAl~Ak~~~VPVyV~aet 565 (658)
++-||-+|-. +.++.+.++. |+..+.-+...+.+.|+|++-+
T Consensus 82 i~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SS 136 (181)
T PF08659_consen 82 IDGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSS 136 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred cceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECC
Confidence 5677777654 5577666632 4555555555567888777654
No 307
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=27.46 E-value=7.5e+02 Score=26.27 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH---c-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-----HHHHHhh---
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE---L-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----AISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e---~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-----Av~~iM~--- 521 (658)
+...++|.|.+.+...++..+.. . +..-+|++.+. .+-+ +.+.+...|+++..+... .+..+.+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~--~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPES--AHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCc--chHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 34567777755555444433322 1 22246776552 2222 223345568888777521 1222222
Q ss_pred hcc--EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVT--RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd--~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+-+ .|++.. -...|.+. . --.++-+||+++++++|=
T Consensus 152 ~~~~~vv~~~~--~~~tG~~~-~--~~~i~~l~~~~~~~livD 189 (373)
T TIGR03812 152 DNTIGIVGIAG--TTELGQID-D--IEELSKIALENGIYLHVD 189 (373)
T ss_pred hCcEEEEEECC--CCCCCccC-C--HHHHHHHHHHcCCeEEEE
Confidence 212 222221 12344432 2 235777899999988764
No 308
>PRK01362 putative translaldolase; Provisional
Probab=27.29 E-value=2.8e+02 Score=28.61 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeeccc
Q 006164 467 VEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 467 V~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKi 543 (658)
.+.++.+|++ .+.++-|=|.-|. +|.+.+++|.+.||+|..+..-.+...+--+. .||+-|..-=+=++..
T Consensus 63 ~~~m~~~a~~l~~~~~~i~iKIP~T~---~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yispyvgRi~d~ 136 (214)
T PRK01362 63 AEGMIKEGRELAKIAPNVVVKIPMTP---EGLKAVKALSKEGIKTNVTLIFSANQALLAAK---AGATYVSPFVGRLDDI 136 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEeecchHhhc
Confidence 3455565554 3344333333333 89998999999999998776655544443221 2777666532222222
Q ss_pred chHHHHHHH------HhCCCCeEeecccc
Q 006164 544 GTACVAMVA------YGFHIPVLVCCEAY 566 (658)
Q Consensus 544 GT~~lAl~A------k~~~VPVyV~aety 566 (658)
|--.+.++. +.|+.+.-|++-++
T Consensus 137 g~dg~~~i~~~~~~~~~~~~~tkilaAS~ 165 (214)
T PRK01362 137 GTDGMELIEDIREIYDNYGFDTEIIAASV 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEeec
Confidence 433333322 33454555555554
No 309
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=27.20 E-value=2.8e+02 Score=30.26 Aligned_cols=107 Identities=9% Similarity=-0.051 Sum_probs=56.0
Q ss_pred hccCCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----hHHHHHhhhccE
Q 006164 451 KIRDGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTR 525 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~ 525 (658)
+...+.+||..|-+--|..- ++.+.++| ++|++++-++.. .... ...++.. +..| ..+..++.++|.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~----~~~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE----HMSE-DMFCHEF-HLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc----cccc-ccccceE-EECCCCCHHHHHHHHhCCCE
Confidence 44567888988875444332 33344444 567766533210 0000 0011222 2223 234445668898
Q ss_pred EEEcceeEe------cCCC---eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 526 VFLGASSVL------SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 526 VivGAdaVl------aNG~---VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
||--|-.+. .+-. -.|-.||..+.-+|+.+++.-+|.+-+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 876653221 1111 136779999999999999865555443
No 310
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=26.96 E-value=4.7e+02 Score=27.25 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 467 VEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 467 V~~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
.+.++.+|++ -+.++-|=|.=| .+|.+..+.|.+.||+|..+..-.+...+- +.-.||+-|..
T Consensus 66 ~~~mi~eA~~l~~~~~~nv~VKIP~T---~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~---Aa~aGa~yvsP 132 (222)
T PRK12656 66 YEGILKDAHEIRRQCGDDVYIKVPVT---PAGLAAIKTLKAEGYHITATAIYTVFQGLL---AIEAGADYLAP 132 (222)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceEEeeeCCHHHHHH---HHHCCCCEEec
Confidence 3445555543 244444434333 359999999999999987665444433322 11166666555
No 311
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=47 Score=34.63 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=58.5
Q ss_pred HHHhccCCCE---EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhcc
Q 006164 448 AVTKIRDGDV---LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 448 a~~~I~dgdv---ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (658)
..++|+.+|. |--+|+=.-+ ++... .+|.||+.|-.|.+--++ ..+|.....+++++|
T Consensus 106 il~li~~~d~IkmI~~fg~m~p~---v~~l~---ek~~v~~~er~~~~pkr~-------------t~~d~~e~~iLP~~D 166 (250)
T COG2014 106 ILDLIQRDDKIKMIAEFGNMPPV---VRTLK---EKFEVYVFERNPKLPKRG-------------TLSDTLEYQILPEVD 166 (250)
T ss_pred HHHHHcCCCceeEEEecCCCChH---HHHhh---hheEEEEeccCccCcccc-------------cccchhhhhhccccc
Confidence 3456777764 4455552222 33332 579999999888763222 347888889999999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCC-eEeecccccccc
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP-VLVCCEAYKFHE 570 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VP-VyV~aetyKf~~ 570 (658)
.+++.|.+++ ||+ .-. +++.+-.-. |+.+.||--+.+
T Consensus 167 vii~SaStlv-N~T-------~d~-~Ld~ak~ak~vvl~GPTa~l~p 204 (250)
T COG2014 167 VIIASASTLV-NGT-------LDM-ILDRAKKAKLVVLTGPTAQLLP 204 (250)
T ss_pred EEEEechhhh-cCc-------HHH-HHhhhccCcEEEEeCCCcccch
Confidence 9999998876 653 333 234443333 444556655543
No 312
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=26.84 E-value=3.5e+02 Score=26.95 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=39.8
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEE
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Vi 527 (658)
+.+.+-.|.++++.||+.+=.++-+.++.. .-+|+|+|..|.. .+ +-.-.|..+.- +..+++..|.+|
T Consensus 16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~----al-qA~~dGf~v~~-----~~~a~~~adi~v 83 (162)
T PF00670_consen 16 ATNLMLAGKRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIR----AL-QAAMDGFEVMT-----LEEALRDADIFV 83 (162)
T ss_dssp HH-S--TTSEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHH----HH-HHHHTT-EEE------HHHHTTT-SEEE
T ss_pred cCceeeCCCEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHH----HH-HhhhcCcEecC-----HHHHHhhCCEEE
Confidence 345666899999999998766666666544 4699999999943 22 33337887653 334567788776
Q ss_pred E
Q 006164 528 L 528 (658)
Q Consensus 528 v 528 (658)
.
T Consensus 84 t 84 (162)
T PF00670_consen 84 T 84 (162)
T ss_dssp E
T ss_pred E
Confidence 3
No 313
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=26.79 E-value=1e+03 Score=27.29 Aligned_cols=108 Identities=10% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC-CCchHHHHHHHHHh-CCCCEEEEcchHH---H
Q 006164 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHINAI---S 517 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR-P~~EG~~La~eL~~-~GI~vTlI~DsAv---~ 517 (658)
.|.+....++ .|..+..++-+..+..+..-+.+.|....++++-+. +........++|.+ .+.++.++.+.-. .
T Consensus 301 ~~~d~~~~~l-~Gkrvai~~~~~~~~~l~~~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~ 379 (461)
T TIGR02931 301 AIADLTHMFL-ADKRVAIYGNPDLVIGLAEFCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELE 379 (461)
T ss_pred HHHhhhhHHh-CCCeEEEEeCHHHHHHHHHHHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHH
Confidence 3444333333 588899998887665666666677887776665543 33323334455543 2334444443322 3
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 518 ~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..+++. -..+|-++.| ..-..+|+..+||++.+.
T Consensus 380 ~~i~~~---~~~~Dliig~---------s~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 380 SRIKNQ---GLELDLILGH---------SKGRFISIDYNIPMVRVG 413 (461)
T ss_pred HHHHhc---CCCCCEEEEC---------cchHHHHHHcCCCEEEec
Confidence 333321 0112223222 123467889999999773
No 314
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.70 E-value=9.4e+02 Score=26.93 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH---hhhccEEEEcc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI---IHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i---M~~Vd~VivGA 530 (658)
.|..|+.++....+..+.+-+.+.|-....+++.+.-.....++...+...++....+.+.-..-+ |.+. ..
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~-----~p 372 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEE-----PV 372 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhcc-----CC
Confidence 578888888776665666666677776655555444333344443333335666555544333333 3331 23
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
|-|+.|. .-.-+|+..++|++.++
T Consensus 373 dliig~~---------~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 373 DLLIGNS---------HGRYLARDLGIPLVRVG 396 (428)
T ss_pred CEEEECc---------hhHHHHHhcCCCEEEec
Confidence 3333332 23467888999998654
No 315
>PRK15029 arginine decarboxylase; Provisional
Probab=26.68 E-value=2.5e+02 Score=34.40 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=53.5
Q ss_pred EEEEeCCCCCc-------hHHHHHHHHHhCCCCEEEEcch--HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHH
Q 006164 482 RVVIVDSRPKH-------EGKLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (658)
Q Consensus 482 ~ViV~ESRP~~-------EG~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl 550 (658)
+|+++|..+.. -...|...|.+.|..|....+. +...+-. ..|.||+ |..+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57788877753 3455568999999999988754 4444433 4899999 56677776332 12222222
Q ss_pred HHH-hCCCCeEeeccccc
Q 006164 551 VAY-GFHIPVLVCCEAYK 567 (658)
Q Consensus 551 ~Ak-~~~VPVyV~aetyK 567 (658)
+-+ ..++|||+++..-+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 332 35899999987664
No 316
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.64 E-value=1.1e+03 Score=27.94 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=45.8
Q ss_pred HhccCCCEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcc-hHHHHHhh
Q 006164 450 TKIRDGDVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI-NAISYIIH 521 (658)
Q Consensus 450 ~~I~dgdvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vTlI~D-sAv~~iM~ 521 (658)
+++..|.+|+.+|- ++++.++...+.+.+...+|.++.+-++.-|.. -. ..-...|+++....+ ..+..++.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 46677888888864 455555544444443334566666656554432 12 222346777776543 23444443
Q ss_pred ---hccEEEEcceeE
Q 006164 522 ---EVTRVFLGASSV 533 (658)
Q Consensus 522 ---~Vd~VivGAdaV 533 (658)
+.|.|||=.-.+
T Consensus 425 ~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 425 RLRDYKLVLIDTAGM 439 (559)
T ss_pred HhccCCEEEecCCCc
Confidence 567777654333
No 317
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=26.53 E-value=1e+03 Score=27.31 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCE
Q 006164 429 IERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC 508 (658)
Q Consensus 429 Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~v 508 (658)
.+.||++......+.|.++ .+++ .|..|..++.+..+..+.+-+.+.|.....+++......+=.. .+.|... .+
T Consensus 300 ~e~~i~~e~~~~~~~l~~~-~~~l-~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~-l~~~~~~--~~ 374 (475)
T PRK14478 300 TEALIAEEEAKAWAALEPY-RPRL-EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKER-IKELMGP--DA 374 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHh-CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHH-HHHHcCC--Cc
Confidence 3344433333344444443 4444 4677777776654445555566778776666655543322222 3333332 34
Q ss_pred EEEcch---HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 509 TYTHIN---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 509 TlI~Ds---Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.++.|. .+..++. ++|.+|-+ ..-.-+|+..+||++..
T Consensus 375 ~v~~d~~~~e~~~~i~~~~pDliig~----------------s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 375 HMIDDANPRELYKMLKEAKADIMLSG----------------GRSQFIALKAGMPWLDI 417 (475)
T ss_pred EEEeCCCHHHHHHHHhhcCCCEEEec----------------CchhhhhhhcCCCEEEc
Confidence 555553 3333344 34554433 11235688899999844
No 318
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=26.50 E-value=1.8e+02 Score=29.66 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=19.8
Q ss_pred ecccchHHHHHHHHhCCCCeEeeccc
Q 006164 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
.|-.||..++-+|+.+++.|+.+.-.
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 45678999998898888877766543
No 319
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=26.44 E-value=1.8e+02 Score=31.64 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.5
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
+.|.|+.|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 667777665 24456778999999999887654
No 320
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=26.43 E-value=5.1e+02 Score=30.08 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=46.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-------------HHH---HHHHHhCCCCEEEEc---
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-------------KLL---LRRLVRKGLSCTYTH--- 512 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-------------~~L---a~eL~~~GI~vTlI~--- 512 (658)
+..|+.|+.+|-+.+=..+...+.+.|. +|+|+|.++...| ..+ ...+.+.|+.+.+-+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4578999999998653244455555554 6888997765432 111 234667888765422
Q ss_pred -chHHHHHhhhccEEEEcce
Q 006164 513 -INAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 513 -DsAv~~iM~~Vd~VivGAd 531 (658)
|-....+....|.||+.+-
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeC
Confidence 2123334446888887553
No 321
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=26.29 E-value=2.9e+02 Score=29.83 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCCCeEe
Q 006164 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
-.++-+|++|++.+++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3567788889886665
No 322
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.19 E-value=1.8e+02 Score=32.33 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEcchHHHHHhhhccEEEEcceeEecCCCeec
Q 006164 464 SSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 464 SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvN 541 (658)
..+++.++....+ ...+.+|.++-.-+...-.++.+.|.+.||++. .++|.....+.. ... |..++ ++.
T Consensus 138 ~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~-~~~----a~~~~----~~~ 208 (396)
T cd01979 138 DTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDLPV-IGP----GTYVL----GIQ 208 (396)
T ss_pred HHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHhhc-cCc----ceEEE----EeC
Confidence 3455555544322 122344444433333333666688889999986 667765444322 111 00011 223
Q ss_pred ccchHHHHHHHHhCCCCeEee
Q 006164 542 RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 542 KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..+.+..-.+.++|++|++.+
T Consensus 209 ~~~~~~A~~Le~r~giP~~~~ 229 (396)
T cd01979 209 PFLSRTATTLMRRRKCKLLSA 229 (396)
T ss_pred hhHHHHHHHHHHhcCCCcccC
Confidence 344566667889999999875
No 323
>PRK07179 hypothetical protein; Provisional
Probab=26.03 E-value=6.2e+02 Score=27.71 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=49.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhh--ccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE--VTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~--Vd~VivG 529 (658)
..+|+|.|-+.++..+|..+...| -+|++.. +.+- .+...+...|+++..+. | ..+...+.+ ...|++
T Consensus 115 ~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~--s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v- 187 (407)
T PRK07179 115 ESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHM--SLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVV- 187 (407)
T ss_pred CcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCH--HHHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEE-
Confidence 356676666667766665544333 3566532 2221 11223334577665552 2 344445543 223333
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+....+.+..+ ..++-+|+.|++.++|
T Consensus 188 -~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 188 -DSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred -CCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 4454433344443 4677788999986554
No 324
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=26.02 E-value=3.6e+02 Score=29.89 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred CCCEEEeeCCh---HHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEcchHHHHHhhhccEEEE
Q 006164 454 DGDVLLTYGSS---SAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 454 dgdvILT~g~S---saV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
+-.+||+.|-| ..+..++..+..... ++.|+..-.+-..+ ++-..+.+.| +.+....|+ +..+|..+|.|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 56799999987 345566666654333 46666654444322 3335556666 445455566 56667788876
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
+.|.|...++-++ ..++|.+.+=.-+
T Consensus 257 -----------IsRaGa~Ti~E~~-a~g~P~IliP~p~ 282 (357)
T COG0707 257 -----------ISRAGALTIAELL-ALGVPAILVPYPP 282 (357)
T ss_pred -----------EeCCcccHHHHHH-HhCCCEEEeCCCC
Confidence 5788888887654 4799999885444
No 325
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=25.83 E-value=6.7e+02 Score=27.45 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=48.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCE----EEEc-ch-------HHHHH
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSC----TYTH-IN-------AISYI 519 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~v----TlI~-Ds-------Av~~i 519 (658)
..++++|-+.+..+..++....+.+..-.+++++. ..+-....+ ..+...|+.+ .++. +. .+-.+
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~-~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~ 164 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEA-KAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDT 164 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecC-CCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHH
Confidence 34678888777777555554433322112333321 222222222 2345568776 3332 21 23333
Q ss_pred hhhc--cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 520 IHEV--TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M~~V--d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+... +.-+|-...+....++++. -..|+-+||.||++|+|
T Consensus 165 ~~~~~~~t~lv~~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 165 IEKNGDDIAVILLSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHhcCCCeEEEEEeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 3211 1112222233333233333 34477788999988877
No 326
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.76 E-value=8e+02 Score=27.40 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=48.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..++....+.|. +|++ ..|.+.+. .+. ..+...|+.+..+... .+-..+. +...|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 345555555566544444444443 4544 34655543 333 3345668888877422 2333332 33344332
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. -..|+-+|+.|+++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 22122333322 23566678999987776
No 327
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=25.74 E-value=2.9e+02 Score=29.07 Aligned_cols=74 Identities=22% Similarity=0.136 Sum_probs=49.0
Q ss_pred EeeCChHHHHHHHHHHH-HcCCe-eE--EEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEe
Q 006164 459 LTYGSSSAVEMILQHAH-ELGKQ-FR--VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 459 LT~g~SsaV~~vL~~A~-e~gk~-f~--ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVl 534 (658)
+++-|+..+...++++. +.|-+ ++ ||+.-+-|.+|-..=.+.|.+ +|||+|-
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 45566766655555554 34433 33 888888898875543333322 3676663
Q ss_pred cCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.-|...|.+|+++++||.+++-
T Consensus 183 --------Ms~~pEa~~A~~~gi~~~~i~~ 204 (245)
T PRK09136 183 --------MTGMPEAALARELGLPYACLAL 204 (245)
T ss_pred --------CcHHHHHHHHHHcCCCEEEEEE
Confidence 3467889999999999999874
No 328
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=25.72 E-value=1.6e+02 Score=30.69 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHHHHHHHH-HhCC-CCEEEE-cchH
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH-EGKLLLRRL-VRKG-LSCTYT-HINA 515 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~-EG~~La~eL-~~~G-I~vTlI-~DsA 515 (658)
-..|.+.+...+.+-.-+.-.|-+-+| +|..++..|+.|+|+.++|--.+ |-.+|.... .+.| |++.|. +|..
T Consensus 34 P~eIm~~al~tf~~~~q~a~~G~~~lv--lid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~pd~~ 110 (261)
T KOG0189|consen 34 PQEIMDWALETFPNLFQTAASGLEGLV--LIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFPDAV 110 (261)
T ss_pred HHHHHHHHHHHhhhHHHHHhccccchH--HHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcchhH
Confidence 334555666555432223333444444 57888999999999999987665 555665332 3456 887776 5553
No 329
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=25.58 E-value=1.9e+02 Score=23.79 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh
Q 006164 470 ILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 470 vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM 520 (658)
.+.+|.+.+. -.+||+.+..-...-..+...+.+.||++.++++.-+..+-
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 3455656555 45788888833333467788889999999999887765553
No 330
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.58 E-value=1.7e+02 Score=27.55 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=19.1
Q ss_pred ccCCCEEEeeCCh---HHHHHHHHHHHHcCC
Q 006164 452 IRDGDVLLTYGSS---SAVEMILQHAHELGK 479 (658)
Q Consensus 452 I~dgdvILT~g~S---saV~~vL~~A~e~gk 479 (658)
++.||+++.++.| ..+...++.|+++|.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~ 131 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGM 131 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 7899999999654 566678889988664
No 331
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=25.55 E-value=2.4e+02 Score=30.20 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D 513 (658)
-.||.-|+++.++.+|. +++.|. +.+ +.|+-.+|..++. ..+.|||+.++..
T Consensus 87 i~vl~Sg~g~nl~~l~~-~~~~g~l~~~i~~visn~~~~~~~-----A~~~gIp~~~~~~ 140 (280)
T TIGR00655 87 VAILVSKEDHCLGDLLW-RWYSGELDAEIALVISNHEDLRSL-----VERFGIPFHYIPA 140 (280)
T ss_pred EEEEEcCCChhHHHHHH-HHHcCCCCcEEEEEEEcChhHHHH-----HHHhCCCEEEcCC
Confidence 35778889999977655 555564 344 3455566766552 5678999988764
No 332
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.54 E-value=2.1e+02 Score=30.71 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=31.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
-.||..|+++.++.++. +.+.|. ..+|.++= .++...+ + ..+.||+|.++.
T Consensus 92 i~vl~Sg~gsnl~al~~-~~~~~~~~~~i~~visn~~~~~~--l---A~~~gIp~~~~~ 144 (286)
T PRK06027 92 VVILVSKEDHCLGDLLW-RWRSGELPVEIAAVISNHDDLRS--L---VERFGIPFHHVP 144 (286)
T ss_pred EEEEEcCCCCCHHHHHH-HHHcCCCCcEEEEEEEcChhHHH--H---HHHhCCCEEEec
Confidence 45777888899977655 444443 35544433 3443332 2 566799998875
No 333
>PRK09082 methionine aminotransferase; Validated
Probab=25.53 E-value=7.2e+02 Score=26.98 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=48.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHhh-hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd~ 525 (658)
.+++|-|.+.++..++......| -+|++. .|.+-+...+ +...|..+..+... .+-..+. ++.+
T Consensus 93 ~i~~t~G~~~al~~~~~~~~~~g--d~Vli~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 166 (386)
T PRK09082 93 EITVTAGATEALFAAILALVRPG--DEVIVF--DPSYDSYAPA--IELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRL 166 (386)
T ss_pred cEEEeCCHHHHHHHHHHHHcCCC--CEEEEe--CCCchhhHHH--HHHcCCEEEEEecCcccccCCHHHHHHhcCccceE
Confidence 57777877777766555443333 244443 4655554333 33357776666432 1222222 3444
Q ss_pred EEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
|++ + ..-|..|+ ..++-+|++|++.+++
T Consensus 167 v~l-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 167 IIL-------N-TPHNPSGTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred EEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 433 2 23356664 4566788899976554
No 334
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=25.51 E-value=4.4e+02 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=19.8
Q ss_pred HHHHHHHhccCC-CEEEeeCChHHHHHHHH
Q 006164 444 IVKHAVTKIRDG-DVLLTYGSSSAVEMILQ 472 (658)
Q Consensus 444 Ia~~a~~~I~dg-dvILT~g~SsaV~~vL~ 472 (658)
++++.++++..| .+|+|||++-.|...+.
T Consensus 31 ~a~~ia~l~~~g~~vviv~gngpqvG~~~l 60 (310)
T TIGR00746 31 TAPQIAKLIKRGYELVITHGNGPQVGNLLL 60 (310)
T ss_pred HHHHHHHHHHCCCEEEEEECChHHHHHHHh
Confidence 444555566544 89999999988854433
No 335
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=1e+03 Score=26.85 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=55.5
Q ss_pred CCEEEeeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHH-HHHHhC-CCCEEEEcc--h------HHHHHhh
Q 006164 455 GDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLL-RRLVRK-GLSCTYTHI--N------AISYIIH 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~-GI~vTlI~D--s------Av~~iM~ 521 (658)
.++|+|-+-+..+..+.... ++.| -+|++.+-.-. .-.+. .+|.+. |+.+++|.. . ..-..+.
T Consensus 85 ~eIvft~~tT~aln~va~~l~~~~~~g--deIv~s~~EH~--sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~ 160 (405)
T COG0520 85 DEIVFTRGTTEALNLVARGLGRSLKPG--DEIVVSDLEHH--SNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT 160 (405)
T ss_pred CeEEEeCChhHHHHHHHHHhhhhhcCC--CEEEEccCcch--hhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC
Confidence 46888888888875554443 2333 57777665422 22333 455554 999999972 2 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH----HHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
+...|.+. .+-|..|+. .|+-+||.+|+.|+|
T Consensus 161 ~~Tklvais--------~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 161 PKTKLVALS--------HVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred CCceEEEEE--------CccccccccchHHHHHHHHHHcCCEEEE
Confidence 23344333 344555553 588899999988887
No 336
>PRK09191 two-component response regulator; Provisional
Probab=25.26 E-value=6.1e+02 Score=25.28 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcceeEecCCC
Q 006164 466 AVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGT 538 (658)
Q Consensus 466 aV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaVlaNG~ 538 (658)
+|..-+.+|.+ .....+|++++..+... ..+...|...|+.+..+.++ +...+.. ..|.||+..+ +.+|
T Consensus 120 tV~~~l~ra~~~l~~~~~~~~liidd~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~- 195 (261)
T PRK09191 120 EAEALLDDARAEIARQVATRVLIIEDEPIIA-MDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG- 195 (261)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEcCcHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC-
Confidence 44444555543 23345778887665542 23446677788887744333 2333222 4788988764 2221
Q ss_pred eecccchHHHHHHHHhCCCCeEeecc
Q 006164 539 VCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 539 VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.-|.-.+..+.+.+++|++++..
T Consensus 196 ---~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ---SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ---CCHHHHHHHHHHhCCCCEEEEeC
Confidence 11333344444444899999875
No 337
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=25.03 E-value=8.4e+02 Score=25.80 Aligned_cols=38 Identities=18% Similarity=0.047 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
.+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 103 ~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 103 KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 34556779999999999999998888888889998853
No 338
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.94 E-value=5.4e+02 Score=26.08 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds 514 (658)
+.+|++.+.+.....+-..|...|.++.|++.+.-| ..-...|...|..+..+...
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS----PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHCCCEEEEECCC
Confidence 578888877766556566666678888888776553 12235566677777777543
No 339
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.89 E-value=1.8e+02 Score=31.79 Aligned_cols=177 Identities=16% Similarity=0.106 Sum_probs=91.8
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCc-cHHHHHH
Q 006164 345 CGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISL-SESEAKA 423 (658)
Q Consensus 345 ~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~-~~~eaKe 423 (658)
+|....++||+.+++-.---...|. +++.+-...|+.+...+.-+....-+|..++.++++..++.+... -..+..+
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP~--~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~N 147 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMPE--TMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFEN 147 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCC
Confidence 5555667777776654211112343 456676666777666665555534458889999887776654311 1101000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC--CCc---------
Q 006164 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKH--------- 492 (658)
Q Consensus 424 ~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR--P~~--------- 492 (658)
-.--.+ .+ ......|.+.....+ .-.|.-.|-+-++.++-+...++...++++.+|-. |.+
T Consensus 148 paN~~a----H~--~tT~~EI~~~~~g~~--d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i 219 (300)
T COG0031 148 PANPEA----HY--ETTGPEIWQQTDGKV--DAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKI 219 (300)
T ss_pred CccHHH----HH--hhhHHHHHHHhCCCC--CEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCccc
Confidence 000000 00 012222333332221 23455556666777777777777788999999844 222
Q ss_pred hH--HHHH-HHHHhCCCC-EEEEcchHHHHHhh---hccEEEEcce
Q 006164 493 EG--KLLL-RRLVRKGLS-CTYTHINAISYIIH---EVTRVFLGAS 531 (658)
Q Consensus 493 EG--~~La-~eL~~~GI~-vTlI~DsAv~~iM~---~Vd~VivGAd 531 (658)
|| ..+. ..|...=|+ +..|.|..+...++ +-.-+++|..
T Consensus 220 ~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~S 265 (300)
T COG0031 220 EGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGIS 265 (300)
T ss_pred CCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeeccc
Confidence 22 2222 222222232 55667766665555 4577777753
No 340
>PRK09148 aminotransferase; Validated
Probab=24.59 E-value=3.8e+02 Score=29.45 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=53.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHHhh----hcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----EVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~----~Vd 524 (658)
.+++|.|.+.++..++....+.|. +|++ + .|.+.+..... ...|+.+..+... .+-..+. +..
T Consensus 94 ~I~it~G~~~al~~~~~~l~~~gd--~Vl~-~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~ 167 (405)
T PRK09148 94 QVVATLGSKEGFANMAQAITAPGD--VILC-P-NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI 167 (405)
T ss_pred cEEEcCChHHHHHHHHHHhcCCCC--EEEE-c-CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhccccce
Confidence 689999999888665554444443 4444 3 47776654433 3468887766421 1122222 333
Q ss_pred EEEEcc-eeEecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 525 RVFLGA-SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 525 ~VivGA-daVlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
.|++-- + -..|.+++.-=-..++-+|+.|++.++
T Consensus 168 ~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 168 ALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred EEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 343321 1 123555554444566777898987544
No 341
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=24.59 E-value=35 Score=36.01 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=44.6
Q ss_pred HhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-----HHHHHhCCCCEEEEcchHHHHHhhhcc
Q 006164 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-----LRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 450 ~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-----a~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (658)
.++.+|.+||-|++--.|. -+++.+.|- .++-.=..|...|+-+ .+.+.+. +++.+|.|..++.--.-+.
T Consensus 118 ~Lv~eGF~VlPY~~~D~v~--akrL~d~Gc--aavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 118 ILVKEGFVVLPYCTDDPVL--AKRLEDAGC--AAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHHTT-EEEEEE-S-HHH--HHHHHHTT---SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHH
T ss_pred HHHHCCCEEeecCCCCHHH--HHHHHHCCC--CEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHH
Confidence 3667999999999987662 345555453 4455557777766543 3444422 2566677877665444344
Q ss_pred EEEEcceeEecCC
Q 006164 525 RVFLGASSVLSNG 537 (658)
Q Consensus 525 ~VivGAdaVlaNG 537 (658)
+.=+|||+|+-|-
T Consensus 193 AMElG~daVLvNT 205 (247)
T PF05690_consen 193 AMELGADAVLVNT 205 (247)
T ss_dssp HHHTT-SEEEESH
T ss_pred HHHcCCceeehhh
Confidence 4457888888874
No 342
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=24.58 E-value=82 Score=24.44 Aligned_cols=27 Identities=44% Similarity=0.423 Sum_probs=19.3
Q ss_pred chhhccHHHHHHHHHHHHHHHHHHhhc
Q 006164 191 LKEKTSKAERRAIQEAQRAAKAAAKAE 217 (658)
Q Consensus 191 ~~~~~~kAERRa~QEaqRAaKaa~k~~ 217 (658)
.|.+...|-|.+.-|.||||.+++..+
T Consensus 3 eK~kaaEa~k~aEaeKqraAEA~k~aE 29 (42)
T PF07046_consen 3 EKRKAAEATKVAEAEKQRAAEATKAAE 29 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777788888888888776544
No 343
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=24.58 E-value=95 Score=28.19 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=52.7
Q ss_pred EEEeeCCh--HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh--hc
Q 006164 457 VLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~S--saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~--~V 523 (658)
++++.+.. .-+..+++..++ ..|++|.++. .++.|.+.||+|+.+.. ..+--+++ ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 34555432 233345555554 4578886542 46778899999888732 22333333 79
Q ss_pred cEEEE----cceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFL----GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~Viv----GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|.||- |.+....+| |.+=-.|-.++||++-.
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT~ 107 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLITN 107 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCccccc
Confidence 99986 444434444 44455788999999743
No 344
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=24.49 E-value=9.6e+02 Score=26.87 Aligned_cols=112 Identities=16% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC--CCCchHHHHHHHHHhCCCCE
Q 006164 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--RPKHEGKLLLRRLVRKGLSC 508 (658)
Q Consensus 431 ~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES--RP~~EG~~La~eL~~~GI~v 508 (658)
++++++.......+-.|. ++. | .+..+++...+..+.+-+.+.|...-.+++.. +++. ......|...|+.+
T Consensus 260 ~~~~~e~~~~~~~ld~~~--~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~v 333 (416)
T cd01980 260 KVANEEKAAAKGAIRAFS--PIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVEV 333 (416)
T ss_pred HHHHHHHHHHHHHHhhHH--hhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCcc
Confidence 344443444444454442 454 5 56668776555556666667776644444432 2222 23333454455543
Q ss_pred EEEcchH-HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 509 TYTHINA-ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 509 TlI~DsA-v~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+-.|-. ....+. ++|.+| .| .....+|++.+||++-+..
T Consensus 334 ~~~~~~~~~~~~~~~~~pDl~I-------g~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 334 RYRKSLEDDIAAVEEYRPDLAI-------GT---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred ccCCCHHHHHHHHhhcCCCEEE-------eC---------ChhhHHHHHhCCCEEEecC
Confidence 2222211 122222 455543 23 1244679999999987653
No 345
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=24.49 E-value=77 Score=33.87 Aligned_cols=92 Identities=22% Similarity=0.240 Sum_probs=57.0
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-----HHHHHhCCCCEEEEcchHHHHHhhh
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-----LRRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-----a~eL~~~GI~vTlI~DsAv~~iM~~ 522 (658)
+..++.+|.+||-|++--.+. -+++.+.|- .++-.=..|...|+-+ .+.+.+ ..++.+|.|..++.--.-
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~--a~rLed~Gc--~aVMPlgsPIGSg~Gl~n~~~l~~i~e-~~~vpVivdAGIgt~sDa 204 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPML--AKHLEDIGC--ATVMPLGSPIGSGQGLQNLLNLQIIIE-NAKIPVIIDAGIGTPSEA 204 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHH--HHHHHHcCC--eEEeeccCcccCCCCCCCHHHHHHHHH-cCCCcEEEeCCcCCHHHH
Confidence 334667999999999987652 244444453 4555556776655543 333433 456778888766554433
Q ss_pred ccEEEEcceeEecCCCeecccch
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGT 545 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT 545 (658)
+...=+|||+|+-|-.++ |.+-
T Consensus 205 ~~AmElGaDgVL~nSaIa-kA~d 226 (267)
T CHL00162 205 SQAMELGASGVLLNTAVA-QAKN 226 (267)
T ss_pred HHHHHcCCCEEeecceee-cCCC
Confidence 445557888888876555 4443
No 346
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.48 E-value=2.7e+02 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=32.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEE-EEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGK-QFRV-VIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~V-iV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
-.||.-|+++.++.+|. +++.|. +.+| .|+-.+|.. .....+.|||+.++.
T Consensus 96 iavl~Sg~g~nl~al~~-~~~~~~l~~~i~~visn~~~~-----~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 96 VVIMVSKFDHCLNDLLY-RWRMGELDMDIVGIISNHPDL-----QPLAVQHDIPFHHLP 148 (289)
T ss_pred EEEEEeCCCccHHHHHH-HHHCCCCCcEEEEEEECChhH-----HHHHHHcCCCEEEeC
Confidence 45788899999977555 455554 3444 344556533 244556799999874
No 347
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.48 E-value=1.1e+02 Score=27.40 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=51.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|.+.+-..-++.+.+.|-++.||-.+. ... +..+ +++.... ...|..++.||+-.+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~----~~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFS----EGLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHH----HTSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhh----hhHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 47789999998876666777777776666665554 111 1222 2333322 2335566776654422
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..-.-.++..|+.+++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2233568889999999999974
No 348
>PRK14852 hypothetical protein; Provisional
Probab=24.41 E-value=8.4e+02 Score=31.06 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC------C---CCC--ch-
Q 006164 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------S---RPK--HE- 493 (658)
Q Consensus 426 ~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E------S---RP~--~E- 493 (658)
.+..+.|.+++...-...|+..+.++|. +.+|+..|.+-+=..++......|.. ++.++| | |.. .+
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 3455666666432222335555666775 57889999875433445555556754 233222 1 111 11
Q ss_pred --HH----HHHHHHHhC--CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 494 --GK----LLLRRLVRK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 494 --G~----~La~eL~~~--GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|+ .+++.|.+. .++++.+. ...+..++..+|.||-+.|.+.. .+--+... .|..++|||+.
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~------~~rr~l~~-~c~~~~IP~I~ 454 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFAL------DIRRRLFN-RALELGIPVIT 454 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccH------HHHHHHHH-HHHHcCCCEEE
Confidence 21 233566654 46666553 34566677899999988776421 12223333 36899999997
Q ss_pred ecc
Q 006164 562 CCE 564 (658)
Q Consensus 562 ~ae 564 (658)
++.
T Consensus 455 ag~ 457 (989)
T PRK14852 455 AGP 457 (989)
T ss_pred eec
Confidence 654
No 349
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.38 E-value=3.2e+02 Score=27.30 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHHhCCCCeEeeccccccc
Q 006164 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKi-GT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
..+++.|.+.|+.+.++.+. .-+.++|.+|++--... +.....+ +.....--+...++|++-+|--+-+-
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l 84 (200)
T PRK13143 14 RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFLGICLGMQLL 84 (200)
T ss_pred HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 45667788888887777542 23457888777641110 0111111 11122223445689999988766543
No 350
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.30 E-value=5.1e+02 Score=28.77 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhh-ccEEEEccee
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~-Vd~VivGAda 532 (658)
.|.+|+..|.+..=..+.+.+++.| .+|++.|..+... ...+.+|.+.|+.+.+-.+.. .+..+ +|.||..+-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g- 77 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG- 77 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-
Confidence 3567888887753223334444545 5788888665322 234567888898765433322 22333 677766552
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
|-. +..+-..|++.++||+
T Consensus 78 i~~---------~~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 78 IPY---------TNPMVEKALEKGIPII 96 (447)
T ss_pred CCC---------CCHHHHHHHHCCCcEE
Confidence 222 2234555666666665
No 351
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=24.27 E-value=2.1e+02 Score=28.26 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCC-CeecccchHHHHHHHHhCCCCeEeecccccc
Q 006164 496 LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG-TVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG-~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
.+++.|.+.|++++++.+.. -+.+.|.||++--.....- ......|....-.-+...++|++-+|--+-+
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~ 83 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQL 83 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHH
Confidence 45688888888888887532 2457888877541110000 0011224433333344569999987765433
No 352
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=24.11 E-value=2.7e+02 Score=31.43 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred CCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 455 gdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
..+||..|-+--|.. ++..+.+.| .+|++++.........+. .+.. ...++++........+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 367888887654433 334444444 577777643221111111 1211 12355554333333345788877766322
Q ss_pred ecCCC--------eecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
..... -.|-.||..+.-+|+.+++.|+.+.-
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 11111 16788999999999999987665543
No 353
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=24.10 E-value=7.9e+02 Score=26.75 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=52.5
Q ss_pred EEeeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc----ch------HHHHHhh---h
Q 006164 458 LLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----IN------AISYIIH---E 522 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~----Ds------Av~~iM~---~ 522 (658)
|+|.|.+.++..++.... +.|. .|+ +++ |.+.+...+.+ ..|+.+..+. |. .+-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~Vl-v~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--KVW-VSD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--eEE-ECC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 889999988855543322 3343 343 333 77766655433 4677766553 11 2212222 1
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+++++=..-=-+-|.++++-=-..++-+|+.|++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 134444333233344444444456777788999987654
No 354
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=24.09 E-value=3.1e+02 Score=31.46 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=55.3
Q ss_pred HHHHHHHhccCCCEEEeeCC-------hHHHHHHHHH-HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH
Q 006164 444 IVKHAVTKIRDGDVLLTYGS-------SSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~-------SsaV~~vL~~-A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA 515 (658)
.++...+.|..+..|+.|+. |+++ |.. +.+.|..+.+++....=..-| ....+...+.+..+++|+.
T Consensus 25 a~~~i~~ai~~~~~I~I~~d~DaDGitS~ai---l~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD~G 99 (491)
T COG0608 25 AAARIAEAIEKGEKILIYGDYDADGITSAAI---LAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVDNG 99 (491)
T ss_pred HHHHHHHHHHcCCEEEEEEecCcccHHHHHH---HHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCCEEEEECCC
Confidence 44455556778888888864 3333 222 233588999999887666556 3358889999999999987
Q ss_pred HHHHh--hh-----ccEEEEcce
Q 006164 516 ISYII--HE-----VTRVFLGAS 531 (658)
Q Consensus 516 v~~iM--~~-----Vd~VivGAd 531 (658)
.+.+= .. +|.||+==|
T Consensus 100 ~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 100 SGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred cccHHHHHHHHhCCCcEEEECCC
Confidence 76652 22 566665544
No 355
>PRK05942 aspartate aminotransferase; Provisional
Probab=24.05 E-value=4.9e+02 Score=28.38 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=50.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chH------HHHHh----hhcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYII----HEVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsA------v~~iM----~~Vd 524 (658)
.+|+|.|.+.++..++....+.|. +|+|. .|.+.+...+ +...|+.+..+. |.. +..+. +++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 467788888888665554444443 45553 4777664433 234688776663 211 11121 2344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.|++. .-=-..|.++.+-=-..++-+|++|++.+++
T Consensus 173 ~i~l~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 173 ILYFN-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred EEEEc-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 44442 1111224333333334566678899885543
No 356
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=23.90 E-value=6.7e+02 Score=27.03 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=50.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-H------HHHHhhhccEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYIIHEVTRVF 527 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-A------v~~iM~~Vd~Vi 527 (658)
+.+|+|.|.+..+..++....+.| -.|+|.+ |.+.+...+ +...|+++..+... . +..+...++
T Consensus 92 ~~vi~t~G~~~~l~~~~~~~~~~g--d~vlv~~--P~y~~~~~~--~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~--- 162 (383)
T TIGR03540 92 TEVLSLIGSKEGIAHIPLAFVNPG--DIVLVPD--PGYPVYRIG--TLFAGGEPYEMPLKEENGFLPDFDAIPEDIA--- 162 (383)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEeC--CCCcchHHH--HHhcCCEEEEEecCcccCCccCHHHHHhhcc---
Confidence 357788888888866555444433 3455543 666555544 34577777666421 1 112211111
Q ss_pred EcceeEecCCCeecccch-------HHHHHHHHhCCCCeE
Q 006164 528 LGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
-+...|+-+ ..-|..|+ ..++-+|+.|++.++
T Consensus 163 ~~~~~v~i~-~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 163 KKAKLMFIN-YPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccceEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCEEEE
Confidence 122333333 23467774 455667888887544
No 357
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.83 E-value=9e+02 Score=27.45 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=59.7
Q ss_pred ccCCCEEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch----HHHHHhh-hcc
Q 006164 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN----AISYIIH-EVT 524 (658)
Q Consensus 452 I~dgdvILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds----Av~~iM~-~Vd 524 (658)
+..|.--+-++.+ .++-.++....+.| -+|++..+ =|..-.+++ +-|.+.||.|+|+.+. ....+++ +.+
T Consensus 75 LEg~~~~~afsSGmaAI~~~~l~ll~~G--D~vl~~~~-~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk 151 (396)
T COG0626 75 LEGGEDAFAFSSGMAAISTALLALLKAG--DHVLLPDD-LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTK 151 (396)
T ss_pred hhCCCcEEEecCcHHHHHHHHHHhcCCC--CEEEecCC-ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCce
Confidence 3355444444443 34444444444445 46777666 244445666 7778899999988643 3344553 788
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
+|++-. -+| =++.-+=--.++-+||.++
T Consensus 152 ~v~lEt---PsN-P~l~v~DI~~i~~~A~~~g 179 (396)
T COG0626 152 LVFLET---PSN-PLLEVPDIPAIARLAKAYG 179 (396)
T ss_pred EEEEeC---CCC-cccccccHHHHHHHHHhcC
Confidence 888864 123 3455555677889999999
No 358
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=23.81 E-value=6e+02 Score=23.69 Aligned_cols=101 Identities=24% Similarity=0.280 Sum_probs=49.1
Q ss_pred CEEEeeCC---hHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcce
Q 006164 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~---SsaV~~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 531 (658)
|+++-+|- |+++..++.+. .+.++.++.++ .-...+....++++.+.|+++..+....-...-.....+. +.
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~--~~~~v~~v~~~~g~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~-~~- 78 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK--YGLNPLAVTVDNGFNSEEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFK-AK- 78 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH--hCCceEEEEeCCCCCCHHHHHHHHHHHHhCCCeEEEecCHHHHHHHHHHHHh-cc-
Confidence 56666654 45554433322 12243333333 3233455667777766688876554322111111001110 10
Q ss_pred eEecCCC---eecccchHHHHHHHHhCCCCeEeecc
Q 006164 532 SVLSNGT---VCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 532 aVlaNG~---VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+. ..++.-...+.-+|+.+|+++++.+.
T Consensus 79 ----~~~p~~~~~~~~~~~~~~~A~~~g~~~il~G~ 110 (154)
T cd01996 79 ----VGDPCWPCDTAIFTSLYKVALKFGIPLIITGE 110 (154)
T ss_pred ----cCCCChhhhHHHHHHHHHHHHHhCcCEEEeCc
Confidence 111 22344444566689999999998775
No 359
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.80 E-value=1.1e+02 Score=27.39 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=37.2
Q ss_pred HHHHHhCCCCEEEEcchH--HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 498 LRRLVRKGLSCTYTHINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 498 a~eL~~~GI~vTlI~DsA--v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
-+.+.+.|+++++..-+. +.....+.|.||+|.+--+.- ..+--.+..+|+||.++-+
T Consensus 24 ~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 24 NKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVING 83 (95)
T ss_pred HHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeCh
Confidence 345667888877765443 444567889999987654321 1234456678999998743
No 360
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=23.67 E-value=2.5e+02 Score=27.16 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCeeEEEEeCCC
Q 006164 469 MILQHAHELGKQFRVVIVDSR 489 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESR 489 (658)
.++....+....++++..+..
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~n 63 (224)
T cd06442 43 EIVRELAKEYPRVRLIVRPGK 63 (224)
T ss_pred HHHHHHHHhCCceEEEecCCC
Confidence 344444333444445544443
No 361
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=23.55 E-value=9e+02 Score=26.66 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=50.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGA 530 (658)
.|++-+-+.++..++ .+...| -+|++. .|.+.|. .+. ..+...||+++++... .+...+. +..+|++-.
T Consensus 68 al~~~SG~~Al~~~l-~~l~pG--d~Vi~~--~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~les 142 (380)
T PRK06176 68 GFAFASGLAGIHAVF-SLFQSG--DHVLLG--DDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLET 142 (380)
T ss_pred EEEECCHHHHHHHHH-HHcCCC--CEEEEc--CCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEEC
Confidence 444433344565444 444444 356653 3545443 333 4567789998877422 3333343 455565521
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.-..|.+.. --.++-+|++|+++|+|
T Consensus 143 -P~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 143 -PSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred -CCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 1112233322 33678889999998776
No 362
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=23.46 E-value=9e+02 Score=25.60 Aligned_cols=76 Identities=9% Similarity=0.128 Sum_probs=41.3
Q ss_pred cCCCEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCCEEEEcch-HHHHHhh---
Q 006164 453 RDGDVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHIN-AISYIIH--- 521 (658)
Q Consensus 453 ~dgdvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vTlI~Ds-Av~~iM~--- 521 (658)
..+.+|+-.|. ++++..+...+...+...+|.++...++.-|. .|...-...|+++..+.+. .+...+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 34556776654 46665555555443123567777777766544 2223333468888766543 3444444
Q ss_pred hccEEEE
Q 006164 522 EVTRVFL 528 (658)
Q Consensus 522 ~Vd~Viv 528 (658)
..|.||+
T Consensus 272 ~~d~vli 278 (282)
T TIGR03499 272 DKDLILI 278 (282)
T ss_pred CCCEEEE
Confidence 3566665
No 363
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=23.45 E-value=8.4e+02 Score=27.11 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 515 Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+..+|..+|.|| .+.||.+ +=+-.+++|++++=
T Consensus 289 ~~~~~l~~ADlvI-------------~rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 289 AFAEILHWADLGI-------------AMAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred hHHHHHHhCCEEE-------------ECcCHHH--HHHHHhCCCEEEEe
Confidence 4567888888774 3467755 44677899999874
No 364
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=23.32 E-value=7.7e+02 Score=25.43 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 464 SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
+...+.++++|++ ...++.|=|.-|. +|.+.+++|.+.||+|..+..-.+...+--.. .||+-|..
T Consensus 60 ~~~~~~mi~~a~~l~~~~~~i~iKIP~T~---~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (213)
T TIGR00875 60 SLDAEGMVEEAKELAKLAPNIVVKIPMTS---EGLKAVKILKKEGIKTNVTLVFSAAQALLAAK---AGATYVSP 128 (213)
T ss_pred eCCHHHHHHHHHHHHHhCCCeEEEeCCCH---HHHHHHHHHHHCCCceeEEEecCHHHHHHHHH---cCCCEEEe
Confidence 3345566666654 2344333343333 89999999999999998776554444433111 27776655
No 365
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=23.32 E-value=5.7e+02 Score=27.47 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=50.3
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-H---------HHHHhh
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-A---------v~~iM~ 521 (658)
+...++|+|.|.+.++..++. +.. + . +|++ ..|.+.... ..+...|+++..+... . ...+..
T Consensus 69 ~~~~~i~it~Ga~~~l~~~~~-~~~-~-~-~v~i--~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (354)
T PRK06358 69 LDLENVILGNGATELIFNIVK-VTK-P-K-KVLI--LAPTFAEYE--RALKAFDAEIEYAELTEETNFAANEIVLEEIKE 140 (354)
T ss_pred CChhhEEECCCHHHHHHHHHH-HhC-C-C-cEEE--ecCChHHHH--HHHHHcCCeeEEEeCccccCCCccHHHHHhhcc
Confidence 455678889888888755444 442 2 2 4554 344443333 3345678777766421 1 111222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++.|++- .-=-.-|.++++-=-..++-+|+.|++.+++
T Consensus 141 ~~~~v~~~-~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 141 EIDLVFLC-NPNNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCEEEEe-CCCCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 34444431 1111223333322234456678888886664
No 366
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=23.30 E-value=2.1e+02 Score=31.04 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhh--hccEEEEcceeEe
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVL 534 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaVl 534 (658)
.||..|.+..-..+++.|.+. .++|++++..|..-+..++. .-+..-+....++..+.+ ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad----~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAH----RSYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCc----eEEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 378888887665777777765 56899999988876665442 111111111123444444 5898888876654
No 367
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=23.28 E-value=7.4e+02 Score=27.19 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=49.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHH-HHhCCCCEEEEcch-HHHHHhh-hccEEEEcce
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHIN-AISYIIH-EVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~e-L~~~GI~vTlI~Ds-Av~~iM~-~Vd~VivGAd 531 (658)
.+|+|-|...++..++ .+.+.|. +|++. ++.+.|... ... +...++.+++..|- .+...+. +..+|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 4455555555665555 4544443 56664 455544432 222 23336777766542 3333342 344443321
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-.-..|.++ --..++-+|+.++++|+|=
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvvD 172 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIVD 172 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEEE
Confidence 111123222 3445677889999998873
No 368
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.23 E-value=4e+02 Score=26.40 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhhh------
Q 006164 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE------ 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~------ 522 (658)
|.+||+.|-+.-+.. +.+.+.+.| .+|+++-.|.......+..++...|-.+.++ .| ..+..++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457788877665533 334444444 4666665666555667777777766555444 33 233344443
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHHh
Q 006164 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYG 554 (658)
Q Consensus 523 -Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~ 554 (658)
+|.||-.|-. ...+.. .|..|++.++-.+..
T Consensus 82 ~id~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666655421 111111 566777777766554
No 369
>PLN00203 glutamyl-tRNA reductase
Probab=23.00 E-value=4.6e+02 Score=30.71 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=45.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+..|+.+|.+..-..+++.+...|. -+|+|+. |-......|+.++. |+.+.++........+.++|.||...
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEcc
Confidence 6789999999876666777766552 2466653 33333344444442 55566665445566778899988753
No 370
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.00 E-value=3.1e+02 Score=28.15 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=12.7
Q ss_pred HHHHHHHHh-CCCCeEee
Q 006164 546 ACVAMVAYG-FHIPVLVC 562 (658)
Q Consensus 546 ~~lAl~Ak~-~~VPVyV~ 562 (658)
..+|++|++ +|+|-+++
T Consensus 81 ~i~~~la~~~~gv~~via 98 (225)
T COG0569 81 SVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHhcCCCcEEE
Confidence 557777765 89998776
No 371
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=22.93 E-value=1.1e+03 Score=26.57 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCCEEEeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh---
Q 006164 454 DGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--- 521 (658)
+++++|..|.++ ++|..+....+.| -+|+|+..--+ |.+++.-+...|.++..+.- ..+...+.
T Consensus 55 ~~~~~ll~gsGt~amEAav~sl~~pg--dkVLv~~nG~F--G~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~ 130 (383)
T COG0075 55 NGDVVLLSGSGTLAMEAAVASLVEPG--DKVLVVVNGKF--GERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP 130 (383)
T ss_pred CCcEEEEcCCcHHHHHHHHHhccCCC--CeEEEEeCChH--HHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC
Confidence 457878777776 5778787776544 36676666544 78888888889998887743 35555555
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+++.|.+ .|+=.+- +++|.+.. +|-+||.|+.=++|=|
T Consensus 131 ~~~~V~~-vH~ETST-Gvlnpl~~--I~~~~k~~g~l~iVDa 168 (383)
T COG0075 131 DIKAVAV-VHNETST-GVLNPLKE--IAKAAKEHGALLIVDA 168 (383)
T ss_pred CccEEEE-EeccCcc-cccCcHHH--HHHHHHHcCCEEEEEe
Confidence 3444432 3333344 47887655 8889999988887743
No 372
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.91 E-value=5e+02 Score=25.95 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhhh-----
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE----- 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~----- 522 (658)
.|.+||..|-+.-+.. +.+.+.++| .+|+++..++ .+...+...+.+.|..+.++ +| ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDP-AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCH-HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3668888887665533 334455555 4777765443 34455556676667666544 22 344444443
Q ss_pred --ccEEEEcceeEecCCCe-------------ecccchHHHHHHHHhC----CCCeEeeccc
Q 006164 523 --VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF----HIPVLVCCEA 565 (658)
Q Consensus 523 --Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~----~VPVyV~aet 565 (658)
+|.||..|-.. ..+.. +|-.|++.+.-++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQ-FRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 56666655221 11111 4556777776655532 4455555433
No 373
>PRK12354 carbamate kinase; Reviewed
Probab=22.90 E-value=2.2e+02 Score=31.18 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHH
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRR 500 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~e 500 (658)
++++.++++....+|+||||+.-|..++..+.+.. ..+.+.+.+|- ..-|.-+...
T Consensus 31 ~a~~ia~~~~~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq-g~iGy~l~q~ 90 (307)
T PRK12354 31 AAEQIAKIAREHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE-GMIGYMLEQE 90 (307)
T ss_pred HHHHHHHHhCCCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc-chHHHHHHHH
Confidence 34444456665589999999999965555444322 22444444443 2335555443
No 374
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=22.83 E-value=2e+02 Score=32.00 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=37.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhh--hccEEEEcceeE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~--~Vd~VivGAdaV 533 (658)
.||.+|.+..-..+...+++.+....||+ -|.+.|..+.-+ .+...+.....+-.+.+ ++|.|+.|.+..
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~~----~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 73 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYV---APGNAGTALLAE----NVVIDVTDIEALVAFAKEEGIDLTVVGPEAP 73 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhcc----ccCCCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68999988654455556666543346666 456666544311 12211122123333333 478888877643
No 375
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=22.83 E-value=1.7e+02 Score=31.98 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=36.1
Q ss_pred HHHHHHhccC-CCEEEeeCChHHHHHHHHHHHHc----C----CeeEEEEeCCCCCchHH----HHHHHHHhCCCC
Q 006164 445 VKHAVTKIRD-GDVLLTYGSSSAVEMILQHAHEL----G----KQFRVVIVDSRPKHEGK----LLLRRLVRKGLS 507 (658)
Q Consensus 445 a~~a~~~I~d-gdvILT~g~SsaV~~vL~~A~e~----g----k~f~ViV~ESRP~~EG~----~La~eL~~~GI~ 507 (658)
+++.+.++.+ .++|+||||+.-|..+++. ++. . ..+.+.+.+|-=+- |. .|.++|...|++
T Consensus 32 a~~i~~l~~~g~e~VitHGNGPQVG~l~lq-~~aa~~~~~~p~~PLd~~~AmsQG~I-Gy~l~qal~n~l~~~~~~ 105 (312)
T COG0549 32 AEQIADLIASGYEVVITHGNGPQVGLLLLQ-NEAADSEKGVPAYPLDVLVAMSQGMI-GYMLQQALRNELPRRGLE 105 (312)
T ss_pred HHHHHHHHhcCCeEEEEcCCCchHHHHHHH-hhhhccccCCCCccHHHHhHhhhhHH-HHHHHHHHHHHHhhcCCC
Confidence 3455567777 5899999999999554443 221 1 23445555543221 33 444677788875
No 376
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.82 E-value=2.6e+02 Score=29.23 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhCCCCEEEEcch-HHHHHh--hhccEEEEcce
Q 006164 493 EGKLLLRRLVRKGLSCTYTHIN-AISYII--HEVTRVFLGAS 531 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~Ds-Av~~iM--~~Vd~VivGAd 531 (658)
.|..+.+.|.+.|++|.+|..+ -....+ .++|.||...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 4667778888888888777432 222222 25788877643
No 377
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.81 E-value=7.5e+02 Score=24.44 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
.+.++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 4456777778888888887766666666777664
No 378
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=22.79 E-value=1e+03 Score=26.10 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+..+..+.+.+ ..+|..+|.+|+=+ ||..+ =|-.+++|++++.
T Consensus 251 ~~~v~~~~~~~-~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~y 293 (385)
T TIGR00215 251 DLQLHLIDGDA-RKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVGY 293 (385)
T ss_pred CCcEEEECchH-HHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEEE
Confidence 45666665544 46888999887655 66554 5667899999983
No 379
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=22.75 E-value=1e+03 Score=26.01 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=29.2
Q ss_pred HHHhCCCCEEEEcch---HHHHHhhh----ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 500 RLVRKGLSCTYTHIN---AISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 500 eL~~~GI~vTlI~Ds---Av~~iM~~----Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
.+...|.++.++..+ .+...+.. -.++|+-..---..|.++. --.+.-+|+.|++.++ +=|.|-
T Consensus 148 ~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~li-vDea~~ 218 (410)
T PRK13392 148 GIRRSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTY-VDEVHA 218 (410)
T ss_pred HHHHcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEE-EECCcc
Confidence 444568887776533 22233321 1223322211112344433 2346667888887544 334443
No 380
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.70 E-value=4.8e+02 Score=25.74 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.|..||..|.+..+.. +.+.+.+.|. +|+++..+. ..+...|+++|.||...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 5778888888876544 3344444443 566665431 23455788899998765
No 381
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.66 E-value=1.8e+02 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCCCEEEEcchH-HHHH---hhhccEEEEcceeEe
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINA-ISYI---IHEVTRVFLGASSVL 534 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsA-v~~i---M~~Vd~VivGAdaVl 534 (658)
.|+.+++.|.+.|+++.+|...- .... +.+.|.||.-+|..+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 35555566666666665553221 1111 235688887776543
No 382
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=22.62 E-value=1.7e+02 Score=28.67 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH
Q 006164 439 LADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL 497 (658)
Q Consensus 439 ~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L 497 (658)
...+.+.+...++-.+|..|.-||-|.--..+|.. ..-+.++-.||+|..|..+|+-+
T Consensus 52 ~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~-~g~~~~~I~~vvD~np~K~G~~~ 109 (160)
T PF08484_consen 52 QSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNY-FGLDNDLIDYVVDDNPLKQGKYL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHH-HT--TTTS--EEES-GGGTTEE-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHH-hCCCcceeEEEEeCChhhcCccc
Confidence 34444555555566789999999987543233433 33334456677788899998654
No 383
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=22.47 E-value=8.3e+02 Score=24.83 Aligned_cols=110 Identities=11% Similarity=0.049 Sum_probs=60.0
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CC----chHH----HHHHHHHhC--
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK----HEGK----LLLRRLVRK-- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~----~EG~----~La~eL~~~-- 504 (658)
++..+.++|. ...|+..|.+.+=..++..+...|.. +++++|-. .. .-|+ .++++|.+.
T Consensus 18 ~g~~~q~~L~-~~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp 95 (212)
T PRK08644 18 HTPKLLEKLK-KAKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP 95 (212)
T ss_pred cCHHHHHHHh-CCCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC
Confidence 6667777776 45778888765433445555555664 33333322 10 0121 223566653
Q ss_pred CCCEEEE----cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhC-CCCeEeecc
Q 006164 505 GLSCTYT----HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVCCE 564 (658)
Q Consensus 505 GI~vTlI----~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~-~VPVyV~ae 564 (658)
.+.++.+ .+..+..+++.+|.||-..|... -.+.+.-.|..+ ++|++.++.
T Consensus 96 ~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~---------~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 96 FVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAE---------TKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHHHHhCCCCEEEeeh
Confidence 4555444 33334456778898877765442 123333445555 999998753
No 384
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.39 E-value=4.2e+02 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=23.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHH
Q 006164 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRL 501 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL 501 (658)
+|.||.....+..+|....++. ..++|||+|.....+-...++++
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~ 47 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSL 47 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHh
Confidence 4556666666666666655432 24566666655444433444333
No 385
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.36 E-value=9.4e+02 Score=25.43 Aligned_cols=101 Identities=25% Similarity=0.255 Sum_probs=61.8
Q ss_pred CEEEeeCC---hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-EcchH----HHHHhhh-ccEE
Q 006164 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINA----ISYIIHE-VTRV 526 (658)
Q Consensus 456 dvILT~g~---SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTl-I~DsA----v~~iM~~-Vd~V 526 (658)
-++|||.| ..-+++++..+.+.|-. =|+|.| -|..|...+...+.+.|+.... ++-+. +..+.+. -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipD-Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPD-LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECC-CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 47888876 34678899999987753 345544 4667888999999999998666 54444 2222222 2333
Q ss_pred EEcceeEecCCC-----eecccchHHHHHHHHhCCCCeEee
Q 006164 527 FLGASSVLSNGT-----VCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 527 ivGAdaVlaNG~-----VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-+ |..+|. -...-....+..+.++.++|++|=
T Consensus 170 Y~----vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YY----VSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EE----EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22 111221 122223346667777779999874
No 386
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.29 E-value=64 Score=34.10 Aligned_cols=85 Identities=21% Similarity=0.219 Sum_probs=55.0
Q ss_pred HhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH----HHHHhCCCCEEEEcchHHHHHhhhccE
Q 006164 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL----RRLVRKGLSCTYTHINAISYIIHEVTR 525 (658)
Q Consensus 450 ~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La----~eL~~~GI~vTlI~DsAv~~iM~~Vd~ 525 (658)
.++++|.+||-|++--.|. -++..+-| ..++..=..|...|.-+. -++.-..++|-+|.|..++.--.-+..
T Consensus 125 ~Lv~eGF~VlPY~~dD~v~--arrLee~G--caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~a 200 (262)
T COG2022 125 QLVKEGFVVLPYTTDDPVL--ARRLEEAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQA 200 (262)
T ss_pred HHHhCCCEEeeccCCCHHH--HHHHHhcC--ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHH
Confidence 3667999999999987652 23333334 356666677877665442 122334557788888777665555555
Q ss_pred EEEcceeEecCCC
Q 006164 526 VFLGASSVLSNGT 538 (658)
Q Consensus 526 VivGAdaVlaNG~ 538 (658)
.=+|||+|+-|-.
T Consensus 201 MElG~DaVL~NTA 213 (262)
T COG2022 201 MELGADAVLLNTA 213 (262)
T ss_pred HhcccceeehhhH
Confidence 5689999998843
No 387
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.25 E-value=5.5e+02 Score=22.70 Aligned_cols=39 Identities=15% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 491 ~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
..+-.++++.+.+.|+++..|+++.-..+-+-+|.+|.-
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~ 111 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLV 111 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEc
Confidence 344566778899999999999988766665667777754
No 388
>PRK07682 hypothetical protein; Validated
Probab=22.21 E-value=7.8e+02 Score=26.47 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=28.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
.++++|.|.+.++..++....+.|. +|++. .|.+.+...+ +...|..+..+
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~~~--~~~~g~~~~~~ 132 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPGD--EVLIV--EPSFVSYAPL--VTLAGGVPVPV 132 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCCC--EEEEe--CCCchhhHHH--HHHcCCEEEEe
Confidence 4688998888888666555543332 44443 4555443333 23346665554
No 389
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=22.13 E-value=3.7e+02 Score=29.49 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=54.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC-----------CEEEEcchHH-HHH
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-----------SCTYTHINAI-SYI 519 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI-----------~vTlI~DsAv-~~i 519 (658)
+...++++|.|.+.++.. |..+...|. .|+| ..|.+.+...+. ...|+ .++.+....- .+.
T Consensus 93 ~~~d~I~it~Ga~~al~~-l~~l~~~gd--~Vlv--~~P~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 165 (402)
T TIGR03542 93 IDPEEIFISDGAKCDVFR-LQSLFGSDN--TVAV--QDPVYPAYVDSN--VMAGRAGVLDDDGRYSKITYLPCTKENNFI 165 (402)
T ss_pred CCHHHEEECCCcHHHHHH-HHHhcCCCC--EEEE--eCCCCcchHHHH--HHcCCccccccccccceEEEeecchhhCCC
Confidence 555678899998888854 455554443 3444 456665554433 33455 7766653211 111
Q ss_pred h-----hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 520 I-----HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M-----~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. .++++|+|- .-=-+-|.++++-=-..++-+|++|++.+++
T Consensus 166 ~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 166 PDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 1 234455442 1111224444444345677788889886543
No 390
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.10 E-value=1.1e+03 Score=26.26 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCEE-EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-+.|.+.||++. +++|..+.. ++.. -|+-.+. ++.+.+.+..-.+-+.||+|++.+.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e-~~~~----~~~~~~~----~~~~~~~~~A~~Le~~~GiP~~~~~ 228 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTE-LPVI----GPGTVVA----PLQPYLSDTATTLRRERGAKVLSAP 228 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcch-hhhc----CCCeEEE----EechHHHHHHHHHHHHhCCccccCC
Confidence 566678888999998 778865432 1111 1222221 4556666666667788999988763
No 391
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.09 E-value=6.3e+02 Score=24.24 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=21.6
Q ss_pred EEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHH
Q 006164 458 LLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLL 497 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~L 497 (658)
|.||.....+..+|....++- ..++|+|++..+..+-..+
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~ 45 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAI 45 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHH
Confidence 444555555555555554432 4567777776654443333
No 392
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=22.07 E-value=1.2e+03 Score=26.74 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=64.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-c--CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhh-------hcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE-L--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-------EVT 524 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~-------~Vd 524 (658)
.|+|+|-+-.....-+|+.-.. . +.+-+|+-+.+.-..-+.- .+.|.+.|+.+||++-.--+.+.- +-+
T Consensus 103 ~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s-~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~ 181 (428)
T KOG1549|consen 103 SDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDS-CRALQEEGLEVTYLPVEDSGLVDISKLREAIRSK 181 (428)
T ss_pred CcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHH-HHHHHhcCeEEEEeccCccccccHHHHHHhcCCC
Confidence 4678887776666555555332 1 2233677666665443221 468899999999997652222211 346
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.+++.+.|..-=++++.+ --|..+|++.+|.|+|
T Consensus 182 T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 182 TRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred ceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 7777877776554444444 3477899999996665
No 393
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=22.00 E-value=8.1e+02 Score=24.54 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=62.7
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC----------------chHH----HHHHHHHh
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----------------HEGK----LLLRRLVR 503 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~----------------~EG~----~La~eL~~ 503 (658)
++..+.++|.+ ..|+..|.+..-..+++.+...|-. +++++|..-. .-|+ .++..|.+
T Consensus 9 ~G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg-~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~ 86 (198)
T cd01485 9 WGDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86 (198)
T ss_pred cCHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH
Confidence 44555666654 7788889887655666666666765 3333332211 0121 12355655
Q ss_pred CC--CCEEEEcc------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 504 KG--LSCTYTHI------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 504 ~G--I~vTlI~D------sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+ +.++.+.. .-...+++..|.||...|. ..--..+.-+|+++++||+.+.
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEEE
Confidence 44 55555432 2244556788888755442 2223456678999999999874
No 394
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.85 E-value=5.1e+02 Score=29.17 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCEE-EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vT-lI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++.+.|...||++. +++++...-+ +.... |+-. -+++..+++..-.+ +.|++|++.+.
T Consensus 181 ~el~~lL~~~Gi~v~~~lp~~~~~d~-~~~~~---~~~~-----~~~~~~~~~~A~~L-~~~GiP~~~~~ 240 (427)
T PRK02842 181 DQLTLEFKKLGIGVVGFLPARRFTEL-PAIGP---GTVV-----ALAQPFLSDTARAL-RERGAKVLTAP 240 (427)
T ss_pred HHHHHHHHHcCCeeEEEeCCccHHHH-hhcCc---CcEE-----EEeCHHHHHHHHHH-HHcCCccccCC
Confidence 667788999999986 7777654332 22110 1111 12344555655567 88999998764
No 395
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=21.84 E-value=5.7e+02 Score=27.97 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=49.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh-h
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~ 522 (658)
..++|+|.|.+.++..++....+.|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+. +
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 34677888777777555544433343 45544 365554333 23456777766531 11111111 3
Q ss_pred ccEEEEcceeEecCCCeecccchH-------HHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
..+|++ .|- -|..|+. .++-+|+.+++++++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344433 222 3666654 355678889988775
No 396
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=21.67 E-value=6.2e+02 Score=24.97 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=52.3
Q ss_pred CEEEeeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHh-------hh
Q 006164 456 DVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYII-------HE 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM-------~~ 522 (658)
.+||..|-+..|...|. ...++| .+|+++..++ .....+..+|...+.++.++ .| ..+..++ ..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGE-AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 35777776655543333 333444 3788776554 23344555665555454433 12 2232222 24
Q ss_pred ccEEEEcceeEecCCCe-------------ecccchHHHHHHH----HhCCCCeEeec
Q 006164 523 VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~A----k~~~VPVyV~a 563 (658)
+|.||..|-.. ..+.. .|-.|+..+.-.+ +.+++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67777766322 11111 3667777666555 44565555544
No 397
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=21.66 E-value=1.4e+02 Score=33.54 Aligned_cols=111 Identities=13% Similarity=0.153 Sum_probs=62.8
Q ss_pred cCCCEEEeeCCh---HHHH-HHHHHHHHcCCeeEEEEeC------------CCCCchHHHHH--HHHHhCCCC---EEEE
Q 006164 453 RDGDVLLTYGSS---SAVE-MILQHAHELGKQFRVVIVD------------SRPKHEGKLLL--RRLVRKGLS---CTYT 511 (658)
Q Consensus 453 ~dgdvILT~g~S---saV~-~vL~~A~e~gk~f~ViV~E------------SRP~~EG~~La--~eL~~~GI~---vTlI 511 (658)
.+..++||++-. +-+. .+|..+.++ +.+.++|+- .-|.+.|...+ .+|.+.||+ =++|
T Consensus 50 ~~~tvfLtltgamisaGLr~~ii~~LIr~-g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~dv~i 128 (384)
T PRK00770 50 DGVTVGLTLSGAMTPAGFGVSALAPLIEA-GFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIYDIIF 128 (384)
T ss_pred cCCcEEEEeccchhhhhcChHHHHHHHHc-CCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCcccccCc
Confidence 456778888753 4466 678887764 457888762 23666776443 788999965 3555
Q ss_pred cchHHHHHhhhccEEEEcce--eEecCCCeecccchH-------------HHHHHHHhCCCCeEeecc
Q 006164 512 HINAISYIIHEVTRVFLGAS--SVLSNGTVCSRVGTA-------------CVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 512 ~DsAv~~iM~~Vd~VivGAd--aVlaNG~VvNKiGT~-------------~lAl~Ak~~~VPVyV~ae 564 (658)
+......+-+-++.++=++. ..+.-+.++..+|-+ .+-..|..++|||||=+.
T Consensus 129 p~e~~~~~e~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~ 196 (384)
T PRK00770 129 DYDVLLETDAFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSP 196 (384)
T ss_pred ChHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCc
Confidence 54444333333444443332 112222222233333 233467778999998554
No 398
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=21.55 E-value=1.3e+03 Score=27.51 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=49.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcch--HHHHHhhhccEEEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHIN--AISYIIHEVTRVFL 528 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~Ds--Av~~iM~~Vd~Viv 528 (658)
.+...|+|++-+.|...|..-.+..+-=.+-+.-|-|..+-..|...... ..+.|-++... .+|.-+.-.+.|+.
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 35789999999988777776655444457888899998877777755442 44666665544 44544545555443
No 399
>PRK07337 aminotransferase; Validated
Probab=21.55 E-value=6.5e+02 Score=27.23 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=50.0
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH-------HHHHhh----
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH---- 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA-------v~~iM~---- 521 (658)
...++++|.|.+.++..++....+.| -+|++. .|.+.+.... +...|..+..+.... +..+.+
T Consensus 89 ~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (388)
T PRK07337 89 APERIVVTAGASAALLLACLALVERG--DEVLMP--DPSYPCNRHF--VAAAEGRPVLVPSGPAERFQLTAADVEAAWGE 162 (388)
T ss_pred ChHhEEEecCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHcCCEEEEeecCCccCCcCCHHHHHhhcCc
Confidence 44567888888887755544443333 245544 4666554332 234576666664211 122222
Q ss_pred hccEEEEcceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++..|++ .| .-|..|+ ..++-+|+.|++.+++
T Consensus 163 ~~~~v~l------~~--p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 201 (388)
T PRK07337 163 RTRGVLL------AS--PSNPTGTSIAPDELRRIVEAVRARGGFTIV 201 (388)
T ss_pred cceEEEE------EC--CCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 2333332 22 2366666 5567778888876554
No 400
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.52 E-value=8.2e+02 Score=24.43 Aligned_cols=35 Identities=0% Similarity=-0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCEEEEcc---hHHHHHhhhccEEEEc
Q 006164 495 KLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLG 529 (658)
Q Consensus 495 ~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivG 529 (658)
.++++.+.+.|+++..|+. +.++-+...+|.+|.=
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v 165 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV 165 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEe
Confidence 3456777778888888876 4444433346665543
No 401
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.44 E-value=1.8e+02 Score=25.94 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 491 ~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
..+-.++++.+.+.|+++..|+++.-..+-+.+|.+|.-.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3344556677788888888888887777777788877544
No 402
>PRK07505 hypothetical protein; Provisional
Probab=21.42 E-value=9.9e+02 Score=26.10 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=50.9
Q ss_pred CEEEeeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcc---hHHHHHhhhccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~D---sAv~~iM~~Vd~Viv 528 (658)
+.+++.+.+.+++.+|..+.. .+.+..|++.+. ..-|.-. ...+...+.++..+.- ..+...+..-+.+++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 666666667777777755432 112223554432 1112111 1223334555555532 233344432223444
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=++-+...|.++. -..+.-+|++|++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 4466777777766 35666788999875544
No 403
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=21.37 E-value=1e+03 Score=25.55 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH----cCCeeEEEEeCC-CCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHh
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYII 520 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e----~gk~f~ViV~ES-RP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM 520 (658)
...+++|.|-+.++..+++.+.. ....-+|++.+. .|.+.. ....+...|+++.++... .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34677777766666555544321 122235666553 233322 224456689988888421 222222
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. +...|++ ...=-..|.+.. + ..++-+|+.++++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2233333 211112333333 2 3577788999988775
No 404
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.35 E-value=3.6e+02 Score=26.96 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=24.0
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+=|.+|+ |-..|. .--+..++-.||.+|+|++.++..
T Consensus 111 ~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4455553 334443 233456777899999999999753
No 405
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.23 E-value=3.6e+02 Score=26.18 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|.+.+-...++...+.|..+.|| + |.. ..+|.+.+ .++++...--..-+...|.||...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-Ccc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999987666666666667766655 2 322 22222222 12232221111123455666554322
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.-+| ..++..|+.+ ++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2334 5677788874 6887654
No 406
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.18 E-value=1.3e+03 Score=26.72 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHH-HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-HHHHHhhh--ccEEEEc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIHE--VTRVFLG 529 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~-e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-Av~~iM~~--Vd~VivG 529 (658)
.|..++.++..+.+..+.+-+. +.|... +.+-+.-......+...|...+..+.+..|. .+...+.+ .|.||
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v--v~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~Pdlii-- 367 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEV--VGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELVL-- 367 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeE--EEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEE--
Confidence 5788899987766556555555 456544 4444433333455556677777666665663 33334443 44442
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
|+..-..+|+..+||+++++
T Consensus 368 --------------G~~~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 368 --------------GTQMERHSAKRLGIPCAVIS 387 (519)
T ss_pred --------------EcchHHHHHHHcCCCEEEec
Confidence 44455668999999998775
No 407
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=21.11 E-value=3.9e+02 Score=25.08 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEeeCChHHHHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHh
Q 006164 458 LLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVR 503 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~ 503 (658)
|.||.....+..+|....+ ....++|+|++.....+....++.+..
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~ 52 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA 52 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHh
Confidence 4555555444443333221 123455665555544444444444433
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.09 E-value=1.8e+02 Score=33.40 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
+..|+.+|.+.+=..+.+.+++.| ..|+|.|.||.-++.... .|...||.+..-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g 60 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELG 60 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecC
Confidence 778888887533224445555545 789999999988555444 566666665554
No 409
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=21.06 E-value=1.2e+02 Score=32.36 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=26.2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+.|--||-.++-.| .-|++|-+|||||..++..-+++..
T Consensus 124 ~~v~iNG~~~gE~~--lna~~Ag~~GVPV~lVsGD~~l~~e 162 (265)
T PF04951_consen 124 HEVRINGREVGEFG--LNAALAGYYGVPVVLVSGDDALCEE 162 (265)
T ss_dssp EEEEETTEEE-HHH--HHHHHHHHTT--EEEEEEEHHHHHH
T ss_pred eeEEECCEEcchhH--HHHHHHhhcCCcEEEEeCcHHHHHH
Confidence 34555776666554 4689999999999998877766654
No 410
>PRK07454 short chain dehydrogenase; Provisional
Probab=21.02 E-value=8.1e+02 Score=24.14 Aligned_cols=74 Identities=19% Similarity=0.086 Sum_probs=41.7
Q ss_pred CCCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh------
Q 006164 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (658)
++.+||..|.+.-+. .+.+.+.++|. +|+++. |...+...+...+.+.+-.+.++ .| ..+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456788888766553 33445555554 677775 44444555666666655555443 33 23334444
Q ss_pred -hccEEEEcc
Q 006164 522 -EVTRVFLGA 530 (658)
Q Consensus 522 -~Vd~VivGA 530 (658)
.+|.||-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 368777655
No 411
>PRK10444 UMP phosphatase; Provisional
Probab=21.02 E-value=9.3e+02 Score=25.02 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
.+|...+++|+ .++++-.|+......+++.|...|++
T Consensus 24 ~~l~~L~~~g~--~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 24 EFLHRILDKGL--PLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred HHHHHHHHCCC--eEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 44555554443 55666666666666777777777764
No 412
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.81 E-value=9e+02 Score=26.69 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=46.1
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchHHHHHhh----hccEEEEcce
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGAS 531 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~Vd~VivGAd 531 (658)
|++-+.+.++..+|....+.|. +|++ +.|.+.|. .+. ..+...|+.++++.......+.+ +..+|++- .
T Consensus 80 i~~~sG~~Ai~~~l~all~~Gd--~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie-~ 154 (388)
T PRK07811 80 RAFSSGMAATDCLLRAVLRPGD--HIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVE-T 154 (388)
T ss_pred EEeCCHHHHHHHHHHHHhCCCC--EEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEE-C
Confidence 3333334455444444433333 5555 34666543 333 33445688877764322222222 33344332 1
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-.-..|.+ .--..++-+|+.|+++++|=
T Consensus 155 p~NPtg~~---~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 155 PTNPLLSI---TDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred CCCCccee---cCHHHHHHHHHHcCCEEEEE
Confidence 00112222 23345777889999887764
No 413
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.79 E-value=9.2e+02 Score=28.08 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=41.8
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
.-.|.+|+.+|++..=..+...++..| .+|+|+|..|...- .+ ...|..+. . +..+++.+|.|++-
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~--~A---~~~G~~~~--~---leell~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICAL--QA---AMEGYQVV--T---LEDVVETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHH--HH---HhcCceec--c---HHHHHhcCCEEEEC
Confidence 346899999999986555566665444 47999988876421 11 22465432 1 23456788888763
No 414
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.79 E-value=5e+02 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=38.2
Q ss_pred CEEEeeC-----ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch
Q 006164 456 DVLLTYG-----SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 456 dvILT~g-----~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds 514 (658)
..||.+| .|++|.++|.+...+| +++|=++..-...=..+...|.....+..+.+|.
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC
Confidence 3456674 5899988887777666 6766555444444445667777777777777764
No 415
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=20.74 E-value=1.1e+03 Score=26.24 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CCc-----hH----HHHHHHHHhCC
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH-----EG----KLLLRRLVRKG 505 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~~-----EG----~~La~eL~~~G 505 (658)
++..+.++|. +..||..|.+.+=..++..+...|.. +++++|.. -.+ -| ..++++|.+..
T Consensus 31 ~g~~~q~~l~-~~~VliiG~GglG~~v~~~La~~Gvg-~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 31 FGIEQQERLH-NARVLVIGAGGLGCPAMQSLASAGVG-TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred hCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 5666666775 46888999876655556666666753 33333322 110 12 12235666543
Q ss_pred --CCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 506 --LSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 506 --I~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++++.+. ...+..+++++|.||-+.|.+. --+.+.-+|..+++|++-+
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~---------~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFA---------TKFLVADAAEITGTPLVWG 162 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 5555443 2234456788999998888743 2446667899999998755
No 416
>PRK06290 aspartate aminotransferase; Provisional
Probab=20.73 E-value=7.2e+02 Score=27.59 Aligned_cols=55 Identities=16% Similarity=0.051 Sum_probs=31.1
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
+... ++++|.|...++..++......|. .|++.+ |.+.+.... +...|.++..+.
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd--~Vlv~~--P~y~~~~~~--~~~~g~~v~~v~ 158 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGD--VTLMTV--PGYPVTGTH--TKYYGGEVYNLP 158 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCC--EEEEeC--CCCccHHHH--HHHcCCEEEEEe
Confidence 4443 688999988888555544433332 444433 666554332 334677766664
No 417
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=20.63 E-value=7.5e+02 Score=25.76 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=47.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH-HHHhCCCCEEEEcc-------hHHHHHhhh---
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGLSCTYTHI-------NAISYIIHE--- 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~-eL~~~GI~vTlI~D-------sAv~~iM~~--- 522 (658)
..+.|+|.+-+.++..++..... ..-.|++.+ |.+....... ...-.|+++..+.. ..+...+.+
T Consensus 47 ~~~~~~~~~gt~a~~~~~~~l~~--~gd~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~ 122 (338)
T cd06502 47 KEAALFVPSGTAANQLALAAHTQ--PGGSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD 122 (338)
T ss_pred CCeEEEecCchHHHHHHHHHhcC--CCCeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC
Confidence 45677777666666555544433 334566654 3322211110 11116777766632 233333321
Q ss_pred -----ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 -----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 -----Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+|++- .....|+++..---..++-+|+.|++.|+|
T Consensus 123 ~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 123 IHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 2233321 122224444332223466678888888776
No 418
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=20.57 E-value=5.7e+02 Score=24.77 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC-CEEEEcchHHHHHhhhccEEEEc
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL-SCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI-~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+..+.+||-.|.++-...+ . +.+.+...+|+.+|-.|.. ..++ +.+...|+ +++++...+-..+-...|.|+++
T Consensus 29 ~~~~~~vLDiG~G~G~~~~-~-la~~~~~~~v~~vD~s~~~--~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSI-E-AALQFPSLQVTAIERNPDA--LRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred CCCCCEEEEECCcCCHHHH-H-HHHHCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEEC
Confidence 3578899999988754221 1 2223455789999987742 3344 33444555 46777644422222356777664
No 419
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.55 E-value=5.7e+02 Score=29.16 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=40.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+..|+.+|.+..=..+.+.+++.| ++|++.|.++..+ ....|.+.|+.+.+....-....+..+|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~---~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPP---NLAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCch---hHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 456788776533223445555555 5899999887543 2345777765544433221123345788887764
No 420
>PRK07877 hypothetical protein; Provisional
Probab=20.54 E-value=8.3e+02 Score=29.94 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHH-HHHHHHHcCC--eeEEE---EeC-C---CC----CchHH---H-HHHHHHhC
Q 006164 443 VIVKHAVTKIRDGDVLLTYGSSSAVEM-ILQHAHELGK--QFRVV---IVD-S---RP----KHEGK---L-LLRRLVRK 504 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~-vL~~A~e~gk--~f~Vi---V~E-S---RP----~~EG~---~-La~eL~~~ 504 (658)
.|++.+.++|. +..|+..|.+ |.. ++..+...|. ++.++ ++| | |- ..-|. . +++.|.+.
T Consensus 96 ~ig~~~Q~~L~-~~~V~IvG~G--lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i 172 (722)
T PRK07877 96 KITAEEQERLG-RLRIGVVGLS--VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL 172 (722)
T ss_pred hCCHHHHHHHh-cCCEEEEEec--HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH
Confidence 46777777776 4677777775 322 2333444563 34443 122 1 11 11122 1 23555554
Q ss_pred --CCCEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 505 --GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 505 --GI~vTlI~D----sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.|+++.+.. ..+-.++..+|.||=++|.+- .=+.+--.|..++||++..+.
T Consensus 173 np~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~---------~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 173 DPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLD---------VKVLLREAARARRIPVLMATS 229 (722)
T ss_pred CCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEcC
Confidence 467766653 346667788999999998642 234666789999999999875
No 421
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=20.50 E-value=4.8e+02 Score=26.96 Aligned_cols=22 Identities=9% Similarity=-0.057 Sum_probs=18.4
Q ss_pred cchHHHHHHHHhCCCCeEeecc
Q 006164 543 VGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 543 iGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.=++.++.+|+++|+|+.+++-
T Consensus 181 ME~aa~~~vA~~~gv~~~~i~~ 202 (241)
T TIGR01694 181 MTGVPEAVLARELELCYATLAL 202 (241)
T ss_pred ccHHHHHHHHHHCCCCEEEEEE
Confidence 3467899999999999998863
No 422
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=20.43 E-value=1.9e+02 Score=32.85 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHc-----C-------CeeEEEEeCCCC-----CchHHHHHHHHHhCCCCEEEE-cchHHHHHhhhc
Q 006164 462 GSSSAVEMILQHAHEL-----G-------KQFRVVIVDSRP-----KHEGKLLLRRLVRKGLSCTYT-HINAISYIIHEV 523 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~-----g-------k~f~ViV~ESRP-----~~EG~~La~eL~~~GI~vTlI-~DsAv~~iM~~V 523 (658)
|++.-|+++|..+.+. | ..+.|+|+--.. .....+++..|.+.||.|.+- .+..++.-|+.+
T Consensus 315 ~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a 394 (439)
T PRK12325 315 SYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATM 394 (439)
T ss_pred eeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHH
Confidence 4554455555444443 4 246777664311 123456678899999988774 334667777654
Q ss_pred c
Q 006164 524 T 524 (658)
Q Consensus 524 d 524 (658)
+
T Consensus 395 ~ 395 (439)
T PRK12325 395 D 395 (439)
T ss_pred H
Confidence 4
No 423
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.42 E-value=8.6e+02 Score=24.25 Aligned_cols=37 Identities=5% Similarity=-0.187 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
.+-..+++.+.+.|+++..|+-+.-+.+-+.+|.+|.
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~ 161 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIR 161 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 3444566788888999888887665666666888874
No 424
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=20.40 E-value=3.3e+02 Score=25.35 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=23.0
Q ss_pred EEeeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHh
Q 006164 458 LLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVR 503 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~ 503 (658)
|.||.....+..+|....++. ..++|+|++.........+++++..
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~ 51 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA 51 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH
Confidence 445555455555555555442 3566666654444444444444443
No 425
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=20.36 E-value=4.3e+02 Score=27.83 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=12.2
Q ss_pred eecccchHHHHHHHHhCCCCeEeec
Q 006164 539 VCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 539 VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++-+.|......+++ -+.+++||.
T Consensus 183 vilk~~~~~~~~l~~-~~~~~~v~e 206 (249)
T TIGR02434 183 VVMLDGEQAFQRVDP-EDIDIYWGA 206 (249)
T ss_pred EEEECCccCHHHhcC-CCCEEEEEE
Confidence 444555554444443 355666653
No 426
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=20.27 E-value=3e+02 Score=29.24 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH---HHHHhh--hccEEEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIH--EVTRVFL 528 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA---v~~iM~--~Vd~Viv 528 (658)
...+|+|.|.+.++..++. +... . .|++. .|.+.+...+ +...|+++..+.... .-..++ ++.+|++
T Consensus 57 ~~~I~it~Gs~~~l~~~~~-~~~~--~-~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~~~~k~v~l 128 (332)
T PRK06425 57 KIKVLIGPGLTHFIYRLLS-YINV--G-NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNNYNFDLIFI 128 (332)
T ss_pred cceEEECCCHHHHHHHHHH-HhCC--C-cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhhcCCCEEEE
Confidence 3457788888888865553 4322 2 56666 4877654443 344688887775321 111222 3344433
Q ss_pred cceeEecCCCeecccch-------HHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
+ +--|..|+ ..++-.|++|++.+++
T Consensus 129 -------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 129 -------V-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred -------e-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 34566666 5566678888886654
No 427
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=20.27 E-value=3.1e+02 Score=32.63 Aligned_cols=102 Identities=28% Similarity=0.421 Sum_probs=67.5
Q ss_pred HHHHHhccCCCEEEee-CC-hHHHHHHHHHHHHcCCeeEEEEeCCCC-C---chHH--HHHHHHHhCCCCE----EEEcc
Q 006164 446 KHAVTKIRDGDVLLTY-GS-SSAVEMILQHAHELGKQFRVVIVDSRP-K---HEGK--LLLRRLVRKGLSC----TYTHI 513 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~-g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP-~---~EG~--~La~eL~~~GI~v----TlI~D 513 (658)
+-+.++++-|..||.= |. +.-+..++....+.+.+.-.+|+|.+. . .||+ ++.+.+.+.||+- ...+.
T Consensus 235 EEa~~klr~Gm~i~iReGS~a~dl~~l~~~i~e~~~~~~~lcTDD~~p~dl~~eGhld~~vR~Ai~~Gv~p~~a~qmAti 314 (584)
T COG1001 235 EEALEKLRLGMKIMIREGSAAKDLAALLPAITELGSRRVMLCTDDRHPDDLLEEGHLDRLVRRAIEEGVDPLDAYQMATI 314 (584)
T ss_pred HHHHHHHhCCcEEEEEcCchhhhHHHHHHHHhhcCCceEEEECCCCChhHhhhcCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4566778889888887 43 345767677677777665667777555 3 3675 6679999999862 22344
Q ss_pred hHHHHH-hh---------hccEEEE------cceeEecCCCeecccchHH
Q 006164 514 NAISYI-IH---------EVTRVFL------GASSVLSNGTVCSRVGTAC 547 (658)
Q Consensus 514 sAv~~i-M~---------~Vd~Viv------GAdaVlaNG~VvNKiGT~~ 547 (658)
|++-|+ +. .+|.||+ ....|+.||.++.+-|-..
T Consensus 315 N~A~~~gl~~~G~iAPG~~ADlvi~~DL~~~~v~~V~~~G~~v~~~g~~l 364 (584)
T COG1001 315 NPAEHYGLDDLGLIAPGRRADLVILEDLRNFKVTSVLIKGRVVAEDGKAL 364 (584)
T ss_pred CHHHHcCCcccccccCCccccEEEEcccccCceeEEEECCEEEecCCcee
Confidence 444333 22 5677776 4677888888888888543
No 428
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=20.23 E-value=9e+02 Score=25.74 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----hHHHHHhhhccEEE
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-D----sAv~~iM~~Vd~Vi 527 (658)
.+.+||..|-+.-|.. +++.+.++| .+|+++.-.+ .....+...+.. +-.++++. | ..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 3567888887655533 334444445 5677664332 223333333332 33455442 2 34556677889888
Q ss_pred EcceeEecCC-----Ce-----ec-----ccchHHHHHHHHhCC-CCeEeeccc
Q 006164 528 LGASSVLSNG-----TV-----CS-----RVGTACVAMVAYGFH-IPVLVCCEA 565 (658)
Q Consensus 528 vGAdaVlaNG-----~V-----vN-----KiGT~~lAl~Ak~~~-VPVyV~aet 565 (658)
--|-..-.+. +. .| -.||..+.-+|+.++ +.-+|..-+
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 7774322111 00 12 268888888877764 665655444
No 429
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.19 E-value=4.7e+02 Score=26.86 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=50.6
Q ss_pred EEeCCCCCchHHHHHHHHHhCCCCEEEEc---chHHHHH---hhhccEEEEcceeEecC-----------CCeecccchH
Q 006164 484 VIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYI---IHEVTRVFLGASSVLSN-----------GTVCSRVGTA 546 (658)
Q Consensus 484 iV~ESRP~~EG~~La~eL~~~GI~vTlI~---DsAv~~i---M~~Vd~VivGAdaVlaN-----------G~VvNKiGT~ 546 (658)
-|+-..+..+...+++.|.+.||++.=|+ ..+.-.+ -++.+.++|||-+|+.- .-+++..-.-
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~ 87 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQ 87 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCH
Confidence 34556667778888999999998764443 3343332 22566799999777632 1245555566
Q ss_pred HHHHHHHhCCCCeEe
Q 006164 547 CVAMVAYGFHIPVLV 561 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (658)
.+.-.|+++++|++-
T Consensus 88 ~vi~~a~~~~i~~iP 102 (201)
T PRK06015 88 ELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHcCCCEeC
Confidence 666677777777774
No 430
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=20.10 E-value=2.3e+02 Score=27.70 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCEEEEcchHHHHH---hhhccEEEE-cceeEecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 496 LLLRRLVRKGLSCTYTHINAISYI---IHEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~i---M~~Vd~Viv-GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.+++.|.+.|+++.++....-... ..++|.||+ |-. |+ ..+.+.+...+-+-..++||+-+|=-+
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~-----~~-~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGP-----GH-PEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCC-----CC-cccchhHHHHHHHHhcCCCEEEECHhH
Confidence 456777888888888876544322 246888776 332 11 112222222222224579999877544
No 431
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=20.03 E-value=1.1e+03 Score=26.32 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CCc-----hHH---H-HHHHHHhCC
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH-----EGK---L-LLRRLVRKG 505 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~~-----EG~---~-La~eL~~~G 505 (658)
++..+.+++. ...||..|.+.+=..++..+...|.. ++.++|.. -.+ -|+ . +++.|.+..
T Consensus 32 ~g~~~q~~L~-~~~VlviG~GGlGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 109 (392)
T PRK07878 32 VGVDGQKRLK-NARVLVIGAGGLGSPTLLYLAAAGVG-TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN 109 (392)
T ss_pred cCHHHHHHHh-cCCEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC
Confidence 5566666665 46788888875544455555556765 34443321 111 121 1 235566544
Q ss_pred --CCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 506 --LSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 506 --I~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.++.+. ...+..+++.+|.||.+.|.+. --+.+.-+|..++|||+.+
T Consensus 110 p~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~---------~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 110 PLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFA---------TRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred CCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 5554442 2234556788999988776542 3455777899999997654
No 432
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.02 E-value=1.8e+02 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP 490 (658)
.+||..|.+..-..+++.|.+.|- +|+++++.+
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~--~~v~~~~~~ 35 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGI--RTVAIYSEA 35 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC--eEEEEechh
Confidence 368999999876688888988764 555555443
No 433
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.01 E-value=1.9e+02 Score=30.45 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=53.0
Q ss_pred hccCCCEEEeeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH----HHHHHhCCCCEEEEcchHHHHHhhh
Q 006164 451 KIRDGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 451 ~I~dgdvILT~g~S----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L----a~eL~~~GI~vTlI~DsAv~~iM~~ 522 (658)
++.+|+.|+.++-| .+...+ +.|.+.-..++|+|+||+-..-|..+ +.+|.+.|....=|.. .+-.+..+
T Consensus 74 l~~~~~~vi~i~iSs~lSgty~~a-~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~~-~l~~~~~~ 151 (275)
T TIGR00762 74 LLEEGDEVLSIHLSSGLSGTYQSA-RQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEILA-KLEELRER 151 (275)
T ss_pred HHhCCCeEEEEEcCCchhHHHHHH-HHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHhh
Confidence 33456666666544 444333 33333323458999999987766543 4788888875222211 11111223
Q ss_pred ccEEEEcc--eeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 523 VTRVFLGA--SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VivGA--daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+..+|+=- +-+..+|. ++++ .|++++-.++--++.+
T Consensus 152 ~~~~f~v~~L~~L~~gGR-is~~----~~~~g~lL~ikPIi~~ 189 (275)
T TIGR00762 152 TKLYFVVDTLEYLVKGGR-ISKA----AALIGSLLNIKPILTV 189 (275)
T ss_pred cEEEEEECcHHHHHhcCC-ccHH----HHHHHHhhcceeEEEE
Confidence 32222211 22333443 3443 4567777776544443
Done!