Your job contains 1 sequence.
>006165
MAAKNRPETNKPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKPF
KSELQKTDGNKEKNQSLTKRELRLRAKELAEARKKKRKRHYDLELELASLWEKMRQRNIA
KETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLAD
NTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELL
VELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHR
VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKG
HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPN
CSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAEN
LPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDI
LRPTLDDKLNTLHETIASLASESKSEASEEEHVLENFHSSRTIRKLVMDCPKFASTLWKN
ALKGKSEFWAQGHSCKVVTAFLESSDFKVRELAKTELQPLIDSGSLKIPEAKQLPKEV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006165
(658 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 1685 2.1e-173 1
UNIPROTKB|E2RBF2 - symbol:KIAA0020 "Uncharacterized prote... 491 3.0e-55 3
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 500 4.2e-53 2
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 496 7.6e-53 3
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 502 8.7e-51 2
UNIPROTKB|A2VDN9 - symbol:KIAA0020 "Uncharacterized prote... 491 1.1e-50 2
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 492 2.3e-50 2
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 475 2.6e-49 2
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 479 4.2e-49 2
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 438 1.3e-46 2
POMBASE|SPCP1E11.11 - symbol:puf6 "Puf family RNA-binding... 412 5.7e-41 2
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 384 1.7e-36 3
SGD|S000002904 - symbol:PUF6 "Pumilio-homology domain pro... 380 6.9e-35 2
WB|WBGene00014165 - symbol:puf-12 species:6239 "Caenorhab... 395 7.0e-34 2
ASPGD|ASPL0000058629 - symbol:AN10173 species:162425 "Eme... 319 1.1e-31 2
UNIPROTKB|G4MRT4 - symbol:MGG_13803 "Uncharacterized prot... 324 5.8e-31 2
FB|FBgn0015527 - symbol:pen "penguin" species:7227 "Droso... 331 6.4e-27 2
UNIPROTKB|F1NWW8 - symbol:KIAA0020 "Uncharacterized prote... 293 1.2e-22 3
UNIPROTKB|I3LI55 - symbol:I3LI55 "Uncharacterized protein... 260 2.7e-19 2
UNIPROTKB|D4A5Q5 - symbol:D4A5Q5 "Uncharacterized protein... 178 1.1e-12 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 154 2.7e-06 3
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 134 3.2e-05 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 124 3.9e-05 1
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 133 5.1e-05 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 129 0.00015 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 126 0.00023 1
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 126 0.00042 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 124 0.00053 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 123 0.00064 1
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 124 0.00065 1
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 124 0.00065 1
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 124 0.00069 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 123 0.00073 1
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 123 0.00073 1
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 123 0.00078 1
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 123 0.00078 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 123 0.00078 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 123 0.00078 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 121 0.00088 1
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
Identities = 356/649 (54%), Positives = 450/649 (69%)
Query: 11 KPVKRIFAKTEPSNPASKKPKLAGSKPSEVS-QSKDFKKPFNPDKRKQKPFKSELQKTDG 69
KP K K + ++ ++K L KP VS + + KP + KP K+ G
Sbjct: 7 KPQKS--TKRKDTDSSAKFDSLKSKKPKLVSGEQQQHVKP-----KFGKP------KSAG 53
Query: 70 NKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKETRSKLIS 129
+KE++ +L+ HY+LE EL SLWEKMR+RNI KE RSKLIS
Sbjct: 54 DKEQSTNLSKKERRVQAKELTEARKKKRKPHYNLEQELVSLWEKMRRRNIGKEDRSKLIS 113
Query: 130 EALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVK 189
EA++KMKGK+PEIA SHVSSRVLQTCVK+CSQAE+D +F ELQP FL+LA N YAVH ++
Sbjct: 114 EAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQ 173
Query: 190 KMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQ 249
KMLD ASK+QLA IS+L GHVA LLRH+ GS+VVEHAY LG+A QKQELL ELYSTELQ
Sbjct: 174 KMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQ 233
Query: 250 LFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMA 309
LFK L + E +VD+I+KLGLQK +V RHM ++IQPILEKGI+DH+I H++L+EYL++A
Sbjct: 234 LFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEYLTIA 293
Query: 310 DKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQ 369
DK+SAAD++Q L+G LL+RM+HTRDGS++ ML +KHGSAKER +A DQ
Sbjct: 294 DKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKMAFDQ 353
Query: 370 CGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYXXXXX 429
GSMVL CI SIVDDTKL+ KII+REL++ +K+LVMDKNGRR LLQLLHPN SRY
Sbjct: 354 FGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPLLQLLHPNSSRYLSHDD 413
Query: 430 XXXXXXXXXXXCAKEGSEVNSEAKN---NESSKEMADQEVVAVQADESTSPAENLPLAEG 486
C+ + SE +S+ K+ NE +E D++ V E + EN+ A G
Sbjct: 414 LAALDLSVPSLCSMDKSETSSKTKDTDGNEIGEETKDEQEDTVA--EHSDHEENVT-AMG 470
Query: 487 GKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 546
GKKDP VRRQELLV+SGLAE +IDVC+ENA E L+S FG EV+YEVA GGSD IL P+L
Sbjct: 471 GKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKFGNEVMYEVAIGGSDGILCPSLS 530
Query: 547 DKLNTLHETIXXXXXXXX--XXXXXXXHVLENFHSSRTIRKLVMDCPKFASTLWKNALKG 604
+KL L+E I H+LENFHSSRTIR+LV++ P FAS L+K AL G
Sbjct: 531 EKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRTIRRLVLNRPGFASILFKKALSG 590
Query: 605 KSEFWAQGHSCKVVTAFLESSDFKVRELAKTELQPLIDSGSLKIPEAKQ 653
K WAQGH K+++AF+E+ D +VRE+AKTELQ L++ G+LKI K+
Sbjct: 591 KCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLKISATKK 639
>UNIPROTKB|E2RBF2 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:AAEX03000606
EMBL:AAEX03000607 Ensembl:ENSCAFT00000003228 Uniprot:E2RBF2
Length = 648
Score = 491 (177.9 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 107/324 (33%), Positives = 189/324 (58%)
Query: 100 HYDLELELASLWEKMRQRNIAKETRSKLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKY 158
+YD+ + +WE +R+++ KE R KL+S+ LQK+ +GKI IA +H S+RV+Q ++Y
Sbjct: 131 NYDIVVRAKQIWETLRRKDCDKEKRVKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQY 189
Query: 159 CSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHM 218
++ +R+ FEEL+ F+ L+ Y+ ++VKK L SK Q+A + + GHV +LRH
Sbjct: 190 GNEEQREQAFEELRDDFVQLSKAKYSRNIVKKFLMYGSKPQIAEIMRSFKGHVRKMLRHA 249
Query: 219 VGSVVVEHAYQLGNATQKQELLVE-LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-V 276
S +VE+AY +++ +L E LY QL+K+ + +D + + +K +
Sbjct: 250 EASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSA----DHPTLDKVLETQPEKLDLI 305
Query: 277 LRHMASVIQPILEK-GIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDG 335
+ M ++ P+ +K +I HS++H+V +++ + A +++I+ + ++ + HT DG
Sbjct: 306 MDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIR-EAVIYLAHTHDG 364
Query: 336 SKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRE 395
+++ M C+ HG+ K+R VA+ Q +VLL +DDTKL+ +III E
Sbjct: 365 ARVAMHCLWHGTPKDRKVIVKTMKTYIEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISE 424
Query: 396 LQSIIKELVMDKNGRRVLLQLLHP 419
+ + + +V DK GR+VLL LL P
Sbjct: 425 IINSLPNIVNDKYGRKVLLYLLSP 448
Score = 54 (24.1 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 8 ETNKPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKK-PFNPDKRKQKPFKSELQK 66
+T++ KR F K S + P+ + SK+F+K P K+ K FK++ Q
Sbjct: 16 KTSQEKKR-FHKNSDSGSSKTFPRKVVKEGGPKITSKNFEKCAIKPGKKGVKQFKNKQQG 74
Query: 67 TDGNKEKNQ 75
K K Q
Sbjct: 75 DKIPKNKFQ 83
Score = 54 (24.1 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 35/164 (21%), Positives = 69/164 (42%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 547
KKD +RR+ELL S ++ +++ +A E++ ++ ++ D+ +P +D
Sbjct: 472 KKDTAIRRRELLES--ISPALLSYLQGHAQEVVLDKSACVLVSDILGAAIGDV-QPAMD- 527
Query: 548 KLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPK---------FASTLW 598
+ +L T H+ E+ ++ L+ K FA TL
Sbjct: 528 AIASLAAT-----ELHPGGKDGELHIAEHPAGHLVLKWLIEQDEKMKESGREGCFAKTLI 582
Query: 599 KNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
++ + WA ++++ L+SSD +V K L+ LI
Sbjct: 583 EHVGMKNLKSWASVNRGAILLSSLLQSSDHEVAHKIKAGLKGLI 626
Score = 38 (18.4 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 629 VRELAKTELQPLIDSGSLKIPE 650
+ LA TEL P G L I E
Sbjct: 529 IASLAATELHPGGKDGELHIAE 550
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 500 (181.1 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 131/428 (30%), Positives = 224/428 (52%)
Query: 1 MAAKNRPE-TNKPVKRIFAKTEPSNPASKKPKLAGSK-PSEVSQ-SKDF--KKPFNPDKR 55
+A + P+ T++ ++ K K K G K P Q + F K+ F PD R
Sbjct: 40 VAKEGGPKVTSRNFEKSITKLGKKGVKQFKNKQQGDKSPKNKFQPANKFNKKRKFQPDGR 99
Query: 56 KQKPFKSELQKTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMR 115
+ ++ K D K+K + L +YD+ + +WE +R
Sbjct: 100 SDES-AAKKPKWDDFKKKKKELKQSRQLSDKT------------NYDIVVRAKQMWEILR 146
Query: 116 QRNIAKETRSKLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPH 174
+++ KE R KL+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R FEEL+
Sbjct: 147 RKDCDKEKRVKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDD 205
Query: 175 FLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNAT 234
+ L+ Y+ ++VKK L SK Q+A I + GHV +LRH S +VE+AY
Sbjct: 206 LVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAIL 265
Query: 235 QKQELLVE-LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILEK-G 291
+++ +L E LY QL+K+ + R +D + ++ +K ++ M ++ P+ +K
Sbjct: 266 EQRNMLTEELYGNTFQLYKSA----DHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEA 321
Query: 292 IIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKER 351
+I HS++H+V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+R
Sbjct: 322 VIKHSLVHKVFLDFFTYAPPKLRSEMIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDR 380
Query: 352 XXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRR 411
VA+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+
Sbjct: 381 KVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRK 440
Query: 412 VLLQLLHP 419
VLL LL P
Sbjct: 441 VLLYLLSP 448
Score = 67 (28.6 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 36/164 (21%), Positives = 71/164 (43%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 547
KKD VRR+ELL S ++ +++ E+A E++ ++ ++ + D+ +PT++
Sbjct: 472 KKDTEVRRRELLES--ISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDV-QPTMN- 527
Query: 548 KLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPK---------FASTLW 598
+ +L T H+ E+ ++ L+ K FA TL
Sbjct: 528 AIASLAAT-----GLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLV 582
Query: 599 KNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
++ + WA ++++ L+S D +V K L+ LI
Sbjct: 583 EHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLI 626
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 496 (179.7 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
Identities = 117/421 (27%), Positives = 219/421 (52%)
Query: 6 RPETNKPVKRIFAK-TEPSNPAS--KKPKLAGSKPSEVSQSKDFKKPFNPDK-RKQKPFK 61
+ + + P+K +K E P S KKP +P S K FK +K K++ ++
Sbjct: 30 KDDDSVPLKTFHSKGDEEEKPKSISKKPVKGNLRPGRASV-KQFKNKQQSEKLAKKRRYQ 88
Query: 62 SELQ-KTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIA 120
Q ++D K K +YD+ ++ +WE +R++
Sbjct: 89 DSTQGESDSKKPKWDDFKKKKKELKQSRQLNDRS-----NYDIIVKSKQIWESVRRKKCD 143
Query: 121 KETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLAD 180
KE R KL++E + + GKI +A +H S+RV+Q ++Y + +R FEEL+ + L+
Sbjct: 144 KEKREKLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSK 203
Query: 181 NTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELL 240
+ Y+ ++VKK L +K+Q+A I + GHV +LRH S VVE+AY +++ +L
Sbjct: 204 SKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNML 263
Query: 241 VE-LYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEK-GIIDHSII 298
E LY Q++K + ++++ + ++ ++L M ++ P+ +K +I HS++
Sbjct: 264 TEELYGNTFQVYKTPIVPTLDKVLEAQPE---KREAILDEMKQILTPMAQKEAVIKHSLV 320
Query: 299 HRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX 358
H+V +++ + A +++I+ + ++ + HT DG+++ M C+ HG+ K+R
Sbjct: 321 HKVFLDFFTHALPKQRSEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTM 379
Query: 359 XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLH 418
+A + +VLL +DDTKL+ ++II EL + + L+ +K+G++VLL LL
Sbjct: 380 KTYIEKIATGEFSHLVLLAAFDCIDDTKLVKQLIITELNASLPSLISNKHGKKVLLYLLS 439
Query: 419 P 419
P
Sbjct: 440 P 440
Score = 41 (19.5 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 388 IAKIIIRELQSIIKELVMDK 407
I+ ++ LQ I+E+VMDK
Sbjct: 478 ISPPLLEYLQEHIQEIVMDK 497
Score = 39 (18.8 bits), Expect = 7.6e-53, Sum P(3) = 7.6e-53
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 609 WAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
WA+ V+ L S+D KV K L+ ++
Sbjct: 585 WAEVNRGAIVLCCLLRSTDQKVTNAVKKGLKKIV 618
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 502 (181.8 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 129/402 (32%), Positives = 214/402 (53%)
Query: 23 SNPASKKPKLAGSKPSEVSQSKD-FKKPFNPDKRKQKPFKSELQKTDGNKEKNQSLTXXX 81
+ P K+ K +KP KD F+K N +K+K F+ + K+D + K
Sbjct: 57 TKPGKKRVKQFKNKPQGGKGPKDKFQKA-NKFNKKRK-FQPD-GKSDESAAKKPKWDDFK 113
Query: 82 XXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKETRSKLISEALQKM-KGKIP 140
+YD+ + +WE +R+++ KE R KL+S+ LQK+ +GKI
Sbjct: 114 KKKKELKQNRQLSDKT--NYDVVVRAKHIWESLRRKDCDKEKRVKLMSD-LQKLIQGKIK 170
Query: 141 EIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQL 200
IA +H S+RV+Q ++Y S+ +R FEELQ + L+ Y+ ++VKK L SK Q+
Sbjct: 171 TIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQI 230
Query: 201 AGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LYSTELQLFKNLVSIKE 259
A I + GHV +LRH S +VE+AY +++ +L E LY QL+K+
Sbjct: 231 AEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTL 290
Query: 260 SRLVDVI-SKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHRVLMEYLSMADKSSAADI 317
++++V KL L +L M ++ P+ +K +I HS++H+V +++ + A +++
Sbjct: 291 EKVLEVQPGKLEL----ILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEL 346
Query: 318 IQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLC 377
I+ + +V + HT DG+++ M C+ HG+ K+R +A+ Q +VLL
Sbjct: 347 IEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVLLA 405
Query: 378 IVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419
+DDTKL+ +III E+ S + +V DK GR+VLL LL P
Sbjct: 406 AFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSP 447
Score = 43 (20.2 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 488 KKDPRVRRQELLVS 501
KKD +RR+ELL S
Sbjct: 471 KKDTAIRRRELLES 484
>UNIPROTKB|A2VDN9 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 CTD:9933
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:DAAA02022736 EMBL:BC133332 EMBL:BT030563 IPI:IPI00693374
RefSeq:NP_001091499.1 UniGene:Bt.24626 STRING:A2VDN9
Ensembl:ENSBTAT00000017765 GeneID:514957 KEGG:bta:514957
InParanoid:A2VDN9 NextBio:20871591 Uniprot:A2VDN9
Length = 647
Score = 491 (177.9 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 128/410 (31%), Positives = 218/410 (53%)
Query: 20 TEPSNPASK--KPKLAGSK-P-SEVSQSKDF--KKPFNPDKRKQKPFKSELQKTDGNKEK 73
T+P K K K G + P ++ Q+ F K+ F PD + + ++ K D K+K
Sbjct: 57 TKPGKKGVKQFKNKQQGDRIPKNKFQQANKFNQKRKFQPDSKSDES-AAKKPKWDEFKKK 115
Query: 74 NQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKETRSKLISEALQ 133
+ L +YD+ + +WE +R+++ KE R KL+S+ LQ
Sbjct: 116 KKELKQSRQLSDKT------------NYDIVIRAKQIWEILRRKDCDKEKRVKLMSD-LQ 162
Query: 134 KM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKML 192
K+ +GKI IA +H S+RV+Q +++ ++ +R FEEL+ + L+ Y+ ++VKK L
Sbjct: 163 KLIQGKIKTIAFAHDSTRVIQCYIQFGNEEQRKQAFEELRGDLVELSKAKYSRNIVKKFL 222
Query: 193 DNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LYSTELQLF 251
SK Q+A I + GHV LLRH S +VE+AY +++ +L E LY QL+
Sbjct: 223 MYGSKAQIAEIIRSFKGHVRKLLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLY 282
Query: 252 KNLVSIKESRLVDVI-SKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHRVLMEYLSMA 309
K+ ++++V KL L ++ M ++ P+ +K +I HS++H+V +++ + A
Sbjct: 283 KSADHPTLDKVLEVQPEKLEL----IMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYA 338
Query: 310 DKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQ 369
+++I+ + +V + HT DG+++ M C+ HG+ K+R VA+ Q
Sbjct: 339 PPKLRSEMIEAIR-EAVVYLAHTHDGARVAMYCLWHGTPKDRKVIVKTMKTYIEKVANGQ 397
Query: 370 CGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419
+VLL +DDTKL+ +III E+ + + +V DK GR+VLL LL P
Sbjct: 398 YSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSP 447
Score = 53 (23.7 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 31/160 (19%), Positives = 68/160 (42%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 547
KKD +RR+ELL S ++ +++ +A E++ ++ ++ + D+ +P +D
Sbjct: 471 KKDTEIRRRELLES--ISPALLSYLQGHAQEVVLDKSACVLVADILGTATGDV-QPAMDA 527
Query: 548 KLNTLHETIXXXXXXXXXXXXX--XXHVLENF--HSSRTIRKLVMD-CPKFASTLWKNAL 602
+ + H++ + + +++ + C FA TL +
Sbjct: 528 VASLAAAELHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKERGREGC--FAKTLIERVG 585
Query: 603 KGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
+ WA ++++ L+SSD +V K L+ LI
Sbjct: 586 VKNLKSWASVNRGAIILSSLLQSSDQEVANKVKAGLKSLI 625
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 492 (178.3 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 123/402 (30%), Positives = 212/402 (52%)
Query: 23 SNPASKKPKLAGSKPSEVSQSKD-FKKPFNPDKRKQKPFKSELQKTDGNKEKNQSLTXXX 81
+ P K K +KP KD F+K N +K+K F+ + + + +K +
Sbjct: 57 TKPGKKGVKQFKNKPQGGKGPKDKFQKA-NKFSKKRK-FQPDGESDESGAKKPK---WDD 111
Query: 82 XXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKETRSKLISEALQKM-KGKIP 140
+YD+ + +WE +R+++ KE R KL+S+ LQK+ +GKI
Sbjct: 112 FKKKKKELKQSRQLSDKTNYDIVVRAKHIWESLRRKDCDKEKRVKLMSD-LQKLIQGKIK 170
Query: 141 EIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQL 200
IA +H S+RV+Q ++Y ++ +R F+ELQ + L+ Y+ ++VKK L SK Q+
Sbjct: 171 TIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQV 230
Query: 201 AGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LYSTELQLFKNLVSIKE 259
A I + GHV +LRH S +VE+AY +++ +L E LY QL+K+ +
Sbjct: 231 AEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSA----D 286
Query: 260 SRLVDVISKLGLQKAS-VLRHMASVIQPILEK-GIIDHSIIHRVLMEYLSMADKSSAADI 317
+D + +L K ++ M ++ P+ +K +I HS++H+V +++ + A +++
Sbjct: 287 HPTLDKVLELQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPRSEL 346
Query: 318 IQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLC 377
I+ + +V + HT DG+++ M C+ HG+ K+R VA+ Q +VLL
Sbjct: 347 IEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLA 405
Query: 378 IVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419
+DDTKL+ +III E+ S + +V DK GR+VLL L+ P
Sbjct: 406 AFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSP 447
Score = 49 (22.3 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 593 FASTLWKNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
FA TL + + WA ++++ L+S D +V K L+PLI
Sbjct: 576 FAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLI 625
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 475 (172.3 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 123/420 (29%), Positives = 209/420 (49%)
Query: 3 AKNRPETNKPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKPFKS 62
+K +P KR F +P N + K K E K +KP + K++ F
Sbjct: 22 SKGKPGGKPQGKRPF---KPHN--NDKGKGFRKSGGEGGPQKFNRKPTDGKFAKKRKFPG 76
Query: 63 ELQKTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKE 122
+ K + E+ + Y + +WE +R+++ K+
Sbjct: 77 DRIKQEEGDERKKPKWDEFKQKKKELKLNRQQTDRKESYQIVSRAKQVWEMVRRKDCDKQ 136
Query: 123 TRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNT 182
R+KL+ E +KGKI IA +H S+RVLQ +++ S +R VF+EL+ H + L+ +
Sbjct: 137 KRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSK 196
Query: 183 YAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV- 241
YA ++VKK L SK+Q+ + A G V +LRH S VVE+AY A Q L++
Sbjct: 197 YARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYN-DKAILSQRLMLT 255
Query: 242 -ELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEK-GIIDHSIIH 299
ELY + K+ V ++++ + G + S+L M ++ P+ +K +I HS++H
Sbjct: 256 EELYGNTFTVLKSSVCPTLEKVLE--ANPG-KLESILDEMKQILTPMAQKEAVIKHSLVH 312
Query: 300 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXX 359
+V +++ A ++I+ + +V M HT DG+++ M C+ HG+ K+R
Sbjct: 313 KVFLDFFEHAPDKQRTEMIESIR-EAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMK 371
Query: 360 XXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419
A + +VLL +DDTKL+ +III E+ S + E++ +K+G++VLL LL P
Sbjct: 372 SYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSP 431
Score = 56 (24.8 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 546
KKD +RR+ELL ++ + S+++ ENA ++ V+ ++ D LRP ++
Sbjct: 455 KKDVLIRRKELLEAA--SPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-LRPAME 510
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 479 (173.7 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 131/429 (30%), Positives = 223/429 (51%)
Query: 2 AAKNRPETNKPVKRIFAKTEPSN--PASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKP 59
++K P+ K VK K N ++ KP G K + Q D K P N ++ K
Sbjct: 31 SSKTFPQ--KVVKEGEPKITSKNFEKSATKPGKKGVKQFKNKQQGD-KIPKNKFQQGNK- 86
Query: 60 F--KSELQ---KTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKM 114
F K ++Q K DG+ K +YD+ + +WE +
Sbjct: 87 FNRKRKIQPDSKNDGSAAKKPKWDEFKKKKKELKQSRQLSDKA--NYDIVVRAKQIWEIL 144
Query: 115 RQRNIAKETRSKLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQP 173
R+++ KE R KL+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R FEEL+
Sbjct: 145 RRKDCNKEKRVKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRG 203
Query: 174 HFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNA 233
+ L+ Y+ ++VKK L +K Q+A + + GHV +LRH S +VE+AY
Sbjct: 204 DLVELSKAKYSRNIVKKFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAI 263
Query: 234 TQKQELLVE-LYSTELQLFKNLVSIKESRLVDVI-SKLGLQKASVLRHMASVIQPILEK- 290
+++ +L E LY QL+K+ ++++V KL L ++ M ++ P+ +K
Sbjct: 264 LEQRNMLTEELYGNTFQLYKSADCPTLDKVLEVQPEKLEL----IMDEMKQILTPMAQKE 319
Query: 291 GIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKE 350
+I HS++H+V +++ + A +++I+ + ++ + HT DG+++ M C+ HG+ K+
Sbjct: 320 AVIKHSLVHKVFLDFFTHAPPKLRSEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKD 378
Query: 351 RXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGR 410
R VA+ Q +VLL +DDTKL+ +III E+ + + +V DK GR
Sbjct: 379 RKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGR 438
Query: 411 RVLLQLLHP 419
+VLL LL P
Sbjct: 439 KVLLYLLSP 447
Score = 50 (22.7 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 593 FASTLWKNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
FA TL ++ + WA ++++ L+SSD +V K L+ LI
Sbjct: 576 FAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSSDQEVANEVKAGLKSLI 625
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 438 (159.2 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 116/425 (27%), Positives = 210/425 (49%)
Query: 2 AAKNRPETNKPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKPFK 61
A K++ NK VK+ ++ P S K G +V + K KKP N +K K
Sbjct: 10 ATKSKSTQNKVVKKSIGDSK--KPVSTN-KGVGKDNIKVKEFKSDKKPLN-NKYNDKKNT 65
Query: 62 SELQKTDGNKEKNQSLT--XXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNI 119
+ TD E N+S ++ L +L LW K+++ +
Sbjct: 66 TTTTTTDKENESNKSNEPKKKLTKKEKREEKFEKKSKFDKNHSLVRDLKILWVKIKEIKL 125
Query: 120 AKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLA 179
+ E R+ LI + QK+KG + + H +SRV+QT +KY ++A+R+ VF+EL+ L+++
Sbjct: 126 SSEERATLIEQLTQKLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKDQELTIS 185
Query: 180 DNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAY-QLGNATQKQE 238
Y L+ K+L +++Q I +G S++ H S VVE+ + ++ + QK
Sbjct: 186 KTQYGRFLILKLLKYGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIASKLQKTH 245
Query: 239 LLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILE-KG--IID 294
++ E Y E +LFK ++ R +D I + QK ++ +++S + IL KG ++
Sbjct: 246 IIEEFYGPEYRLFKT----EQPRTLDSIVESSPQKKEPIITYLSSQLTKILSSKGERLVQ 301
Query: 295 HSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXX 354
+II +L+E+ A + D+ + L G LL+ MIH+++GS++ + + + K R
Sbjct: 302 FTIIQTLLIEFFKHASPDNCVDMSETL-GELLLPMIHSKEGSQVAYYVISYATPKTRKSI 360
Query: 355 XXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+A ++ G + L+ ++ + DDT++I K + EL ++ E + K G +L
Sbjct: 361 VKSLKDFIPKIASEEYGFLALVRLLDVTDDTQMIIKSVFNELIPVLPECSITKQGSLWIL 420
Query: 415 QLLHP 419
LL P
Sbjct: 421 HLLAP 425
Score = 75 (31.5 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 485 EGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKG--GSDDILR 542
E KKD RR+ELL + ++ +I++C + +LL S +G +VL + K G+ IL
Sbjct: 452 EISKKDRDQRRKELL--NWISPKLIELCSNHTQDLLSSQWGTKVLNQTLKNADGNKIILM 509
Query: 543 PTLDDKL 549
+ D L
Sbjct: 510 KRILDLL 516
>POMBASE|SPCP1E11.11 [details] [associations]
symbol:puf6 "Puf family RNA-binding protein Puf6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] [GO:2000766 "negative regulation of cytoplasmic
translation" evidence=ISO] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPCP1E11.11 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:2000766 eggNOG:NOG273657 KO:K14844 PIR:T41690
RefSeq:NP_588564.1 ProteinModelPortal:Q9UU76 STRING:Q9UU76
PRIDE:Q9UU76 EnsemblFungi:SPCP1E11.11.1 GeneID:2538833
KEGG:spo:SPCP1E11.11 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF NextBio:20800015 Uniprot:Q9UU76
Length = 642
Score = 412 (150.1 bits), Expect = 5.7e-41, Sum P(2) = 5.7e-41
Identities = 103/399 (25%), Positives = 195/399 (48%)
Query: 23 SNPASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKPFKSELQKTDGNKEKNQSLTXXXX 82
S+ S+ K S +E S+ +DF F + +S + + ++E + +
Sbjct: 51 SDSMSQNDKKKDSSLNE-SEDEDFAG-FGESASENDELESAESEAENDEESSSQKSNSKE 108
Query: 83 XXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQR-NIAKETRSKLISEALQKMKGKIPE 141
D L+ SLW+K+RQ+ +I E R +I+E ++ + +
Sbjct: 109 SHAQRKKLQKERKAMKPFADTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQ 168
Query: 142 IAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLA 201
+ H SRV+QTCVK+ S+ +R+ + EL ++ L + Y +L K+ + K
Sbjct: 169 LVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKMKE 228
Query: 202 GFISALHGHVASLLRHMVGSVVVEHAY-QLGNATQKQELLVELYSTELQLFKNLVS-IK- 258
+ ++G+V ++RH + VVE A+ + N Q++ L+ E Y E Q+FK+ I
Sbjct: 229 VILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQDIHI 288
Query: 259 ESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADII 318
+ L+D K + S+++++ I+ + KG I +++HR ++E+++ AD + A +++
Sbjct: 289 DKLLIDHPEK----RPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFINHADSNEAKELL 344
Query: 319 QQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCI 378
L+ L+ +HTRDGS++ M +AK+R A D G +V++
Sbjct: 345 N-LTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETAKDSYGHLVVVAA 403
Query: 379 VSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLL 417
+ DDT + K++ E + + +L DK RR+LL +L
Sbjct: 404 LDCTDDTIMTGKLLQAEFEGELLKLSADKFARRILLYVL 442
Score = 76 (31.8 bits), Expect = 5.7e-41, Sum P(2) = 5.7e-41
Identities = 43/157 (27%), Positives = 67/157 (42%)
Query: 484 AEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEV---AKGGSDDI 540
A+ KKDP VRR EL + G +I + + AG+++ + +VL + A ++
Sbjct: 467 AKTSKKDPIVRRNELKATIG--PLLISLISKAAGDMIAESLASQVLVDALLYAPCEKEEA 524
Query: 541 LRPTLDDKLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVM--DCPKFASTLW 598
+ TL K + +++N H S +++V D K AS L
Sbjct: 525 VDATL--KAFDGNPEQDNHLIHQIHCSRALKTLVQNGHWSGAEKQVVKAEDDLKVASKLI 582
Query: 599 KNALKGKSEFWAQGHSCKVVTAFLES-SDFKVRELAK 634
K E WA G VV A LE+ SD + +E K
Sbjct: 583 VIIKKYLVE-WASGDGAFVVVAVLEALSDSEKQEFLK 618
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 384 (140.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 97/323 (30%), Positives = 167/323 (51%)
Query: 106 ELASLWEKMRQRNIA--KETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAE 163
++ SLWEK+R A K R KL E + I ++ H +SRV+QT VKY S+
Sbjct: 131 KIKSLWEKLRVTKPAPTKAQRDKLCDEVWELSHDVINDLVMKHDASRVVQTLVKYSSKER 190
Query: 164 RDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVV 223
RD + L+ F LA + Y +L+ K+L SK+ A + LHG + L+RH G+ V
Sbjct: 191 RDIIVNSLKGSFYQLATSAYGKYLLIKLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYV 250
Query: 224 VEHAYQL-GNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMAS 282
VE Y L + Q+Q+++ E + ++ +F++ S K ++D+ + +K ++ ++
Sbjct: 251 VEDLYVLYSTSEQRQQMIREFWGSQYAVFRD--SGKGKTVLDITRESAEKKQLIMSNLYG 308
Query: 283 VIQPILEKGIIDHSIIHRVLMEYLSM------ADKSSAADIIQQLSGPLLVRMIHTRDGS 336
I+ +EKG I+H + EY+++ A+ S+ D I L G ++HT++GS
Sbjct: 309 TIKASVEKGSTGFQILHAAMKEYVTVLKDDIDANDSAIRDFIDLL-GEQFAELVHTQEGS 367
Query: 337 KIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 396
+ + +AKER + ++ G++VL+ + VDDT LI+K E+
Sbjct: 368 DVACNLIALANAKERKVIIRGLKTHTNELIKNEYGNIVLITLFMTVDDTVLISKSFGAEI 427
Query: 397 --QSIIKELVMDKNGRRVLLQLL 417
++ +L+ DK RR +L LL
Sbjct: 428 FTSELVPQLIQDKFSRRPILYLL 450
Score = 58 (25.5 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 479 ENLPLAEGGKKDPRVRRQELLVSS--GLAESMIDVCIENAGELLRSNFGKEVLYEVAKGG 536
E L + KKD R+ ELL S + ++++D E+ +LL+ N +V+ E+
Sbjct: 470 EELAYKKTSKKDKEQRKSELLERSISPIYKALLDE--ESIVKLLQVNIAAQVITELILTS 527
Query: 537 S--DDI---LRPTLDD 547
+ +D+ LRP L D
Sbjct: 528 TNVEDVNKNLRPQLAD 543
Score = 48 (22.0 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 11 KPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSK 44
K VKR K +N +SKK K+A PS S+S+
Sbjct: 6 KGVKRSADKY--NNKSSKKAKVAEKLPSPSSESE 37
>SGD|S000002904 [details] [associations]
symbol:PUF6 "Pumilio-homology domain protein that binds the
3' UTR of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0015934 "large ribosomal subunit"
evidence=IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002904 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005934 GO:GO:0006810
EMBL:BK006938 EMBL:U33057 GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:0015934 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF PIR:S69554 RefSeq:NP_010784.1
ProteinModelPortal:Q04373 SMR:Q04373 DIP:DIP-6579N IntAct:Q04373
MINT:MINT-637951 STRING:Q04373 PaxDb:Q04373 PeptideAtlas:Q04373
EnsemblFungi:YDR496C GeneID:852107 KEGG:sce:YDR496C CYGD:YDR496c
NextBio:970463 Genevestigator:Q04373 GermOnline:YDR496C
Uniprot:Q04373
Length = 656
Score = 380 (138.8 bits), Expect = 6.9e-35, Sum P(2) = 6.9e-35
Identities = 86/316 (27%), Positives = 168/316 (53%)
Query: 106 ELASLWEKMRQRN--IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAE 163
++ S+WE++R + + K+ R KL +E + K I ++ H +SR++QT VKY S+
Sbjct: 126 QIKSVWERLRVKTPPLPKQIREKLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDR 185
Query: 164 RDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVV 223
R+ + + L+ F LA + Y +L+ K+L S+ I+ LHG + L+RH G+ V
Sbjct: 186 REQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYV 245
Query: 224 VEHAYQL-GNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVL-RHMA 281
VE + L Q+Q+++ E + +E +F+ + ++ + + ++K +++ R++
Sbjct: 246 VEDLFVLYATHEQRQQMIKEFWGSEYAVFRET---HKDLTIEKVCESSIEKRNIIARNLI 302
Query: 282 SVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGML 341
I +EKG I+H + EY+ +A++ +++I+ L ++HT +GS +
Sbjct: 303 GTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQF-AELVHTPEGSDVACT 361
Query: 342 CVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIK 401
V +AKER + ++ G++V + I++ VDDT L+ K ++ ++
Sbjct: 362 LVARANAKERKLILKALKNHAEKLIKNEYGNIVFITILNCVDDTVLVFKTFSPTVKEHLQ 421
Query: 402 ELVMDKNGRRVLLQLL 417
E ++DK GRR L +L
Sbjct: 422 EFIIDKFGRRPWLYIL 437
Score = 61 (26.5 bits), Expect = 6.9e-35, Sum P(2) = 6.9e-35
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 547
KKDP RR ELL S A + ++ +L N G + + EV +D L L++
Sbjct: 465 KKDPLQRRHELL--SKFAPMFLSTISKDYSSILTENLGCQFIAEVL---INDELYAQLNE 519
Query: 548 K-LNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLV 587
K + + H + S+R ++ L+
Sbjct: 520 KDQEKYQQVLNNILTTFKGDITEEEHPIHRAFSTRLLKALI 560
>WB|WBGene00014165 [details] [associations]
symbol:puf-12 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0018991 "oviposition"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0018991 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 EMBL:Z48544 PIR:T28120
RefSeq:NP_496178.1 ProteinModelPortal:Q09622 SMR:Q09622
STRING:Q09622 PaxDb:Q09622 EnsemblMetazoa:ZK945.3.1
EnsemblMetazoa:ZK945.3.2 GeneID:174572 KEGG:cel:CELE_ZK945.3
CTD:174572 WormBase:ZK945.3 HOGENOM:HOG000020011 InParanoid:Q09622
OMA:TSRVIEC NextBio:884608 Uniprot:Q09622
Length = 766
Score = 395 (144.1 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 93/315 (29%), Positives = 162/315 (51%)
Query: 110 LWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFE 169
LWEK+R K + + E +KG ++ +H +SRV++ V + + +F
Sbjct: 253 LWEKIRMGKTPKAEKDTAVHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGIINNLFN 312
Query: 170 ELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQ 229
EL P + ++ N Y+ VKKML N +K+Q I+A GH +LLR + V+E+AY
Sbjct: 313 ELTPEIVRMSKNVYSKFFVKKMLKNGTKEQRDIIINAFRGHAPTLLRIKHAAEVLEYAYN 372
Query: 230 -LGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPIL 288
NA Q+ ++ E Y E LF+ +I+ L +++++ +K +L+H+ VI +
Sbjct: 373 DFANAHQRYNIITEFYGKEFILFRE-DNIRS--LTEILAEKPEKKVVILKHLDEVIGAVN 429
Query: 289 EKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSA 348
EK + SI+H++++++ D+ +++ L + IHT DG+K+ + +
Sbjct: 430 EKETLRLSILHKLMLDFFDNCDEEKKINLLDSLKDKI-PEFIHTPDGAKLAIKLIWFAPV 488
Query: 349 KERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKN 408
KER A + G VLL + VDDT L+ K+I+ EL + +K+L+ D
Sbjct: 489 KERKLIVKNFKDLSVKAAMEHYGHRVLLALFDTVDDTVLLNKVIVSELANEMKKLIEDDW 548
Query: 409 GRRVLLQLLHPNCSR 423
G +V+ L+HP R
Sbjct: 549 GEKVIHYLVHPRDGR 563
Score = 38 (18.4 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 6 RPETNKPVKRIFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKPFKSELQ 65
+ + +K VK + + S+ S G++ S S+S +P K K+ F EL+
Sbjct: 48 KSKVDKAVKDELERLKKSSSTSVFDN-DGTRDSLCSESSFGSQPAPKKKSKKVLFSGELE 106
>ASPGD|ASPL0000058629 [details] [associations]
symbol:AN10173 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308
GO:GO:0003723 OMA:FAELVHT EnsemblFungi:CADANIAT00001389
Uniprot:C8VSQ6
Length = 709
Score = 319 (117.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 84/308 (27%), Positives = 164/308 (53%)
Query: 110 LWEKMRQRN-IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVF 168
LWE++R+++ + + R KLI+E + G++ + H S RV+QT +KY + +R +
Sbjct: 166 LWERLRRKSHVPLKERKKLIAELFDIITGRVKDFVFKHDSVRVIQTALKYANVEQRKQIA 225
Query: 169 EELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAY 228
EL+ ++ LA + YA L+ K++ + + I+ +G V L+RH GS +++ Y
Sbjct: 226 HELKGSYVELAQSKYAKFLIGKLIVHGDSEIRDLIIAEFYGKVKRLIRHPEGSWILDDIY 285
Query: 229 QLGNATQKQE--LLVELYSTELQLFKNLVSIKESRLVDVISKL----GLQKASVLRHMAS 282
+ ATQ+Q+ LL E Y E +F++ + K+ + +SK+ +++ ++ +
Sbjct: 286 RTV-ATQEQQANLLREWYGAEFAIFRDN-NTKDKKPTADLSKILEEDPAKRSPIMHFLLE 343
Query: 283 VIQPILEKGIIDHSIIHRVLMEY-LSMADKSS-AADIIQQLSGP----LLVRMIHTRDGS 336
+I +++K +++H +++Y L++ +S A + I+ + G L+ + T+ G+
Sbjct: 344 LINQLIQKKTTGFTMLHDAMLQYFLNVKPGTSDATEFIELIKGDEEGDLVKNLAFTKSGA 403
Query: 337 KIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 396
+ L + + +AK+R +A D G +VLL ++DDTKL AK+I EL
Sbjct: 404 HLMCLALAYSTAKDRKHLTRFYKDTIKMMAGDLHGHLVLLAAYEVIDDTKLTAKLIFPEL 463
Query: 397 --QSIIKE 402
Q+I E
Sbjct: 464 LNQNIADE 471
Score = 103 (41.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 40/153 (26%), Positives = 67/153 (43%)
Query: 485 EGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSD-DILRP 543
E KKDP VRR EL+ ++ + +++D+ A LL ++FG + L EV D D +
Sbjct: 528 ETSKKDPAVRRMELIKAA--SPTLLDLITARAESLLTTSFGCQFLSEVLFDADDSDGKKH 585
Query: 544 TLDDKLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPKFA-STLWKNAL 602
T + T ++ +++ + T +K+ P L+ +
Sbjct: 586 TALSAVATAAKS-RSDTKDSPFVGRMLKSLVQGGRFNVTEKKVEKVSPPLGFDALFYEQI 644
Query: 603 KGKSEFWAQGHSCKVVTAFLESSDF-KVRELAK 634
+ WA G + V+ A +ES DF K EL K
Sbjct: 645 SDEIMAWATGSNVYVIVALVESEDFEKKNELIK 677
>UNIPROTKB|G4MRT4 [details] [associations]
symbol:MGG_13803 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50303 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:CM001231 KO:K14844
RefSeq:XP_003710911.1 ProteinModelPortal:G4MRT4
EnsemblFungi:MGG_13803T0 GeneID:5049020 KEGG:mgr:MGG_13803
Uniprot:G4MRT4
Length = 724
Score = 324 (119.1 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 116/498 (23%), Positives = 222/498 (44%)
Query: 7 PETNKPVKRIFAKTEPSNPASKKPKLAGSKPS-----EVSQSKDFKKPFNPDKRKQKPFK 61
P++ KP K+ + E S PA K ++A S+ + ++S DF + D ++
Sbjct: 21 PKSEKPTKKARSDKETSAPA--KQRIASSRKAFEAEGDLSDEDDFDGLSSED---EEDGG 75
Query: 62 SELQKTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELE------LAS------ 109
++L+ D +K K L+ L E LA
Sbjct: 76 ADLKSEDDHKHKKAKLSSGTSDGKTFERGQTSRESHALQKQLAQERKAAKPLADELARTK 135
Query: 110 -LWEKMRQRN-IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAV 167
LWE++R+++ + KE R L+ E + G++ + H + R +QT +KY + A+R +
Sbjct: 136 KLWERLRRKSHVPKEERQGLVDELFTIVTGRVRDFVLKHDAVRAVQTAIKYATMAQRREI 195
Query: 168 FEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHA 227
+EL+ F LA++ YA L+ K+L + + + +G V L+ H S +++
Sbjct: 196 AQELKGTFAQLAESRYAKFLIGKLLGHQDDEVRDLIVPEFYGKVKKLINHPEASWILDDI 255
Query: 228 YQLGNATQKQE--LLVELYSTELQLFK--NLVSIKESRLVDVISKLGLQKASVLRHMASV 283
Y+ G AT++Q+ LL E Y TE LFK N ++ L ++ ++ +L+++ +
Sbjct: 256 YR-GVATKEQKDILLREWYGTEFALFKPENGEAVTAD-LPKILKNEPSKRGPILKYLFGM 313
Query: 284 IQPILEKGIIDHSIIHRVLMEY-LSMA-DKSSAADIIQQL----SGPLLVRMIHTRDGSK 337
I +++K + +++H +++Y L + D + ++ + +G LL + TR G++
Sbjct: 314 INNLIQKQMTGFTMLHDAMLQYFLCLPPDTEEHKEFVEIIKADDNGDLLKNLAFTRSGAR 373
Query: 338 IGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQ 397
+ L + +G AK+R + D+ V+L ++DDT L +K I+ E+
Sbjct: 374 LVCLLLAYGGAKDRKQILKTYKDTFELMCGDRNAHAVILTAFDVIDDTVLTSKSILPEIL 433
Query: 398 SIIKELVMDKNGRRVLLQLLHPNCS---RYXXXXXXXXXXXXXXXXCAKEGSEVNSEAKN 454
+ DK V + +PN RY EV++ KN
Sbjct: 434 GKSE----DKEAENVFFCVNNPNARIVIRYPFEGTSKSLFPPSHWSDLGLLKEVHAIRKN 489
Query: 455 -NESSKEMADQEVVAVQA 471
++ E+ +E+VA +
Sbjct: 490 TSKKDPEVRRKEIVAAMS 507
Score = 91 (37.1 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 47/188 (25%), Positives = 84/188 (44%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEV---AKGGSDDILRP- 543
KKDP VRR+E++ + ++ +++ V +A +++ ++FG +++ EV A G + L
Sbjct: 492 KKDPEVRRKEIVAA--MSPALLRVIASSAKDIMSTSFGCQMITEVLLSAVGDKTEALNAV 549
Query: 544 --TLDDKLNTLHETIXXXXX-------XXXXXXXXXXHVLENFHSSRTIRKL-VMDCP-K 592
T + N E ++ H + K+ D P
Sbjct: 550 AATAEGDPNQEPEENPDSLAPPRPHPARDPFAARMYKTLVSGGHYDKASGKVKAADPPLN 609
Query: 593 FASTLWKNALKGKSEFWAQGHSCKVVTAFLESSDFKVR--ELAKT--ELQPLIDSGSLKI 648
FA+TL+ + +K WA G V LE+ DF+ R EL KT + + L++ S++
Sbjct: 610 FANTLY-DVIKSHIVAWATGPGSFVPVGLLEAEDFEPRKAELVKTLKKNKKLLEKASIE- 667
Query: 649 PEAKQLPK 656
A+Q K
Sbjct: 668 ETAEQKAK 675
Score = 58 (25.5 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 443 KEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRV-RRQELLVS 501
K+ ++ +A E++++ A +E +A E + A G+KD R ++ELLV
Sbjct: 655 KKNKKLLEKASIEETAEQKAKREALAAVDSEEGQEVDKAA-ARKGRKDKRKGAKKELLVG 713
Query: 502 SGLAESMID 510
+ A+ +++
Sbjct: 714 NAGAKILLE 722
>FB|FBgn0015527 [details] [associations]
symbol:pen "penguin" species:7227 "Drosophila melanogaster"
[GO:0007475 "apposition of dorsal and ventral imaginal disc-derived
wing surfaces" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0003723 GO:GO:0007475 EMBL:AF017777 ChiTaRS:Pen
eggNOG:NOG273657 KO:K14844 GeneTree:ENSGT00390000015757
EMBL:AF132165 PIR:T08427 RefSeq:NP_523429.1 UniGene:Dm.235
ProteinModelPortal:O61345 SMR:O61345 DIP:DIP-21277N
MINT:MINT-752576 STRING:O61345 PaxDb:O61345 PRIDE:O61345
EnsemblMetazoa:FBtr0077223 GeneID:33112 KEGG:dme:Dmel_CG1685
UCSC:CG1685-RA CTD:33112 FlyBase:FBgn0015527 HOGENOM:HOG000245365
InParanoid:O61345 OMA:SNSHIGL OrthoDB:EOG4PRR64 PhylomeDB:O61345
GenomeRNAi:33112 NextBio:781967 Bgee:O61345 GermOnline:CG1685
Uniprot:O61345
Length = 737
Score = 331 (121.6 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 82/323 (25%), Positives = 157/323 (48%)
Query: 101 YDLELELASLWEKMRQRNIAKETRSKLISEALQKMK-GK-IPEIAGSHVSSRVLQTCVKY 158
Y++ E + EK+R R E + KL+ + + + G I ++ +H ++RV+Q+ +KY
Sbjct: 134 YEISKEANQIHEKLRCRRT--ENKDKLVEQIYKVLNVGDTISKVVKAHDTARVIQSMLKY 191
Query: 159 CSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHM 218
S A R + E+L P + + + YA V++ML + A + +L+GH+ L H
Sbjct: 192 ASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPATKAKLVDSLYGHIVRLAGHS 251
Query: 219 VGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLR 278
+GS +++ YQ Q+ + E Y L++ L D + KAS+L
Sbjct: 252 IGSGLLDSMYQSATPNQRIYMRQEFYG---DLYRKAKDSNVKTLSDTYKEATNMKASILG 308
Query: 279 HMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAA--DIIQQLSGPLLVRMIHTRDGS 336
+ + + + K ++D +++H V++EYL D+ + + + L+ M+ T++GS
Sbjct: 309 SVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEETVTAFAA-LVPHMLSTKEGS 367
Query: 337 KIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 396
+ ++C + K R +A+ + G + L+ +++ +DDTK K I L
Sbjct: 368 EAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVFLISLLNALDDTKATKKAIYDHL 427
Query: 397 QSIIKELVMDKNGRRVLLQLLHP 419
+K L+ GRRV+ L+ P
Sbjct: 428 HGDLKALMSSPYGRRVIQWLVAP 450
Score = 45 (20.9 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 487 GKKDPRVRRQELL--VSSGLAESMID 510
GKK+ +RR+E+L + + +A+S+ +
Sbjct: 471 GKKEKELRRKEILEQIEAPIAQSIAE 496
>UNIPROTKB|F1NWW8 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00681111 Ensembl:ENSGALT00000034677
ArrayExpress:F1NWW8 Uniprot:F1NWW8
Length = 613
Score = 293 (108.2 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 81/308 (26%), Positives = 151/308 (49%)
Query: 6 RPETNKPVKRIFAK-TEPSNPAS--KKPKLAGSKPSEVSQSKDFKKPFNPDK-RKQKPFK 61
+ + + P+K +K E P S KKP +P S K FK +K K++ ++
Sbjct: 30 KDDDSVPLKTFHSKGDEEEKPKSISKKPVKGNLRPGRASV-KQFKNKQQSEKLAKKRRYQ 88
Query: 62 SELQ-KTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIA 120
Q ++D K K +YD+ ++ +WE +R++
Sbjct: 89 DSTQGESDSKKPKWDDFKKKKKELKQSRQLNDRS-----NYDIIVKSKQIWESVRRKKCD 143
Query: 121 KETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLAD 180
KE R KL++E + + GKI +A +H S+RV+Q ++Y + +R FEEL+ + L+
Sbjct: 144 KEKREKLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSK 203
Query: 181 NTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELL 240
+ Y+ ++VKK L +K+Q+A I + GHV +LRH S VVE+AY +++ +L
Sbjct: 204 SKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNML 263
Query: 241 VE-LYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIH 299
E LY Q++K + ++++ + ++ ++L M ++ P+ + + +I
Sbjct: 264 TEELYGNTFQVYKTPIVPTLDKVLEAQPE---KREAILDEMKQILTPMAQNAEMIEAIRE 320
Query: 300 RVLMEYLS 307
V+ YL+
Sbjct: 321 AVI--YLA 326
Score = 175 (66.7 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 62/280 (22%), Positives = 123/280 (43%)
Query: 157 KYCSQAERDAVFEELQPHFLSLADNTYAVH----LVKKMLDNASKKQLAGFISALHGHVA 212
K C + +R+ + ELQ N H +++ + + KQ L +
Sbjct: 140 KKCDKEKREKLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLV 199
Query: 213 SLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVI--SKLG 270
L + +V+ G KQ++ + S + + K L + S +V+ K
Sbjct: 200 ELSKSKYSRNIVKKFLMYGT---KQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAI 256
Query: 271 LQKASVLRH---------MASVIQPILEKGIIDHSIIHRVLMEYLS--MADKSSAADIIQ 319
L++ ++L + I P L+K + +++ + + + A++I+
Sbjct: 257 LEQRNMLTEELYGNTFQVYKTPIVPTLDKVLEAQPEKREAILDEMKQILTPMAQNAEMIE 316
Query: 320 QLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIV 379
+ ++ + HT DG+++ M C+ HG+ K+R +A + +VLL
Sbjct: 317 AIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEKIATGEFSHLVLLAAF 375
Query: 380 SIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419
+DDTKL+ ++II EL + + L+ +K+G++VLL LL P
Sbjct: 376 DCIDDTKLVKQLIITELNASLPSLISNKHGKKVLLYLLSP 415
Score = 41 (19.5 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 388 IAKIIIRELQSIIKELVMDK 407
I+ ++ LQ I+E+VMDK
Sbjct: 453 ISPPLLEYLQEHIQEIVMDK 472
Score = 39 (18.8 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 609 WAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 641
WA+ V+ L S+D KV K L+ ++
Sbjct: 560 WAEVNRGAIVLCCLLRSTDQKVTNAVKKGLKKIV 593
>UNIPROTKB|I3LI55 [details] [associations]
symbol:I3LI55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000015757
Ensembl:ENSSSCT00000025417 Uniprot:I3LI55
Length = 573
Score = 260 (96.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 111/430 (25%), Positives = 191/430 (44%)
Query: 2 AAKNRPETNKPVKRIFAKTEPSN--PASKKPKLAGSKPSEVSQSKDFKKPFNPDKRKQKP 59
++K P+ K VK K N ++ KP G K + Q D K P N ++ K
Sbjct: 31 SSKTFPQ--KVVKEGEPKITSKNFEKSATKPGKKGVKQFKNKQQGD-KIPKNKFQQGNK- 86
Query: 60 F--KSELQ---KTDGNKEKNQSLTXXXXXXXXXXXXXXXXXXXXXHYDLELELASLWEKM 114
F K ++Q K DG+ K +YD+ + +WE +
Sbjct: 87 FNRKRKIQPDSKNDGSAAKKPKWDEFKKKKKELKQSRQLSDKA--NYDIVVRAKQIWEIL 144
Query: 115 RQRNIAKETRSKLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQP 173
R+++ KE R KL+S+ LQK+ +GKI ++ ++ R ++ +Y S + L+
Sbjct: 145 RRKDCNKEKRVKLMSD-LQKLIQGKIKTVSSTYCMMRSIKYD-RYGSCKNNKTILL-LKD 201
Query: 174 HFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLG-N 232
FLS N Y +K N K L + V+ R + ++ N
Sbjct: 202 DFLSFIKNIYGKKTKRKKKKNLWKSLLKEILLKFMSKVSHRSRFTEAGLDFQNRENDHLN 261
Query: 233 ATQKQELLVELYSTELQLFKNLVSI-KESRLVDVISKLGLQKASVLRHMASVIQ-PILEK 290
K L L ++ L +I +S ++ + K+ L+ L H +I+ P +K
Sbjct: 262 IFYKNRHTFFLPGGSLCIYLILPNIIMKSYMLKIKIKIKLK----LSHNKLMIEFPPQKK 317
Query: 291 GIIDHSIIHRVLMEYLS-MADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAK 349
I HS + + ++Y + + + ++I+ + ++ + HT DG+++ M C+ HG+ K
Sbjct: 318 IIKKHSHLLKNHLKYSTHYVSRKKSDEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPK 376
Query: 350 ERXXXXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNG 409
+R VA+ Q +VLL +DDTKL+ +III E+ + + +V DK G
Sbjct: 377 DRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYG 436
Query: 410 RRVLLQLLHP 419
R+VLL LL P
Sbjct: 437 RKVLLYLLSP 446
Score = 45 (20.9 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 488 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 546
KKD +RR+ELL S ++ +++ +A E++ ++ ++ D+ +P ++
Sbjct: 470 KKDTEIRRRELLES--ISPALLSYLQGHAQEVMLDKSACVLVSDILGAAIGDV-QPAMN 525
>UNIPROTKB|D4A5Q5 [details] [associations]
symbol:D4A5Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50303
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00568526 Ensembl:ENSRNOT00000030427 OMA:ASAIVEC
Uniprot:D4A5Q5
Length = 233
Score = 178 (67.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 71/250 (28%), Positives = 118/250 (47%)
Query: 132 LQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKK 190
LQK+ +G+I IA +H S LQ + R FEELQ L L+ Y+ ++ KK
Sbjct: 4 LQKLIQGRIKTIAFAHDSQ--LQR------EELRKQAFEELQGD-LELSKAKYSRNIAKK 54
Query: 191 MLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LYSTELQ 249
L SK Q+ I + HV +L+H S +VE AY +++ +L E LY +
Sbjct: 55 FLMYGSKPQVVEIIRSFKDHVRKMLQHSEASAIVECAYNDKAILEQRNMLTEELYGNKSA 114
Query: 250 LFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKG-IIDHSIIHRVLMEYLS- 307
+L + E + KL L +L M ++ P+ KG +I HS++H+V ++ L+
Sbjct: 115 DHPSLEMVLELQP----GKLEL----ILDEMKQILTPMARKGAVIKHSLVHKVFLDCLTH 166
Query: 308 MADKSSAA-DIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVA 366
+ K S + I++ V + T G+++ M C++H + +R VA
Sbjct: 167 IPPKQSELNETIREA-----VVYLATHYGARVAMHCLRHDTP-DRKMIMKTMKTYMETVA 220
Query: 367 HDQCGSMVLL 376
+ +VLL
Sbjct: 221 NGHYSHLVLL 230
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 154 (59.3 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 53/218 (24%), Positives = 103/218 (47%)
Query: 108 ASLWEKMRQRNIAKETRSKLISEA-LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDA 166
+S+ + +++ + E +S + L + G++ E + SR +Q +++CS E+ +
Sbjct: 601 SSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKAS 660
Query: 167 VFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEH 226
VF E+ P L + + ++++K +++ + Q + L G + SL M G V++
Sbjct: 661 VFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQK 720
Query: 227 AYQLGNATQKQELLVELYSTELQLFKN----------LVSIKESRLVDVISKLGLQKASV 276
A ++ + QK EL+ EL L+ ++ + S+ R+ VI+ Q A++
Sbjct: 721 ALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATL 780
Query: 277 LRHM--ASVIQPILEKGIID---HSIIHRVLMEYLSMA 309
H VIQ ILE D H II +L ++A
Sbjct: 781 STHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALA 818
Score = 43 (20.2 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 508 MIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 546
+ID +E+A L +G V V + G D R ++
Sbjct: 806 IIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIE 844
Score = 39 (18.8 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 13/65 (20%), Positives = 28/65 (43%)
Query: 16 IFAKTEPSNPASKKPKLAGSKPSEVSQSKDFKKPFNPDK---RKQKPFKSELQKTDGNKE 72
+F + PS+ AS+ + ++ + SQ + + P + P + + G ++
Sbjct: 299 VFGASPPSSVASRMRR---NQEDQQSQGRRMPPQYTPSSYQVQASSPQQMSYPRIGGTQD 355
Query: 73 KNQSL 77
QSL
Sbjct: 356 MMQSL 360
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 134 (52.2 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 68/294 (23%), Positives = 134/294 (45%)
Query: 132 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEEL-QPHFLSLADNTYAVHLVKK 190
L + G + + SR +Q + ++ ER+AVF+E+ L L + + ++V+K
Sbjct: 394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQK 453
Query: 191 MLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQL 250
+ ++KQ +S + GHV SL M G VV+ A + + + +L+ EL L
Sbjct: 454 YFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDC 513
Query: 251 F--KNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSM 308
+N + + + ++ I LQ +LR + I +L +I R + E+
Sbjct: 514 VCDQNGNHVIQ-KAIECIDTGHLQ--FILRALRPQIH-VLSAHPYGCRVIQRAI-EHCHS 568
Query: 309 ADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVA-H 367
K II++L P ++++ + G+ + ++ GS ++ ++ H
Sbjct: 569 ERKL----IIEELL-PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCH 623
Query: 368 DQCGSMVLLCI--VSIVDDTKLIAKIIIRELQ--SIIKELVMDKNGRRVLLQLL 417
++V CI +S VD +++ KII + + SI+ ++ DK V+ +LL
Sbjct: 624 KFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLL 677
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 124 (48.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 53/215 (24%), Positives = 93/215 (43%)
Query: 137 GKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNAS 196
G I E + SR +Q ++ + AER VF E+ L + + ++++K + S
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 197 KKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVS 256
+Q + GHV SL M G V++ A + Q+++ E+ EL L
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINEMVR-ELDGHV-LKC 117
Query: 257 IKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAAD 316
+K+ V+ K ++ + + +I + + +I VL E+ DKS
Sbjct: 118 VKDQNGNHVVQKC-IECVQP-QSLQFIIDAFKGQDQYGNYVIQHVL-EHGRPEDKSK--- 171
Query: 317 IIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKER 351
I+ ++ G +LV H + S + CV H S ER
Sbjct: 172 IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTER 205
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 133 (51.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 60/307 (19%), Positives = 123/307 (40%)
Query: 25 PASKKP-KLAGSKPSEVSQSKDFKKPFNPDKRKQKPFKSELQKTDGNKEKNQSLTXXXXX 83
P +K K +K + S + K NP P K+ +K +K N+S
Sbjct: 436 PKDEKTFKKRNNKNHPANNSNNANKQANPYLENSIPTKNTSKKNASSKS-NESTANNHKS 494
Query: 84 XXXXXXXXXXXXXXXXHYDLELELASLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIA 143
Y + L E++R + K + S + +L+ + G E
Sbjct: 495 HSHSHPHSQSLQQQQQTY----HRSPLLEQLRNSSSDKNSNSNM---SLKDIFGHSLEFC 547
Query: 144 GSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGF 203
SR +Q + +E++ +F E++ + L+++ + ++++K + SK Q
Sbjct: 548 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTL 607
Query: 204 ISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLV 263
+ G++ L M V++ A + ++ Q+ EL++EL + LQ+ K+ +
Sbjct: 608 VDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNG--NHVIQ 665
Query: 264 DVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSG 323
I + ++K + ++S+ I + HS RV+ L I+ +L
Sbjct: 666 KAIETIPIEKLPFI--LSSLTGHIYH--LSTHSYGCRVIQRLLEFGSSEDQESILNELKD 721
Query: 324 --PLLVR 328
P L++
Sbjct: 722 FIPYLIQ 728
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 129 (50.5 bits), Expect = 0.00015, P = 0.00015
Identities = 67/310 (21%), Positives = 133/310 (42%)
Query: 116 QRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHF 175
+R A E R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H
Sbjct: 629 ERATAAE-RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSHEQKLALAERIRGHV 683
Query: 176 LSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQ 235
LSLA Y +++K L+ Q + L GHV ++ G+ VV+ + Q
Sbjct: 684 LSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQ 740
Query: 236 KQELLVELYSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGII 293
Q L + + + Q+F R++ I + L Q +L + + +++
Sbjct: 741 PQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYG 800
Query: 294 DHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXX 353
++ I H ++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 801 NYVIQH--VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAV 854
Query: 354 XXXXX-------XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMD 406
+ DQ + V+ ++ + + + KI++ +++ I L
Sbjct: 855 LIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKY 912
Query: 407 KNGRRVLLQL 416
G+ +L +L
Sbjct: 913 TYGKHILAKL 922
Score = 122 (48.0 bits), Expect = 0.00087, P = 0.00087
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 132 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 191
L+++ G I E + SR +Q ++ + AER VF E+ L + + ++++K
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 192 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 251
+ S +Q + GHV SL M G V++ A + + Q+ E++ EL L+
Sbjct: 664 FEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCV 723
Query: 252 KN 253
K+
Sbjct: 724 KD 725
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 427 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 482
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 483 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 539
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 540 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 597
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 598 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 653
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 654 NDGPHSALYTMMKDQYANYVVQKMIDVAEPAQ--RKIVMHKIRPHIATLRKYTYGKHILA 711
Query: 415 QL 416
+L
Sbjct: 712 KL 713
Score = 121 (47.7 bits), Expect = 0.00081, P = 0.00081
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 132 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 191
L+++ G I E + SR +Q ++ + AER VF E+ L + + ++++K
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 454
Query: 192 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 251
+ S +Q + GHV SL M G V++ A + + Q+ E++ EL L+
Sbjct: 455 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCV 514
Query: 252 KN 253
K+
Sbjct: 515 KD 516
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 126 (49.4 bits), Expect = 0.00042, P = 0.00042
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 878 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 933
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 934 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 990
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 991 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 1048
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 1049 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 1104
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 1105 NDGPHSALYTMMKDQYANYVVQKMIDVAEPAQ--RKIVMHKIRPHIATLRKYTYGKHILA 1162
Query: 415 QL 416
+L
Sbjct: 1163 KL 1164
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 124 (48.7 bits), Expect = 0.00053, P = 0.00053
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 636 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 691
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 692 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 748
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 749 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 806
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 807 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 862
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 863 NDGPHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILA 920
Query: 415 QL 416
+L
Sbjct: 921 KL 922
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 123 (48.4 bits), Expect = 0.00064, P = 0.00064
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 126 KLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 184
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 666 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 724
Query: 185 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 244
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 725 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 784
Query: 245 STELQL 250
L L
Sbjct: 785 GKVLAL 790
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 124 (48.7 bits), Expect = 0.00065, P = 0.00065
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 817 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 872
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 873 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 929
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 930 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 987
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 988 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 1043
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 1044 NDGPHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILA 1101
Query: 415 QL 416
+L
Sbjct: 1102 KL 1103
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 124 (48.7 bits), Expect = 0.00065, P = 0.00065
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 819 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 874
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 875 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 931
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 932 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 989
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 990 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 1045
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 1046 NDGPHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILA 1103
Query: 415 QL 416
+L
Sbjct: 1104 KL 1105
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 124 (48.7 bits), Expect = 0.00069, P = 0.00069
Identities = 64/302 (21%), Positives = 129/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 878 RQLVFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMY 933
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 934 GCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 990
Query: 244 YSTELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + L Q +L + + +++ ++ I H
Sbjct: 991 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH-- 1048
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 1049 VLEHGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTM 1104
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L
Sbjct: 1105 NDGPHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILA 1162
Query: 415 QL 416
+L
Sbjct: 1163 KL 1164
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 123 (48.4 bits), Expect = 0.00073, P = 0.00073
Identities = 36/145 (24%), Positives = 71/145 (48%)
Query: 100 HYDL-ELELASLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKY 158
H D+ ASL E + +TRS +SE + G + E + SR +Q ++
Sbjct: 637 HVDIGSTAEASLLEGFKNN----KTRSLELSEIV----GHVIEFSMDQYGSRFIQQKLET 688
Query: 159 CSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHM 218
+ E++A+F E+ P+ +L + + ++++K ++ + KQ + GHV +L M
Sbjct: 689 ATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQM 748
Query: 219 VGSVVVEHAYQLGNATQKQELLVEL 243
G V++ A ++ Q+ ++ EL
Sbjct: 749 YGCRVIQKALEVVELEQQARMVKEL 773
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 123 (48.4 bits), Expect = 0.00073, P = 0.00073
Identities = 62/302 (20%), Positives = 128/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ ++ H L LA Y
Sbjct: 700 RQMVFNEILQAAYQLMTDVFGNYV----IQKFFEFGSLDQKLALATRIRGHVLPLALQMY 755
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L++ S Q + + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 756 GCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 812
Query: 244 YSTELQLFKNLVSIKESRLVDVISK--LGLQKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + Q +L + + +++ ++ I H
Sbjct: 813 DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH-- 870
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +L H + S + CV H S ER
Sbjct: 871 VLEHGRPEDKSK---IVSEIRGKVLALSQH-KFASNVVEKCVTHASRAERALLIDEVCCQ 926
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KII+ +++ I L G+ +L
Sbjct: 927 NDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ--RKIIMHKIRPHITTLRKYTYGKHILA 984
Query: 415 QL 416
+L
Sbjct: 985 KL 986
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
Identities = 62/302 (20%), Positives = 128/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ ++ H L LA Y
Sbjct: 755 RQMVFNEILQAAYQLMTDVFGNYV----IQKFFEFGSLDQKLALATRIRGHVLPLALQMY 810
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L++ S Q + + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 811 GCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 867
Query: 244 YSTELQLFKNLVSIKESRLVDVISK--LGLQKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + Q +L + + +++ ++ I H
Sbjct: 868 DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH-- 925
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +L H + S + CV H S ER
Sbjct: 926 VLEHGRPEDKSK---IVSEIRGKVLALSQH-KFASNVVEKCVTHASRAERALLIDEVCCQ 981
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KII+ +++ I L G+ +L
Sbjct: 982 NDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ--RKIIMHKIRPHITTLRKYTYGKHILA 1039
Query: 415 QL 416
+L
Sbjct: 1040 KL 1041
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
Identities = 62/302 (20%), Positives = 128/302 (42%)
Query: 124 RSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 183
R + +E LQ + ++ G++V +Q ++ S ++ A+ ++ H L LA Y
Sbjct: 756 RQMVFNEILQAAYQLMTDVFGNYV----IQKFFEFGSLDQKLALATRIRGHVLPLALQMY 811
Query: 184 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 243
+++K L++ S Q + + L GHV ++ G+ VV+ + Q Q L +
Sbjct: 812 GCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFII 868
Query: 244 YSTELQLFKNLVSIKESRLVDVISK--LGLQKASVLRHMASVIQPILEKGIIDHSIIHRV 301
+ + Q+F R++ I + Q +L + + +++ ++ I H
Sbjct: 869 DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH-- 926
Query: 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX--- 358
++E+ DKS I+ ++ G +L H + S + CV H S ER
Sbjct: 927 VLEHGRPEDKSK---IVSEIRGKVLALSQH-KFASNVVEKCVTHASRAERALLIDEVCCQ 982
Query: 359 ----XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414
+ DQ + V+ ++ + + + KII+ +++ I L G+ +L
Sbjct: 983 NDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ--RKIIMHKIRPHITTLRKYTYGKHILA 1040
Query: 415 QL 416
+L
Sbjct: 1041 KL 1042
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 126 KLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 184
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 886
Query: 185 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 244
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 887 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 245 STELQL 250
L L
Sbjct: 947 GKVLAL 952
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 123 (48.4 bits), Expect = 0.00078, P = 0.00078
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 126 KLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 184
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 886
Query: 185 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 244
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 887 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 245 STELQL 250
L L
Sbjct: 947 GKVLAL 952
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 121 (47.7 bits), Expect = 0.00088, P = 0.00088
Identities = 27/115 (23%), Positives = 59/115 (51%)
Query: 127 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 186
LI + G I ++A RV+Q +++C++ + + +EL +SL + Y +
Sbjct: 596 LIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNY 655
Query: 187 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV 241
+++ +L+N + + + + L G + +L +H S V+E Q G T ++ L++
Sbjct: 656 VIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHG-CTAERILII 709
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 658 593 0.00084 120 3 11 23 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 616 (65 KB)
Total size of DFA: 291 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.43u 0.10s 53.53t Elapsed: 00:00:03
Total cpu time: 53.44u 0.10s 53.54t Elapsed: 00:00:03
Start: Mon May 20 23:47:43 2013 End: Mon May 20 23:47:46 2013