Query 006164
Match_columns 658
No_of_seqs 279 out of 1458
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvk_A Methylthioribose-1-phos 100.0 3.5E-71 1.2E-75 593.4 26.1 321 297-656 36-373 (374)
2 3a11_A Translation initiation 100.0 1.3E-70 4.5E-75 583.1 29.6 312 309-653 14-327 (338)
3 2a0u_A Initiation factor 2B; S 100.0 1E-69 3.4E-74 583.7 31.6 315 297-643 25-369 (383)
4 1t9k_A Probable methylthioribo 100.0 3.6E-70 1.2E-74 581.1 26.4 311 297-649 14-341 (347)
5 1t5o_A EIF2BD, translation ini 100.0 2.1E-69 7.3E-74 575.9 28.5 311 300-651 12-339 (351)
6 3ecs_A Translation initiation 100.0 4.1E-63 1.4E-67 520.5 23.6 283 349-652 21-305 (315)
7 1vb5_A Translation initiation 100.0 1.7E-62 5.9E-67 508.1 26.1 274 328-645 2-275 (276)
8 1w2w_B 5-methylthioribose-1-ph 100.0 2E-47 7E-52 376.3 8.0 164 478-646 2-184 (191)
9 1w2w_A 5-methylthioribose-1-ph 99.9 7.4E-23 2.5E-27 204.0 13.3 165 296-481 14-208 (211)
10 1uj6_A Ribose 5-phosphate isom 98.0 1.5E-05 5.1E-10 80.3 9.9 116 440-571 8-130 (227)
11 2f8m_A Ribose 5-phosphate isom 97.7 6.8E-05 2.3E-09 76.4 8.7 119 439-571 11-137 (244)
12 1lk5_A D-ribose-5-phosphate is 97.6 0.00015 5.3E-09 73.0 9.6 117 440-571 6-129 (229)
13 1m0s_A Ribose-5-phosphate isom 97.6 8.9E-05 3E-09 74.4 7.5 118 440-571 6-125 (219)
14 3kwm_A Ribose-5-phosphate isom 97.5 0.00016 5.6E-09 72.7 8.4 119 440-571 12-131 (224)
15 3hhe_A Ribose-5-phosphate isom 97.3 0.00054 1.8E-08 70.2 8.9 119 440-572 27-149 (255)
16 1xtz_A Ribose-5-phosphate isom 97.3 0.00033 1.1E-08 72.1 7.0 118 440-571 21-152 (264)
17 1o8b_A Ribose 5-phosphate isom 97.2 7.4E-05 2.5E-09 74.9 1.2 118 440-571 6-125 (219)
18 3l7o_A Ribose-5-phosphate isom 97.1 0.0011 3.9E-08 66.6 8.8 118 440-572 4-127 (225)
19 2pjm_A Ribose-5-phosphate isom 96.9 0.004 1.4E-07 62.7 10.7 118 440-572 6-129 (226)
20 3uw1_A Ribose-5-phosphate isom 96.6 0.0028 9.6E-08 64.3 7.1 119 441-572 15-138 (239)
21 4gmk_A Ribose-5-phosphate isom 90.1 0.3 1E-05 49.2 5.3 114 440-571 7-129 (228)
22 3ixq_A Ribose-5-phosphate isom 84.9 1.9 6.5E-05 43.3 7.5 117 441-571 7-128 (226)
23 3rrl_A Succinyl-COA:3-ketoacid 83.0 4.6 0.00016 40.5 9.4 22 522-543 151-172 (235)
24 1jw9_B Molybdopterin biosynthe 79.2 7.4 0.00025 38.8 9.4 109 444-563 21-153 (249)
25 3hgm_A Universal stress protei 78.4 20 0.00067 31.1 11.0 60 499-562 77-147 (147)
26 3ic5_A Putative saccharopine d 77.3 15 0.00053 30.5 9.6 99 455-569 5-106 (118)
27 3g0t_A Putative aminotransfera 77.3 14 0.00047 38.3 11.2 104 454-562 105-221 (437)
28 3s3t_A Nucleotide-binding prot 75.5 23 0.00079 30.7 10.6 59 500-562 77-145 (146)
29 3i6i_A Putative leucoanthocyan 75.5 7.2 0.00025 39.7 8.3 102 455-563 10-118 (346)
30 2hj0_A Putative citrate lyase, 75.1 20 0.0007 39.9 12.3 112 441-566 253-417 (519)
31 1poi_B Glutaconate coenzyme A- 75.1 15 0.0005 37.4 10.3 93 441-540 8-116 (260)
32 4gx0_A TRKA domain protein; me 74.0 4.8 0.00016 44.5 7.0 107 447-564 315-441 (565)
33 3e8x_A Putative NAD-dependent 73.7 6.7 0.00023 37.4 7.2 98 454-566 20-132 (236)
34 1jeo_A MJ1247, hypothetical pr 69.9 28 0.00094 32.0 10.2 84 446-530 31-133 (180)
35 4dq6_A Putative pyridoxal phos 68.9 22 0.00076 35.9 10.1 101 454-561 90-202 (391)
36 3dlo_A Universal stress protei 68.6 65 0.0022 28.8 12.9 104 456-562 26-154 (155)
37 2z08_A Universal stress protei 68.5 56 0.0019 28.0 12.3 55 504-562 73-136 (137)
38 3dqp_A Oxidoreductase YLBE; al 68.5 11 0.00037 35.5 7.2 100 457-565 2-106 (219)
39 3h14_A Aminotransferase, class 67.5 27 0.00092 35.5 10.5 102 453-561 90-199 (391)
40 3llv_A Exopolyphosphatase-rela 66.8 23 0.00079 31.0 8.6 91 455-562 6-101 (141)
41 1vim_A Hypothetical protein AF 65.9 44 0.0015 31.6 10.9 83 446-528 38-139 (200)
42 1qz9_A Kynureninase; kynurenin 65.8 32 0.0011 35.2 10.7 100 455-561 89-200 (416)
43 2o8r_A Polyphosphate kinase; s 65.2 7.4 0.00025 45.1 6.1 45 467-511 386-432 (705)
44 3cdk_A Succinyl-COA:3-ketoacid 65.1 37 0.0013 33.9 10.6 44 522-571 151-198 (241)
45 1t3i_A Probable cysteine desul 63.6 1.2E+02 0.0041 30.6 14.5 101 455-561 91-204 (420)
46 3kax_A Aminotransferase, class 63.1 26 0.0009 35.2 9.3 101 454-561 82-194 (383)
47 1m3s_A Hypothetical protein YC 62.4 46 0.0016 30.6 10.2 37 493-529 94-130 (186)
48 3d3u_A 4-hydroxybutyrate COA-t 61.4 46 0.0016 36.0 11.4 43 524-566 307-360 (439)
49 3dzz_A Putative pyridoxal 5'-p 61.1 37 0.0013 34.2 10.0 101 455-562 86-199 (391)
50 2gas_A Isoflavone reductase; N 61.1 30 0.001 34.0 9.1 99 455-562 2-110 (307)
51 3c85_A Putative glutathione-re 60.8 32 0.0011 31.6 8.7 86 455-556 39-130 (183)
52 3tnj_A Universal stress protei 60.8 83 0.0028 27.2 11.7 57 503-563 82-146 (150)
53 2dr1_A PH1308 protein, 386AA l 60.6 70 0.0024 32.0 12.0 97 457-561 74-181 (386)
54 3ezs_A Aminotransferase ASPB; 60.6 50 0.0017 33.1 10.9 103 454-561 82-192 (376)
55 4ds3_A Phosphoribosylglycinami 60.3 20 0.00069 35.2 7.5 70 457-530 11-94 (209)
56 3ruf_A WBGU; rossmann fold, UD 60.2 55 0.0019 32.8 11.1 109 454-565 24-151 (351)
57 1y8q_A Ubiquitin-like 1 activa 60.0 1.2E+02 0.0042 31.5 14.0 108 444-562 26-156 (346)
58 3sho_A Transcriptional regulat 59.3 86 0.0029 28.7 11.5 38 493-530 102-139 (187)
59 1k6d_A Acetate COA-transferase 59.2 32 0.0011 33.8 8.8 43 522-570 148-194 (220)
60 2w48_A Sorbitol operon regulat 59.2 14 0.00047 38.0 6.4 90 442-532 93-214 (315)
61 3l9w_A Glutathione-regulated p 59.2 19 0.00063 38.8 7.7 91 455-562 4-99 (413)
62 1kmj_A Selenocysteine lyase; p 59.1 1.5E+02 0.0051 29.7 15.0 101 455-561 86-199 (406)
63 3idf_A USP-like protein; unive 58.9 41 0.0014 28.8 8.6 60 499-562 73-137 (138)
64 1eg5_A Aminotransferase; PLP-d 58.6 1.4E+02 0.005 29.5 13.9 99 455-561 62-176 (384)
65 2gm3_A Unknown protein; AT3G01 58.2 24 0.00083 31.9 7.3 63 500-566 95-165 (175)
66 3lvm_A Cysteine desulfurase; s 58.1 89 0.003 31.9 12.4 102 455-561 86-198 (423)
67 1xr4_A Putative citrate lyase 58.1 45 0.0015 37.0 10.7 115 447-562 51-203 (509)
68 3fdb_A Beta C-S lyase, putativ 57.0 48 0.0016 33.2 10.0 101 454-561 81-188 (377)
69 1qyd_A Pinoresinol-lariciresin 57.0 41 0.0014 33.0 9.3 102 456-562 5-114 (313)
70 3mt0_A Uncharacterized protein 56.6 1.5E+02 0.0051 28.9 13.6 98 465-568 22-132 (290)
71 1oi7_A Succinyl-COA synthetase 56.1 11 0.00039 38.5 5.1 107 454-562 64-174 (288)
72 2yv1_A Succinyl-COA ligase [AD 55.9 16 0.00053 37.6 6.1 107 454-562 70-180 (294)
73 3cwc_A Putative glycerate kina 55.8 9.4 0.00032 41.1 4.6 62 492-567 269-330 (383)
74 3rrl_B Succinyl-COA:3-ketoacid 55.7 6.1 0.00021 38.9 2.9 94 441-541 2-111 (207)
75 3tqr_A Phosphoribosylglycinami 55.6 28 0.00097 34.3 7.7 74 457-534 9-96 (215)
76 2fr1_A Erythromycin synthase, 55.6 56 0.0019 35.6 10.9 112 452-565 223-361 (486)
77 1zud_1 Adenylyltransferase THI 55.3 80 0.0027 31.2 11.1 109 444-563 18-150 (251)
78 2huf_A Alanine glyoxylate amin 55.2 74 0.0025 32.0 11.1 98 456-561 72-179 (393)
79 3fdx_A Putative filament prote 55.1 99 0.0034 26.4 10.6 36 522-562 106-142 (143)
80 3jtx_A Aminotransferase; NP_28 55.1 41 0.0014 34.1 9.2 103 454-561 90-206 (396)
81 3l8a_A METC, putative aminotra 54.7 93 0.0032 32.1 12.0 100 455-561 120-232 (421)
82 1wv2_A Thiazole moeity, thiazo 54.5 86 0.003 32.1 11.1 111 449-564 66-195 (265)
83 1jmv_A USPA, universal stress 54.1 1E+02 0.0035 26.3 11.3 57 501-563 73-137 (141)
84 2h1q_A Hypothetical protein; Z 53.5 21 0.0007 36.6 6.5 89 453-571 139-227 (270)
85 2ch1_A 3-hydroxykynurenine tra 53.5 61 0.0021 32.7 10.1 98 456-561 71-178 (396)
86 1svv_A Threonine aldolase; str 53.2 41 0.0014 33.3 8.6 102 455-562 67-183 (359)
87 4eb5_A Probable cysteine desul 52.9 1.8E+02 0.0063 28.8 14.0 96 456-558 62-170 (382)
88 1vjo_A Alanine--glyoxylate ami 52.6 61 0.0021 32.8 9.9 98 456-561 87-194 (393)
89 3f9t_A TDC, L-tyrosine decarbo 52.1 1.4E+02 0.0047 29.7 12.4 101 454-562 86-207 (397)
90 2bfw_A GLGA glycogen synthase; 52.0 57 0.002 29.5 8.8 99 453-562 34-145 (200)
91 1yaa_A Aspartate aminotransfer 51.9 99 0.0034 31.6 11.6 102 454-561 96-214 (412)
92 3ab8_A Putative uncharacterize 51.7 78 0.0027 30.4 10.2 83 473-562 177-267 (268)
93 2hj0_A Putative citrate lyase, 51.5 71 0.0024 35.5 10.9 116 447-562 54-206 (519)
94 3qhx_A Cystathionine gamma-syn 51.5 55 0.0019 33.9 9.6 98 456-562 83-187 (392)
95 2lpm_A Two-component response 51.0 21 0.0007 31.9 5.4 78 478-564 6-87 (123)
96 3loq_A Universal stress protei 51.0 1.2E+02 0.0042 29.6 11.7 104 457-564 173-290 (294)
97 1qyc_A Phenylcoumaran benzylic 50.9 44 0.0015 32.8 8.3 99 455-562 4-111 (308)
98 2r6j_A Eugenol synthase 1; phe 50.7 40 0.0014 33.5 8.1 96 457-562 13-113 (318)
99 3qli_A Coenzyme A transferase; 50.6 25 0.00085 38.7 6.9 96 445-541 29-159 (455)
100 3cai_A Possible aminotransfera 50.5 1.1E+02 0.0039 30.8 11.7 101 455-561 87-200 (406)
101 3dhn_A NAD-dependent epimerase 50.5 36 0.0012 31.8 7.3 100 456-565 5-112 (227)
102 2z61_A Probable aspartate amin 50.5 59 0.002 32.7 9.4 96 455-561 90-188 (370)
103 3kcq_A Phosphoribosylglycinami 50.4 25 0.00085 34.7 6.3 70 457-530 12-90 (215)
104 3kgw_A Alanine-glyoxylate amin 50.3 91 0.0031 31.1 10.8 97 457-561 77-183 (393)
105 4egb_A DTDP-glucose 4,6-dehydr 50.2 28 0.00096 34.9 6.9 111 454-565 23-149 (346)
106 1lc5_A COBD, L-threonine-O-3-p 50.2 72 0.0025 32.0 10.0 98 455-561 77-184 (364)
107 4gqb_A Protein arginine N-meth 50.1 21 0.00072 40.8 6.5 69 456-527 359-433 (637)
108 2dum_A Hypothetical protein PH 50.1 31 0.0011 30.9 6.6 61 499-563 85-155 (170)
109 1x87_A Urocanase protein; stru 49.6 60 0.0021 36.2 9.6 115 373-491 210-366 (551)
110 1c7n_A Cystalysin; transferase 49.3 76 0.0026 32.2 10.1 100 455-561 90-202 (399)
111 3isl_A Purine catabolism prote 49.2 2.2E+02 0.0075 28.6 13.7 98 457-562 64-172 (416)
112 2q7w_A Aspartate aminotransfer 48.5 1.2E+02 0.0042 30.5 11.5 104 454-561 92-210 (396)
113 2e7j_A SEP-tRNA:Cys-tRNA synth 48.5 1.3E+02 0.0045 29.8 11.6 97 456-562 71-183 (371)
114 1vp4_A Aminotransferase, putat 48.4 77 0.0026 32.8 10.1 102 454-561 109-226 (425)
115 1d2f_A MALY protein; aminotran 48.4 83 0.0029 31.8 10.2 100 455-561 88-200 (390)
116 2z9v_A Aspartate aminotransfer 48.4 1.1E+02 0.0036 30.8 11.0 99 455-561 60-169 (392)
117 3cis_A Uncharacterized protein 48.0 1.5E+02 0.0051 29.2 11.9 59 505-567 100-164 (309)
118 2x5d_A Probable aminotransfera 47.9 59 0.002 33.4 9.1 100 455-561 100-210 (412)
119 2zc0_A Alanine glyoxylate tran 47.9 64 0.0022 32.8 9.3 100 455-561 99-213 (407)
120 1qgn_A Protein (cystathionine 47.8 1E+02 0.0035 33.0 11.3 98 456-561 131-235 (445)
121 3vax_A Putative uncharacterize 47.7 2.3E+02 0.0078 28.4 14.2 100 456-561 82-194 (400)
122 3lk7_A UDP-N-acetylmuramoylala 47.6 41 0.0014 36.2 8.0 92 454-560 8-100 (451)
123 3olq_A Universal stress protei 47.5 2.1E+02 0.0071 28.1 12.8 98 465-566 22-152 (319)
124 3rsc_A CALG2; TDP, enediyne, s 47.4 81 0.0028 32.2 10.0 22 547-568 131-152 (415)
125 1lss_A TRK system potassium up 47.3 73 0.0025 27.1 8.3 90 455-561 4-99 (140)
126 3dfz_A SIRC, precorrin-2 dehyd 47.1 16 0.00054 36.3 4.3 92 454-562 30-121 (223)
127 3hdj_A Probable ornithine cycl 47.1 79 0.0027 32.5 9.8 87 454-546 120-215 (313)
128 2yv2_A Succinyl-COA synthetase 46.8 17 0.00059 37.3 4.7 106 455-562 72-181 (297)
129 2bkw_A Alanine-glyoxylate amin 46.6 1E+02 0.0035 30.7 10.4 99 455-561 60-174 (385)
130 1mjh_A Protein (ATP-binding do 46.6 49 0.0017 29.2 7.2 61 499-563 90-158 (162)
131 2oas_A ATOA, 4-hydroxybutyrate 46.4 23 0.0008 38.4 5.9 97 446-542 10-130 (436)
132 3acz_A Methionine gamma-lyase; 46.3 76 0.0026 32.7 9.7 98 456-561 76-179 (389)
133 2gn4_A FLAA1 protein, UDP-GLCN 46.1 57 0.002 33.3 8.6 111 454-567 20-144 (344)
134 2nu8_A Succinyl-COA ligase [AD 46.1 17 0.0006 37.0 4.6 105 455-561 65-173 (288)
135 3ndn_A O-succinylhomoserine su 45.7 64 0.0022 34.0 9.1 97 456-561 98-201 (414)
136 3fwz_A Inner membrane protein 45.7 88 0.003 27.5 8.8 93 455-564 7-106 (140)
137 2cb1_A O-acetyl homoserine sul 45.6 70 0.0024 33.2 9.3 99 456-562 73-176 (412)
138 2ctz_A O-acetyl-L-homoserine s 45.5 72 0.0025 33.4 9.4 97 456-561 75-179 (421)
139 1x92_A APC5045, phosphoheptose 45.5 1.9E+02 0.0064 26.8 13.3 38 493-530 128-168 (199)
140 1tq8_A Hypothetical protein RV 45.4 1.1E+02 0.0039 27.4 9.6 61 499-563 88-157 (163)
141 3ua3_A Protein arginine N-meth 45.3 45 0.0015 38.9 8.2 86 440-527 392-500 (745)
142 3c1o_A Eugenol synthase; pheny 45.1 74 0.0025 31.4 9.0 98 456-562 5-111 (321)
143 2ord_A Acoat, acetylornithine 45.0 1.8E+02 0.0061 29.5 12.1 16 546-561 207-222 (397)
144 2z5l_A Tylkr1, tylactone synth 44.8 96 0.0033 34.1 10.6 112 452-565 256-391 (511)
145 3npg_A Uncharacterized DUF364 44.5 43 0.0015 33.7 7.1 94 453-573 114-207 (249)
146 2ahu_A Putative enzyme YDIF; C 44.5 2.2E+02 0.0075 31.6 13.5 43 522-564 180-227 (531)
147 3mad_A Sphingosine-1-phosphate 44.1 65 0.0022 34.5 9.0 99 458-563 164-276 (514)
148 2g1u_A Hypothetical protein TM 44.1 78 0.0027 28.2 8.2 93 453-562 17-116 (155)
149 2wm3_A NMRA-like family domain 44.0 61 0.0021 31.8 8.1 107 455-565 5-115 (299)
150 2xhz_A KDSD, YRBH, arabinose 5 43.9 95 0.0032 28.3 9.0 39 492-530 110-148 (183)
151 1uwk_A Urocanate hydratase; hy 43.9 60 0.0021 36.2 8.5 115 373-491 215-371 (557)
152 2dou_A Probable N-succinyldiam 43.8 1.2E+02 0.0041 30.4 10.5 99 456-561 89-196 (376)
153 4dik_A Flavoprotein; TM0755, e 43.6 3.2E+02 0.011 29.1 14.2 84 482-568 267-363 (410)
154 2yva_A DNAA initiator-associat 43.5 2E+02 0.0068 26.5 13.0 36 494-529 125-163 (196)
155 2okj_A Glutamate decarboxylase 43.5 1.8E+02 0.0062 31.0 12.4 103 454-561 151-280 (504)
156 2yrr_A Aminotransferase, class 43.5 74 0.0025 31.2 8.7 96 456-561 54-159 (353)
157 2hmt_A YUAA protein; RCK, KTN, 43.4 75 0.0026 27.0 7.8 92 455-562 6-102 (144)
158 1jkx_A GART;, phosphoribosylgl 43.4 55 0.0019 32.0 7.5 70 457-530 4-87 (212)
159 2yvq_A Carbamoyl-phosphate syn 43.4 1.1E+02 0.0037 27.9 9.1 94 453-562 24-131 (143)
160 3etn_A Putative phosphosugar i 43.3 58 0.002 31.4 7.7 37 493-529 121-159 (220)
161 3k6m_A Succinyl-COA:3-ketoacid 43.3 35 0.0012 37.7 6.7 96 440-541 262-373 (481)
162 3ilh_A Two component response 43.1 82 0.0028 26.5 7.9 57 457-513 37-100 (146)
163 2rfv_A Methionine gamma-lyase; 43.1 1.2E+02 0.0041 31.0 10.5 98 456-561 81-184 (398)
164 3zrp_A Serine-pyruvate aminotr 43.0 98 0.0033 30.8 9.6 97 456-561 56-162 (384)
165 3ftb_A Histidinol-phosphate am 42.9 71 0.0024 31.7 8.5 98 454-562 78-183 (361)
166 1m32_A 2-aminoethylphosphonate 42.8 1.2E+02 0.004 29.9 10.1 98 456-561 58-166 (366)
167 3nra_A Aspartate aminotransfer 42.8 89 0.003 31.6 9.4 100 455-561 103-217 (407)
168 2aef_A Calcium-gated potassium 42.4 38 0.0013 32.5 6.2 90 455-563 9-103 (234)
169 2nvv_A Acetyl-COA hydrolase/tr 42.3 57 0.002 36.2 8.3 96 446-542 9-139 (506)
170 4e4t_A Phosphoribosylaminoimid 42.2 28 0.00096 37.1 5.7 77 451-533 31-107 (419)
171 2ay1_A Aroat, aromatic amino a 42.2 1.4E+02 0.0047 30.2 10.7 101 455-561 90-207 (394)
172 2fkn_A Urocanate hydratase; ro 42.2 60 0.0021 36.2 8.1 115 373-491 211-367 (552)
173 2g39_A Acetyl-COA hydrolase; c 42.0 72 0.0025 35.3 9.0 95 446-542 19-144 (497)
174 3da8_A Probable 5'-phosphoribo 42.0 41 0.0014 33.2 6.4 70 457-530 16-97 (215)
175 1ajs_A Aspartate aminotransfer 42.0 1.6E+02 0.0056 29.8 11.3 104 454-561 97-221 (412)
176 2pln_A HP1043, response regula 41.6 1E+02 0.0035 25.9 8.2 77 478-566 16-96 (137)
177 1xr4_A Putative citrate lyase 41.1 2.9E+02 0.0098 30.6 13.7 94 440-543 249-383 (509)
178 3h5i_A Response regulator/sens 41.0 1.1E+02 0.0038 25.9 8.5 80 480-566 5-88 (140)
179 4f4e_A Aromatic-amino-acid ami 40.8 1.5E+02 0.0052 30.4 11.0 100 456-561 119-233 (420)
180 3cis_A Uncharacterized protein 40.7 2.7E+02 0.0093 27.3 12.6 57 504-564 244-306 (309)
181 2fp4_A Succinyl-COA ligase [GD 40.6 25 0.00087 36.2 4.8 106 455-562 72-182 (305)
182 1fc4_A 2-amino-3-ketobutyrate 40.5 1.7E+02 0.0057 29.6 11.0 96 456-561 107-212 (401)
183 4id9_A Short-chain dehydrogena 40.2 55 0.0019 32.7 7.2 98 455-565 19-126 (347)
184 3m2p_A UDP-N-acetylglucosamine 40.2 39 0.0013 33.4 6.0 99 456-564 3-108 (311)
185 1gd9_A Aspartate aminotransfer 39.6 1.1E+02 0.0037 30.8 9.4 101 454-561 86-198 (389)
186 2xbl_A Phosphoheptose isomeras 39.5 2.3E+02 0.0077 26.0 12.1 36 493-528 131-166 (198)
187 1o1y_A Conserved hypothetical 39.5 26 0.00089 34.5 4.5 86 478-564 10-101 (239)
188 3cg0_A Response regulator rece 39.4 99 0.0034 25.8 7.8 82 478-566 7-92 (140)
189 1iay_A ACC synthase 2, 1-amino 39.4 1.2E+02 0.004 31.3 9.8 102 453-561 107-226 (428)
190 3fxa_A SIS domain protein; str 39.3 1.3E+02 0.0044 28.0 9.2 37 493-529 107-143 (201)
191 3fsl_A Aromatic-amino-acid ami 39.2 2.4E+02 0.0083 28.2 12.0 100 456-561 97-211 (397)
192 1xq6_A Unknown protein; struct 39.1 1.3E+02 0.0044 28.1 9.3 106 454-565 3-133 (253)
193 2o1b_A Aminotransferase, class 38.8 1.1E+02 0.0038 31.4 9.5 100 455-561 110-219 (404)
194 1id1_A Putative potassium chan 38.6 1.4E+02 0.0048 26.4 9.0 98 455-564 3-106 (153)
195 3cvj_A Putative phosphoheptose 38.6 1.6E+02 0.0056 28.3 10.2 37 492-528 122-169 (243)
196 3ia7_A CALG4; glycosysltransfe 38.5 71 0.0024 32.2 7.8 22 547-568 115-136 (402)
197 1e5e_A MGL, methionine gamma-l 38.4 2E+02 0.0069 29.7 11.5 98 456-561 79-183 (404)
198 3e48_A Putative nucleoside-dip 38.4 41 0.0014 32.8 5.8 102 457-566 2-107 (289)
199 1hdo_A Biliverdin IX beta redu 38.4 55 0.0019 29.7 6.3 104 456-566 4-112 (206)
200 1n8p_A Cystathionine gamma-lya 38.2 84 0.0029 32.6 8.5 97 456-561 72-177 (393)
201 1ek6_A UDP-galactose 4-epimera 38.2 1.5E+02 0.0053 29.3 10.2 108 456-565 3-132 (348)
202 3t6k_A Response regulator rece 38.1 1.4E+02 0.0049 25.2 8.7 79 480-566 4-88 (136)
203 2bwn_A 5-aminolevulinate synth 38.1 3.3E+02 0.011 27.4 13.0 72 482-561 134-213 (401)
204 3e2y_A Kynurenine-oxoglutarate 37.9 1.2E+02 0.0042 30.6 9.6 100 455-561 86-205 (410)
205 3olq_A Universal stress protei 37.9 1.6E+02 0.0056 28.8 10.2 62 499-564 235-305 (319)
206 3fwk_A FMN adenylyltransferase 37.9 2.8E+02 0.0095 28.9 12.2 90 444-533 46-171 (308)
207 3gpi_A NAD-dependent epimerase 37.8 29 0.00099 33.9 4.6 50 517-566 57-110 (286)
208 1ydm_A Hypothetical protein YQ 37.6 98 0.0033 29.3 8.1 102 440-546 24-139 (187)
209 2qzj_A Two-component response 37.6 1.1E+02 0.0039 25.8 8.0 79 480-566 4-85 (136)
210 1j32_A Aspartate aminotransfer 37.5 98 0.0033 31.2 8.7 101 455-562 91-202 (388)
211 3a2b_A Serine palmitoyltransfe 37.4 2.3E+02 0.0079 28.5 11.6 96 456-561 105-208 (398)
212 3q2o_A Phosphoribosylaminoimid 37.4 9.7 0.00033 39.8 1.1 75 451-531 10-84 (389)
213 3s2u_A UDP-N-acetylglucosamine 37.4 2.1E+02 0.0071 29.3 11.3 92 455-562 180-278 (365)
214 1nri_A Hypothetical protein HI 37.3 3.4E+02 0.012 27.4 13.3 56 492-549 154-212 (306)
215 2fq6_A Cystathionine beta-lyas 37.1 70 0.0024 33.9 7.7 97 456-562 99-205 (415)
216 1lnq_A MTHK channels, potassiu 37.0 56 0.0019 33.2 6.7 90 455-563 115-209 (336)
217 2jl1_A Triphenylmethane reduct 36.9 88 0.003 30.2 7.9 102 457-565 2-107 (287)
218 1u08_A Hypothetical aminotrans 36.8 2E+02 0.0068 28.9 10.9 99 456-561 93-201 (386)
219 2ejb_A Probable aromatic acid 36.8 76 0.0026 30.5 7.2 19 470-488 20-38 (189)
220 3ec7_A Putative dehydrogenase; 36.4 2.5E+02 0.0085 28.8 11.7 113 456-572 24-154 (357)
221 3dyd_A Tyrosine aminotransfera 36.3 89 0.003 32.4 8.3 102 454-562 118-230 (427)
222 3ly1_A Putative histidinol-pho 36.2 1E+02 0.0034 30.6 8.4 97 455-561 69-178 (354)
223 3ri6_A O-acetylhomoserine sulf 36.2 1.9E+02 0.0066 30.6 11.1 97 458-562 100-203 (430)
224 3nnk_A Ureidoglycine-glyoxylat 36.2 2.4E+02 0.0082 28.3 11.4 98 456-561 65-173 (411)
225 3p9x_A Phosphoribosylglycinami 36.1 89 0.003 30.7 7.7 69 457-530 6-89 (211)
226 3uwc_A Nucleotide-sugar aminot 35.9 79 0.0027 31.6 7.6 92 455-562 54-158 (374)
227 1zh2_A KDP operon transcriptio 35.7 1.4E+02 0.0048 24.1 8.0 78 481-566 2-82 (121)
228 3eod_A Protein HNR; response r 35.7 1.4E+02 0.0048 24.6 8.1 80 479-566 6-89 (130)
229 1zgz_A Torcad operon transcrip 35.6 1.4E+02 0.0048 24.2 8.0 78 481-566 3-83 (122)
230 1yiz_A Kynurenine aminotransfe 34.4 1.7E+02 0.0057 30.0 10.0 99 456-561 103-220 (429)
231 3h2s_A Putative NADH-flavin re 34.4 60 0.002 30.1 6.0 99 457-563 2-104 (224)
232 2x4g_A Nucleoside-diphosphate- 34.2 1E+02 0.0034 30.6 8.0 103 456-565 14-126 (342)
233 3mt0_A Uncharacterized protein 33.9 2.6E+02 0.0087 27.2 10.9 61 500-564 207-276 (290)
234 1gc0_A Methionine gamma-lyase; 33.8 1.7E+02 0.0059 30.0 10.0 97 456-561 82-185 (398)
235 3rht_A (gatase1)-like protein; 33.6 27 0.00093 35.4 3.6 81 481-568 5-91 (259)
236 2zyj_A Alpha-aminodipate amino 33.5 1.1E+02 0.0038 31.0 8.4 101 455-561 92-201 (397)
237 4eu9_A Succinyl-COA:acetate co 33.5 1.8E+02 0.0063 32.0 10.6 95 446-540 18-146 (514)
238 3mz0_A Inositol 2-dehydrogenas 33.5 2.2E+02 0.0076 28.8 10.6 112 457-572 4-133 (344)
239 4adb_A Succinylornithine trans 33.5 3E+02 0.01 27.7 11.6 101 456-561 98-222 (406)
240 4ggj_A Mitochondrial cardiolip 33.4 59 0.002 30.9 5.9 55 458-513 64-119 (196)
241 1sb8_A WBPP; epimerase, 4-epim 33.3 2.2E+02 0.0074 28.5 10.4 110 454-565 26-153 (352)
242 3cog_A Cystathionine gamma-lya 33.0 1.5E+02 0.0051 30.8 9.4 97 456-561 84-187 (403)
243 2i2w_A Phosphoheptose isomeras 33.0 3.1E+02 0.011 25.7 12.5 36 493-528 146-181 (212)
244 2dgk_A GAD-beta, GADB, glutama 32.7 3.3E+02 0.011 28.3 12.1 98 457-562 106-229 (452)
245 2zay_A Response regulator rece 32.6 1.2E+02 0.004 25.7 7.2 81 478-566 6-92 (147)
246 1meo_A Phosophoribosylglycinam 32.5 95 0.0032 30.3 7.2 70 457-530 4-87 (209)
247 3auf_A Glycinamide ribonucleot 32.5 1.2E+02 0.0039 30.1 7.9 70 458-530 27-109 (229)
248 2qxy_A Response regulator; reg 32.3 98 0.0034 26.1 6.6 78 480-566 4-85 (142)
249 3asa_A LL-diaminopimelate amin 32.2 1.1E+02 0.0038 31.2 8.1 100 454-561 95-201 (400)
250 3nmy_A Xometc, cystathionine g 32.1 1.5E+02 0.0053 30.9 9.4 97 456-562 84-188 (400)
251 1cs1_A CGS, protein (cystathio 32.1 3.4E+02 0.011 27.4 11.8 97 456-561 69-172 (386)
252 1elu_A L-cysteine/L-cystine C- 32.1 3.8E+02 0.013 26.5 12.7 98 456-561 78-193 (390)
253 1o4s_A Aspartate aminotransfer 32.0 1.9E+02 0.0065 29.3 9.9 101 454-561 101-212 (389)
254 3ez1_A Aminotransferase MOCR f 31.9 1.2E+02 0.0041 31.0 8.4 105 453-561 86-212 (423)
255 1tt5_A APPBP1, amyloid protein 31.9 3.6E+02 0.012 29.8 12.7 108 444-562 22-155 (531)
256 1mio_B Nitrogenase molybdenum 31.9 5E+02 0.017 27.8 14.8 94 454-563 311-410 (458)
257 1byr_A Protein (endonuclease); 31.7 1.1E+02 0.0038 27.0 7.1 54 458-511 32-87 (155)
258 2zcu_A Uncharacterized oxidore 31.4 1.2E+02 0.004 29.2 7.8 98 458-564 2-103 (286)
259 3st7_A Capsular polysaccharide 31.3 1E+02 0.0034 31.3 7.6 44 515-558 39-86 (369)
260 3hvy_A Cystathionine beta-lyas 31.3 89 0.003 33.5 7.4 96 460-562 98-218 (427)
261 3aow_A Putative uncharacterize 31.1 1.5E+02 0.005 31.3 9.0 102 454-561 140-255 (448)
262 1mvo_A PHOP response regulator 31.0 2.2E+02 0.0074 23.6 8.6 78 481-566 4-85 (136)
263 2rjn_A Response regulator rece 30.9 1.4E+02 0.0048 25.6 7.5 80 479-566 6-89 (154)
264 3rq1_A Aminotransferase class 30.9 1.9E+02 0.0066 29.4 9.7 100 456-561 104-224 (418)
265 1qkk_A DCTD, C4-dicarboxylate 30.8 1.3E+02 0.0043 25.9 7.2 79 480-566 3-85 (155)
266 3rui_A Ubiquitin-like modifier 30.7 4.9E+02 0.017 27.3 13.2 109 448-569 28-175 (340)
267 1bw0_A TAT, protein (tyrosine 30.6 2.2E+02 0.0076 28.9 10.1 101 454-561 104-215 (416)
268 3gl9_A Response regulator; bet 30.6 1.9E+02 0.0064 23.9 8.0 77 481-565 3-85 (122)
269 3nhm_A Response regulator; pro 30.5 2E+02 0.0069 23.6 8.3 56 454-514 26-86 (133)
270 4g65_A TRK system potassium up 30.3 2.3E+02 0.0078 30.6 10.5 111 448-562 202-331 (461)
271 3i16_A Aluminum resistance pro 29.9 1.1E+02 0.0038 32.7 7.9 97 460-562 97-218 (427)
272 4dqv_A Probable peptide synthe 29.9 1.7E+02 0.0057 31.3 9.3 112 454-565 72-214 (478)
273 3nbm_A PTS system, lactose-spe 29.7 23 0.0008 31.2 2.1 54 501-563 30-85 (108)
274 3trj_A Phosphoheptose isomeras 29.4 3.6E+02 0.012 25.3 11.0 36 493-528 129-167 (201)
275 7aat_A Aspartate aminotransfer 29.3 2.3E+02 0.008 28.5 10.0 55 454-512 94-151 (401)
276 2wsi_A FAD synthetase; transfe 29.1 3.7E+02 0.013 27.4 11.4 90 444-533 41-168 (306)
277 3ew7_A LMO0794 protein; Q8Y8U8 28.9 95 0.0032 28.5 6.4 98 457-564 2-102 (221)
278 1smk_A Malate dehydrogenase, g 28.9 2E+02 0.0069 29.4 9.4 100 456-558 9-118 (326)
279 2r5f_A Transcriptional regulat 28.9 1.2E+02 0.0041 30.3 7.4 99 445-545 48-174 (264)
280 1e6u_A GDP-fucose synthetase; 28.7 1.2E+02 0.0041 29.8 7.4 26 541-566 83-108 (321)
281 1tk9_A Phosphoheptose isomeras 28.7 3.3E+02 0.011 24.6 11.3 38 491-528 123-160 (188)
282 3av3_A Phosphoribosylglycinami 28.6 1.5E+02 0.0051 28.8 7.9 71 457-530 7-90 (212)
283 2j48_A Two-component sensor ki 28.6 1.6E+02 0.0056 23.2 7.1 77 482-566 3-85 (119)
284 2z1d_A Hydrogenase expression/ 28.5 82 0.0028 33.7 6.3 50 510-563 178-227 (372)
285 2r2n_A Kynurenine/alpha-aminoa 28.3 3E+02 0.01 28.2 10.8 51 456-512 110-160 (425)
286 3m6m_D Sensory/regulatory prot 28.2 1.1E+02 0.0038 26.2 6.3 80 479-566 13-100 (143)
287 3hzh_A Chemotaxis response reg 28.1 1.5E+02 0.0052 25.7 7.3 81 478-566 34-121 (157)
288 3tqx_A 2-amino-3-ketobutyrate 27.7 2.9E+02 0.0098 27.6 10.2 95 457-561 106-210 (399)
289 2b4a_A BH3024; flavodoxin-like 27.7 1.6E+02 0.0056 24.5 7.3 78 478-563 13-95 (138)
290 3frk_A QDTB; aminotransferase, 27.7 87 0.003 31.5 6.3 94 456-561 53-156 (373)
291 3ke3_A Putative serine-pyruvat 27.7 4.8E+02 0.017 26.2 13.2 99 457-562 54-174 (379)
292 2o0m_A Transcriptional regulat 27.7 74 0.0025 33.0 5.8 91 442-533 125-246 (345)
293 3rqi_A Response regulator prot 27.7 1.8E+02 0.0061 26.2 7.9 79 480-566 7-89 (184)
294 3oy2_A Glycosyltransferase B73 27.6 1E+02 0.0035 31.2 6.9 98 455-562 184-303 (413)
295 3h1g_A Chemotaxis protein CHEY 27.4 1.8E+02 0.0062 24.1 7.4 79 480-566 5-91 (129)
296 3ele_A Amino transferase; RER0 27.3 2.1E+02 0.0072 28.8 9.2 102 454-561 99-216 (398)
297 4hvk_A Probable cysteine desul 27.0 4.5E+02 0.015 25.6 14.9 98 456-561 62-172 (382)
298 1ja9_A 4HNR, 1,3,6,8-tetrahydr 27.0 1.6E+02 0.0055 28.1 7.9 99 454-555 20-144 (274)
299 1pff_A Methionine gamma-lyase; 27.0 1.9E+02 0.0064 28.4 8.5 98 456-561 15-119 (331)
300 3gk7_A 4-hydroxybutyrate COA-t 26.9 1.1E+02 0.0039 33.3 7.3 95 446-541 15-134 (448)
301 2o0r_A RV0858C (N-succinyldiam 26.8 2.3E+02 0.0079 28.8 9.5 99 456-561 88-198 (411)
302 3lou_A Formyltetrahydrofolate 26.8 1.6E+02 0.0055 30.2 8.1 72 457-534 99-184 (292)
303 3jyo_A Quinate/shikimate dehyd 26.7 2.6E+02 0.0088 28.2 9.6 72 454-527 126-199 (283)
304 1orr_A CDP-tyvelose-2-epimeras 26.5 66 0.0023 31.9 5.1 105 457-564 3-124 (347)
305 3kcn_A Adenylate cyclase homol 26.5 59 0.002 28.1 4.2 57 454-514 26-85 (151)
306 3ilh_A Two component response 26.3 2.7E+02 0.0094 23.1 8.4 82 477-566 6-102 (146)
307 3f0h_A Aminotransferase; RER07 26.3 2.5E+02 0.0084 27.9 9.4 99 456-562 72-180 (376)
308 3orq_A N5-carboxyaminoimidazol 26.2 46 0.0016 34.7 4.0 71 452-532 9-83 (377)
309 2hq1_A Glucose/ribitol dehydro 26.2 3.3E+02 0.011 25.4 9.8 76 454-531 4-92 (247)
310 2ywr_A Phosphoribosylglycinami 25.9 2.2E+02 0.0074 27.7 8.6 74 458-534 6-93 (216)
311 3jvi_A Protein tyrosine phosph 25.9 73 0.0025 29.6 4.9 73 457-529 6-90 (161)
312 1qg8_A Protein (spore coat pol 25.8 1.6E+02 0.0055 27.6 7.5 55 457-512 6-61 (255)
313 1v4v_A UDP-N-acetylglucosamine 25.7 4.5E+02 0.015 26.0 11.2 69 477-562 227-299 (376)
314 1gy8_A UDP-galactose 4-epimera 25.7 2.3E+02 0.0079 28.7 9.2 108 456-565 3-144 (397)
315 3b46_A Aminotransferase BNA3; 25.6 1.5E+02 0.0053 30.9 8.0 99 456-561 120-239 (447)
316 3r0j_A Possible two component 25.6 2.2E+02 0.0075 26.9 8.5 80 479-566 22-105 (250)
317 2jis_A Cysteine sulfinic acid 25.6 5.3E+02 0.018 27.4 12.4 104 454-563 165-296 (515)
318 3g7q_A Valine-pyruvate aminotr 25.6 77 0.0026 32.3 5.5 107 453-562 97-219 (417)
319 1bs0_A Protein (8-amino-7-oxon 25.5 3.3E+02 0.011 27.1 10.3 97 456-561 101-203 (384)
320 1vl0_A DTDP-4-dehydrorhamnose 25.5 1.1E+02 0.0038 29.6 6.4 24 540-563 89-112 (292)
321 3gt7_A Sensor protein; structu 25.4 2E+02 0.0069 24.8 7.6 80 479-566 6-91 (154)
322 3eh7_A 4-hydroxybutyrate COA-t 25.2 75 0.0026 34.5 5.5 95 446-541 19-138 (434)
323 3tcm_A Alanine aminotransferas 25.2 3.5E+02 0.012 28.8 10.9 103 453-561 156-275 (500)
324 3hv2_A Response regulator/HD d 25.1 1.4E+02 0.0048 25.6 6.4 80 479-566 13-96 (153)
325 4dad_A Putative pilus assembly 25.0 62 0.0021 27.6 4.0 80 479-566 19-105 (146)
326 2oqr_A Sensory transduction pr 24.9 2.4E+02 0.0081 26.0 8.4 78 481-566 5-85 (230)
327 3mm4_A Histidine kinase homolo 24.8 2.5E+02 0.0085 25.9 8.5 78 479-564 60-159 (206)
328 3kht_A Response regulator; PSI 24.8 1.9E+02 0.0064 24.4 7.1 80 479-566 4-91 (144)
329 2pb2_A Acetylornithine/succiny 24.8 4.5E+02 0.016 27.0 11.4 102 455-561 115-240 (420)
330 3ppl_A Aspartate aminotransfer 24.7 3.1E+02 0.011 28.0 10.1 99 452-561 93-220 (427)
331 1g0o_A Trihydroxynaphthalene r 24.7 2.2E+02 0.0075 27.8 8.5 99 454-555 28-152 (283)
332 3sc6_A DTDP-4-dehydrorhamnose 24.6 57 0.0019 31.6 4.1 25 540-564 82-106 (287)
333 2qr3_A Two-component system re 24.6 1.7E+02 0.0057 24.3 6.7 84 480-566 3-90 (140)
334 1xi9_A Putative transaminase; 24.6 3.5E+02 0.012 27.4 10.3 100 455-561 102-212 (406)
335 3tsa_A SPNG, NDP-rhamnosyltran 24.6 1.7E+02 0.0057 29.5 7.8 19 546-564 125-143 (391)
336 1fg7_A Histidinol phosphate am 24.6 1.5E+02 0.0051 29.8 7.4 53 455-512 76-128 (356)
337 3ruy_A Ornithine aminotransfer 24.6 3.5E+02 0.012 27.1 10.2 105 455-562 94-222 (392)
338 3qp9_A Type I polyketide synth 24.5 2.1E+02 0.0073 31.4 9.1 113 451-565 247-402 (525)
339 2cy8_A D-phgat, D-phenylglycin 24.4 2.4E+02 0.0082 29.3 9.2 102 456-561 115-240 (453)
340 1qo0_D AMIR; binding protein, 24.4 49 0.0017 30.2 3.4 78 479-566 11-89 (196)
341 4gek_A TRNA (CMO5U34)-methyltr 24.4 1.8E+02 0.0062 28.7 7.8 84 441-527 57-144 (261)
342 3ffh_A Histidinol-phosphate am 24.4 1.6E+02 0.0055 29.3 7.5 97 455-561 85-192 (363)
343 3osu_A 3-oxoacyl-[acyl-carrier 24.2 1.6E+02 0.0055 28.1 7.3 105 455-562 4-138 (246)
344 3i42_A Response regulator rece 24.1 2.1E+02 0.0073 23.3 7.2 79 480-566 3-87 (127)
345 1v2d_A Glutamine aminotransfer 24.1 3E+02 0.01 27.5 9.5 100 455-561 79-190 (381)
346 4gud_A Imidazole glycerol phos 23.8 46 0.0016 31.5 3.1 74 482-565 4-81 (211)
347 2fnu_A Aminotransferase; prote 23.8 1.4E+02 0.0049 29.6 7.0 94 456-561 49-153 (375)
348 3f6p_A Transcriptional regulat 23.8 2.3E+02 0.0078 23.2 7.3 77 482-566 4-83 (120)
349 3sho_A Transcriptional regulat 23.7 4.1E+02 0.014 24.0 11.3 90 445-565 29-123 (187)
350 4fzr_A SSFS6; structural genom 23.7 1.3E+02 0.0043 30.7 6.7 36 469-512 34-69 (398)
351 1omo_A Alanine dehydrogenase; 23.6 3.5E+02 0.012 27.5 10.1 74 453-531 123-196 (322)
352 1f0k_A MURG, UDP-N-acetylgluco 23.6 4.2E+02 0.014 26.0 10.5 66 480-562 212-280 (364)
353 2jba_A Phosphate regulon trans 23.5 2E+02 0.0069 23.3 6.9 78 481-566 3-86 (127)
354 3enk_A UDP-glucose 4-epimerase 23.5 2.7E+02 0.0094 27.3 9.0 109 454-565 4-129 (341)
355 4gsl_A Ubiquitin-like modifier 23.5 6.7E+02 0.023 28.5 13.0 107 446-563 318-463 (615)
356 3l4e_A Uncharacterized peptida 23.4 98 0.0033 29.9 5.5 106 458-563 5-120 (206)
357 1mb3_A Cell division response 23.4 2.9E+02 0.01 22.2 8.3 76 482-565 3-84 (124)
358 1s8n_A Putative antiterminator 23.4 2.8E+02 0.0094 25.2 8.4 80 479-566 12-95 (205)
359 3ip3_A Oxidoreductase, putativ 23.3 1.4E+02 0.0047 30.3 6.8 113 457-572 4-135 (337)
360 3otg_A CALG1; calicheamicin, T 23.2 2.5E+02 0.0087 28.3 8.9 19 548-566 143-161 (412)
361 3pdi_A Nitrogenase MOFE cofact 23.2 5.6E+02 0.019 27.8 12.1 102 440-563 319-426 (483)
362 3vps_A TUNA, NAD-dependent epi 23.1 87 0.003 30.6 5.1 26 541-566 95-120 (321)
363 2ydy_A Methionine adenosyltran 22.9 2.1E+02 0.0071 27.9 7.9 98 455-564 2-110 (315)
364 1yio_A Response regulatory pro 22.9 2.5E+02 0.0086 25.4 8.0 79 480-566 4-86 (208)
365 3nzo_A UDP-N-acetylglucosamine 22.8 2.5E+02 0.0086 29.2 8.9 109 455-565 35-165 (399)
366 4b4o_A Epimerase family protei 22.7 1.2E+02 0.004 29.7 6.0 19 541-559 82-100 (298)
367 1iz0_A Quinone oxidoreductase; 22.7 2.7E+02 0.0092 27.4 8.8 53 452-511 123-176 (302)
368 3rss_A Putative uncharacterize 22.6 6E+02 0.021 27.9 12.2 115 439-561 34-157 (502)
369 3t18_A Aminotransferase class 22.6 3.5E+02 0.012 27.4 9.8 100 456-561 103-223 (413)
370 3n0v_A Formyltetrahydrofolate 22.5 2E+02 0.0067 29.4 7.8 68 457-530 94-174 (286)
371 1jbe_A Chemotaxis protein CHEY 22.5 3E+02 0.01 22.3 7.9 80 478-565 2-88 (128)
372 3vp6_A Glutamate decarboxylase 22.4 6.4E+02 0.022 27.0 12.4 101 455-562 155-284 (511)
373 1wx0_A Transaldolase; structur 22.3 2.8E+02 0.0097 27.3 8.6 48 464-514 69-119 (223)
374 3grc_A Sensor protein, kinase; 22.3 2.7E+02 0.0094 23.1 7.6 80 479-566 5-90 (140)
375 3lte_A Response regulator; str 22.2 3.2E+02 0.011 22.3 8.4 52 479-531 5-59 (132)
376 2pl1_A Transcriptional regulat 22.2 2.6E+02 0.009 22.4 7.3 76 482-565 2-81 (121)
377 3awd_A GOX2181, putative polyo 22.1 4.9E+02 0.017 24.4 11.1 107 454-563 12-148 (260)
378 3e9k_A Kynureninase; kynurenin 22.0 2.8E+02 0.0096 28.9 9.1 101 455-561 129-249 (465)
379 3cnb_A DNA-binding response re 22.0 2.2E+02 0.0074 23.6 6.9 80 479-566 7-94 (143)
380 1pjq_A CYSG, siroheme synthase 21.9 1.6E+02 0.0053 31.8 7.3 94 454-564 11-105 (457)
381 2iss_D Glutamine amidotransfer 21.8 1E+02 0.0036 29.2 5.3 81 478-567 18-102 (208)
382 2ri0_A Glucosamine-6-phosphate 21.8 2.3E+02 0.008 27.1 7.9 89 449-541 22-134 (234)
383 1to6_A Glycerate kinase; glyce 21.8 39 0.0013 36.2 2.4 61 492-567 260-320 (371)
384 3op7_A Aminotransferase class 21.8 2E+02 0.0068 28.7 7.6 100 455-561 82-192 (375)
385 1qv9_A F420-dependent methylen 21.7 2.5E+02 0.0085 28.6 8.0 60 474-534 60-125 (283)
386 1iug_A Putative aspartate amin 21.7 2.3E+02 0.0079 27.7 8.0 99 455-561 52-158 (352)
387 3kr9_A SAM-dependent methyltra 21.6 1.5E+02 0.0052 29.1 6.5 77 448-528 9-90 (225)
388 3lec_A NADB-rossmann superfami 21.5 1.5E+02 0.0052 29.3 6.5 104 448-567 15-128 (230)
389 3cg4_A Response regulator rece 21.5 2.5E+02 0.0087 23.3 7.3 79 479-565 6-90 (142)
390 3a9z_A Selenocysteine lyase; P 21.4 6.4E+02 0.022 25.5 12.5 20 455-474 79-98 (432)
391 3ps9_A TRNA 5-methylaminomethy 21.4 1.3E+02 0.0045 33.7 6.7 65 447-513 204-303 (676)
392 3j20_M 30S ribosomal protein S 21.3 1.6E+02 0.0054 27.2 6.1 49 466-514 63-118 (137)
393 2a9v_A GMP synthase; structura 21.3 89 0.0031 30.0 4.7 82 479-564 12-93 (212)
394 2w8t_A SPT, serine palmitoyltr 21.3 5.9E+02 0.02 26.0 11.4 95 456-561 126-229 (427)
395 1b93_A Protein (methylglyoxal 21.3 4.2E+02 0.014 24.7 9.1 103 455-568 12-125 (152)
396 3oh8_A Nucleoside-diphosphate 21.2 1.1E+02 0.0038 33.1 6.0 97 455-565 147-254 (516)
397 1vef_A Acetylornithine/acetyl- 21.2 5E+02 0.017 26.0 10.6 104 455-561 105-224 (395)
398 3jzl_A Putative cystathionine 21.2 1.8E+02 0.0062 30.7 7.5 94 462-562 85-201 (409)
399 5nul_A Flavodoxin; electron tr 21.2 1.4E+02 0.0049 25.8 5.7 65 497-563 19-86 (138)
400 3l5o_A Uncharacterized protein 21.1 2.2E+02 0.0075 29.0 7.7 87 454-571 140-227 (270)
401 3two_A Mannitol dehydrogenase; 21.1 1.5E+02 0.0051 30.1 6.6 55 451-513 173-227 (348)
402 3ffr_A Phosphoserine aminotran 21.1 1.8E+02 0.0062 28.5 7.1 96 456-562 63-167 (362)
403 3r5x_A D-alanine--D-alanine li 21.0 81 0.0028 31.2 4.5 12 521-532 54-65 (307)
404 3fbg_A Putative arginate lyase 21.0 2.8E+02 0.0097 28.0 8.7 52 454-512 150-202 (346)
405 3h5n_A MCCB protein; ubiquitin 21.0 4.8E+02 0.016 27.1 10.6 104 449-563 113-241 (353)
406 1k68_A Phytochrome response re 20.9 2.7E+02 0.0093 22.8 7.2 78 481-566 3-95 (140)
407 3la8_A SMU.1229, putative puri 20.7 2.5E+02 0.0086 29.1 8.2 74 459-564 188-264 (303)
408 2hqr_A Putative transcriptiona 20.7 2.4E+02 0.0082 25.9 7.5 73 482-566 2-78 (223)
409 1q77_A Hypothetical protein AQ 20.7 1.3E+02 0.0046 25.5 5.3 29 522-562 109-137 (138)
410 3mc6_A Sphingosine-1-phosphate 20.6 2.1E+02 0.0072 30.2 7.9 101 455-562 127-242 (497)
411 3jte_A Response regulator rece 20.6 3.7E+02 0.013 22.3 8.3 78 479-564 2-85 (143)
412 3lab_A Putative KDPG (2-keto-3 20.6 2.2E+02 0.0074 28.2 7.3 67 485-561 18-90 (217)
413 3euc_A Histidinol-phosphate am 20.5 2.9E+02 0.0099 27.4 8.5 100 455-561 86-197 (367)
414 2r85_A PURP protein PF1517; AT 20.5 1.6E+02 0.0054 29.2 6.5 7 553-559 82-88 (334)
415 3uog_A Alcohol dehydrogenase; 20.5 3.4E+02 0.012 27.7 9.2 53 451-511 186-239 (363)
416 3b1d_A Betac-S lyase; HET: PLP 25.9 21 0.00073 36.5 0.0 22 455-476 90-111 (392)
417 3d3u_A 4-hydroxybutyrate COA-t 20.2 92 0.0032 33.6 5.0 96 445-541 14-135 (439)
418 3ab8_A Putative uncharacterize 20.2 2.6E+02 0.009 26.6 7.9 64 501-567 83-152 (268)
419 3mje_A AMPHB; rossmann fold, o 20.2 3.9E+02 0.013 29.2 10.0 109 456-565 240-375 (496)
420 3ehe_A UDP-glucose 4-epimerase 20.2 1E+02 0.0035 30.3 5.0 99 457-565 3-114 (313)
421 1qdl_B Protein (anthranilate s 20.1 3.4E+02 0.012 25.2 8.5 75 483-564 4-85 (195)
422 4dzr_A Protein-(glutamine-N5) 20.1 1.2E+02 0.004 27.6 5.0 72 453-528 29-107 (215)
423 1ax4_A Tryptophanase; tryptoph 20.0 3.7E+02 0.013 27.7 9.5 102 455-562 92-223 (467)
No 1
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=3.5e-71 Score=593.40 Aligned_cols=321 Identities=21% Similarity=0.352 Sum_probs=285.7
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.++|.|| +.||++++|+.|.+++++|.+|+.| +|+| +.++|+++++++++.. +
T Consensus 36 ~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~----~--- 94 (374)
T 2yvk_A 36 ETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAI--------------GITAAFGLALAAKDIE----T--- 94 (374)
T ss_dssp SSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHTTCC----C---
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHH--------------HHHHHHHHHHHHHhcc----C---
Confidence 3479999 9999999999999999999999999 6998 4488899988876531 1
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
...++|.+.|+.++++|.++|||++||+|+++++++.+.+. .+.+++|+.+++.+++|++|. ..+++.|+++|++
T Consensus 95 -~~~~~l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~---~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~ 169 (374)
T 2yvk_A 95 -DNVTEFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA---ISVNEAKTNLVHEAIQIQVED-EETCRLIGQNALQ 169 (374)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHGG
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 23578999999999999999999999999999999888643 357889999999999999985 5699999999999
Q ss_pred hccCCCEEEeeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhh
Q 006164 451 KIRDGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~S--------saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~ 521 (658)
+|++|++||||||| .++.++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|+
T Consensus 170 ~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~ 249 (374)
T 2yvk_A 170 LFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMK 249 (374)
T ss_dssp GCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHH
T ss_pred HhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhh
Confidence 99999999999976 356699999999999999999999999999874 799999999999999999999999
Q ss_pred h--ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC
Q 006164 522 E--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599 (658)
Q Consensus 522 ~--Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~ 599 (658)
+ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.+ .++ +||+|||+|+..+.|.
T Consensus 250 ~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g----~~i-~iEer~~~Ev~~~~g~ 324 (374)
T 2yvk_A 250 EKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCG----ADI-PIEERDPEEVRQISGV 324 (374)
T ss_dssp HTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSG----GGS-CCCBCCTHHHHEETTE
T ss_pred hcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCc----ccc-ccccCCHHHhcccCCc
Confidence 8 99999999999999999999999999999999999999999999999988754 456 8899999999876542
Q ss_pred ccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCCC
Q 006164 600 EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQL 656 (658)
Q Consensus 600 ~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey~~~~~ 656 (658)
+..+++++++||+|||||++|||+||||.|+++|++...+.+-|..+++
T Consensus 325 --------~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~P~~~~~l~~~~~~~~~ 373 (374)
T 2yvk_A 325 --------RTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGNYEEEIEQLFKGEKV 373 (374)
T ss_dssp --------ECSCTTCCBCCBSEEEECGGGCSEEEETTEEECSCHHHHHHHHTCC---
T ss_pred --------eecCCCcceeCcceeccCHHHCCEEeccCCccCcchHHHHHHHhhhccC
Confidence 3567899999999999999999999999999999988877766665543
No 2
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=1.3e-70 Score=583.13 Aligned_cols=312 Identities=24% Similarity=0.379 Sum_probs=271.3
Q ss_pred ceecccCcchhhhhhcccchhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 006164 309 YEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFL 388 (658)
Q Consensus 309 ~~~~~~l~~~~~~~~ai~~mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L 388 (658)
-.+|+.|.++++.+.+|+.| +++|+.+.+++.+.+|..++..+.+. ...+|.+.|+.++++|
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m--------------~VrGApai~iaaa~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L 75 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNM--------------EIRGAGKIARSAAYALQLQAEKSKAT----NVDEFWKEMKQAAKIL 75 (338)
T ss_dssp -----CCSHHHHHHHHHHTC--------------SSCSHHHHHHHHHHHHHHHHHHCCCC----SHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhC--------------cEeCcHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHH
Confidence 34567777777777666655 45555555666666666666665542 3578999999999999
Q ss_pred HhcCCccccHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHH
Q 006164 389 IDCRPLSVSMGNAIRFLKSQIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAV 467 (658)
Q Consensus 389 ~~aRPtsVsmgNAIr~lk~~I~~-~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV 467 (658)
.++|||++||+|+++++++.+.. .....+.+++|+.+++.+++|++|. ..+++.|+++|+++|++|++|||||||.+|
T Consensus 76 ~~aRPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILTh~~S~tv 154 (338)
T 3a11_A 76 FETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNS-EKALERIGEFGAKRIEDGDVIMTHCHSKAA 154 (338)
T ss_dssp HTTCTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEeCCcHHH
Confidence 99999999999999999998874 1223467889999999999999985 568999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHH
Q 006164 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (658)
Q Consensus 468 ~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~ 547 (658)
+++|+.|+++|++|+|||+||||++||+.++++|.+.||+||||+|||++|+|++||+||||||+|++||+++||+|||+
T Consensus 155 l~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~ 234 (338)
T 3a11_A 155 ISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTAL 234 (338)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHH
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccccccCCCcC-CCCceeccccccccCC
Q 006164 548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDK-SENLQLLNLIYDATPS 626 (658)
Q Consensus 548 lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~-~~~l~v~Np~FDvTPp 626 (658)
+|++||+||||||||||+|||++.++.+ .++ +||+|||+|++.. |. ... +++++++||+||+||+
T Consensus 235 lAl~Ak~~~vPfyV~a~~~k~d~~~~~g----~~i-~iE~r~~~ev~~~-g~--------~~~w~~~v~v~NPaFDvTP~ 300 (338)
T 3a11_A 235 IALTAKEHRVWTMIAAETYKFHPETMLG----QLV-EIEMRDPTEVIPE-DE--------LKTWPKNIEVWNPAFDVTPP 300 (338)
T ss_dssp HHHHHHHTTCEEEEECCGGGBCSCCSSS----SCC-CCCBCCGGGTSCH-HH--------HTTSCTTEEECCBSEEEECG
T ss_pred HHHHHHHcCCCEEEecccceecccCCCC----ccc-ccccCCHHHcccc-cc--------cccCCCCceecCcceeccCH
Confidence 9999999999999999999999988754 455 7888999999865 31 123 6789999999999999
Q ss_pred CCccEEEeCCCCCCCCCHHHHHHHhhc
Q 006164 627 DYVSLIITDYGMIPPTSVPVIVREYGR 653 (658)
Q Consensus 627 eLIt~IITE~Gil~PssV~~ilrey~~ 653 (658)
+|||+||||.|+++|++|+.+|++||.
T Consensus 301 ~lIt~iITE~Gv~~p~~v~~~L~e~y~ 327 (338)
T 3a11_A 301 EYVDVIITERGIIPPYAAIDILREEFG 327 (338)
T ss_dssp GGCSEEEETTEEECGGGHHHHHHHHHC
T ss_pred HHcCEEecCCCccCchhHHHHHHHHhC
Confidence 999999999999999999999999986
No 3
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=1e-69 Score=583.74 Aligned_cols=315 Identities=20% Similarity=0.310 Sum_probs=283.0
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.+.|.|| +.||+++.|+.|.++++++.+|+.| +|+| |.++|++|+++++++.....|.
T Consensus 25 ~~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~~~~~~~-- 88 (383)
T 2a0u_A 25 PGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAI--------------AVSAALGIAVATQRKAANGELK-- 88 (383)
T ss_dssp TTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHHSSCC--
T ss_pred CCEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHH--------------HHHHHHHHHHHHHhhcccccCC--
Confidence 3479999 9999999999999999999999999 6999 4588999999999987654331
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
..++|.+.|+..+++|.++|||++||+|++++|++.+.+...+.+.+++|+.+++.+++|++|. ..+++.|+++|++
T Consensus 89 --~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~-~~~~~~I~~~g~~ 165 (383)
T 2a0u_A 89 --SGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND-VAFNEGIMRHGAA 165 (383)
T ss_dssp --CHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998764333467889999999999999995 4799999999999
Q ss_pred hcc--------CCCEEEeeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEcc
Q 006164 451 KIR--------DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 451 ~I~--------dgdvILT~g~S--------saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vTlI~D 513 (658)
+|. +|++||||||| .+++++|+.|+++|++|+|||+||||++||.+ ++++|.+.||+||||+|
T Consensus 166 ~I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~D 245 (383)
T 2a0u_A 166 HILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICD 245 (383)
T ss_dssp HHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECG
T ss_pred HhhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEeh
Confidence 999 99999999987 46679999999999999999999999999986 57999999999999999
Q ss_pred hHHHHHhhh--ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCC
Q 006164 514 NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPD 591 (658)
Q Consensus 514 sAv~~iM~~--Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ 591 (658)
||++|+|++ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.+ .++ +||+|||+
T Consensus 246 sa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g----~~i-~iEer~~~ 320 (383)
T 2a0u_A 246 GAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASG----NHV-EIEEREPT 320 (383)
T ss_dssp GGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSG----GGS-CCCBCCTH
T ss_pred hHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCc----ccc-ccccCCHH
Confidence 999999998 99999999999999999999999999999999999999999999999988753 556 88999999
Q ss_pred Ccccc--CCCccccccCCCcCCCC--ceeccccccccCCCCcc-EEEeCCCCCCCCC
Q 006164 592 SISKV--PGREDINHLDGWDKSEN--LQLLNLIYDATPSDYVS-LIITDYGMIPPTS 643 (658)
Q Consensus 592 ev~~~--~g~~~v~~~~~~~~~~~--l~v~Np~FDvTPpeLIt-~IITE~Gil~Pss 643 (658)
|++.+ .|. ...+++ ++++||+|||||++||| +||||.|+++|+.
T Consensus 321 Ev~~~~~~g~--------~~a~~~~~v~v~NPaFDvTP~~lIt~~iITE~Gv~~p~~ 369 (383)
T 2a0u_A 321 EITTNLVTKQ--------RVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAA 369 (383)
T ss_dssp HHHBCTTTCC--------BCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCS
T ss_pred HhcccccCCc--------eecCCCCceeeecccccccChHHCCcEEEccCCccCCcc
Confidence 99876 342 124566 99999999999999999 9999999998765
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=3.6e-70 Score=581.13 Aligned_cols=311 Identities=21% Similarity=0.320 Sum_probs=279.1
Q ss_pred cCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCc
Q 006164 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~ 370 (658)
.+.|.|| +.||++++|..|.++++.+.+|++| +|+| +.++|++|++++++... .
T Consensus 14 ~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~i--------------g~aaa~~l~l~~~~~~~--~---- 73 (347)
T 1t9k_A 14 GNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAI--------------GVAAAFGYVLGLRDYKT--G---- 73 (347)
T ss_dssp SSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHH--------------HHHHHHHHHHHHHTCCS--S----
T ss_pred CCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhccc--C----
Confidence 3479999 9999999999999999999999999 6998 44889999998876321 0
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
... +.|+.++++|.++|||++||+|+++++++.+.+.. +.+++|+.+++.+++|++|. ..+++.|+++|++
T Consensus 74 --~~~---~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~~~---~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~ 144 (347)
T 1t9k_A 74 --SLT---DWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALKMAYED-IEVNKAIGKNGAQ 144 (347)
T ss_dssp --CHH---HHHHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred --CHH---HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 112 44999999999999999999999999999987542 45679999999999999985 5689999999999
Q ss_pred hccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEcchHHHHHhh
Q 006164 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vTlI~DsAv~~iM~ 521 (658)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+ ++|+|.+.||+||||+|||++|+|+
T Consensus 145 ~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 224 (347)
T 1t9k_A 145 LIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMK 224 (347)
T ss_dssp TSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHH
T ss_pred HhCCCCEEEEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhh
Confidence 999999999999998 8889999999999999999999999999987 5799999999999999999999998
Q ss_pred h--ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC
Q 006164 522 E--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599 (658)
Q Consensus 522 ~--Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~ 599 (658)
+ ||+||||||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+ .++ +||+|||+|+..+.|.
T Consensus 225 ~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g----~~i-~iE~r~~~ev~~~~g~ 299 (347)
T 1t9k_A 225 RGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSG----EEI-PIEERRPEEVTHCGGN 299 (347)
T ss_dssp TTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSG----GGS-CCCBCCTHHHHEETTE
T ss_pred cCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCc----ccc-ccccCChHhccccCCe
Confidence 7 99999999999999999999999999999999999999999999999987753 456 8899999999876442
Q ss_pred ccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHH
Q 006164 600 EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVR 649 (658)
Q Consensus 600 ~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilr 649 (658)
+..+++++++||+||+||++|||+||||.|+++|++...+.+
T Consensus 300 --------~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~~~~l~~ 341 (347)
T 1t9k_A 300 --------RIAPEGVKVLNPAFDVTENTLITAIITEKGVIRPPFEENIKK 341 (347)
T ss_dssp --------ECSCTTCEECCBSEEEECGGGCSEEEETTEEECSSHHHHHHH
T ss_pred --------eccCCCccccCcccccCCHHHCCEEeccCCccCcchHHHHHH
Confidence 356789999999999999999999999999999999877664
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=2.1e-69 Score=575.92 Aligned_cols=311 Identities=23% Similarity=0.342 Sum_probs=278.8
Q ss_pred cccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccch
Q 006164 300 VELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTL 373 (658)
Q Consensus 300 v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~ 373 (658)
|.|| +.||++++|+.|.++++++.+|+.| +|+| +.++|+++++++++. .+ ..
T Consensus 12 l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai--------------~iaaa~~l~l~~~~~----~~----~~ 69 (351)
T 1t5o_A 12 LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPAL--------------EAAGAYGIALAARER----EF----AD 69 (351)
T ss_dssp EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHTTSS----CC----SC
T ss_pred EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHH--------------HHHHHHHHHHHHHhc----cC----CC
Confidence 8899 9999999999999999999999999 6998 347788888877642 11 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006164 374 SRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR 453 (658)
Q Consensus 374 ~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~ 453 (658)
..+|.+.|+.++++|.++|||++||+|+++++++.+.+ ..+.+++|+.+++.+++|++|. ..+++.|+++|+++|+
T Consensus 70 ~~~l~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~ 145 (351)
T 1t5o_A 70 VDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK---GESVEEVKELALREAEKLAEED-VERNRKMGEYGAELLE 145 (351)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999998865 2467889999999999999985 5689999999999999
Q ss_pred CCCEEEeeCCh--------HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhhh--
Q 006164 454 DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE-- 522 (658)
Q Consensus 454 dgdvILT~g~S--------saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~-- 522 (658)
+|++||||||| +++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|+|++
T Consensus 146 ~g~~ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~ 225 (351)
T 1t5o_A 146 DGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGM 225 (351)
T ss_dssp TTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTC
T ss_pred CCCEEEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCC
Confidence 99999999975 356699999999999999999999999999875 7999999999999999999999987
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCCccc
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDI 602 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v 602 (658)
||+||||||+|++|| ++||+|||++|++||+|+||||||||+|||++. +. +.++ +||+|||+|+..+.|.
T Consensus 226 Vd~VivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~----g~~i-~iEer~~~ev~~~~g~--- 295 (351)
T 1t5o_A 226 VDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RT----AKDV-VIEERPREELIFCGKR--- 295 (351)
T ss_dssp CSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CC----GGGC-CCCBCCTHHHHEETTE---
T ss_pred CCEEEECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cC----CCcc-ccccCCHHHhcccCCe---
Confidence 999999999999999 999999999999999999999999999999988 53 3566 8899999999876542
Q ss_pred cccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHHHHHHh
Q 006164 603 NHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 651 (658)
Q Consensus 603 ~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~ilrey 651 (658)
+..+++++++||+|||||++|||+||||.|+++|++...+.+-|
T Consensus 296 -----~~~~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~~~~l~~~~ 339 (351)
T 1t5o_A 296 -----QIAPLNVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPKVL 339 (351)
T ss_dssp -----ECSCTTCEECCBSEEEEEGGGCSEEEETTEEECSCHHHHHHHHT
T ss_pred -----eecCCCcceeCccccCCCHHHCCEEEeCCCccCcchHHHHHHHH
Confidence 34678999999999999999999999999999999988776543
No 6
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=4.1e-63 Score=520.54 Aligned_cols=283 Identities=24% Similarity=0.326 Sum_probs=238.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC-CCccHHHHHHHHHH
Q 006164 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP-ISLSESEAKATLHS 427 (658)
Q Consensus 349 araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~-~~~~~~eaKe~L~e 427 (658)
+.++|.+.+|.++++...+ +...+|.+.|+.++++|.++|| ++||+|+++++++.|.... ...+.+++|+.|++
T Consensus 21 s~aiAAi~aL~~~l~~s~~----~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~ 95 (315)
T 3ecs_A 21 ASAVAAIRTLLEFLKRDKG----ETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIE 95 (315)
T ss_dssp CHHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 4567888999999986543 3557899999999999999997 8999999999998764321 12356789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006164 428 DIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 428 ~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
.++.|+++ +..+++.|+++|.++|++|++|||||+|++|+++|+.|+++|++|+|||+||||++||.+|+++|.+.||+
T Consensus 96 ~~~~~~~~-~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~ 174 (315)
T 3ecs_A 96 RGELFLRR-ISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVP 174 (315)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCC
Confidence 99999854 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccccccccccccccccccccccc
Q 006164 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLA 587 (658)
Q Consensus 508 vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~ 587 (658)
||||+|+|++|+|++||+||||||+|++||+++||+|||++|++||+|+||||||||+|||++.++++ .+++ ++|+
T Consensus 175 vtli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~---~~~i-~~e~ 250 (315)
T 3ecs_A 175 VTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN---QQDV-PDKF 250 (315)
T ss_dssp EEEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSS---GGGS-CGGG
T ss_pred EEEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCC---cccC-Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999987765 3455 6788
Q ss_pred CCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHHH-HHHHhh
Q 006164 588 GDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPV-IVREYG 652 (658)
Q Consensus 588 ~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~~-ilrey~ 652 (658)
+++.++...+ ..++++.++||+||+||++|||+||||.|+++|++|+. +++.|+
T Consensus 251 ~~~~ev~~~~-----------~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~~vs~eLik~~~ 305 (315)
T 3ecs_A 251 KYKADTLKVA-----------QTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYL 305 (315)
T ss_dssp TC------------------------CCBCCCSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHT
T ss_pred cChhhccccc-----------cCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcchhhHHHHHHHH
Confidence 9888775432 24568999999999999999999999999999999986 555565
No 7
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=1.7e-62 Score=508.13 Aligned_cols=274 Identities=26% Similarity=0.360 Sum_probs=254.0
Q ss_pred hhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006164 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (658)
Q Consensus 328 mHPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI~d~~~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~ 407 (658)
+||.+..++..+.+++++|+.++|++++.+|..++.++ ++ .+|++.|+.++++|.++||+++||+|+++++
T Consensus 2 l~~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-~~------~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-- 72 (276)
T 1vb5_A 2 LPERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-DE------SLLEDAIMELREEVVKVNPSMASLYNLARFI-- 72 (276)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-CT------TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS--
T ss_pred CcccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-CH------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc--
Confidence 58899999999999999999999999999999999887 32 4678889999999999999999999999998
Q ss_pred HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC
Q 006164 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (658)
Q Consensus 408 ~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E 487 (658)
. .+++|+.+++.+++|+++ +..+++.|+++++++|++|++|||||+|++++.+|+.|+++|++|+|||+|
T Consensus 73 ---~------~~~~k~~l~~~~~~~~~~-~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~e 142 (276)
T 1vb5_A 73 ---P------VTNRRDILKSRALEFLRR-MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTE 142 (276)
T ss_dssp ---C------CCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---C------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeC
Confidence 1 335688899999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
|||++||+.++++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|++|||||||+||
T Consensus 143 trP~~qG~~~a~~L~~~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 143 SSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp CTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred CCcchhhHHHHHHHHHCCCCEEEEcHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCCCCCccccCCCccccccCCCcCCCCceeccccccccCCCCccEEEeCCCCCCCCCHH
Q 006164 568 FHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVP 645 (658)
Q Consensus 568 f~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~~~v~~~~~~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gil~PssV~ 645 (658)
|++. .. +.++ +||+||++| ++++++||+||+||++|||+||||.|+++|++|+
T Consensus 223 ~~~~-~~----~~~i-~iE~r~~~e-------------------~~v~v~np~fD~tP~~lI~~iITe~Gv~~p~~v~ 275 (276)
T 1vb5_A 223 FHPT-LK----SGDV-MLMERDLIR-------------------GNVRIRNVLFDVTPWKYVRGIITELGIVIPPRDI 275 (276)
T ss_dssp BCSS-CC----GGGC-CCCBCCCEE-------------------TTEECCCBCEEEECGGGCSEEEETTEEECTTTTC
T ss_pred cCcc-cC----cccc-ccccCCccc-------------------cCccccCCCeEecCHHHCCEEEeCCCccCccccC
Confidence 9987 42 3455 788898865 3578999999999999999999999999999875
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=2e-47 Score=376.34 Aligned_cols=164 Identities=21% Similarity=0.351 Sum_probs=144.7
Q ss_pred CCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHHHHhhh----ccEEEEcceeEecCCCeecccchHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~----Vd~VivGAdaVlaNG~VvNKiGT~~lAl~A 552 (658)
|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|++ ||+||||||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 68999999999999999875 7999999999999999999999998 999999999999999999999999999999
Q ss_pred HhCCCCeEeecccccccccccccccccccccccccCCCCCccccCCC----cccc----------ccCCCcCCCCceecc
Q 006164 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR----EDIN----------HLDGWDKSENLQLLN 618 (658)
Q Consensus 553 k~~~VPVyV~aetyKf~~~~~lDs~~~nEi~~IE~~dp~ev~~~~g~----~~v~----------~~~~~~~~~~l~v~N 618 (658)
|+|+||||||||+|||+++++.+ .++ +||+|||+|+...+|. .+.. ....|..+++++++|
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g----~~i-~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~N 156 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETG----DDI-IVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWN 156 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSG----GGC-CCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECC
T ss_pred HHcCCCEEEecccceeeeccCCc----cee-ecccCCHHHhccccCccccccccccccccccccccccccccCCCccccc
Confidence 99999999999999999998864 345 7888999999876542 0000 011256788999999
Q ss_pred ccccccCCCCccEEEeCCCCCCCCCHHH
Q 006164 619 LIYDATPSDYVSLIITDYGMIPPTSVPV 646 (658)
Q Consensus 619 p~FDvTPpeLIt~IITE~Gil~PssV~~ 646 (658)
|+||+||++|||+||||.|+++|+.+..
T Consensus 157 p~fDvTP~~lIt~iITE~Gv~~ps~~~~ 184 (191)
T 1w2w_B 157 PAFDITPHELIDGIITEEGVFTKNSSGE 184 (191)
T ss_dssp BSEEEECGGGCSEEEETTEEECCCTTSC
T ss_pred cccccCCHHHcCEEEecCcccCCCCcch
Confidence 9999999999999999999999976543
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.88 E-value=7.4e-23 Score=204.00 Aligned_cols=165 Identities=13% Similarity=0.175 Sum_probs=138.6
Q ss_pred ccCccccc--ccCCcceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHH-Hh-cC-
Q 006164 296 ARNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI-RD-YS- 366 (658)
Q Consensus 296 ~~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~m----HPAI~~LGl~~~~~~I~Gs~araiA~L~A~~~vI-~d-~~- 366 (658)
..+.|.|| +.||++++|+.|++++++|.+|++| +|+| |.++|++|++++++.- .+ ..
T Consensus 14 ~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaI--------------giaAA~glal~a~~~~~~~~~~~ 79 (211)
T 1w2w_A 14 ENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAI--------------AIVGSLSVLTEVQLIKHNPTSDV 79 (211)
T ss_dssp TSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHCTTSTG
T ss_pred CCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHH--------------HHHHHHHHHHHHHhccccCChhh
Confidence 33479999 9999999999999999999999999 7999 4588999999988753 11 10
Q ss_pred ---CCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006164 367 ---TPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRV 443 (658)
Q Consensus 367 ---~p~~~t~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~ 443 (658)
.|. ....++...|+..+++|.++|||+|||+|++++|++.+... .+.+++++.+.+.++.|++|. ..+++.
T Consensus 80 ~~~~~~--~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed-~~~n~~ 153 (211)
T 1w2w_A 80 ATLYSL--VNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDED-LANNMK 153 (211)
T ss_dssp GGGSCT--TCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 010 11237888899999999999999999999999999988643 356778999999999999885 568999
Q ss_pred HHHHHHHhc------c---CCCEEEeeCCh---------HHHHHHHHHHHHcCCee
Q 006164 444 IVKHAVTKI------R---DGDVLLTYGSS---------SAVEMILQHAHELGKQF 481 (658)
Q Consensus 444 Ia~~a~~~I------~---dgdvILT~g~S---------saV~~vL~~A~e~gk~f 481 (658)
|++||+++| . +|++||||||+ +++ ++|+.||++|+.|
T Consensus 154 IG~~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTAL-gvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 154 MGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTAL-GVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHH-HHHHHHHHcCCcc
Confidence 999999999 8 89999999998 555 9999999998765
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.03 E-value=1.5e-05 Score=80.31 Aligned_cols=116 Identities=15% Similarity=0.060 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHc----CCe-eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~----gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds 514 (658)
..+.|++.|+++|++|++|..-+.||+. .+++...+. +.+ ++| |+.| ...+.+|.+.||++.++.+
T Consensus 8 ~K~~IA~~Aa~~I~dg~~I~LgsGST~~-~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 8 YKKEAAHAAIAYVQDGMVVGLGTGSTAR-YAVLELARRLREGELKGVVG-VPTS------RATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCSHHHH-HHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCCCT-
T ss_pred HHHHHHHHHHHHCCCCCEEEEcCCHHHH-HHHHHHhhhhhhcCCCCEEE-ECCc------HHHHHHHHhCCCeEEEcCC-
Confidence 4567999999999999999976666655 566666543 224 776 4443 5567788888998877722
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHHhCCCCeEeeccccccccc
Q 006164 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 515 Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.++|+.|+|||.|-.++......|.+.+ +++++. ...|||+|+..||...
T Consensus 79 ------~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~ 130 (227)
T 1uj6_A 79 ------EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPV 130 (227)
T ss_dssp ------TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSS
T ss_pred ------CcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccc
Confidence 3799999999999999855555566665 456653 4499999999999875
No 11
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.72 E-value=6.8e-05 Score=76.40 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHH-hccCCCEEEeeCChHHHHHHHHHHHHc---C-C-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 439 LADRVIVKHAVT-KIRDGDVLLTYGSSSAVEMILQHAHEL---G-K-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 439 ~a~~~Ia~~a~~-~I~dgdvILT~g~SsaV~~vL~~A~e~---g-k-~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
...+.|++.|++ +|++|++|. .|.+||+..+++...+. + . .++| |+-| ...+.+|.+.||++..+.
T Consensus 11 ~~K~~iA~~Aa~~~I~dg~~Ig-LgsGST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~v~~l~ 82 (244)
T 2f8m_A 11 SLKKIVAYKAVDEYVQSNMTIG-LGTGSTVFYVLERIDNLLKSGKLKDVVC-IPTS------IDTELKARKLGIPLTTLE 82 (244)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSTTTHHHHHHHHHHHHHTSSCSCEE-EESS------HHHHHHHHHHTCCBCCCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhccCCCCEEE-ECCc------HHHHHHHHHCCCeEEEec
Confidence 366789999999 999999988 67776666777766543 2 1 4665 4333 345667777799877662
Q ss_pred chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHHhCCCCeEeeccccccc-cc
Q 006164 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ER 571 (658)
Q Consensus 513 DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~-~~ 571 (658)
.+.++|+.|.|||.|-.+++++.--|-+.+-- +.-....-|||+|+..||. ++
T Consensus 83 ------~~~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~ 137 (244)
T 2f8m_A 83 ------KHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNG 137 (244)
T ss_dssp ------SSCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSC
T ss_pred ------ccCcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCcccccc
Confidence 33489999999999999977776666655544 2445677899999999999 65
No 12
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.63 E-value=0.00015 Score=73.05 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHc---CC--eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~---gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds 514 (658)
..+.|++.|+++|++|++|. .+.+||+..+++...+. +. +++| |+-| ...+.+|.+.||++..+ .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~~a~~l~~~gi~vi~l--~ 75 (229)
T 1lk5_A 6 MKKIAAKEALKFIEDDMVIG-LGTGSTTAYFIKLLGEKLKRGEISDIVG-VPTS------YQAKLLAIEHDIPIASL--D 75 (229)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHTTSSCSCEE-EESS------HHHHHHHHHTTCCBCCG--G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhhccCCCEEE-ECCc------HHHHHHHHhCCCeEEEe--C
Confidence 45679999999999999998 56666665777776543 21 5665 4333 35566777788877653 2
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 515 Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
. +.++|+.|+|||.|-.++++..-.|-+.+- +++ ....-|||+|+..||...
T Consensus 76 ~----~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~-~~A~~~ivlaD~SK~~~~ 129 (229)
T 1lk5_A 76 Q----VDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIE-YRAGTFIVLVDERKLVDY 129 (229)
T ss_dssp G----CSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSS
T ss_pred C----cccCCEEEECCCeECCCCCeecCHHHHHHHHHHHH-HhcCCeEEEEchhhhhhh
Confidence 1 247999999999999886665544444443 233 345589999999999875
No 13
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.61 E-value=8.9e-05 Score=74.36 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i 519 (658)
..+.|++.|+++|++|++|. .+.+||+..+++...+.+.+++|.|+-| ...+.+|.+.||++..+ ..
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS------~~~a~~l~~~gi~vi~l--~~---- 72 (219)
T 1m0s_A 6 MKKLAAQAALQYVKADRIVG-VGSGSTVNCFIEALGTIKDKIQGAVAAS------KESEELLRKQGIEVFNA--ND---- 72 (219)
T ss_dssp HHHHHHHHHGGGCCTTSEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCh------HHHHHHHHhCCCeEEEe--Cc----
Confidence 44679999999999999998 5666666677777654311567645544 34566777788877653 21
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+.++|+.|+|||.|-.++++..-.|-+.+- ++++ ...-|||+|+..||...
T Consensus 73 ~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~ 125 (219)
T 1m0s_A 73 VSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAA-LAKKFICIVDSSKQVDV 125 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHH-HEEEEEEEEEGGGBCSS
T ss_pred cccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcHHhhc
Confidence 147999999999999876665543443333 3333 33489999999999875
No 14
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.54 E-value=0.00016 Score=72.70 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i 519 (658)
..+.|++.|+++|++|++|.. |.+||+..+++...+..+++++.|+-|- ..+..|.+.||++..+.+
T Consensus 12 ~K~~iA~~A~~~V~~g~~Igl-gsGST~~~~i~~L~~~~~~itv~VtnS~------~~a~~l~~~gi~l~~l~~------ 78 (224)
T 3kwm_A 12 LKKLAATEAAKSITTEITLGV-GTGSTVGFLIEELVNYRDKIKTVVSSSE------DSTRKLKALGFDVVDLNY------ 78 (224)
T ss_dssp HHHHHHHHHHTTCCSSEEEEE-CCSHHHHHHHHHGGGCTTTEEEEEESCH------HHHHHHHHTTCCBCCHHH------
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHhhcCceEEEECCcH------HHHHHHHHcCCeEEecCc------
Confidence 446789999999999987765 6666665777776554456777565543 456678888998654321
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH-HHHHhCCCCeEeeccccccccc
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
..++|+.|.|||.|-.++.++---|...+= =+......-|||+++..||.++
T Consensus 79 ~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~ 131 (224)
T 3kwm_A 79 AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNT 131 (224)
T ss_dssp HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSS
T ss_pred cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhh
Confidence 258999999999999998776644443331 2223345679999999999875
No 15
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.31 E-value=0.00054 Score=70.17 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv 516 (658)
..+.|++.|+++|++|++|.. |.+||+..+++...+ .|.++.+ |+- +...+..|.+.||++..+.+
T Consensus 27 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~gl~Itv-Vtt------S~~ta~~l~~~GI~l~~l~~--- 95 (255)
T 3hhe_A 27 LKKMAALKALEFVEDDMRLGI-GSGSTVNEFIPLLGERVANGLRVTC-VAT------SQYSEQLCHKFGVPISTLEK--- 95 (255)
T ss_dssp HHHHHHHHHHTTCCTTEEEEE-CCSHHHHHHHHHHHHHHHTTCCEEE-EES------SHHHHHHHHHTTCCBCCTTT---
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhccCCcEEE-EcC------CHHHHHHHHHcCCcEEeccc---
Confidence 345688899999999987665 666666567766544 2334553 332 23456778888998765432
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHHhCCCCeEeecccccccccc
Q 006164 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 517 ~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++|+.|.|||.|-.+..++---|.+.+= =+......-|||+++..||.++.
T Consensus 96 ---~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~L 149 (255)
T 3hhe_A 96 ---IPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTL 149 (255)
T ss_dssp ---CCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSS
T ss_pred ---ccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhh
Confidence 347999999999999987776533332221 22334566799999999998753
No 16
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00033 Score=72.08 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-hcc--CCCEEEeeCChHHHHHHHHHHHHc---CC------eeEEEEeCCCCCchHHHHHHHHHhCCCC
Q 006164 440 ADRVIVKHAVT-KIR--DGDVLLTYGSSSAVEMILQHAHEL---GK------QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 440 a~~~Ia~~a~~-~I~--dgdvILT~g~SsaV~~vL~~A~e~---gk------~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
..+.|++.|++ +|. +|++|. .|.+||+..+++...+. +. .+.| |+-| ...+..|.+.||+
T Consensus 21 ~K~~IA~~Aa~~~I~~~dg~~Ig-LgsGST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~~a~~l~~~gi~ 92 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFDDHKIIG-IGSGSTVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQSRNLILDNKLQ 92 (264)
T ss_dssp HHHHHHHHHHHHHCCTTTCCEEE-ECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccCCCCCCEEE-EcChHHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HHHHHHHHHCCCe
Confidence 44678999998 999 999988 56666655677766543 21 3555 4333 3456777788887
Q ss_pred EEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHHhCCCCeEeeccccccc-cc
Q 006164 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ER 571 (658)
Q Consensus 508 vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~-~~ 571 (658)
+..+ . .+.++|+.|+|||.|-.++.++.--|-+.+-- +......-|||+|+..||. ++
T Consensus 93 v~~l--~----~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~ 152 (264)
T 1xtz_A 93 LGSI--E----QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKH 152 (264)
T ss_dssp ECCT--T----TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSS
T ss_pred EEEe--h----hcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccc
Confidence 6554 2 22579999999999998876665555544433 2334566899999999999 54
No 17
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.21 E-value=7.4e-05 Score=74.92 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i 519 (658)
..+.|++.|+++|++|++|.. +.+||+..+++...+...+++|.|+-|-+- +.+|.+.||++..+ +.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I~L-dsGST~~~la~~L~~~~~~itv~VTnS~~~------a~~l~~~gi~vi~l--~~---- 72 (219)
T 1o8b_A 6 LKKAVGWAALQYVQPGTIVGV-GTGSTAAHFIDALGTMKGQIEGAVSSSDAS------TEKLKSLGIHVFDL--NE---- 72 (219)
T ss_dssp -----------------CEEE-CCSCC---------------CCEEESCCC------------------CCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEEE-cChHHHHHHHHHHhccCCCEEEEECCcHHH------HHHHHhCCCeEEEe--Cc----
Confidence 345789999999999999984 555555466666644311466546666543 34555567765443 22
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+.++|+.|+|||.|-.++.+..--|-+.+- +++. ...-+|++|+..||...
T Consensus 73 ~~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~ 125 (219)
T 1o8b_A 73 VDSLGIYVDGADEINGHMQMIKGGGAALTREKIIAS-VAEKFICIADASKQVDI 125 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHH-HEEEEEEEEEGGGBCSS
T ss_pred cCcCCEEEECcceECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcccccc
Confidence 257999999999999887766433444433 3333 33489999999999875
No 18
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.12 E-value=0.0011 Score=66.63 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHc----CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~----gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA 515 (658)
..+.|++.|+++|++|++|.. |.+||+..+++...+. +.++.+ |+-| ...+..|.+.||++..+.+
T Consensus 4 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~~~~~i~~-VttS------~~t~~~l~~~Gi~l~~l~~-- 73 (225)
T 3l7o_A 4 LKKIAGVRAAQYVEDGMIVGL-GTGSTAYYFVEEVGRRVQEEGLQVIG-VTTS------SRTTAQAQALGIPLKSIDE-- 73 (225)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSTTHHHHHHHHHHHHHHHCCCCEE-EESS------HHHHHHHHHHTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhhhcCCCEEE-EcCC------HHHHHHHhccCceEEecCc--
Confidence 345789999999999998776 5555554666665543 456665 4333 2345677778998765432
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHHhCCCCeEeecccccccccc
Q 006164 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 516 v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
..++|+.|.|||.|-.+..++---|.+.+ -++| ....-|||+++..||.++.
T Consensus 74 ----~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva-~~A~~~iviaD~sK~~~~L 127 (225)
T 3l7o_A 74 ----VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVG-TLTKDYIWVVDESKMVDTL 127 (225)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSS
T ss_pred ----ccccCEEEEcCCccCcccCeecCchhhhHHHHHHH-HhCCeEEEEEecccchhhc
Confidence 34899999999999999887664444333 2222 3446799999999998753
No 19
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=96.92 E-value=0.004 Score=62.68 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHc----CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~----gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA 515 (658)
..+.|++.|+++|++|++|.. +.+||+..+++...+. +.++.+ |+-| ...+..|.+.||++.- .+.
T Consensus 6 ~K~~iA~~A~~~I~~g~~Igl-gsGST~~~~~~~L~~~~~~~~l~itv-VtnS------~~~a~~l~~~gi~v~~--l~~ 75 (226)
T 2pjm_A 6 LKLKVAKEAVKLVKDGMVIGL-GTGSTAALFIRELGNRIREEELTVFG-IPTS------FEAKMLAMQYEIPLVT--LDE 75 (226)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE-CCSHHHHHHHHHHHHHHHHHTCCCEE-EESS------HHHHHHHHHTTCCBCC--TTT
T ss_pred HHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHhhhhccCCcEEE-EeCc------HHHHHHHHhcCCeEEe--ecc
Confidence 446799999999999998776 5555554666665442 335553 3332 3455678889998662 222
Q ss_pred HHHHhhhccEEEEcceeEecC-CCeecccchHHH-HHHHHhCCCCeEeecccccccccc
Q 006164 516 ISYIIHEVTRVFLGASSVLSN-GTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 516 v~~iM~~Vd~VivGAdaVlaN-G~VvNKiGT~~l-Al~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+. +|+.|.|||.|-.+ +.++---|.+.+ --+-.....-|||++...||.++.
T Consensus 76 ----~~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~L 129 (226)
T 2pjm_A 76 ----YD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKL 129 (226)
T ss_dssp ----CC-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESST
T ss_pred ----cc-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhcc
Confidence 33 99999999999999 776554443322 112223345799999999999753
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.64 E-value=0.0028 Score=64.34 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhccC----CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHH
Q 006164 441 DRVIVKHAVTKIRD----GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (658)
Q Consensus 441 ~~~Ia~~a~~~I~d----gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv 516 (658)
.+.|++.|+++|++ |++|-. |.+||+..++....+..+++..+|.-| ...+..|.+.||++..+.+
T Consensus 15 K~~aA~~A~~~V~d~~~~g~vIGL-GtGST~~~~i~~L~~~~~~i~~~V~tS------~~t~~~~~~~Gi~l~~l~~--- 84 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVPQGAVIGV-GTGSTANCFIDALAAVKDRYRGAVSSS------VATTERLKSHGIRVFDLNE--- 84 (239)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEE-CCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCGGG---
T ss_pred HHHHHHHHHHHhhccCcCCCEEEE-CccHHHHHHHHHHHhhhccceEEeCCc------HHHHHHHHHcCCcEEeccc---
Confidence 34566777777777 887665 666666677777765434555445433 3556778889998764322
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHHhCCCCeEeecccccccccc
Q 006164 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 517 ~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lA-l~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
..++|+.|.|||-|-.++.++---|.+.+= =+......-|||+++..||.++.
T Consensus 85 ---~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~L 138 (239)
T 3uw1_A 85 ---IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAML 138 (239)
T ss_dssp ---CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSB
T ss_pred ---ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhc
Confidence 247999999999999998776633332211 12222344789999999998753
No 21
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=90.05 E-value=0.3 Score=49.17 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA 515 (658)
..+..++.|+++|++|. |+=.|.+||+..++....+ .+. .+.++-| ..+....+.+.||+++-+.+
T Consensus 7 ~K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~i~~L~~~~~~~~l--~i~~V~t-----S~~t~~~a~~~Gi~l~~l~~-- 76 (228)
T 4gmk_A 7 LKQLVGTKAVEWIKDGM-IVGLGTGSTVKYMVDALGKRVNEEGL--DIVGVTT-----SIRTAEQAKSLGIVIKDIDE-- 76 (228)
T ss_dssp HHHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHCC--CCEEEES-----SHHHHHHHHHTTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCC-EEEECchHHHHHHHHHHHHHHhhcCC--cEEEEeC-----cHHHHHHHHHcCCceeChHH--
Confidence 34557788999999987 4566788887777777644 233 3333322 22445667778998765544
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchH-----HHHHHHHhCCCCeEeeccccccccc
Q 006164 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTA-----CVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 516 v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~-----~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
..++|..|=|||-|-.|..++--=|.+ .+|.+|+ -|+|++...|+.++
T Consensus 77 ----~~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~----~fI~IaD~sK~v~~ 129 (228)
T 4gmk_A 77 ----VDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSN----KNMWIVDESKMVDD 129 (228)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEE----EEEEEEEGGGBCSS
T ss_pred ----CCccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhh----heEEEeccccccCc
Confidence 247999999999999998877555533 3444444 48999999999875
No 22
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=84.91 E-value=1.9 Score=43.34 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC--CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g--k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~ 518 (658)
.+..++.|+++|++|.+ +=.|.+||+..++..+.+.. ..+.|+.+.|. .+....+.+.||+++.+.+ +
T Consensus 7 K~~aa~~A~~~V~~gmv-vGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS-----~~t~~~a~~~gi~l~~l~~--~-- 76 (226)
T 3ixq_A 7 KLKVAKEAVKLVKDGMV-IGLGTGSTAALFIRELGNRIREEELTVFGIPTS-----FEAKMLAMQYEIPLVTLDE--Y-- 76 (226)
T ss_dssp HHHHHHHHGGGCCTTCE-EEECCSHHHHHHHHHHHHHHHHHTCCCEEEESS-----HHHHHHHHHTTCCBCCTTT--C--
T ss_pred HHHHHHHHHHhCCCCCE-EEeCcHHHHHHHHHHHHHhhhhcCCeeEeeccc-----HHHHHHHHhcCCCcccccc--c--
Confidence 34567789999999874 56788888878887765421 12345544332 2333455678998765433 1
Q ss_pred HhhhccEEEEcceeEecCC-CeecccchHHHH--HHHHhCCCCeEeeccccccccc
Q 006164 519 IIHEVTRVFLGASSVLSNG-TVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 519 iM~~Vd~VivGAdaVlaNG-~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.+|..|=|||-|-..+ .++--=|.+.+= ++| ....-|+|+++..|+.++
T Consensus 77 ---~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA-~~a~~~I~I~D~sK~v~~ 128 (226)
T 3ixq_A 77 ---DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVD-YNANEFVVLVDESKLVKK 128 (226)
T ss_dssp ---CCSEEEECCSEEETTTCCEECCTTSCHHHHHHHH-HHSSEEEEEEEGGGEESS
T ss_pred ---cccEEEeCcchhccccceEEecchHHHHHHHHHH-HHhhheEEEeccccchhh
Confidence 3899999999996433 333333332211 222 234568999999999865
No 23
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=83.00 E-value=4.6 Score=40.54 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.2
Q ss_pred hccEEEEcceeEecCCCeeccc
Q 006164 522 EVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKi 543 (658)
++|..|+.|...-.+|.+.-..
T Consensus 151 ~~DvAli~a~~aD~~GN~~~~~ 172 (235)
T 3rrl_A 151 TGDYGLIKAYKSDTLGNLVFRK 172 (235)
T ss_dssp CEEEEEEECSEEETTCCEECCG
T ss_pred CCeEEEEEeeecCCCceEEEec
Confidence 5799999999999999987654
No 24
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=79.18 E-value=7.4 Score=38.75 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC------------------chHHHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK------------------HEGKLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~------------------~EG~~La~eL~~~- 504 (658)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|.... ..-..++++|.+.
T Consensus 21 ~g~~~q~~l~-~~~VlVvG~Gg~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 21 FDFDGQEALK-DSRVLIVGLGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp THHHHHHHHH-HCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-CCeEEEEeeCHHHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 4445555554 46899999886655556666666753 5555555441 1223445667664
Q ss_pred -CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++.++.+. +..+..++.++|.||...|..- --+.+.-.|+.+++|++.++
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 56666543 2344556789999998876542 23667778899999998763
No 25
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=78.39 E-value=20 Score=31.11 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHhCCCCE---EEE--cchHHHHHh---h--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 499 RRLVRKGLSC---TYT--HINAISYII---H--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 499 ~eL~~~GI~v---TlI--~DsAv~~iM---~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..+.+.|+++ +.. ..+....++ . ++|.|++|++. .|.+-. -.|+..-.+ .++.++||+|+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~---~~~~~~~~~Gs~~~~v-l~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQG---TNGDKSLLLGSVAQRV-AGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSC---TTCCSCCCCCHHHHHH-HHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC---CccccceeeccHHHHH-HhhCCCCEEEC
Confidence 4556689877 432 233333333 3 69999999975 233332 246655444 55667999985
No 26
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=77.32 E-value=15 Score=30.51 Aligned_cols=99 Identities=15% Similarity=0.069 Sum_probs=62.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhhccEEEEcce
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~VivGAd 531 (658)
+.+|+..|.+..=..+++.+.+.| .++|++++-.+. -+..+...|+....... ..+..++..+|.||..+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~- 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLA-----ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA- 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHH-----HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS-
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHH-----HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC-
Confidence 457888888654334455555555 367888775432 12344466776543322 34555677788888665
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEeeccccccc
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
| -..+..++..|...+++++.++....+.
T Consensus 78 -----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 106 (118)
T 3ic5_A 78 -----P----FFLTPIIAKAAKAAGAHYFDLTEDVAAT 106 (118)
T ss_dssp -----C----GGGHHHHHHHHHHTTCEEECCCSCHHHH
T ss_pred -----C----chhhHHHHHHHHHhCCCEEEecCcHHHH
Confidence 1 1246788889999999999887655443
No 27
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=77.27 E-value=14 Score=38.33 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=58.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHh--
Q 006164 454 DGDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-- 520 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-- 520 (658)
...+++|-|.+.++..++..+. +.|...+|++. .|.+.+...+ +...|+.+..+... .+-..+
T Consensus 105 ~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 180 (437)
T 3g0t_A 105 ARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFI--DPGFNLNKLQ--CRILGQKFESFDLFEYRGEKLREKLESYLQT 180 (437)
T ss_dssp GGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEE--ESCCHHHHHH--HHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT
T ss_pred cccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEe--CCCcHhHHHH--HHHcCCEEEEEeecCCCCccCHHHHHHHHhc
Confidence 4477888887778866666554 44442256655 4666664433 34568887777532 223333
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.++.+|++ +.---..|.++..---..++-+|++|++.+++=
T Consensus 181 ~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 181 GQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221 (437)
T ss_dssp TCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE
Confidence 24556655 222222344433333344677899999988763
No 28
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=75.47 E-value=23 Score=30.67 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHhCCC-CEEEE--cchHHHHHhh------hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 500 RLVRKGL-SCTYT--HINAISYIIH------EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 500 eL~~~GI-~vTlI--~DsAv~~iM~------~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.+.|+ +++.. .......++. ++|.|++|++.- |.+-. -.|+..-.+ .++..+||+|+
T Consensus 77 ~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 3445788 66543 2233333332 699999999853 22222 256655444 56667999986
No 29
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=75.47 E-value=7.2 Score=39.65 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=64.5
Q ss_pred CCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCC--CchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhhccEEEE
Q 006164 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRP--KHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP--~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~Vd~Viv 528 (658)
+.+||..|-+.-+... ++.+.+.| .+|+++.-.+ ..+-......|...|+.+..... ..+..++.+.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~----- 82 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEH----- 82 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHT-----
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhC-----
Confidence 3578888876555433 34444556 4566665444 22333445677788887655432 3455566621
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCC-CCeEeec
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVCC 563 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~a 563 (658)
|+|.|+.+.+..|-.|+..+.-+|+..+ ++.+|.+
T Consensus 83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 83 EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp TCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred CCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 4455555555679999999999999999 9988864
No 30
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=75.07 E-value=20 Score=39.89 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhc------cCCCEEEeeCCh---HHHHHHHHHH-HHcCCeeEE---EEeCCCCCchHHHHHHHHHhCCCC
Q 006164 441 DRVIVKHAVTKI------RDGDVLLTYGSS---SAVEMILQHA-HELGKQFRV---VIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 441 ~~~Ia~~a~~~I------~dgdvILT~g~S---saV~~vL~~A-~e~gk~f~V---iV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
.+.|+++++++| +||.+| =+|-+ .+|...|..- .+.+..-.+ -+.+ -...|.++|.-
T Consensus 253 ~~~IA~~~a~~i~~~g~l~dG~~l-qlGiG~ip~aV~~~L~~~~~~l~i~se~g~~g~~~---------~~~~lieaG~i 322 (519)
T 2hj0_A 253 ELLIAEYAAKVITSSPYYKEGFSF-QTGTGGASLAVTRFMREQMIKDDIKANFALGGITN---------AMVELLEEGLV 322 (519)
T ss_dssp HHHHHHHHHHHHHTSTTCSTTCEE-ECCSSHHHHHHHHHHHHHHHHSCCCEEEECSEECH---------HHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhcccCCCCCEE-EeccChHHHHHHHHHhhhcccceeeeceeccCcCh---------hHHHHHHCCCC
Confidence 456888888885 899554 34544 4566666554 333333333 1111 13456666642
Q ss_pred E-E--------------------EEcchHHHH--------HhhhccEEEEcceeEecCCCeeccc-----------chHH
Q 006164 508 C-T--------------------YTHINAISY--------IIHEVTRVFLGASSVLSNGTVCSRV-----------GTAC 547 (658)
Q Consensus 508 v-T--------------------lI~DsAv~~--------iM~~Vd~VivGAdaVlaNG~VvNKi-----------GT~~ 547 (658)
. + .+.+....| ++.+.|..|+||=-|-.+|.+.|-. |..-
T Consensus 323 ~~~~~~~~f~~G~~~~~~~n~~~~~~~~~~~~~n~~n~p~~i~~ldv~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~D 402 (519)
T 2hj0_A 323 DKILDVQDFDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCD 402 (519)
T ss_dssp EEEEESEESSHHHHHHHHHTTTTEEECCHHHHHCSSSSCCGGGGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHHH
T ss_pred CCCccccccccchHHHHHhCcHhhEEEchHHhhccCCCHHHhccCCeeeeeeEEEccCCceeeeeccCCeEecccccHHH
Confidence 2 1 233444455 4668999999999999999888776 2233
Q ss_pred HHHHHHhCCCCeEeecccc
Q 006164 548 VAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 548 lAl~Ak~~~VPVyV~aety 566 (658)
++.-|+. +++|+++.
T Consensus 403 ~~~gA~~----~ii~~~~t 417 (519)
T 2hj0_A 403 TAFAAKM----SLVISPLV 417 (519)
T ss_dssp HHHHSSE----EEEECCSE
T ss_pred HhhccCe----EEEEEccc
Confidence 4444542 66666654
No 31
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=75.07 E-value=15 Score=37.44 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhccCCCEEEe-eCChHHHHHHHHHHHHcCCeeEEEE----eCCCCCc---hHHHHHHHHHhCCCCEEEEc
Q 006164 441 DRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVI----VDSRPKH---EGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT-~g~SsaV~~vL~~A~e~gk~f~ViV----~ESRP~~---EG~~La~eL~~~GI~vTlI~ 512 (658)
.+.|+.++++.|+||++|-+ +|-..+|..++...+ ++.+.+.. +...|.. .+.. ..|.. .+..+.
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiGiP~~va~~~~~~~--~~~l~l~~E~G~lg~~p~~~~~~~~d--~~~~~---~a~~~~ 80 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVY--APDCHIIVESGLMDCSPVEVPRSVGD--LRFMA---HCGCIW 80 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSSHHHHHHHHHHHTT--CTTCEEEETTTEEEECCSSCCSSTTC--HHHHT---SEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHHhc--CCCEEEEEeCceecCcccCcccCccC--CCcEe---ehhhhc
Confidence 45799999999999998765 343344544444332 34444432 2223321 1110 11111 344566
Q ss_pred chHHHH-H-----hh--hccEEEEcceeEecCCCee
Q 006164 513 INAISY-I-----IH--EVTRVFLGASSVLSNGTVC 540 (658)
Q Consensus 513 DsAv~~-i-----M~--~Vd~VivGAdaVlaNG~Vv 540 (658)
++.-.+ + +. ++|..|+||--|-.+|.+.
T Consensus 81 ~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 81 PNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp CHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred CHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 654433 3 33 7999999999999999998
No 32
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=74.03 E-value=4.8 Score=44.45 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=49.3
Q ss_pred HHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHH----------
Q 006164 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---------- 516 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv---------- 516 (658)
.+-..|+.||+++..|....++.+..........-+|+|+-. ..-|..++++|.+.|+++++|..+.-
T Consensus 315 ~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~ 392 (565)
T 4gx0_A 315 QRETVLTEQSLLVLAGTKSQLAALEYLIGEAPEDELIFIIGH--GRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVY 392 (565)
T ss_dssp --------------------------------CCCCEEEECC--SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEE
T ss_pred CCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEE
Confidence 445577889999999988777654433322112256777755 44588999999999999999963311
Q ss_pred ----------HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 517 ----------SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 517 ----------~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
..=+.++|.||+..+. .-=+..+++.||+.+....|++-
T Consensus 393 gD~t~~~~L~~agi~~ad~vi~~~~~---------d~~ni~~~~~ak~l~~~~~iiar 441 (565)
T 4gx0_A 393 GDATVGQTLRQAGIDRASGIIVTTND---------DSTNIFLTLACRHLHSHIRIVAR 441 (565)
T ss_dssp SCSSSSTHHHHHTTTSCSEEEECCSC---------HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred eCCCCHHHHHhcCccccCEEEEECCC---------chHHHHHHHHHHHHCCCCEEEEE
Confidence 1112356666655432 23457788999999987555553
No 33
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=73.74 E-value=6.7 Score=37.45 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=58.4
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEcchH--HHHHhhhccEEEEc
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINA--ISYIIHEVTRVFLG 529 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI-~vTlI~DsA--v~~iM~~Vd~VivG 529 (658)
.|.+||..|-+.-+.. +.+.+.++| .+|+++.-++.. +.+|...|+ .+ +..|-. +...+..+|.||
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~-----~~~~~~~~~~~~-~~~Dl~~~~~~~~~~~D~vi-- 89 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQ-----GPELRERGASDI-VVANLEEDFSHAFASIDAVV-- 89 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGG-----HHHHHHTTCSEE-EECCTTSCCGGGGTTCSEEE--
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHH-----HHHHHhCCCceE-EEcccHHHHHHHHcCCCEEE--
Confidence 4678999998765543 344455555 467776544332 234555677 43 333432 223333455554
Q ss_pred ceeEecCCCee-----------cccchHHHHHHHHhCCCCeEeecccc
Q 006164 530 ASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 530 AdaVlaNG~Vv-----------NKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.|-+.. |-.|+..+.-+|+.+++.-+|..-+|
T Consensus 90 -----~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 90 -----FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp -----ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred -----ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 443332 77899999999999998877776654
No 34
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=69.95 E-value=28 Score=32.01 Aligned_cols=84 Identities=7% Similarity=0.048 Sum_probs=49.3
Q ss_pred HHHHHhccCCCEEEeeCChHH--HHHHHHH-HHHcCCeeE----------------EEEeCCCCCchHHHHHHHHHhCCC
Q 006164 446 KHAVTKIRDGDVLLTYGSSSA--VEMILQH-AHELGKQFR----------------VVIVDSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Ssa--V~~vL~~-A~e~gk~f~----------------ViV~ESRP~~EG~~La~eL~~~GI 506 (658)
+.+++.|.+...|..+|.++. +...+.. ...-|+... +++.-|+-..+-.++++.+.+.|+
T Consensus 31 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~ 110 (180)
T 1jeo_A 31 DSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINN 110 (180)
T ss_dssp HHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC
Confidence 344455666678888887643 2222222 222333211 122222223344566788899999
Q ss_pred CEEEEcchHHHHHhhhccEEEEcc
Q 006164 507 SCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 507 ~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
++..|+++.-+ +.+.+|.+|.-.
T Consensus 111 ~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 111 NIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp CEEEEESSCCG-GGGGCSEEEECC
T ss_pred cEEEEeCCCCh-HHHhCCEEEEeC
Confidence 99999998766 667789887543
No 35
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=68.90 E-value=22 Score=35.87 Aligned_cols=101 Identities=9% Similarity=0.153 Sum_probs=56.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch------------HHHHHhh
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------AISYIIH 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds------------Av~~iM~ 521 (658)
...+++|.|.+.++..++..+.+.| -+|++. .|.+.+...+ +...|..+..+... .+-..+.
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELTKAN--DKIMIQ--EPVYSPFNSV--VKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEEC--SSCCTHHHHH--HHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCC--CEEEEc--CCCCHHHHHH--HHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 3467788777778866666554333 355553 3666665443 34568777766422 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+ .++|+=.+---..|.++..---..++-+|+.|++.+++
T Consensus 164 ~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 164 D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4 33332222222344444444445566789999998876
No 36
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=68.62 E-value=65 Score=28.77 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=55.5
Q ss_pred CEEEeeCC-hHH----HHHHHHHHHHcCCeeEEE-EeCCCCC------chHHHH----HHHHHhCCCCEEE---Ecc-hH
Q 006164 456 DVLLTYGS-SSA----VEMILQHAHELGKQFRVV-IVDSRPK------HEGKLL----LRRLVRKGLSCTY---THI-NA 515 (658)
Q Consensus 456 dvILT~g~-Ssa----V~~vL~~A~e~gk~f~Vi-V~ESRP~------~EG~~L----a~eL~~~GI~vTl---I~D-sA 515 (658)
.+++-+.. |.. ++..+..|...+..+.++ |.+..+. .++.+. ...|.+.|+++.. +.. ..
T Consensus 26 ~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~ 105 (155)
T 3dlo_A 26 PIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEP 105 (155)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCH
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCH
Confidence 34455566 643 433344444445566554 4443221 122222 3456668998764 322 22
Q ss_pred HHHH---hh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 516 ISYI---IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 516 v~~i---M~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.-.+ .. ++|.||+|+..--.-+.. -.|+..-. +.++..+||+|+
T Consensus 106 ~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 106 PDDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 2333 33 699999999875222221 25655444 456778999986
No 37
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=68.52 E-value=56 Score=28.00 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=32.1
Q ss_pred CCC-CEE--EEcchHHHHHh---h--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 504 KGL-SCT--YTHINAISYII---H--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 504 ~GI-~vT--lI~DsAv~~iM---~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.|+ +++ +........++ . ++|.|++|++.- |.+-. -.|+..-.+ .++.++||+|+
T Consensus 73 ~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 687 543 33333333333 3 799999999853 22221 256655444 45578999986
No 38
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=68.48 E-value=11 Score=35.53 Aligned_cols=100 Identities=8% Similarity=0.054 Sum_probs=57.0
Q ss_pred EEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc--hHHHHHhhhccEEEEcce
Q 006164 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI--NAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 457 vILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI--~D--sAv~~iM~~Vd~VivGAd 531 (658)
+||..|-+.-+...| +.+.++| .+|+++.-++...- .+ .++.+... .| ..+..++..+|.||--|-
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~-----~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVP-----QY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSC-----CC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchh-----hc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 577778766554433 3444444 67777654432100 01 23332222 12 244555667787776654
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4333333458899999999999999876665444
No 39
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=67.50 E-value=27 Score=35.53 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=56.3
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHHhh-hcc
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-EVT 524 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~-~Vd 524 (658)
....+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+.. ..+...|+.+..+... -+..+-. ++.
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALFDSG--DRVGIGA--PGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGLDLA 163 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCS
T ss_pred CHHHEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCe
Confidence 33467888887778866666554334 3555543 5555544 3345678888877532 1222222 344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+|++- .---..|.++..---..++-+|+.|++.+++
T Consensus 164 ~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 164 GLMVA-SPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 55442 1111234444333345577789999998776
No 40
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=66.82 E-value=23 Score=31.00 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=53.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHh-----hhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-----HEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM-----~~Vd~VivG 529 (658)
+..|+..|++..=..+.+.+.+.| ++|+++|..|. -+.++.+.|+.+.+. |..-...+ .++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~-----~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKE-----KIELLEDEGFDAVIA-DPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHH-----HHHHHHHCCCcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence 457888898775444455555555 46777776542 345666778765443 33222222 356777665
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.. +.-....++..|++.+++.+++
T Consensus 78 ~~---------~~~~n~~~~~~a~~~~~~~iia 101 (141)
T 3llv_A 78 GS---------DDEFNLKILKALRSVSDVYAIV 101 (141)
T ss_dssp CS---------CHHHHHHHHHHHHHHCCCCEEE
T ss_pred cC---------CHHHHHHHHHHHHHhCCceEEE
Confidence 43 2334466788888877554443
No 41
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=65.85 E-value=44 Score=31.61 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHhccCCCEEEeeCChHH--HH-HHHHHHHHcCCeeE--------------EEEe--CCCCCchHHHHHHHHHhCCC
Q 006164 446 KHAVTKIRDGDVLLTYGSSSA--VE-MILQHAHELGKQFR--------------VVIV--DSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Ssa--V~-~vL~~A~e~gk~f~--------------ViV~--ESRP~~EG~~La~eL~~~GI 506 (658)
+.+++.|.+...|..+|.++. +. .+-.....-|+... |+++ -|+-..+-.++++.+.+.|+
T Consensus 38 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~ 117 (200)
T 1vim_A 38 GEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGS 117 (200)
T ss_dssp HHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC
Confidence 344555666678888887532 22 22222222333211 1222 22222344566788899999
Q ss_pred CEEEEcchHHHHHhhhccEEEE
Q 006164 507 SCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 507 ~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
++..|+++.-+.+.+.+|.+|.
T Consensus 118 ~vI~IT~~~~s~La~~ad~~l~ 139 (200)
T 1vim_A 118 KLVAVTGKRDSSLAKMADVVMV 139 (200)
T ss_dssp EEEEEESCTTSHHHHHCSEEEE
T ss_pred eEEEEECCCCChHHHhCCEEEE
Confidence 9999999887788888999886
No 42
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=65.78 E-value=32 Score=35.19 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCEEEeeCChHHHHHHHHHHH------HcCCeeEEEEeCCCCCchHHHHH-HHHHhC---CCCEEEEc-chHHHHHhh-h
Q 006164 455 GDVLLTYGSSSAVEMILQHAH------ELGKQFRVVIVDSRPKHEGKLLL-RRLVRK---GLSCTYTH-INAISYIIH-E 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~------e~gk~f~ViV~ESRP~~EG~~La-~eL~~~---GI~vTlI~-DsAv~~iM~-~ 522 (658)
..+++|-|.+.++..+|+.+. +.|. +|+++. .+.+.+...+ ..+.+. |+.+.++. ...+-..+. +
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd--~vii~~-~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~l~~~i~~~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPER--RVIVTE-TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTC--CEEEEE-TTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCC--cEEEEc-CCCCCchHHHHHHHHHHhcCCceEEEeCcHHHHHHHhCCC
Confidence 467777665666655555543 3343 344443 3444332222 233333 88888886 334433443 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+|++ .+--...|.+.. --.|+-+|++|++.+++
T Consensus 166 ~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 166 TAVVML-THVNYKTGYMHD---MQALTALSHECGALAIW 200 (416)
T ss_dssp EEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-eccccCcccccC---HHHHHHHHHHcCCEEEE
Confidence 333333 222222355544 35677789999987776
No 43
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=65.15 E-value=7.4 Score=45.10 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCCEEEE
Q 006164 467 VEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 467 V~~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vTlI 511 (658)
|...|.+|+++|+..+|+|.-.....| ....+++|.++|+.|.|-
T Consensus 386 Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~wa~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 386 IISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYS 432 (705)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHHHHHHHHCCCEEEEc
Confidence 336677777888888888763333333 567778888888888774
No 44
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=65.14 E-value=37 Score=33.90 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=30.0
Q ss_pred hccEEEEcceeEecCCCeecc-c-c--hHHHHHHHHhCCCCeEeeccccccccc
Q 006164 522 EVTRVFLGASSVLSNGTVCSR-V-G--TACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNK-i-G--T~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.+|..|+-|...-.+|.+.-. . + ...+|++|+ +|+++.-++.++
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk------~VIveVn~~vp~ 198 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK------ITIAEAEEIVEA 198 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE------EEEEEEEEEECT
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC------EEEEEEeCCCCc
Confidence 589999999999999997665 2 2 244555565 566555454443
No 45
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=63.63 E-value=1.2e+02 Score=30.64 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=54.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH--HHHHHhCCCCEEEEcc--------hHHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL--LRRLVRKGLSCTYTHI--------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L--a~eL~~~GI~vTlI~D--------sAv~~iM~- 521 (658)
..+++|.|.+.++..++..+.+ .+..-+|++. .|.+.|... ...+...|+.+..+.. ..+-..+.
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 168 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITT--VMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE 168 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEE--TTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCCCEEEEC--cchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence 4677887777788666665511 1223356654 355555332 1223356888877753 12222232
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ ..---..|.++. --.++-+|++|++.+++
T Consensus 169 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 169 KTKLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333433 222222455554 35677889999988776
No 46
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=63.08 E-value=26 Score=35.19 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------hHHHHHhh-
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 521 (658)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|.++..+.. ..+-..+.
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 155 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFTKEN--ESVLVQP--PIYPPFFE--MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ 155 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHCCTT--CEEEECS--SCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCC--CEEEEcC--CCcHHHHH--HHHHcCCEEEeccceecCCcEEEcHHHHHHHhCc
Confidence 3467888777777766666654333 3555533 66655443 34456777665531 22333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ .+---..|.++..---..++-+|+.|++.+++
T Consensus 156 ~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 156 GVKLMLL-CSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp TCCEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5666665 33322334444333334455569999998886
No 47
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=62.45 E-value=46 Score=30.63 Aligned_cols=37 Identities=11% Similarity=-0.184 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRM 130 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEe
Confidence 4456678999999999999998777777789987753
No 48
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=61.42 E-value=46 Score=35.98 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=24.5
Q ss_pred cEEEEcceeEecCCCeecc-cchHH---------HHHHHHh-CCCCeEeecccc
Q 006164 524 TRVFLGASSVLSNGTVCSR-VGTAC---------VAMVAYG-FHIPVLVCCEAY 566 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNK-iGT~~---------lAl~Ak~-~~VPVyV~aety 566 (658)
|..|+||=-|-.+|.+.+- +|+.+ ++.-|+. .+=.+++|+++.
T Consensus 307 dv~i~ga~evD~~G~vn~~~~g~~~~~G~GG~~D~~~~A~~s~~gk~ii~~~~t 360 (439)
T 3d3u_A 307 MVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPST 360 (439)
T ss_dssp EEEEECCSCEETTSCC--------------CHHHHHHHHTTSTTCEEEEECCSE
T ss_pred cEEEehheEecCCCCEeeeccCCeeecccccHHHHhhcccccCCCeEEEEEeee
Confidence 8999999999999998754 44432 2333432 333567777654
No 49
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=61.08 E-value=37 Score=34.18 Aligned_cols=101 Identities=9% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------hHHHHHhh--
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-- 521 (658)
..+++|.|.+.++..++..+.+.| -+|++ ..|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 86 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~--~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 159 (391)
T 3dzz_A 86 DWCVFASGVVPAISAMVRQFTSPG--DQILV--QEPVYNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP 159 (391)
T ss_dssp GGEEEESCHHHHHHHHHHHHSCTT--CEEEE--CSSCCHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST
T ss_pred HHEEECCCHHHHHHHHHHHhCCCC--CeEEE--CCCCcHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc
Confidence 467777777777766666554333 34554 335555533 334456777666532 23334443
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++..|++ .+---..|.+++.---..++-+|+.|++.+++=
T Consensus 160 ~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 160 SVRMMVF-CNPHNPIGYAWSEEEVKRIAELCAKHQVLLISD 199 (391)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 4555544 222233455554444556677899999988763
No 50
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=61.05 E-value=30 Score=34.00 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=55.3
Q ss_pred CCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCC-C--c--hHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccE
Q 006164 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K--H--EGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTR 525 (658)
Q Consensus 455 gdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP-~--~--EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~ 525 (658)
+.+||..|-+.-+. .+++.+.+.| ++|+++.-++ . . +-...+.+|...|+.+.... | ..+..++..+|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 34678887653332 2234444556 4555554333 1 1 22223456677787654432 2 245566666666
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCC-CCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~ 562 (658)
||.-| +...-.|+..+.-+|+..+ +.-+|.
T Consensus 80 vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 80 VICAA-------GRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEECS-------SSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEECC-------cccccccHHHHHHHHHhcCCceEEee
Confidence 65433 3333567888888888888 887774
No 51
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.85 E-value=32 Score=31.62 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=49.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHH---HHH--hhhccEEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYI--IHEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv---~~i--M~~Vd~Viv 528 (658)
++.|+.+|++..=..+.+.+.+. |. +|+++|..|. -+..|.+.|+.+.+...... ..+ +.++|.||+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~-----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREE-----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHH-----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHH-----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 56788889987655555666665 54 6777776652 24556778887654321111 111 335566665
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCC
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
-.. +......++..++..+
T Consensus 112 ~~~---------~~~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 112 AMP---------HHQGNQTALEQLQRRN 130 (183)
T ss_dssp CCS---------SHHHHHHHHHHHHHTT
T ss_pred eCC---------ChHHHHHHHHHHHHHC
Confidence 332 1223345556777776
No 52
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=60.77 E-value=83 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.5
Q ss_pred hCCCC---EEEEcchHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 503 RKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 503 ~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.|++ +.+......-.++. ++|.|++|++.- +|-- --.|+..-.+ .++..+||+|+-
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~--~~~~-~~~Gs~~~~v-l~~~~~pVlvv~ 146 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGR--HGLA-LLLGSTANSV-LHYAKCDVLAVR 146 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEEE
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCC--CCcC-eEecchHHHH-HHhCCCCEEEEe
Confidence 34766 33444444344433 799999999863 2222 3456665555 455679999984
No 53
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=60.65 E-value=70 Score=31.96 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHh---hhccE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII---HEVTR 525 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM---~~Vd~ 525 (658)
+++|.|-+.++..++..+.+.| -+|++. .|.+-|..+...+...|+.+..+.. ..+-..+ +++..
T Consensus 74 v~~~~g~t~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 149 (386)
T 2dr1_A 74 LLVPSSGTGIMEASIRNGVSKG--GKVLVT--IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEA 149 (386)
T ss_dssp EEESSCHHHHHHHHHHHHSCTT--CEEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCE
T ss_pred EEEeCChHHHHHHHHHHhhcCC--CeEEEE--cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcE
Confidence 5667776777766665554333 356654 4556664444555667888777642 2333344 24555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++- .---..|.+.. --.++-+|++|++.+++
T Consensus 150 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 150 VTIT-YNETSTGVLNP---LPELAKVAKEHDKLVFV 181 (386)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEE-eecCCcchhCC---HHHHHHHHHHcCCeEEE
Confidence 5553 32233455543 36677789999988776
No 54
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=60.57 E-value=50 Score=33.14 Aligned_cols=103 Identities=12% Similarity=-0.019 Sum_probs=60.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH-------H-HHHhhhccE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------I-SYIIHEVTR 525 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA-------v-~~iM~~Vd~ 525 (658)
...+++|.|.+.++..+++.+.+.+..-+|++. .|.+.+... .+...|+++..+.... + ..+-+++..
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYP--NPFYQIYEG--AAKFIKAKSLLMPLTKENDFTPSLNEKELQEVDL 157 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCSE
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe--cCCcHhHHH--HHHHcCCEEEEcccCCCCCcchhHHhhhccCCCE
Confidence 357888988888887776666544102355554 455555433 3556788887775221 1 222246777
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++- .---..|.++..---..++-+|+.|++.+++
T Consensus 158 v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 192 (376)
T 3ezs_A 158 VILN-SPNNPTGRTLSLEELISWVKLALKHDFILIN 192 (376)
T ss_dssp EEEC-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEc-CCCCCcCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 7763 2222345555444444566679999987775
No 55
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=60.30 E-value=20 Score=35.23 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=44.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--h
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 522 (658)
.||.-|.++.+..+|... +.|. .++|..+= .+|...|.+.| .+.||++.++.. ..+...+. +
T Consensus 11 ~vl~SG~gsnl~all~~~-~~~~l~~~I~~Visn~~~a~~l~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 86 (209)
T 4ds3_A 11 VIFISGGGSNMEALIRAA-QAPGFPAEIVAVFSDKAEAGGLAKA---EAAGIATQVFKRKDFASKEAHEDAILAALDVLK 86 (209)
T ss_dssp EEEESSCCHHHHHHHHHH-TSTTCSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEECCcccHHHHHH---HHcCCCEEEeCccccCCHHHHHHHHHHHHHhcC
Confidence 578889999997766554 4443 45554333 37777776544 467999988752 34444554 5
Q ss_pred ccEEEEcc
Q 006164 523 VTRVFLGA 530 (658)
Q Consensus 523 Vd~VivGA 530 (658)
+|.+++-+
T Consensus 87 ~Dliv~ag 94 (209)
T 4ds3_A 87 PDIICLAG 94 (209)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 78877654
No 56
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=60.25 E-value=55 Score=32.81 Aligned_cols=109 Identities=11% Similarity=0.040 Sum_probs=62.9
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-------CCCCEEEEc--c-hHHHHHhhh
Q 006164 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-------KGLSCTYTH--I-NAISYIIHE 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-------~GI~vTlI~--D-sAv~~iM~~ 522 (658)
.+.+||..|-+.-|...| +.+.++| .+|+++.-++...-. ....|.. .++.+.... | ..+..++..
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQY-NLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHH-HHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchh-hhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 467899998776554333 4445555 577777655543222 2233333 344443322 1 345566667
Q ss_pred ccEEEEcceeEecCC--------CeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 523 VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 523 Vd~VivGAdaVlaNG--------~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+|.||--|-....+. --.|-.||..+.-+|+.+++.-+|.+-+
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 777776553211000 1357889999999999999876666544
No 57
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=60.04 E-value=1.2e+02 Score=31.48 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CCc---------hHHHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PKH---------EGKLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~~---------EG~~La~eL~~~- 504 (658)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|.. -.+ --..++..|.+.
T Consensus 26 ~G~~~q~~L~-~~~VlivG~GGlG~~ia~~La~~Gvg-~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 26 WGLEAQKRLR-ASRVLLVGLKGLGAEIAKNLILAGVK-GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HCHHHHHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred hCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 4566667776 57888899876655666766666864 44444322 111 123345777774
Q ss_pred -CCCEEEEcchH---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 505 -GLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 505 -GI~vTlI~DsA---v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+++++.+...- ...++...|.||.+.|.+ ---+.+.-+|+.+++||+.+
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSR---------DVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 57777765432 345677899998876543 22345777899999999876
No 58
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=59.30 E-value=86 Score=28.70 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 44566788899999999999988777778899888643
No 59
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=59.20 E-value=32 Score=33.78 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=28.1
Q ss_pred hccEEEEcceeEecCCCeeccc--c--hHHHHHHHHhCCCCeEeecccccccc
Q 006164 522 EVTRVFLGASSVLSNGTVCSRV--G--TACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKi--G--T~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
.+|..|+-|...-.+|.+.-.. + +..+|.+|| .|+++.-++.+
T Consensus 148 ~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~------~VIveVn~~vp 194 (220)
T 1k6d_A 148 RADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD------ITLVEPDELVE 194 (220)
T ss_dssp CEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE------EEEEEEEEEEC
T ss_pred CCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC------EEEEEEccccC
Confidence 5899999999999999977653 2 223444554 55555444443
No 60
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=59.20 E-value=14 Score=37.96 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=54.9
Q ss_pred HHHHHHHHHh----ccCCCEEEeeCChHHHHHHHHHHHHc--CCeeEEEEeCC------CCCchHHHHHHHHHhC-CCCE
Q 006164 442 RVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDS------RPKHEGKLLLRRLVRK-GLSC 508 (658)
Q Consensus 442 ~~Ia~~a~~~----I~dgdvILT~g~SsaV~~vL~~A~e~--gk~f~ViV~ES------RP~~EG~~La~eL~~~-GI~v 508 (658)
+.|++.|+++ |.+|++|. .++++++..+..+.... .+.++|+-+.. .|......+++.|.+. |+++
T Consensus 93 ~~ia~~AA~~l~~~i~~~~~ig-l~~GsT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~~~~~~ 171 (315)
T 2w48_A 93 SAMGQHGALLVDRLLEPGDIIG-FSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAES 171 (315)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSHHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-ECChHHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHHHCCce
Confidence 3466666664 88888755 57888876766655321 14567776532 3444456677888775 8777
Q ss_pred EEEcc-----hH-H-HHHh------------hhccEEEEccee
Q 006164 509 TYTHI-----NA-I-SYII------------HEVTRVFLGASS 532 (658)
Q Consensus 509 TlI~D-----sA-v-~~iM------------~~Vd~VivGAda 532 (658)
.++.- +. . -.++ ..+|+.|+|.-.
T Consensus 172 ~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg 214 (315)
T 2w48_A 172 HLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGS 214 (315)
T ss_dssp CCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBC
T ss_pred eEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCc
Confidence 54421 11 2 1112 269999999983
No 61
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=59.16 E-value=19 Score=38.77 Aligned_cols=91 Identities=10% Similarity=0.095 Sum_probs=59.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH-----hhhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 529 (658)
++.|+..|++..=..+.+.+.+.| +.|+|+|..|. .+.+|.+.|+++.+- |..=..+ +.+++.||+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~-----~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPD-----HIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHH-----HHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence 466888899876555555565555 57888888764 356777889987554 3322223 3467888776
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+ +..-+..+++.||.++..+.|+
T Consensus 76 ~~---------~~~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 76 ID---------DPQTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp CS---------SHHHHHHHHHHHHHHCTTCEEE
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCeEE
Confidence 54 2455677888999887553433
No 62
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=59.10 E-value=1.5e+02 Score=29.66 Aligned_cols=101 Identities=12% Similarity=0.182 Sum_probs=54.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHH-HHhCCCCEEEEcc--------hHHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHI--------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~e-L~~~GI~vTlI~D--------sAv~~iM~- 521 (658)
..+++|.|.+.++..+++.+.+ .+..-+|++.+ |.+-|... ... +...|+.+..+.. ..+-..+.
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ--MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE 163 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET--TCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec--ccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4677887777788666665521 12334566653 44444322 222 3346888877742 23333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ ..---..|.++. --.++-+|+.|++.+++
T Consensus 164 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 164 KTRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLV 199 (406)
T ss_dssp TEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3334433 222222355555 45677789999987776
No 63
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=58.89 E-value=41 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHhCCCCEEEE--cchH---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 499 RRLVRKGLSCTYT--HINA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 499 ~eL~~~GI~vTlI--~DsA---v~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..|.+.|++++.. .... +..+..++|.|++|++.- |.+-.-.|+..-. +.++..+||+|+
T Consensus 73 ~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~---~~~~~~~Gs~~~~-vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSEN---SFLNKIFASHQDD-FIQKAPIPVLIV 137 (138)
T ss_dssp HHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTT---STTSSCCCCTTCH-HHHHCSSCEEEE
T ss_pred HHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCc---chHHHHhCcHHHH-HHhcCCCCEEEe
Confidence 4455678886543 2222 223333899999999752 2222222554333 355667999986
No 64
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=58.62 E-value=1.4e+02 Score=29.50 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=55.9
Q ss_pred CCEEEeeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHH-HHHHHHhCCCCEEEEcc--------hHHHHHhh
Q 006164 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHI--------NAISYIIH 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~----e~gk~f~ViV~ESRP~~EG~~-La~eL~~~GI~vTlI~D--------sAv~~iM~ 521 (658)
..+++|.|.+.++..++..+. +.| -+|++. .|.+.+.. .+..+...|+.+..+.. ..+-..+.
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 137 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRK--RTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD 137 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTC--CEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCC--CEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC
Confidence 467788777777866666554 233 355553 45555543 34556677988877742 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCC--CCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH--IPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~--VPVyV 561 (658)
++..|++ .+--...|.++. --.|+-+|+.|+ +.+++
T Consensus 138 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~ 176 (384)
T 1eg5_A 138 EDTFLVSI-MAANNEVGTIQP---VEDVTRIVKKKNKETLVHV 176 (384)
T ss_dssp TTEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEE
T ss_pred CCCeEEEE-ECCCCCcccccC---HHHHHHHHHhcCCceEEEE
Confidence 3344444 232223466655 256777889999 76654
No 65
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=58.18 E-value=24 Score=31.87 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHhCCCCEEEEc--chHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecccc
Q 006164 500 RLVRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 500 eL~~~GI~vTlI~--DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.|...|++++... ......++. ++|+||+|++.- |.+-. -.|+..-.+ .++..+||+|+-+..
T Consensus 95 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~ 165 (175)
T 2gm3_A 95 KCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNA 165 (175)
T ss_dssp HHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCG
T ss_pred HHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCc
Confidence 3455788775432 223333332 599999999853 22211 256654444 455679999996544
No 66
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=58.14 E-value=89 Score=31.86 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=56.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcch--------HHHHHhhhc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHEV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~~V 523 (658)
..+++|.|.+.++..+|+.+.+ .+..-+|++. .|.+.+... +..+...|+.+.++... .+-..+.+=
T Consensus 86 ~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE--TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC--CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 3678888877777666665543 1223355554 345555433 34556779988888532 222333221
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.++|+-..---..|.+.. --.|+-+|+.|++.+++
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 198 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHV 198 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEE
Confidence 233332222223455554 34577789999988776
No 67
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=58.07 E-value=45 Score=37.02 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred HHHHh--ccCCCEEEeeCCh----HHHHHHHHHHHHcC-CeeEEEEeCCCCCc-------------------hHHHHHHH
Q 006164 447 HAVTK--IRDGDVLLTYGSS----SAVEMILQHAHELG-KQFRVVIVDSRPKH-------------------EGKLLLRR 500 (658)
Q Consensus 447 ~a~~~--I~dgdvILT~g~S----saV~~vL~~A~e~g-k~f~ViV~ESRP~~-------------------EG~~La~e 500 (658)
.|+++ |++|++|...+.. ..+..+.+++.+.+ ++++++-.-..+.. -|.. .++
T Consensus 51 EAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~-~r~ 129 (509)
T 1xr4_A 51 EAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGK-LGE 129 (509)
T ss_dssp HHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHH-HHH
T ss_pred HHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHH-HHH
Confidence 45567 8999999988754 34555555555444 46777754222211 1212 223
Q ss_pred HHhC---CCCEEEEcchHHHHHhh----hccEEEEcceeEecCCCeecccc-----hHHHHHHHHhCCCCeEee
Q 006164 501 LVRK---GLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 501 L~~~---GI~vTlI~DsAv~~iM~----~Vd~VivGAdaVlaNG~VvNKiG-----T~~lAl~Ak~~~VPVyV~ 562 (658)
+.+. .+++.|..-....+++. .+|..|+.|...-.+|.+.-+-| +...+.++.....-|++-
T Consensus 130 ~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~A~~VIaE 203 (509)
T 1xr4_A 130 EISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLL 203 (509)
T ss_dssp HHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEEE
T ss_pred HHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhhCCEEEEE
Confidence 3332 36777764334667775 58999999999999999874323 444455555555544443
No 68
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=57.02 E-value=48 Score=33.23 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------hHHHHHhh-hccEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------NAISYIIH-EVTRV 526 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D------sAv~~iM~-~Vd~V 526 (658)
...+++|.|.+.++..+++.+.+.|. +|++.+ |.+.+... .+...|+.+..+.. ..+-..+. +...|
T Consensus 81 ~~~i~~t~g~~~a~~~~~~~~~~~gd--~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~v 154 (377)
T 3fdb_A 81 PEWIFPIPDVVRGLYIAIDHFTPAQS--KVIVPT--PAYPPFFH--LLSATQREGIFIDATGGINLHDVEKGFQAGARSI 154 (377)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTC--CEEEEE--SCCTHHHH--HHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCEE
T ss_pred HHHEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCcHhHHH--HHHHcCCEEEEccCCCCCCHHHHHHHhccCCCEE
Confidence 34678887777777666665543333 455543 55555433 34456888888752 23333343 34444
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++- +---..|.++..---..++-+|+.|++.+++
T Consensus 155 ~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 155 LLC-NPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp EEE-SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 432 1112234444333334466679999998876
No 69
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=56.96 E-value=41 Score=33.05 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=58.3
Q ss_pred CEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCc---hHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEE
Q 006164 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~---EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~Viv 528 (658)
.+||..|-+..+. .+++.+.+.| ++|+++.-.+.. +..+....|...|+.+.... | ..+..++..+|.||.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 4678777653332 2334444555 566666443321 22233345666776543322 2 355666777777765
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCC-CCeEee
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~ 562 (658)
-|-.... + .|-.|+..+.-+|+..+ +.-+|.
T Consensus 83 ~a~~~~~-~--~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 83 ALAGGVL-S--HHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCCCSSS-S--TTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred CCccccc-h--hhHHHHHHHHHHHHhcCCCceEEe
Confidence 5432111 1 26778999999999998 888774
No 70
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=56.60 E-value=1.5e+02 Score=28.91 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH----HHHHHHhCCCCEEEEcc---hHHHHHhh-----hccEEEEccee
Q 006164 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVRKGLSCTYTHI---NAISYIIH-----EVTRVFLGASS 532 (658)
Q Consensus 465 saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~----La~eL~~~GI~vTlI~D---sAv~~iM~-----~Vd~VivGAda 532 (658)
.++...+.-|...+..++++.+.. | .+..+ +...+...|++++.... +....++. .+|.||+|.+.
T Consensus 22 ~al~~A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~ 99 (290)
T 3mt0_A 22 LALKRAQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFP 99 (290)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEeccc
Confidence 466666666766777777665433 3 33332 23566678999877542 23333333 58999999975
Q ss_pred EecCCCeec-ccchHHHHHHHHhCCCCeEeecccccc
Q 006164 533 VLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 533 VlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
- |.+-. -.|+..-.+ .++.++||+|+-+...+
T Consensus 100 ~---~~~~~~~~gs~~~~v-l~~~~~PVlvv~~~~~~ 132 (290)
T 3mt0_A 100 D---NPLKKAILTPDDWKL-LRFAPCPVLMTKTARPW 132 (290)
T ss_dssp S---CTTSTTSCCHHHHHH-HHHCSSCEEEECCCSCS
T ss_pred C---CchhhcccCHHHHHH-HhcCCCCEEEecCCCCC
Confidence 3 22222 256665544 56788999999755444
No 71
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=56.07 E-value=11 Score=38.46 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.+...+.|+ .++-.|+++.+-+...+.......+
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi--~vigPNc~Gii~~~~~~~~~~~~~~ 141 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS--RLIGGNCPGIISAEETKIGIMPGHV 141 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEEESSSCEEEETTTEEEESSCGGG
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEeCCCCeEEcCCCceeEEcccCC
Confidence 34788877788888889999999887766667777665555566677777777 4666666665555433333222223
Q ss_pred ecCC--CeecccchHHHHHH--HHhCCCCeEee
Q 006164 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLVC 562 (658)
Q Consensus 534 laNG--~VvNKiGT~~lAl~--Ak~~~VPVyV~ 562 (658)
..-| +++++.||+..+++ +...++.|--+
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~ 174 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQAGLGTTTT 174 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 3334 57899999988876 66778887543
No 72
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=55.89 E-value=16 Score=37.55 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=70.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.+|.+...+.|+ .++-.|+++.+-+...+.......+
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~ 147 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV--KIIGPNTPGIASPKVGKLGIIPMEV 147 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEECCCGGG
T ss_pred CCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCceeeccCcceeeecccCC
Confidence 34788878788888889999999887766666776665555666677777787 4665666555544333332222223
Q ss_pred ecCC--CeecccchHHHHH--HHHhCCCCeEee
Q 006164 534 LSNG--TVCSRVGTACVAM--VAYGFHIPVLVC 562 (658)
Q Consensus 534 laNG--~VvNKiGT~~lAl--~Ak~~~VPVyV~ 562 (658)
..-| +++++.||+..++ .+...++.|--+
T Consensus 148 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~ 180 (294)
T 2yv1_A 148 LKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTC 180 (294)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCeEEE
Confidence 3334 5789999998887 456778887643
No 73
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=55.77 E-value=9.4 Score=41.12 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=42.2
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
..|.+++-++.. +-..++.+|.||.|=-++- .....----+.||-+||.|+|||+++|.+..
T Consensus 269 ~~Gi~~v~~~~~------------l~~~l~~ADLVITGEG~~D--~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~ 330 (383)
T 3cwc_A 269 RRGIEIVTDALH------------LEACLADADLVITGEGRID--SQTIHGKVPIGVANIAKRYNKPVIGIAGSLT 330 (383)
T ss_dssp ECHHHHHHHHTT------------HHHHHHHCSEEEECCEESC--C----CHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ccHHHHHHHHhC------------hHhhhcCCCEEEECCCCCc--CcCCCCcHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 357777655533 3455778999999986662 3333333446788899999999999998663
No 74
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=55.74 E-value=6.1 Score=38.94 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCCCEEEe-eCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc------hHHHHHHHHHhCCCC------
Q 006164 441 DRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVIVDSRPKH------EGKLLLRRLVRKGLS------ 507 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT-~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~------EG~~La~eL~~~GI~------ 507 (658)
++.|+..++..|+||++|-. +|-.+.|-.++. ++.+ .+..|+-... +|. .-..|.+.|-.
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIGiP~~va~~~~-----~~~v-~l~~E~G~~g~~p~p~~~~-~d~~~in~G~~~~t~~~ 74 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIGLPTLVANEVS-----GMNI-VFQSENGLLGIGAYPLEGS-VDADLINAGKETITVVP 74 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTTGGGGGGGGGS-----SSCC-EEEETTTEEEECCCCCTTC-CCTTCBCTTSBBCCEEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCChHHHHHHhcc-----CCcE-EEEeccceecCcCCCCccc-cCHhHeecCCceeeecC
Confidence 35789999999999986543 443455544443 4443 3344544222 111 11334444532
Q ss_pred EEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeec
Q 006164 508 CTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 508 vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvN 541 (658)
..-+.|++-.+ ++. ++|..|+||--|-.+|++.|
T Consensus 75 ~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~ 111 (207)
T 3rrl_B 75 GASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLAN 111 (207)
T ss_dssp EEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEEC
T ss_pred CceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccc
Confidence 23345554433 444 69999999999999999875
No 75
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=55.62 E-value=28 Score=34.31 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=46.7
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEc----------chHHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (658)
.||.-|+++.++.+|.... .|..++|..+= .+|...|.+.| .+.||++.++. |..+...++ ++
T Consensus 9 avl~SG~Gsnl~all~~~~-~~~~~eI~~Vis~~~~a~~~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~ 84 (215)
T 3tqr_A 9 VVLISGNGTNLQAIIGAIQ-KGLAIEIRAVISNRADAYGLKRA---QQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDP 84 (215)
T ss_dssp EEEESSCCHHHHHHHHHHH-TTCSEEEEEEEESCTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcHHHHHHHHHHH-cCCCCEEEEEEeCCcchHHHHHH---HHcCCCEEEeCccccCchhHhHHHHHHHHHhcCC
Confidence 3666689999977665544 34445555443 37777776554 45799998873 334445555 58
Q ss_pred cEEEEcc-eeEe
Q 006164 524 TRVFLGA-SSVL 534 (658)
Q Consensus 524 d~VivGA-daVl 534 (658)
|.+++-+ -.|+
T Consensus 85 Dliv~agy~~il 96 (215)
T 3tqr_A 85 KLIVLAGFMRKL 96 (215)
T ss_dssp SEEEESSCCSCC
T ss_pred CEEEEccchhhC
Confidence 8887754 3444
No 76
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=55.59 E-value=56 Score=35.58 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=71.3
Q ss_pred ccCCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCC-c-hHHHHHHHHHhCCCCEEEE-cc----hHHHHHhhhc
Q 006164 452 IRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPK-H-EGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEV 523 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~-~-EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~V 523 (658)
+..+.+||..|-+.-+...| +.+.++|.. +|+++.-++. . .-.++..+|...|..++++ +| .++..++.++
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 45677888888776554333 444455543 4555543332 2 2356678899999888877 34 3566677665
Q ss_pred ------cEEEEcceeEecCCCe-------------ecccchHHHHHHHHhCCCCeEeeccc
Q 006164 524 ------TRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 524 ------d~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
|.||-.|- +..+|.+ .|-.|+..+.-+++.++..++|++-+
T Consensus 302 ~~~g~ld~VIh~AG-~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 302 GDDVPLSAVFHAAA-TLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CTTSCEEEEEECCC-CCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred HhcCCCcEEEECCc-cCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 77776653 3334432 25678888888888888888887655
No 77
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=55.33 E-value=80 Score=31.24 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=68.0
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC---------CCC---------chHHHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK---------HEGKLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES---------RP~---------~EG~~La~eL~~~- 504 (658)
++..+.+.+. +..||..|.+.+=..++..+...|.. ++.++|. |-. .....++.+|.+.
T Consensus 18 ~g~~~q~~l~-~~~VlvvG~GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 18 IALDGQQKLL-DSQVLIIGLGGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp THHHHHHHHH-TCEEEEECCSTTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-cCcEEEEccCHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 4556666665 57888998865444455666666764 4444442 221 1223455677664
Q ss_pred -CCCEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++.++.+. +..+..+++++|.||...|..- --+.+.-.|+.+++|++.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMA---------TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 56666653 2345667889999988776432 23567778888999987654
No 78
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=55.16 E-value=74 Score=32.02 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=54.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 525 (658)
.+++|.|-+.++..++..+.+.| -+|++.+ |.+-|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 72 ~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 147 (393)
T 2huf_A 72 TFCLSASGHGGMEATLCNLLEDG--DVILIGH--TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV 147 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEcCcHHHHHHHHHHHHhCCC--CEEEEEC--CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcE
Confidence 35677777777766666554333 3566654 334443333444567888877741 12333333 3555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++ .+---..|.+.. --.++-+|+.|++.+++
T Consensus 148 v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~li~ 179 (393)
T 2huf_A 148 LFL-TQGDSSTGVLQG---LEGVGALCHQHNCLLIV 179 (393)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-EccCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 554 222223355444 24577788999987776
No 79
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=55.15 E-value=99 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.6
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|.|++|+++ +| +-. -.|+..-. +.++.++||+|+
T Consensus 106 ~~dliV~G~~~---~~-~~~~~~Gs~~~~-v~~~~~~pVlvv 142 (143)
T 3fdx_A 106 PADLVIIASHR---PD-ITTYLLGSNAAA-VVRHAECSVLVV 142 (143)
T ss_dssp TCSEEEEESSC---TT-CCSCSSCHHHHH-HHHHCSSEEEEE
T ss_pred CCCEEEEeCCC---CC-CeeeeeccHHHH-HHHhCCCCEEEe
Confidence 69999999984 33 322 25665444 456778999986
No 80
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=55.09 E-value=41 Score=34.06 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=58.5
Q ss_pred CC-CEEEeeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHh
Q 006164 454 DG-DVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII 520 (658)
Q Consensus 454 dg-dvILT~g~SsaV~~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM 520 (658)
.. .+++|.|.+.++..+++.+.+.|. +-+|++. .|.+.+... .+...|+.+..+... .+-..+
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~--~p~~~~~~~--~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~ 165 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSP--NPFYQIYEG--ATLLGGGEIHFANCPAPSFNPDWRSISEEV 165 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEE--ESCCHHHHH--HHHHTTCEEEEEECCTTTCCCCGGGSCHHH
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEc--CCCcHhHHH--HHHHcCCEEEEeecCCCCCccCHHHHHHhh
Confidence 45 788888888888766666544332 1355553 456655543 345578888777521 222222
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 -~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++.+|++- .---..|.++..---..++-+|+.|++.+++
T Consensus 166 ~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 166 WKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp HHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred ccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 245555552 2222335555444444577789999987776
No 81
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=54.74 E-value=93 Score=32.11 Aligned_cols=100 Identities=17% Similarity=0.075 Sum_probs=58.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc----------c-hHHHHHhh--
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------I-NAISYIIH-- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~----------D-sAv~~iM~-- 521 (658)
..+++|-|.+.+++.+|+.+. +..-+|++.+ |.+.|...+ +...|..+..+. | ..+-..+.
T Consensus 120 ~~v~~~~g~~ea~~~a~~~~~--~~gd~Vi~~~--~~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~ 193 (421)
T 3l8a_A 120 EDILFIDGVVPAISIALQAFS--EKGDAVLINS--PVYYPFART--IRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN 193 (421)
T ss_dssp GGEEEESCHHHHHHHHHHHHS--CTEEEEEEEE--SCCHHHHHH--HHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT
T ss_pred HHEEEcCCHHHHHHHHHHHhc--CCCCEEEECC--CCcHHHHHH--HHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc
Confidence 357777777778877776664 3334566543 666664433 344676665553 1 23444443
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++.+|++ ..---..|.++.+----.|+-+|++|++.+++
T Consensus 194 ~~~~vil-~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 194 NVKIYLL-CSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4556655 33333345555555555677789999998776
No 82
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=54.48 E-value=86 Score=32.11 Aligned_cols=111 Identities=22% Similarity=0.284 Sum_probs=59.4
Q ss_pred HHhccC-CCEEEee--CChHHHH--HHHHHHHH---cCCeeEEEEe-CCC---CCc-hHHHHHHHHHhCCCCEE-EEcch
Q 006164 449 VTKIRD-GDVLLTY--GSSSAVE--MILQHAHE---LGKQFRVVIV-DSR---PKH-EGKLLLRRLVRKGLSCT-YTHIN 514 (658)
Q Consensus 449 ~~~I~d-gdvILT~--g~SsaV~--~vL~~A~e---~gk~f~ViV~-ESR---P~~-EG~~La~eL~~~GI~vT-lI~Ds 514 (658)
.++|.. +-++|-- |+-++=+ .+-+-|.| ...-+++.|. |.+ |.. +-.+.+++|.+.|+.+- |+.|+
T Consensus 66 ~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd 145 (265)
T 1wv2_A 66 LDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD 145 (265)
T ss_dssp ----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC
T ss_pred HhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345544 6677743 4333322 23344555 2234677776 444 322 33455799999999988 77766
Q ss_pred -HHHHHhhhccEEEEcceeEecCCCee--c--ccchHHHHHHHHhCCCCeEeecc
Q 006164 515 -AISYIIHEVTRVFLGASSVLSNGTVC--S--RVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 515 -Av~~iM~~Vd~VivGAdaVlaNG~Vv--N--KiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
..+.-+.++ |++.|+.-|..+ + -.--..|..+.+..++||++-+.
T Consensus 146 ~~~akrl~~~-----G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGG 195 (265)
T 1wv2_A 146 PIIARQLAEI-----GCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAG 195 (265)
T ss_dssp HHHHHHHHHS-----CCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESC
T ss_pred HHHHHHHHHh-----CCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCC
Confidence 445555532 444444422210 0 01134667777788999998543
No 83
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=54.07 E-value=1e+02 Score=26.26 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=34.1
Q ss_pred HHhCCCCE--EEE-cchHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 501 LVRKGLSC--TYT-HINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 501 L~~~GI~v--TlI-~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.+.|+++ +.+ .......++. ++|.|++|++ . +| ..+.|+. ..-+.++.++||+|+-
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~--~-~~--~~~lgs~-~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH--Q-DF--WSKLMSS-TRQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC--C-CC--HHHHHHH-HHHHHTTCCSEEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC--C-ch--hhhhcch-HHHHHhcCCCCEEEee
Confidence 34568875 233 2333333333 4999999987 2 22 3446743 3345677789999984
No 84
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=53.55 E-value=21 Score=36.61 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 532 (658)
..|..|..+|+-..+...+ .+.++|+|+|-.|.. |. +++.+.-++++++|.||+=..+
T Consensus 139 ~~g~kV~vIG~~P~i~~~l------~~~~~v~V~d~~p~~------------g~----~p~~~~e~ll~~aD~viiTGsT 196 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLL------EPICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHH------TTTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCCHHHHHHH------hCCCCEEEEECCCCC------------CC----CChHHHHHHhhcCCEEEEEeee
Confidence 3578999999987665433 235799999999872 32 3788899999999999998877
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEeeccccccccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+. ||++- ..+.+ |+ ....++++.||.-+.+.
T Consensus 197 lv-N~Ti~-----~lL~~-~~-~a~~vvl~GPS~p~~P~ 227 (270)
T 2h1q_A 197 VV-DKTLP-----RLLEL-SR-NARRITLVGPGTPLAPV 227 (270)
T ss_dssp HH-HTCHH-----HHHHH-TT-TSSEEEEESTTCCCCGG
T ss_pred ee-cCCHH-----HHHHh-Cc-cCCeEEEEecChhhhHH
Confidence 65 54432 22322 33 45699999999887774
No 85
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=53.45 E-value=61 Score=32.69 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=56.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 525 (658)
.+++|.|.+.++..++..+.+.|. +|++. .|.+.+..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd--~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGD--RVLIA--VNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC--eEEEE--cCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 366776666777666655544343 55554 3555555433455667988877752 12333333 3566
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++ .+---..|.++. --.++-+|+.|++.++|
T Consensus 147 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 147 LFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIV 178 (396)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 665 332234466555 23567788899987665
No 86
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=53.17 E-value=41 Score=33.28 Aligned_cols=102 Identities=13% Similarity=0.081 Sum_probs=57.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHHhhh-----
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIHE----- 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~~----- 522 (658)
..+++|.|-+.++..+++.+.+.| -+|++. .|.+.+...+..+...|+++..+... .+-..+.+
T Consensus 67 ~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~ 142 (359)
T 1svv_A 67 ADVHFISGGTQTNLIACSLALRPW--EAVIAT--QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEH 142 (359)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTT--EEEEEE--TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTT
T ss_pred ccEEEeCCchHHHHHHHHHHhCCC--CEEEEc--ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhcc
Confidence 457778888888877766664333 356654 45554443322356679988888532 33333433
Q ss_pred ---ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 523 ---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 ---Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+..|++- . ....|.++..-=-..++-+|+.|++.+++=
T Consensus 143 ~~~~~~v~~~-~-~~ptG~~~~~~~l~~i~~~~~~~~~~li~D 183 (359)
T 1svv_A 143 MVIPKLVYIS-N-TTEVGTQYTKQELEDISASCKEHGLYLFLD 183 (359)
T ss_dssp SCEEEEEEEE-S-SCTTSCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEE-c-CCCCceecCHHHHHHHHHHHHHhCCEEEEE
Confidence 3445443 2 223355554311234667889999887763
No 87
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=52.88 E-value=1.8e+02 Score=28.78 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=51.4
Q ss_pred CEEEeeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcc--------hHHHHHhhh
Q 006164 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI--------NAISYIIHE 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~----e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~D--------sAv~~iM~~ 522 (658)
.+++|.|.+.++..++..+. +.|. +|++.+ |.+.+...+ ..|...|+.+..+.. ..+-..+.+
T Consensus 62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd--~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4eb5_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEET--TCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEcCchHHHHHHHHHHHHhhccCCCC--EEEECC--CcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence 56777777777766665554 3443 566543 344444333 445567998888752 122222222
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCC
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VP 558 (658)
=.++|+-.+--...|.++. --.++-+|++|++.
T Consensus 138 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 170 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL 170 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE
T ss_pred CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE
Confidence 1233333332223355544 24677788999887
No 88
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=52.59 E-value=61 Score=32.76 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=56.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 525 (658)
.+++|.|-+.++..++..+.+.|. +|++. .|.+.|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 162 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGD--VVLIG--VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAI 162 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEeCchHHHHHHHHHhccCCCC--EEEEE--cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceE
Confidence 467777777778766666644343 56654 3666664444556668888877752 23333333 3555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++- .---..|.+.. + -.++-+|++|++.+++
T Consensus 163 v~~~-~~~nptG~~~~-l--~~i~~l~~~~~~~li~ 194 (393)
T 1vjo_A 163 LALV-HAETSTGARQP-L--EGVGELCREFGTLLLV 194 (393)
T ss_dssp EEEE-SEETTTTEECC-C--TTHHHHHHHHTCEEEE
T ss_pred EEEe-ccCCCcceecc-H--HHHHHHHHHcCCEEEE
Confidence 5542 22233455543 2 3567788889987766
No 89
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=52.06 E-value=1.4e+02 Score=29.65 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=56.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHc-----------CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHEL-----------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------- 514 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~-----------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------- 514 (658)
...+++|.|-+.++..++..+... ++.-+|++.+ |.+.+..- .+...|+.+..+...
T Consensus 86 ~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~d~~ 161 (397)
T 3f9t_A 86 DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI--TAHFSFEK--GREMMDLEYIYAPIKEDYTIDEK 161 (397)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET--TCCTHHHH--HHHHHTCEEEEECBCTTSSBCHH
T ss_pred CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC--cchhHHHH--HHHHcCceeEEEeeCCCCcCCHH
Confidence 345677777777777666666543 1234566643 44544332 233358888888532
Q ss_pred HHHHHhhh--ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 515 AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 515 Av~~iM~~--Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+-..+.+ ..+|++- .---..|.+.. --.|+-+|+.|++.+++=
T Consensus 162 ~l~~~i~~~~~~~v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~D 207 (397)
T 3f9t_A 162 FVKDAVEDYDVDGIIGI-AGTTELGTIDN---IEELSKIAKENNIYIHVD 207 (397)
T ss_dssp HHHHHHHHSCCCEEEEE-BSCTTTCCBCC---HHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhcCCeEEEEE-CCCCCCCCCCC---HHHHHHHHHHhCCeEEEE
Confidence 33334443 4444432 22233444432 345777899999987763
No 90
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=51.99 E-value=57 Score=29.49 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=58.8
Q ss_pred cCCCEEEeeCChH-------HHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-E---cchHHHHH
Q 006164 453 RDGDVLLTYGSSS-------AVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-T---HINAISYI 519 (658)
Q Consensus 453 ~dgdvILT~g~Ss-------aV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTl-I---~DsAv~~i 519 (658)
.+..+|+..|+-. .+..++.... +.+..++++++-..+...-..+-..+.+.| .+++ + ....+..+
T Consensus 34 ~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~ 112 (200)
T 2bfw_A 34 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 112 (200)
T ss_dssp CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHH
Confidence 3455777777533 2223344443 444578888887654112234444555666 7777 2 34478889
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|..+|.+|+-... .| .| ...+=|-.+|+||++.
T Consensus 113 ~~~ad~~l~ps~~---e~-----~~--~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 113 YGSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 145 (200)
T ss_dssp HTTCSEEEECCSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHCCEEEECCCC---CC-----cc--HHHHHHHHCCCCEEEe
Confidence 9999999885432 22 23 3345667789998775
No 91
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=51.89 E-value=99 Score=31.57 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=54.1
Q ss_pred CCCEEE--eeCChHHHHHHH--HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHH
Q 006164 454 DGDVLL--TYGSSSAVEMIL--QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYI 519 (658)
Q Consensus 454 dgdvIL--T~g~SsaV~~vL--~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~i 519 (658)
...+++ |.|-+.+++.++ ..+...|. +|++.+ |.+.+.. ..+...|+++..+.. ..+-..
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd--~Vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 169 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDK--LVYLSK--PTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCC--EEEEeC--CCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHH
Confidence 356777 887777775542 23333333 455553 5555543 334456888776642 123333
Q ss_pred hhh---ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 520 IHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M~~---Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+ .+++++=+.--...|.+++.-=-..++-+|+.|++.+++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~ 214 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 214 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 333 245544333333345444433233567788999987765
No 92
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=51.67 E-value=78 Score=30.42 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHcCCeeEEEEeCCCCCc---hHHHHHHHHHhCCCCEEEE--cchHHHHHhh---hccEEEEcceeEecCCCeecccc
Q 006164 473 HAHELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYT--HINAISYIIH---EVTRVFLGASSVLSNGTVCSRVG 544 (658)
Q Consensus 473 ~A~e~gk~f~ViV~ESRP~~---EG~~La~eL~~~GI~vTlI--~DsAv~~iM~---~Vd~VivGAdaVlaNG~VvNKiG 544 (658)
.|...+-.++|+-+...+.. .-.++...|.+.|+++++. ..+..-.++. +.|.+++|+ .+ .+- -.|
T Consensus 177 la~~~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~dliV~G~-~~--~~~---~~G 250 (268)
T 3ab8_A 177 LARALGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPGDLLALGA-PV--RRL---VFG 250 (268)
T ss_dssp HHHHHTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTTEEEEEEC-CC--SCC---SSC
T ss_pred hhhcCCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhCCEEEECC-cc--ccc---Eec
Confidence 34344656666654433211 1123456788889988764 3333333333 449999999 11 111 235
Q ss_pred hHHHHHHHHhCCCCeEee
Q 006164 545 TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 545 T~~lAl~Ak~~~VPVyV~ 562 (658)
+..-.+ .++..+||+|+
T Consensus 251 s~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 251 STAERV-IRNAQGPVLTA 267 (268)
T ss_dssp CHHHHH-HHHCSSCEEEE
T ss_pred cHHHHH-HhcCCCCEEEe
Confidence 554444 45678999986
No 93
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=51.50 E-value=71 Score=35.55 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=69.2
Q ss_pred HHHHh--ccCCCEEEeeCCh----HHHHHHHHHHHHcC-CeeEEEEeCCCCCchHH------------------HHHHHH
Q 006164 447 HAVTK--IRDGDVLLTYGSS----SAVEMILQHAHELG-KQFRVVIVDSRPKHEGK------------------LLLRRL 501 (658)
Q Consensus 447 ~a~~~--I~dgdvILT~g~S----saV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~------------------~La~eL 501 (658)
.|+++ |+||++|...|+. .++..++....+++ +.++++.....+...|. ...+++
T Consensus 54 EAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g~~~r~~ 133 (519)
T 2hj0_A 54 EAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDKVGAA 133 (519)
T ss_dssp HHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCHHHHHHH
T ss_pred HHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCCcHHHHH
Confidence 45556 8999999999875 23445555555534 45777765322221110 112345
Q ss_pred HhCCC---CEEEEcchHHHHHhh----hccEEEEcceeEecCCCee---ccc--chHHHHHHHHhCCCCeEee
Q 006164 502 VRKGL---SCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVC---SRV--GTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 502 ~~~GI---~vTlI~DsAv~~iM~----~Vd~VivGAdaVlaNG~Vv---NKi--GT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.|- |+.|-......+++. .+|..|+.|...-.+|.+. .+. |+...+.++..+..-|++-
T Consensus 134 i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIaE 206 (519)
T 2hj0_A 134 ISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIV 206 (519)
T ss_dssp HHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEEE
T ss_pred HHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEEE
Confidence 55563 555543333666765 4899999999999999987 332 3445555555555545543
No 94
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=51.45 E-value=55 Score=33.91 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=54.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCCEEEEcchH---HHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vTlI~DsA---v~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..+|..+.+.| -+|++. .|.+.|. .+. ..+...|+.++++.... +-..+. ++..|++
T Consensus 83 ~~~~~~sGt~A~~~al~~~~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 157 (392)
T 3qhx_A 83 FGRAFSSGMAAADCALRAMLRPG--DHVVIP--DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWV- 157 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEe--CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEE-
Confidence 45666655667766666554333 355553 4555443 333 34466899999996433 333333 3444443
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..+. ..|.+.. --.|+-+|+.|++.++|=
T Consensus 158 -~~~~nptG~~~~---l~~i~~la~~~g~~li~D 187 (392)
T 3qhx_A 158 -ETPTNPLLSIAD---IAGIAQLGADSSAKVLVD 187 (392)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred -ECCCCCCcEEec---HHHHHHHHHHcCCEEEEE
Confidence 2222 2233322 356788899999988763
No 95
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=51.05 E-value=21 Score=31.89 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=50.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
.++.+|.|+|-.|... ..+...|.+.|..|+.+..+ |+..+-. ..|.||+ |-.+++.+ | +.++-.-+
T Consensus 6 ~r~~rILiVdD~~~~~-~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~lr 76 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA-MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADILA 76 (123)
T ss_dssp CCCCCEEEESSSTTTS-HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHHH
Confidence 4678999999888762 23447788899988654433 3333322 5788887 45555432 3 34555556
Q ss_pred hCCCCeEeecc
Q 006164 554 GFHIPVLVCCE 564 (658)
Q Consensus 554 ~~~VPVyV~ae 564 (658)
..++||+++..
T Consensus 77 ~~~ipvI~lTa 87 (123)
T 2lpm_A 77 ERNVPFIFATG 87 (123)
T ss_dssp HTCCSSCCBCT
T ss_pred cCCCCEEEEec
Confidence 78999988764
No 96
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=51.01 E-value=1.2e+02 Score=29.56 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=57.1
Q ss_pred EEEeeCChH----HHHHHHHHHHHcCCeeEEEEeCCCCC-ch-HHHHHHHHHhCCCCEEEE--cchHHHHHhh-----hc
Q 006164 457 VLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPK-HE-GKLLLRRLVRKGLSCTYT--HINAISYIIH-----EV 523 (658)
Q Consensus 457 vILT~g~Ss----aV~~vL~~A~e~gk~f~ViV~ESRP~-~E-G~~La~eL~~~GI~vTlI--~DsAv~~iM~-----~V 523 (658)
+++-+..|. ++...+..|...+..++|+-+...+. .+ -.++...|.+.|+++... ..+....++. ++
T Consensus 173 Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 252 (294)
T 3loq_A 173 VLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINA 252 (294)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCc
Confidence 344445553 34444444444566677665543332 11 234457788899986544 3333333333 68
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecc
Q 006164 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
|.+++|+..- |.+-. -.|+..-. +.++-.+||+|+=+
T Consensus 253 dLlV~G~~~~---~~~~~~~~Gs~~~~-vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 253 TTIFMGSRGA---GSVMTMILGSTSES-VIRRSPVPVFVCKR 290 (294)
T ss_dssp SEEEEECCCC---SCHHHHHHHCHHHH-HHHHCSSCEEEECS
T ss_pred CEEEEeCCCC---CCccceeeCcHHHH-HHhcCCCCEEEECC
Confidence 9999999752 22222 14544433 45677899999843
No 97
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=50.90 E-value=44 Score=32.77 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=57.1
Q ss_pred CCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCC----chHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEE
Q 006164 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPK----HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRV 526 (658)
Q Consensus 455 gdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~----~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~V 526 (658)
..+||..|-+..+. .+++.+.+.| ++|+++.-++. .+-...+..|...|+.+.... | ..+..+++.+|.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 34688888654332 2234444556 46666544332 122233456667777654332 2 3556667766666
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCC-CCeEee
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~ 562 (658)
|.-| +..+-.|+..++-+|+..+ ++-+|.
T Consensus 82 i~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 82 ISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 5543 3344568888888899888 888774
No 98
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=50.73 E-value=40 Score=33.47 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=56.0
Q ss_pred EEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEccee
Q 006164 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAda 532 (658)
+||..|-+..+. .+++.+.++| ++|+++.-.+. +-.....+|...|+.+.... | ..+..++..+|.||.-|
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a-- 87 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISAL-- 87 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC--
T ss_pred eEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECC--
Confidence 688887653332 2334444556 45666544332 22333456677787664432 2 35566676677666543
Q ss_pred EecCCCeecccchHHHHHHHHhCC-CCeEee
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~ 562 (658)
+..+-.++..+.-+|+..+ +..+|.
T Consensus 88 -----~~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 88 -----AFPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp -----CGGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred -----chhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 2333567888888888887 887774
No 99
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=50.58 E-value=25 Score=38.69 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=61.7
Q ss_pred HHHHHHhccCCCEEEeeCChH---HHHHHHHHHHH--cCCeeEEEEeC---------CC----------CCchHHHHHHH
Q 006164 445 VKHAVTKIRDGDVLLTYGSSS---AVEMILQHAHE--LGKQFRVVIVD---------SR----------PKHEGKLLLRR 500 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~Ss---aV~~vL~~A~e--~gk~f~ViV~E---------SR----------P~~EG~~La~e 500 (658)
++.++++|++|++|.+-|... .+...|.+-.+ .-+.+++|..- .. +++.| ...+.
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~-~~~R~ 107 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVT-AVERA 107 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCC-HHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCC-hhHHH
Confidence 345778999999999987653 23233332222 23456776421 11 24445 33566
Q ss_pred HHhCC--------CCEEEEcchHHHHHhh---hccEEEEcceeEecCCCeec
Q 006164 501 LVRKG--------LSCTYTHINAISYIIH---EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 501 L~~~G--------I~vTlI~DsAv~~iM~---~Vd~VivGAdaVlaNG~VvN 541 (658)
+.+.| +..+-+..+.+..++. .+|.+|+.|...-.+|.+.-
T Consensus 108 ~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~ 159 (455)
T 3qli_A 108 LIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL 159 (455)
T ss_dssp HHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC
T ss_pred HHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE
Confidence 77777 4555556788888875 58999999999999997754
No 100
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=50.53 E-value=1.1e+02 Score=30.84 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCEEEeeCChHHHHHHHHHHH-HcCCeeEEEEeCCCCCchHHHH-HHHHHh-CCCCEEEEcch---------HHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLL-LRRLVR-KGLSCTYTHIN---------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~-e~gk~f~ViV~ESRP~~EG~~L-a~eL~~-~GI~vTlI~Ds---------Av~~iM~- 521 (658)
..+++|.|.+.++..++.... ..+..-+|++.+ |.+.+... ...|.+ .|+.+.++... .+-..+.
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~--~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~ 164 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSR--LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK 164 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEET--TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcC--CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence 457777777777754443331 112223566643 44444322 233333 58888777422 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++.+|++ ...--..|.+.. --.|+-+|+.|++.|+|
T Consensus 165 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (406)
T 3cai_A 165 STRLVAV-NSASGTLGGVTD---LRAMTKLVHDVGALVVV 200 (406)
T ss_dssp TEEEEEE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-eCCcCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333433 222223355554 25677889999987776
No 101
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=50.52 E-value=36 Score=31.84 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=58.4
Q ss_pred CEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c----hHHHHHhhhccEEEEc
Q 006164 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-D----sAv~~iM~~Vd~VivG 529 (658)
.+||..|-+.-+...| +.+.++| .+|+++.-++... ....-.++++. | ..+..++..+|.||--
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--------~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKI--------KIENEHLKVKKADVSSLDEVCEVCKGADAVISA 74 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGC--------CCCCTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccc--------hhccCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence 4788888776664444 4444444 6788776554321 00012234432 2 3456677788888876
Q ss_pred ceeEecCCC--eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 530 ASSVLSNGT--VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 530 AdaVlaNG~--VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
|-....+-. -.|-.|+..+.-+|+.++++-+|...+
T Consensus 75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 633322211 127889999999999999876666554
No 102
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=50.46 E-value=59 Score=32.67 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c-hHHHHHhh-hccEEEEcce
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-NAISYIIH-EVTRVFLGAS 531 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-D-sAv~~iM~-~Vd~VivGAd 531 (658)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.... +...|+.+..+. | ..+-..+. ++..|++ ..
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~~--~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~-~~ 162 (370)
T 2z61_A 90 DNIIITGGSSLGLFFALSSIIDDG--DEVLIQN--PCYPCYKNF--IRFLGAKPVFCDFTVESLEEALSDKTKAIII-NS 162 (370)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSSHHHHHHHCCSSEEEEEE-ES
T ss_pred hhEEECCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEeCCCHHHHHHhcccCceEEEE-cC
Confidence 467888887888876666554333 3565543 555554433 455788888775 2 22333332 3444554 22
Q ss_pred eEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
---..|.++..- ++-+|++|++.+++
T Consensus 163 p~nptG~~~~~~----l~~~~~~~~~~li~ 188 (370)
T 2z61_A 163 PSNPLGEVIDRE----IYEFAYENIPYIIS 188 (370)
T ss_dssp SCTTTCCCCCHH----HHHHHHHHCSEEEE
T ss_pred CCCCcCcccCHH----HHHHHHHcCCEEEE
Confidence 212346666554 77788999987665
No 103
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=50.35 E-value=25 Score=34.72 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=44.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEc-----chHHHHHhh--hccEEE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIH--EVTRVF 527 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~-----DsAv~~iM~--~Vd~Vi 527 (658)
.||..|.++.+..+|... +.+. ..+|..+= .+|...|.+.| .+.|||+.++. +..+...++ ++|.++
T Consensus 12 ~vl~SG~gsnl~all~~~-~~~~~~~~I~~Vis~~~~a~~l~~A---~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dliv 87 (215)
T 3kcq_A 12 GVLISGRGSNLEALAKAF-STEESSVVISCVISNNAEARGLLIA---QSYGIPTFVVKRKPLDIEHISTVLREHDVDLVC 87 (215)
T ss_dssp EEEESSCCHHHHHHHHHT-CCC-CSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEE
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCcEEEEEEeCCcchHHHHHH---HHcCCCEEEeCcccCChHHHHHHHHHhCCCEEE
Confidence 578888999987766544 4443 35554433 37777775544 56799998864 234555555 578777
Q ss_pred Ecc
Q 006164 528 LGA 530 (658)
Q Consensus 528 vGA 530 (658)
+-+
T Consensus 88 lag 90 (215)
T 3kcq_A 88 LAG 90 (215)
T ss_dssp ESS
T ss_pred EeC
Confidence 654
No 104
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=50.32 E-value=91 Score=31.11 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=57.6
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hccEE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~V 526 (658)
+++|.|-+.++..+++.+.+.| -+|++.+ +.+-|..+...+...|+.+..+.. ..+-..+. ++..|
T Consensus 77 v~~~~gg~~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v 152 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPG--DSFLTGT--NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEE
Confidence 6777888888877776664333 3566653 444444555666778988877751 23333444 35555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++- .---..|.+.. --.|+-+|+.|++.|++
T Consensus 153 ~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 153 FLV-HGESSTGVVQP---LDGFGELCHRYQCLLLV 183 (393)
T ss_dssp EEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEe-ccCCcchhhcc---HHHHHHHHHHcCCEEEE
Confidence 443 32223454444 23577789999998776
No 105
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=50.24 E-value=28 Score=34.89 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=63.9
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhhh--ccE
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE--VTR 525 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~--Vd~ 525 (658)
.+.+||..|-+.-+.. +++.+.++|..++|++.+..+..........+.. .-.++++ .| ..+..++.. +|.
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 101 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQD-HPNYYFVKGEIQNGELLEHVIKERDVQV 101 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhcc-CCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence 4568899888765543 3445566787789998875542221111111111 1133433 22 355666776 888
Q ss_pred EEEcceeEecCCC--------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 526 VFLGASSVLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 526 VivGAdaVlaNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
||--|-....+.. -.|-.||..+.-+|+.++++-+|.+-+
T Consensus 102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 8876643322111 357789999999999999985555443
No 106
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=50.17 E-value=72 Score=32.00 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH------HHHHh----hhcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------ISYII----HEVT 524 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA------v~~iM----~~Vd 524 (658)
..+++|.|.+.++..+++.+ .| -+|++. .|.+.|... .+...|.++..+.... +..++ .++.
T Consensus 77 ~~v~~~~g~~~al~~~~~~~--~g--d~vl~~--~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 148 (364)
T 1lc5_A 77 SWILAGNGETESIFTVASGL--KP--RRAMIV--TPGFAEYGR--ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 148 (364)
T ss_dssp GGEEEESSHHHHHHHHHHHH--CC--SEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCC
T ss_pred HHEEECCCHHHHHHHHHHHc--CC--CeEEEe--CCCcHHHHH--HHHHcCCeEEEEeCCcccccchhHHHHHhccCCCC
Confidence 46788888888886666555 45 355554 355655443 3345688877775321 11122 2344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.|++ .+--...|.++..-=--.++-+|++|++.+++
T Consensus 149 ~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 184 (364)
T 1lc5_A 149 CLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184 (364)
T ss_dssp EEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEE
Confidence 4544 22222234444332234566788999998776
No 107
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=50.12 E-value=21 Score=40.84 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=45.4
Q ss_pred CEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CC--CCEEEEcchHHHHHhh-hccEEE
Q 006164 456 DVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG--LSCTYTHINAISYIIH-EVTRVF 527 (658)
Q Consensus 456 dvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~G--I~vTlI~DsAv~~iM~-~Vd~Vi 527 (658)
.+||..|.++ .+...|+.+.+.+++++||.+|-.|. ...++++.+ .| =.+|+|.-.+=-.-++ +||.+|
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~---A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN---AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH---HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH---HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 5788998765 66677888888889999999998874 334544433 33 3578876444333333 566665
No 108
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=50.07 E-value=31 Score=30.89 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=35.5
Q ss_pred HHHHhCCCCEEE---Ec-ch---HHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeec
Q 006164 499 RRLVRKGLSCTY---TH-IN---AISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 499 ~eL~~~GI~vTl---I~-Ds---Av~~iM~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..|...|++++. +. .. .+..+.. ++|.||+|++.- +.+-. -.|+..-- +.++..+||+|+-
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~PVlvv~ 155 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMR-VLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHH-HHHHCSSCEEEEC
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHH-HHHhCCCCEEEEc
Confidence 344556888765 32 22 2233333 799999999853 22222 25654444 4556789999984
No 109
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=49.60 E-value=60 Score=36.15 Aligned_cols=115 Identities=24% Similarity=0.355 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006164 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|...-+...+-+|+|+.+ ||+.+-+-+.+++. +.+++.+|+.+...++-+.
T Consensus 210 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 289 (551)
T 1x87_A 210 MTDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQ 289 (551)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 34567777777778888899999975 99988776666541 1134678998888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006164 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
|.+. +.+.+.+|.. ++-..|..+.-|||+ +-|..+|+-.+..|+ .||=+++-..|
T Consensus 290 ~~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 365 (551)
T 1x87_A 290 YIAR----AKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGDP 365 (551)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 8654 5666666643 444578888888886 234555666666666 47766666666
Q ss_pred C
Q 006164 491 K 491 (658)
Q Consensus 491 ~ 491 (658)
.
T Consensus 366 e 366 (551)
T 1x87_A 366 E 366 (551)
T ss_dssp H
T ss_pred H
Confidence 3
No 110
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=49.35 E-value=76 Score=32.18 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=54.6
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------hHHHHHhh--
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-- 521 (658)
..+++|.|.+.++..+++.+.+.| -+|++ ..|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 90 ~~v~~t~g~~~a~~~~~~~l~~~g--d~vl~--~~p~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~ 163 (399)
T 1c7n_A 90 DWIINTAGVVPAVFNAVREFTKPG--DGVII--ITPVYYPFFMA--IKNQERKIIECELLEKDGYYTIDFQKLEKLSKDK 163 (399)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEE--CSSCCTHHHHH--HHTTTCEEEECCCEEETTEEECCHHHHHHHHTCT
T ss_pred hhEEEcCCHHHHHHHHHHHhcCCC--CEEEE--cCCCcHhHHHH--HHHcCCEEEecccccCCCCEEEcHHHHHHHhccC
Confidence 457788777778866665553333 35555 34666665433 3456776655431 12333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ ..--...|.++..-=-..++-+|+.|++.+++
T Consensus 164 ~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 164 NNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEE-cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4445554 33222235444433234566788999998776
No 111
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=49.20 E-value=2.2e+02 Score=28.64 Aligned_cols=98 Identities=18% Similarity=0.086 Sum_probs=55.5
Q ss_pred EEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh--hccE
Q 006164 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH--EVTR 525 (658)
Q Consensus 457 vILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~--~Vd~ 525 (658)
++++.+.+ .++..++..+.+.| -+|++.+ |.+-|..+...+...|+.+..+... .+-..+. ++..
T Consensus 64 ~~~~~~s~t~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 139 (416)
T 3isl_A 64 AYPIDGTSRAGIEAVLASVIEPE--DDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKI 139 (416)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEecCcHHHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcE
Confidence 34344444 56665555553333 3666654 4555544556677789988887532 3334443 4444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|++- +---..|.+.. --.++-+|++|++.+++=
T Consensus 140 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 140 VAMV-HGETSTGRIHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp EEEE-SEETTTTEECC---CHHHHHHHHHTTCEEEEE
T ss_pred EEEE-ccCCCCceecC---HHHHHHHHHHcCCEEEEE
Confidence 4433 33333454444 356888899999988873
No 112
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=48.53 E-value=1.2e+02 Score=30.47 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=52.6
Q ss_pred CCCEEE--eeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---h-------HHHHHhh
Q 006164 454 DGDVLL--TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (658)
Q Consensus 454 dgdvIL--T~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (658)
...+++ |.|.+.+++.+++.+..-...-+|++. .|.+.|.... +...|+.+..+.. . .+-..+.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS--NPSWPNHKSV--FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE--ESCCTHHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEc--CCCchhHHHH--HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 345665 777777776655443321122355554 3666564433 3446887776642 1 2333333
Q ss_pred h---ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 E---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~---Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+ -+++++=+.---..|.++..-=-..++-+|+.|++.+++
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2 134443232222334444332223577788889987765
No 113
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=48.52 E-value=1.3e+02 Score=29.78 Aligned_cols=97 Identities=21% Similarity=0.167 Sum_probs=55.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--ch--------HHHHHhh----
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--IN--------AISYIIH---- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--Ds--------Av~~iM~---- 521 (658)
.+++|.|.+.++..++..+.+.| -+|++. .|.+.|...+ +...|+.+..+. .. .+-..+.
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 144 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKD--AWVVMD--ENCHYSSYVA--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 144 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHH--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHhCCC--CEEEEc--cCcchHHHHH--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc
Confidence 56666666677766666553333 355554 4555555444 566898888886 22 3333443
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++.. |+=..---..|.++. + -.++-+|+.|++.+++=
T Consensus 145 ~~~~~~-v~~~~~~nptG~~~~-~--~~i~~~~~~~~~~li~D 183 (371)
T 2e7j_A 145 RGEVVL-ALITYPDGNYGNLPD-V--KKIAKVCSEYDVPLLVN 183 (371)
T ss_dssp TSCEEE-EEEESSCTTTCCCCC-H--HHHHHHHHTTTCCEEEE
T ss_pred cCCeEE-EEEECCCCCCcccCC-H--HHHHHHHHHcCCeEEEE
Confidence 2323 332222233455554 2 67778899999988763
No 114
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=48.37 E-value=77 Score=32.78 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------hHHHHHhh-----
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 521 (658)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 109 ~~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 109 EDNLIFTVGSQQALDLIGKLFLDDE--SYCVLDD--PAYLGAIN--AFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN 182 (425)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHH--HHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cccEEEeccHHHHHHHHHHHhCCCC--CEEEEeC--CCcHHHHH--HHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc
Confidence 3467888888888866665543333 3555533 55555433 33457887766632 22333333
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++=..---..|.++..-=-..++-+|++|++.+++
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2334432111111224443322123577788999998775
No 115
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=48.37 E-value=83 Score=31.81 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------hHHHHHhh--
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-- 521 (658)
..+++|.|.+.++..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+.. ..+-..+.
T Consensus 88 ~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 161 (390)
T 1d2f_A 88 QTVVYGPSVIYMVSELIRQWSETG--EGVVIH--TPAYDAFYKA--IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKP 161 (390)
T ss_dssp GGEEEESCHHHHHHHHHHHSSCTT--CEEEEE--ESCCHHHHHH--HHHTTCEEEEEECEECSSSEECCHHHHHHHHTST
T ss_pred HHEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHH--HHHCCCEEEEeecccCCCccccCHHHHHHHhccC
Confidence 467788777778866665543333 355553 3556554433 3456777666531 12333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ ..--...|.++..-=-..++-+|+.|++.+++
T Consensus 162 ~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 162 ECKIMLL-CSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp TEEEEEE-ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 3445554 22222235444332224566788999998776
No 116
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=48.37 E-value=1.1e+02 Score=30.83 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=57.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh---hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH---EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~---~V 523 (658)
..+++|.|-+.++..+++.+.+.| -+|++.+ |.+-|..+...+...|+.+.++.. ..+-..+. ++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 135 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPD--DVVLNLA--SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI 135 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTC
T ss_pred CEEEEeCCchHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCC
Confidence 467777887778866666554333 3566553 444444333344557888877742 23344442 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++ .+--...|.+.. --.++-+|++|++.+++
T Consensus 136 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 136 TVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIV 169 (392)
T ss_dssp CEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEE
T ss_pred cEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEE
Confidence 55544 333333465554 34677789999987776
No 117
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=47.99 E-value=1.5e+02 Score=29.21 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCEEEEc--ch---HHHHHhhhccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeeccccc
Q 006164 505 GLSCTYTH--IN---AISYIIHEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 505 GI~vTlI~--Ds---Av~~iM~~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
|++++... .. .+..+..++|.||+|.+.- |.+-. -.|+..-.+ .++..+||+|+-+.++
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGS---GRWPGRLLGSVSSGL-LRHAHCPVVIIHDEDS 164 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCT---TCCTTCCSCHHHHHH-HHHCSSCEEEECTTCC
T ss_pred CceEEEEEecCCHHHHHHHHhcCCCEEEECCCCC---ccccccccCcHHHHH-HHhCCCCEEEEcCCcc
Confidence 88887643 22 2333334899999999752 22222 256655444 5566999999976553
No 118
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=47.94 E-value=59 Score=33.39 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=54.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH-------HHHHhh----hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH----EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA-------v~~iM~----~V 523 (658)
..+++|.|.+.++..+++.+...| -+|++.+ |.+.|.... +...|+.+..+.... +..+-. ++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHG--DTILVPN--PSYPIHIYG--AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP 173 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC
T ss_pred cCEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCc
Confidence 478888887778866666553333 3565543 666665443 334688777764221 122221 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++ ++---..|.++..---..++-+|+.|++.+++
T Consensus 174 ~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 174 RMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp SEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 55555 22212234443322224567788999987776
No 119
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=47.91 E-value=64 Score=32.84 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=52.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------hHHHHHhh------
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH------ 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------sAv~~iM~------ 521 (658)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+.
T Consensus 99 ~~v~~t~g~t~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~ 172 (407)
T 2zc0_A 99 ENIVITIGGTGALDLLGRVLIDPG--DVVITEN--PSYINTL--LAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAKG 172 (407)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHTT
T ss_pred ceEEEecCHHHHHHHHHHHhcCCC--CEEEEeC--CChHHHH--HHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhccc
Confidence 467788777778866666554333 3555543 5555543 334557887776642 23333443
Q ss_pred -hccEEEEcceeEecCCCeecccch-HHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT-~~lAl~Ak~~~VPVyV 561 (658)
++..|++=...-...|.++. ... -.++-+|+.|++.+++
T Consensus 173 ~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 173 QKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEE
Confidence 23333221111111233322 211 2677788999988776
No 120
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=47.81 E-value=1e+02 Score=33.02 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=54.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEcch---HHHHHhh-hc-cEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIH-EV-TRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~-~V-d~Viv 528 (658)
+.|++-+.+.++..+|+...+.| -+|++.+ |.+.|..- .. .+...|+.++++... .+...+. +. .+|++
T Consensus 131 ~~v~~~sG~~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 131 STLLMASGMCASTVMLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFT 206 (445)
T ss_dssp EEEEESCHHHHHHHHHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEE
Confidence 34554444456655555444334 3666655 66665432 22 356789999998632 3444444 33 44544
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..---..|.+. . --.++-+|++|+++|+|
T Consensus 207 -e~p~NptG~v~-d--l~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 207 -ESPTNPFLRCV-D--IELVSKLCHEKGALVCI 235 (445)
T ss_dssp -ESSCTTTCCCC-C--HHHHHHHHHHTTCEEEE
T ss_pred -eCCCCCCCccc-C--HHHHHHHHHHcCCEEEE
Confidence 22111234443 2 34678889999998876
No 121
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=47.69 E-value=2.3e+02 Score=28.40 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=53.0
Q ss_pred CEEEeeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcch-----HHHHH---hhh
Q 006164 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN-----AISYI---IHE 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~----e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~Ds-----Av~~i---M~~ 522 (658)
.+++|-|-+.++..+++.+. +.|.. +|++.+ +.+-+... ...+...|+.+..+... -+..+ +.+
T Consensus 82 ~v~~~~g~t~al~~~~~~l~~~~~~~gd~-~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 158 (400)
T 3vax_A 82 ELIFTSGATESNNIALLGLAPYGERTGRR-HIITSA--IEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP 158 (400)
T ss_dssp GEEEESCHHHHHHHHHHTTHHHHHHHTCC-EEEEET--TSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT
T ss_pred cEEEeCCHHHHHHHHHHHHHHhhccCCCC-EEEECc--cccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC
Confidence 57777777777766665543 34431 566653 33333222 24455679998888632 12222 221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=.++|+=..---..|.+.. --.|+-+|+.|++.+++
T Consensus 159 ~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~ 194 (400)
T 3vax_A 159 DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHV 194 (400)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEE
T ss_pred CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEE
Confidence 1233332222222344433 25677789999988776
No 122
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=47.64 E-value=41 Score=36.15 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=53.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhh-ccEEEEccee
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~-Vd~VivGAda 532 (658)
.|..|+.+|-+.+=..+-+.++++| ++|.+.|.++..+. .++..|.+.||++.+-.+.. .++.. +|.||++.-
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~--~~~~~~~d~vv~spg- 81 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNPG- 81 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECTT-
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChH--HhhcCCCCEEEECCc-
Confidence 3678888886533223334455544 78999999875432 34578999999887644422 23445 788876532
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeE
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
|-. +...-..|++.|+||+
T Consensus 82 i~~---------~~p~~~~a~~~gi~v~ 100 (451)
T 3lk7_A 82 IPY---------NNPMVKKALEKQIPVL 100 (451)
T ss_dssp SCT---------TSHHHHHHHHTTCCEE
T ss_pred CCC---------CChhHHHHHHCCCcEE
Confidence 111 1233445666666655
No 123
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=47.51 E-value=2.1e+02 Score=28.08 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCeeEEEE-eCCCCCc-------------------hHHHH----HHHHHhCCCCEEEEcc---hHHH
Q 006164 465 SAVEMILQHAHELGKQFRVVI-VDSRPKH-------------------EGKLL----LRRLVRKGLSCTYTHI---NAIS 517 (658)
Q Consensus 465 saV~~vL~~A~e~gk~f~ViV-~ESRP~~-------------------EG~~L----a~eL~~~GI~vTlI~D---sAv~ 517 (658)
.++...+..|...+..+.++. ++..|.. ++.+. ...+...|++++.... ....
T Consensus 22 ~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~g~~~~ 101 (319)
T 3olq_A 22 PALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKVIWHNRPYE 101 (319)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEecCChHH
Confidence 456666666666677776554 3433320 11112 2334567998876533 3333
Q ss_pred HHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHHhCCCCeEeecccc
Q 006164 518 YIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 518 ~iM~-----~Vd~VivGAdaVlaNG~VvNK-iGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.++. .+|.||+|.+.- +.+-.. .|+....+ .++.++||+|+-+..
T Consensus 102 ~i~~~a~~~~~DLiV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 102 AIIEEVITDKHDLLIKMAHQH---DKLGSLIFTPLDWQL-LRKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHHHHHHHTCSEEEEEEBCC-----CCSCBCCHHHHHH-HHHCSSCEEEEESSC
T ss_pred HHHHHHHhcCCCEEEEecCcC---chhhcccccccHHHH-HhcCCCCEEEecCcc
Confidence 3333 589999999853 222222 57766555 467789999997643
No 124
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=47.44 E-value=81 Score=32.23 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCeEeecccccc
Q 006164 547 CVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aetyKf 568 (658)
...++|+..+||++.+...+-+
T Consensus 131 ~~~~aA~~~giP~v~~~~~~~~ 152 (415)
T 3rsc_A 131 AGQLLAARWRRPAVRLSAAFAS 152 (415)
T ss_dssp HHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHHHhCCCEEEEEecccc
Confidence 3467789999999988755543
No 125
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=47.33 E-value=73 Score=27.07 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcch-HHHHH----hhhccEEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHIN-AISYI----IHEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~Ds-Av~~i----M~~Vd~Viv 528 (658)
+..|+.+|.+..=..+...+.+.| .+|++++..+. .+..|.+ .|+.+.. .|. ....+ +.++|.||+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~-----~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~~~~d~vi~ 75 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKD-----ICKKASAEIDALVIN-GDCTKIKTLEDAGIEDADMYIA 75 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH-----HHHHHHHHCSSEEEE-SCTTSHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH-----HHHHHHHhcCcEEEE-cCCCCHHHHHHcCcccCCEEEE
Confidence 356788898765444455555555 56777776542 2334443 3665432 222 11111 457888888
Q ss_pred cceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-...- -.| ..++.+|+.+++.-+|
T Consensus 76 ~~~~~-----~~~----~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 76 VTGKE-----EVN----LMSSLLAKSYGINKTI 99 (140)
T ss_dssp CCSCH-----HHH----HHHHHHHHHTTCCCEE
T ss_pred eeCCc-----hHH----HHHHHHHHHcCCCEEE
Confidence 75321 111 3456678888765333
No 126
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=47.09 E-value=16 Score=36.32 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|.+.+-..-++.+.+.|-.+. |++.+...+ +..|.+.| .++++...--...+..+|.||...+.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~Vt--Vvap~~~~~----l~~l~~~~-~i~~i~~~~~~~dL~~adLVIaAT~d- 101 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAIT--VVAPTVSAE----INEWEAKG-QLRVKRKKVGEEDLLNVFFIVVATND- 101 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEE--EECSSCCHH----HHHHHHTT-SCEEECSCCCGGGSSSCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEE--EECCCCCHH----HHHHHHcC-CcEEEECCCCHhHhCCCCEEEECCCC-
Confidence 47889999999876666777777776544 444333222 34455544 34555332222234567777654322
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.-+ ...++..|+ .+|||-|+
T Consensus 102 ----~~~----N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 102 ----QAV----NKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ----THH----HHHHHHHSC-TTCEEEC-
T ss_pred ----HHH----HHHHHHHHh-CCCEEEEe
Confidence 122 245777788 99998876
No 127
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=47.08 E-value=79 Score=32.54 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcchHHHHHhhhccEEEEcce-
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~DsAv~~iM~~Vd~VivGAd- 531 (658)
+..+|+.+|.+..-...++...+.....+|+|.+-. .-.+|+.+|.+ .|++++.. .+...+.++|.|+.-.-
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g~~~~~~---~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCGVPARMA---APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHTSCEEEC---CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcCCeEEEe---CHHHHHhhCCEEEEccCC
Confidence 567899999986654445544443333467766655 45577777764 48887665 34556788999986432
Q ss_pred -------eEecCCCeecccchH
Q 006164 532 -------SVLSNGTVCSRVGTA 546 (658)
Q Consensus 532 -------aVlaNG~VvNKiGT~ 546 (658)
..+..|..++-+|++
T Consensus 194 ~~pvl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 194 TTPLFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp SSCSSCGGGCCTTCEEEECCCS
T ss_pred CCcccCHHHcCCCcEEEECCCC
Confidence 124567777777775
No 128
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=46.82 E-value=17 Score=37.28 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=69.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEe
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVl 534 (658)
-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.+.+.+.|+ .++-.|+++.+-+...+...-...+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 149 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA--TIIGPNCPGAITPGQAKVGIMPGHIF 149 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSSCEEEETTTEEEESCCGGGC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCCeeEcccccceeecccCCC
Confidence 4777777777777788999999887766666776665555677777777777 46656665555444333222222233
Q ss_pred cCC--CeecccchHHHHHH--HHhCCCCeEee
Q 006164 535 SNG--TVCSRVGTACVAMV--AYGFHIPVLVC 562 (658)
Q Consensus 535 aNG--~VvNKiGT~~lAl~--Ak~~~VPVyV~ 562 (658)
.-| +++++.|++..+++ +...++.|--+
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~ 181 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQSTV 181 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeEE
Confidence 334 57899999987775 55678887543
No 129
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=46.61 E-value=1e+02 Score=30.74 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=55.5
Q ss_pred CCEEEeeCChHHHHHHHHHHH---HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh-
Q 006164 455 GDVLLTYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~---e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~- 521 (658)
..+++|.|.+.++..+++.+. +.| -+|++.++. .+.+ .+...+...|+.+..+.. ..+-..+.
T Consensus 60 ~~v~~~~g~t~al~~~~~~~~~~~~~g--d~vlv~~~~-~~~~-~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 60 QPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVSTG-TFSD-RFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCTTCSC--CEEEEECSS-HHHH-HHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred ceEEEcCchHHHHHHHHHHHhccCCCC--CeEEEEcCC-cchH-HHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 357788888888866665553 333 367666542 2222 223445667988877743 12333343
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhC--CCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
++..|++ .+--...|.+.. -..++-+|+.| ++.+++
T Consensus 136 ~~~~~v~~-~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 136 NSYGAVTV-THVDTSTAVLSD---LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp SCCSEEEE-ESEETTTTEECC---HHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEE-EccCCCcCeEcC---HHHHHHHHHhhCCCCEEEE
Confidence 3555554 222223355543 34677788998 887765
No 130
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=46.57 E-value=49 Score=29.24 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred HHHHhCCCCEEEEc--chHHHHH---hh--hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeec
Q 006164 499 RRLVRKGLSCTYTH--INAISYI---IH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 499 ~eL~~~GI~vTlI~--DsAv~~i---M~--~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..|...|++++... ......+ .. ++|.||+|++.- |.+-. -.|+..-.+ .++..+||+|+=
T Consensus 90 ~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~ 158 (162)
T 1mjh_A 90 KELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEEC
T ss_pred HHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEe
Confidence 34556788876442 2222223 33 799999999853 22222 256654444 455689999984
No 131
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=46.43 E-value=23 Score=38.42 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHhccCCCEEEeeCChHHHHHHHHHHHHc---CCeeEEEEeCC-C----------------CCchHHHHHHHHHhCC
Q 006164 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS-R----------------PKHEGKLLLRRLVRKG 505 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~---gk~f~ViV~ES-R----------------P~~EG~~La~eL~~~G 505 (658)
+.|+++|++|++|...|+...-+.++....++ -+.++++..-+ . +++-|..+.+...+-+
T Consensus 10 eeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~~G~ 89 (436)
T 2oas_A 10 LEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSGD 89 (436)
T ss_dssp HHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTTS
T ss_pred HHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHHcCC
Confidence 45667899999999988753222334333333 26788876321 1 1122223333333344
Q ss_pred CCEEEEcchHHHHHhh----hccEEEEcceeEecCCCeecc
Q 006164 506 LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (658)
Q Consensus 506 I~vTlI~DsAv~~iM~----~Vd~VivGAdaVlaNG~VvNK 542 (658)
+..+-+..+.+..++. .+|..|+.|...-.+|.+.-.
T Consensus 90 ~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~ 130 (436)
T 2oas_A 90 ADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLG 130 (436)
T ss_dssp SEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECT
T ss_pred CeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEe
Confidence 5444444555554443 589999999999999987643
No 132
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=46.31 E-value=76 Score=32.69 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEcchHHHHH---hh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vTlI~DsAv~~i---M~-~Vd~VivG 529 (658)
+.|++-+-+.++..+++.+.+.| -+|++.+ |.+.|. ..... +...|+.+.++...-...+ +. +...|++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~g--d~vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 150 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKG--DHLIAGD--TLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYL- 150 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTT--CEEEEES--SCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEE-
T ss_pred eEEEeCCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 45555544445544444443333 3566654 556553 33333 5678999999864323322 32 3344444
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..---..|.+.. --.++-+|+.|++.++|
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~liv 179 (389)
T 3acz_A 151 ESPANPTCKVSD---IKGIAVVCHERGARLVV 179 (389)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222222344443 35677889999988776
No 133
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=46.10 E-value=57 Score=33.25 Aligned_cols=111 Identities=9% Similarity=0.100 Sum_probs=63.2
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----hHHHHHhhhccEEE
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd~Vi 527 (658)
.|.+||..|-+.-+..- .+.+.+. |. .+|+++...+. ....+..+|...++.+. +.| ..+..++..+|.||
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~-~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~D~Vi 96 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDEL-KQSEMAMEFNDPRMRFF-IGDVRDLERLNYALEGVDICI 96 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHH-HHHHHHHHHCCTTEEEE-ECCTTCHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChh-hHHHHHHHhcCCCEEEE-ECCCCCHHHHHHHHhcCCEEE
Confidence 46788888876555333 3344444 43 26666654322 22334444543344332 233 35667777888887
Q ss_pred EcceeEec--------CCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 528 LGASSVLS--------NGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 528 vGAdaVla--------NG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
--|-.... .---.|-.||..++-+|+.+++.-+|...+.+
T Consensus 97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 66532110 00113668999999999999998777766543
No 134
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=46.06 E-value=17 Score=37.01 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEe
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVl 534 (658)
-|.++.+-....+..++.+|.+.|.+.-|++.+.-+..+-.+|.+...+.|+. ++-.|.++.+-+..-+...-...+.
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~--liGPNc~Gi~~p~~~~~~~~~~~~~ 142 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR--MIGPNTPGVITPGECKIGIQPGHIH 142 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE--EECSSCCEEEETTTEEEESSCTTSC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EEecCCcceecCCcceeEecccCCC
Confidence 47777777777777889999998887667777777776667777777788873 5655555544443222211111223
Q ss_pred cCC--CeecccchHHHHHH--HHhCCCCeEe
Q 006164 535 SNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (658)
Q Consensus 535 aNG--~VvNKiGT~~lAl~--Ak~~~VPVyV 561 (658)
.-| ++++..||+..+++ +...++.|--
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQST 173 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCCCEEE
Confidence 334 46888999776665 5667777753
No 135
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=45.70 E-value=64 Score=34.05 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=53.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|+|-+-+.++..+|..+.+.| -+|++. .|.+.|.. +. ..+...|+.++++... ++-..+. ++.+|++
T Consensus 98 ~~~~~~sG~~Ai~~al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~l- 172 (414)
T 3ndn_A 98 AAFATASGMAAVFTSLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF- 172 (414)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 34555444556655555443333 355554 34555543 33 3356689999998643 3333333 4555655
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+. ..|.+.. --.|+-+|+.|+++++|
T Consensus 173 -e~p~NptG~~~~---l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 173 -ETPSNPMQSLVD---IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -ECCCCCCCcccc---HHHHHHHHHHcCCEEEE
Confidence 2222 2343322 34677889999998876
No 136
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.68 E-value=88 Score=27.47 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH-----hhhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 529 (658)
.+.|+..|++..=..+.+.+.+.| +.|+++|..|. .+.+|.+.|+++.+ -|..-..+ +.++|.||+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~-----~~~~~~~~g~~~i~-gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRT-----RVDELRERGVRAVL-GNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEE-SCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHHcCCCEEE-CCCCCHHHHHhcCcccCCEEEEE
Confidence 357888899876555566666555 47777787653 34567778987643 34322222 3467777655
Q ss_pred ceeEecCCCeecccchHHHHHHHHhC--CCCeEeecc
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLVCCE 564 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV~ae 564 (658)
... ..-+..+++.|+.. ++.+++-+.
T Consensus 79 ~~~---------~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 79 IPN---------GYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp CSC---------HHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred CCC---------hHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 322 12234466667765 455555443
No 137
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=45.65 E-value=70 Score=33.20 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCCEEEEcch--HHHHHhh-hccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGA 530 (658)
++++|-|-+.++..+|..+.+.| -+|++.+ |.+.+. ..... +...|+.+.++... .+-..+. ++..|++ .
T Consensus 73 ~~~~~~~gt~a~~~al~~l~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~-~ 147 (412)
T 2cb1_A 73 EAVVLASGQAATFAALLALLRPG--DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFV-E 147 (412)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEE-E
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEE-e
Confidence 56777666667766665543333 3566654 455443 22232 55679999888643 2222232 3444444 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..--..|.+.. --.++-+|++|++.+++=
T Consensus 148 ~~~n~~G~~~~---l~~i~~l~~~~~~~li~D 176 (412)
T 2cb1_A 148 TVANPALLVPD---LEALATLAEEAGVALVVD 176 (412)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEEEEE
Confidence 22222455443 456778899999988763
No 138
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=45.55 E-value=72 Score=33.39 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=53.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH--HHHhCCCCEEEE-cch---HHHHHhh-hccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR--RLVRKGLSCTYT-HIN---AISYIIH-EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~--eL~~~GI~vTlI-~Ds---Av~~iM~-~Vd~Viv 528 (658)
+.|++-+.+.++..+|..+...| -+|++. .|.+.|..... .+...|+.+.++ ... .+-..+. ++..|++
T Consensus 75 ~~v~~~sGt~A~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~ 150 (421)
T 2ctz_A 75 AALATASGHAAQFLALTTLAQAG--DNIVST--PNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWV 150 (421)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEE
T ss_pred ceEEecCHHHHHHHHHHHHhCCC--CEEEEe--CCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEE
Confidence 34444443556665555543333 356553 45665654432 256789999988 432 3333343 3444443
Q ss_pred cceeEec-CCCeecccchHHHHHHHHhCCCCeEe
Q 006164 529 GASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+.. .|.+.. --.++-+|+.|+++++|
T Consensus 151 --~~~~n~~G~~~~---l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 151 --ESIGNPALNIPD---LEALAQAAREKGVALIV 179 (421)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred --ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 33332 344443 45678899999998876
No 139
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=45.48 E-value=1.9e+02 Score=26.76 Aligned_cols=38 Identities=0% Similarity=-0.279 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhh---ccEEEEcc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLGA 530 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~---Vd~VivGA 530 (658)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-.
T Consensus 128 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~ 168 (199)
T 1x92_A 128 NVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeC
Confidence 345667888999999999999877777777 89887543
No 140
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=45.44 E-value=1.1e+02 Score=27.39 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHHhCCCC-EEEE--cchHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeec
Q 006164 499 RRLVRKGLS-CTYT--HINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 499 ~eL~~~GI~-vTlI--~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..|...|++ ++.. .....-.++. ++|.||+|++.- |.+-. -.|+..--+ .++..+||+|+-
T Consensus 88 ~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV~ 157 (163)
T 1tq8_A 88 ERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIVH 157 (163)
T ss_dssp HHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEEC
T ss_pred HHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEEe
Confidence 445567998 6543 2333333333 689999999743 22211 246554444 455679999984
No 141
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=45.32 E-value=45 Score=38.87 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhccC---CCEEEeeCChH--HHHHHHHHHHHcC---------CeeEEEEeCCCCCchHHHHHHHHHhCC
Q 006164 440 ADRVIVKHAVTKIRD---GDVLLTYGSSS--AVEMILQHAHELG---------KQFRVVIVDSRPKHEGKLLLRRLVRKG 505 (658)
Q Consensus 440 a~~~Ia~~a~~~I~d---gdvILT~g~Ss--aV~~vL~~A~e~g---------k~f~ViV~ESRP~~EG~~La~eL~~~G 505 (658)
-.++|.++..+++.+ +.+||..|.++ .+..+|+.+...| ...+||.+|-.|.-. ..++.....|
T Consensus 392 Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~--~~l~~~~~Ng 469 (745)
T 3ua3_A 392 YGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI--VTLKYMNVRT 469 (745)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH--HHHHHHHhcC
Confidence 344555555555543 35899999876 3434566665455 678999999988543 2223333344
Q ss_pred C--CEEEEcchHHHHHh-------hhccEEE
Q 006164 506 L--SCTYTHINAISYII-------HEVTRVF 527 (658)
Q Consensus 506 I--~vTlI~DsAv~~iM-------~~Vd~Vi 527 (658)
. .+|+|.-.+=-+-+ .+||.+|
T Consensus 470 ~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 470 WKRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp TTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred CCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 3 47888755444444 4788876
No 142
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=45.11 E-value=74 Score=31.42 Aligned_cols=98 Identities=8% Similarity=0.090 Sum_probs=55.5
Q ss_pred CEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCC-C---chHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEE
Q 006164 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K---HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVF 527 (658)
Q Consensus 456 dvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP-~---~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~Vi 527 (658)
.+||..|-+.-+. .+++.+.+.| ++|+++.-++ . .+.......|...|+.+.... | ..+..++..+|.||
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4577777653332 2234444556 4566654443 1 122233445667787654432 2 34566676666665
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCC-CCeEee
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV~ 562 (658)
.-| +...-.++..+.-+|+..+ ++-+|.
T Consensus 83 ~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 83 SAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp ECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred ECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 433 3333567888888888888 887774
No 143
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=44.97 E-value=1.8e+02 Score=29.47 Aligned_cols=16 Identities=0% Similarity=0.000 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCeEe
Q 006164 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
..++-+|++|++++++
T Consensus 207 ~~l~~l~~~~~~~li~ 222 (397)
T 2ord_A 207 EEARKLCDEYDALLVF 222 (397)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4567788999998776
No 144
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=44.79 E-value=96 Score=34.08 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=67.9
Q ss_pred ccCCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCC-Cch-HHHHHHHHHhCCCCEEEE-cc----hHHHHHhhh-
Q 006164 452 IRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRP-KHE-GKLLLRRLVRKGLSCTYT-HI----NAISYIIHE- 522 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP-~~E-G~~La~eL~~~GI~vTlI-~D----sAv~~iM~~- 522 (658)
+..+.+||..|-+.-+...| +.+.+.|.. +|+++.-++ ..+ -.++..+|...|..++++ +| .++..++.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 34567888888776664433 344444542 455443332 222 346678898899888876 33 356666765
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHHhC-CCCeEeeccc
Q 006164 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF-HIPVLVCCEA 565 (658)
Q Consensus 523 -Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~-~VPVyV~aet 565 (658)
+|.||--|- +..+|.+ .|-.|+..+.-+++.. +..++|++-+
T Consensus 335 ~ld~VVh~AG-v~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 335 PPNAVFHTAG-ILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp CCSEEEECCC-CCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred CCcEEEECCc-ccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 888887663 3334422 2556777777777666 6777776544
No 145
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=44.55 E-value=43 Score=33.74 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=63.4
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda 532 (658)
..+..|..+||-..+...|+ .+ ++|+|+|-.|.+-|.. ...|....++++++|.||+=..+
T Consensus 114 ~~~~kV~vIG~~p~l~~~l~-----~~-~~v~V~d~~p~~~~~~-------------~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 114 DEIKRIAIIGNMPPVVRTLK-----EK-YEVYVFERNMKLWDRD-------------TYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp SCCSEEEEESCCHHHHHHHT-----TT-SEEEEECCSGGGCCSS-------------EECGGGHHHHGGGCSEEEEETTH
T ss_pred cCCCEEEEECCCHHHHHHHh-----cc-CCEEEEECCCcccCCC-------------CCChhHHHhhhccCCEEEEEeee
Confidence 35689999999886533332 23 8999999999864321 13565555799999999988777
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEeeccccccccccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~ 573 (658)
+. ||++- ..+.+ |+ ....++++.||.-+++.+-
T Consensus 175 lv-N~Ti~-----~lL~~-~~-~~~~vvl~GPS~~~~P~~~ 207 (249)
T 3npg_A 175 IV-NGTLD-----MILDR-AK-KAKLIVITGPTGQLLPEFL 207 (249)
T ss_dssp HH-HTCHH-----HHHHH-CS-SCSEEEEESGGGCSCGGGG
T ss_pred ec-cCCHH-----HHHHh-Cc-ccCeEEEEecCchhhHHHH
Confidence 65 54321 12222 22 3457899999988887653
No 146
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=44.54 E-value=2.2e+02 Score=31.65 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=33.9
Q ss_pred hccEEEEcceeEecCCCeeccc--ch---HHHHHHHHhCCCCeEeecc
Q 006164 522 EVTRVFLGASSVLSNGTVCSRV--GT---ACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKi--GT---~~lAl~Ak~~~VPVyV~ae 564 (658)
.+|..|+-|...-.+|.+.-.. +. ..+|++||..+--|+|-++
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveVn 227 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQ 227 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEES
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEEc
Confidence 5899999999999999977653 22 3678999988777777655
No 147
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=44.11 E-value=65 Score=34.52 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=56.0
Q ss_pred EEeeCChHHHHHHHHHHHHcCC------eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhhc
Q 006164 458 LLTYGSSSAVEMILQHAHELGK------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk------~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~V 523 (658)
++|.|-+.++..+|+.+.+.|. +-+|++. .|.+-+.. +.+...|+.+..+.. .++-..+.+=
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~--~~~~~~~~--~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVP--VSAHAAFD--KAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEE--TTSCTHHH--HHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEe--CccchHHH--HHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 8888877777777766654431 1356663 44454432 334445888888852 2333333322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++|+...--...|.+.. --.|+-+|+.|+++|+|=+
T Consensus 240 ~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 240 TVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp EEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred CEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 344433332223455443 3567788999999988743
No 148
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=44.10 E-value=78 Score=28.24 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=51.2
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEcch---H-HHHH-hhhccEE
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN---A-ISYI-IHEVTRV 526 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vTlI~Ds---A-v~~i-M~~Vd~V 526 (658)
..++.|+.+|.+..=..+.+.+.+.| ++|++++..+.. +..|. ..|+.+.. .|. . +... +..+|.|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~-----~~~~~~~~g~~~~~-~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYA-----FHRLNSEFSGFTVV-GDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGG-----GGGSCTTCCSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHH-----HHHHHhcCCCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence 45789999999876545555666556 478888776543 22333 45665432 221 1 1111 4467777
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHh-CCCCeEee
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLVC 562 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~~VPVyV~ 562 (658)
|+.... ..-...++.+++. ++...+|+
T Consensus 89 i~~~~~---------~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 89 FAFTND---------DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp EECSSC---------HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEeCC---------cHHHHHHHHHHHHHCCCCeEEE
Confidence 765432 1122445566776 66555544
No 149
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=43.99 E-value=61 Score=31.78 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEcc
Q 006164 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGA 530 (658)
+.+||..|-+..+.. +++.+.++|. ++|+++.-.|... -+..|...|+.+.... | ..+..++..+|.||.-|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~~~~---~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNPRKK---AAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCTTSH---HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCCCCH---HHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 457888887655533 3344444452 5677665444332 1245556677554321 2 35566677788877654
Q ss_pred eeEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
...-....-.|-.|+..+.-+|+..++.-+|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 81 NYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 31110011123346777777777788887776544
No 150
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=43.95 E-value=95 Score=28.30 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-.
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 345666788999999999999988788888899887654
No 151
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=43.89 E-value=60 Score=36.21 Aligned_cols=115 Identities=15% Similarity=0.274 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006164 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|...-+...+-+|+|+.+ ||+.+-+-+.+++. +.+++.+|+.+...++-+.
T Consensus 215 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 294 (557)
T 1uwk_A 215 QATDLDDALVRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTEPAA 294 (557)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 34567777777778888899999975 99988666655541 1134688998888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006164 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
|.+. +.+.|..|.. ++-..|..+.-|||+ +-|..+|+-.+..|+ .||=+++-..|
T Consensus 295 ~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 370 (557)
T 1uwk_A 295 VVKA----AKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCRGVGPFRWAALSGEA 370 (557)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTTCCBCBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCBCEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 8654 5566666643 344568888888886 234455555555565 46766666555
Q ss_pred C
Q 006164 491 K 491 (658)
Q Consensus 491 ~ 491 (658)
.
T Consensus 371 e 371 (557)
T 1uwk_A 371 E 371 (557)
T ss_dssp H
T ss_pred H
Confidence 3
No 152
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=43.85 E-value=1.2e+02 Score=30.42 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=54.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHh-hhccEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII-HEVTRV 526 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM-~~Vd~V 526 (658)
.+++|.|.+.++..+++.+.+.| -+|++. .|.+.|.... +...|+.+..+.. ..+-..+ +++..|
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 162 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPE--DLLLLP--EVAYPSYFGA--ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVL 162 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHHH--HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCC--CEEEEC--CCCcHhHHHH--HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEE
Confidence 68888887888866666553333 355554 4666665433 4457888877752 1221222 345556
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 163 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 196 (376)
T 2dou_A 163 LLN-YPNNPTGAVADWGYFEEALGLARKHGLWLIH 196 (376)
T ss_dssp EEC-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEC-CCCCCcCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2112234443322123566788999998776
No 153
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=43.61 E-value=3.2e+02 Score=29.05 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=54.2
Q ss_pred EEEE-eCCCCCchH---HHHHHHHHhCCCCEEEE--cc---hHHHHHhh---hccEEEEcceeEecCCCeecccchHHHH
Q 006164 482 RVVI-VDSRPKHEG---KLLLRRLVRKGLSCTYT--HI---NAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVA 549 (658)
Q Consensus 482 ~ViV-~ESRP~~EG---~~La~eL~~~GI~vTlI--~D---sAv~~iM~---~Vd~VivGAdaVlaNG~VvNKiGT~~lA 549 (658)
+|.| -.|.=.+-- ..+++.|.+.|+++.++ .| ..++.++. +++.+++|+-++ ||++.-.+-....-
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~--~~~~~p~~~~~l~~ 344 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY--EAEIHPLMRFTLLE 344 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT--TSSSCHHHHHHHHH
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc--CCcCCHHHHHHHHH
Confidence 4444 445544421 24457788899998754 33 23566666 789999999987 67888877766666
Q ss_pred HHHHhC-CCCeEeecccccc
Q 006164 550 MVAYGF-HIPVLVCCEAYKF 568 (658)
Q Consensus 550 l~Ak~~-~VPVyV~aetyKf 568 (658)
+.+..+ |+++.+ ..+|-.
T Consensus 345 l~~~~~~~K~~~~-FGSyGW 363 (410)
T 4dik_A 345 IIDKANYEKPVLV-FGVHGW 363 (410)
T ss_dssp HHHHCCCCCEEEE-EEECCC
T ss_pred HHhcccCCCEEEE-EECCCC
Confidence 666654 566554 456643
No 154
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=43.51 E-value=2e+02 Score=26.46 Aligned_cols=36 Identities=3% Similarity=-0.274 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCEEEEcchHHHHHhhh---ccEEEEc
Q 006164 494 GKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLG 529 (658)
Q Consensus 494 G~~La~eL~~~GI~vTlI~DsAv~~iM~~---Vd~VivG 529 (658)
=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-
T Consensus 125 ~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 125 IVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEe
Confidence 34566888899999999999877777666 8887753
No 155
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=43.46 E-value=1.8e+02 Score=30.97 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH--------cC----CeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEcch------
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN------ 514 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e--------~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI-~vTlI~Ds------ 514 (658)
.+..++|-|-|.++...|..+.+ .| .+..|++.+ +.+-...-+..+...|. .+..|...
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~--~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE--QSHYSIKKAGAALGFGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--cchHHHHHHHHHcCCCcccEEEEecCCCCCCC
Confidence 34678888877777666666642 35 245677754 33322222223323344 77777532
Q ss_pred --HHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 515 --AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 515 --Av~~iM~~------Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++-..+.+ ..++|+....-...|.+ .. --.|+-+|+.|++.|+|
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i-~~--l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-DP--IQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCB-CC--HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCc-CC--HHHHHHHHHHcCCEEEE
Confidence 33333433 23444433222222433 22 24677889999999877
No 156
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=43.45 E-value=74 Score=31.17 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd~ 525 (658)
.+++|.|-+.++..+++.+.+ -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~----d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 127 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDR----GPVLVLV--NGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRM 127 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSC----CCEEEEE--CSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSE
T ss_pred eEEEcCCcHHHHHHHHHHhcC----CcEEEEc--CCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCE
Confidence 466666666677555544322 2466553 333343333445667988887752 22333333 3455
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++ ..--...|.+.. --.++-+|+.|++.+++
T Consensus 128 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 128 VAL-VHGETSTGVLNP---AEAIGALAKEAGALFFL 159 (353)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEE-EccCCCcceecC---HHHHHHHHHHcCCeEEE
Confidence 544 333334466654 34677788999987765
No 157
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=43.45 E-value=75 Score=27.05 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=49.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH----HHHH-hhhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----ISYI-IHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA----v~~i-M~~Vd~VivG 529 (658)
+..|+.+|.+..=..+.+.+.+.|. +|++++..+. -+..+.+.|+.+ +..|.. +..+ +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~~-----~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEE-----KVNAYASYATHA-VIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHH-----HHHTTTTTCSEE-EECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHH-----HHHHHHHhCCEE-EEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 4568888986654455555666664 5666665431 233445556643 222321 1111 4567877765
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+..- .--...++..|+.++++.+|+
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~ii~ 102 (144)
T 2hmt_A 78 IGAN--------IQASTLTTLLLKELDIPNIWV 102 (144)
T ss_dssp CCSC--------HHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCc--------hHHHHHHHHHHHHcCCCeEEE
Confidence 5321 011235677888888874443
No 158
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=43.45 E-value=55 Score=32.01 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEEc----------chHHHHHhh--h
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV~-ESRP~~EG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~ 522 (658)
.||..|+++.++.+|.. .+++. .++|..+ -.+|...|.+.| .+.||++.++. |..+...++ +
T Consensus 4 ~vl~Sg~gsnl~ali~~-~~~~~~~~~i~~Vis~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (212)
T 1jkx_A 4 VVLISGNGSNLQAIIDA-CKTNKIKGTVRAVFSNKADAFGLERA---RQAGIATHTLIASAFDSREAYDRELIHEIDMYA 79 (212)
T ss_dssp EEEESSCCHHHHHHHHH-HHTTSSSSEEEEEEESCTTCHHHHHH---HHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC
T ss_pred EEEEECCcHHHHHHHHH-HHcCCCCceEEEEEeCCCchHHHHHH---HHcCCcEEEeCcccccchhhccHHHHHHHHhcC
Confidence 57777888988666554 44443 3444333 234555565444 57899998864 233444444 5
Q ss_pred ccEEEEcc
Q 006164 523 VTRVFLGA 530 (658)
Q Consensus 523 Vd~VivGA 530 (658)
+|.+|+-+
T Consensus 80 ~Dliv~ag 87 (212)
T 1jkx_A 80 PDVVVLAG 87 (212)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 78777644
No 159
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=43.39 E-value=1.1e+02 Score=27.90 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=60.5
Q ss_pred cCCCEEEeeCCh--HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHh
Q 006164 453 RDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (658)
Q Consensus 453 ~dgdvILT~g~S--saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM 520 (658)
..| ++++.+.. .-+..+.+..++ ..|++|.++ | .++.|.+.||+|+.+.. ..+..+|
T Consensus 24 ~~g-vliSv~d~dK~~l~~~a~~l~~--lGf~i~AT~------G--Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRPRFLGVAEQLHN--EGFKLFATE------A--TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp CSE-EEEECCGGGHHHHHHHHHHHHT--TTCEEEEEH------H--HHHHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred CCC-EEEEecccchHHHHHHHHHHHH--CCCEEEECc------h--HHHHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 356 77776653 223345555543 578888764 2 35678889999999953 3355555
Q ss_pred h--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 521 H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 521 ~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+ ++|.||-=.+ |.--...-.|.+=-+|-.|+||++--
T Consensus 93 ~~g~i~lVInt~~-----~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 93 RDGSIDLVINLPN-----NNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HTTSCCEEEECCC-----CCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred HCCCceEEEECCC-----CCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 5 7999986543 21111345677778899999999853
No 160
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=43.26 E-value=58 Score=31.40 Aligned_cols=37 Identities=19% Similarity=-0.029 Sum_probs=30.3
Q ss_pred hHHHHHHHHHh--CCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 493 EGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 493 EG~~La~eL~~--~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+=.++++.+.+ .|+++..|+++.-+.+-+.+|.+|.-
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 34566788889 99999999998878888889998864
No 161
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=43.26 E-value=35 Score=37.74 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCCh--HHHHHHHHHHHHcCCeeEEEEeCC-----CCCchHHHHHHHHHhCCCC-EE--
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDS-----RPKHEGKLLLRRLVRKGLS-CT-- 509 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~S--saV~~vL~~A~e~gk~f~ViV~ES-----RP~~EG~~La~eL~~~GI~-vT-- 509 (658)
.++.|+.+++..|+||++|- .|-+ ++|..++ ..++.+ .+.+|+ .|+...-..-..|.+.|-. ++
T Consensus 262 ~~~~Ia~raA~el~dG~~vn-lGIGiP~~v~~~~----~~~~~l-~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~t~~ 335 (481)
T 3k6m_A 262 VRERIIKRAALEFEDGMYAN-LGIGIPLLASNFI----SPNMTV-HLQSENGILGLGPYPLQNEVDADLINAGKETVTVL 335 (481)
T ss_dssp CHHHHHHHHGGGCCTTEEEE-ECTTHHHHHGGGC----CTTSCE-EEEETTTEEEECCCCCGGGCCTTCBCTTSBBCCEE
T ss_pred HHHHHHHHHHHhcCCCCEEE-EccCHHHHHHhhh----ccCCcE-EEEECCcEeCCccCCCCCccCcccccCCCceEecc
Confidence 45679999999999997543 3544 4443333 234433 333443 4442111111234445522 22
Q ss_pred ---EEcchHHHH-Hhh--hccEEEEcceeEecCCCeec
Q 006164 510 ---YTHINAISY-IIH--EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 510 ---lI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvN 541 (658)
-+.|+.-.+ ++. .+|..|+||=-|-.+|.+.|
T Consensus 336 ~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~ 373 (481)
T 3k6m_A 336 PGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLAN 373 (481)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEEC
T ss_pred ccceecCCHHHeeeecCCCeEEEEechHhccCCCCccc
Confidence 234454444 444 69999999999999999854
No 162
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=43.11 E-value=82 Score=26.49 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=38.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC-CCCchHHHHHHHHHh------CCCCEEEEcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVR------KGLSCTYTHI 513 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES-RP~~EG~~La~eL~~------~GI~vTlI~D 513 (658)
.|.+..........|....+.+..+.++++|- -|...|..+++.|.+ ..+++.+++.
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 56666555544455555544557788888874 488899999998887 3466666654
No 163
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=43.10 E-value=1.2e+02 Score=31.02 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEcchHHHHH---hh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vTlI~DsAv~~i---M~-~Vd~VivG 529 (658)
+.|++-+-+.++..+|+.+.+.| -+|++. .|.+.+.... .. +...|+.+.++....+..+ +. ++..|++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 155 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQG--DHIVSA--SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYI- 155 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 55665555556655555554333 356654 4566554332 22 3678999988864333333 32 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..---..|.+.. -..++-+|++|++.+++
T Consensus 156 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 184 (398)
T 2rfv_A 156 ETPANPTLSLVD---IETVAGIAHQQGALLVV 184 (398)
T ss_dssp ESSBTTTTBCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222122354443 45677789999998775
No 164
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=42.97 E-value=98 Score=30.77 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=54.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhh--ccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE--VTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~--Vd~ 525 (658)
.+++|.|.+.++. +|..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+.+ +..
T Consensus 56 ~v~~~~g~t~al~-~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 130 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSLLKPN--DKILVVS--NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL 130 (384)
T ss_dssp EEEEESCHHHHHH-HGGGGCCTT--CEEEEEC--SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEE
T ss_pred EEEEcCCcHHHHH-HHHhhcCCC--CEEEEec--CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcE
Confidence 4677777777887 666554333 3566653 334343344444567988888752 233333433 333
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++ ..-=-..|.+.. --.|+-+|+.|++.+++
T Consensus 131 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 131 VAL-THVETSTGVREP---VKDVINKIRKYVELIVV 162 (384)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEE
T ss_pred EEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEE
Confidence 433 332233454443 34577789999987776
No 165
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=42.94 E-value=71 Score=31.75 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhhccE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEVTR 525 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~Vd~ 525 (658)
...+++|-|.+.++..+++.+ -+|++.+ |.+.+.. ..+...|+.+..+.. ..+-..+.+...
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------d~vi~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 147 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------EKILIIV--PSYAEYE--INAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDS 147 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------SEEEEEE--SCCTHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSE
T ss_pred cceEEEcCCHHHHHHHHHHHc------CcEEEec--CChHHHH--HHHHHcCCeEEEeecCcccCCCHHHHHHhccCCCE
Confidence 345667767666775555433 3555543 5555543 334456888887752 234444444233
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|++ .+---..|.++..---..++-+|+.|++.+++=
T Consensus 148 v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 183 (361)
T 3ftb_A 148 VII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIIID 183 (361)
T ss_dssp EEE-ETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEE
Confidence 322 111112333333333345667788999988763
No 166
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=42.81 E-value=1.2e+02 Score=29.86 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=53.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhhh---cc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE---VT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~---Vd 524 (658)
.+++|.|-+.++..+++.+.+.|. +|++.+ .+++.. .+...+...|+++..+.. ..+-..+.+ +.
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd--~vi~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQD--KVLIVS-NGAYGA-RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTC--CEEEEE-SSHHHH-HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEecChHHHHHHHHHHhcCCCC--eEEEEe-CCCccH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 477777777777666655543333 455443 344322 233344556888877642 223333432 33
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.|++ ...-...|.++. --.++-+|++|++.+++
T Consensus 134 ~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 166 (366)
T 1m32_A 134 HIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIV 166 (366)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 3332 222122376665 34677789999987765
No 167
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=42.76 E-value=89 Score=31.59 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------------hHHHHHh
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 520 (658)
..+++|.|.+.++..++..+...| -+|++. .|.+.+.. .-+...|..+..+.. ..+-..+
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 176 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF 176 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCC--CEEEEc--CCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHH
Confidence 467777777777766555443333 355553 35555433 334456777766642 2233333
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. +...|++ .+---..|.++..----.++-+|+.|++.+++
T Consensus 177 ~~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 177 KAGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HTTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hhCCcEEEE-cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 4555554 22222235555433345677788999988776
No 168
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=42.38 E-value=38 Score=32.47 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=52.6
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH-----hhhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 529 (658)
...|+..|++..-..+.+.+.+. .+ |+++|..|.. +.++. .|+.+.+ -|..=... +.++|.||+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~-----~~~~~-~~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDENVR-----KKVLR-SGANFVH-GDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGH-----HHHHH-TTCEEEE-SCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHH-----HHHHh-cCCeEEE-cCCCCHHHHHhcCcchhcEEEEc
Confidence 45788889987665555555443 45 8888876642 33444 6766543 33221112 4567777765
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+ +..-...+++.|+.++....+++
T Consensus 79 ~~---------~d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 79 LE---------SDSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp CS---------CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CC---------CcHHHHHHHHHHHHHCCCCeEEE
Confidence 32 22345678888999887544333
No 169
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=42.26 E-value=57 Score=36.15 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHhccCCCEEEeeCCh------HHHHHHHHHHHH---cCC--eeEEEEe-CCCC-----------------CchHHH
Q 006164 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHE---LGK--QFRVVIV-DSRP-----------------KHEGKL 496 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S------saV~~vL~~A~e---~gk--~f~ViV~-ESRP-----------------~~EG~~ 496 (658)
+.|+.+|+||++|...|+. .++..+.+++.+ .|. +++++.. -..| ++.|..
T Consensus 9 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~~ 88 (506)
T 2nvv_A 9 EEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKD 88 (506)
T ss_dssp HHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCHH
Confidence 3566789999999999864 345555555443 332 4555542 1222 222233
Q ss_pred HHHHHHhCC-CCEEEEcchHHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006164 497 LLRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (658)
Q Consensus 497 La~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNK 542 (658)
.+++.+.| ++++-+..+.+..++. .+|..|+-|...-.+|.+.-.
T Consensus 89 -~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 139 (506)
T 2nvv_A 89 -LRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT 139 (506)
T ss_dssp -HHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC
T ss_pred -HHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 33444455 4433334455554443 489999999999999987653
No 170
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=42.23 E-value=28 Score=37.13 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=51.0
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.|..|.+||..|.+..-.++++.|.+.| ++|++++..|..-+..++ +.-+...|....++..+..++|.|+.|-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG--~~v~v~d~~~~~p~~~~a----d~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMG--YRVAVLDPDPASPAGAVA----DRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCTTCHHHHHS----SEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCcCchhhhC----CEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 5778999999999987777888888765 568888877776555543 2111111111235555557899999887
Q ss_pred eeE
Q 006164 531 SSV 533 (658)
Q Consensus 531 daV 533 (658)
+.+
T Consensus 105 e~~ 107 (419)
T 4e4t_A 105 ENV 107 (419)
T ss_dssp TTC
T ss_pred CcC
Confidence 655
No 171
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=42.17 E-value=1.4e+02 Score=30.16 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=52.3
Q ss_pred CCEEE--eeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHh
Q 006164 455 GDVLL--TYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (658)
Q Consensus 455 gdvIL--T~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM 520 (658)
..+++ |.|-+.+++.+++.+.. .|. +|++. .|.+.|.... +...|..+..+.. ..+-..+
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 163 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDL--RVFVS--DPTWPNHVSI--MNFMGLPVQTYRYFDAETRGVDFEGMKADL 163 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHHHH--HHHHTCCEEEEECEETTTTEECHHHHHHHH
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHHH--HHHcCCceEEEecccccCCccCHHHHHHHH
Confidence 35666 77777777666654443 343 45554 3666665433 3345777766642 1333334
Q ss_pred hh---ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 521 HE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~~---Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+ .+++++=..---..|.++..-=-..++-+|+.|++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 207 (394)
T 2ay1_A 164 AAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 32 244444222222334333322122466778889987765
No 172
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=42.15 E-value=60 Score=36.17 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCccccH-HHHHHHHHHHHHhc--------------------CCCccHHHHHHHHHHHHHH
Q 006164 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~rdL~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|...-+...+-+|+|+.+ ||+.+-+-+.+++. +.+++.+|+.+...++-+.
T Consensus 211 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 290 (552)
T 2fkn_A 211 KTASIEEALAWAEEAKLAGKPLSIALLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADRLRQDTPEL 290 (552)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 34567777777778888899999975 99998777666541 1134678998888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006164 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
|.+. +.+.+.+|.. ++-..|..+.=|||+ +-|..+|+-.+..|+ .||=+++-..|
T Consensus 291 ~~~~----~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 366 (552)
T 2fkn_A 291 YVRL----AKQSMKKHVEAMLAFQQKGSIVFDYGNNIRQVAKDEGLENAFDFPGFVPAYIRPLFCEGKGPFRWAALSGDP 366 (552)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCCCEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 8654 5566666643 344568888888886 234455555555555 46766666555
Q ss_pred C
Q 006164 491 K 491 (658)
Q Consensus 491 ~ 491 (658)
.
T Consensus 367 e 367 (552)
T 2fkn_A 367 A 367 (552)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=42.02 E-value=72 Score=35.27 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=54.8
Q ss_pred HHHHHhccCCCEEEeeCCh------HHHHHHHHHHHHcCCeeEEEEe-CCCCCch-----------------HHHHHHHH
Q 006164 446 KHAVTKIRDGDVLLTYGSS------SAVEMILQHAHELGKQFRVVIV-DSRPKHE-----------------GKLLLRRL 501 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S------saV~~vL~~A~e~gk~f~ViV~-ESRP~~E-----------------G~~La~eL 501 (658)
+.|+.+|+||++|...|+. .++..+.+++.+.+.+++++.. ...|..+ |.. .+++
T Consensus 19 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~-~r~~ 97 (497)
T 2g39_A 19 AEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDST-LRKA 97 (497)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHH-HHHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCHH-HHHH
Confidence 3456789999999999864 3454444444322222455431 2233322 222 3344
Q ss_pred HhCCCCEEEEc--chHHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006164 502 VRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (658)
Q Consensus 502 ~~~GI~vTlI~--DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvNK 542 (658)
.+.|- ++|++ .+.+..++. ++|..|+-|...-.+|.+.-.
T Consensus 98 i~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 144 (497)
T 2g39_A 98 INAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT 144 (497)
T ss_dssp HHTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC
T ss_pred HHcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 55553 34432 344443433 489999999999999987653
No 174
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=41.99 E-value=41 Score=33.16 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=42.6
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc----------chHHHHHhh--hcc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EVT 524 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~Vd 524 (658)
.||.-|+++.++.+|.... .+..++|..+=|.|...+.+. -.+.||++..+. |..+...+. ++|
T Consensus 16 ~vl~SG~gsnl~all~~~~-~~~~~eI~~Vis~~~a~~~~~---A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~D 91 (215)
T 3da8_A 16 VVLASGTGSLLRSLLDAAV-GDYPARVVAVGVDRECRAAEI---AAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPD 91 (215)
T ss_dssp EEEESSCCHHHHHHHHHSS-TTCSEEEEEEEESSCCHHHHH---HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCChHHHHHHHHHHh-ccCCCeEEEEEeCCchHHHHH---HHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCC
Confidence 3555588999977665543 233456665555554444443 356799998885 234444554 578
Q ss_pred EEEEcc
Q 006164 525 RVFLGA 530 (658)
Q Consensus 525 ~VivGA 530 (658)
.+++-+
T Consensus 92 livlag 97 (215)
T 3da8_A 92 LVVSAG 97 (215)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 877744
No 175
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=41.97 E-value=1.6e+02 Score=29.82 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=53.5
Q ss_pred CCCEEE--eeCChHHHHHHHHH--HHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEcc----------hH
Q 006164 454 DGDVLL--TYGSSSAVEMILQH--AHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHI----------NA 515 (658)
Q Consensus 454 dgdvIL--T~g~SsaV~~vL~~--A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~-vTlI~D----------sA 515 (658)
...+++ |.|-+.+++.+++- ....|+ .-+|++.+ |.+.|... .+...|++ +..+.. ..
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS--PTWENHNG--VFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEE--SCCTHHHH--HHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcC--CCcHHHHH--HHHHcCCceeEEEeeecCCCCccCHHH
Confidence 457778 88888787666432 223341 03455553 56656443 34456887 766642 12
Q ss_pred HHHHhhh---ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 516 ISYIIHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 516 v~~iM~~---Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+-..+.+ -.++++=+.---..|.++..-=-..++-+|+.|++.+++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 221 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 221 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3333332 123332233323334433332222577788999987765
No 176
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=41.61 E-value=1e+02 Score=25.89 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~ 554 (658)
....+|+|+|..+.. ...+...|...|+.|....+. ++..+-. ..|.|| +.+. -|--.+..+-+.
T Consensus 16 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~~~ 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEK 83 (137)
T ss_dssp TTCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHHhc
Confidence 456788888877654 234456677788888766543 2222222 467777 3322 243344444433
Q ss_pred C-CCCeEeecccc
Q 006164 555 F-HIPVLVCCEAY 566 (658)
Q Consensus 555 ~-~VPVyV~aety 566 (658)
. ++|+++++...
T Consensus 84 ~~~~~ii~ls~~~ 96 (137)
T 2pln_A 84 HSSIVVLVSSDNP 96 (137)
T ss_dssp STTSEEEEEESSC
T ss_pred CCCccEEEEeCCC
Confidence 5 89999987643
No 177
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=41.08 E-value=2.9e+02 Score=30.58 Aligned_cols=94 Identities=23% Similarity=0.189 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhc------cCCCEEEeeCC---hHHHHHHHHHH-HHcCCeeEE---EEeCCCCCchHHHHHHHHHhCCC
Q 006164 440 ADRVIVKHAVTKI------RDGDVLLTYGS---SSAVEMILQHA-HELGKQFRV---VIVDSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 440 a~~~Ia~~a~~~I------~dgdvILT~g~---SsaV~~vL~~A-~e~gk~f~V---iV~ESRP~~EG~~La~eL~~~GI 506 (658)
..+.|+++++++| +|| -.|=+|- ..+|...|..- .+.+..-.+ -+.+ . ...|.+.|+
T Consensus 249 ~~~~IA~~~a~~i~~~g~~~dG-~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d--------~-~~~l~e~G~ 318 (509)
T 1xr4_A 249 RELLIARQAANVIEHSGYFCDG-FSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITG--------T-MVDLHEKGL 318 (509)
T ss_dssp HHHHHHHHHHHHHHTTSCCSTT-EEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECH--------H-HHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCcCCCC-CEEEeccChHHHHHHHHhhhhcccceeecccccCCcCC--------c-cHhHHhCCC
Confidence 3467999999999 999 4455554 45677777664 334433333 1111 1 256667664
Q ss_pred -----CEEEEcchHHH-----------------------HHhhhccEEEEcceeEecCCCeeccc
Q 006164 507 -----SCTYTHINAIS-----------------------YIIHEVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 507 -----~vTlI~DsAv~-----------------------~iM~~Vd~VivGAdaVlaNG~VvNKi 543 (658)
+++-....+.. +...+.|..|+||=-|-.+|.+.+-.
T Consensus 319 i~~~~~~~~f~~g~~~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ldiai~galevD~~G~vn~~~ 383 (509)
T 1xr4_A 319 IKALLDTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMT 383 (509)
T ss_dssp BSCEEEEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSB
T ss_pred ccCCcceeEeeccHHHHHHhCCcceEEeccccccCcchhhhhcCCCeEEeeeEEEccCCceeeee
Confidence 12111111110 23346799999999999888887766
No 178
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=41.04 E-value=1.1e+02 Score=25.90 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=48.9
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhC
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~ 555 (658)
..+|+|+|..+.. ...+...|.+.|+.|....+. ++..+-. ..|.||+..+ +.+| .-|.-.+..+-+..
T Consensus 5 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~----~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSKFQ-AKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEG----MDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSS----CCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCC----CCHHHHHHHHHhCC
Confidence 4578888877654 334456777888888766554 2333322 4788888653 2221 23444455555557
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|+++++...
T Consensus 78 ~~~ii~ls~~~ 88 (140)
T 3h5i_A 78 ELPVVFLTAHT 88 (140)
T ss_dssp CCCEEEEESSS
T ss_pred CCCEEEEECCC
Confidence 89999987644
No 179
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=40.79 E-value=1.5e+02 Score=30.42 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=53.5
Q ss_pred CEEEeeCChHHHHHHHH--HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--
Q 006164 456 DVLLTYGSSSAVEMILQ--HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~--~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-- 521 (658)
.+++|.|.+.++..+++ .....| -+|++.+ |.+.+.. ..+...|..+..+.- ..+-..+.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~g--d~Vlv~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPK--AKVAISD--PSWENHR--ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTT--CCEEEEE--SCCHHHH--HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCC--CEEEEeC--CCcHhHH--HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 67888888888766533 223333 3455543 6666643 334457887777642 12333333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-+++++=...--..|.+++.---..++-+|+.|++.+++
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 1223333222222334444444444677788999987776
No 180
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=40.72 E-value=2.7e+02 Score=27.29 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=34.1
Q ss_pred CCCCEEEE--cch---HHHHHhhhccEEEEcceeEecCCCeecc-cchHHHHHHHHhCCCCeEeecc
Q 006164 504 KGLSCTYT--HIN---AISYIIHEVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 504 ~GI~vTlI--~Ds---Av~~iM~~Vd~VivGAdaVlaNG~VvNK-iGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.|++++.. ..+ .+-.+..++|.+++|+..- |.+-.. .|+..-.+ .++-.+||+|+=+
T Consensus 244 ~~~~~~~~~~~g~~~~~I~~~a~~adliV~G~~~~---~~~~~~l~Gsv~~~v-l~~~~~pVlvv~~ 306 (309)
T 3cis_A 244 PNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGR---GGYAGMLVGSVGETV-AQLARTPVIVARE 306 (309)
T ss_dssp TTSCEEEEEESSCHHHHHHHHHTTCSEEEEESSCS---SCCTTCSSCHHHHHH-HHHCSSCEEEECC
T ss_pred CCCcEEEEEEcCCHHHHHHHhhCCCCEEEECCCCC---CCccccccCcHHHHH-HhcCCCCEEEeCC
Confidence 48877653 222 2333334899999999752 222222 46555545 4667899999854
No 181
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=40.60 E-value=25 Score=36.24 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
-|.++.+-....+..++.++.+.|.+.-|++.+.-+..+-.++...+.+. |+. +|-.+.++.+.+...+...-...+
T Consensus 72 vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~--liGPnc~Gii~p~~~~~~~~~~~~ 149 (305)
T 2fp4_A 72 ATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR--LIGPNCPGVINPGECKIGIMPGHI 149 (305)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE--EECSSSCEEEETTTEEEESSCGGG
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE--EEeCCCCeEecccccceeeccccC
Confidence 46777776777777889999998887667777777766555777777777 874 676777666655432222111222
Q ss_pred ecCC--CeecccchHHHHHH--HHhCCCCeEee
Q 006164 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLVC 562 (658)
Q Consensus 534 laNG--~VvNKiGT~~lAl~--Ak~~~VPVyV~ 562 (658)
..-| +++++.||+..+++ +...++.|--+
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~ 182 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLC 182 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEecchHHHHHHHHHHHhcCCCeeEE
Confidence 3334 57899999988876 66678887543
No 182
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=40.54 E-value=1.7e+02 Score=29.61 Aligned_cols=96 Identities=9% Similarity=0.018 Sum_probs=52.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhh-------hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIH-------EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~-------~Vd~ 525 (658)
+.|++-+-+.++..+++.+...| -.|++.+ |.+.+ +...+...|+++..+. | ..+-..+. ++..
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~~~g--d~v~~~~--~~~~~--~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLLGAE--DAIISDA--LNHAS--IIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTT--CEEEEET--TCCHH--HHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEE
T ss_pred cEEEeCChHHHHHHHHHHHcCCC--CEEEEcc--hhHHH--HHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceE
Confidence 45555443556655555443333 3555533 44432 2234567899888875 2 23344444 3445
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++ ..---..|.+.. -..++-+|+.|++.+++
T Consensus 181 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 212 (401)
T 1fc4_A 181 IAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMV 212 (401)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEE
T ss_pred EEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEE
Confidence 554 333334565555 46677789999986665
No 183
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=40.21 E-value=55 Score=32.71 Aligned_cols=98 Identities=19% Similarity=0.108 Sum_probs=56.1
Q ss_pred CCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEcc
Q 006164 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGA 530 (658)
+.+||..|-+.-|..- ++.+.++| ++|+++.-++.. .++.+.... | ..+..++..+|.||--|
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 5678888876555433 33444555 567776555432 344443321 2 34556677788877655
Q ss_pred eeEecCCC------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 531 SSVLSNGT------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 531 daVlaNG~------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
-....+.. -.|-.||..+.-+|+.+++.-+|.+-+
T Consensus 86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 32211111 136679999999999999876665544
No 184
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=40.19 E-value=39 Score=33.40 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=54.4
Q ss_pred CEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--hHHHHHhhhccEEEEccee
Q 006164 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 456 dvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--sAv~~iM~~Vd~VivGAda 532 (658)
.+||..|-+.-+..- ++.+.++| .+|+++.-++... . |. ++.+..... ..+..++..+|.||--|-.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~----~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNK--A----IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC-------------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCcc--c----CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 468888876555433 34444555 4677765543221 1 21 554433222 3445556677777765433
Q ss_pred EecC----CCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 533 VLSN----GTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 533 VlaN----G~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
...+ ---.|-.||..+.-+|+..+++-+|.+-
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2111 0124678999999999999999555443
No 185
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=39.63 E-value=1.1e+02 Score=30.85 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCC-EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHH---hh-
Q 006164 454 DGD-VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYI---IH- 521 (658)
Q Consensus 454 dgd-vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~i---M~- 521 (658)
... +++|.|-+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+... -+..+ +.
T Consensus 86 ~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 159 (389)
T 1gd9_A 86 PKTEIMVLLGANQAFLMGLSAFLKDG--EEVLIPT--PAFVSYAP--AVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 159 (389)
T ss_dssp TTTSEEEESSTTHHHHHHHTTTCCTT--CEEEEEE--SCCTTHHH--HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred CCCeEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence 346 8888888888876665553333 3566543 44444332 234468887777521 12222 22
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ ..---..|.++..-=-..++-+|+.|++.+++
T Consensus 160 ~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 160 KTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2334443 21111234433322233466688999987776
No 186
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=39.49 E-value=2.3e+02 Score=25.98 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 131 ~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~ 166 (198)
T 2xbl_A 131 NILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLE 166 (198)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEE
Confidence 445667888889999999998776777777888874
No 187
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=39.46 E-value=26 Score=34.51 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH---HHHHhhhccEEEEcceeEecCCCe-ecccchHHHHHH--
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTV-CSRVGTACVAMV-- 551 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA---v~~iM~~Vd~VivGAdaVlaNG~V-vNKiGT~~lAl~-- 551 (658)
....+|.|+.-.|...-..+.+.|...|++++++.-.. +...+.++|.+|+.--..-..+.. ..... ..+.++
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~-~~~~~i~~ 88 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLK-YEFQLIEE 88 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHH-HHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHH-HHHHHHHH
Confidence 45678999998887766677789999999998765332 122345778776643211111110 11111 223333
Q ss_pred HHhCCCCeEeecc
Q 006164 552 AYGFHIPVLVCCE 564 (658)
Q Consensus 552 Ak~~~VPVyV~ae 564 (658)
|...++|++-+|=
T Consensus 89 ~~~~~~PiLGIC~ 101 (239)
T 1o1y_A 89 ILKKEIPFLGICL 101 (239)
T ss_dssp HHHHTCCEEEETH
T ss_pred HHHCCCCEEEEch
Confidence 3456899997774
No 188
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=39.43 E-value=99 Score=25.83 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=48.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEE-Ecch--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTl-I~Ds--Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
....+|+|+|..+.. ...+...|.+.|+.+.. ..+. ++.++-. ..|.||+..+- .+| .-|.-.+..+-+
T Consensus 7 ~~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~~ 79 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLA-AATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLAA 79 (140)
T ss_dssp -CCCEEEEECCBHHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHHH
T ss_pred CCCceEEEEECCHHH-HHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHHh
Confidence 356788888877654 33445667778998875 4432 3333322 57999887542 111 123334444444
Q ss_pred hCCCCeEeecccc
Q 006164 554 GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 80 ~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 80 GCNLPIIFITSSQ 92 (140)
T ss_dssp HSCCCEEEEECCC
T ss_pred CCCCCEEEEecCC
Confidence 4789999987644
No 189
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=39.43 E-value=1.2e+02 Score=31.29 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=54.7
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCCEEEEcch----------HHHHHhh
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vTlI~Ds----------Av~~iM~ 521 (658)
....+++|.|.+.++..+++.+.+.| -+|++. +|.+.|... .+. ..|+.+..+... .+-..+.
T Consensus 107 ~~~~i~~~~G~~~ai~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 180 (428)
T 1iay_A 107 DPERVVMAGGATGANETIIFCLADPG--DAFLVP--SPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAYE 180 (428)
T ss_dssp CTTSCEEEEHHHHHHHHHHHHHCCTT--CEEEEE--SSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHH
T ss_pred ChhhEEEccChHHHHHHHHHHhCCCC--CeEEEc--cCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHHH
Confidence 34567888887778766665554333 356654 455655432 122 468887777421 2222332
Q ss_pred -------hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -------~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++ +.---..|.++.+-=-..++-+|+.|++.|++
T Consensus 181 ~~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 181 NAQKSNIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp HHHHTTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHhcCCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 2444544 22222235554432234566678899987775
No 190
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=39.32 E-value=1.3e+02 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.039 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG 529 (658)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 107 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 107 ELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp HHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 3345568888999999999998888888889998864
No 191
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=39.17 E-value=2.4e+02 Score=28.23 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=50.9
Q ss_pred CEEEeeCChHHHHHHHHH--HHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----h------HHHHHhh--
Q 006164 456 DVLLTYGSSSAVEMILQH--AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----N------AISYIIH-- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~--A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----s------Av~~iM~-- 521 (658)
.+++|.|.+.++..+++. ..+.|. +|++. .|.+.+.. ..+...|..+..+.- + .+-..+.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPES--GVWVS--DPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC--CEEEE--SSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCC--eEEEe--CCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 567777777777655432 223332 45554 36665543 334457888777743 2 2333333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-.++++=..---..|.+++.---..++-+|+.|++.+++
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 1123333222222233333333333677788899987775
No 192
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=39.07 E-value=1.3e+02 Score=28.06 Aligned_cols=106 Identities=10% Similarity=0.039 Sum_probs=62.5
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc-hHHHHHhhhccEEEEc
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLG 529 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~Vd~VivG 529 (658)
.+.+||..|-+.-+.. +++.+.+++...+|+++.-++. . ..+| ..++.+... .| ..+..++..+|.||--
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~-~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----G-KEKI-GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----H-HHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----c-hhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 3567888887765543 3444555543567877754431 1 1222 345544332 12 4667778889998876
Q ss_pred ceeEecC-----------CC----------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 530 ASSVLSN-----------GT----------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 530 AdaVlaN-----------G~----------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
|-..... -. -+|-.|+..+.-+|+.+++.-+|...+
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6432110 11 256789999999999888876665443
No 193
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=38.78 E-value=1.1e+02 Score=31.39 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHh-hhcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVT 524 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vd 524 (658)
..+++|.|.+.++..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+... .+-..+ +++.
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPG--DYVLLP--DPGYTDYLAG--VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTK 183 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCSSHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHHH--HHHCCCEEEEeccCcccCcCCHHHHHHhhccCce
Confidence 467888887778876666553333 355554 3555554433 34568877766421 111122 3555
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.|++- .--...|.++..-=-..++-+|+.|++.+++
T Consensus 184 ~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 219 (404)
T 2o1b_A 184 LIYLT-YPNNPTGSTATKEVFDEAIAKFKGTDTKIVH 219 (404)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 66553 2212234443321123467788999987775
No 194
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=38.62 E-value=1.4e+02 Score=26.38 Aligned_cols=98 Identities=11% Similarity=0.161 Sum_probs=52.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--ch-HHHHH-hhhccEEEEcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--IN-AISYI-IHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--Ds-Av~~i-M~~Vd~VivGA 530 (658)
+..|+..|++..=..+.+.+.+.| +.|+++|..|... .+.+.++...|+.+.+-. |. .+... +.++|.||+..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDD-IKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHH-HHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHH-HHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 345777898876666666666655 4677777664211 112233445677654432 11 12222 55778777665
Q ss_pred eeEecCCCeecccchHHHHHHHHhC-C-CCeEeecc
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGF-H-IPVLVCCE 564 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~-~-VPVyV~ae 564 (658)
+. ..-...+++.|+.. + ..+++.+.
T Consensus 80 ~~---------d~~n~~~~~~a~~~~~~~~ii~~~~ 106 (153)
T 1id1_A 80 DN---------DADNAFVVLSAKDMSSDVKTVLAVS 106 (153)
T ss_dssp SC---------HHHHHHHHHHHHHHTSSSCEEEECS
T ss_pred CC---------hHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 32 12235677788875 4 34554443
No 195
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=38.55 E-value=1.6e+02 Score=28.33 Aligned_cols=37 Identities=8% Similarity=-0.177 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHH-----------HHhhhccEEEE
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAIS-----------YIIHEVTRVFL 528 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~-----------~iM~~Vd~Viv 528 (658)
.+=.++++.+.+.|+++..|++..-+ .+.+.+|.+|.
T Consensus 122 ~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 122 TVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 34567778999999999999998777 67778998885
No 196
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=38.50 E-value=71 Score=32.18 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCCeEeecccccc
Q 006164 547 CVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aetyKf 568 (658)
...++|+..+||++.++..+-+
T Consensus 115 ~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 115 AGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHHHhhCCCEEEEeccccc
Confidence 3567889999999988755543
No 197
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=38.39 E-value=2e+02 Score=29.69 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=53.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
+.|++-+.+.++..++....+.| -+|++. .|.+.+... .. .+...|+.+.++.. ..+-..+. ++..|++
T Consensus 79 ~~i~~~~g~~ai~~~~~~l~~~g--d~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l- 153 (404)
T 1e5e_A 79 ACVATSSGMGAIAATVLTILKAG--DHLISD--ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYF- 153 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEE-
T ss_pred cEEEeCChHHHHHHHHHHHhCCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEE-
Confidence 45555555556655554443333 356654 566655333 22 36678999988853 23333343 3344443
Q ss_pred ceeEecCCCeecccchHHHHHHHHh-CCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~-~~VPVyV 561 (658)
..---..|.+.. --.++-+|++ |++.|++
T Consensus 154 ~~p~NptG~v~~---l~~i~~la~~~~~~~li~ 183 (404)
T 1e5e_A 154 ETPANPTLKIID---MERVCKDAHSQEGVLVIA 183 (404)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHhhcCCEEEE
Confidence 221123454443 3567778999 9998776
No 198
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=38.38 E-value=41 Score=32.77 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=54.9
Q ss_pred EEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEccee
Q 006164 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAda 532 (658)
+||..|-+.-+...| +.+.+. ...+|+++.-+|.. +..|...|+.+.... | ..+..++..+|.||.-|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~-----~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEK-----VPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGG-----SCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred EEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHH-----HHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 467777665544333 333333 12345555333321 112334555544332 2 3456667777777765432
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
. +....|-.|+..+.-+|+..+++-+|...+|
T Consensus 76 ~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 76 I--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp C--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred C--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 1 1112355788888888999998877776654
No 199
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=38.36 E-value=55 Score=29.71 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=58.0
Q ss_pred CEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cc-hHHHHHhhhccEEEEcce
Q 006164 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~Vd~VivGAd 531 (658)
.+||..|-+.-+.. +++.+.++| .+|+++.-++... ..+...++.+... .| ..+..++..+|.||--|-
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRL-----PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGS-----CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhhc-----ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 47888887665543 344555555 5677765443210 0111234433222 12 355667778888876553
Q ss_pred eEec-CCCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 532 SVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 532 aVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.... +-.-+|-.|+..+.-+|+.+++.-+|..-+.
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 2110 1122566789999888998888766655444
No 200
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=38.24 E-value=84 Score=32.60 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=53.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCCEEEEcch--HHHHHhh-hccEEEEcc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGA 530 (658)
+.|++-+.+.++..+|+ ..+.| -+|++.+ |.+.|..-. ..+...|+.++++... .+-..+. ++..|++ .
T Consensus 72 ~~i~~~sGt~a~~~al~-~~~~g--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~-~ 145 (393)
T 1n8p_A 72 YGLAFSSGSATTATILQ-SLPQG--SHAVSIG--DVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWI-E 145 (393)
T ss_dssp EEEEESCHHHHHHHHHH-TSCSS--CEEEEES--SCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEE-C
T ss_pred cEEEECChHHHHHHHHH-HcCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEE-E
Confidence 45555444566666665 43333 3666655 666664332 2456679999998632 3333333 3334443 2
Q ss_pred eeEecCCCeecccchHHHHHHHHhC----CCCeEe
Q 006164 531 SSVLSNGTVCSRVGTACVAMVAYGF----HIPVLV 561 (658)
Q Consensus 531 daVlaNG~VvNKiGT~~lAl~Ak~~----~VPVyV 561 (658)
..--..|.+.. --.++-+|+.| +++|+|
T Consensus 146 ~~~nptG~~~~---l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 146 TPTNPTLKVTD---IQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCCcceecC---HHHHHHHHHHhCCCCCCEEEE
Confidence 22223344442 35677788999 888776
No 201
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=38.16 E-value=1.5e+02 Score=29.30 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred CEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCc-----hHHHHHHHHH---hCCCCEEEE--cc-hHHHHHhh--
Q 006164 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKH-----EGKLLLRRLV---RKGLSCTYT--HI-NAISYIIH-- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~-----EG~~La~eL~---~~GI~vTlI--~D-sAv~~iM~-- 521 (658)
.+||..|-+.-+.. +++.+.++| .+|+++.-.+.. +....+.+|. ..++.+... .| .++..++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 46788887655533 334445555 466666422211 0112223333 234433222 12 24555666
Q ss_pred hccEEEEcceeEecC--------CCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 522 EVTRVFLGASSVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 522 ~Vd~VivGAdaVlaN--------G~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
.+|.||--|-..... ---.|-.||..+.-+|+.+++.-+|.+-+
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 132 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS 132 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 456555443211000 00135678999998999999876665544
No 202
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=38.10 E-value=1.4e+02 Score=25.17 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=46.0
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH---
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak--- 553 (658)
..+|+|+|..+.. ...+...|.+.|..|....+..-+ .+-. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTV-AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCCC
Confidence 4578888877654 233456677788887766554322 2222 5788888543 3332 24444444433
Q ss_pred hCCCCeEeecccc
Q 006164 554 GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 76 ~~~~pii~~t~~~ 88 (136)
T 3t6k_A 76 TKTLPILMLTAQG 88 (136)
T ss_dssp GTTCCEEEEECTT
T ss_pred cCCccEEEEecCC
Confidence 2379999987643
No 203
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=38.08 E-value=3.3e+02 Score=27.43 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=39.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---HHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
+|++.+ |.+.+.... +...|+.+..+..+ .+-.++. ++..|++ ..---..|.+.. --.++-+|+
T Consensus 134 ~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~ 205 (401)
T 2bwn_A 134 IIYSDS--LNHASMIEG--IKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAF-ESVYSMDGDFGP---IKEICDIAE 205 (401)
T ss_dssp EEEEET--TCCHHHHHH--HHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEE-ESBCTTTCCBCC---HHHHHHHHH
T ss_pred EEEECc--hhhHHHHHH--HHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEE-ecCcCCCCCcCC---HHHHHHHHH
Confidence 555543 555544433 34478888888632 3344444 2333333 222223355554 356777899
Q ss_pred hCCCCeEe
Q 006164 554 GFHIPVLV 561 (658)
Q Consensus 554 ~~~VPVyV 561 (658)
+|++.++|
T Consensus 206 ~~~~~li~ 213 (401)
T 2bwn_A 206 EFGALTYI 213 (401)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99987665
No 204
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=37.95 E-value=1.2e+02 Score=30.63 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------------HHHH
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------------AISY 518 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------------Av~~ 518 (658)
..+++|.|-+.++..+++.+.+.|. +|++. .|.+.+... .+...|..+..+... -+..
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGD--EVIIM--VPFYDCYEP--MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTC--EEEEE--ESCCTTHHH--HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEEeccccccccccccccCCcCCHHH
Confidence 5688888877888776666544343 45553 444444332 344568777666421 1222
Q ss_pred H---hh-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 519 I---IH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 519 i---M~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+ +. ++..|++- .---..|.++.+---..++-+|+.|++.+++
T Consensus 160 l~~~~~~~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 205 (410)
T 3e2y_A 160 LESKFSSKTKAIILN-TPHNPLGKVYTRQELQVIADLCVKHDTLCIS 205 (410)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhhcCCCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 2 21 34445442 1112334444433344577789999998776
No 205
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=37.87 E-value=1.6e+02 Score=28.84 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=36.3
Q ss_pred HHHHhCCCC---EEEEcchHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecc
Q 006164 499 RRLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 499 ~eL~~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
..+.+.|++ +.+...+..-.++. ++|.+++|+..- |.+-. -.|+..-. +.++-.+||+|+=+
T Consensus 235 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~---~~~~~~~~Gsv~~~-vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGR---TGLSAAFLGNTAEQ-LIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSC---CSTHHHHHHHHHHH-HHTTCCSEEEEECC
T ss_pred HHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCc---cCCccccccHHHHH-HHhhCCCCEEEECC
Confidence 344567764 45555544444443 689999998742 22221 24544433 34667899999843
No 206
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=37.86 E-value=2.8e+02 Score=28.86 Aligned_cols=90 Identities=11% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHhccC--CCEEEeeCC---hHHHHHHHHHHHHc-------------------CCeeEEEEeCCCCC-chHHHHH
Q 006164 444 IVKHAVTKIRD--GDVLLTYGS---SSAVEMILQHAHEL-------------------GKQFRVVIVDSRPK-HEGKLLL 498 (658)
Q Consensus 444 Ia~~a~~~I~d--gdvILT~g~---SsaV~~vL~~A~e~-------------------gk~f~ViV~ESRP~-~EG~~La 498 (658)
|.+.+++.... +..+|.|+. |+++..++..+... ...|.|+.+||.=. -|=.++.
T Consensus 46 iLrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~ 125 (308)
T 3fwk_A 46 LINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFI 125 (308)
T ss_dssp HHHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHH
Confidence 55566666654 567777765 35566666665310 14788998887654 4677777
Q ss_pred HHHHh-CCCCEEEEcc-------hHHHHHhh---hccEEEEcceeE
Q 006164 499 RRLVR-KGLSCTYTHI-------NAISYIIH---EVTRVFLGASSV 533 (658)
Q Consensus 499 ~eL~~-~GI~vTlI~D-------sAv~~iM~---~Vd~VivGAdaV 533 (658)
.++.+ .|+++..+.- .+...+++ .++++|.|.-+-
T Consensus 126 d~~~~~ygL~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 126 EETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHHHHHTTEEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 66654 5887766532 13334443 467888887655
No 207
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=37.85 E-value=29 Score=33.92 Aligned_cols=50 Identities=8% Similarity=-0.029 Sum_probs=30.4
Q ss_pred HHHhhh-ccEEEEcceeEecC---CCeecccchHHHHHHHHhCCCCeEeecccc
Q 006164 517 SYIIHE-VTRVFLGASSVLSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 517 ~~iM~~-Vd~VivGAdaVlaN---G~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
..++.. +|.||--|-....+ ---.|-.||..+.-+|+..++.-+|.+-+.
T Consensus 57 ~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~ 110 (286)
T 3gpi_A 57 ASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST 110 (286)
T ss_dssp TTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEG
T ss_pred HHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEccc
Confidence 334444 77777554211111 112467899999999999998877665543
No 208
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=37.61 E-value=98 Score=29.35 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHh--ccCCCEEEeeCC--hH-HHHHHHHHHHHcCCeeEEEEeC----CCCC-----chHHHHHHHHHhCC
Q 006164 440 ADRVIVKHAVTK--IRDGDVLLTYGS--SS-AVEMILQHAHELGKQFRVVIVD----SRPK-----HEGKLLLRRLVRKG 505 (658)
Q Consensus 440 a~~~Ia~~a~~~--I~dgdvILT~g~--Ss-aV~~vL~~A~e~gk~f~ViV~E----SRP~-----~EG~~La~eL~~~G 505 (658)
....|.++..++ +....+|+.|-. +. -...++..+++.|+. |++.- ...+ ..+..|. -...|
T Consensus 24 ~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~gk~--v~lP~~~~~~~~m~f~~~~~~~~L~--~~~~g 99 (187)
T 1ydm_A 24 KTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQ--VCIPKCHPDTKKMQFRTYQTDDQLE--TVYAG 99 (187)
T ss_dssp HHHHHHHHHHTSHHHHTCSEEECCCCCTTSCCCHHHHHHHHHTTCE--EEEECC---CCCCCEEECCCCTTHH--HHHTT
T ss_pred HHHHHHHHHHhCHHhhhCCEEEEECCCCCCCCHHHHHHHHHHCCCE--EEEeEEecCCCcEEEEEeCCCCccC--cCCCC
Confidence 334455555443 356789999842 11 122457778887774 44432 2211 1111222 23467
Q ss_pred CCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchH
Q 006164 506 LSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA 546 (658)
Q Consensus 506 I~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~ 546 (658)
|.--.- +..-..-..++|.|||.+=++-.+|.=+..=|.|
T Consensus 100 i~EP~~-~~~~~~~~~~iDlvivP~vafD~~G~RLG~GgGy 139 (187)
T 1ydm_A 100 LLEPVI-EKTKEVNPSQIDLMIVPGVCFDVNGFRVGFGGGY 139 (187)
T ss_dssp SCCCC---CCCCCCGGGCCEEECCCSEEETTSCEECCSCCS
T ss_pred CCCCCC-cccccCCccCCCEEEeCCeEECCCCCcccCCccH
Confidence 632110 0000001347899999999999999766666555
No 209
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=37.60 E-value=1.1e+02 Score=25.79 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=46.1
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
..+|+|+|..+.. ...+...|...|+.+....+.. +..+-. ..|.||+..+ +.+. -|--.+..+-+...
T Consensus 4 ~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDN-CQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVTT 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCCC
Confidence 4578888877643 3344566777788877665432 222222 4788888654 3321 24334444444458
Q ss_pred CCeEeecccc
Q 006164 557 IPVLVCCEAY 566 (658)
Q Consensus 557 VPVyV~aety 566 (658)
+|+++++...
T Consensus 76 ~~ii~ls~~~ 85 (136)
T 2qzj_A 76 CPIVYMTYIN 85 (136)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEEcCC
Confidence 9999887543
No 210
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=37.53 E-value=98 Score=31.19 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh-hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~V 523 (658)
..+++|.|-+.++..+++.+.+.|. +|++. .|.+.+... .+...|+.+..+... .+-..+. ++
T Consensus 91 ~~v~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 164 (388)
T 1j32_A 91 DNILVTNGGKQSIFNLMLAMIEPGD--EVIIP--APFWVSYPE--MVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKT 164 (388)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTC--EEEEE--SSCCTHHHH--HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTTE
T ss_pred hhEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHH--HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcCc
Confidence 4678888777788766666544443 55554 345555433 344578888777532 1222222 23
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..|++ ..---..|.++.+-=-..++-+|+.|++.+++=
T Consensus 165 ~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (388)
T 1j32_A 165 KLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202 (388)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33433 221112244333222235666888999887763
No 211
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=37.43 E-value=2.3e+02 Score=28.53 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=53.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhh-----ccEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-----VTRVF 527 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-----Vd~Vi 527 (658)
++++|.|-+.++..+++.+.+.| -.|++. .|.+.+...+ +...|..+..+.. ..+-..+.+ +..|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~g--d~V~~~--~p~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRN--DYILLD--ERDHASIIDG--SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTT--CEEEEE--TTCCHHHHHH--HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEC--CccCHHHHHH--HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEE
Confidence 57777777777766665553333 345554 4555544333 4457888777752 233444443 33444
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.. .--..|.+.. --.++-+|++|++.+++
T Consensus 179 ~~~-~~nptG~~~~---~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 179 TDG-IFSMEGDIVN---LPELTSIANEFDAAVMV 208 (398)
T ss_dssp EES-BCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred EeC-CCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 322 1122355443 35677789999987665
No 212
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=37.37 E-value=9.7 Score=39.84 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=44.0
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc
Q 006164 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA 530 (658)
.+..|.+|+..|.+..-.++++.|++.| ++|++++..|...+..++ +.-+...+....++-.+.+++|.|..+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~~~~~~~a----d~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKNSPCAQVA----DIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTTCTTTTTC----SEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCCchHHhC----CceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 3457889999999887667788887665 578888876654333222 1100011111123445556777776664
Q ss_pred e
Q 006164 531 S 531 (658)
Q Consensus 531 d 531 (658)
+
T Consensus 84 e 84 (389)
T 3q2o_A 84 E 84 (389)
T ss_dssp C
T ss_pred c
Confidence 4
No 213
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=37.36 E-value=2.1e+02 Score=29.31 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=55.5
Q ss_pred CCEEEeeCCh---HHHHHHHHHHHHc---CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chHHHHHhhhccEEE
Q 006164 455 GDVLLTYGSS---SAVEMILQHAHEL---GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVF 527 (658)
Q Consensus 455 gdvILT~g~S---saV~~vL~~A~e~---gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsAv~~iM~~Vd~Vi 527 (658)
..+||++|-| ..+...+.++.+. ...+.|++.-.+... ..+...+.+.++++.+.. ..-+..+|..+|.||
T Consensus 180 ~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~--~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI 257 (365)
T 3s2u_A 180 RVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHA--EITAERYRTVAVEADVAPFISDMAAAYAWADLVI 257 (365)
T ss_dssp CCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTH--HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEE
T ss_pred CcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcccc--ccccceecccccccccccchhhhhhhhccceEEE
Confidence 3578888765 2344455555432 234566655444332 344566778888887764 234677889999886
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
. +.|...++- +-.+|+|++++
T Consensus 258 ~-------------raG~~Tv~E-~~a~G~P~Ili 278 (365)
T 3s2u_A 258 C-------------RAGALTVSE-LTAAGLPAFLV 278 (365)
T ss_dssp E-------------CCCHHHHHH-HHHHTCCEEEC
T ss_pred e-------------cCCcchHHH-HHHhCCCeEEe
Confidence 2 345444443 44579998865
No 214
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=37.30 E-value=3.4e+02 Score=27.42 Aligned_cols=56 Identities=14% Similarity=-0.064 Sum_probs=38.1
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEc---ceeEecCCCeecccchHHHH
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG---ASSVLSNGTVCSRVGTACVA 549 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivG---AdaVlaNG~VvNKiGT~~lA 549 (658)
.+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.- .+.+ .|....+.||.++.
T Consensus 154 ~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~--~~st~~~s~ta~~~ 212 (306)
T 1nri_A 154 PYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEIL--TGSSRLKSGTAQKM 212 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSS--TTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccc--cCcccchhHHHHHH
Confidence 34456678888899999999998777777789988753 2322 23344566665443
No 215
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=37.12 E-value=70 Score=33.85 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=51.0
Q ss_pred CEEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-H-HHHHhCCCCEEEEcch---HHHHHhh-hccEEEE
Q 006164 456 DVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~Viv 528 (658)
+.|++ +.+ .++..+|....+.| -+|++.+ |.+.|..- . ..|...|++++++... .+-..+. +..+|++
T Consensus 99 ~~i~~-ssGt~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~ 173 (415)
T 2fq6_A 99 GCVLF-PCGAAAVANSILAFIEQG--DHVLMTN--TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFL 173 (415)
T ss_dssp EEEEE-SSHHHHHHHHHHTTCCTT--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEE
T ss_pred eEEEe-CCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEE
Confidence 34554 444 34544444333333 3666654 56655443 3 2356789999998532 2222332 3334443
Q ss_pred cceeEe-cCCCeecccchHHHHHHHHh--CCCCeEee
Q 006164 529 GASSVL-SNGTVCSRVGTACVAMVAYG--FHIPVLVC 562 (658)
Q Consensus 529 GAdaVl-aNG~VvNKiGT~~lAl~Ak~--~~VPVyV~ 562 (658)
+.+. ..|.+. . --.|+-+|+. |+++|+|=
T Consensus 174 --e~~~NptG~v~-d--l~~I~~la~~~~~g~~livD 205 (415)
T 2fq6_A 174 --ESPGSITMEVH-D--VPAIVAAVRSVVPDAIIMID 205 (415)
T ss_dssp --ESSCTTTCCCC-C--HHHHHHHHHHHCTTCEEEEE
T ss_pred --ECCCCCCCEee-c--HHHHHHHHHhhcCCCEEEEE
Confidence 2222 224433 2 2568888999 99988773
No 216
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=36.96 E-value=56 Score=33.21 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH-----hhhccEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~Vd~VivG 529 (658)
...|+..|++..-..+.+.+.+.| . |+++|..|.. +. |.+.|+++.+- |..-... +.++|.|++-
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~-----~~-~~~~~~~~i~g-d~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KK-VLRSGANFVHG-DPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGH-----HH-HHHTTCEEEES-CTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhh-----hh-HHhCCcEEEEe-CCCCHHHHHhcChhhccEEEEc
Confidence 467888999877666666666544 4 8888877642 33 55678765443 3322222 3466777664
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+ +..-+..+++.||+++....+++
T Consensus 185 ~~---------~d~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 185 LE---------SDSETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp CS---------SHHHHHHHHHHHHTTCTTSEEEE
T ss_pred CC---------ccHHHHHHHHHHHHHCCCCeEEE
Confidence 32 23556778899999987655444
No 217
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=36.92 E-value=88 Score=30.16 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=56.0
Q ss_pred EEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEccee
Q 006164 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAda 532 (658)
+||..|-+.-+..-| +.+.++...++|+++.-++.. +..|...++.+.... | ..+..++..+|.||--|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK-----ASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----THHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH-----HhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 467777765554333 334333113567766544321 123445566543321 2 3556667778888754431
Q ss_pred EecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 533 VlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
- -+.-+|-.||..+.-+|+.+++.-+|...+
T Consensus 77 ~--~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 77 H--YDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred C--cCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1 111236778888888888888866665443
No 218
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=36.83 E-value=2e+02 Score=28.88 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHhh-hccE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd~ 525 (658)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+... .+-..+. ++..
T Consensus 93 ~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 166 (386)
T 1u08_A 93 DITVTAGATEALYAAITALVRNG--DEVICFD--PSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRL 166 (386)
T ss_dssp TEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEE
T ss_pred CEEEcCChHHHHHHHHHHhCCCC--CEEEEeC--CCchhHH--HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEE
Confidence 68888887778866666553333 3566544 4444433 2345578887777421 1222221 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 167 v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (386)
T 1u08_A 167 VILN-TPHNPSATVWQQADFAALWQAIAGHEIFVIS 201 (386)
T ss_dssp EEEE-SSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 4442 1111223333221124566788999987765
No 219
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=36.77 E-value=76 Score=30.53 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=9.5
Q ss_pred HHHHHHHcCCeeEEEEeCC
Q 006164 470 ILQHAHELGKQFRVVIVDS 488 (658)
Q Consensus 470 vL~~A~e~gk~f~ViV~ES 488 (658)
+++.+.+.|...+|+++++
T Consensus 20 l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 20 LLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp HHHHHHHTTCEEEEEECHH
T ss_pred HHHHHHHCCCEEEEEEChh
Confidence 3444444455555555444
No 220
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=36.36 E-value=2.5e+02 Score=28.78 Aligned_cols=113 Identities=9% Similarity=-0.077 Sum_probs=60.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc----
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA---- 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA---- 530 (658)
-.|..+|.+..-...+....+....++|+ |++..+.. ...++. +.||.+....|-.-..--.++|.|++..
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~-~~~~a~---~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR-AQAALD---KYAIEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH-HHHHHH---HHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH-HHHHHH---HhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 36888888765444444444234457765 56655432 223332 2365555555432222223678887743
Q ss_pred -------------eeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccc
Q 006164 531 -------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 531 -------------daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++.-=-..+--....+.-+|+..++.++.++-.+.|.+.+
T Consensus 100 h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~ 154 (357)
T 3ec7_A 100 HADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGY 154 (357)
T ss_dssp HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHH
T ss_pred HHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHH
Confidence 333333223344445556667888888885555566666544
No 221
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=36.34 E-value=89 Score=32.44 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHHhh----h
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~----~ 522 (658)
..++++|.|.+.++..+++.+.+.| -+|++. .|.+.+.. ..+...|+.+..+... -+..+.. +
T Consensus 118 ~~~v~~t~g~t~al~~~~~~l~~~g--d~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 191 (427)
T 3dyd_A 118 AKDVILTSGCSQAIDLCLAVLANPG--QNILVP--RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK 191 (427)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT
T ss_pred hHHEEEecCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC
Confidence 4577888888888876666654333 356654 36665544 3345678887766421 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
...|++- +.--..|.++.+----.++-+|+.|++.+++=
T Consensus 192 ~~~v~i~-~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~D 230 (427)
T 3dyd_A 192 TACLIVN-NPSNPCGSVFSKRHLQKILAVAARQCVPILAD 230 (427)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 2233321 11122344444333456777899999988763
No 222
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=36.19 E-value=1e+02 Score=30.59 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh---hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH---EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~---~V 523 (658)
..+++|.|.+.++..++..+.+.| -+|++.+ |.+.+.. ..+...|+++..+... .+-..+. ++
T Consensus 69 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 142 (354)
T 3ly1_A 69 PSILLTAGSSEGIRAAIEAYASLE--AQLVIPE--LTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGP 142 (354)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSC
T ss_pred HHEEEeCChHHHHHHHHHHHhCCC--CeEEECC--CCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCC
Confidence 467777777777766555543333 3566544 5555543 3344678888887532 3444443 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHh--CCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYG--FHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~--~~VPVyV 561 (658)
..|++ ..---..|.++..- .+.-+++. |++.+++
T Consensus 143 ~~v~l-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 178 (354)
T 3ly1_A 143 SIVYL-VNPNNPTGTITPAD---VIEPWIASKPANTMFIV 178 (354)
T ss_dssp EEEEE-ESSCTTTCCCCCHH---HHHHHHHTCCTTEEEEE
T ss_pred CEEEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCeEEEE
Confidence 56655 22222234433322 24444444 7766554
No 223
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=36.19 E-value=1.9e+02 Score=30.62 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=51.9
Q ss_pred EEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEcch---HHHHHhhhccEEEEcce
Q 006164 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIHEVTRVFLGAS 531 (658)
Q Consensus 458 ILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~~Vd~VivGAd 531 (658)
.+.++++ .++..+|..+.+.| -+|++. .|.+.|..- .. .+...|+.++++... ++...+..=.++|+ .+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~-~e 174 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAG--DSVVTT--DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLF-LE 174 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEE-EE
T ss_pred EEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEE-EE
Confidence 3444444 45555555443333 355554 455555433 32 677889999999633 33333432223333 22
Q ss_pred eE-ecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 532 SV-LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aV-laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.. -..|.+.. --.++-+|+.|+++++|=
T Consensus 175 ~p~NptG~~~d---l~~i~~la~~~g~~livD 203 (430)
T 3ri6_A 175 TISNPQLQVAD---LEALSKVVHAKGIPLVVD 203 (430)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTTTCCEEEE
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 22 22344432 346778899999998873
No 224
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=36.15 E-value=2.4e+02 Score=28.29 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=55.5
Q ss_pred CEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hcc
Q 006164 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (658)
Q Consensus 456 dvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 524 (658)
+.|+..+. +.++..++..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++.
T Consensus 65 ~~v~~~~sgt~al~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 140 (411)
T 3nnk_A 65 WTMLVDGTSRAGIEAILVSAIRPG--DKVLVPV--FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPR 140 (411)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCS
T ss_pred cEEEECCCcHHHHHHHHHHhcCCC--CEEEEec--CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCe
Confidence 33444444 456766666654333 3566654 555554455667778988887742 23444443 466
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.|++- ..=-..|.+.. --.|+-+|+.|++.+++
T Consensus 141 ~v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 141 LLLTV-QGDTSTTMLQP---LAELGEICRRYDALFYT 173 (411)
T ss_dssp EEEEE-SEETTTTEECC---CTTHHHHHHHHTCEEEE
T ss_pred EEEEe-CCCCCcceecc---HHHHHHHHHHcCCEEEE
Confidence 66653 22223444433 23577789999987776
No 225
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=36.14 E-value=89 Score=30.69 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=41.2
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-- 521 (658)
.||.-|+++.++.+|. +.+.|. .+.++|+ .+|...+.+.| .+.|||+.++.. ..+...++
T Consensus 6 avl~Sg~Gsnl~ali~-~~~~~~l~~eI~~Vis-n~~~a~v~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~ 80 (211)
T 3p9x_A 6 AIFASGSGTNAEAIIQ-SQKAGQLPCEVALLIT-DKPGAKVVERV---KVHEIPVCALDPKTYPSKEAYEIEVVQQLKEK 80 (211)
T ss_dssp EEECCTTCHHHHHHHH-HHHTTCCSSEEEEEEE-SCSSSHHHHHH---HTTTCCEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCchHHHHHHH-HHHcCCCCcEEEEEEE-CCCCcHHHHHH---HHcCCCEEEeChhhcCchhhhHHHHHHHHHhc
Confidence 4777788899976655 444453 2333333 46665444444 567999987752 23444454
Q ss_pred hccEEEEcc
Q 006164 522 EVTRVFLGA 530 (658)
Q Consensus 522 ~Vd~VivGA 530 (658)
++|.+|+-+
T Consensus 81 ~~Dliv~ag 89 (211)
T 3p9x_A 81 QIDFVVLAG 89 (211)
T ss_dssp TCCEEEESS
T ss_pred CCCEEEEeC
Confidence 578877654
No 226
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=35.93 E-value=79 Score=31.63 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhhhccE
Q 006164 455 GDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVTR 525 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~ 525 (658)
..+|+|-+-+.++..+|..+ ...| -+|++. .|.+.+.. .-+...|+.+.++... .+-..+.+=.+
T Consensus 54 ~~~~~~~~gt~a~~~~~~~~~~~~g--d~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 127 (374)
T 3uwc_A 54 PHAIGVGTGTDALAMSFKMLNIGAG--DEVITC--ANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAITDKTK 127 (374)
T ss_dssp SEEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--SSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCCTTEE
T ss_pred CcEEEeCCHHHHHHHHHHHcCCCCC--CEEEEC--CCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCCCCce
Confidence 35677766666776655554 3333 355554 34555543 3355679988888532 11111211123
Q ss_pred EEEcceeEecCCCeecccch----HHHHHHHHhCCCCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT----~~lAl~Ak~~~VPVyV~ 562 (658)
+|+ +.|..|+ ..++-+|+.|++.+++=
T Consensus 128 ~v~----------~~n~~G~~~~~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 128 AIM----------PVHYTGNIADMPALAKIAKKHNLHIVED 158 (374)
T ss_dssp EEC----------CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEE----------EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence 333 2234443 45777899999988863
No 227
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=35.69 E-value=1.4e+02 Score=24.05 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~V 557 (658)
.+|.|+|..+.. ...+...|...|+.+....+..-+ .+.. ..|.||+..+ +.+. -|--.+..+.+...+
T Consensus 2 ~~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAI-RRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred cEEEEEeCCHHH-HHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 367777776643 233446677778877766543322 2222 5788888543 3321 243344444455679
Q ss_pred CeEeecccc
Q 006164 558 PVLVCCEAY 566 (658)
Q Consensus 558 PVyV~aety 566 (658)
|+++++...
T Consensus 74 ~ii~~s~~~ 82 (121)
T 1zh2_A 74 PVIVLSARS 82 (121)
T ss_dssp CEEEEESCC
T ss_pred cEEEEECCC
Confidence 999886543
No 228
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=35.66 E-value=1.4e+02 Score=24.64 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=45.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHH-h
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-G 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-~ 554 (658)
...+|.++|..+.. ...+...|.+.|..+....+..-+. .+. ..|.||+..+-- + .-|.-.+..+-+ .
T Consensus 6 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~--~-----~~g~~~~~~l~~~~ 77 (130)
T 3eod_A 6 VGKQILIVEDEQVF-RSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP--R-----MNGLKLLEHIRNRG 77 (130)
T ss_dssp TTCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCC--C-----CCHHHHHHHHHhcC
Confidence 34578888876654 3344566778888877665543222 222 478888876532 2 123333443333 3
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 78 ~~~~ii~~t~~~ 89 (130)
T 3eod_A 78 DQTPVLVISATE 89 (130)
T ss_dssp CCCCEEEEECCC
T ss_pred CCCCEEEEEcCC
Confidence 479999987644
No 229
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=35.56 E-value=1.4e+02 Score=24.24 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=44.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~V 557 (658)
.+|+++|..+.. ...+...|...|..+....+..-+ ..+. ..|.||+..+ +.+. -|...+..+.+...+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVT-QARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERSTV 74 (122)
T ss_dssp CEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCCC
T ss_pred cEEEEEECCHHH-HHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCCC
Confidence 367777776643 334445677778877666543222 2222 4788888543 3322 244444444445679
Q ss_pred CeEeecccc
Q 006164 558 PVLVCCEAY 566 (658)
Q Consensus 558 PVyV~aety 566 (658)
|+++++...
T Consensus 75 ~ii~~s~~~ 83 (122)
T 1zgz_A 75 GIILVTGRS 83 (122)
T ss_dssp EEEEEESSC
T ss_pred CEEEEECCC
Confidence 998887543
No 230
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=34.39 E-value=1.7e+02 Score=30.01 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=53.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch------------------HHH
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------------AIS 517 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds------------------Av~ 517 (658)
.+++|.|.+.++..+++.+...| -+|++.+ |.+.|...+ +...|+.+..+... .+-
T Consensus 103 ~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (429)
T 1yiz_A 103 EVLVTVGAYEALYATIQGHVDEG--DEVIIIE--PFFDCYEPM--VKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELE 176 (429)
T ss_dssp SEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHHH--HHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHH
T ss_pred CEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEEeCCcccccccccccCcccCHHHHH
Confidence 67888887888876666654333 3566654 555554332 34578887776421 122
Q ss_pred HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 518 YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 518 ~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+. ++..|++- .---..|.++.+-=--.++-+|+.|++.+++
T Consensus 177 ~~l~~~~~~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 220 (429)
T 1yiz_A 177 ALFNEKTKMIIIN-TPHNPLGKVMDRAELEVVANLCKKWNVLCVS 220 (429)
T ss_dssp HHCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhccCceEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 2221 34445442 2212234444322233566688999987775
No 231
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=34.38 E-value=60 Score=30.12 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=56.4
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cchHHHHHhhhccEEEEcceeE
Q 006164 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI--~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+||..|-+.-+.. +++.+.++| .+|+++.-++. . ..+|...++.+... .|... ..+..+|.||--|-..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~----~-~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQ----K-AADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVP 73 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHH----H-HHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEeccc----c-cccccCCCceEEecccccccH-hhcccCCEEEECCccC
Confidence 4777787655533 334455555 46766643321 1 23444456654332 22223 5667788777655332
Q ss_pred -ecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 534 -LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 -laNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
...-.-.|-.||..+.-+|+..+..|+++.
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 111223488899999999999996666664
No 232
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=34.16 E-value=1e+02 Score=30.58 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=57.0
Q ss_pred CEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEcce
Q 006164 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAd 531 (658)
.+||..|-+.-+.. +++.+.++| .+|+++.-++... .+|.+.++.+.... | ..+..++..+|.||--|-
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQI-----QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCG-----GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhh-----hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 47888887655533 334455555 5677765444321 12333455443321 2 356667778888886654
Q ss_pred eEecC-CC-----eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 532 SVLSN-GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 532 aVlaN-G~-----VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..-.. .+ -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 87 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 87 YYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 22110 01 146779999999999888866665544
No 233
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=33.91 E-value=2.6e+02 Score=27.21 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=36.0
Q ss_pred HHHhCCCC---EEEEcchHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHHhCCCCeEeecc
Q 006164 500 RLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 500 eL~~~GI~---vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+.+.|++ +.+...+....+.. ++|.+++|+..- |.+-. -.|+-.-.+ .++-.+||+|+=+
T Consensus 207 ~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~---~~~~~~~~Gsv~~~v-l~~~~~pVLvv~~ 276 (290)
T 3mt0_A 207 FQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVAR---TGLSGALIGNTAEVV-LDTLESDVLVLKP 276 (290)
T ss_dssp HHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSS---CCGGGCCSCHHHHHH-HTTCSSEEEEECC
T ss_pred HHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCC---cCCcceecchHHHHH-HhcCCCCEEEECC
Confidence 34455773 34444444444433 499999999752 22222 256654444 5677899999854
No 234
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=33.80 E-value=1.7e+02 Score=29.96 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEcchH---HHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vTlI~DsA---v~~iM~-~Vd~VivG 529 (658)
+.|++-+-+.++..+|..+.+.| -+|++.+ |.+.+... ...+ ...|+.+.++...- +-..+. ++..|++.
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 157 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPG--DEVLLGN--TLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFE 157 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhcCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 45555544566655555553333 3566543 45555433 3333 56799999886322 222332 34455542
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+. ..|.+.. --.++-+|++|++.++|
T Consensus 158 --~~~nptG~~~~---l~~i~~l~~~~~~~li~ 185 (398)
T 1gc0_A 158 --SPANPNMHMAD---IAGVAKIARKHGATVVV 185 (398)
T ss_dssp --SSCTTTCCCCC---HHHHHHHHGGGTCEEEE
T ss_pred --CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 222 2354442 35677789999998776
No 235
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=33.57 E-value=27 Score=35.39 Aligned_cols=81 Identities=7% Similarity=-0.007 Sum_probs=54.2
Q ss_pred eEEEEeCCCCCchHHHH-HHHHHhCCCCEEEEcchHHH---HHhhhccEEEEcceeEecCCCeecccchHHHHHHHHh--
Q 006164 481 FRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAIS---YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-- 554 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~L-a~eL~~~GI~vTlI~DsAv~---~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-- 554 (658)
.+|.++++..+.+|... ...|.+.|++|+++....+. ..+.+.|.||++ | +.. +.+.-.++..+.+.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILS-D-YPA-----ERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHHH
Confidence 36777787766666654 57899999999999877663 567899999986 2 111 23444555555544
Q ss_pred CCCCeEeecccccc
Q 006164 555 FHIPVLVCCEAYKF 568 (658)
Q Consensus 555 ~~VPVyV~aetyKf 568 (658)
.|-=++++.....|
T Consensus 78 ~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 78 AGCGLVMLGGWESY 91 (259)
T ss_dssp TTCEEEEECSTTSS
T ss_pred hCCeEEEecCcccc
Confidence 47778888664444
No 236
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=33.55 E-value=1.1e+02 Score=30.99 Aligned_cols=101 Identities=16% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------hHHHHHhh--hccE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH--EVTR 525 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------sAv~~iM~--~Vd~ 525 (658)
..+++|.|.+.++..+++.+.+.| -+|++. .|.+.|.... +...|.++..+.. ..+-..+. ++..
T Consensus 92 ~~v~~~~g~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 165 (397)
T 2zyj_A 92 EEVLITTGSQQALDLVGKVFLDEG--SPVLLE--APSYMGAIQA--FRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRF 165 (397)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSC
T ss_pred hhEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHHH--HHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeE
Confidence 467777777777766665543333 345553 3556554433 3457877766642 22333333 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|++=..--...|.++..-=-..++-+|+.|++.+++
T Consensus 166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 433222112234443321122567788899998776
No 237
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=33.53 E-value=1.8e+02 Score=32.01 Aligned_cols=95 Identities=20% Similarity=0.349 Sum_probs=56.5
Q ss_pred HHHHHhccCCCEEEeeCCh-----HHHHHHH-HHH---HHcCCe--eEEEEeC-CCCCchHH----------------HH
Q 006164 446 KHAVTKIRDGDVLLTYGSS-----SAVEMIL-QHA---HELGKQ--FRVVIVD-SRPKHEGK----------------LL 497 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S-----saV~~vL-~~A---~e~gk~--f~ViV~E-SRP~~EG~----------------~L 497 (658)
+.|+++|++||+|.+.|+. .++...| +++ +..+.. +.++... ..|..++. ..
T Consensus 18 eEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~ 97 (514)
T 4eu9_A 18 ETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDAT 97 (514)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCCHH
Confidence 4567799999999998642 2332333 322 234444 4444333 33444432 12
Q ss_pred HHHHHhCC-CCEEEEcchHHHHHhh-----hccEEEEcceeEecCCCee
Q 006164 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVC 540 (658)
Q Consensus 498 a~eL~~~G-I~vTlI~DsAv~~iM~-----~Vd~VivGAdaVlaNG~Vv 540 (658)
.+++.+.| +...-+..+.++..+. .+|..|+-+..+-.+|.+.
T Consensus 98 ~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis 146 (514)
T 4eu9_A 98 MRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIV 146 (514)
T ss_dssp HHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEE
T ss_pred HHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEE
Confidence 35666676 3333334566664442 5899999999999999885
No 238
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=33.50 E-value=2.2e+02 Score=28.78 Aligned_cols=112 Identities=7% Similarity=0.008 Sum_probs=54.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcc-----
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA----- 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGA----- 530 (658)
.|..+|.+..-...+....+....++++ |++..+. ....++ .+.||++....|-.-..--.++|.|++..
T Consensus 4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~-~~~~~~---~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQE-AAQKVV---EQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHH-HHHHHH---HHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHH-HHHHHH---HHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 4566676654333333333233456655 4444322 112222 23465555554432222223477777643
Q ss_pred ------------eeEecCCCeecccchHHHHHHHHhCCCCeEeecccccccccc
Q 006164 531 ------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 531 ------------daVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++.-=-..+--....+.-+|+.+++.++.++-.+.|++.+
T Consensus 80 ~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~ 133 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGY 133 (344)
T ss_dssp HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHH
T ss_pred HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHH
Confidence 223322223344445556667888888885555666676544
No 239
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=33.46 E-value=3e+02 Score=27.65 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=52.0
Q ss_pred CEEEeeCChHHHHHHHHHHHH-------cCCeeEEEEeCCCCCchHHHH-HHHHHh----------CCCCEEEEcchHHH
Q 006164 456 DVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRLVR----------KGLSCTYTHINAIS 517 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e-------~gk~f~ViV~ESRP~~EG~~L-a~eL~~----------~GI~vTlI~DsAv~ 517 (658)
.+++|.|-+.+++.+|+.+.. .|+. +|++.+ |.+-|..+ +..+.. .+..+..+.-.-+.
T Consensus 98 ~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~-~vi~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T 4adb_A 98 RVFFCNSGAEANEAALKLARKFAHDRYGSHKS-GIVAFK--NAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN 174 (406)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEET--TCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEC--CCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence 677777777777776665543 3333 555543 22222211 122211 12345555322232
Q ss_pred HH---hh-hccEEEEcceeEecCCCee--cccchHHHHHHHHhCCCCeEe
Q 006164 518 YI---IH-EVTRVFLGASSVLSNGTVC--SRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 518 ~i---M~-~Vd~VivGAdaVlaNG~Vv--NKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+ +. ++..|++- -+...|+++ ..-=-..++-+|+.|++++++
T Consensus 175 ~l~~~l~~~~~~v~~~--p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~ 222 (406)
T 4adb_A 175 SASALIDDSTCAVIVE--PIQGEGGVVPASNAFLQGLRELCNRHNALLIF 222 (406)
T ss_dssp HHHTTCSTTEEEEEEC--SEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCeEEEEEe--CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 22 22 34444444 356666655 444445677789999998776
No 240
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=33.35 E-value=59 Score=30.94 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=36.0
Q ss_pred EEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006164 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 458 ILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D 513 (658)
|.+|..+ ..+...|..|+++|..++|++....-...+ .....|.+.||++.+...
T Consensus 64 i~~y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~-~~~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 64 LCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMALNG-SQIGLLRKAGIQVRHDQD 119 (196)
T ss_dssp EEESCBCCHHHHHHHHHHHHTTCEEEEEESSCCC---C-CHHHHHHHTTCEEEECCS
T ss_pred EEEEEeCCHHHHHHHHHHHHcCCcEEEEEecccccccH-HHHHHHHhcCCCcccccc
Confidence 4555543 445577888999999999988643332222 235679999999876543
No 241
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=33.27 E-value=2.2e+02 Score=28.46 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHH---HHHHH---hCCCCEEEEc--c-hHHHHHhhhc
Q 006164 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLL---LRRLV---RKGLSCTYTH--I-NAISYIIHEV 523 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~L---a~eL~---~~GI~vTlI~--D-sAv~~iM~~V 523 (658)
.+.+||..|-+.-+...| +.+.++| .+|+++.-++......+ ..++. ..++.+.... | ..+..++..+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 356888888876554333 4445555 57777765443211122 11111 2344332221 1 3456667778
Q ss_pred cEEEEcceeEecC---CC-----eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 524 TRVFLGASSVLSN---GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 524 d~VivGAdaVlaN---G~-----VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
|.||--|-..... .+ -+|-.||..++-+|+.+++.-+|.+.+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 8777655322100 01 147789999999999999886665544
No 242
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=33.04 E-value=1.5e+02 Score=30.80 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=51.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HH-HHHhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|++-+-+.++..++. ..+.| -+|++.+ |.+.|... .. .+...|+.++++... .+...+. ++..|++
T Consensus 84 ~~i~~~sG~~ai~~~~~-l~~~g--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~- 157 (403)
T 3cog_A 84 YCLAFASGLAATVTITH-LLKAG--DQIICMD--DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWI- 157 (403)
T ss_dssp EEEEESCHHHHHHHHHT-TSCTT--CEEEEES--SCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEeC--CCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 34444333456655555 43333 3566654 66666332 32 345689999998632 2323332 3344443
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCC-CCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~-VPVyV 561 (658)
..---..|.+.. --.++-+|+.|+ +.++|
T Consensus 158 ~~p~nptG~~~~---l~~i~~la~~~g~~~liv 187 (403)
T 3cog_A 158 ETPTNPTQKVID---IEGCAHIVHKHGDIILVV 187 (403)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEE
T ss_pred ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEE
Confidence 222223455553 356777899999 77665
No 243
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=32.96 E-value=3.1e+02 Score=25.72 Aligned_cols=36 Identities=6% Similarity=-0.143 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
+=.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 146 ~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 146 NVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp HHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 345667888889999999999876677777898876
No 244
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=32.67 E-value=3.3e+02 Score=28.34 Aligned_cols=98 Identities=13% Similarity=-0.086 Sum_probs=54.9
Q ss_pred EEEeeCChHHHHHHHHHHHH--------cC---CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HH
Q 006164 457 VLLTYGSSSAVEMILQHAHE--------LG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI 516 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e--------~g---k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av 516 (658)
.++|-|-+.++...|..+.. .| .+.+|++.+ .+ ..+.+.+...|+.+.++... ++
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~---~h--~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l 180 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQ--ICWHKFARYWDVELREIPMRPGQLFMDPKRM 180 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS---CC--HHHHHHHHHTTCEEEECCCBTTBCSCCHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC---Cc--HHHHHHHHHcCceEEEEecCCCCCeECHHHH
Confidence 67777777776555554432 34 234677755 22 22334445579988888532 22
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhC------CCCeEee
Q 006164 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF------HIPVLVC 562 (658)
Q Consensus 517 ~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~------~VPVyV~ 562 (658)
-..+.+-+++|+....-...|.+. . --.|+-+|+.| ++.|+|=
T Consensus 181 ~~~i~~~t~~v~~~~~~n~tG~~~-~--l~~I~~ia~~~~~~~~~~~~l~vD 229 (452)
T 2dgk_A 181 IEACDENTIGVVPTFGVTYTGNYE-F--PQPLHDALDKFQADTGIDIDMHID 229 (452)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBC-C--HHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHhhCCEEEEEEcCCcCCcccC-C--HHHHHHHHHHHhhccCCCCcEEEE
Confidence 223333345666555555556553 2 24566677774 8888873
No 245
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.58 E-value=1.2e+02 Score=25.74 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=49.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH-
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak- 553 (658)
....+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~~ 77 (147)
T 2zay_A 6 GKWWRIMLVDTQLPA-LAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKI-----SGMDLFNSLKKN 77 (147)
T ss_dssp --CEEEEEECTTGGG-GHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSS-----CHHHHHHHHHTS
T ss_pred CCCceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCC-----CHHHHHHHHHcC
Confidence 456789999888754 3445567777898888665432 222222 58999987643 221 24334444443
Q ss_pred --hCCCCeEeecccc
Q 006164 554 --GFHIPVLVCCEAY 566 (658)
Q Consensus 554 --~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 78 ~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 78 PQTASIPVIALSGRA 92 (147)
T ss_dssp TTTTTSCEEEEESSC
T ss_pred cccCCCCEEEEeCCC
Confidence 4579999998654
No 246
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=32.49 E-value=95 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=42.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--h
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 522 (658)
.||.-|+++.++.++. +.+.+. .++|.++= .+|...|.+.| .+.||++.++.. ..+...++ +
T Consensus 4 aVl~SG~Gs~L~aLi~-~~~~~~~~~~I~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (209)
T 1meo_A 4 AVLISGTGSNLQALID-STREPNSSAQIDIVISNKAAVAGLDKA---ERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79 (209)
T ss_dssp EEEESSSCTTHHHHHH-HHHSTTCSCEEEEEEESSTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCchHHHHHHH-HHhcCCCCcEEEEEEeCCCChHHHHHH---HHcCCCEEEECccccCchhhhhHHHHHHHHhcC
Confidence 4778889999977664 444443 45554333 34555675444 678999987642 23444444 5
Q ss_pred ccEEEEcc
Q 006164 523 VTRVFLGA 530 (658)
Q Consensus 523 Vd~VivGA 530 (658)
+|.+|+-+
T Consensus 80 ~Dliv~a~ 87 (209)
T 1meo_A 80 IDIVCLAG 87 (209)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcc
Confidence 77776544
No 247
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=32.48 E-value=1.2e+02 Score=30.11 Aligned_cols=70 Identities=23% Similarity=0.239 Sum_probs=39.5
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--hcc
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 524 (658)
||..|.++....+|....+....++|. |+-.+|...|.+.| .+.||++.++.. ..+...++ ++|
T Consensus 27 ~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 103 (229)
T 3auf_A 27 VLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERA---RRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVD 103 (229)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHH---HHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCS
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHH---HHcCCCEEEECcccccchhhccHHHHHHHHhcCCC
Confidence 444488888777776655432234443 22234655554444 568999987642 23334444 577
Q ss_pred EEEEcc
Q 006164 525 RVFLGA 530 (658)
Q Consensus 525 ~VivGA 530 (658)
.+|+-+
T Consensus 104 liv~ag 109 (229)
T 3auf_A 104 LVCLAG 109 (229)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 777643
No 248
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=32.34 E-value=98 Score=26.08 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=44.0
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh-C
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~ 555 (658)
..+|+|+|..+.. ...+...|.+.|+.|....+.. +..+-. ..|.||+.. +.+. -|.-.+..+-+. .
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~-----~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESRIT-FLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGE-----ESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTH-----HHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHH-HHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCC-----cHHHHHHHHHHHCC
Confidence 4577777766543 2334466777788877655432 222222 478888875 3221 233333334333 4
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|+++++...
T Consensus 75 ~~pii~ls~~~ 85 (142)
T 2qxy_A 75 DTKVAVLSAYV 85 (142)
T ss_dssp TCEEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 79999987654
No 249
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=32.21 E-value=1.1e+02 Score=31.20 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=52.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEcchHH-HHH--h---hhccEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAI-SYI--I---HEVTRV 526 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~-vTlI~DsAv-~~i--M---~~Vd~V 526 (658)
...+++|.|.+.++.. +..+...| -+|++. .|.+.|... .+...|+. +.++....- .+. + .++..|
T Consensus 95 ~~~v~~~~G~~~al~~-~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v 167 (400)
T 3asa_A 95 AKEIFISDGAKVDLFR-LLSFFGPN--QTVAIQ--DPSYPAYLD--IARLTGAKEIIALPCLQENAFFPEFPEDTHIDIL 167 (400)
T ss_dssp GGGEEEESCHHHHHHH-HHHHHCSS--CEEEEE--ESCCHHHHH--HHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEE
T ss_pred HHHEEEccChHHHHHH-HHHHcCCC--CEEEEC--CCCcHHHHH--HHHHcCCcceEecccchhcCcccChhhccCccEE
Confidence 3467888887777755 44444333 356654 366666443 34557888 777753211 111 1 234555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 168 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (400)
T 3asa_A 168 CLC-SPNNPTGTVLNKDQLRAIVHYAIEHEILILF 201 (400)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEe-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 552 2112224443322123466678999987664
No 250
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=32.09 E-value=1.5e+02 Score=30.88 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=51.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HH-HHhCCCCEEEEcchHHH---HHhh-hccEEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RR-LVRKGLSCTYTHINAIS---YIIH-EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~e-L~~~GI~vTlI~DsAv~---~iM~-~Vd~Viv 528 (658)
+.|++-+.+.++.. +....+.| -+|++. .|.+-|. .+. .. +...|+.++++...-+. ..+. ++.+|++
T Consensus 84 ~~~~~~sG~~Ai~~-~~~l~~~g--d~Vi~~--~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~ 158 (400)
T 3nmy_A 84 RAFAFASGMAATST-VMELLDAG--SHVVAM--DDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWI 158 (400)
T ss_dssp EEEEESSHHHHHHH-HHTTSCTT--CEEEEE--SSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEE
T ss_pred CEEEecCHHHHHHH-HHHHcCCC--CEEEEe--CCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEE
Confidence 34444444455644 33333333 356554 3555543 333 33 66779999998643333 3332 3444444
Q ss_pred cceeEe-cCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 529 GASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 529 GAdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.+. ..|.+.. --.++-+|++|+++++|=
T Consensus 159 --e~~~np~G~~~~---l~~i~~la~~~g~~livD 188 (400)
T 3nmy_A 159 --ETPTNPMLKLVD---IAAIAVIARKHGLLTVVD 188 (400)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHTTCEEEEE
T ss_pred --ECCCCCCCeeec---HHHHHHHHHHcCCEEEEE
Confidence 2333 2344443 456778899999988863
No 251
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=32.06 E-value=3.4e+02 Score=27.41 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=52.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCCEEEEcch---HHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vTlI~Ds---Av~~iM~-~Vd~VivG 529 (658)
+.|++-+.+.++..+++.+.+ ..-+|++.+ |.+.|..- ...+ ...|+++.++... .+-..+. ++..|++-
T Consensus 69 ~~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 144 (386)
T 1cs1_A 69 GAVLTNTGMSAIHLVTTVFLK--PGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHCC--TTCEEEEET--TCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhC--CCCEEEEec--CCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEe
Confidence 444443225566555554433 234566654 66655322 2333 5679988888532 3333333 45566553
Q ss_pred ceeEe-cCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVl-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+. ..|.+.. -..++-+|++|++.+++
T Consensus 145 --~~~nptG~~~~---l~~i~~l~~~~~~~li~ 172 (386)
T 1cs1_A 145 --SPSNPLLRVVD---IAKICHLAREVGAVSVV 172 (386)
T ss_dssp --CSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred --CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222 2254442 35677789999998776
No 252
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=32.05 E-value=3.8e+02 Score=26.45 Aligned_cols=98 Identities=17% Similarity=0.315 Sum_probs=54.7
Q ss_pred CEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEcch-------HHHHHhh----
Q 006164 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN-------AISYIIH---- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vTlI~Ds-------Av~~iM~---- 521 (658)
.+++|.|-+.++..+++.+ .+.| -+|++. .|.+.+.... .. ....|+.+..+... -+..+-.
T Consensus 78 ~v~~~~g~t~a~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 153 (390)
T 1elu_A 78 TITITDNVTTGCDIVLWGLDWHQG--DEILLT--DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP 153 (390)
T ss_dssp GEEEESSHHHHHHHHHHHSCCCTT--CEEEEE--TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT
T ss_pred HEEEeCChHHHHHHHHhCCCCCCC--CEEEEe--cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC
Confidence 6788878778886666555 3333 356654 5566665533 23 34468888887532 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHH----hCCCCeEe
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY----GFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak----~~~VPVyV 561 (658)
++..|++ ..---..|.++. --.++-+|+ .|++.+++
T Consensus 154 ~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~ 193 (390)
T 1elu_A 154 KTRLVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLV 193 (390)
T ss_dssp TEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEE
T ss_pred CceEEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEE
Confidence 3334433 222223455555 346777888 88887665
No 253
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=32.00 E-value=1.9e+02 Score=29.26 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHHhh----h
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~----~ 522 (658)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+... -+..+-. +
T Consensus 101 ~~~v~~~~g~t~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 101 PDQVVVTNGAKQALFNAFMALLDPG--DEVIVFS--PVWVSYIP--QIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred HHHEEEecCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 3467777777777766666553333 3566553 44444332 344578887777522 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..|++ ..---..|.++..-=-..++-+|+.|++.+++
T Consensus 175 ~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 212 (389)
T 1o4s_A 175 TKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIIS 212 (389)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 334443 21111234444332234566788899988776
No 254
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=31.87 E-value=1.2e+02 Score=31.04 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=54.0
Q ss_pred cCCCEEEeeCChHHHH--HHHHHHHH--cCC-------eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------h
Q 006164 453 RDGDVLLTYGSSSAVE--MILQHAHE--LGK-------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------N 514 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~--~vL~~A~e--~gk-------~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------s 514 (658)
....+++|-|.+.++. .++..... .|. .-+|++. .|.+.+...+ +...|..+..+.. .
T Consensus 86 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~ 161 (423)
T 3ez1_A 86 KAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVT--VPGYDRHFLL--LQTLGFELLTVDMQSDGPDVD 161 (423)
T ss_dssp CGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEE--ESCCHHHHHH--HHHHTCEEEEEEEETTEECHH
T ss_pred ChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEc--CCCcHHHHHH--HHHcCCEEEeccCCCCCCCHH
Confidence 3347888888887875 44444333 221 2456654 3666555433 4445777766531 2
Q ss_pred HHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHH-HhCCCCeEe
Q 006164 515 AISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHIPVLV 561 (658)
Q Consensus 515 Av~~iM~---~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~A-k~~~VPVyV 561 (658)
.+-..+. ++.+|++=..-=-..|.++..----.++-+| ++|++.+++
T Consensus 162 ~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 162 AVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEE
T ss_pred HHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEE
Confidence 3444442 3444432211112234444433333566667 888987665
No 255
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=31.87 E-value=3.6e+02 Score=29.84 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=68.6
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC--------------chH----HHHHHHHHhC-
Q 006164 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--------------HEG----KLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~--------------~EG----~~La~eL~~~- 504 (658)
++..+.+.+. +..||..|.+.+=..+++.+...|.. ++.++|.... .-| ..++..|.+.
T Consensus 22 ~G~~~q~~L~-~~~VlvvG~GGlGseiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN 99 (531)
T 1tt5_A 22 WGDHGQEALE-SAHVCLINATATGTEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN 99 (531)
T ss_dssp HHHHHHHHHH-HCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred cCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence 5666777776 47888899876655667777777765 5555554331 112 2234677765
Q ss_pred -CCCEEEEcchHHH------HHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 505 -GLSCTYTHINAIS------YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 505 -GI~vTlI~DsAv~------~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+++++.+...--. .++...|.||.+.|.+- --+.+.-.|+.++|||+.+
T Consensus 100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES---------TSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4777777643221 34567899988765432 3356667889999999876
No 256
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=31.85 E-value=5e+02 Score=27.76 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEc--ch-HHHHHhh--hccEEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTH--IN-AISYIIH--EVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTlI~--Ds-Av~~iM~--~Vd~Vi 527 (658)
.|..|+.++....+..+.+-+.+.|.....+++.+.....-.++.+.|.+.| ..+.++. |. .+...++ ++|.+|
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~pDl~i 390 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLI 390 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCCCEEE
Confidence 5888888888766656555556777766655666543333334444455555 5544443 33 2344454 466665
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
-|-. -.-+|+..+||++.+.
T Consensus 391 g~~~----------------~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 391 SNTY----------------GKFIAREENIPFVRFG 410 (458)
T ss_dssp ESGG----------------GHHHHHHHTCCEEECS
T ss_pred eCcc----------------hHHHHHHcCCCEEEee
Confidence 3321 2345788899999763
No 257
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=31.68 E-value=1.1e+02 Score=26.96 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=37.1
Q ss_pred EEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCC-chHHHHHHHHHhCCCCEEEE
Q 006164 458 LLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 458 ILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~-~EG~~La~eL~~~GI~vTlI 511 (658)
|.++-.+ ..+...|..|.++|.+++|++....-. .......+.|.+.|+++.+.
T Consensus 32 i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~ 87 (155)
T 1byr_A 32 MMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTD 87 (155)
T ss_dssp EEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEc
Confidence 4444333 345567888888999999888765432 23455668899999998775
No 258
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=31.42 E-value=1.2e+02 Score=29.16 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=48.2
Q ss_pred EEeeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc--c-hHHHHHhhhccEEEEcceeE
Q 006164 458 LLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 458 ILT~g~SsaV~~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vd~VivGAdaV 533 (658)
||..|-+.-+..-|. .+.++...++|+++.-++.. ...|...++.+.... | ..+..++..+|.||--|-..
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 76 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK-----AQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE 76 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----CHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC---
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh-----hhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 666676655543333 33333113566666544332 123344555443321 1 34556677777777544321
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+ .|-.||..+.-+|+.++++-+|...
T Consensus 77 -~~---~~~~~~~~l~~a~~~~~~~~~v~~S 103 (286)
T 2zcu_A 77 -VG---QRAPQHRNVINAAKAAGVKFIAYTS 103 (286)
T ss_dssp ---------CHHHHHHHHHHHHTCCEEEEEE
T ss_pred -ch---HHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 11 3456777777777777776555443
No 259
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=31.33 E-value=1e+02 Score=31.33 Aligned_cols=44 Identities=5% Similarity=-0.193 Sum_probs=21.5
Q ss_pred HHHHHhhhccEEEEcceeEecC----CCeecccchHHHHHHHHhCCCC
Q 006164 515 AISYIIHEVTRVFLGASSVLSN----GTVCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 515 Av~~iM~~Vd~VivGAdaVlaN----G~VvNKiGT~~lAl~Ak~~~VP 558 (658)
.+..++.++|.||--|-..... ---.|-.||..++-+|+.++++
T Consensus 39 ~l~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 86 (369)
T 3st7_A 39 ELESALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKK 86 (369)
T ss_dssp HHHHHHHHCSEEEECCCSBCTTCSTTCSSSCCBHHHHHHHHHTTCSSC
T ss_pred HHHHHhccCCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344455566665443211110 0123556666666666666655
No 260
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=31.29 E-value=89 Score=33.46 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=53.4
Q ss_pred eeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH--------HHHHhCCCCEEEEcc-------hHHHHHhh--
Q 006164 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL--------RRLVRKGLSCTYTHI-------NAISYIIH-- 521 (658)
Q Consensus 460 T~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La--------~eL~~~GI~vTlI~D-------sAv~~iM~-- 521 (658)
|.+-+.++..+|....+.| -+|++.+ .|.+.|. .+. ..|...|+.+..+.. ..+-..+.
T Consensus 98 ~~sGt~A~~~al~all~pG--D~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~ 174 (427)
T 3hvy_A 98 FVNGTHAIGAALFGNLRPN--DTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD 174 (427)
T ss_dssp CCSHHHHHHHHHHHTCCTT--CEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhcCCC--CEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC
Confidence 4454555555554443333 3566655 3444443 343 345567998887643 34444454
Q ss_pred -hccEEEEcceeEecCCCeecccch----HHHHHHHHh--CCCCeEee
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGT----ACVAMVAYG--FHIPVLVC 562 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT----~~lAl~Ak~--~~VPVyV~ 562 (658)
+..+|++.... |...|..|+ ..++-+|+. |++.++|=
T Consensus 175 ~~tklV~i~~s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 175 DSIKLIHIQRST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp TTEEEEEEESSC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CCCEEEEEECCC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45566555422 335555555 456667888 89888863
No 261
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=31.10 E-value=1.5e+02 Score=31.29 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-------hHHHHHhh-----
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 521 (658)
..++++|.|.+.++..+++.+.+.| -+|++. .|.+-|...+ +...|+.+..+.. .++-..+.
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~G--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPG--DIVVVE--APTYLAALQA--FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ 213 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCC--CEEEEe--CCChHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc
Confidence 3467788887778866666554334 355553 3666665433 3446887766642 23334443
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++.+|++=..---..|.++..-=--.|+-+|+.|++.+++
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333322111111123333221123577788999987775
No 262
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=31.01 E-value=2.2e+02 Score=23.56 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=44.3
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh-CC
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FH 556 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~~ 556 (658)
.+|+|+|..+.. ...+...|...|+.+....+.. +..+-. ..|.||+..+ +.+. -|.-.+..+.+. ..
T Consensus 4 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~ 75 (136)
T 1mvo_A 4 KKILVVDDEESI-VTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKL-----DGIEVCKQLRQQKLM 75 (136)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHTTCC
T ss_pred CEEEEEECCHHH-HHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCC-----CHHHHHHHHHcCCCC
Confidence 467777776643 2334466777888877655432 222222 5789988654 2222 243344444443 57
Q ss_pred CCeEeecccc
Q 006164 557 IPVLVCCEAY 566 (658)
Q Consensus 557 VPVyV~aety 566 (658)
+|+++++...
T Consensus 76 ~~ii~~s~~~ 85 (136)
T 1mvo_A 76 FPILMLTAKD 85 (136)
T ss_dssp CCEEEEECTT
T ss_pred CCEEEEECCC
Confidence 8999887543
No 263
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=30.91 E-value=1.4e+02 Score=25.60 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=47.1
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~- 554 (658)
+..+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+- .+ .-|-..+..+.+.
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI-LNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKSY 77 (154)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHhC
Confidence 45678888877643 3344567777888877665432 222222 47888887542 22 1243344444443
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 78 ~~~~ii~ls~~~ 89 (154)
T 2rjn_A 78 PDIERVVISGYA 89 (154)
T ss_dssp TTSEEEEEECGG
T ss_pred CCCcEEEEecCC
Confidence 479999987644
No 264
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=30.86 E-value=1.9e+02 Score=29.42 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=55.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh-----
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 521 (658)
.+++|.|-+.++..++....+.| -+|++.+ |.+.+... .+...|..+..+.. ..+-..+.
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPG--DEVLTAD--WYWGAYRV--ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTT--CEEEEES--SCCTHHHH--HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEECCchHHHHHHHHHHhcCCC--CEEEECC--CCchhHHH--HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc
Confidence 56777777777766655544333 3566654 66655443 34557888777752 12223333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHH------hCCCCeEe
Q 006164 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAda-VlaNG~VvNKiGT~~lAl~Ak------~~~VPVyV 561 (658)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 224 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGI 224 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 23323332211 234577776666666777777 77776654
No 265
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=30.80 E-value=1.3e+02 Score=25.92 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=46.8
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHHh-C
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~ 555 (658)
..+|.|+|..+.. ...+...|...|+.|....+..-+.- +. ..|.||+..+- .+ .-|.-.+..+-+. .
T Consensus 3 ~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDL-RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhCC
Confidence 4678888877654 33455777788998876654332222 22 47888887542 22 2244444444443 4
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|+++++...
T Consensus 75 ~~pii~ls~~~ 85 (155)
T 1qkk_A 75 DLPMILVTGHG 85 (155)
T ss_dssp TSCEEEEECGG
T ss_pred CCCEEEEECCC
Confidence 89999987644
No 266
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=30.74 E-value=4.9e+02 Score=27.25 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=68.4
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC------CCch--------H----HHHHHHHHhC--CCC
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR------PKHE--------G----KLLLRRLVRK--GLS 507 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR------P~~E--------G----~~La~eL~~~--GI~ 507 (658)
+.+.|+ +..||.+|.+.+=..+++.+...|.. ++.++|.. ...| | ..++..|.+. ++.
T Consensus 28 g~~kL~-~~~VlIvGaGGlGs~va~~La~aGVg-~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~ 105 (340)
T 3rui_A 28 NLDIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMD 105 (340)
T ss_dssp CHHHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCE
T ss_pred hHHHHh-CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCE
Confidence 334443 57899999887655566666666765 33433321 1111 2 2344666664 566
Q ss_pred EEEEcc-------------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccc
Q 006164 508 CTYTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 508 vTlI~D-------------------sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
++.+.. ..+..++..+|.||...|... --+.+.-+|..+++|++-++ +.|
T Consensus 106 v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~---------tR~lin~~c~~~~~plI~aa--~G~ 174 (340)
T 3rui_A 106 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINAA--LGF 174 (340)
T ss_dssp EEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG---------GGHHHHHHHHHTTCEEEEEE--ECS
T ss_pred EEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH---------HHHHHHHHHHHcCCcEEEee--ecc
Confidence 666542 124566788999998887543 24788899999999999764 444
Q ss_pred c
Q 006164 569 H 569 (658)
Q Consensus 569 ~ 569 (658)
.
T Consensus 175 ~ 175 (340)
T 3rui_A 175 D 175 (340)
T ss_dssp S
T ss_pred e
Confidence 3
No 267
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=30.60 E-value=2.2e+02 Score=28.87 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-ch---------HHHHHhh-h
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN---------AISYIIH-E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-Ds---------Av~~iM~-~ 522 (658)
...+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|... .+...|+.+..+. +. .+-..+. +
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~g--d~vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 177 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAG--DYALVPQ--PGFPHYET--VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK 177 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred cceEEEeCChHHHHHHHHHHhCCCC--CEEEEcC--CCcHhHHH--HHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence 3467888887778866665553333 3566543 44545432 3455788777664 21 2222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+|++ ++---..|.++.+-=-..++-+|+.|++.+++
T Consensus 178 ~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 215 (416)
T 1bw0_A 178 TKLLIV-TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215 (416)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 223322 22111224333321134466678999998776
No 268
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=30.58 E-value=1.9e+02 Score=23.87 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=43.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHHh---
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--- 554 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~--- 554 (658)
.+|.|+|..|.. ...+...|...|..|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+.
T Consensus 3 ~~ILivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~-----~g~~~~~~l~~~~~~ 74 (122)
T 3gl9_A 3 KKVLLVDDSAVL-RKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVM-----DGFTVLKKLQEKEEW 74 (122)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSS-----CHHHHHHHHHTSTTT
T ss_pred ceEEEEeCCHHH-HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCC-----cHHHHHHHHHhcccc
Confidence 367788877654 2344567777888887665543222 222 4788887543 3332 243333333322
Q ss_pred CCCCeEeeccc
Q 006164 555 FHIPVLVCCEA 565 (658)
Q Consensus 555 ~~VPVyV~aet 565 (658)
.++|+++++..
T Consensus 75 ~~~pii~~s~~ 85 (122)
T 3gl9_A 75 KRIPVIVLTAK 85 (122)
T ss_dssp TTSCEEEEESC
T ss_pred cCCCEEEEecC
Confidence 47999998763
No 269
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.53 E-value=2e+02 Score=23.64 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC-CCCchHHHHHHHHHhC----CCCEEEEcch
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRK----GLSCTYTHIN 514 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES-RP~~EG~~La~eL~~~----GI~vTlI~Ds 514 (658)
.|..|.+....... +..+.+ ..+.++++|. -|...|..+++.|.+. ++++.+++..
T Consensus 26 ~~~~v~~~~~~~~a---~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 26 GEFDCTTAADGASG---LQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp TTSEEEEESSHHHH---HHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCcEEEEECCHHHH---HHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 45556666554433 222222 3577888875 4788899999999885 5777777653
No 270
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=30.29 E-value=2.3e+02 Score=30.62 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-chHHHHHhh-hc-
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIH-EV- 523 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-DsAv~~iM~-~V- 523 (658)
+-+.|..||.|...+.+..+..++...... ...-+|+++-.. +=|..+++.|. .++.+++|- |..-+..+. +-
T Consensus 202 g~t~i~~gD~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG--~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~ 278 (461)
T 4g65_A 202 GTTIIEADDEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGG--NIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELE 278 (461)
T ss_dssp TTCBCCTTCEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCS--HHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCT
T ss_pred CCceecCCCEEEEEeccchHHHHHHhhccccccccEEEEEcch--HHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCC
Confidence 444566788888888888887776655332 223467776542 35788888885 568888884 433333332 11
Q ss_pred -cEEEEccee----------EecCCCeecccc----hHHHHHHHHhCCCCeEee
Q 006164 524 -TRVFLGASS----------VLSNGTVCSRVG----TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 -d~VivGAda----------VlaNG~VvNKiG----T~~lAl~Ak~~~VPVyV~ 562 (658)
..|+-| |+ |-.--.++.-.| -..++++||++|++-.++
T Consensus 279 ~~~Vi~G-D~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa 331 (461)
T 4g65_A 279 NTIVFCG-DAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV 331 (461)
T ss_dssp TSEEEES-CTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CceEEec-cccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence 223222 11 111111222222 367889999999986665
No 271
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=29.93 E-value=1.1e+02 Score=32.72 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=53.7
Q ss_pred eeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--------HHHHhCCCCEEEEcc--------hHHHHHhh--
Q 006164 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--------RRLVRKGLSCTYTHI--------NAISYIIH-- 521 (658)
Q Consensus 460 T~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--------~eL~~~GI~vTlI~D--------sAv~~iM~-- 521 (658)
|.+-+.++..+|....+.| -+|++.+..++..-.++. ..|...|+.++.+.. ..+-..+.
T Consensus 97 ~~sGt~Ai~~al~all~pG--D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~ 174 (427)
T 3i16_A 97 FVNGTHALGAALFGNLRPG--NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED 174 (427)
T ss_dssp CCSHHHHHHHHHHHHCCTT--CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC
Confidence 4444455655554443333 356665533333333344 456677998888753 24444443
Q ss_pred -hccEEEEcceeEecCCCeecccchH----HHHHHHHh--CCCCeEee
Q 006164 522 -EVTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLVC 562 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~VvNKiGT~----~lAl~Ak~--~~VPVyV~ 562 (658)
+..+|++... -|...|..|+. .++-+|+. |++.|+|=
T Consensus 175 ~~tklV~i~~s----~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 175 ESITLVHIQRS----TGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp TTEEEEEEECS----CCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCEEEEEEcC----CCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3445554331 24456666763 46677888 99988864
No 272
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=29.85 E-value=1.7e+02 Score=31.34 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=61.2
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCC-eeEEEEeCCCCCch-HHH-H-----------H---HHHHhCCCCEEEEcc--
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHELGK-QFRVVIVDSRPKHE-GKL-L-----------L---RRLVRKGLSCTYTHI-- 513 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk-~f~ViV~ESRP~~E-G~~-L-----------a---~eL~~~GI~vTlI~D-- 513 (658)
.+.+||..|-+.-+... ++.+.+.+. ..+|+++.-++..+ ... + . ..+...++.+.....
T Consensus 72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~ 151 (478)
T 4dqv_A 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE 151 (478)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence 46788988876555333 334444422 36788876554322 111 1 1 111223443333222
Q ss_pred -------hHHHHHhhhccEEEEcceeEecC----CCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 514 -------NAISYIIHEVTRVFLGASSVLSN----GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 514 -------sAv~~iM~~Vd~VivGAdaVlaN----G~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..+..++.++|.||--|-.+-.+ ---.|-.||..++-+|+.+++.-+|..-+
T Consensus 152 ~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 152 PDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp GGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred cccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 24666777888887655332110 01147789999999999999854554444
No 273
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.67 E-value=23 Score=31.19 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=35.7
Q ss_pred HHhCCCCEEEE--cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 501 LVRKGLSCTYT--HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 501 L~~~GI~vTlI--~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..+.||++... ..+.+...+.+.|.|++|-.--+.-. .+--.|..++|||.|+-
T Consensus 30 a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 30 ANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEECC
T ss_pred HHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEeC
Confidence 34457777774 34445556678999999986554321 24455677899999974
No 274
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=29.39 E-value=3.6e+02 Score=25.33 Aligned_cols=36 Identities=0% Similarity=-0.266 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhCCCCEEEEcchHHHHHhhhc---cEEEE
Q 006164 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEV---TRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vTlI~DsAv~~iM~~V---d~Viv 528 (658)
+=.++++.+.+.|+++..|+++.-+.+-+.+ |.+|.
T Consensus 129 ~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~ 167 (201)
T 3trj_A 129 NILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR 167 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence 4455667888888888888877666666667 77764
No 275
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=29.27 E-value=2.3e+02 Score=28.53 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=29.1
Q ss_pred CCCEEE--eeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 454 DGDVLL--TYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 454 dgdvIL--T~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
...+++ |.|-+.++..++..+.. .+..-+|++.+ |.+.+..- .+...|..+..+.
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~--p~~~~~~~--~~~~~g~~~~~~~ 151 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPK--PSWGNHTP--IFRDAGLQLQAYR 151 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEE--SCCTTHHH--HHHHTTCEEEEEE
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcC--CCchhHHH--HHHHcCCeeEeee
Confidence 445655 77777777544443321 12223555543 65555433 3345688777765
No 276
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=29.09 E-value=3.7e+02 Score=27.38 Aligned_cols=90 Identities=12% Similarity=0.201 Sum_probs=51.2
Q ss_pred HHHHHHHhccC--CCEEEeeCC---hHHHHHHHHHHH-Hc------------------CCeeEEEEeCC-CCCchHHHHH
Q 006164 444 IVKHAVTKIRD--GDVLLTYGS---SSAVEMILQHAH-EL------------------GKQFRVVIVDS-RPKHEGKLLL 498 (658)
Q Consensus 444 Ia~~a~~~I~d--gdvILT~g~---SsaV~~vL~~A~-e~------------------gk~f~ViV~ES-RP~~EG~~La 498 (658)
|.+.+.+.+.. +.+++.++- |+++..++..+. +. +..+.|+.+++ ...-|-.+++
T Consensus 41 il~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv 120 (306)
T 2wsi_A 41 LLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFV 120 (306)
T ss_dssp HHHTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHH
Confidence 33444444432 467777754 456666665552 11 35577666665 4455667777
Q ss_pred HHHHh-CCCCEEEEcc---------hHHHHHhh---hccEEEEcceeE
Q 006164 499 RRLVR-KGLSCTYTHI---------NAISYIIH---EVTRVFLGASSV 533 (658)
Q Consensus 499 ~eL~~-~GI~vTlI~D---------sAv~~iM~---~Vd~VivGAdaV 533 (658)
.++.+ .|+++..+.- .++-.+++ ..+++|+|..+=
T Consensus 121 ~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrd 168 (306)
T 2wsi_A 121 LETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHT 168 (306)
T ss_dssp HHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCC
T ss_pred HHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecc
Confidence 66654 6888876631 23333333 467888886543
No 277
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=28.91 E-value=95 Score=28.48 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=56.9
Q ss_pred EEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE--cchHHHHHhhhccEEEEcceeE
Q 006164 457 VLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI--~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+||..|-+.-+. .+++.+.++| ++|+++.-++.. ..+|. .++.+... .|... ..+..+|.||--|-..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~-----~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGK-----ITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHH-----HHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchh-----hhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence 477788665443 3344455555 577777555421 12232 55554333 22223 6677888888765432
Q ss_pred ecCCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
. ...-.|-.||..+.-+|+..+++-+|..-
T Consensus 73 ~-~~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 73 P-DEAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp T-TTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred c-cccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 2 22345778899999999998766555543
No 278
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=28.89 E-value=2e+02 Score=29.41 Aligned_cols=100 Identities=5% Similarity=-0.125 Sum_probs=58.0
Q ss_pred CEEEeeC-ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCE--EEEcc-hHHHHHhhhccEEEEcce
Q 006164 456 DVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC--TYTHI-NAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g-~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~v--TlI~D-sAv~~iM~~Vd~VivGAd 531 (658)
..|+..| .+.+=..++..+.++|.-.+|+++|-.+. +| .+.+|.+...+. +.+.+ ......++.+|.||+-|-
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~--~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PG--VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HH--HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-Hh--HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 4688888 44322222233344565467877776554 34 345676655443 32222 345566889999999886
Q ss_pred eEecCCC------eecccchHHHHHHHHhCCCC
Q 006164 532 SVLSNGT------VCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 532 aVlaNG~------VvNKiGT~~lAl~Ak~~~VP 558 (658)
.-...|. -.|--++..++-.++.++..
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~ 118 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPR 118 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5444443 24556788888777776533
No 279
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=28.89 E-value=1.2e+02 Score=30.30 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHHHhccCCCEEEeeC-ChHHHHHHHHHHHHcC--C-eeEEEEeC-CCC---CchHHHHHHHHHhC-CCCEEEEcch-
Q 006164 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELG--K-QFRVVIVD-SRP---KHEGKLLLRRLVRK-GLSCTYTHIN- 514 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g-~SsaV~~vL~~A~e~g--k-~f~ViV~E-SRP---~~EG~~La~eL~~~-GI~vTlI~Ds- 514 (658)
+++..+.|+++++ |-.+ +++++..+..+..+.. + ..+++-++ +-+ ...-..|.+.|.+. |+++.++.-.
T Consensus 48 A~~l~~~l~~~~v-iGla~~G~T~~~~~~~l~~~~~~~~~v~~v~L~ggl~~~~~~~~~~~~~~la~~~~~~~~~l~~P~ 126 (264)
T 2r5f_A 48 AHYLETSLSAQDH-IGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQS 126 (264)
T ss_dssp HHHHHHHCCTTCE-EEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHHTSCEECCCCC-
T ss_pred HHHHHHhCCCCCE-EEECcchHHHHHHHHhhccccCCCCCcEEEECCCCCCCccccCHHHHHHHHHHHhCCeeEEeeCCc
Confidence 3455556777665 5667 9999888777654322 3 45555443 322 22334566777765 7776543221
Q ss_pred ---------------HHHHHh---hhccEEEEcceeEecCCCeecccch
Q 006164 515 ---------------AISYII---HEVTRVFLGASSVLSNGTVCSRVGT 545 (658)
Q Consensus 515 ---------------Av~~iM---~~Vd~VivGAdaVlaNG~VvNKiGT 545 (658)
.+..++ .++|..|+|-=..-.||.++| -|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Di~l~GIG~~~~~~~i~~-~g~ 174 (264)
T 2r5f_A 127 IEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRN-SGN 174 (264)
T ss_dssp ---------CCHHHHHHHHHHHHTTTCCEEEECCEECC-----------
T ss_pred ccCCHHHHHHHHcChHHHHHHHHHhcCCEEEEecCCCCCCccHhh-cCC
Confidence 122223 269999999887777899977 575
No 280
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=28.69 E-value=1.2e+02 Score=29.76 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=20.1
Q ss_pred cccchHHHHHHHHhCCCCeEeecccc
Q 006164 541 SRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 83 n~~~~~~l~~~~~~~~~~~~v~~SS~ 108 (321)
T 1e6u_A 83 NMMIESNIIHAAHQNDVNKLLFLGSS 108 (321)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEccH
Confidence 66899999999999998666655443
No 281
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=28.66 E-value=3.3e+02 Score=24.60 Aligned_cols=38 Identities=5% Similarity=-0.056 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEE
Q 006164 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 491 ~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~Viv 528 (658)
..+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 123 t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~ 160 (188)
T 1tk9_A 123 SPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLV 160 (188)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEE
Confidence 33445667888899999999999887777778998874
No 282
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.58 E-value=1.5e+02 Score=28.81 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=40.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeC-CCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~E-SRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~--~V 523 (658)
.||..|.++....+|....+....+.|.++= .+|...+.+ ...+.||++.++... .+...+. ++
T Consensus 7 ~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~---~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 7 AVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIE---RAARENVPAFVFSPKDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp EEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHH---HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHH---HHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCC
Confidence 4677788888777776655432244543332 335544444 345789999876421 3333343 56
Q ss_pred cEEEEcc
Q 006164 524 TRVFLGA 530 (658)
Q Consensus 524 d~VivGA 530 (658)
|.+|+-+
T Consensus 84 Dliv~a~ 90 (212)
T 3av3_A 84 DWIALAG 90 (212)
T ss_dssp CEEEESS
T ss_pred CEEEEch
Confidence 7776654
No 283
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.56 E-value=1.6e+02 Score=23.17 Aligned_cols=77 Identities=5% Similarity=0.117 Sum_probs=45.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh---C
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~---~ 555 (658)
+|+++|..+.. ...+...|...|+.|....+.. ...+-. ..|.||+..+. .+ .-|...+..+.+. .
T Consensus 3 ~iliv~~~~~~-~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 3 HILLLEEEDEA-ATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQADP 74 (119)
T ss_dssp EEEEECCCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCCS
T ss_pred EEEEEeCCHHH-HHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhccccC
Confidence 57777766543 2344567777888877665432 222222 47888876542 21 2244444455444 5
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|+++++...
T Consensus 75 ~~~ii~~~~~~ 85 (119)
T 2j48_A 75 HPPLVLFLGEP 85 (119)
T ss_dssp SCCCEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999987654
No 284
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=28.48 E-value=82 Score=33.72 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=42.1
Q ss_pred EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 510 YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 510 lI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..+-.++.++|..=+ .-|.++.=|.|..-+|+-.---+|.+|++|++|..
T Consensus 178 ~l~pPa~~all~~~~----~idgfi~PGHVstIiG~~~y~~l~~~y~~P~VVaG 227 (372)
T 2z1d_A 178 RLTPPAVEVLLKQGT----VFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAG 227 (372)
T ss_dssp ECHHHHHHHHHHTSC----CCSEEEEEHHHHHHHTTHHHHHHHHHHCCCEEEEC
T ss_pred cccHHHHHHHHcCCC----cCcEEEecCeeeEEeccchhHHHHHHcCCCEEEcC
Confidence 345668888887555 66888888999999999999999999999999874
No 285
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=28.33 E-value=3e+02 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=31.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
.+++|.|.+.++..++....+.| -+|++. .|.+.|... .+...|..+..+.
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~--~~~~~g~~~~~v~ 160 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPG--DNVLLD--EPAYSGTLQ--SLHPLGCNIINVA 160 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHH--HHGGGTCEEEEEC
T ss_pred cEEEeCcHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEEeC
Confidence 57788887778866665554334 355554 466666443 3455688777764
No 286
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=28.22 E-value=1.1e+02 Score=26.22 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=42.3
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH--
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-- 553 (658)
+.++|+|+|..+.. ...+...|.+.|..|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~~ 84 (143)
T 3m6m_D 13 RSMRMLVADDHEAN-RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVMQ 84 (143)
T ss_dssp --CEEEEECSSHHH-HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhch
Confidence 45688888877654 233446677778877766554222 1222 5788888543 3332 24333333321
Q ss_pred ---hCCCCeEeecccc
Q 006164 554 ---GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ---~~~VPVyV~aety 566 (658)
...+|+++++...
T Consensus 85 ~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 85 ASGMRYTPVVVLSADV 100 (143)
T ss_dssp HTTCCCCCEEEEESCC
T ss_pred hccCCCCeEEEEeCCC
Confidence 1358999987643
No 287
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.06 E-value=1.5e+02 Score=25.70 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEcch--HHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHIN--AISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-lI~Ds--Av~~iM~---~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~ 551 (658)
+..++|+|+|..+.. ...|...|.+.|+.+. ...+. ++..+-. ..|.||+..+- .+ .-|--.+..+
T Consensus 34 ~~~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~-----~~g~~~~~~l 105 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFT-VKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PK-----MDGITCLSNI 105 (157)
T ss_dssp TEECEEEEECSCHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SS-----SCHHHHHHHH
T ss_pred CCceEEEEEeCCHHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CC-----ccHHHHHHHH
Confidence 456789999887753 3344577788898886 44333 2222222 56888887642 22 2233333333
Q ss_pred HH-hCCCCeEeecccc
Q 006164 552 AY-GFHIPVLVCCEAY 566 (658)
Q Consensus 552 Ak-~~~VPVyV~aety 566 (658)
-+ ..++|+++++...
T Consensus 106 r~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 106 MEFDKNARVIMISALG 121 (157)
T ss_dssp HHHCTTCCEEEEESCC
T ss_pred HhhCCCCcEEEEeccC
Confidence 33 3579999987643
No 288
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=27.74 E-value=2.9e+02 Score=27.58 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=51.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhh-------ccEE
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-------VTRV 526 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-------Vd~V 526 (658)
.|++-+-+.++..+|....+ +.-.|++. .|.+.+. ...+...|.++..+.. ..+-..+.+ +.+|
T Consensus 106 ~i~~~sGt~a~~~~l~~~~~--~gd~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 179 (399)
T 3tqx_A 106 TILYSSCFDANGGLFETLLG--PEDAIISD--ELNHASI--IDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLI 179 (399)
T ss_dssp EEEESCHHHHHHTTHHHHCC--TTCEEEEE--TTCCHHH--HHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEE
T ss_pred EEEECchHHHHHHHHHHhcC--CCCEEEEC--CcccHHH--HHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceEE
Confidence 44444435566555544432 33345543 4555443 2345567888777742 344444543 4444
Q ss_pred EEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 ivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++.. ---..|.+.. --.++-+|+.|++.+++
T Consensus 180 ~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 210 (399)
T 3tqx_A 180 ATDG-VFSMDGIIAD---LKSICDLADKYNALVMV 210 (399)
T ss_dssp EEES-EETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEeC-CCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 4433 2234455544 45677889999987776
No 289
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.74 E-value=1.6e+02 Score=24.54 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=44.3
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hh---hhccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-II---HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM---~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
....+|+++|..+.. ...+...|...|+.|....+..-+. .+ ...|.||+..+- .+. -|.-.+..+..
T Consensus 13 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~~-----~g~~~~~~l~~ 84 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSH-ATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQL--VDL-----SIFSLLDIVKE 84 (138)
T ss_dssp -CCCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTC--TTS-----CHHHHHHHHTT
T ss_pred CCCCeEEEECCCHHH-HHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCC--CCC-----CHHHHHHHHHh
Confidence 345678888877643 3344566777888877665543222 22 247888886532 221 23333333333
Q ss_pred h-CCCCeEeec
Q 006164 554 G-FHIPVLVCC 563 (658)
Q Consensus 554 ~-~~VPVyV~a 563 (658)
. .++|+++++
T Consensus 85 ~~~~~~ii~ls 95 (138)
T 2b4a_A 85 QTKQPSVLILT 95 (138)
T ss_dssp SSSCCEEEEEE
T ss_pred hCCCCCEEEEE
Confidence 2 379999987
No 290
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=27.70 E-value=87 Score=31.52 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=48.2
Q ss_pred CEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---------HHHHHhhhccE
Q 006164 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIHEVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~~Vd~ 525 (658)
.+|+|-+-+.++..+|..+ ...| -+|++. .|.+.+... -+...|+.+.++... .+-..+.+=.+
T Consensus 53 ~~i~~~sgt~al~~~l~~l~~~~g--d~Vi~~--~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 126 (373)
T 3frk_A 53 YCIGCGNGLDALHLILKGYDIGFG--DEVIVP--SNTFIATAL--AVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTK 126 (373)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--TTSCTHHHH--HHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEE
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCc--CEEEEC--CCCcHHHHH--HHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCe
Confidence 5667666666676655544 3223 356554 344444332 345568887777432 11112222123
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+|+ ..-..|.+.. --.++-+|+.|++.|++
T Consensus 127 ~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~ 156 (373)
T 3frk_A 127 AII---AVHLYGQPAD---MDEIKRIAKKYNLKLIE 156 (373)
T ss_dssp EEE---EECCTTCCCC---HHHHHHHHHHHTCEEEE
T ss_pred EEE---EECCCcCccc---HHHHHHHHHHcCCEEEE
Confidence 333 1112343221 24677789999998886
No 291
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=27.69 E-value=4.8e+02 Score=26.23 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=51.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC--CEEEEc-----------------chHHH
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTH-----------------INAIS 517 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI--~vTlI~-----------------DsAv~ 517 (658)
+++|-|-+.+++.++ .+...| -+|++.+ +.+-|..+...+...|+ .+.++. ...+-
T Consensus 54 v~~~~sgt~a~~~~~-~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~ 128 (379)
T 3ke3_A 54 VIIPGSGTYGMEAVA-RQLTID--EDCLIIR--NGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAV 128 (379)
T ss_dssp EEEESCHHHHHHHHH-HHHCTT--CEEEEEE--CSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHH
T ss_pred EEEcCChhHHHHHHH-HhCCCC--CeEEEEe--CCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHH
Confidence 444445555666655 344333 3677765 34446555555555665 444442 12344
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccc-hHHHHHHHHhCCCCeEee
Q 006164 518 YIIH--EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 518 ~iM~--~Vd~VivGAdaVlaNG~VvNKiG-T~~lAl~Ak~~~VPVyV~ 562 (658)
..+. +...|++- +.=...| ++...+ --.++-+|+.|++.++|=
T Consensus 129 ~~i~~~~~~~v~~~-~~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 129 AKIKEDKSAIVYAP-HVETSSG-IILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp HHHHHHTCSEEEEE-SEETTTT-EECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCcEEEEE-eecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4443 45555441 1111224 444433 335777899999988864
No 292
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=27.68 E-value=74 Score=32.96 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=52.8
Q ss_pred HHHHHHHHH----hccC-CCEEEeeCChHHHHHHHHHHHHc---CCeeEEEEeCC----CCCchHHHHHHHHHhC-CCCE
Q 006164 442 RVIVKHAVT----KIRD-GDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS----RPKHEGKLLLRRLVRK-GLSC 508 (658)
Q Consensus 442 ~~Ia~~a~~----~I~d-gdvILT~g~SsaV~~vL~~A~e~---gk~f~ViV~ES----RP~~EG~~La~eL~~~-GI~v 508 (658)
+.|++.|++ +|.+ |++ +-.++++++..+..+..+. .+.++|+-++. .|......+++.|.+. |+++
T Consensus 125 ~~ia~~AA~~l~~~i~~~~~~-igl~~GsT~~~~~~~L~~~~~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~~~~~ 203 (345)
T 2o0m_A 125 SDFGDVLTNTLNLLLPNGENT-IAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNY 203 (345)
T ss_dssp HHHHHHHHHHHHHHCCSEEEE-EEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhcCcCCCE-EEECCcHHHHHHHHHhhhccCCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHhCCce
Confidence 345665655 4888 655 4568888886766655332 13455554432 2333455677888776 8877
Q ss_pred EEE--cch---HH-HHHh------------hhccEEEEcceeE
Q 006164 509 TYT--HIN---AI-SYII------------HEVTRVFLGASSV 533 (658)
Q Consensus 509 TlI--~Ds---Av-~~iM------------~~Vd~VivGAdaV 533 (658)
.++ ++. .. -.++ ..+|+.|+|.-.+
T Consensus 204 ~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~ 246 (345)
T 2o0m_A 204 RALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246 (345)
T ss_dssp CCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEH
T ss_pred EEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCc
Confidence 643 211 11 1112 2699999998643
No 293
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.66 E-value=1.8e+02 Score=26.17 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=47.3
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-~~ 555 (658)
..+|.|+|..|.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+ ..
T Consensus 7 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVF-AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcCC
Confidence 4578888887754 2334466777888886665543322 222 4788888543 3432 24444444433 45
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++||++++...
T Consensus 79 ~~~ii~lt~~~ 89 (184)
T 3rqi_A 79 DARILVLTGYA 89 (184)
T ss_dssp TCEEEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999987644
No 294
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=27.60 E-value=1e+02 Score=31.24 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=58.0
Q ss_pred CCEEEeeCCh------HHHHHHHHHHHHcCCeeEEEEeCCCCCchH----HHHHHHHHhCCCCE--------EE----Ec
Q 006164 455 GDVLLTYGSS------SAVEMILQHAHELGKQFRVVIVDSRPKHEG----KLLLRRLVRKGLSC--------TY----TH 512 (658)
Q Consensus 455 gdvILT~g~S------saV~~vL~~A~e~gk~f~ViV~ESRP~~EG----~~La~eL~~~GI~v--------Tl----I~ 512 (658)
..+|+..|+- ..+..++....+.+..++++++-..+..++ ..+.+.+.+.|++- .. +.
T Consensus 184 ~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~ 263 (413)
T 3oy2_A 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT 263 (413)
T ss_dssp SEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC
T ss_pred ceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC
Confidence 4567777762 222244444455566677776654443332 33344555578772 22 33
Q ss_pred chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 513 DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+..+..++..+|.+++-.. . . |.-...+=|-.+|+||++.
T Consensus 264 ~~~~~~~~~~adv~v~pS~--~-E-------~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 264 DERVDMMYNACDVIVNCSS--G-E-------GFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp HHHHHHHHHHCSEEEECCS--C-C-------SSCHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEeCCC--c-C-------CCCcHHHHHHHcCCCEEEc
Confidence 5578899999999988432 1 1 2223456678899999974
No 295
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.39 E-value=1.8e+02 Score=24.07 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCC-EEEEcchHHH--HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHh
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAIS--YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~-vTlI~DsAv~--~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~ 554 (658)
.++|+|+|..+.. ...+...|.+.|.. +....+..-+ .+-. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 5 ~~~iLivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSSTM-RRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEM-----NGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSS-----CHHHHHHHHHTS
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 4678888877654 33445677888886 5444443222 2222 4788887543 3332 244444444332
Q ss_pred ---CCCCeEeecccc
Q 006164 555 ---FHIPVLVCCEAY 566 (658)
Q Consensus 555 ---~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 77 SRFKEIPIIMITAEG 91 (129)
T ss_dssp TTCTTCCEEEEESCC
T ss_pred CCCCCCeEEEEeCCC
Confidence 378999987643
No 296
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=27.35 E-value=2.1e+02 Score=28.77 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch------HHHHH---hh-hc
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------AISYI---IH-EV 523 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds------Av~~i---M~-~V 523 (658)
...+++|.|.+.++..+++.+.+.|+ -+|++.+ |.+.+.. ..+...|+.+..+... -+..+ +. ++
T Consensus 99 ~~~i~~~~g~~~al~~~~~~l~~~g~-d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~ 173 (398)
T 3ele_A 99 ADNLYMTMGAAASLSICFRALTSDAY-DEFITIA--PYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERINAHT 173 (398)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCSTT-CEEEEES--SCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTTE
T ss_pred hHHEEEccCHHHHHHHHHHHHcCCCC-CEEEEeC--CCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcCC
Confidence 34678888877788766666544441 3555543 4454433 3344678888888532 12222 22 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHh------CCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~------~~VPVyV 561 (658)
.+|++- .---..|.++..---..++-+|+. |++.+++
T Consensus 174 ~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 216 (398)
T 3ele_A 174 RGVIIN-SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIA 216 (398)
T ss_dssp EEEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 455442 222233444444334455567777 8887765
No 297
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=27.01 E-value=4.5e+02 Score=25.64 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=51.9
Q ss_pred CEEEeeCChHHHHHHHHHHH----HcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcch--------HHHHHhhh
Q 006164 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~----e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (658)
.+++|.|.+.++..++..+. +.|. +|++.+ |.+-+...+ ..+...|+.+.++... .+-..+.+
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~gd--~vi~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVSA--VEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEET--TCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCCC--EEEECC--CCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence 46777776667765555443 3343 566643 334343332 4556689999888532 22222322
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=.++|+=..---..|.+.. --.++-+|+.|++ |++
T Consensus 138 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~ 172 (382)
T 4hvk_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHI 172 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEE
T ss_pred CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEE
Confidence 1233333222223344433 3467778999998 655
No 298
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=27.00 E-value=1.6e+02 Score=28.12 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=56.4
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh------
Q 006164 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (658)
.|.+||..|-+.-+.. +.+.+.++| .+|+++..+.......+..+|.+.|..+.++ .| ..+..++.
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678888888766543 334455555 4677765433333445667888778777765 33 24444554
Q ss_pred -hccEEEEcceeEecCCC-------------eecccchHHHHHHHHhC
Q 006164 522 -EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYGF 555 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~-------------VvNKiGT~~lAl~Ak~~ 555 (658)
.+|.||--|-. ...+. -+|-.|++.+.-.+..+
T Consensus 98 ~~~d~vi~~Ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 144 (274)
T 1ja9_A 98 GGLDFVMSNSGM-EVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKH 144 (274)
T ss_dssp SCEEEEECCCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCC-CCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666654422 11111 13667787776655543
No 299
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=26.97 E-value=1.9e+02 Score=28.38 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=53.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCCEEEEcc---hHHHHHhh-hccEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vTlI~D---sAv~~iM~-~Vd~VivG 529 (658)
+.|++.+.+.++..++..+.+.| -+|++. .|.+.+.... .. +...|+.+.++.. ..+-..+. ++..|++
T Consensus 15 ~~i~~~sG~~a~~~~~~~~~~~g--~~v~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~- 89 (331)
T 1pff_A 15 ACAATASGMGAIAASVWTFLKAG--DHLISD--DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYF- 89 (331)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEE-
T ss_pred eEEEeCChHHHHHHHHHHhcCCC--CEEEEc--CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEE-
Confidence 45544444566655555443333 456665 4566564333 33 4568999888853 22333332 3444544
Q ss_pred ceeEecCCCeecccchHHHHHHHHh-CCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~-~~VPVyV 561 (658)
..---..|.+.. -..++-+|++ |++++++
T Consensus 90 ~~~~nptG~~~~---~~~i~~~~~~~~~~~li~ 119 (331)
T 1pff_A 90 ETPANPTLKVID---IEDAVKQARKQKDILVIV 119 (331)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEE
T ss_pred ECCCCCcCcccC---HHHHHHHHhhhcCCEEEE
Confidence 222222455553 4567778999 9998776
No 300
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=26.94 E-value=1.1e+02 Score=33.33 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred HHHHHhccCCCEEEeeCCh---HHHHHHHHHHHHcCCeeEEEEeCC-C------C----------CchHHHHHHHHHhCC
Q 006164 446 KHAVTKIRDGDVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDS-R------P----------KHEGKLLLRRLVRKG 505 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S---saV~~vL~~A~e~gk~f~ViV~ES-R------P----------~~EG~~La~eL~~~G 505 (658)
+.|+++|++|++|-.++.. ..|...|.+..++-+.++++-.=+ . | ++-|.. .+++.+.|
T Consensus 15 eeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 93 (448)
T 3gk7_A 15 DEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPS-TRGSIAEG 93 (448)
T ss_dssp HHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTT-THHHHHHT
T ss_pred HHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHH-HHhHHhCC
Confidence 4566799999999998754 333333322222234577765411 1 1 112222 34555666
Q ss_pred -CCEEEEcchHHHHHhh----hccEEEEcceeEecCCCeec
Q 006164 506 -LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 506 -I~vTlI~DsAv~~iM~----~Vd~VivGAdaVlaNG~VvN 541 (658)
+..+-+..+.+..++. .+|.+|+.|...-.+|.+.-
T Consensus 94 ~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~ 134 (448)
T 3gk7_A 94 HGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCV 134 (448)
T ss_dssp SSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEEC
T ss_pred CeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEe
Confidence 3333345677877776 48999999999999998864
No 301
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=26.85 E-value=2.3e+02 Score=28.82 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=52.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc-----------hHHHHHhh-hc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-EV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-~V 523 (658)
.+++|.|.+.++..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+. ++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 161 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPG--SEVLLIE--PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT 161 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc
Confidence 78888888888876666554333 3566543 4444433 234567887766642 12222222 33
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 162 ~~v~l~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 162 RALIIN-SPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344332 1111223332211114677789999998776
No 302
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=26.80 E-value=1.6e+02 Score=30.17 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEE-eCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV-~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~--~V 523 (658)
.||.-|+++.++.+|. +++.|. ..+|.+ +-.+|...+ + -.+.|||+.+++. ..+...++ ++
T Consensus 99 ~vl~Sg~g~~l~~ll~-~~~~g~l~~~i~~Visn~~~~~~--~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 172 (292)
T 3lou_A 99 LIMVSKLEHCLADLLF-RWKMGELKMDIVGIVSNHPDFAP--L---AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGA 172 (292)
T ss_dssp EEEECSCCHHHHHHHH-HHHHTSSCCEEEEEEESSSTTHH--H---HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCCcCHHHHHH-HHHcCCCCcEEEEEEeCcHHHHH--H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCC
Confidence 5777788999977655 444453 344443 334555432 2 3467999998752 23444454 58
Q ss_pred cEEEEcce-eEe
Q 006164 524 TRVFLGAS-SVL 534 (658)
Q Consensus 524 d~VivGAd-aVl 534 (658)
|.|++-.= .|+
T Consensus 173 Dlivla~y~~il 184 (292)
T 3lou_A 173 ELVILARYMQVL 184 (292)
T ss_dssp SEEEESSCCSCC
T ss_pred CEEEecCchhhC
Confidence 88877543 344
No 303
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=26.74 E-value=2.6e+02 Score=28.23 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=45.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC--CCCEEEEcchHHHHHhhhccEEE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK--GLSCTYTHINAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~--GI~vTlI~DsAv~~iM~~Vd~Vi 527 (658)
.|.++|..|.+-+-..++..+.+.|-. +|+|+ +|-......++.++... ++.+..+....+...+.++|.||
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~-~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQ-KLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVV 199 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCS-EEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEE
Confidence 467888888876655556666655542 44544 44444556677777665 35666665556666777788776
No 304
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=26.52 E-value=66 Score=31.92 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred EEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEcc----hHHHHHhhh--ccEEEE
Q 006164 457 VLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHI----NAISYIIHE--VTRVFL 528 (658)
Q Consensus 457 vILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTlI~D----sAv~~iM~~--Vd~Viv 528 (658)
+||..|-+.-|..- ++.+.+.| .+|++++-.........+..|...+ +.+.. .| ..+..++.. +|.||-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG--IDLIVFDNLSRKGATDNLHWLSSLGNFEFVH-GDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSTTHHHHHHHHHTTCCCEEEE-CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCCCccCchhhhhhhccCCceEEEE-cCCCCHHHHHHHHhccCCCEEEE
Confidence 57777866555333 34444555 5677775322111223345565544 43322 23 345666777 888886
Q ss_pred cceeEecC-----C---CeecccchHHHHHHHHhCCCC-eEeecc
Q 006164 529 GASSVLSN-----G---TVCSRVGTACVAMVAYGFHIP-VLVCCE 564 (658)
Q Consensus 529 GAdaVlaN-----G---~VvNKiGT~~lAl~Ak~~~VP-VyV~ae 564 (658)
-|-....+ - --+|-.||..+.-+|+.+++. -+|.+-
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S 124 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 65432110 0 014678999999999998885 444433
No 305
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.50 E-value=59 Score=28.07 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=34.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC-CCCchHHHHHHHHHhC--CCCEEEEcch
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRK--GLSCTYTHIN 514 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES-RP~~EG~~La~eL~~~--GI~vTlI~Ds 514 (658)
.|..|.+..........+ . +...|.++++|. -|...|..+++.|.+. .+++.+++..
T Consensus 26 ~~~~v~~~~~~~~a~~~l---~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 26 FDFEVTTCESGPEALACI---K-KSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp TTSEEEEESSHHHHHHHH---H-HSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred cCceEEEeCCHHHHHHHH---H-cCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECC
Confidence 455666665554332222 2 244577787774 4888999999888875 4555555543
No 306
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=26.29 E-value=2.7e+02 Score=23.07 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=49.3
Q ss_pred cCCeeEEEEeCCCCCchHHHHHHHHHhCCC--CEEEEcch--HHHHHh------hhccEEEEcceeEecCCCeecccchH
Q 006164 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTHIN--AISYII------HEVTRVFLGASSVLSNGTVCSRVGTA 546 (658)
Q Consensus 477 ~gk~f~ViV~ESRP~~EG~~La~eL~~~GI--~vTlI~Ds--Av~~iM------~~Vd~VivGAdaVlaNG~VvNKiGT~ 546 (658)
..+..+|+|+|..+.. ...+...|...|. .|....+. ++..+- ...|.||+..+ +.++ -|--
T Consensus 6 ~~~~~~iLivdd~~~~-~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~~ 77 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIV-NFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGWE 77 (146)
T ss_dssp -CCEEEEEEECSCHHH-HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHHH
T ss_pred cCccceEEEEeCCHHH-HHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHHH
Confidence 3567889999888754 3344567788887 66666554 233332 23799988654 3332 2444
Q ss_pred HHHHHHH-----hCCCCeEeecccc
Q 006164 547 CVAMVAY-----GFHIPVLVCCEAY 566 (658)
Q Consensus 547 ~lAl~Ak-----~~~VPVyV~aety 566 (658)
.+..+-+ ...+|+++++...
T Consensus 78 ~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 78 LIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHhhhhccCCCeEEEEeCCC
Confidence 4444444 3589999887644
No 307
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=26.26 E-value=2.5e+02 Score=27.87 Aligned_cols=99 Identities=8% Similarity=0.104 Sum_probs=51.5
Q ss_pred CEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh-hccE
Q 006164 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 525 (658)
++|+..+. +.+++.+++.+.+.| -+|++.+. +++ |..+...+...|+.+..+... .+-..+. ++.+
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~g--d~vi~~~~-~~~-~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 147 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKK--DKVLVIDG-GSF-GHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTG 147 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTT--CCEEEEES-SHH-HHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCE
T ss_pred eEEEEcCChhHHHHHHHHhccCCC--CeEEEEeC-Chh-hHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceE
Confidence 45553333 556665555554333 34555432 222 344445566679888877421 1111122 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|++- .-=-..|.++. --.|+-+|+.|+++|++=
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~D 180 (376)
T 3f0h_A 148 LLVN-VDETSTAVLYD---TMMIGEFCKKNNMFFVCD 180 (376)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEEE
T ss_pred EEEe-cccCCcceecC---HHHHHHHHHHcCCEEEEE
Confidence 4432 21123455544 556778899999988863
No 308
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=26.22 E-value=46 Score=34.70 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=45.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc---c-hHHHHHhhhccEEE
Q 006164 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-NAISYIIHEVTRVF 527 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~---D-sAv~~iM~~Vd~Vi 527 (658)
+..+.+|+..|.+..-.++++.|++.| ++|++++..|...+..++ + -.++. | .++-.+..++|.|.
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~~p~~~~a----d----~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSEDCPCRYVA----H----EFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTGGGS----S----EEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCChhhhhC----C----EEEECCCCCHHHHHHHHHhCCcce
Confidence 456889999999987777888888765 578888877664443332 1 12221 1 24555566788777
Q ss_pred Eccee
Q 006164 528 LGASS 532 (658)
Q Consensus 528 vGAda 532 (658)
.+-+.
T Consensus 79 ~~~E~ 83 (377)
T 3orq_A 79 YEFEN 83 (377)
T ss_dssp ESSTT
T ss_pred ecccc
Confidence 76543
No 309
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=26.21 E-value=3.3e+02 Score=25.45 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh------
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (658)
.|.+||..|-++-+... .+.+.++| .+|+++..|.......+..+|...|..+.++ .| ..+..++.
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G--~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG--ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF 81 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35678888877665433 33444555 5788886665555566677888778777766 33 23444444
Q ss_pred -hccEEEEcce
Q 006164 522 -EVTRVFLGAS 531 (658)
Q Consensus 522 -~Vd~VivGAd 531 (658)
.+|.||--|-
T Consensus 82 ~~~d~vi~~Ag 92 (247)
T 2hq1_A 82 GRIDILVNNAG 92 (247)
T ss_dssp SCCCEEEECC-
T ss_pred CCCCEEEECCC
Confidence 5788777663
No 310
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.93 E-value=2.2e+02 Score=27.65 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=41.9
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcc----------hHHHHHhh--hcc
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 524 (658)
||..|.++....+|...++.+...+|. |+-.+|...|.+.| .+.||++.++.. ..+...++ ++|
T Consensus 6 vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 6 VLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERC---KKHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp EEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHH---HHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHH---HHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 444488888777777666544333443 23234555565544 557999987642 23334444 578
Q ss_pred EEEEcce-eEe
Q 006164 525 RVFLGAS-SVL 534 (658)
Q Consensus 525 ~VivGAd-aVl 534 (658)
.+|+-+= .|+
T Consensus 83 liv~a~y~~il 93 (216)
T 2ywr_A 83 LVVLAGFMRIL 93 (216)
T ss_dssp EEEESSCCSCC
T ss_pred EEEEeCchhhC
Confidence 7777443 444
No 311
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=25.88 E-value=73 Score=29.63 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=48.3
Q ss_pred EEEee-----CChHHHHHHHHHHHH-cCC--eeEEEEeCCCCCchH----HHHHHHHHhCCCCEEEEcchHHHHHhhhcc
Q 006164 457 VLLTY-----GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 457 vILT~-----g~SsaV~~vL~~A~e-~gk--~f~ViV~ESRP~~EG----~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (658)
.||.. |+|..-|.++++..+ .|. .|.|.=.-+.++..| .+....|.+.||+.....-.--...+.+.|
T Consensus 6 ~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~D 85 (161)
T 3jvi_A 6 KLLFVCLGNICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFD 85 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHHHCS
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhcCCC
Confidence 46655 457888888888654 443 688888888997766 345588999999864322221223455788
Q ss_pred EEEEc
Q 006164 525 RVFLG 529 (658)
Q Consensus 525 ~VivG 529 (658)
.||.=
T Consensus 86 lIl~M 90 (161)
T 3jvi_A 86 YIFAM 90 (161)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 87653
No 312
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=25.84 E-value=1.6e+02 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=32.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
+|.||.....+...|....++. ..++|||++.....+-..+++++.. .-.++++.
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~ 61 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQ 61 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEe
Confidence 3556666666666676665543 3577777776555444555555544 44566664
No 313
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=25.75 E-value=4.5e+02 Score=26.05 Aligned_cols=69 Identities=9% Similarity=0.080 Sum_probs=39.6
Q ss_pred cCCeeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEE---cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHH
Q 006164 477 LGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYT---HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (658)
Q Consensus 477 ~gk~f~ViV~-ESRP~~EG~~La~eL~~~GI~vTlI---~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~A 552 (658)
+...+++++. ...+ +-+..++++....=.++++ ...-+..+|..+|.+++.. |+. .+=|
T Consensus 227 ~~~~~~lv~~~g~~~--~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-------------~g~--~lEA 289 (376)
T 1v4v_A 227 AFPHLTFVYPVHLNP--VVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-------------GGL--QEEG 289 (376)
T ss_dssp HCTTSEEEEECCSCH--HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-------------HHH--HHHH
T ss_pred hCCCeEEEEECCCCH--HHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-------------cCH--HHHH
Confidence 3445676664 2222 1123334443321256666 3346778899999887542 333 4457
Q ss_pred HhCCCCeEee
Q 006164 553 YGFHIPVLVC 562 (658)
Q Consensus 553 k~~~VPVyV~ 562 (658)
-.+|+|+++.
T Consensus 290 ~a~G~PvI~~ 299 (376)
T 1v4v_A 290 AALGVPVVVL 299 (376)
T ss_dssp HHTTCCEEEC
T ss_pred HHcCCCEEec
Confidence 7889999975
No 314
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=25.73 E-value=2.3e+02 Score=28.67 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=56.0
Q ss_pred CEEEeeCChHHHHH-HHHHHH-HcCCeeEEEEeCCCCCch--------HHHHHHHHHhC-C----CC---EEEE-cc---
Q 006164 456 DVLLTYGSSSAVEM-ILQHAH-ELGKQFRVVIVDSRPKHE--------GKLLLRRLVRK-G----LS---CTYT-HI--- 513 (658)
Q Consensus 456 dvILT~g~SsaV~~-vL~~A~-e~gk~f~ViV~ESRP~~E--------G~~La~eL~~~-G----I~---vTlI-~D--- 513 (658)
.+||..|-+.-+.. +++.+. +.| .+|+++.-.+... -..+...|.+. + -. ++++ .|
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC--CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 46777777655433 334444 555 5777775443321 22332323332 1 02 3333 33
Q ss_pred -hHHHHHhh--h-ccEEEEcceeEecCC--------CeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 514 -NAISYIIH--E-VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 514 -sAv~~iM~--~-Vd~VivGAdaVlaNG--------~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..+..++. . +|.||--|-...... --+|-.||..+.-+|+.+++.-+|.+-+
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS 144 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS 144 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC
Confidence 24555565 3 777665553221100 0135679999999999999876665544
No 315
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=25.65 E-value=1.5e+02 Score=30.85 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=52.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-----------------HHHH
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------------AISY 518 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-----------------Av~~ 518 (658)
.+++|.|-+.++..+++.+.+.| -+|++.+ |.+.+... .+...|..+..+... -+..
T Consensus 120 ~v~~t~G~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~ 193 (447)
T 3b46_A 120 NVTVTTGANEGILSCLMGLLNAG--DEVIVFE--PFFDQYIP--NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQ 193 (447)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHH
T ss_pred hEEEeCCHHHHHHHHHHHHcCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEEeCCCccccccccccccCcccCHHH
Confidence 57888777778876666654434 3566655 66655433 334567776665411 1122
Q ss_pred Hhh----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 519 IIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 519 iM~----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+-. ++.+|++- .---..|.++.+-=-..|+-+|+.|++.+++
T Consensus 194 l~~~l~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~l~~~~~~~li~ 239 (447)
T 3b46_A 194 FEKAITSKTKAVIIN-TPHNPIGKVFTREELTTLGNICVKHNVVIIS 239 (447)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhccCCeEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 221 33344331 1111224444332233466788999987765
No 316
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.65 E-value=2.2e+02 Score=26.94 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=49.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~- 554 (658)
...+|.|+|..|.. ...|...|...|+.|....+..-+ .+-. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 22 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~-----~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 22 PEARVLVVDDEANI-VELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGM-----DGFGVLRRLRADG 93 (250)
T ss_dssp SSCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSS-----CHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 45789998888764 233456777889888766554322 2222 5899988643 3432 244444444443
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 94 ~~~~ii~lt~~~ 105 (250)
T 3r0j_A 94 IDAPALFLTARD 105 (250)
T ss_dssp CCCCEEEEECST
T ss_pred CCCCEEEEECCC
Confidence 479999987643
No 317
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=25.60 E-value=5.3e+02 Score=27.44 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=54.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHH--------HcCC----eeEEEEeCC-CCCchHHHHHHHHHhCCC-CEEEEcc------
Q 006164 454 DGDVLLTYGSSSAVEMILQHAH--------ELGK----QFRVVIVDS-RPKHEGKLLLRRLVRKGL-SCTYTHI------ 513 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~--------e~gk----~f~ViV~ES-RP~~EG~~La~eL~~~GI-~vTlI~D------ 513 (658)
.+..++|-|-|.++...|..+. +.|. +..|++.+. .+.. .-+..+...|. .+..+..
T Consensus 165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~---~~~~~~~g~g~~~v~~v~~~~~~~~ 241 (515)
T 2jis_A 165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI---QKGAAFLGLGTDSVRVVKADERGKM 241 (515)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH---HHHHHHTTSCGGGEEEECBCTTSCB
T ss_pred CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH---HHHHHHcCCCCCcEEEEecCCCCcC
Confidence 3567888777776655665553 1352 457777764 2322 22222222233 7877752
Q ss_pred --hHHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 514 --NAISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 514 --sAv~~iM~~------Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-..+.+ ..++|+....-...|.+. . --.|+-+|+.|++.|+|=+
T Consensus 242 d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~--l~~I~~la~~~g~~l~vD~ 296 (515)
T 2jis_A 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-P--LEAIADVCQRHGLWLHVDA 296 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-C--HHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-C--HHHHHHHHHHcCCeEEEeh
Confidence 233333433 134444332212234433 3 3467888999999998743
No 318
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=25.56 E-value=77 Score=32.26 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=52.3
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCC---eeEEEEeCCCCCchHHHHH-HH---HHhCCCCEEEEcch---------HH
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLL-RR---LVRKGLSCTYTHIN---------AI 516 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk---~f~ViV~ESRP~~EG~~La-~e---L~~~GI~vTlI~Ds---------Av 516 (658)
....+++|.|.+.++..+++.+.+.|. ..+|++.| .|.+.|...+ .. +...+..+..+... .+
T Consensus 97 ~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 175 (417)
T 3g7q_A 97 EPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPL-APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHL 175 (417)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESS-CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGC
T ss_pred CcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeC-CCccccchhhccchhhhccccCcccccCCcccccccCHHHh
Confidence 345788888888888666655543321 22677654 4555555433 11 12234444444321 11
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 517 ~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
- +-+++.+|++- .---..|.++..---..|+-+|++|++.+++=
T Consensus 176 ~-~~~~~~~v~~~-~p~NptG~~~~~~~~~~l~~~a~~~~~~li~D 219 (417)
T 3g7q_A 176 H-IGEETGMICVS-RPTNPTGNVITDEELMKLDRLANQHNIPLVID 219 (417)
T ss_dssp C-CCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred c-cccCceEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 1 11123333332 11122344444333456777899999988763
No 319
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=25.52 E-value=3.3e+02 Score=27.10 Aligned_cols=97 Identities=11% Similarity=0.049 Sum_probs=49.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---hHHHHHhhhc---cEEEEc
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEV---TRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---sAv~~iM~~V---d~VivG 529 (658)
+.|++-+-+.++..+++.+.+.| -.|++. .|.+.+.. ..+...|.++..+.. ..+-..+.+. .++++=
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~~g--d~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMAKE--DRIAAD--RLSHASLL--EAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHH--HHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEE
T ss_pred cEEEeCCcHHHHHHHHHHhCCCC--cEEEEc--ccccHHHH--HHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEE
Confidence 34444433666665555443223 244443 34554322 334457888877752 2333334332 344332
Q ss_pred ceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..---..|.++. --.++-+|++|++.+++
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 203 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMV 203 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 222233465554 35677789999987765
No 320
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=25.48 E-value=1.1e+02 Score=29.59 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=18.0
Q ss_pred ecccchHHHHHHHHhCCCCeEeec
Q 006164 540 CSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+|-.||..+.-+|+.+++.|+.+.
T Consensus 89 ~nv~~~~~l~~a~~~~~~~iv~~S 112 (292)
T 1vl0_A 89 INAIGPKNLAAAAYSVGAEIVQIS 112 (292)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEec
Confidence 467889999989988888555443
No 321
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.38 E-value=2e+02 Score=24.78 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=47.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHh-
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~- 554 (658)
+..+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~-----~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ-AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEM-----DGYALCRWLKGQP 77 (154)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSS-----CHHHHHHHHHHST
T ss_pred CCCcEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhCC
Confidence 45688888887654 334557777888888766554322 2222 5788888754 2222 244444444443
Q ss_pred --CCCCeEeecccc
Q 006164 555 --FHIPVLVCCEAY 566 (658)
Q Consensus 555 --~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 78 ~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 78 DLRTIPVILLTILS 91 (154)
T ss_dssp TTTTSCEEEEECCC
T ss_pred CcCCCCEEEEECCC
Confidence 479999987543
No 322
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=25.18 E-value=75 Score=34.52 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=50.1
Q ss_pred HHHHHhccCCCEEEeeCChHHHHHHHHHHHHc---CCeeEEEEeCC-CC--C--------------chHHHHHHHHHhCC
Q 006164 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS-RP--K--------------HEGKLLLRRLVRKG 505 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~---gk~f~ViV~ES-RP--~--------------~EG~~La~eL~~~G 505 (658)
+.++++|++|++|.+++....=..++....+. -+.++++..-+ .+ + +.|.. .+++.+.|
T Consensus 19 eEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 97 (434)
T 3eh7_A 19 EEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGN-SRKAVEEN 97 (434)
T ss_dssp HHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------------
T ss_pred HHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHH-HHHHHHCC
Confidence 34667899999999998543222223333222 23566653221 11 1 12211 23344444
Q ss_pred -CCEEEEcchHHHHHhh----hccEEEEcceeEecCCCeec
Q 006164 506 -LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 506 -I~vTlI~DsAv~~iM~----~Vd~VivGAdaVlaNG~VvN 541 (658)
+.+.-+..+.+..++. .+|.+|+.|...-.+|.+.-
T Consensus 98 ~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~ 138 (434)
T 3eh7_A 98 RADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF 138 (434)
T ss_dssp CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC
T ss_pred CccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe
Confidence 3443445677777776 58999999999999998864
No 323
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=25.16 E-value=3.5e+02 Score=28.85 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=51.9
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-c---------hHHHHHhhh
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I---------NAISYIIHE 522 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-D---------sAv~~iM~~ 522 (658)
...++++|-|.+.++..++.... .+..-.|+|.+ |.+.+..- .+...|..+..+. | ..+-..+.+
T Consensus 156 ~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 230 (500)
T 3tcm_A 156 NADDIFLTDGASPGVHLMMQLLI-RNEKDGILVPI--PQYPLYSA--SIALHGGALVPYYLNESTGWGLETSDVKKQLED 230 (500)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHC-CSTTEEEEEEE--SCCTHHHH--HHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHH
T ss_pred CcccEEEcCCHHHHHHHHHHHHc-CCCCCEEEEeC--CCcHhHHH--HHHHcCCEEEEEecccccCCCCCHHHHHHHHHH
Confidence 34578888888888865555442 12223555543 54444332 3444677766553 2 122333332
Q ss_pred -------ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 -------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 -------Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..|++- .-=-.-|.+++.---..|+-+|+.|++.+++
T Consensus 231 ~~~~~~~~k~ivl~-~p~NPtG~~~s~~~l~~i~~la~~~~~~li~ 275 (500)
T 3tcm_A 231 ARSRGINVRALVVI-NPGNPTGQVLAEENQYDIVKFCKNEGLVLLA 275 (500)
T ss_dssp HHHTTCEEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhcCCCceEEEEE-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2233221 1111234444444344566678888887776
No 324
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.06 E-value=1.4e+02 Score=25.64 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH-h
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-G 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-~ 554 (658)
...+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+- .++ -|.-.+..+-+ .
T Consensus 13 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 13 RRPEILLVDSQEVI-LQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQM-----DGPTLLARIHQQY 84 (153)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHHC
T ss_pred CCceEEEECCCHHH-HHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcC-----cHHHHHHHHHhHC
Confidence 45678888877654 334456677778877766554222 2222 57888886542 222 24334444433 3
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 85 ~~~~ii~~s~~~ 96 (153)
T 3hv2_A 85 PSTTRILLTGDP 96 (153)
T ss_dssp TTSEEEEECCCC
T ss_pred CCCeEEEEECCC
Confidence 579999987644
No 325
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.02 E-value=62 Score=27.61 Aligned_cols=80 Identities=10% Similarity=0.031 Sum_probs=47.8
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCC-CCEEEEcchH-HH-HHh---hhccEEEEcceeEecCCCeecccchHHHHHHH
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINA-IS-YII---HEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~G-I~vTlI~DsA-v~-~iM---~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~A 552 (658)
...+|+|+|..+.. ...|...|.+.| +.|....+.. .. .+. ...|.||+..+ +.+ .-|.-.+..+-
T Consensus 19 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~-----~~g~~~~~~l~ 90 (146)
T 4dad_A 19 GMINILVASEDASR-LAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALD-----TAELAAIEKLS 90 (146)
T ss_dssp GGCEEEEECSCHHH-HHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCC-----HHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCC-----ccHHHHHHHHH
Confidence 45788888877754 234456777778 8887776654 22 222 35788888654 222 22333343333
Q ss_pred Hh-CCCCeEeecccc
Q 006164 553 YG-FHIPVLVCCEAY 566 (658)
Q Consensus 553 k~-~~VPVyV~aety 566 (658)
+. .++||++++...
T Consensus 91 ~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 91 RLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHCTTCEEEEEESCC
T ss_pred HhCCCCcEEEEeCCC
Confidence 33 479999987643
No 326
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.93 E-value=2.4e+02 Score=26.03 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=47.2
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhCCC
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~V 557 (658)
.+|+|+|..|.. ...|...|...|+.|....+.. +..+-. ..|.||+..+ +.+. -|.-.+..+-+..++
T Consensus 5 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~l~~~~~~ 76 (230)
T 2oqr_A 5 TSVLIVEDEESL-ADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGM-----SGTDVCKQLRARSSV 76 (230)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHHCSC
T ss_pred CeEEEEeCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCC-----CHHHHHHHHHcCCCC
Confidence 578888877754 2334466777888877655432 222222 5788888654 2322 244445555555789
Q ss_pred CeEeecccc
Q 006164 558 PVLVCCEAY 566 (658)
Q Consensus 558 PVyV~aety 566 (658)
|+++++...
T Consensus 77 ~ii~lt~~~ 85 (230)
T 2oqr_A 77 PVIMVTARD 85 (230)
T ss_dssp SEEEEECCH
T ss_pred CEEEEeCCC
Confidence 999987654
No 327
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=24.83 E-value=2.5e+02 Score=25.95 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEcchHHHHHhh----------------hccEEEEcceeEecCCCeec
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINAISYIIH----------------EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI-~vTlI~DsAv~~iM~----------------~Vd~VivGAdaVlaNG~VvN 541 (658)
...+|+|+|..|.. -..|...|.+.|+ .|....+..-+.-+- ..|.||+ |..+.+.+
T Consensus 60 ~~~~ILiVdDd~~~-~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlill--D~~lp~~~--- 133 (206)
T 3mm4_A 60 RGKRVLVVDDNFIS-RKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM--DCQMPEMD--- 133 (206)
T ss_dssp TTCEEEEECSCHHH-HHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEE--ESCCSSSC---
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEE--cCCCCCCC---
Q ss_pred ccchHHHHHHHHh-----CCCCeEeecc
Q 006164 542 RVGTACVAMVAYG-----FHIPVLVCCE 564 (658)
Q Consensus 542 KiGT~~lAl~Ak~-----~~VPVyV~ae 564 (658)
|.-.+..+-+. .++||++++.
T Consensus 134 --G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 134 --GYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp --HHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred --HHHHHHHHHhhhhhcCCCCcEEEEEC
No 328
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.82 E-value=1.9e+02 Score=24.36 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=46.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCC--EEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLS--CTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~--vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
...+|+|+|..+.. ...+...|...|.. +....+..-+ ..+. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 4 ~~~~ILivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDD-IALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PI-----ANGFEVMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHH-HHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GG-----GCHHHHHHHHHS
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHh
Confidence 35688888887654 33445778888888 4444333222 2222 57888887542 22 224444444443
Q ss_pred ---hCCCCeEeecccc
Q 006164 554 ---GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ---~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 76 ~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 76 PGANQHTPIVILTDNV 91 (144)
T ss_dssp SSTTTTCCEEEEETTC
T ss_pred cccccCCCEEEEeCCC
Confidence 3579999998643
No 329
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=24.77 E-value=4.5e+02 Score=26.99 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=50.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-------cCCeeEEEEeCCCCCchHHHH-HHHH-----HhCCC-----CEEEEc--c-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRL-----VRKGL-----SCTYTH--I- 513 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-------~gk~f~ViV~ESRP~~EG~~L-a~eL-----~~~GI-----~vTlI~--D- 513 (658)
..+++|-|-+.+++.+|+.+.. .|+ -+|++.+ |.+-|... +..+ ...|. .+..+. |
T Consensus 115 ~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~-~~vi~~~--~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 191 (420)
T 2pb2_A 115 ERVLFMNSGTEANETAFKLARHYACVRHSPFK-TKIIAFH--NAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL 191 (420)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEET--TCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhhccCCCC-CEEEEEe--CCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH
Confidence 4567777777788777776543 243 3666665 33323211 1111 12221 255554 2
Q ss_pred hHHHHHhh-hccEEEEcceeEecCCCe--ecccchHHHHHHHHhCCCCeEe
Q 006164 514 NAISYIIH-EVTRVFLGASSVLSNGTV--CSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 514 sAv~~iM~-~Vd~VivGAdaVlaNG~V--vNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+-..+. ++.+|++ +.+...|++ +..-=--.++-+|+.|++.+++
T Consensus 192 ~~le~~i~~~~~~vi~--~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~ 240 (420)
T 2pb2_A 192 HAVKAVMDDHTCAVVV--EPIQGEGGVQAATPEFLKGLRDLCDEHQALLVF 240 (420)
T ss_dssp HHHHHHCCTTEEEEEE--CSEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCceEEEE--eCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333333 3334443 334444443 2222224566789999997775
No 330
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=24.73 E-value=3.1e+02 Score=28.01 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=52.9
Q ss_pred ccCCCEEEeeCChHHHH--HHHHHHHH--cC--------CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc------
Q 006164 452 IRDGDVLLTYGSSSAVE--MILQHAHE--LG--------KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------ 513 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~--~vL~~A~e--~g--------k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D------ 513 (658)
+....+++|.|.+.++. .++..... .| ..-+|+|.+ |.+.+.. ..+...|..+..+..
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~--p~y~~~~--~~~~~~g~~~~~v~~~~~g~d 168 (427)
T 3ppl_A 93 VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV--PGYDRHF--SITERFGFEMISVPMNEDGPD 168 (427)
T ss_dssp SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE--SCCHHHH--HHHHHTTCEEEEEEEETTEEC
T ss_pred CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC--CCcHHHH--HHHHHcCCEEEEeCCCCCCCC
Confidence 33457888888888873 44444333 21 133566543 6665543 344557888777642
Q ss_pred -hHHHHHhh--hccEEEEcceeEecCCCeecccchH-------HHHHHH-HhCCCCeEe
Q 006164 514 -NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVA-YGFHIPVLV 561 (658)
Q Consensus 514 -sAv~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~-------~lAl~A-k~~~VPVyV 561 (658)
..+-..+. ++.+ |+-+...-|..|+. .++-+| +.|++.|++
T Consensus 169 ~~~l~~~l~~~~~~~-------v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 169 MDAVEELVKNPQVKG-------MWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp HHHHHHHTTSTTEEE-------EEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCeE-------EEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 22333332 2222 33333444555553 566667 888876665
No 331
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=24.68 E-value=2.2e+02 Score=27.78 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh------
Q 006164 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (658)
.|.+||..|-|+-+...+ +.+.++| .+|+++..++......+..+|.+.|.++.++ +| ..+..++.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467888888877664333 4444555 5788776554333345567788888777766 34 23333333
Q ss_pred -hccEEEEcceeEecCCCe-------------ecccchHHHHHHHHhC
Q 006164 522 -EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF 555 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~ 555 (658)
.+|.||--|-. ...+.+ +|-.|++.+.-++..+
T Consensus 106 g~iD~lv~~Ag~-~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 152 (283)
T 1g0o_A 106 GKLDIVCSNSGV-VSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKH 152 (283)
T ss_dssp SCCCEEEECCCC-CCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCc-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47777766532 222221 4667888777666554
No 332
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=24.64 E-value=57 Score=31.63 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=19.4
Q ss_pred ecccchHHHHHHHHhCCCCeEeecc
Q 006164 540 CSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.|-.||..+.-+|+.+++.|+.+.-
T Consensus 82 ~n~~~~~~l~~~~~~~~~~~v~~SS 106 (287)
T 3sc6_A 82 INAIGARNVAVASQLVGAKLVYIST 106 (287)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEch
Confidence 4667899999999999988655543
No 333
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.62 E-value=1.7e+02 Score=24.34 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=44.2
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh-C
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~ 555 (658)
..+|+|+|..+.. ...+...|...|+.|....+. ++..+-. ..|.||+..+- ..+..-..-|--.+..+-+. .
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGV-LTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhCc
Confidence 3577777776543 334456677778877765543 2222222 47888876542 10000012233334334333 4
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++|+++++...
T Consensus 80 ~~~ii~ls~~~ 90 (140)
T 2qr3_A 80 DLPVVLFTAYA 90 (140)
T ss_dssp TCCEEEEEEGG
T ss_pred CCCEEEEECCC
Confidence 79999987644
No 334
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=24.60 E-value=3.5e+02 Score=27.38 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=50.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch-------HHHHH---hh-hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYI---IH-EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds-------Av~~i---M~-~V 523 (658)
..+++|.|.+.++..++..+.+.| -+|++.+ |.+.+... .+...|+.+..+... -+..+ +. ++
T Consensus 102 ~~v~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 175 (406)
T 1xi9_A 102 DDVRVTAAVTEALQLIFGALLDPG--DEILVPG--PSYPPYTG--LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT 175 (406)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHH--HHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCccHHH--HHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCc
Confidence 467777777777766665553333 3555543 45555333 334568777666421 12222 22 23
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 176 ~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 176 KAIAVI-NPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEE-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 333331 1111223333222234566678889987776
No 335
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=24.60 E-value=1.7e+02 Score=29.54 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCCeEeecc
Q 006164 546 ACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV~ae 564 (658)
+..+++|+..+||++...-
T Consensus 125 ~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 125 LIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp HHHHHHHHHTTCCEEEECC
T ss_pred hHHHHHHHHhCCCEEEEec
Confidence 4456789999999988753
No 336
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=24.57 E-value=1.5e+02 Score=29.78 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
..+++|.|.+.++..+++.+.+.|+ -+|++. .|.+.+...+ +...|.++..+.
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~-d~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~ 128 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGK-DAILYC--PPTYGMYSVS--AETIGVECRTVP 128 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTT-CEEEEC--SSSCTHHHHH--HHHHTCEEEECC
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCC-CEEEEe--CCChHHHHHH--HHHcCCEEEEee
Confidence 4577887777777665555433341 356554 4777665544 233577776664
No 337
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=24.56 E-value=3.5e+02 Score=27.11 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=53.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHc--------CCeeEEEEeCCCCCchHHHHH-HHHHhC----------CCCEEEEcch-
Q 006164 455 GDVLLTYGSSSAVEMILQHAHEL--------GKQFRVVIVDSRPKHEGKLLL-RRLVRK----------GLSCTYTHIN- 514 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~--------gk~f~ViV~ESRP~~EG~~La-~eL~~~----------GI~vTlI~Ds- 514 (658)
..+++|-|-+.+++.+|+.+... ...-+|++.+ |.+-|..+. ..+... ...+..+..+
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCE--DNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD 171 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEET--TCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEc--CCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence 45677777777777777755443 1223555543 222222221 122111 1134555322
Q ss_pred --HHHHHhh-hccEEEEcceeEecCCCeecccc-hHHHHHHHHhCCCCeEee
Q 006164 515 --AISYIIH-EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 515 --Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiG-T~~lAl~Ak~~~VPVyV~ 562 (658)
.+-..+. ++.+|++-. ---..|.+...-. --.|+-+|+.|++.+++=
T Consensus 172 ~~~l~~~l~~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D 222 (392)
T 3ruy_A 172 LEALKAAITPNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVAD 222 (392)
T ss_dssp HHHHHHHCCTTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhccCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3333332 444555532 2223366666666 667888999999988763
No 338
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=24.54 E-value=2.1e+02 Score=31.38 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=67.8
Q ss_pred hccCCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEe-CCCC------------CchHHHHHHHHHhCCCCEEEE-cc--
Q 006164 451 KIRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIV-DSRP------------KHEGKLLLRRLVRKGLSCTYT-HI-- 513 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~-ESRP------------~~EG~~La~eL~~~GI~vTlI-~D-- 513 (658)
.+..+.++|..|-+.-+...| +...++|.. +|+++ .-++ .....++..+|.+.|..++++ +|
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~-~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvt 325 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARDGAG-HLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLT 325 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHHTCC-EEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTT
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHcCCC-EEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCC
Confidence 356678888888776654333 334455543 34443 3222 122356778899999998887 33
Q ss_pred --hHHHHHhhh------ccEEEEcceeEecCCCe-------------ecccchHHHHHHHHhCC-----CCeEeeccc
Q 006164 514 --NAISYIIHE------VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFH-----IPVLVCCEA 565 (658)
Q Consensus 514 --sAv~~iM~~------Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~~-----VPVyV~aet 565 (658)
.++..++.+ +|.||-.| .+..+|.+ .|-.|++.+.-++..+. ..++|++-+
T Consensus 326 d~~~v~~~~~~i~~~g~id~vVh~A-Gv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 326 DAEAAARLLAGVSDAHPLSAVLHLP-PTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp SHHHHHHHHHTSCTTSCEEEEEECC-CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECC-cCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 356666664 56666655 34444443 25578888888777766 677776543
No 339
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=24.44 E-value=2.4e+02 Score=29.29 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=44.9
Q ss_pred CEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHH--------hCCCC------EEEEc--c-hHH
Q 006164 456 DVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV--------RKGLS------CTYTH--I-NAI 516 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~--------~~GI~------vTlI~--D-sAv 516 (658)
.+++|.|-+.+++.+|+.|.. .++ -+|++.+ |.+-|.... ..+. ..|++ +..+. | ..+
T Consensus 115 ~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~--~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 191 (453)
T 2cy8_A 115 KLRFTGSGTETTLLALRVARAFTGR-RMILRFE--GHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGM 191 (453)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHCC-CEEEEEC--C----------------------------CGGGEEEECTTCHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEc--CCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHHH
Confidence 566777777788777776432 233 3677777 444444332 1111 13553 33332 2 233
Q ss_pred HHHhhh---ccEEEEcceeEecC-CCeecccch-HHHHHHHHhCCCCeEe
Q 006164 517 SYIIHE---VTRVFLGASSVLSN-GTVCSRVGT-ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 517 ~~iM~~---Vd~VivGAdaVlaN-G~VvNKiGT-~~lAl~Ak~~~VPVyV 561 (658)
-..+.+ -.++|+ ++-+..+ |.++..-+- -.|+-+|++|++.+++
T Consensus 192 e~~l~~~~~~~~~vi-~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 192 REVFANHGSDIAAFI-AEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp HHHHHHHGGGEEEEE-ECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCEEEEE-ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344442 112322 3334443 334433332 3466689999997665
No 340
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=24.42 E-value=49 Score=30.15 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=46.2
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHh-CCC
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FHI 557 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~-~~V 557 (658)
+..+|+|+|..+.. ...+...|...|+.+....++.-+. -...|.||+..+ +.+. + |. .+..+.+. ..+
T Consensus 11 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al-~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~~~~ 80 (196)
T 1qo0_D 11 RELQVLVLNPPGEV-SDALVLQLIRIGCSVRQCWPPPEAF-DVPVDVVFTSIF--QNRH---H--DE-IAALLAAGTPRT 80 (196)
T ss_dssp GGCEEEEESCTTHH-HHHHHHHHHHHTCEEEEECSCCSSC-SSCCSEEEEECC--SSTH---H--HH-HHHHHHHSCTTC
T ss_pred cCCeEEEEcCChhH-HHHHHHHHHHcCCeEEEecCchhhC-CCCCCEEEEeCC--CCcc---c--hH-HHHHHhccCCCC
Confidence 35678888877754 2334456667788887666543211 225788887643 2221 1 44 34444444 589
Q ss_pred CeEeecccc
Q 006164 558 PVLVCCEAY 566 (658)
Q Consensus 558 PVyV~aety 566 (658)
||++++...
T Consensus 81 ~ii~lt~~~ 89 (196)
T 1qo0_D 81 TLVALVEYE 89 (196)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEcCC
Confidence 999987643
No 341
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=24.39 E-value=1.8e+02 Score=28.65 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHHhCC--CCEEEEcchHH
Q 006164 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLVRKG--LSCTYTHINAI 516 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~~~G--I~vTlI~DsAv 516 (658)
.+.|+..+..+++.|.+||=.|+++-.. .+.-|.. .....+|+-+|-.|.. .+.+ +.+.+.| .+|+++...+.
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~-~~~la~~~~~~~~~v~gvD~s~~m--l~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAA-TLSVRRNIHHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHH-HHHHHHTCCSSSCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHH-HHHHHHhcCCCCCEEEEEECCHHH--HHHHHHHHHhhccCceEEEeecccc
Confidence 3457777788899999999999986431 1122221 1245789988866532 2344 3455555 46888875543
Q ss_pred HHHhhhccEEE
Q 006164 517 SYIIHEVTRVF 527 (658)
Q Consensus 517 ~~iM~~Vd~Vi 527 (658)
..-....|.|+
T Consensus 134 ~~~~~~~d~v~ 144 (261)
T 4gek_A 134 DIAIENASMVV 144 (261)
T ss_dssp TCCCCSEEEEE
T ss_pred cccccccccce
Confidence 32233444443
No 342
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=24.36 E-value=1.6e+02 Score=29.26 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh-hccE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vd~ 525 (658)
..+++|-|.+.++..++..+.+.|. +|++.+ |.+.+. ...+...|+.+..+... .+-..+. ++..
T Consensus 85 ~~v~~~~g~t~a~~~~~~~~~~~gd--~vl~~~--~~~~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 158 (363)
T 3ffh_A 85 EELIFTAGVDELIELLTRVLLDTTT--NTVMAT--PTFVQY--RQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTI 158 (363)
T ss_dssp GGEEEESSHHHHHHHHHHHHCSTTC--EEEEEE--SSCHHH--HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEE
T ss_pred hhEEEeCCHHHHHHHHHHHHccCCC--EEEEcC--CChHHH--HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCE
Confidence 4677777777777666655543343 566654 555553 23445568888877532 2222232 4455
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHHhC--CCCeEe
Q 006164 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 526 VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
|++ ..---..|.++..- .+.-+++.+ ++.+++
T Consensus 159 v~~-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 192 (363)
T 3ffh_A 159 VWI-CNPNNPTGNYIELA---DIQAFLDRVPSDVLVVL 192 (363)
T ss_dssp EEE-ESSCTTTCCCCCHH---HHHHHHTTSCTTSEEEE
T ss_pred EEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCcEEEE
Confidence 554 22222234333222 355556665 776665
No 343
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=24.24 E-value=1.6e+02 Score=28.09 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh-------
Q 006164 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 521 (658)
+.++|..|-++-+...| +.+.++| .+|+++..+.......+..+|.+.|..+.++ .| ..+..++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56778878776554333 3344444 5788877776666677778888888888766 33 23444444
Q ss_pred hccEEEEcceeEecCCC-------------eecccchHHHHHHH----HhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVA----YGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~-------------VvNKiGT~~lAl~A----k~~~VPVyV~ 562 (658)
++|.+|--|- +...+. -+|-.|++.+.-.+ +..+...+|.
T Consensus 82 ~id~lv~nAg-~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~ 138 (246)
T 3osu_A 82 SLDVLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIIN 138 (246)
T ss_dssp CCCEEEECCC-CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788776663 222222 13677888877766 3444444444
No 344
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.12 E-value=2.1e+02 Score=23.34 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=46.4
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH---
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak--- 553 (658)
..+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAA-AETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHH-HHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhhc
Confidence 3578888877653 334456777888877776654322 2222 57888887642 22 224444444444
Q ss_pred hCCCCeEeecccc
Q 006164 554 GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 75 ~~~~~ii~~s~~~ 87 (127)
T 3i42_A 75 EKTSKFVAVSGFA 87 (127)
T ss_dssp SSCCEEEEEECC-
T ss_pred cCCCCEEEEECCc
Confidence 3579999987644
No 345
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=24.11 E-value=3e+02 Score=27.53 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhh----h
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----E 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~----~ 522 (658)
..+++|.|-+.++..+++.+.+.| -+|++.+ |.+.+.. ..+...|+.+..+... -+..+-. +
T Consensus 79 ~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 152 (381)
T 1v2d_A 79 ESVVVTSGATEALYVLLQSLVGPG--DEVVVLE--PFFDVYL--PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR 152 (381)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT
T ss_pred hhEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC
Confidence 357888877778876666654333 3555543 3444433 2345578887776432 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..|++- .---..|.++..-=-..++-+|+.|++.+++
T Consensus 153 ~~~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 153 TRALLLN-TPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3344332 1111123333221124566788899988776
No 346
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=23.79 E-value=46 Score=31.52 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=41.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHH----HHHHHHhCCC
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHI 557 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~----lAl~Ak~~~V 557 (658)
+|.|+|---.+- ..+.+.|.+.|++++++.|.. .+..+|.||+ +-|+-....+-.. +.-.+.+.++
T Consensus 4 ~I~iiD~g~~n~-~si~~al~~~G~~~~v~~~~~---~l~~~D~lil------PG~g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 4 NVVIIDTGCANI-SSVKFAIERLGYAVTISRDPQ---VVLAADKLFL------PGVGTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp CEEEECCCCTTH-HHHHHHHHHTTCCEEEECCHH---HHHHCSEEEE------CCCSCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred EEEEEECCCChH-HHHHHHHHHCCCEEEEECCHH---HHhCCCEEEE------CCCCCHHHHHHHHHhcChHHHHHHcCC
Confidence 355555322211 456788999999999887643 4567888765 2222111111111 1223556899
Q ss_pred CeEeeccc
Q 006164 558 PVLVCCEA 565 (658)
Q Consensus 558 PVyV~aet 565 (658)
||+-+|=-
T Consensus 74 PvlGIClG 81 (211)
T 4gud_A 74 PLLGICLG 81 (211)
T ss_dssp CEEEETHH
T ss_pred CEEEEchh
Confidence 99977643
No 347
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=23.76 E-value=1.4e+02 Score=29.56 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=49.7
Q ss_pred CEEEeeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhhhcc
Q 006164 456 DVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd 524 (658)
.+++|.|-+.++..+++.+ .+.| -+|++. .|.+.+...+ +...|+.+.++... .+-..+.+-.
T Consensus 49 ~v~~~~ggt~al~~~~~~~~~~~~~g--d~Vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~ 122 (375)
T 2fnu_A 49 HALVFNSATSALLTLYRNFSEFSADR--NEIITT--PISFVATANM--LLESGYTPVFAGIKNDGNIDELALEKLINERT 122 (375)
T ss_dssp EEEEESCHHHHHHHHHHHSSCCCTTS--CEEEEC--SSSCTHHHHH--HHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCC--CEEEEC--CCccHhHHHH--HHHCCCEEEEeccCCCCCCCHHHHHhhcCcCc
Confidence 5677776667776666554 2233 356553 4555555443 33478888776422 1111111112
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++|+-++. .|.+.. --.++-+|+.|++++++
T Consensus 123 ~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~ 153 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLS 153 (375)
T ss_dssp EEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEE
Confidence 33332222 454433 25677788999988776
No 348
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=23.76 E-value=2.3e+02 Score=23.16 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=45.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCC
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VP 558 (658)
+|.|+|..|.. ...+...|.+.|..|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+.+++|
T Consensus 4 ~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~~~ 75 (120)
T 3f6p_A 4 KILVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYDMP 75 (120)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCCSC
T ss_pred eEEEEECCHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 67777776643 2334466777888877665543222 222 5788887543 3332 3555555565667899
Q ss_pred eEeecccc
Q 006164 559 VLVCCEAY 566 (658)
Q Consensus 559 VyV~aety 566 (658)
+++++...
T Consensus 76 ii~~t~~~ 83 (120)
T 3f6p_A 76 IIMLTAKD 83 (120)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 99987543
No 349
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.67 E-value=4.1e+02 Score=23.99 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-ch-HHHHHhh-
Q 006164 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN-AISYIIH- 521 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~-Ds-Av~~iM~- 521 (658)
.+.++++|.+...|..+|.++.-. + +..+...|...|++|.++. +. .....+.
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~~-~-----------------------a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 84 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSAA-V-----------------------AVFLGHGLNSLGIRTTVLTEGGSTLTITLAN 84 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGHH-H-----------------------HHHHHHHHHHTTCCEEEECCCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEEEecCchHH-H-----------------------HHHHHHHHHhcCCCEEEecCCchhHHHHHhc
Confidence 344555666667888887764321 1 1134456677899998888 43 3332333
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 522 --~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+=|.||+ |-..|.. .-+..++-.||..|+++++++..
T Consensus 85 ~~~~d~~i~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 85 LRPTDLMIG----VSVWRYL---RDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CCTTEEEEE----ECCSSCC---HHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCCEEEE----EeCCCCC---HHHHHHHHHHHHCCCCEEEEeCC
Confidence 3344443 3334533 34677778899999999998753
No 350
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.66 E-value=1.3e+02 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
.+.+.+.+.|...+|++.+ .+...+...|+++.-+.
T Consensus 34 ~La~~L~~~GheV~v~~~~--------~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 34 PLSWALRAAGHEVLVAASE--------NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp HHHHHHHHTTCEEEEEEEG--------GGHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCEEEEEcCH--------HHHHHHHhCCCeeEecC
Confidence 4455556677766666532 13456777899887775
No 351
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=23.65 E-value=3.5e+02 Score=27.54 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=45.6
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcce
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAd 531 (658)
.+..+|+.+|.+..-...++.+.+.....+|+|.+-.+ ....+|+.++...++++. ..+ +..++ ++|.|++..-
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~-~~a~~la~~~~~~~~~~~-~~~--~~e~v-~aDvVi~aTp 196 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE-KAAKKFVSYCEDRGISAS-VQP--AEEAS-RCDVLVTTTP 196 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH-HHHHHHHHHHHHTTCCEE-ECC--HHHHT-SSSEEEECCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH-HHHHHHHHHHHhcCceEE-ECC--HHHHh-CCCEEEEeeC
Confidence 36779999999876545555444433334666665433 345567777776667766 433 33445 7999987653
No 352
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=23.55 E-value=4.2e+02 Score=25.97 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=40.6
Q ss_pred eeEE-EEeCCCCCchHHHHHHHHHhCCC-CEEEEcc-hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCC
Q 006164 480 QFRV-VIVDSRPKHEGKLLLRRLVRKGL-SCTYTHI-NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 480 ~f~V-iV~ESRP~~EG~~La~eL~~~GI-~vTlI~D-sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
.+++ +++-..+. .++-..+.+.|+ ++++.-- .-+..+|..+|.+|+-+ | ....+=|-.+|
T Consensus 212 ~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s------g--------~~~~~EAma~G 274 (364)
T 1f0k_A 212 SVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRS------G--------ALTVSEIAAAG 274 (364)
T ss_dssp GEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECC------C--------HHHHHHHHHHT
T ss_pred CcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECC------c--------hHHHHHHHHhC
Confidence 5674 44544442 344444555665 4565532 46778889999988753 2 33445566779
Q ss_pred CCeEee
Q 006164 557 IPVLVC 562 (658)
Q Consensus 557 VPVyV~ 562 (658)
+||++.
T Consensus 275 ~Pvi~~ 280 (364)
T 1f0k_A 275 LPALFV 280 (364)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 999986
No 353
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.50 E-value=2e+02 Score=23.34 Aligned_cols=78 Identities=14% Similarity=0.156 Sum_probs=44.7
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHHh---
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--- 554 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~--- 554 (658)
.+|.|+|..+.. ...+...|...|+.+....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 3 ~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 3 RRILVVEDEAPI-REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESMT 74 (127)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTTT
T ss_pred cEEEEEcCCHHH-HHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCccc
Confidence 367788877643 3344566777888877655432222 122 4788887543 3322 244444444443
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
.++|+++++...
T Consensus 75 ~~~~ii~~s~~~ 86 (127)
T 2jba_A 75 RDIPVVMLTARG 86 (127)
T ss_dssp TTSCEEEEEETT
T ss_pred CCCCEEEEeCCC
Confidence 479999987643
No 354
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=23.49 E-value=2.7e+02 Score=27.35 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=58.7
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEc-c----hHHHHHhh--hcc
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH-I----NAISYIIH--EVT 524 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~-D----sAv~~iM~--~Vd 524 (658)
.+.+||..|-+.-+..- .+.+.++| .+|+++.-++.. ...+..++.. .+-.++++. | ..+..++. .+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVNS-KREAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSSS-CTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCcc-hHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 35688888877655433 33444555 567777644432 2233333332 133344442 2 34566666 567
Q ss_pred EEEEcceeEecCC--------CeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 525 RVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 525 ~VivGAdaVlaNG--------~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
.||--|-....+. --.|-.||..+.-+|+.+++.-+|..-+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 6665442211000 0126678999998999999876665544
No 355
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=23.47 E-value=6.7e+02 Score=28.51 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred HHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC------Cch--------H----HHHHHHHHhC--C
Q 006164 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KHE--------G----KLLLRRLVRK--G 505 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP------~~E--------G----~~La~eL~~~--G 505 (658)
+.+.+.|. +..||.+|.+.+=..+++.+...|.. ++.++|... ..| | ..++..|.+. +
T Consensus 318 ~~g~ekL~-~arVLIVGaGGLGs~vA~~La~aGVG-~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~ 395 (615)
T 4gsl_A 318 DLNLDIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL 395 (615)
T ss_dssp TCCHHHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT
T ss_pred hhhHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC
Confidence 33444554 57899999886655556666666765 444444322 111 2 2344667664 4
Q ss_pred CCEEEEcc-------------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 506 LSCTYTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 506 I~vTlI~D-------------------sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.++.+.. ..+..++..+|.||.+.|..- --+.+..+|..+++|++-++
T Consensus 396 V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~---------tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 396 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp CEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGG---------GTHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHH---------HHHHHHHHHHHcCCeEEEEE
Confidence 66666542 124556789999998887553 23578889999999999764
No 356
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.43 E-value=98 Score=29.94 Aligned_cols=106 Identities=9% Similarity=-0.030 Sum_probs=54.2
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC----c-hHHHHHHHHHhCCCCEEEEc----ch-HHHHHhhhccEEE
Q 006164 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----H-EGKLLLRRLVRKGLSCTYTH----IN-AISYIIHEVTRVF 527 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~----~-EG~~La~eL~~~GI~vTlI~----Ds-Av~~iM~~Vd~Vi 527 (658)
++-.++++-+...|.+-.+.-..-+|.++.+.-. . -...+.+.|.+.|+++..+. +. .....+.++|.|+
T Consensus 5 l~l~s~~~~~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 5 LFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIY 84 (206)
T ss_dssp EEEESCGGGCHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEE
T ss_pred eEEeecccchHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEE
Confidence 5556666666565654422112235555543221 1 23556688999999988873 22 2334567888888
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++-=.-+.=...+.+.|...+=.-+-..|+|++=.|
T Consensus 85 l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 85 VTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp ECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred ECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 762111100011223333332222223589999544
No 357
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.42 E-value=2.9e+02 Score=22.21 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=42.0
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh---C
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~---~ 555 (658)
+|.++|..+.. ...+...|...|+.+....+.. +.++-. ..|.||+..+ +.+. -|.-.+..+-+. .
T Consensus 3 ~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~ 74 (124)
T 1mb3_A 3 KVLIVEDNELN-MKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDLA 74 (124)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTTT
T ss_pred EEEEEcCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCcccc
Confidence 57777766643 3344566777888777655432 222222 4788888653 2322 244334444432 3
Q ss_pred CCCeEeeccc
Q 006164 556 HIPVLVCCEA 565 (658)
Q Consensus 556 ~VPVyV~aet 565 (658)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (124)
T 1mb3_A 75 HIPVVAVTAF 84 (124)
T ss_dssp TSCEEEEC--
T ss_pred CCcEEEEECC
Confidence 7899998764
No 358
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.38 E-value=2.8e+02 Score=25.15 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=47.3
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEE-EEcch--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHh
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-lI~Ds--Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~ 554 (658)
...+|+|+|..|.. ...+...|...|+.+. ...+. ++..+-. ..|.||+..+- .+. -|.-.+..+.+.
T Consensus 12 m~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~--p~~-----~g~~~~~~l~~~ 83 (205)
T 1s8n_A 12 VPRRVLIAEDEALI-RMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKM--PRR-----DGIDAASEIASK 83 (205)
T ss_dssp CCCEEEEECSSHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--SSS-----CHHHHHHHHHHT
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCC--CCC-----ChHHHHHHHHhc
Confidence 34688888887754 2334466777898877 44433 2222222 57888886432 222 244445555555
Q ss_pred CCCCeEeecccc
Q 006164 555 FHIPVLVCCEAY 566 (658)
Q Consensus 555 ~~VPVyV~aety 566 (658)
+..||++++...
T Consensus 84 ~~~pii~lt~~~ 95 (205)
T 1s8n_A 84 RIAPIVVLTAFS 95 (205)
T ss_dssp TCSCEEEEEEGG
T ss_pred CCCCEEEEecCC
Confidence 667999987644
No 359
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=23.27 E-value=1.4e+02 Score=30.33 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=56.7
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEccee---
Q 006164 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS--- 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAda--- 532 (658)
.|..+|.+......+... ...++|+ |++..+.....+++..+.+.|+.+....|-.-..--+++|.|++..-.
T Consensus 4 rvgiiG~G~~~~~~~~~l---~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 80 (337)
T 3ip3_A 4 KICVIGSSGHFRYALEGL---DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337)
T ss_dssp EEEEECSSSCHHHHHTTC---CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred EEEEEccchhHHHHHHhc---CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence 455666543332223222 3456655 566665334455666666678866655543222222468888885321
Q ss_pred ------EecCC--------CeecccchHHHHHHHHhCCCCe-Eeecccccccccc
Q 006164 533 ------VLSNG--------TVCSRVGTACVAMVAYGFHIPV-LVCCEAYKFHERV 572 (658)
Q Consensus 533 ------VlaNG--------~VvNKiGT~~lAl~Ak~~~VPV-yV~aetyKf~~~~ 572 (658)
.+..| -..+.--...+.-+|+.+++.+ +.++-.+.|++.+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~ 135 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHF 135 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHH
Confidence 12222 1223334445566677777773 2334455555443
No 360
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=23.23 E-value=2.5e+02 Score=28.26 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=14.5
Q ss_pred HHHHHHhCCCCeEeecccc
Q 006164 548 VAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 548 lAl~Ak~~~VPVyV~aety 566 (658)
..++|+..+||+++....+
T Consensus 143 ~~~aa~~~giP~v~~~~~~ 161 (412)
T 3otg_A 143 AGLAALKAGIPTICHGVGR 161 (412)
T ss_dssp HHHHHHHHTCCEEEECCSC
T ss_pred HHHHHHHcCCCEEEecccc
Confidence 4578899999998875543
No 361
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.22 E-value=5.6e+02 Score=27.81 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCCEEEEcch---H
Q 006164 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHIN---A 515 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vTlI~Ds---A 515 (658)
..+.|..+ ..++ .|..|+.++....+..+.+-+.+.|. +|+.+-+.-..+. .+-.+++ .|..+.++.|. .
T Consensus 319 ~~~al~~~-~~~l-~GKrv~i~~~~~~~~~l~~~L~ElGm--evv~~gt~~~~~~d~~~~~~~--l~~~~~i~~d~d~~e 392 (483)
T 3pdi_A 319 VRAALEPW-RARL-EGKRVLLYTGGVKSWSVVSALQDLGM--KVVATGTKKSTEEDKARIREL--MGDDVKMLDEGNARV 392 (483)
T ss_dssp HHHHHHHH-HHHH-TTCEEEEECSSSCHHHHHHHHHHHTC--EEEEECBSSSCHHHHHHHHHH--SCSSCCBCCSCSHHH
T ss_pred HHHHHHHH-HHHh-cCCEEEEECCCchHHHHHHHHHHCCC--EEEEEecCCCCHHHHHHHHHh--cCCCCEEEeCCCHHH
Confidence 33444443 3444 47788888766433333333445566 4555444332221 1112223 35555556553 3
Q ss_pred HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 516 ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 516 v~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+...+. ++|.+|-|. + ---+|+..+||++...
T Consensus 393 l~~~i~~~~pDL~ig~~---------------~-~~~~a~k~gIP~~~~~ 426 (483)
T 3pdi_A 393 LLKTVDEYQADILIAGG---------------R-NMYTALKGRVPFLDIN 426 (483)
T ss_dssp HHHHHHHTTCSEEECCG---------------G-GHHHHHHTTCCBCCCC
T ss_pred HHHHHHhcCCCEEEECC---------------c-hhHHHHHcCCCEEEec
Confidence 334443 466664321 1 1245888999998654
No 362
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=23.05 E-value=87 Score=30.57 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=21.0
Q ss_pred cccchHHHHHHHHhCCCCeEeecccc
Q 006164 541 SRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
|-.||..+.-+|+.++++-+|.+-+.
T Consensus 95 n~~~~~~ll~a~~~~~v~~~v~~SS~ 120 (321)
T 3vps_A 95 NVDSGRHLLALCTSVGVPKVVVGSTC 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecCH
Confidence 67899999999999998777765543
No 363
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=22.94 E-value=2.1e+02 Score=27.94 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=46.7
Q ss_pred CCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhh--ccEEEEcce
Q 006164 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGAS 531 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~--Vd~VivGAd 531 (658)
+.+||..|-+.-+..-| +.+.++| .+|+++.-++...+ -+.+-+.....+..++.. +|.||--|-
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRARPK----------FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCCCCC----------eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 35788888776554433 3444444 67777753222111 122222222344455554 788876654
Q ss_pred eEecC--------CCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 532 SVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 532 aVlaN--------G~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
....+ ---+|-.||..+.-+|+.+++.|+.+.-
T Consensus 70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 110 (315)
T 2ydy_A 70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISS 110 (315)
T ss_dssp ------------------CHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEch
Confidence 32211 1124788999999999988886655543
No 364
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.90 E-value=2.5e+02 Score=25.38 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=44.6
Q ss_pred eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHH-hC
Q 006164 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-~~ 555 (658)
..+|+|+|..|.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+ ..
T Consensus 4 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSV-REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGM-----SGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSS-----CHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHH-HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 3477888877654 2334456677788877555432222 222 4688887543 3332 24333444433 34
Q ss_pred CCCeEeecccc
Q 006164 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
++||++++...
T Consensus 76 ~~~ii~ls~~~ 86 (208)
T 1yio_A 76 GIPIVFITAHG 86 (208)
T ss_dssp CCCEEEEESCT
T ss_pred CCCEEEEeCCC
Confidence 79999987644
No 365
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=22.76 E-value=2.5e+02 Score=29.16 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=60.9
Q ss_pred CCEEEeeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC----CCCEEEE----cch-HHHHHh--hh
Q 006164 455 GDVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK----GLSCTYT----HIN-AISYII--HE 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~----GI~vTlI----~Ds-Av~~iM--~~ 522 (658)
|.+||..|-+.-+..-|. .+.+.| ..+|++++-.+ ..-..+..+|.+. +..++++ .|. .+..++ .+
T Consensus 35 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 112 (399)
T 3nzo_A 35 QSRFLVLGGAGSIGQAVTKEIFKRN-PQKLHVVDISE-NNMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQ 112 (399)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTC-CSEEEEECSCH-HHHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCC
T ss_pred CCEEEEEcCChHHHHHHHHHHHHCC-CCEEEEEECCc-chHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCC
Confidence 678888887655543333 344444 24677776432 2223344555543 2345554 232 234444 36
Q ss_pred ccEEEEcceeEec----C------CCeecccchHHHHHHHHhCCCCeEeeccc
Q 006164 523 VTRVFLGASSVLS----N------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 523 Vd~VivGAdaVla----N------G~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+|.||--|-.... | .--.|-.||..++-+|+.+++.-+|...+
T Consensus 113 ~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv~r~V~iSS 165 (399)
T 3nzo_A 113 YDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVST 165 (399)
T ss_dssp CSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 8887755422110 0 11257789999999999999876666554
No 366
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=22.72 E-value=1.2e+02 Score=29.70 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=13.9
Q ss_pred cccchHHHHHHHHhCCCCe
Q 006164 541 SRVGTACVAMVAYGFHIPV 559 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPV 559 (658)
|--||..++-+++..+++.
T Consensus 82 ~v~~t~~l~~~~~~~~~~~ 100 (298)
T 4b4o_A 82 RLETTQLLAKAITKAPQPP 100 (298)
T ss_dssp HHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 4568888888888776653
No 367
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=22.69 E-value=2.7e+02 Score=27.44 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=33.8
Q ss_pred ccCCCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 452 IRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
++.|++||.+|-+..+. .++..|+..|- +|+++++.+.. .+++ .+.|....+-
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga--~Vi~~~~~~~~--~~~~---~~~ga~~~~~ 176 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEK--LALP---LALGAEEAAT 176 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGG--SHHH---HHTTCSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHH---HhcCCCEEEE
Confidence 77899999999865553 33444555554 89988876543 2334 3457765543
No 368
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=22.58 E-value=6e+02 Score=27.86 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcc--CCCEEEeeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCch-HHHHHHHHHhCCCCEEE
Q 006164 439 LADRVIVKHAVTKIR--DGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHE-GKLLLRRLVRKGLSCTY 510 (658)
Q Consensus 439 ~a~~~Ia~~a~~~I~--dgdvILT~g~S-----saV~~vL~~A~e~gk~f~ViV~ESRP~~E-G~~La~eL~~~GI~vTl 510 (658)
.|-..+++...+++. .+..|+.+|-+ -.+ -+-+++++.|.+.+||++... ..+ .+.-...|.+.|+++.
T Consensus 34 ~Ag~a~a~~i~~~~~~~~~~~v~VlcG~GNNGGDGl-v~AR~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~- 110 (502)
T 3rss_A 34 RAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGF-VVARNLLGVVKDVLVVFLGKK-KTPDCEYNYGLYKKFGGKVV- 110 (502)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHH-HHHHHHTTTSSEEEEEECCSS-CCHHHHHHHHHHHHTTCCEE-
T ss_pred HHHHHHHHHHHHhcCccCCCEEEEEECCCCCHHHHH-HHHHHHHHCCCeEEEEEECCC-CCHHHHHHHHHHHhCCCcee-
Confidence 355556666665554 35677777542 122 233666667887788877544 332 3333477888999875
Q ss_pred EcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHHhCCCCeEe
Q 006164 511 THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLV 561 (658)
Q Consensus 511 I~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl-~Ak~~~VPVyV 561 (658)
. ......+...|.|| |+++--|--=.--|-+.-.+ ..+..+.||+-
T Consensus 111 -~-~~~~~~~~~~dliV---DalfG~Gl~~~l~~~~~~~i~~iN~~~~~vvA 157 (502)
T 3rss_A 111 -E-QFEPSILNEFDVVV---DAIFGTGLRGEITGEYAEIINLVNKSGKVVVS 157 (502)
T ss_dssp -S-CCCGGGGGGCSEEE---EESCSTTCCSCCCHHHHHHHHHHHTTCCEEEE
T ss_pred -c-ccccccCCCCCEEE---EeCccCCCCCCCcHHHHHHHHHHHcCCCCEEE
Confidence 1 11112245677665 77776653222233333222 23455667653
No 369
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=22.58 E-value=3.5e+02 Score=27.39 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=54.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh-----
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 521 (658)
.+++|.|-+.++..+++...+.| -+|++.+ |.+.+...+ +...|..+..+.. ..+-..+.
T Consensus 103 ~i~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 103 SAIATPGGTGAIRSAIFSYLDEG--DPLICHD--YYWAPYRKI--CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp EEEEESHHHHHHHHHHHHHCCSS--CEEEEES--SCCTHHHHH--HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEEcCccHHHHHHHHHHhcCCC--CEEEECC--CCcccHHHH--HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc
Confidence 56777777777766665554334 3566544 566554433 3346777777652 12333333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHH------hCCCCeEe
Q 006164 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VivGAda-VlaNG~VvNKiGT~~lAl~Ak------~~~VPVyV 561 (658)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 177 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 223 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIV 223 (413)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Confidence 23323332221 133466666655566677777 78876665
No 370
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=22.50 E-value=2e+02 Score=29.41 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=40.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeEEEEe-CCCCCchHHHHHHHHHhCCCCEEEEcc---------hHHHHHhh--hc
Q 006164 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~ViV~-ESRP~~EG~~La~eL~~~GI~vTlI~D---------sAv~~iM~--~V 523 (658)
.||.-|+++.++.+|. +++.|. ..+|.++ -.+|...+ + -.+.|||+.+++. ..+...++ ++
T Consensus 94 ~vl~Sg~g~~l~~ll~-~~~~g~l~~~i~~Visn~~~~~~--~---A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 167 (286)
T 3n0v_A 94 VIMVSKADHCLNDLLY-RQRIGQLGMDVVAVVSNHPDLEP--L---AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGA 167 (286)
T ss_dssp EEEESSCCHHHHHHHH-HHHTTSSCCEEEEEEESSSTTHH--H---HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHH-HHHCCCCCcEEEEEEeCcHHHHH--H---HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCC
Confidence 4677788899976554 455553 3444433 33555432 2 3468999998752 23444454 57
Q ss_pred cEEEEcc
Q 006164 524 TRVFLGA 530 (658)
Q Consensus 524 d~VivGA 530 (658)
|.+++-.
T Consensus 168 Dlivla~ 174 (286)
T 3n0v_A 168 ELVILAR 174 (286)
T ss_dssp SEEEESS
T ss_pred CEEEecc
Confidence 8877654
No 371
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=22.48 E-value=3e+02 Score=22.31 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=44.9
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCC-CEEEEcch--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI-~vTlI~Ds--Av~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
++.++|+++|..+.. ...+...|...|+ .+....+. ++..+.. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 2 ~~~~~ilivdd~~~~-~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~ 73 (128)
T 1jbe_A 2 DKELKFLVVDDFSTM-RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRA 73 (128)
T ss_dssp CTTCCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC
T ss_pred CCccEEEEECCCHHH-HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 345678888887654 3344466777888 56555543 2222222 4788887543 3322 24333334433
Q ss_pred ---hCCCCeEeeccc
Q 006164 554 ---GFHIPVLVCCEA 565 (658)
Q Consensus 554 ---~~~VPVyV~aet 565 (658)
...+|+++++..
T Consensus 74 ~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 74 XXAMSALPVLMVTAE 88 (128)
T ss_dssp --CCTTCCEEEEESS
T ss_pred hcccCCCcEEEEecC
Confidence 236899988754
No 372
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=22.39 E-value=6.4e+02 Score=26.97 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--------cC----CeeEEEEeCCCCCchHHHHHHHHHhCCC---CEEEEc-c-----
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL---SCTYTH-I----- 513 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--------~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI---~vTlI~-D----- 513 (658)
+..|+|-|-+.++...|..+.+ .| .+..||+.+.--. . +.+-+.-.|+ .+.++. |
T Consensus 155 ~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~--s--~~~~~~~~g~g~~~~~~v~~d~~~~~ 230 (511)
T 3vp6_A 155 GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHY--S--IKKAGAALGFGTDNVILIKCNERGKI 230 (511)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCT--H--HHHHHHHTTSCGGGEEEECBCTTSCB
T ss_pred CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchH--H--HHHHHHHcCCCCCcEEEeecCCCCcc
Confidence 4567777766665555554433 23 3567777653221 1 2233334555 788875 2
Q ss_pred --hHHHHHhhhc------cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 514 --NAISYIIHEV------TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 514 --sAv~~iM~~V------d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..+-..+.+- .++|+....-...|.+ ..+ -.|+-+|+.|++.|+|=
T Consensus 231 d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~v-d~l--~~I~~ia~~~~~~lhvD 284 (511)
T 3vp6_A 231 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAF-DPI--QEIADICEKYNLWLHVD 284 (511)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCB-CCH--HHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccc-ccH--HHHHHHHHHcCCEEEEE
Confidence 2344444432 4455544333344544 333 55788899999998873
No 373
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=22.30 E-value=2.8e+02 Score=27.29 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch
Q 006164 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 464 SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds 514 (658)
|.-.+..+.+|++ ...++-|=|.=| .||.+.+++|.+.||+|.++..=
T Consensus 69 a~d~e~~i~eA~~l~~~~~nv~IKIP~T---~eGl~A~~~L~~~GI~vN~TliF 119 (223)
T 1wx0_A 69 ALEAEAMVAEGRRLAAIHPNIVVKLPTT---EEGLKACKRLSAEGIKVNMTLIF 119 (223)
T ss_dssp CSSHHHHHHHHHHHHHHCTTEEEEEESS---HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHhhCCCEEEEeCCC---HHHHHHHHHHHHCCCcEEEEEeC
Confidence 4344555666553 344444445444 59999999999999988666543
No 374
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.27 E-value=2.7e+02 Score=23.09 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=47.4
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH--
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-- 553 (658)
...+|+|+|..+.. ...+...|.+.|+.|....+..-+ ..+. ..|.||+..+ +.+ .-|.-.+..+-+
T Consensus 5 ~~~~iLivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 5 PRPRILICEDDPDI-ARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPD-----QDGVSLIRALRRDS 76 (140)
T ss_dssp CCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSS-----SCHHHHHHHHHTSG
T ss_pred CCCCEEEEcCCHHH-HHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCC-----CCHHHHHHHHHhCc
Confidence 34678888877654 334456677788887766654322 2222 5788888654 222 224444444443
Q ss_pred -hCCCCeEeecccc
Q 006164 554 -GFHIPVLVCCEAY 566 (658)
Q Consensus 554 -~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 77 ~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 77 RTRDLAIVVVSANA 90 (140)
T ss_dssp GGTTCEEEEECTTH
T ss_pred ccCCCCEEEEecCC
Confidence 3589999998654
No 375
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.23 E-value=3.2e+02 Score=22.29 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=31.7
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcce
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGAS 531 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAd 531 (658)
...+|+|+|..+.. ...+...|.+.|..|....+..-+ ..+. ..|.||+..+
T Consensus 5 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAM-AAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHH-HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 34678888877654 334456777788888766554322 2222 5788888654
No 376
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.18 E-value=2.6e+02 Score=22.37 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=42.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH-hCCC
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GFHI 557 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-~~~V 557 (658)
+|.++|..+.. ...+...|...|..|....+..-+ ..+. ..|.||+..+ +.++ -|.-.+..+-+ ...+
T Consensus 2 ~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALL-RHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHH-HHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 56777766543 234446677788887766654322 2222 4788888543 3322 13323333332 3579
Q ss_pred CeEeeccc
Q 006164 558 PVLVCCEA 565 (658)
Q Consensus 558 PVyV~aet 565 (658)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 2pl1_A 74 PILVLTAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99998754
No 377
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.08 E-value=4.9e+02 Score=24.39 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=60.5
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE-cc----hHHHHHhh------
Q 006164 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (658)
.+.+||..|-+.-+... .+.+.++| .+|+++.-++ .....+..+|...|..+.++ .| ..+..++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDE-AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46788888887666433 34445555 5788776443 23345567777777777765 33 23444444
Q ss_pred -hccEEEEcceeEecCCC-------------eecccchHHHHHHHHh----CCCCeEeec
Q 006164 522 -EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYG----FHIPVLVCC 563 (658)
Q Consensus 522 -~Vd~VivGAdaVlaNG~-------------VvNKiGT~~lAl~Ak~----~~VPVyV~a 563 (658)
.+|.||--|-.....+. -+|-.|++.+.-.+.. .+...+|..
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 148 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAI 148 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 57888776642221221 1366788777665543 244445443
No 378
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=22.04 E-value=2.8e+02 Score=28.90 Aligned_cols=101 Identities=10% Similarity=0.132 Sum_probs=52.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHH--HHHHhCCCCE-----EEEcc--------hHHHH
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLL--RRLVRKGLSC-----TYTHI--------NAISY 518 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La--~eL~~~GI~v-----TlI~D--------sAv~~ 518 (658)
+.+++|-|.+..+..++..+.+.+. +.+|++.+ |.+-+.... ..+...|+.+ .++.. ..+-.
T Consensus 129 ~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~--~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~ 206 (465)
T 3e9k_A 129 KEIALMNALTVNLHLLMLSFFKPTPKRYKILLEA--KAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILE 206 (465)
T ss_dssp GGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEET--TCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHhccccCCCCEEEEcC--CcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHH
Confidence 4677777777777655555433332 33455533 445444332 3455578763 23321 23444
Q ss_pred Hhh----hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 519 IIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 519 iM~----~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+. ++ ++|+-..-=...|.+.. + ..|+-+|+.||+.|++
T Consensus 207 ~i~~~~~~~-~lv~~~~~~n~tG~~~~-l--~~i~~la~~~g~~vi~ 249 (465)
T 3e9k_A 207 VIEKEGDSI-AVILFSGVHFYTGQHFN-I--PAITKAGQAKGCYVGF 249 (465)
T ss_dssp HHHHHGGGE-EEEEEESBCTTTCBBCC-H--HHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCe-EEEEEeCcccCcceeec-H--HHHHHHHHHcCCEEEE
Confidence 443 33 33333332233454443 2 5677789999998876
No 379
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.96 E-value=2.2e+02 Score=23.65 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=47.2
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHh-CCCC-EEEEcchHH-HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVR-KGLS-CTYTHINAI-SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~-~GI~-vTlI~DsAv-~~iM~--~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
...+|+|+|..+.. ...+...|.. .|+. +....+..- -..+. ..|.||+..+- .+ .-|.-.+..+.+
T Consensus 7 ~~~~iLivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEF-ADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHHT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHHh
Confidence 45788888887754 3345567777 8999 666655422 22233 47888887543 22 224333444443
Q ss_pred ---hCCCCeEeecccc
Q 006164 554 ---GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ---~~~VPVyV~aety 566 (658)
..++|+++++...
T Consensus 79 ~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 79 TPATANIIVIAMTGAL 94 (143)
T ss_dssp STTTTTSEEEEEESSC
T ss_pred CccccCCcEEEEeCCC
Confidence 3579999987654
No 380
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.95 E-value=1.6e+02 Score=31.84 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=53.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|..||..|.+.+-...++.+.+.|-. |+|++..... . ..+|.+.| .++++...--...+..++.||.-
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~--V~vi~~~~~~---~-~~~l~~~~-~i~~~~~~~~~~~l~~~~lVi~a---- 79 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGAR--LTVNALTFIP---Q-FTVWANEG-MLTLVEGPFDETLLDSCWLAIAA---- 79 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBE--EEEEESSCCH---H-HHHHHTTT-SCEEEESSCCGGGGTTCSEEEEC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCE--EEEEcCCCCH---H-HHHHHhcC-CEEEEECCCCccccCCccEEEEc----
Confidence 367899999987766667777777765 4444443222 1 23444322 23444322111123345555443
Q ss_pred ecCCCe-ecccchHHHHHHHHhCCCCeEeecc
Q 006164 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 laNG~V-vNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
-|+- + ...++..|+.++|||-|+.+
T Consensus 80 --t~~~~~----n~~i~~~a~~~~i~vn~~d~ 105 (457)
T 1pjq_A 80 --TDDDTV----NQRVSDAAESRRIFCNVVDA 105 (457)
T ss_dssp --CSCHHH----HHHHHHHHHHTTCEEEETTC
T ss_pred --CCCHHH----HHHHHHHHHHcCCEEEECCC
Confidence 2221 2 34688899999999877654
No 381
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=21.79 E-value=1e+02 Score=29.15 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeec----ccchHHHHHHHH
Q 006164 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCS----RVGTACVAMVAY 553 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvN----KiGT~~lAl~Ak 553 (658)
+++.+|.|++- +.+ =..+.+.|.+.|+.+.++.+.. -+.++|.+|++-- +..++. ..+...+-.-+.
T Consensus 18 ~~~~~I~ii~~-~~~-~~~~~~~l~~~g~~~~~~~~~~---~l~~~d~iil~GG----~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 18 GSHMKIGVLGV-QGD-VREHVEALHKLGVETLIVKLPE---QLDMVDGLILPGG----ESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp --CCEEEEECS-SSC-HHHHHHHHHHTTCEEEEECSGG---GGGGCSEEEECSS----CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcEEEEEEC-CCc-hHHHHHHHHHCCCEEEEeCChH---HHhhCCEEEECCC----cHHHHHhhhhhhhHHHHHHHHH
Confidence 34567777764 332 1234577888999998886542 1457787766421 001111 111111222233
Q ss_pred hCCCCeEeeccccc
Q 006164 554 GFHIPVLVCCEAYK 567 (658)
Q Consensus 554 ~~~VPVyV~aetyK 567 (658)
..++|++-+|--+-
T Consensus 89 ~~g~PilGIC~G~Q 102 (208)
T 2iss_D 89 NNGLPVFATCAGVI 102 (208)
T ss_dssp HTTCCEEEETHHHH
T ss_pred HCCCeEEEECHHHH
Confidence 57999998876543
No 382
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=21.79 E-value=2.3e+02 Score=27.14 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=50.7
Q ss_pred HHhccC-CCEEEeeCChHHHHHHHHHHHHcC---CeeEEEEeC---CCC----CchHHHHHHHHHh-CCCCEEEEcchHH
Q 006164 449 VTKIRD-GDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVD---SRP----KHEGKLLLRRLVR-KGLSCTYTHINAI 516 (658)
Q Consensus 449 ~~~I~d-gdvILT~g~SsaV~~vL~~A~e~g---k~f~ViV~E---SRP----~~EG~~La~eL~~-~GI~vTlI~DsAv 516 (658)
.+.|.+ ++ ++-.+++++...++....+.+ .+.+|+-++ +-| ...-..+.+.|.+ .+++..++.+...
T Consensus 22 ~~~i~~~~~-~i~ls~G~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~~l~~~~~~~~~~~~~~~~ 100 (234)
T 2ri0_A 22 EEEITFGAK-TLGLATGSTPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFKKSYLPNGLA 100 (234)
T ss_dssp HHHHHTTCC-EEEECCSSTTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHHHTTTTSCCSEEECCCTTC
T ss_pred HHHHHhCCC-EEEEcCCCCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHHHHhccCCCcHhhcCCCCC
Confidence 334443 46 777788877767776665422 356666655 233 2222334456554 4888888765421
Q ss_pred ----------HHHhh--hccEEEEcceeEecCCCeec
Q 006164 517 ----------SYIIH--EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 517 ----------~~iM~--~Vd~VivGAdaVlaNG~VvN 541 (658)
...+. .+|.+|+|-= .||.+..
T Consensus 101 ~~~~~~~~~y~~~i~~~~~Dl~llGiG---~dgh~a~ 134 (234)
T 2ri0_A 101 ADLAKETEYYDQILAQYPIDLQILGIG---RNAHIGF 134 (234)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEECCC---TTSCBTT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEccC---CCCCchh
Confidence 11232 5899999954 6665543
No 383
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=21.78 E-value=39 Score=36.22 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=41.4
Q ss_pred chHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeeccccc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
..|.++.-++.. +-..++.+|.||.|=-++-. ....----+.+|-+||. +|||+++|.+..
T Consensus 260 ~~G~~~v~~~~~------------l~~~l~~ADLVITGEG~~D~--QT~~GK~p~gVa~~A~~-~~PviaiaG~~~ 320 (371)
T 1to6_A 260 VSGIDTCLDLID------------FDKKVSDVDLVIVGEGRLDR--QSLAGKAPIGVAKRTPV-GVPVVAICGSLV 320 (371)
T ss_dssp EEHHHHHHHHTT------------HHHHTTTCSEEEECCSEECS--TTTTTCHHHHHHTTSCT-TCCEEEEESEEC
T ss_pred ccHHHHHHHhhC------------HHHHhcCCCEEEECCCCCCC--CCCCCcHHHHHHHHHhc-CCCEEEEeCCCC
Confidence 347777655443 34567789999999866632 23332334667778999 999999998663
No 384
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=21.76 E-value=2e+02 Score=28.72 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch----------HHHHHhh-hc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-EV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~V 523 (658)
..+++|.|-+.++..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+... .+-..+. ++
T Consensus 82 ~~v~~~~g~~~a~~~~~~~l~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 155 (375)
T 3op7_A 82 EQILQTNGATGANLLVLYSLIEPG--DHVISL--YPTYQQLY--DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT 155 (375)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESSCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTC
T ss_pred hhEEEcCChHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCC
Confidence 467777777777766666554333 345553 35554433 2345678777666421 2222332 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEe
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++- .---..|.++..---..++-+|+.|++.+++
T Consensus 156 ~~v~~~-~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 156 KMICIN-NANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp CEEEEE-SSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred eEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 555543 2223446555544456677789999998886
No 385
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=21.71 E-value=2.5e+02 Score=28.63 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHcCCeeEEEEeCCCCCchHHHHHHH-HHhCCCCEEEEcchHH---HHHhh--hccEEEEcceeEe
Q 006164 474 AHELGKQFRVVIVDSRPKHEGKLLLRR-LVRKGLSCTYTHINAI---SYIIH--EVTRVFLGASSVL 534 (658)
Q Consensus 474 A~e~gk~f~ViV~ESRP~~EG~~La~e-L~~~GI~vTlI~DsAv---~~iM~--~Vd~VivGAdaVl 534 (658)
|.+.+..|.||+ --.|-.-|-.-+++ |.+.||||.+|.|.-. --.|+ .--.+|+-+|.+.
T Consensus 60 ~~~~~pDfvI~i-sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~DpMI 125 (283)
T 1qv9_A 60 AEDFEPDFIVYG-GPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDAML 125 (283)
T ss_dssp HHHHCCSEEEEE-CSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTSCCC
T ss_pred hhhcCCCEEEEE-CCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEEEEecCccc
Confidence 345567776554 45667789888855 6689999999999642 12233 2445665555543
No 386
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=21.69 E-value=2.3e+02 Score=27.65 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=54.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHH----Hh--hhccEEEE
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY----II--HEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~----iM--~~Vd~Viv 528 (658)
..+++|.|-+.++..+++.+.+.| -+|++.+ |.+-|..+...+...|+.+.++....-+. .+ +++..|++
T Consensus 52 ~~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~ 127 (352)
T 1iug_A 52 EVLILTGSGTLAMEALVKNLFAPG--ERVLVPV--YGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLL 127 (352)
T ss_dssp EEEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEE
T ss_pred ceEEEcCchHHHHHHHHHhccCCC--CeEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEE
Confidence 356777777777766666554333 3566643 44444443344566899888775211000 01 23444444
Q ss_pred cceeEecCCCeecccchHHHHHHHHhC--CCCeEe
Q 006164 529 GASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 529 GAdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
.+--...|.++. --.++-+|+.| ++.+++
T Consensus 128 -~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~ 158 (352)
T 1iug_A 128 -VHSETSTGALAD---LPALARAFKEKNPEGLVGA 158 (352)
T ss_dssp -ESEETTTTEECC---HHHHHHHHHHHCTTCEEEE
T ss_pred -EEecCCcceecC---HHHHHHHHHhhCCCCEEEE
Confidence 232233465554 24677788998 887765
No 387
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=21.57 E-value=1.5e+02 Score=29.13 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=52.0
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCC--EEEEcchHHHHHhh--h
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLS--CTYTHINAISYIIH--E 522 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~--vTlI~DsAv~~iM~--~ 522 (658)
..+++..|++||=.|.++-...+ . +...+..-+|+.+|-.|.. ..++ ..+...|+. ++++.-+....+-. .
T Consensus 9 l~~~v~~g~~VlDIGtGsG~l~i-~-la~~~~~~~V~avDi~~~a--l~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~ 84 (225)
T 3kr9_A 9 VASFVSQGAILLDVGSDHAYLPI-E-LVERGQIKSAIAGEVVEGP--YQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQ 84 (225)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHH-H-HHHTTSEEEEEEEESSHHH--HHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHhCCCCCEEEEeCCCcHHHHH-H-HHHhCCCCEEEEEECCHHH--HHHHHHHHHHcCCCceEEEEECchhhhcccCcC
Confidence 45688899999999998876443 2 3345667799999977643 3455 567778884 77776555433322 4
Q ss_pred ccEEEE
Q 006164 523 VTRVFL 528 (658)
Q Consensus 523 Vd~Viv 528 (658)
+|.|++
T Consensus 85 ~D~Ivi 90 (225)
T 3kr9_A 85 VSVITI 90 (225)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887775
No 388
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=21.55 E-value=1.5e+02 Score=29.26 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=65.4
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC--CEEEEcchHHHHHhh--h
Q 006164 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYIIH--E 522 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI--~vTlI~DsAv~~iM~--~ 522 (658)
..+++..|++||=.|.++....+. +.+.|..-+|+.+|-.|.. .+.| +.+...|+ .++++.-+....+-+ .
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~--la~~~~~~~V~AvDi~~~a--l~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~ 90 (230)
T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIF--LLQMGYCDFAIAGEVVNGP--YQSALKNVSEHGLTSKIDVRLANGLSAFEEADN 90 (230)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHH--HHHTTCEEEEEEEESSHHH--HHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred HHHhCCCCCEEEEECCchHHHHHH--HHHhCCCCEEEEEECCHHH--HHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence 456888999999999998764432 3345777799999977643 3445 56777887 378887655554444 4
Q ss_pred ccEEEEcceeEecCCCeecccchH-HHHHHHHh----CCCCeEeeccccc
Q 006164 523 VTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYG----FHIPVLVCCEAYK 567 (658)
Q Consensus 523 Vd~VivGAdaVlaNG~VvNKiGT~-~lAl~Ak~----~~VPVyV~aetyK 567 (658)
+|.|+++ -+|.. ..-++... .+...+|+++-..
T Consensus 91 ~D~Ivia------------GmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 91 IDTITIC------------GMGGRLIADILNNDIDKLQHVKTLVLQPNNR 128 (230)
T ss_dssp CCEEEEE------------EECHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred cCEEEEe------------CCchHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence 7887642 23332 22233322 3456788887543
No 389
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.48 E-value=2.5e+02 Score=23.30 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=46.6
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHH--
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak-- 553 (658)
...+|+|+|..+.. ...+...|...|+.|....+.. +..+-. ..|.||+..+- .+ .-|.-.+..+.+
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~~ 77 (142)
T 3cg4_A 6 HKGDVMIVDDDAHV-RIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PG-----MDGWDTIRAILDNS 77 (142)
T ss_dssp CCCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SS-----SCHHHHHHHHHHTT
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhc
Confidence 45688888877643 3344567777888877665532 222222 47888887543 22 224334444444
Q ss_pred -hCCCCeEeeccc
Q 006164 554 -GFHIPVLVCCEA 565 (658)
Q Consensus 554 -~~~VPVyV~aet 565 (658)
..++|+++++..
T Consensus 78 ~~~~~pii~~s~~ 90 (142)
T 3cg4_A 78 LEQGIAIVMLTAK 90 (142)
T ss_dssp CCTTEEEEEEECT
T ss_pred ccCCCCEEEEECC
Confidence 347899998764
No 390
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=21.43 E-value=6.4e+02 Score=25.47 Aligned_cols=20 Identities=15% Similarity=0.517 Sum_probs=13.8
Q ss_pred CCEEEeeCChHHHHHHHHHH
Q 006164 455 GDVLLTYGSSSAVEMILQHA 474 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A 474 (658)
..+++|.|.+.++..++..+
T Consensus 79 ~~v~~~~g~t~a~~~~~~~~ 98 (432)
T 3a9z_A 79 QDIIFTSGGTESNNLVIHST 98 (432)
T ss_dssp GGEEEESCHHHHHHHHHHHH
T ss_pred CeEEEeCChHHHHHHHHHHH
Confidence 46788877777776666554
No 391
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=21.41 E-value=1.3e+02 Score=33.73 Aligned_cols=65 Identities=28% Similarity=0.261 Sum_probs=45.7
Q ss_pred HHHHhccCCCEEEeeCChHHHHHHHHHHHH---c----C-C---------------------------eeEEEEeCCCCC
Q 006164 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHE---L----G-K---------------------------QFRVVIVDSRPK 491 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~SsaV~~vL~~A~e---~----g-k---------------------------~f~ViV~ESRP~ 491 (658)
....+.++|.++.||+....|...|..|-- . + + .+.|+|+-+-
T Consensus 204 ~l~~~~~~g~~~~t~~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG-- 281 (676)
T 3ps9_A 204 AMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGG-- 281 (676)
T ss_dssp HHHHHEEEEEEEEESCCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEEEECCS--
T ss_pred HHHHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccccccchhhhheeccccccccccCCcccCccCCCCCEEEECCC--
Confidence 334577889999999999999888877630 0 0 0 1345554443
Q ss_pred chHHHHHHHHHhCCCCEEEEcc
Q 006164 492 HEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vTlI~D 513 (658)
.-|.-.|..|.+.|++|+++.-
T Consensus 282 iaGlsaA~~La~~G~~V~vlEk 303 (676)
T 3ps9_A 282 IASALLSLALLRRGWQVTLYCA 303 (676)
T ss_dssp HHHHHHHHHHHTTTCEEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEEeC
Confidence 2477788999999999999963
No 392
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.30 E-value=1.6e+02 Score=27.25 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCe-eEEEEeCC-----CCCchHHHHH-HHHHhCCCCEEEEcch
Q 006164 466 AVEMILQHAHELGKQ-FRVVIVDS-----RPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (658)
Q Consensus 466 aV~~vL~~A~e~gk~-f~ViV~ES-----RP~~EG~~La-~eL~~~GI~vTlI~Ds 514 (658)
+.+.+.+.|.+.|.+ ++|+|--. +....|++.+ +.|...|+.+..|.|.
T Consensus 63 aa~~~~~~a~e~Gi~~v~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~Dv 118 (137)
T 3j20_M 63 AARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDV 118 (137)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEc
Confidence 455677778887854 56666442 2245688887 8999999999999884
No 393
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=21.28 E-value=89 Score=29.95 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=45.9
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCC
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VP 558 (658)
...+|.+++....+ -..+++.|.+.|+.+.++....-..-+.++|.+||.--. .|+++.......+.-.+...++|
T Consensus 12 ~~~~i~~id~~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~---p~~~~~~~~~~~l~~~~~~~~~P 87 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW-THREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGA---PNIDEELDKLGSVGKYIDDHNYP 87 (212)
T ss_dssp CCCBEEEEEESCCT-TCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEEC---SCGGGTGGGHHHHHHHHHHCCSC
T ss_pred ccceEEEEeCCCcc-HHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCC---CCCCcccccchhHHHHHHhCCCC
Confidence 34577777765555 335678888889888888643211123347877663210 22333321222223334578999
Q ss_pred eEeecc
Q 006164 559 VLVCCE 564 (658)
Q Consensus 559 VyV~ae 564 (658)
++-+|-
T Consensus 88 iLGIC~ 93 (212)
T 2a9v_A 88 ILGICV 93 (212)
T ss_dssp EEEETH
T ss_pred EEEECh
Confidence 997764
No 394
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=21.28 E-value=5.9e+02 Score=26.04 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=49.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch---HHHHHhhh-----ccEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHE-----VTRVF 527 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~-----Vd~Vi 527 (658)
+.|++-+-+.++..+|..+. ++.-.|++. .|.+.+.. .-+...|..+..+... .+-.++.+ +.+|+
T Consensus 126 ~~i~~~sGs~a~~~al~~l~--~~gd~vl~~--~~~h~~~~--~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 126 GAIVFSTGYMANLGIISTLA--GKGEYVILD--ADSHASIY--DGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp EEEEESCHHHHHHHHHHHHS--CTTCEEEEE--TTCCHHHH--HHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred ceEEecCcHHHHHHHHHHhc--CCCCEEEEC--CcccHHHH--HHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEE
Confidence 44554444455655555443 333355553 34443332 2234467777666422 33344443 34444
Q ss_pred EcceeEec-CCCeecccchHHHHHHHHhCCCCeEe
Q 006164 528 LGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 528 vGAdaVla-NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+ +.+.. .|.+.. --.|+-+|+.|++.++|
T Consensus 200 ~--~~~~n~tG~~~~---l~~l~~l~~~~g~~li~ 229 (427)
T 2w8t_A 200 L--EGVYSMLGDIAP---LKEMVAVAKKHGAMVLV 229 (427)
T ss_dssp E--ESEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred E--cCCCCCCCCccC---HHHHHHHHHHcCCEEEE
Confidence 4 33443 454443 45677789999987776
No 395
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=21.27 E-value=4.2e+02 Score=24.68 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCCEEEEcc------hHHHHHhh--hc
Q 006164 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHI------NAISYIIH--EV 523 (658)
Q Consensus 455 gdvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vTlI~D------sAv~~iM~--~V 523 (658)
|.+.|+..... .+..+.+..++.=..|++|.+++ .++.|.+ .||+|+.+.- .-+...+. +|
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geI 83 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGT--------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKI 83 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETT--------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccH--------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCc
Confidence 44445544331 22244444443312688998875 3566777 8999999842 23555555 79
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeecccccc
Q 006164 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 524 d~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
|+||-=-|-+ |.-....-.+.+=-+|-.|+||++---.+-++
T Consensus 84 dlVInt~~pl---~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a 125 (152)
T 1b93_A 84 DVLIFFWDPL---NAVPHDPDVKALLRLATVWNIPVATNVATADF 125 (152)
T ss_dssp CEEEEECCTT---SCCTTHHHHHHHHHHHHHTTCCEESSHHHHHH
T ss_pred cEEEEcCCcc---cCCcccccHHHHHHHHHHcCCCEEeCHHHHHH
Confidence 9998533200 32222344567778899999999875544433
No 396
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=21.21 E-value=1.1e+02 Score=33.06 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
+.+||..|-+.-|...| +.+.++| .+|+++.-++.... . +..-.+......+..+|.||--|-..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~----------~--v~~d~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPG----------K--RFWDPLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTT----------C--EECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCcc----------c--eeecccchhHHhcCCCCEEEECCCCc
Confidence 57899999776554433 3444555 46777654443210 0 11111112233456778777644332
Q ss_pred ecC----CC-----eecccchHHHHHH-HHhCCCCeEeeccc
Q 006164 534 LSN----GT-----VCSRVGTACVAMV-AYGFHIPVLVCCEA 565 (658)
Q Consensus 534 laN----G~-----VvNKiGT~~lAl~-Ak~~~VPVyV~aet 565 (658)
..+ .. -+|-.||..++-+ |+..++..+|.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS 254 (516)
T 3oh8_A 213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASA 254 (516)
T ss_dssp ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 111 00 1377789988887 78888887776655
No 397
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=21.20 E-value=5e+02 Score=25.95 Aligned_cols=104 Identities=12% Similarity=0.014 Sum_probs=48.0
Q ss_pred CCEEEeeCChHHHHHHHHHHH--HcCCeeEEEEeCC-CCC-ch-HHHHH-HHHHh-----CCCCEEEEc--c-hHHHHHh
Q 006164 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDS-RPK-HE-GKLLL-RRLVR-----KGLSCTYTH--I-NAISYII 520 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ES-RP~-~E-G~~La-~eL~~-----~GI~vTlI~--D-sAv~~iM 520 (658)
..+++|.|-+.++..+|+.+. ..| -+|++.+. -+. .. ...++ ..... ...++..+. | ..+-..+
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~--~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i 182 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGR--KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAV 182 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSC--CEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHC
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCC--CeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHh
Confidence 356777777777766666542 333 35676652 221 11 11111 01010 011244442 2 2333333
Q ss_pred hhccEEEEcceeEecC-CCeecccc-hHHHHHHHHhCCCCeEe
Q 006164 521 HEVTRVFLGASSVLSN-GTVCSRVG-TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~~Vd~VivGAdaVlaN-G~VvNKiG-T~~lAl~Ak~~~VPVyV 561 (658)
..=.++|+ ...+..+ |.++..-+ --.|+-+|++|++.+++
T Consensus 183 ~~~~~~v~-~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~ 224 (395)
T 1vef_A 183 DEETAAVI-LEPVQGEGGVRPATPEFLRAAREITQEKGALLIL 224 (395)
T ss_dssp CTTEEEEE-ECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccCEEEEE-EeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 32123443 3444432 44444333 34577789999998776
No 398
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=21.19 E-value=1.8e+02 Score=30.71 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-------HHHHhCCCCEEEEcc--------hHHHHHhh-hcc
Q 006164 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-------RRLVRKGLSCTYTHI--------NAISYIIH-EVT 524 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-------~eL~~~GI~vTlI~D--------sAv~~iM~-~Vd 524 (658)
+-+.++..+|....+.| -+|++.+ .|.+.+. .+. ..|...|+.+..+.. ..+-..+. +..
T Consensus 85 sGt~Ai~~al~all~~G--D~Vl~~~-~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tk 161 (409)
T 3jzl_A 85 SGTHAISTVLFGILRPD--DELLYIT-GQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK 161 (409)
T ss_dssp SHHHHHHHHHHHHCCTT--CEEEECS-SSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEE
T ss_pred cHHHHHHHHHHHhcCCC--CEEEEeC-CCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCe
Confidence 33345545554443333 3566655 3444443 333 356678998888753 22333333 333
Q ss_pred EEEEcceeEecCCCeecccchH----HHHHHHHh--CCCCeEee
Q 006164 525 RVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLVC 562 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~----~lAl~Ak~--~~VPVyV~ 562 (658)
+|++.. +-|...|..|+. .++-+|+. |+++|+|=
T Consensus 162 lV~i~~----s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD 201 (409)
T 3jzl_A 162 MIGIQR----SRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD 201 (409)
T ss_dssp EEEEEC----SCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEEEC----CCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe
Confidence 443321 224466777764 46667888 99988873
No 399
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.18 E-value=1.4e+02 Score=25.76 Aligned_cols=65 Identities=9% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCEEEEcchHH-HHHhhhccEEEEcceeEecCCCeec--ccchHHHHHHHHhCCCCeEeec
Q 006164 497 LLRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLGASSVLSNGTVCS--RVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv-~~iM~~Vd~VivGAdaVlaNG~VvN--KiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+++.|.+.|++|+++..... ..-+.+.|.||+|+-.. +|+..- .+-.+.--+...-.++++.+++
T Consensus 19 ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty--~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 19 IAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAM--TDEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp HHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCB--TTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCcc--CCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 34566778888888754432 23456899999998653 233332 2333322222224578888776
No 400
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=21.12 E-value=2.2e+02 Score=29.05 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=61.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeE
Q 006164 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaV 533 (658)
.|+.|..+|+=..+.+++ .+...++|+|-.|.. |. .+|.+..++++++|.||+=+.++
T Consensus 140 ~g~kV~vIG~fP~i~~~~------~~~~~l~V~E~~p~~------------g~----~p~~~~~~~lp~~D~viiTgstl 197 (270)
T 3l5o_A 140 KGKKVGVVGHFPHLESLL------EPICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCASV 197 (270)
T ss_dssp TTSEEEEESCCTTHHHHH------TTTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHHH
T ss_pred CCCEEEEECCchhHHHHH------hcCCCEEEEECCCCC------------CC----CChhHHHHhhccCCEEEEEeehh
Confidence 578999999976664432 234678999988852 22 47889999999999999887766
Q ss_pred ecCCCeecccchHHHHHHHH-hCCCCeEeeccccccccc
Q 006164 534 LSNGTVCSRVGTACVAMVAY-GFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 534 laNG~VvNKiGT~~lAl~Ak-~~~VPVyV~aetyKf~~~ 571 (658)
. || |..- ++.. .....|+++.||.-+++.
T Consensus 198 v-N~-------Tl~~-lL~~~~~a~~vvl~GPStp~~P~ 227 (270)
T 3l5o_A 198 V-DK-------TLPR-LLELSRNARRITLVGPGTPLAPV 227 (270)
T ss_dssp H-HT-------CHHH-HHHHTTTSSEEEEESTTCCCCGG
T ss_pred h-cC-------CHHH-HHhhCCCCCEEEEECCCchhhHH
Confidence 5 33 3322 2222 345678888999888764
No 401
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=21.08 E-value=1.5e+02 Score=30.12 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=35.6
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc
Q 006164 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D 513 (658)
.+..|++||.+|-+.+=..++..|+..|- +||+++..+.. .+++ .+.|.+..+ .+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~--~~~~---~~lGa~~v~-~~ 227 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHK--KQDA---LSMGVKHFY-TD 227 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTT--HHHH---HHTTCSEEE-SS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHH---HhcCCCeec-CC
Confidence 56789999999975432234445555554 79998877754 2333 456877666 44
No 402
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=21.06 E-value=1.8e+02 Score=28.48 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=50.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcch--------HHHHHhhhccEEE
Q 006164 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVTRVF 527 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd~Vi 527 (658)
.+++|.|-+.++..++.... .. +++++..-.+. ..+...+...|+.+.++... .+- +-+++..|+
T Consensus 63 ~v~~~~g~t~al~~~~~~l~---~~-~~i~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~-~~~~~~~v~ 135 (362)
T 3ffr_A 63 EVLFLASATEIWERIIQNCV---EK-KSFHCVNGSFS--KRFYEFAGELGREAYKEEAAFGKGFYPADIT-VPADAEIIC 135 (362)
T ss_dssp EEEEESCHHHHHHHHHHHHC---SS-EEEEEECSHHH--HHHHHHHHHTTCEEEEEECCTTCCCCGGGCC-CCTTCCEEE
T ss_pred EEEEeCCchHHHHHHHHhcc---CC-cEEEEcCcHHH--HHHHHHHHHhCCCeEEEecCCCCCCCHHHHh-ccCCccEEE
Confidence 35666555556655444432 23 66666554332 34444556679988887532 111 112344444
Q ss_pred EcceeEecCCCeecccchHHHHHHHHhC-CCCeEee
Q 006164 528 LGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVC 562 (658)
Q Consensus 528 vGAdaVlaNG~VvNKiGT~~lAl~Ak~~-~VPVyV~ 562 (658)
+- +-=-..|.+.. --.++-+|+.| ++.|+|=
T Consensus 136 ~~-~~~nptG~~~~---l~~i~~la~~~p~~~li~D 167 (362)
T 3ffr_A 136 LT-HNETSSGVSMP---VEDINTFRDKNKDALIFVD 167 (362)
T ss_dssp EE-SEETTTTEECC---HHHHTTSGGGSTTSEEEEE
T ss_pred EE-cCCCCcceeCC---HHHHHHHHHhCCCCEEEEe
Confidence 43 22223354443 23466689999 9988773
No 403
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=21.04 E-value=81 Score=31.18 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=7.3
Q ss_pred hhccEEEEccee
Q 006164 521 HEVTRVFLGASS 532 (658)
Q Consensus 521 ~~Vd~VivGAda 532 (658)
.++|.||.+.|.
T Consensus 54 ~~~D~v~~~~~~ 65 (307)
T 3r5x_A 54 KDIDFALLALHG 65 (307)
T ss_dssp TTCSEEEECCCS
T ss_pred cCCCEEEEeCCC
Confidence 356777766554
No 404
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=21.02 E-value=2.8e+02 Score=28.01 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=31.8
Q ss_pred CCCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc
Q 006164 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 454 dgdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~ 512 (658)
.|++||.+|-+..|. .+++.|...| .+||++++.+. -.+++++ .|.+..+-.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~---lGa~~vi~~ 202 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE--TIEWTKK---MGADIVLNH 202 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH--HHHHHHH---HTCSEEECT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH--HHHHHHh---cCCcEEEEC
Confidence 799999996444442 3344455555 48999987653 3444444 576655443
No 405
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=20.99 E-value=4.8e+02 Score=27.05 Aligned_cols=104 Identities=11% Similarity=0.161 Sum_probs=60.9
Q ss_pred HHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---------C---------chHHHHHHHHHhC--CCCE
Q 006164 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K---------HEGKLLLRRLVRK--GLSC 508 (658)
Q Consensus 449 ~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---------~---------~EG~~La~eL~~~--GI~v 508 (658)
.+.+. +..||..|.+.+=..++..+...|.. ++.++|... . .-...++..|.+. .+.+
T Consensus 113 q~~L~-~~~VlvvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v 190 (353)
T 3h5n_A 113 QDKLK-NAKVVILGCGGIGNHVSVILATSGIG-EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISV 190 (353)
T ss_dssp HHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEE
T ss_pred HHHHh-CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeE
Confidence 34443 57889999876544555666666764 333333321 0 0122344666664 4555
Q ss_pred EEEcc-----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEeec
Q 006164 509 TYTHI-----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 509 TlI~D-----sAv~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.+.. +.+.. +..+|.||.+.|... .--+.+.-+|+.+++|++-++
T Consensus 191 ~~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~--------~~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 191 SEIALNINDYTDLHK-VPEADIWVVSADHPF--------NLINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp EEEECCCCSGGGGGG-SCCCSEEEECCCCST--------THHHHHHHHHHHTTCCEEEEE
T ss_pred EEeecccCchhhhhH-hccCCEEEEecCChH--------HHHHHHHHHHHHhCCCEEEEE
Confidence 55432 22334 678898888776432 034566678999999999653
No 406
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.87 E-value=2.7e+02 Score=22.76 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=45.9
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCC--CEEEEcch--HHHHHhh--------hccEEEEcceeEecCCCeecccchHHH
Q 006164 481 FRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTHIN--AISYIIH--------EVTRVFLGASSVLSNGTVCSRVGTACV 548 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI--~vTlI~Ds--Av~~iM~--------~Vd~VivGAdaVlaNG~VvNKiGT~~l 548 (658)
.+|+|+|..+.. ...+...|...|. .|....+. ++.++-. ..|.||+..+- .+ .-|--.+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-----~~g~~~~ 74 (140)
T 1k68_A 3 KKIFLVEDNKAD-IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PK-----KDGREVL 74 (140)
T ss_dssp CEEEEECCCHHH-HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-----SCHHHHH
T ss_pred CeEEEEeCCHHH-HHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--Cc-----ccHHHHH
Confidence 467888877643 3345577778887 55555443 3333332 47888887542 22 2244444
Q ss_pred HHHHHh---CCCCeEeecccc
Q 006164 549 AMVAYG---FHIPVLVCCEAY 566 (658)
Q Consensus 549 Al~Ak~---~~VPVyV~aety 566 (658)
..+-+. .++|+++++...
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHcCcccccccEEEEecCC
Confidence 444444 479999987644
No 407
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=20.75 E-value=2.5e+02 Score=29.11 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=48.5
Q ss_pred EeeCChHHHHHHHHHHH-HcCCee--EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhhccEEEEcceeEec
Q 006164 459 LTYGSSSAVEMILQHAH-ELGKQF--RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 459 LT~g~SsaV~~vL~~A~-e~gk~f--~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaVla 535 (658)
+++-|+..+...++++. +.|..+ =||++-+-|.++-..=.+.|.. +|||+|=-
T Consensus 188 m~~~yd~~Lr~~a~~aA~~~gi~~~~Gvy~~~~GP~FeT~AE~r~~r~------------------------~GadaVgM 243 (303)
T 3la8_A 188 MSNAYTADYREVAHQVADKIGIKLDEGVYIGVSGPSYETPAEIRAFKT------------------------LGADAVGM 243 (303)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTCCCEEEEEEECCCSSCCCHHHHHHHHH------------------------TTCSEEES
T ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEEEEEeeCCccCCHHHHHHHHH------------------------cCCCEEec
Confidence 45566766656666544 445544 4788888998875432222221 26666643
Q ss_pred CCCeecccchHHHHHHHHhCCCCeEeecc
Q 006164 536 NGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 536 NG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
=|...|.+|+++++||.+++-
T Consensus 244 --------st~pEa~vAre~gi~~~~Is~ 264 (303)
T 3la8_A 244 --------STVPEVIVAVHSGLKVLGISA 264 (303)
T ss_dssp --------SSHHHHHHHHHTTCEEEEEEE
T ss_pred --------cHHHHHHHHHHcCCCEEEEEE
Confidence 357899999999999998874
No 408
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=20.70 E-value=2.4e+02 Score=25.91 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=41.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHHhC-CC
Q 006164 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF-HI 557 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~-~V 557 (658)
+|+|+|..|.. ...+...|...|+.|....+.. +..+-. ..|.|| +.+. -|.-.+..+-+.. ++
T Consensus 2 ~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------lp~~-----~g~~~~~~lr~~~~~~ 69 (223)
T 2hqr_A 2 RVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEKHSSI 69 (223)
T ss_dssp CEEEECSCHHH-HHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCT-----THHHHHHHHHHHCTTS
T ss_pred EEEEEcCCHHH-HHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE------eCCC-----CHHHHHHHHHhCCCCC
Confidence 56777776654 2234456667888887555432 222222 478887 3332 2444444444445 89
Q ss_pred CeEeecccc
Q 006164 558 PVLVCCEAY 566 (658)
Q Consensus 558 PVyV~aety 566 (658)
|+++++...
T Consensus 70 ~ii~lt~~~ 78 (223)
T 2hqr_A 70 VVLVSSDNP 78 (223)
T ss_dssp EEEEEESSC
T ss_pred cEEEEECCC
Confidence 999987653
No 409
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=20.68 E-value=1.3e+02 Score=25.50 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=20.5
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|.|++|.+.- ...--+.++..+||+|+
T Consensus 109 ~~dliV~G~~g~------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 109 GYELVVWACYPS------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp CCSEEEECSCCG------------GGTHHHHHHSSSEEEEC
T ss_pred CCCEEEEeCCCC------------chHHHHHHhCCCceEee
Confidence 699999998742 11223567778999986
No 410
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=20.60 E-value=2.1e+02 Score=30.16 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-----cCC-eeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH---------HHHH
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE-----LGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYI 519 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-----~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA---------v~~i 519 (658)
..+++|.|-+.++..+++.+.+ .|. +-+|++. +|.+-+. ...+...|+.+..+.... +-..
T Consensus 127 ~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~--~~~h~~~--~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~ 202 (497)
T 3mc6_A 127 GCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAP--VTAHAGF--DKAAYYFGMKLRHVELDPTTYQVDLGKVKKF 202 (497)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEE--TTSCHHH--HHHHHHSCCEEEEECBCTTTCSBCTTTTGGG
T ss_pred CeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEe--CCccHHH--HHHHHHcCCeEEEEecCcccCcCCHHHHHHH
Confidence 4688888877777666666543 231 1256653 4555443 234445699888885322 1111
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCCeEee
Q 006164 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 520 M~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.+-.++|+...--...|.+.. + -.|+-+|+.|+++++|=
T Consensus 203 i~~~~~~v~~~~p~nptG~~~~-l--~~i~~la~~~g~~livD 242 (497)
T 3mc6_A 203 INKNTVLLVGSAPNFPHGIADD-I--EGLGKIAQKYKLPLHVD 242 (497)
T ss_dssp CCSSEEEEEEETTCTTTCCCCS-C--TTTTTHHHHTTCCEEEE
T ss_pred HhhCCEEEEEECCCCCCCcCCC-H--HHHHHHHHHhCCEEEEE
Confidence 2121244443322223454433 2 24667899999999873
No 411
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.56 E-value=3.7e+02 Score=22.33 Aligned_cols=78 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcchHHHHHhhh-----ccEEEEcceeEecCCCeecccchHHHHHHHH
Q 006164 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-----VTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsAv~~iM~~-----Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak 553 (658)
...+|+|+|..+.. -..+...|...|..|....+..-+.-+-. .|.||+..+ .-..-|.-.+..+-+
T Consensus 2 ~~~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~-------l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 2 SLAKILVIDDESTI-LQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMK-------MPKLSGMDILREIKK 73 (143)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESC-------CSSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCC-------CCCCcHHHHHHHHHH
Q ss_pred hC-CCCeEeecc
Q 006164 554 GF-HIPVLVCCE 564 (658)
Q Consensus 554 ~~-~VPVyV~ae 564 (658)
.+ ++|+++++.
T Consensus 74 ~~~~~~ii~ls~ 85 (143)
T 3jte_A 74 ITPHMAVIILTG 85 (143)
T ss_dssp HCTTCEEEEEEC
T ss_pred hCCCCeEEEEEC
No 412
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=20.55 E-value=2.2e+02 Score=28.17 Aligned_cols=67 Identities=22% Similarity=0.166 Sum_probs=42.4
Q ss_pred EeCCCCCchHHHHHHHHHhCCCCEEEEcc---h---HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHHhCCCC
Q 006164 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N---AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (658)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vTlI~D---s---Av~~iM~~Vd~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~~VP 558 (658)
|+-.....+...+++.|.+.||++.-|+. . ++..+-+++.-++|||..|+ |..-+-.|...|--
T Consensus 18 Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~p~~~IGAGTVl----------t~~~a~~ai~AGA~ 87 (217)
T 3lab_A 18 VIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVC----------TADDFQKAIDAGAQ 87 (217)
T ss_dssp EECCSCGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTSEEEEECCC----------SHHHHHHHHHHTCS
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCeEeecccc----------CHHHHHHHHHcCCC
Confidence 34444557889999999999998766653 3 33333446666889996554 33444445555555
Q ss_pred eEe
Q 006164 559 VLV 561 (658)
Q Consensus 559 VyV 561 (658)
|+|
T Consensus 88 fiv 90 (217)
T 3lab_A 88 FIV 90 (217)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 413
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.55 E-value=2.9e+02 Score=27.36 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEcc--------hHHHHHhh--hcc
Q 006164 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 524 (658)
..+++|.|.+.++..+++.+.+.| -+|++.+ |.+.+.. ..+...|+.+..+.. ..+-..+. ++.
T Consensus 86 ~~i~~~~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 86 MEVLLGNGSDEIISMLALAAARPG--AKVMAPV--PGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCCTT--CEEEEEE--SCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred ceEEEcCCHHHHHHHHHHHHcCCC--CEEEEcC--CCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 456777777777766555543333 3455543 3332221 234567888877752 22333333 466
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHHhC--CCCeEe
Q 006164 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 525 ~VivGAdaVlaNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
.|++- .---..|.++..---..++-+|+.| ++.+++
T Consensus 160 ~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 160 IVYLA-YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred EEEEc-CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 66662 2222345444433344555678888 887765
No 414
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=20.46 E-value=1.6e+02 Score=29.19 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=3.7
Q ss_pred HhCCCCe
Q 006164 553 YGFHIPV 559 (658)
Q Consensus 553 k~~~VPV 559 (658)
...++|+
T Consensus 82 e~~g~~~ 88 (334)
T 2r85_A 82 ENMKVPY 88 (334)
T ss_dssp HTCCSCB
T ss_pred HHcCCCc
Confidence 3456664
No 415
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=20.46 E-value=3.4e+02 Score=27.68 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=32.5
Q ss_pred hccCCCEEEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE
Q 006164 451 KIRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI 511 (658)
.++.|++||.+|.+ .|. .++..|+..|- +||+++..+. -.+++ .+.|.+..+-
T Consensus 186 ~~~~g~~VlV~G~G-~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~---~~lGa~~vi~ 239 (363)
T 3uog_A 186 HLRAGDRVVVQGTG-GVALFGLQIAKATGA--EVIVTSSSRE--KLDRA---FALGADHGIN 239 (363)
T ss_dssp CCCTTCEEEEESSB-HHHHHHHHHHHHTTC--EEEEEESCHH--HHHHH---HHHTCSEEEE
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHcCC--EEEEEecCch--hHHHH---HHcCCCEEEc
Confidence 35689999999954 443 33444555554 8998886553 23344 4457765554
No 416
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=25.85 E-value=21 Score=36.48 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=13.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHH
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE 476 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e 476 (658)
..+++|.|.+.++..+++.+.+
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~ 111 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK 111 (392)
Confidence 3566666666666655555443
No 417
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=20.25 E-value=92 Score=33.61 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=47.7
Q ss_pred HHHHH-HhccCCCEEEeeCChHHHHHHHHHHHHc---CCeeEEEEeC--CCC-Cc--------------hHHHHHHHHHh
Q 006164 445 VKHAV-TKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVD--SRP-KH--------------EGKLLLRRLVR 503 (658)
Q Consensus 445 a~~a~-~~I~dgdvILT~g~SsaV~~vL~~A~e~---gk~f~ViV~E--SRP-~~--------------EG~~La~eL~~ 503 (658)
++.|+ ++|+||++|...+....=+.++....++ -+.++|+-.- ..+ +. -|.. .+++.+
T Consensus 14 a~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~-~r~~i~ 92 (439)
T 3d3u_A 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGN-SRPASR 92 (439)
T ss_dssp HHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------------
T ss_pred HHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChH-HHHHHH
Confidence 34566 7899999999988752222233333332 2567776431 111 11 1222 234444
Q ss_pred CC-CCEEEEcchHH-HHHhh---hccEEEEcceeEecCCCeec
Q 006164 504 KG-LSCTYTHINAI-SYIIH---EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 504 ~G-I~vTlI~DsAv-~~iM~---~Vd~VivGAdaVlaNG~VvN 541 (658)
.| +..+-+..+.+ -++.. .+|..|+.|...-.+|.+.-
T Consensus 93 ~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~ 135 (439)
T 3d3u_A 93 DRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF 135 (439)
T ss_dssp --------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC
T ss_pred cCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE
Confidence 44 23333333334 34443 58999999999999998755
No 418
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=20.24 E-value=2.6e+02 Score=26.57 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=36.7
Q ss_pred HHhCCCCEEEEc--chH---HHHHhhhccEEEEcceeEecCCCee-cccchHHHHHHHHhCCCCeEeeccccc
Q 006164 501 LVRKGLSCTYTH--INA---ISYIIHEVTRVFLGASSVLSNGTVC-SRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 501 L~~~GI~vTlI~--DsA---v~~iM~~Vd~VivGAdaVlaNG~Vv-NKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
+...|++++... ... +..+-.++|.||+|.+.- ++.+- --.|+..-.++ ++.++||+|+-+.++
T Consensus 83 ~~~~g~~~~~~~~~g~~~~~I~~~~~~~dliV~G~~g~--~~~~~~~~~Gs~~~~v~-~~a~~PVlvv~~~~~ 152 (268)
T 3ab8_A 83 ALAAGVAVEAVLEEGVPHEAILRRARAADLLVLGRSGE--AHGDGFGGLGSTADRVL-RASPVPVLLAPGEPV 152 (268)
T ss_dssp HHHTTCCEEEEEEEECHHHHHHHHHTTCSEEEEESSCT--TSCTTCCSCCHHHHHHH-HHCSSCEEEECSSCC
T ss_pred HHhCCCCeEEEEecCCHHHHHHhhccCCCEEEEeccCC--CccccccccchhHHHHH-HhCCCCEEEECCCCC
Confidence 445676665432 112 222233799999998852 10121 22576555554 667899999876543
No 419
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=20.23 E-value=3.9e+02 Score=29.20 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=65.3
Q ss_pred CEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCC-Cch-HHHHHHHHHhCCCCEEEE-cc----hHHHHHhhh-----
Q 006164 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRP-KHE-GKLLLRRLVRKGLSCTYT-HI----NAISYIIHE----- 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP-~~E-G~~La~eL~~~GI~vTlI-~D----sAv~~iM~~----- 522 (658)
.++|..|-+.-+...| +...++|.. +|+++.-++ ..+ -.++..+|.+.|..++++ +| .++..++.+
T Consensus 240 ~~vLITGgsgGIG~alA~~La~~Ga~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 240 GSVLVTGGTGGIGGRVARRLAEQGAA-HLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp SEEEEETCSSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CEEEEECCCCchHHHHHHHHHHCCCc-EEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 6777777766554333 344455543 444443332 233 356778999999999887 33 356666653
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHHhCCCCeEeeccc
Q 006164 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 523 -Vd~VivGAdaVlaNG~V-------------vNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+|.||-.|-....++.+ .|-.|++.+.-++..+...++|++-+
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS 375 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSS 375 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 56666655332233332 24568888877777777777776544
No 420
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=20.17 E-value=1e+02 Score=30.27 Aligned_cols=99 Identities=10% Similarity=0.099 Sum_probs=54.1
Q ss_pred EEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEE----cchHHHHHhhhccEEEEcce
Q 006164 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 457 vILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI----~DsAv~~iM~~Vd~VivGAd 531 (658)
+||..|-+.-+..-| +.+.++| .|+++..|....... ...+ ++++ .|..+..++..+|.||--|-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~-----~~~~--~~~~~~Dl~~~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 3 LIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF-----VNEA--ARLVKADLAADDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG-----SCTT--EEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred EEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh-----cCCC--cEEEECcCChHHHHHHhcCCCEEEECCC
Confidence 577778766554433 3444455 444444443221111 1222 3333 23456667778888886554
Q ss_pred eEecCCC--------eecccchHHHHHHHHhCCCCeEeeccc
Q 006164 532 SVLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 532 aVlaNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
....+.+ -.|-.||..+.-+|+.+++.-+|..-+
T Consensus 73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2211111 136779999999999988876665544
No 421
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=20.09 E-value=3.4e+02 Score=25.19 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=42.6
Q ss_pred EEEeCCCCCchHHHHHHHHHhCCCCEEEEcchH--HHHHhh-hccEEEE-cceeEecCCCeec--ccchHHHHHHH-HhC
Q 006164 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFL-GASSVLSNGTVCS--RVGTACVAMVA-YGF 555 (658)
Q Consensus 483 ViV~ESRP~~EG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~Vd~Viv-GAdaVlaNG~VvN--KiGT~~lAl~A-k~~ 555 (658)
|.|++--..+ ...+.+.|.+.|+.++++.... ...+.. ++|.+|+ |-- |+... ..|-. ..++- -..
T Consensus 4 i~iid~~~s~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~~dglil~gG~-----~~~~~~~~~~~~-~~~i~~~~~ 76 (195)
T 1qdl_B 4 TLIIDNYDSF-VYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGP-----GTPEKREDIGVS-LDVIKYLGK 76 (195)
T ss_dssp EEEEECSCSS-HHHHHHHHHHTTCEEEEEETTTSCHHHHHHHCCSEEEECCCS-----SCTTSHHHHTTH-HHHHHHHTT
T ss_pred EEEEECCCch-HHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCCCCEEEECCCC-----CChhhhhhhhHH-HHHHHHhcC
Confidence 5566644433 3466788999999998887543 223332 5899988 531 11111 12322 12221 246
Q ss_pred CCCeEeecc
Q 006164 556 HIPVLVCCE 564 (658)
Q Consensus 556 ~VPVyV~ae 564 (658)
++|++-+|=
T Consensus 77 ~~PvLGIC~ 85 (195)
T 1qdl_B 77 RTPILGVCL 85 (195)
T ss_dssp TSCEEEETH
T ss_pred CCcEEEEeh
Confidence 899997764
No 422
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=20.06 E-value=1.2e+02 Score=27.60 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=35.0
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCCEEEEcchHHHHHh------hhccE
Q 006164 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYII------HEVTR 525 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vTlI~DsAv~~iM------~~Vd~ 525 (658)
..+.+||=.|+++-. ++..+.+.+...+|+.+|-.|.. ..++ +.+...|+.++++...+...+- ...|.
T Consensus 29 ~~~~~vLDiG~G~G~--~~~~l~~~~~~~~v~~vD~~~~~--~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 104 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGC--IAVSIALACPGVSVTAVDLSMDA--LAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHA 104 (215)
T ss_dssp CTTEEEEEEESSBCH--HHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSE
T ss_pred CCCCEEEEecCCHhH--HHHHHHHhCCCCeEEEEECCHHH--HHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccE
Confidence 568899999887643 12233334556799999987753 2333 3445556677777655555333 34777
Q ss_pred EEE
Q 006164 526 VFL 528 (658)
Q Consensus 526 Viv 528 (658)
|+.
T Consensus 105 i~~ 107 (215)
T 4dzr_A 105 IVS 107 (215)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 423
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=20.05 E-value=3.7e+02 Score=27.74 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=50.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHH----cCCe-eEEEEeCCCCCchHHHHHHHHHhCCCCEEEEc-----------------
Q 006164 455 GDVLLTYGSSSAVEMILQHAHE----LGKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------------- 512 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e----~gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vTlI~----------------- 512 (658)
..+++|.|-+.++..+|+.+.. .|.. ..|++. .+.+.... ..+...|..+..+.
T Consensus 92 ~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T 1ax4_A 92 DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS--NFHFDTTA--AHVELNGCKAINIVTEKAFDSETYDDWKGDF 167 (467)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE--SSCCHHHH--HHHHHTTCEEEECBCGGGGCTTSCCTTTTCB
T ss_pred CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe--ccccchhh--HHHhccCCceecccccccccccccCCccccc
Confidence 4677787777777776766655 5543 125555 44443322 22334455444321
Q ss_pred -chHHHHHhh-----hccEEEEcceeEec-C-CCeecccchHHHHHHHHhCCCCeEee
Q 006164 513 -INAISYIIH-----EVTRVFLGASSVLS-N-GTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 513 -DsAv~~iM~-----~Vd~VivGAdaVla-N-G~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
...+-..+. ++.+|++- .+.. . |.++..-=-..|+-+|+.|++++++=
T Consensus 168 d~~~le~~i~~~~~~~~~~vi~~--~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 168 DIKKLKENIAQHGADNIVAIVST--VTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEE--SSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHhcCCCCeeEEEEe--ccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 123333443 23334331 1111 1 22222211235778999999998873
Done!