RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006164
(658 letters)
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 273 bits (700), Expect = 8e-87
Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 20/303 (6%)
Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
A +A ++ E ++ + L +LT+ I + ++VS G +
Sbjct: 21 ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77
Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
+A + S S+ K + E F+ +I L+ I T I+DG +LT+ S V
Sbjct: 78 LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135
Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
+L+ A K+F V + +S+P GK + + L + T A+ YI+ + V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195
Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAG 588
GA V+ NG + +++GT +A+ A + P V E++KF L+
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN------------Q 243
Query: 589 DPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIV 648
+ L ++L+ + D T ++L+ TD G++ P++V +
Sbjct: 244 QDVPDKFKYKAD---TLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDEL 300
Query: 649 REY 651
+
Sbjct: 301 IKL 303
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 128 bits (323), Expect = 3e-33
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 38/258 (14%)
Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
++ P S+ N RF+ + + L S F+ + A R +
Sbjct: 55 VVKVNPSMASLYNLARFI-----------PVTNRRDILKSRALEFLRR-MEEAKRELASI 102
Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
I DGDV++T+ SS V I++ A E K+F+V++ +S P +EG L R L G+
Sbjct: 103 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 162
Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
+ E + +GA + +G V ++ GT +A+ + IP V E YK
Sbjct: 163 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222
Query: 568 FHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSD 627
FH ++ + + D+ N+++ N+++D TP
Sbjct: 223 FHPTLKSGDV------------------MLMERDL-------IRGNVRIRNVLFDVTPWK 257
Query: 628 YVSLIITDYGMI-PPTSV 644
YV IIT+ G++ PP +
Sbjct: 258 YVRGIITELGIVIPPRDI 275
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase,
hexamer, rossmann fold; 2.50A {Thermococcus
kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Length = 338
Score = 125 bits (316), Expect = 9e-32
Identities = 73/293 (24%), Positives = 133/293 (45%), Gaps = 21/293 (7%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPIS-LSES 419
+++ L + RP +VS+ NA+R++ + S
Sbjct: 52 QAEKSKATNVDEFWKEMKQAAK----ILFETRPTAVSLPNALRYVMHRGKIAYSSGADLE 107
Query: 420 EAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK 479
+ + + + + FI+ A I + +I DGDV++T+ S A +++ A E GK
Sbjct: 108 QLRFVIINAAKEFIHNSE-KALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGK 166
Query: 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTV 539
+V++ ++RPK +GK+ + L G+ Y +A + + +V +GA S+ NG V
Sbjct: 167 DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAV 226
Query: 540 CSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGR 599
+++GTA +A+ A + ++ E YKFH + G I
Sbjct: 227 INKIGTALIALTAKEHRVWTMIAAETYKFHPE-------------TMLGQLVEIEMRDPT 273
Query: 600 EDINHLDGWDKS-ENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 651
E + D +N+++ N +D TP +YV +IIT+ G+IPP + I+RE
Sbjct: 274 E-VIPEDELKTWPKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREE 325
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 81.2 bits (201), Expect = 1e-16
Identities = 63/296 (21%), Positives = 122/296 (41%), Gaps = 40/296 (13%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESE 420
A +D T R L +L RP ++++ A+ L + ++S +E
Sbjct: 88 AAKDIETDNVTEFRRRLEDIKQ----YLNSSRPTAINLSWALERLSHSVEN---AISVNE 140
Query: 421 AKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT-----------YGSSSAVEM 469
AK L + + I + R+I ++A+ + GD ++T YG++ A
Sbjct: 141 AKTNLVHEAIQ-IQVEDEETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAP-- 197
Query: 470 ILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYII--HEVTRV 526
A + + ++RP +G +L L++ G+ T + ++ + +++ V
Sbjct: 198 -FYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAV 256
Query: 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLL 586
+GA + NG +++GT +A++A F IP V F D+
Sbjct: 257 IVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTF------DTKVKC------ 304
Query: 587 AGDPDSISKVPGREDINHLDGWDKS-ENLQLLNLIYDATPSDYVSLIITDYGMIPP 641
G I + E + + G + N+ + N +D TP D +S IIT+ G++
Sbjct: 305 -GADIPIEERDPEE-VRQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMTG 358
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural
genomics, translation initiation factor, AIF-2B subunit,
PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Length = 347
Score = 79.6 bits (197), Expect = 3e-16
Identities = 61/281 (21%), Positives = 118/281 (41%), Gaps = 36/281 (12%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINE 435
LT + L RP +V++ A+ ++ + L ++ + +
Sbjct: 74 SLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALK-MAY 129
Query: 436 KIILADRVIVKHAVTKIRDGDVLLT-----------YGSSSAVEMILQHAHELGKQFRVV 484
+ I ++ I K+ I+DG +LT YG++ V ++ A E GK+ RV
Sbjct: 130 EDIEVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGV---IRAAVESGKRIRVF 186
Query: 485 IVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYII--HEVTRVFLGASSVLSNGTVCS 541
++RP +G +L L++ G+ N +++ + V +GA + NG +
Sbjct: 187 ADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTAN 246
Query: 542 RVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGRED 601
++GT +A++A +IP V D + G+ I + E
Sbjct: 247 KIGTYSLAVLAKRNNIPFYVAAPVSTI------DPTIRS-------GEEIPIEERRPEE- 292
Query: 602 INHLDGWDKS-ENLQLLNLIYDATPSDYVSLIITDYGMIPP 641
+ H G + E +++LN +D T + ++ IIT+ G+I P
Sbjct: 293 VTHCGGNRIAPEGVKVLNPAFDVTENTLITAIITEKGVIRP 333
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.1 bits (197), Expect = 1e-15
Identities = 80/592 (13%), Positives = 146/592 (24%), Gaps = 206/592 (34%)
Query: 20 FFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLP----- 74
F P P + +D +P L G FL V L
Sbjct: 37 FNKILPEPTEGFAADD-EPTTPAELV-----GKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 75 -----------HSPSDAFPPPSPTTTTTTTSL------GDFSDDVTAASSPPSA---AAA 114
H+ + + TT T L SA A
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 115 AARVR------GRGSS--------------------------------VKQQGAASSFPG 136
+ G+G++ ++ A
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 137 GGFEV----------PPS---VKAPSSVPASGLT-------TVSVVKLPPGISENAGGSV 176
G + P + P S P G+ T ++ PG +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 177 SVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPT--- 233
+ Q + A A A + + + +
Sbjct: 271 TGHSQ--------------------GLVTA--VAIAETDSW------ESFFVSVRKAITV 302
Query: 234 ------KSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKK 287
+ P + P ++ S + + VP P M + L +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENN----------EGVPSP-M-----LSISNLTQ 346
Query: 288 RSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGG 347
V N HLP + + ++ + G
Sbjct: 347 EQVQDYVNKTNS-----HLPAGKQ----------------VEISLVNGAKNL----VVSG 381
Query: 348 NARCIAMLQAFQEAIRDYSTPPAKTLSRDLTA--KISSYVSFLIDCRPLSV---S--MGN 400
+ L +R P SR + K+ FL P++ S +
Sbjct: 382 PPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL----PVASPFHSHLLVP 434
Query: 401 AIRFLKSQIAKIPISLSESEAKATLH-----SDIERF---INEKI---ILADRV----IV 445
A + + K +S + + + ++ SD+ I+E+I I+ V
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 446 KHAVTKIRD-GDVLLTYGSSSAVEMILQHAHELGKQFRVVI---VDSRPKHE 493
+ T I D G G +S + ++ + G RV++ +D P +
Sbjct: 495 QFKATHILDFGP-----GGASGLGVLTHRNKD-GTGVRVIVAGTLDINPDDD 540
Score = 48.1 bits (114), Expect = 9e-06
Identities = 103/669 (15%), Positives = 193/669 (28%), Gaps = 244/669 (36%)
Query: 40 HST-PLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDF 98
+ST PL S G+ +++P +S L + F L +
Sbjct: 4 YSTRPLT--LSHGSLEHVLLVPTASFFIASQL-------QEQF----------NKILPEP 44
Query: 99 SDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTT 158
++ A P + A + G SS+ + F
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD----------------------- 81
Query: 159 VSVVKLPPGISENA--GGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKA 216
V+ L EN G+ ++ + + T+ + + + + A+ AK
Sbjct: 82 -QVLNLCLTEFENCYLEGN---DIHA--LAAKLLQENDTTLVKTKELIKNYITARIMAK- 134
Query: 217 EGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKK-------GGDRSVEKDRKKDV 269
RP ++++S + A E GG
Sbjct: 135 --------------------RPFDKKSNSALFRAVGEGNAQLVAIFGG------------ 162
Query: 270 PHPRMQ-----YDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQL--PVLQSKF 322
Q Y + EL R L Y+ L +++
Sbjct: 163 -----QGNTDDYFE----------------------EL-RDL--YQTYHVLVGDLIKFSA 192
Query: 323 FQLDTLHPAVYKVGLQYLSG-DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKI 381
L L + G +I + L+ +TP L L+ I
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNI-------LEWLE------NPSNTPDKDYL---LSIPI 236
Query: 382 S-------SYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFIN 434
S +++ + L + G +LK AT HS
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG---------------ATGHS------- 274
Query: 435 EKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQ---HAHELGKQFRV------VI 485
+ ++ A V + + + A+ ++ +E + ++
Sbjct: 275 QGLVTA--VAIAETDS----WESFFV-SVRKAITVLFFIGVRCYE---AYPNTSLPPSIL 324
Query: 486 VDSRPKHEGK----LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGT--- 538
DS +EG L + L ++ + ++N + + +V + L NG
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEIS----LVNGAKNL 377
Query: 539 VCSRVGTACVAMVAYGFHIPVL-VCCEA------YKFHERVQLDSICSNE-LGV------ 584
V S G ++ YG ++ + + F ER SN L V
Sbjct: 378 VVS--GPP-QSL--YGLNLTLRKAKAPSGLDQSRIPFSERK---LKFSNRFLPVASPFHS 429
Query: 585 -LLAGDPDSISKVPGREDINHLDGWDKSENLQLLNL-IYD-ATPSDYVSLIITDYGMIPP 641
LL D I+K + +++ ++ + + + +YD SD L G I
Sbjct: 430 HLLVPASDLINKDLVKNNVS----FNAKD----IQIPVYDTFDGSDLRVL----SGSISE 477
Query: 642 TSVPVIVRE 650
V I+R
Sbjct: 478 RIVDCIIRL 486
Score = 40.4 bits (94), Expect = 0.002
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 39/141 (27%)
Query: 94 SLGDFSDDVTAASSPPSAAAAAAR----------VRGRGSSVKQQGAASSFPGGGFEVPP 143
SLG+++ A A+ A V RG ++ Q A G
Sbjct: 1763 SLGEYA-----------ALASLADVMSIESLVEVVFYRGMTM--QVAVPRDELGRSNY-- 1807
Query: 144 SVKA--PSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRA-LNSKPLKEKTSKA-E 199
+ A P V A+ + ++ + + + G V + N + ++ A +
Sbjct: 1808 GMIAINPGRV-AASFSQEALQYVVERVGKRTGWLVEI------VNYNVEN--QQYVAAGD 1858
Query: 200 RRAIQEAQRAAKAAAKAEGIK 220
RA+ K + I
Sbjct: 1859 LRALDTVTNVLN-FIKLQKID 1878
Score = 38.1 bits (88), Expect = 0.012
Identities = 51/306 (16%), Positives = 84/306 (27%), Gaps = 101/306 (33%)
Query: 389 IDCRPLSVSMGNAIRF--------------LKSQ-IAKIPISLSESEAKATLHSDIE--- 430
RPL++S G+ + L+ Q +P A + E
Sbjct: 4 YSTRPLTLSHGS-LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAV-EMILQHAHE--L-GKQFRVVIV 486
+F+ + + + V G V + L L G +
Sbjct: 63 KFLG------------YVSSLVEPSKV----GQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA 546
+++ L+ + + K Y I A + ++S L G A
Sbjct: 107 KLLQENDTTLVKTKELIK----NY--ITARIMAKRPFDK---KSNSALFRA---VGEGNA 154
Query: 547 CVAMVAYGF----HIPVLVCCEAYKFHE--------RVQLDSICSNELGVL--LAGDPDS 592
+ + F + + Y F E V + + L L
Sbjct: 155 QLVAI---FGGQGNT------DDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 593 ISKVPGRE-DINHLDGWDKSENLQLLNLIYDATPS-DYVSLIITDYGMIPPTSVPVIVRE 650
KV + +I W L N TP DY+ I P S P+I
Sbjct: 205 AEKVFTQGLNIL---EW-------LENP--SNTPDKDYLLSI--------PISCPLI--- 241
Query: 651 YGRGQL 656
G QL
Sbjct: 242 -GVIQL 246
Score = 35.8 bits (82), Expect = 0.062
Identities = 34/247 (13%), Positives = 69/247 (27%), Gaps = 106/247 (42%)
Query: 461 YGSSSAVEMILQHAHE-----LGKQFRVV-IVDSRPK----HEG---------------- 494
Y +S A + + A G F ++ IV + P H G
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 495 ----------KLLLRRLVRKGLSCTYTH--------------INAISYIIHEVTR----- 525
+ + + + S T+ + + E +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 526 ----VFLGAS----SVLSNGTVCSRVGTACVAMVAYGFHIPV-----LVCCEAYKFHER- 571
F G S + L A +A V + + +V R
Sbjct: 1754 PADATFAGHSLGEYAAL-----------ASLADV-----MSIESLVEVV-------FYRG 1790
Query: 572 ------VQLDSICSNELGVLLAGDPDSISKVPGREDINHLD---GWDKSENLQLLNLIYD 622
V D + + G ++A +P ++ +E + ++ G ++++N Y+
Sbjct: 1791 MTMQVAVPRDELGRSNYG-MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--YN 1847
Query: 623 ATPSDYV 629
YV
Sbjct: 1848 VENQQYV 1854
Score = 30.8 bits (69), Expect = 1.8
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 51/150 (34%)
Query: 128 QGAASSFPGGG---FEVPPSVKA------PSSVPASGLTTVSVVKL-PPGISENAGG--- 174
QG+ G G ++ + + G + + +V P ++ + GG
Sbjct: 1624 QGSQE--QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 175 --------SVSVEVQSDRALNSKP----LKEKTSKAERRAIQE-------AQRA----AK 211
++ E D L ++ + E ++ R+ + Q A K
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 212 AAA---KAEGIKTPAA----------TALA 228
AA K++G+ A ALA
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Score = 29.6 bits (66), Expect = 4.5
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 50/110 (45%)
Query: 1 MDS-RRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMI 59
M S ++ + V + TN+ LP + + ++ + N V+
Sbjct: 338 MLSISNLTQEQVQDYVNK----TNSHLPAGK-------QVE---ISLVNGAKNL---VVS 380
Query: 60 PPP----------------------RHPSSSLLPR-----LP-----HSP 77
PP R P S + LP HS
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Score = 28.9 bits (64), Expect = 7.4
Identities = 32/158 (20%), Positives = 39/158 (24%), Gaps = 58/158 (36%)
Query: 27 PPDRTQSDPP------------DPI----HSTPLADASS-------PGNFL---SPVMIP 60
P QS P P+ HS L AS N + IP
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 61 --------PPRHPSSSLLPRL----PHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSP 108
R S S+ R+ P + TT T + DF
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVK-WE---TTTQFKATHILDFG--------- 505
Query: 109 PSAAAAAAR-----VRGRGSSVKQQGAASSFPGG--GF 139
P A+ G G V G P GF
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit
delta, structural GEN PSI, protein structure initiative;
1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Length = 351
Score = 76.6 bits (189), Expect = 3e-15
Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 40/295 (13%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESE 420
A R+ L L FL RP +V++ I + K S E
Sbjct: 61 AAREREFADVDELKEHLKKAAD----FLASTRPTAVNLFVGIERALNAALK---GESVEE 113
Query: 421 AKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT-----------YGSSSAVEM 469
K + E+ + E+ + +R + ++ + DGDV+LT +G++ V
Sbjct: 114 VKELALREAEK-LAEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGV-- 170
Query: 470 ILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYII--HEVTRV 526
++ A E GK+ RV+ ++RP ++G +L L+ G+ T + + ++ V +V
Sbjct: 171 -VRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKV 229
Query: 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGVLL 586
+GA ++ + V +++GT V++VA +IP V F + E
Sbjct: 230 IVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVVIEER---- 284
Query: 587 AGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 641
+ + R+ N+++ N +D TP + V+ +IT+YG+I P
Sbjct: 285 --PREELIFCGKRQ--------IAPLNVKVYNPAFDPTPLENVTALITEYGVIYP 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 6e-15
Identities = 65/423 (15%), Positives = 121/423 (28%), Gaps = 114/423 (26%)
Query: 308 QYEHGTQLPVLQSKFFQ-------LDTLHPAVYKVGLQYL--SGDICGGNARCIAMLQAF 358
QY++ L V + F D + K + ++ S D G R L +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 359 QEAI----------RDYS--TPPAKTLSRDLTAKISSYVSFLIDCR-----------PLS 395
QE + +Y P KT R + Y I+ R +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYN 130
Query: 396 VSMGNAIRFLKSQIAKIPISLSE--SEAKATLH----SDIERFINEKIILADRVIVKHAV 449
VS R K+ +L E + S K +A V + + V
Sbjct: 131 VS-----R--LQPYLKLRQALLELRPAKNVLIDGVLGSG-------KTWVALDVCLSYKV 176
Query: 450 TKIRDGDVL-LTYGSSSAVEMILQHAHELGKQFRVVIVD--------SRPKHEGKLLLRR 500
D + L + ++ E +L+ +L Q H + LRR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 501 LVRKGLSCTYTHINAISYII------HEVTRVFLGASSVLSNGTVCSR-VGTACVAMVAY 553
L++ ++ + F + +L + +R A
Sbjct: 237 LLKS-------KPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAAT 285
Query: 554 GFHIPVLVCCEAYKFHERVQLDSICSNELGV--------LLAGDPDSISKVPG--REDIN 603
HI + ++ S+ L +L +P +S + R+ +
Sbjct: 286 TTHISLDHHSMT--LTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 604 HLDGWDKSENLQLLNLI---YDA-TPSD----YVSLIITDYGM-IPPTSVPVIVREYGRG 654
D W +L +I + P++ + L + IP ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSL----- 394
Query: 655 QLW 657
+W
Sbjct: 395 -IW 396
Score = 49.1 bits (116), Expect = 4e-06
Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 63/234 (26%)
Query: 267 KDVPHPRM----------QYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLP 316
P + + D V KL K S+V+ + E + L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTISI----PSIYL- 433
Query: 317 VLQSKFFQLDTLHPAV---YKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTL 373
L+ K LH ++ Y + + S D+ + Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDL-------------IPPYLDQY-------- 472
Query: 374 SRDLTAKISSYVSF-LIDCRPL-SVSMGNAI----RFLKSQIAKIPISLSESEAKATLHS 427
S++ L + +++ + RFL+ +I + + S +
Sbjct: 473 -------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 428 DI---ERFINEKIILADRVI--VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE 476
+ + +I + +R++ + + KI + L+ + + + L E
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKI--EENLICSKYTDLLRIALMAEDE 577
Score = 44.8 bits (105), Expect = 1e-04
Identities = 73/526 (13%), Positives = 151/526 (28%), Gaps = 156/526 (29%)
Query: 177 SVEVQSDRALNSKPLKEKTSKAERRAIQ--EAQRAAKAAAKAEGIKTPAATALANAKPTK 234
E+ D + SK T R +++ E + L + T+
Sbjct: 48 KEEI--DHIIMSKDAVSGT----LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 235 STRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVV--- 291
+PS + + ++ D + K +V + + + +L+ V
Sbjct: 102 QRQPSMMTR---MYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 292 ------KPT---EARNRVELFRHLP----------QYEHGTQLPVLQSKFFQLDT----- 327
K + ++ + T L +LQ +Q+D
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 328 ---------------------LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYS 366
L Y+ L L ++ NA+ AF + S
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQ--NAKAW---NAF-----NLS 265
Query: 367 TPPAKTL--SRD------LTAKISSYVSFLIDCRP----------LSVSMGNAIRFLKSQ 408
K L +R L+A ++++S L L + + L +
Sbjct: 266 ---CKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 409 IAKI-PISLSESEAKATLHSDIERFINEKIILADRV--IVKHAVTKIRDGD--------- 456
+ P L S ++ + + N K + D++ I++ ++ + +
Sbjct: 322 VLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 457 --------------VLLTYGSSSAVEMILQHAHELG------KQFRVVI----VDSRPKH 492
++ S V +++ H+ K+ + I ++ + K
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 493 EGKLLL-RRLV-----RKGLSCTYTHINAI-----SYIIH-----EVTRVFLGASSVLSN 536
E + L R +V K + S+I H E V +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 537 -GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581
+ ++ A A G + L + YK + IC N+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-------ICDND 538
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 66.5 bits (163), Expect = 8e-12
Identities = 70/329 (21%), Positives = 128/329 (38%), Gaps = 86/329 (26%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLS--- 417
A + + R++ + + F++ RP +V++ N +R LK+Q+ K+ + +
Sbjct: 77 ATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 418 -----ESEAKATLHSDIERFINEKI-ILADRVIVKHAVTKIRDGDVLLT----------- 460
A+A +D+ NE I I+ A + RD +LT
Sbjct: 137 VAQAFVELAEAVYTNDVA--FNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSR 194
Query: 461 YGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRL-----VRKGLSCTYTHI- 513
YG++ V ++ GK RV +RP ++G RL V++ + CT I
Sbjct: 195 YGTALGV---VRQLFYDGKLERV-YACETRPWNQGA----RLTVYECVQEDIPCTL--IC 244
Query: 514 -NAISYII--HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC------- 563
A S ++ ++ V +GA + NG +++GT +A+ A + + V
Sbjct: 245 DGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDV 304
Query: 564 ----------EAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINHLDGWDKSEN 613
E ER +P I+ + DG +
Sbjct: 305 KTASGNHVEIE-----ER-----------------EPTEITTNLVTKQRVVADG----PH 338
Query: 614 LQLLNLIYDATPSDYVSL-IITDYGMIPP 641
L + N ++D TPS+ ++ IIT+ G+ P
Sbjct: 339 LSIWNPVFDITPSELITGGIITEKGVQAP 367
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 191
Score = 43.0 bits (102), Expect = 7e-05
Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 501 LVRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556
LV + T ++I+Y I + F+GA ++ NG +++GT +A++ F
Sbjct: 26 LVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFG 85
Query: 557 IPVLVCC------------EAYKFHERVQLDSICSNELGVLLAGDPDSISKVPGREDINH 604
I V + ER E ++ G + + +
Sbjct: 86 IKFFVVAPKTTIDNVTETGDDIIVEER------NPEEF-KVVTGTVINPENGSLILNESG 138
Query: 605 LDGWDKS----ENLQLLNLIYDATPSDYVSLIITDYGMIPP 641
K + + N +D TP + + IIT+ G+
Sbjct: 139 EPITGKVGIAPLEINVWNPAFDITPHELIDGIITEEGVFTK 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 181 QSDRALNSKPLKEKTSK-AERRAIQEAQRAAKAAAKAEGIKTPAATALAN---------A 230
Q+DR L +P E K E + + + A + + + A L
Sbjct: 76 QADR-LTQEP--ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 231 KPTKSTRPSP-----QRNDS 245
K + R + Q +
Sbjct: 133 KNKINNRIADKAFYQQPDAD 152
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 37.0 bits (85), Expect = 0.017
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 17/127 (13%)
Query: 22 TNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAF 81
++ L P + P + S+ +FL+ + PP P + P P +P+
Sbjct: 10 HSSGLVPRGSHMVIPSA------SVTSAASDFLAALH-PPVTVPDPA--PPPPPAPAAGN 60
Query: 82 PPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEV 141
PP + T + + + + P + + A A GR + AS+ P G V
Sbjct: 61 PPDTVTGDSVLQRI------LRGPTGPGTTSLAPAVRYGRQPG--PEAPASAPPAAGRAV 112
Query: 142 PPSVKAP 148
P P
Sbjct: 113 PGLYHHP 119
Score = 30.9 bits (69), Expect = 1.5
Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 5/108 (4%)
Query: 60 PPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVR 119
H SS L+PR H + + + +L A PP A AA
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPS-ASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63
Query: 120 GRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPG 167
G + AP+ + PP
Sbjct: 64 TVTGDSV----LQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPA 107
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 37.0 bits (85), Expect = 0.017
Identities = 15/98 (15%), Positives = 29/98 (29%)
Query: 22 TNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAF 81
+ P Q P S+P+ P + +S M P ++
Sbjct: 41 SLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLS 100
Query: 82 PPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVR 119
P +P +++ + V + PS A+
Sbjct: 101 SPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKH 138
Score = 35.5 bits (81), Expect = 0.055
Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 23 NAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPV---------MIPPPRHPSSSLLP-- 71
+ P R P H + SPG SP+ M PP SS + P
Sbjct: 23 SLTSPTGRGSMAAPSL-HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHS 81
Query: 72 -RLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQ 127
+P +P+ F SP ++ + D A S K
Sbjct: 82 MSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKH 138
Score = 28.9 bits (64), Expect = 6.7
Identities = 20/154 (12%), Positives = 43/154 (27%), Gaps = 10/154 (6%)
Query: 33 SDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP-SPTTTTT 91
+ ++ + L+ P R ++ P P +T
Sbjct: 3 HHHHHHVDDDDKMFSTQVNSSLTS---PTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59
Query: 92 TTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSV 151
++ + + SSP + + + G ++ P + P +
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSV------PTTPTLGFSTGSPQLSSPMNPVSSSEDIK 113
Query: 152 PASGLTTVSVVKLPPGISENAGGSVSVEVQSDRA 185
P GL V V P + + + DR+
Sbjct: 114 PPLGLNGVLKVPAHPSGNMASFTKHICAICGDRS 147
Score = 28.5 bits (63), Expect = 7.6
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 11/136 (8%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLL-----PRLPHSPSDAF 81
++ L + G+ +P + P S SP +
Sbjct: 7 HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66
Query: 82 PPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEV 141
PP ++ + + P+ + + + P G
Sbjct: 67 GPPFSVISSPMGPHS------MSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 142 PPSVKAPSSVPASGLT 157
V A S + T
Sbjct: 121 VLKVPAHPSGNMASFT 136
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 36.9 bits (85), Expect = 0.019
Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNF-----------LSPVMIPPPRHPSSSLLPR 72
+P D T S IHS + SP+ + P H S
Sbjct: 12 QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71
Query: 73 LPHSPSDAF--PPPSPTTTTTTTSLGDFSDDVTAASSPPS 110
H PS A P P T++ + +G D SSP S
Sbjct: 72 YGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS 111
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.1 bits (80), Expect = 0.10
Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 22/174 (12%)
Query: 1 MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQS-------DPPDPIHSTPLADASSPGNF 53
+D + + + K+ ++ + + P +S D D + +PL D+ S
Sbjct: 1445 IDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAM 1504
Query: 54 LSPVMIPPPRHPSSSLLPRLPHSP----------SDAFPPPSPTTTTTTTSLGDFSDDVT 103
+ P + S F P SPT + T+ + S +
Sbjct: 1505 AGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYS 1564
Query: 104 AAS---SPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPAS 154
S SP S + + +S + S+ P+ +PS P S
Sbjct: 1565 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTS 1616
Score = 30.4 bits (68), Expect = 2.2
Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 19/135 (14%)
Query: 34 DPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRL-----PHSP-----SDAFPP 83
P P +S P + + SP + S P P+S P SP S ++ P
Sbjct: 1571 SPTSPSYS-PTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628
Query: 84 PSPTTTTTTTSLGDFSDDVTAAS---SPPSAAAAAARVRGRGSSVKQQGAASSF-PGGGF 139
SP+ + T+ S S + S SP S A + +S + S+ P
Sbjct: 1629 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1688
Query: 140 EVPPSVKAPSSVPAS 154
P S P+ P S
Sbjct: 1689 YSPTS---PNYSPTS 1700
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A
{Saccharomyces cerevisiae} SCOP: b.86.1.2
Length = 237
Score = 32.1 bits (72), Expect = 0.40
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 436 KIILADRVIVKHAVTKIRDGD-VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG 494
+++AD I + I G+ V+ G V + + + + + VV H+
Sbjct: 17 NVLMADGSIEC--IENIEVGNKVMGKDGRPREVIKLPRGSETM---YSVVQKSQHRAHKS 71
Query: 495 KLLLRRLVRKGLSCTYTHI 513
+C TH
Sbjct: 72 DSSREMPELLKFTCNATHE 90
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 32.6 bits (74), Expect = 0.41
Identities = 16/88 (18%), Positives = 22/88 (25%), Gaps = 3/88 (3%)
Query: 34 DPPDP-IHSTPLADASSPGNFLSPVMIPPP--RHPSSSLLPRLPHSPSDAFPPPSPTTTT 90
DP P TP A++ P PP + + PP P
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 91 TTTSLGDFSDDVTAASSPPSAAAAAARV 118
T + G + A V
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYV 88
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle,
structural genomics, PSI, structure initiative; 1.91A
{Porphyromonas gingivalis} SCOP: d.360.1.1
Length = 120
Score = 30.2 bits (68), Expect = 0.68
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 15/69 (21%)
Query: 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR-- 525
+ + H +E K R +++ + + RL + I Y
Sbjct: 14 RVFMHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQ----------IPYFAQPTPNTE 63
Query: 526 ---VFLGAS 531
+F G
Sbjct: 64 RTNLFFGCK 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.93
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 199 ERRAIQEAQRAAKAAAKAEGIKTP-AATALA-NA 230
E++A+++ Q + K A +A ALA A
Sbjct: 18 EKQALKKLQASLKLYA-------DDSAPALAIKA 44
Score = 28.8 bits (63), Expect = 3.1
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 3/19 (15%)
Query: 144 SVK--APSSVPASGL-TTV 159
S+K A S PA + T+
Sbjct: 28 SLKLYADDSAPALAIKATM 46
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 31.4 bits (70), Expect = 1.0
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 15/129 (11%)
Query: 20 FFTNAP--LPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSP 77
F N P D + PP P S P ++S +P
Sbjct: 14 FMANLPNGYMTDLQRPQPPPPPPSAASPG-------------ATPGSAAASAERASTAAP 60
Query: 78 SDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGG 137
+ PSP ++ S+ V ++ +A + G G + + AA
Sbjct: 61 VASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVI 120
Query: 138 GFEVPPSVK 146
K
Sbjct: 121 DEPHTDWAK 129
Score = 28.7 bits (63), Expect = 6.3
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 2/99 (2%)
Query: 70 LPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQ-- 127
L R P T + + + + +SP + + ++ G SS+
Sbjct: 26 LQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSNAV 85
Query: 128 QGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPP 166
+ ++ E + + + V+ P
Sbjct: 86 KQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPH 124
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 31.0 bits (71), Expect = 1.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFINEK 436
+ V+MGNA +K + A I+L+ E A+A IER N +
Sbjct: 234 MGVAMGNAQEPVK-KAADY-ITLTNDEDGVAEA-----IERIFNVE 272
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVE---MILQHAHELGKQFRVVIVD 487
D I++ ++ D+ L G+SS V M G V +
Sbjct: 199 DPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGV--PVAEFN 246
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 31.1 bits (70), Expect = 1.2
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFL---SPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P RT + ++ SS ++L +P ++P R D
Sbjct: 6 PALRTGDRDT---RLSFGSNLSSFTDYLRGHAPELLPENRIG----HRSHSTRGGDGMES 58
Query: 84 PSPTTTTTTT 93
TT
Sbjct: 59 GDLAPHGTTI 68
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 30.7 bits (69), Expect = 1.2
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 428 DIERFINEKIILADRVIVKHAVTKI----RDGDV-LLTYG---SSSAVEMILQHAHELGK 479
++E F ++++ +R ++ ++ + V LL G ++ I A G
Sbjct: 57 EMEEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERKGV 116
Query: 480 QFRVV 484
+ R++
Sbjct: 117 KTRII 121
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFINEK 436
S ++ NA K AK + +S E A +++ + K
Sbjct: 261 YSFAVANATDSAK-SHAKCVLPVSHREGAVAYL-----LKKVFDLK 300
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific
recombinase, resolvase, DNA-binding protein, protein-DNA
complex, DNA integration, DNA invertase, DNA
recombination; 3.20A {Staphylococcus aureus}
Length = 209
Score = 30.4 bits (69), Expect = 1.4
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 199 ERRAIQEAQRAAKAAAKAEGIK 220
ER + Q AK +G+
Sbjct: 124 ERNESKRRQAQGIQVAKEKGVY 145
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 30.6 bits (70), Expect = 1.4
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFINEKI 437
L V+MGNA+ +K + A ++ S E A ++ + +
Sbjct: 239 LGVAMGNAVPEIK-RKADW-VTRSNDEQGVAYM-----MKEYFRMQQ 278
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 181
Score = 29.9 bits (67), Expect = 1.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 202 AIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPS 239
A++ A RAA A +A T A +T P
Sbjct: 137 AVETAVRAAIAVNEAPVGDTGVTAAAGRRGAAAATEPM 174
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 30.6 bits (69), Expect = 1.6
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 184 RALNSKPLKEKTSKAERRAIQEAQRAAK----AAAKA--EGIKTPAATALANAKPTKSTR 237
+ + +TS+ ER I E R + +++ EGI P A + S R
Sbjct: 367 KVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAR 426
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.8 bits (69), Expect = 1.6
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 183 DRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALAN 229
D L + S ++A++ QR + G+ A+A+
Sbjct: 897 DHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIAS 943
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 30.8 bits (69), Expect = 1.7
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 1 MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDP--PDPIHSTPLADASSPGNFL--SP 56
M +RRS K ++ + +P PD H DA PG
Sbjct: 14 MGNRRSDEPAKTKK-----GLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGG 68
Query: 57 VMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSD 100
V +P + P SP + + D
Sbjct: 69 VGMPSRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGD 112
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 30.2 bits (69), Expect = 1.8
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFINEKI 437
L V+M NAI +K + + I ++L+ ++ + +ER + +
Sbjct: 227 LRVAMENAIEKVK-EASDI-VTLTNNDSGVSYV-----LERISTDCL 266
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.5 bits (67), Expect = 2.0
Identities = 12/125 (9%), Positives = 24/125 (19%)
Query: 30 RTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTT 89
R + PP SP P A PP
Sbjct: 12 RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
Query: 90 TTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPS 149
+ + S + + + ++ E+ ++
Sbjct: 72 LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAR 131
Query: 150 SVPAS 154
+ A
Sbjct: 132 ELGAR 136
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 29.8 bits (68), Expect = 2.4
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 11/47 (23%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFI-NEK 436
+ V++ NAI +K ++A ++ S E A A IE+++ NE
Sbjct: 235 VGVAVDNAIPSVK-EVANF-VTKSNLEDGVAFA-----IEKYVLNEG 274
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex,
double helix, overhanging base, DNA binding protein/DNA
complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1
PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Length = 183
Score = 29.5 bits (67), Expect = 2.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 199 ERRAIQEAQRAAKAAAKAEGIK 220
ER+ I E + A A+G+
Sbjct: 118 ERQRILERTNEGRQEAMAKGVV 139
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.7 bits (65), Expect = 2.9
Identities = 14/133 (10%), Positives = 26/133 (19%)
Query: 54 LSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAA 113
P P +L P PP + + T
Sbjct: 16 PEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTP 75
Query: 114 AAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAG 173
+ + Q A + PG + + +V + G
Sbjct: 76 SQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRL 135
Query: 174 GSVSVEVQSDRAL 186
+ +A
Sbjct: 136 DLPPGFMFKVQAQ 148
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/149 (11%), Positives = 30/149 (20%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP 84
+ + L + S PV PP PS + S + P
Sbjct: 9 EIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVP 68
Query: 85 SPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPS 144
+ TT + + + SS +FP
Sbjct: 69 EISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEG 128
Query: 145 VKAPSSVPASGLTTVSVVKLPPGISENAG 173
+ V + +
Sbjct: 129 GSGAGRLDLPPGFMFKVQAQHDYTATDTD 157
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 29.9 bits (68), Expect = 2.9
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 200 RRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPS 239
+ QEA K E + A TK R S
Sbjct: 213 KLVFQEAC----RILKLENEEKAWERVQAVCGQTKENRSS 248
>2gm5_A Transposon gamma-delta resolvase; site specific recombination,
recombin; 2.10A {Escherichia coli} PDB: 2rsl_A 1gdr_A
1ght_A 1hx7_A
Length = 139
Score = 28.6 bits (65), Expect = 3.0
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 199 ERRAIQEAQRAAKAAAKAEG 218
ER+ I E + A
Sbjct: 117 ERQRILERTNEGRQEAMHHH 136
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 29.5 bits (65), Expect = 3.7
Identities = 9/70 (12%), Positives = 18/70 (25%)
Query: 22 TNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAF 81
+ +R S P ++ ++ P P R S P S +
Sbjct: 243 YQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASV 302
Query: 82 PPPSPTTTTT 91
+ +
Sbjct: 303 EYHAGMKSLN 312
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 29.0 bits (66), Expect = 4.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFI 433
L V+MGNAI +K + A+ ++L+ +E A A I ++
Sbjct: 234 LGVAMGNAIDEVK-EAAQA-VTLTNAENGVAAA-----IRKYA 269
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.5 bits (66), Expect = 4.3
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 414 ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473
++ E+ ++ + K++ ++ + A +V+ + S+ +E I
Sbjct: 74 VTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYA 133
Query: 474 AHELGKQFRVVIVDS 488
+ + RV I DS
Sbjct: 134 IQKYRAR-RVSI-DS 146
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 28.7 bits (65), Expect = 4.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 199 ERRAIQEAQRAAKAAAKAEGIK 220
ER I E A AAA+ +G
Sbjct: 115 ERELIIERTMAGLAAARNKGRI 136
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 29.3 bits (65), Expect = 4.8
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 19 GFFTNAPLPPDRTQSDPPDPIHSTPLADASSPG-NFLSPVMIP--PPRHPSSSLLPRLP- 74
GF L P +++P + A SPG SP P P S + +P P
Sbjct: 1518 GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPS 1577
Query: 75 HSP-SDAFPPPSPT 87
+SP S ++ P SP+
Sbjct: 1578 YSPTSPSYSPTSPS 1591
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 28.8 bits (65), Expect = 5.9
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVE---MILQHAHELGKQFRVVIVD 487
++K A +I D+LL G+SS V + A + K ++V ++
Sbjct: 203 SSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKK--KIVEIN 250
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 28.7 bits (65), Expect = 6.0
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 21 FTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLP 74
F P PD + P + P+ P PP+H S + PR+P
Sbjct: 1 FPQLPPAPDDYPTFPDTS--TWPVVFPELPAAPYGGP-CRPPQHTSKAAAPRIP 51
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage
pathway, translation initiation, oxidoreductase; 1.75A
{Saccharomyces cerevisiae} SCOP: c.124.1.5
Length = 211
Score = 28.5 bits (64), Expect = 6.4
Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 23/146 (15%)
Query: 352 IAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAK 411
+ D +T + ++ + FL+ RP +V++ N++ +K+ +
Sbjct: 66 TEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKS 125
Query: 412 IP-----ISLSESEAKATLHSDIERFINEKI-ILADRVIVKHAVTKI-RDGDVLLT---- 460
+ + D+ N K+ + ++ +D +LT
Sbjct: 126 SSDLKAFDGSLYNYVCELIDEDLA--NNMKMGDNGAKYLIDVLQKDGFKDEFAVLTICNT 183
Query: 461 -------YGSSSAVEMILQHAHELGK 479
YG++ V ++ +
Sbjct: 184 GSLATSGYGTALGV---IRSLWKDSL 206
>1hcn_B Human chorionic gonadotropin; hormone; HET: NAG; 2.60A {Homo
sapiens} SCOP: g.17.1.4 PDB: 1hrp_B* 1qfw_B*
Length = 145
Score = 27.7 bits (61), Expect = 6.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 61 PPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGD 97
P HP + PR S S PPPS + + D
Sbjct: 103 PKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSD 139
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 28.2 bits (62), Expect = 7.5
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 428 DIERFINEKIILADRVIVKHAVTKI----RDGDV-LLTYG---SSSAVEMILQHAHELGK 479
+E F +K+I+ DR +V+ +I + +V LL G ++ I ++G
Sbjct: 65 KLEEFYGKKVIIGDRDLVETEADQILEPAKTKNVALLVVGDVYGATTHSDIFVRCQKMGI 124
Query: 480 QFRVV 484
+ +V+
Sbjct: 125 EVKVI 129
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT;
invasin, intimin, adhesion vaccination, bacterial
immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Length = 414
Score = 28.7 bits (63), Expect = 7.8
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Query: 78 SDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGG 137
S A S + T G ++ ++ + ++ G+ ++
Sbjct: 134 SGAAAAGSTASGWTDNGDGTWTAQIS-LGTTAGELDVMPKLNGQDAAANAAKVTVVADAL 192
Query: 138 GFEVPPSVKAPSSVPASGLTTVSVV 162
A V A TTV++V
Sbjct: 193 SSNQSKVSVAEDHVKAGESTTVTLV 217
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 28.3 bits (64), Expect = 8.9
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 394 LSVSMGNAIRFLKSQIAKIPISLSESE---AKATLHSDIERFI 433
M NA + LK ++ + S ++ + + +
Sbjct: 246 KGCIMANAHQRLKDLHPELEVIGSNADDAVPRY-----LRKLY 283
>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis,
DOM-fold, amidohy transferase; 1.60A {Streptomyces
cattleya}
Length = 419
Score = 28.3 bits (62), Expect = 9.5
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 64 HPSSSLLPRLPHSPSDAFPPPSPTTTT 90
H SS L+PR H +A
Sbjct: 9 HHSSGLVPRGSHMDPEAGSRARGLKGV 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,914,386
Number of extensions: 610395
Number of successful extensions: 1917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 120
Length of query: 658
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 558
Effective length of database: 3,909,693
Effective search space: 2181608694
Effective search space used: 2181608694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)