Query 006165
Match_columns 658
No_of_seqs 307 out of 1521
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2050 Puf family RNA-binding 100.0 6E-100 1E-104 810.5 48.4 522 78-655 106-644 (652)
2 cd07920 Pumilio Pumilio-family 100.0 2E-37 4.4E-42 329.9 33.0 278 133-420 5-290 (322)
3 cd07920 Pumilio Pumilio-family 100.0 2E-37 4.3E-42 330.0 32.8 284 119-416 32-322 (322)
4 KOG1488 Translational represso 100.0 6.5E-35 1.4E-39 316.2 21.6 279 133-416 175-495 (503)
5 PF08144 CPL: CPL (NUC119) dom 99.9 6.1E-28 1.3E-32 226.6 9.6 131 404-590 1-133 (148)
6 KOG1488 Translational represso 99.9 3E-26 6.5E-31 248.9 20.5 251 122-378 205-495 (503)
7 COG5099 RNA-binding protein of 99.9 4.8E-26 1E-30 260.9 19.7 233 143-420 447-681 (777)
8 KOG2050 Puf family RNA-binding 99.9 1.1E-22 2.4E-27 219.0 33.8 453 106-627 113-591 (652)
9 KOG2049 Translational represso 99.9 2.1E-24 4.5E-29 236.7 19.2 243 133-420 213-459 (536)
10 KOG2049 Translational represso 99.9 1.3E-22 2.9E-27 222.4 22.6 281 125-414 241-530 (536)
11 COG5099 RNA-binding protein of 99.9 1.4E-22 3.1E-27 232.5 23.5 265 128-414 468-755 (777)
12 KOG2188 Predicted RNA-binding 99.9 2E-21 4.3E-26 211.5 27.9 456 104-640 65-588 (650)
13 KOG2188 Predicted RNA-binding 99.7 4.1E-16 9E-21 170.3 21.1 253 140-415 339-604 (650)
14 KOG4574 RNA-binding protein (c 98.7 1E-07 2.2E-12 107.6 10.5 271 138-421 547-854 (1007)
15 PF00806 PUF: Pumilio-family R 98.3 4.2E-07 9.1E-12 64.1 2.5 35 170-204 1-35 (35)
16 KOG4574 RNA-binding protein (c 98.3 1.2E-06 2.6E-11 99.2 6.6 221 160-409 533-774 (1007)
17 smart00025 Pumilio Pumilio-lik 98.0 3.9E-06 8.4E-11 58.9 2.5 34 171-204 2-35 (36)
18 PF00806 PUF: Pumilio-family R 97.8 2.1E-05 4.5E-10 55.4 3.2 34 135-168 2-35 (35)
19 smart00025 Pumilio Pumilio-lik 97.6 4.5E-05 9.8E-10 53.4 2.6 34 135-168 2-35 (36)
20 KOG1059 Vesicle coat complex A 81.5 1.1E+02 0.0024 36.1 18.5 58 172-229 220-279 (877)
21 PRK05686 fliG flagellar motor 77.3 1.1E+02 0.0024 33.0 19.1 31 331-361 199-229 (339)
22 TIGR00207 fliG flagellar motor 75.1 1.3E+02 0.0028 32.6 20.3 29 333-361 198-226 (338)
23 PF08144 CPL: CPL (NUC119) dom 73.5 16 0.00034 34.6 7.9 33 130-162 57-89 (148)
24 PF09770 PAT1: Topoisomerase I 49.4 38 0.00081 41.2 7.0 92 138-229 576-693 (808)
25 KOG3682 Predicted membrane pro 38.7 2.9E+02 0.0064 32.5 11.2 57 79-135 403-471 (930)
26 KOG2072 Translation initiation 37.6 8.3E+02 0.018 29.7 18.6 54 148-205 180-233 (988)
27 PF03378 CAS_CSE1: CAS/CSE pro 37.0 3.4E+02 0.0074 30.4 11.6 78 337-414 181-265 (435)
28 KOG1992 Nuclear export recepto 36.4 8.6E+02 0.019 29.6 16.6 51 336-386 701-756 (960)
29 KOG2235 Uncharacterized conser 29.9 9.6E+02 0.021 28.1 19.2 16 231-246 601-616 (776)
30 KOG2213 Apoptosis inhibitor 5/ 27.8 8.7E+02 0.019 26.9 15.7 17 424-440 279-295 (460)
31 PF12348 CLASP_N: CLASP N term 25.9 5.7E+02 0.012 25.2 10.3 8 150-157 94-101 (228)
32 PF01602 Adaptin_N: Adaptin N 25.8 9.7E+02 0.021 26.8 15.8 35 326-360 328-366 (526)
33 KOG2051 Nonsense-mediated mRNA 25.7 1E+03 0.022 29.7 13.3 54 120-177 456-509 (1128)
34 KOG2759 Vacuolar H+-ATPase V1 24.9 4.4E+02 0.0095 29.4 9.4 47 148-194 134-187 (442)
35 PF10508 Proteasom_PSMB: Prote 23.7 1.1E+03 0.024 26.8 19.9 72 335-412 78-155 (503)
36 KOG1240 Protein kinase contain 23.6 8.1E+02 0.018 31.1 12.0 86 140-229 435-529 (1431)
37 PLN03083 E3 UFM1-protein ligas 23.3 1.4E+03 0.03 27.8 28.0 91 152-246 533-640 (803)
38 KOG2023 Nuclear transport rece 22.2 1.4E+03 0.03 27.3 21.3 107 300-414 177-294 (885)
39 KOG2973 Uncharacterized conser 20.6 1.1E+03 0.023 25.4 20.0 116 372-536 174-297 (353)
No 1
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-100 Score=810.45 Aligned_cols=522 Identities=39% Similarity=0.600 Sum_probs=468.4
Q ss_pred chHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhh
Q 006165 78 TKRELRLRAKELAEARKKKRKRHYDLELELASLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVK 157 (658)
Q Consensus 78 ~~~e~~~~~kel~~~rk~~~k~~~~~~~~~k~iwE~lr~k~~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk 157 (658)
.+.|.|+++|+|.++||+++ |+|++.+++++|||+||++++++|+|.++|+++|+.++|++.++++.||+|||||+|++
T Consensus 106 ~~~~~~~e~K~l~kerK~~r-p~~~~~qe~kslWEkLR~k~~~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vk 184 (652)
T KOG2050|consen 106 DGGEFRKERKKLLKERKSKR-PTYEISQEAKSLWEKLRRKTTPKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVK 184 (652)
T ss_pred ccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHH
Confidence 45667999999999999977 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhccccchHHHHHHh-hCCHHHH
Q 006165 158 YCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQ-LGNATQK 236 (658)
Q Consensus 158 ~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~-~a~~~qr 236 (658)
||++++|++||++|.|.+++||+++||.|+|||||.||+++|++.||++|+||++.|++|+.|++||+++|+ +++..||
T Consensus 185 y~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr 264 (652)
T KOG2050|consen 185 YGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQR 264 (652)
T ss_pred hcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 7999999
Q ss_pred HHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHH
Q 006165 237 QELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAAD 316 (658)
Q Consensus 237 ~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~e 316 (658)
..|+.||||++|++|++.+ ..+|.++|+..|+++..|+++|..+|+++++|+.++++++|.+|++||++|+++++.+
T Consensus 265 ~~li~EfYG~efqlfK~sn---~~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~ade~e~~e 341 (652)
T KOG2050|consen 265 QYLIQEFYGDEFQLFKDSN---DKTLDKILAEAPEKKASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIADEEEKSE 341 (652)
T ss_pred HHHHHHHhhHHHHHHhccC---cccHHHHHHhChHhHHHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999965 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHH
Q 006165 317 IIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 396 (658)
Q Consensus 317 lI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL 396 (658)
+++.+. +.+++|+||++||+|++.|||+++||+|+.|+++|++|+..+|.|+|||+|+.++|+|+|||+++++.|++++
T Consensus 342 ~l~ll~-elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~ 420 (652)
T KOG2050|consen 342 LLELLK-ELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDTKLLKKLIYDEL 420 (652)
T ss_pred HHHHHH-HHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchHHHHHHHHHHHH
Confidence 999999 5589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCcCcHHHHHHHcCCCCCCCCCHHHHHhhhhcccccccccCcccchhhcccchhhhhhHHHHHhhhccCCCC
Q 006165 397 QSIIKELVMDKNGRRVLLQLLHPNCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTS 476 (658)
Q Consensus 397 ~~~l~~L~~~~~Gr~Vll~LL~~~~~r~f~p~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (658)
.+++..|..|+|||+|++||+.|+|++||+|+.++.|.+.
T Consensus 421 ~~el~~li~Dk~Grrv~lyll~p~D~~~f~~e~ie~l~~~---------------------------------------- 460 (652)
T KOG2050|consen 421 KSELKSLISDKYGRRVILYLLAPRDGRYFVPEFIEVLEEL---------------------------------------- 460 (652)
T ss_pred HHHHHHHhccchhhhhhhhhccCCccccccHHHHHHHHhc----------------------------------------
Confidence 9999999999999999999999999999999999877752
Q ss_pred CCCCCCCcCCCCCChHHHHHHHHhhcCCcHHHHHHHHhcHHHHHhccCcchHHHHHHhcCCCCCcCccchhhhhHHHHHH
Q 006165 477 PAENLPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDDKLNTLHETI 556 (658)
Q Consensus 477 ~~~~~~~~~~sKKd~~~Rr~EL~~~~~~~~~L~~~~~~~~~~ll~~~~g~~vl~e~l~~~~~~~~~~~~~d~~~~~~~ai 556 (658)
..+..|||||.+||.||+. +|+|.|+.+|.+|+++++.+++||+|+++.++++..|.+.. |+-+.+.+++
T Consensus 461 -----d~~k~sKKdp~vRr~eLla--~isp~lis~~s~~aeeil~e~~~~~~lV~~~l~~~~~~~d~---~~~q~~a~a~ 530 (652)
T KOG2050|consen 461 -----DSNKHSKKDPLVRRIELLA--AISPSLISLLSENAEEILAEALKSQVLVEASLGAEDGDKDP---DEKQAAAEAA 530 (652)
T ss_pred -----ccccccccCHHHHHHHHHH--hhhHHHHHHHHHhHHHHHHHhhcceeeHHhhhcCcccccCh---hhHHHHHHHH
Confidence 1246799999999999998 59999999999999999999999999999999988876632 2222333333
Q ss_pred HHHh-hccCCCcchhhhhhhcchhHHHH------------HHHHhCCchhH--HHHHHHhhhhhhhhhcc-ccchhHhHH
Q 006165 557 ASLA-SESKSEASEEEHVLENFHSSRTI------------RKLVMDCPKFA--STLWKNALKGKSEFWAQ-GHSCKVVTA 620 (658)
Q Consensus 557 ~~~~-~~~~~~~~~~~~~~~~~~~~r~l------------k~li~~~~~F~--~~l~~~~~~~~~~~wa~-~~g~~vv~a 620 (658)
...- +.|..... .-|..+.|.++.++ +.+..+.+.|. ..|.+.+.+++|.+||+ ++|||||+|
T Consensus 531 l~~~~~~~~~~~~-p~h~~~~~~~~~il~q~g~w~~~~~k~~~~~~~~g~~~~k~l~e~l~sk~L~sWa~~nrg~fvL~a 609 (652)
T KOG2050|consen 531 LPAFKAIPEEAKK-PKHQEEEPAAHLILGQEGAWMHIEKKRILKNNREGEGVPKLLLENLSSKNLKSWASVNRGCFVLLA 609 (652)
T ss_pred HHHhccCcccccC-CcchhcccchhhHHhccccchhHHHHHHhhhcCCccccHHHHHHHhhHHHHHHHHccCcchhhHHH
Confidence 2211 12221111 12333334333333 33333334333 47888888999999999 679999999
Q ss_pred hhcCCCHHHHHHHHHhhccccccCCccccccccCC
Q 006165 621 FLESSDFKVRELAKTELQPLIDSGSLKIPEAKQLP 655 (658)
Q Consensus 621 lle~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 655 (658)
|+|+.++.|.+..+.++...+.+|+++++.+++++
T Consensus 610 llE~~~~~v~~k~ka~~~r~~~~~~~~~~a~kg~~ 644 (652)
T KOG2050|consen 610 LLETCDDQVEEKKKAKLLRLVLSGILKDSATKGAE 644 (652)
T ss_pred HHHhcCHHhhhhHHHHHHHhhhhhhcccccCccHH
Confidence 99999999999999999999999999999888753
No 2
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=2e-37 Score=329.90 Aligned_cols=278 Identities=19% Similarity=0.303 Sum_probs=249.6
Q ss_pred HHHh-chHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHHhH
Q 006165 133 QKMK-GKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHV 211 (658)
Q Consensus 133 ~~ik-g~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v 211 (658)
..+. |++.++|.+|+|||+||++|+++++++|..||+++.|++.+||.|+||+||||++|+++++++|..|++.|.|++
T Consensus 5 ~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~ 84 (322)
T cd07920 5 QDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHV 84 (322)
T ss_pred HhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhh-hhhhHHHHHHhHHHHHHHHHhc
Q 006165 212 ASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK-LGLQKASVLRHMASVIQPILEK 290 (658)
Q Consensus 212 ~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~-~~~kr~~il~~~~~~iq~ileK 290 (658)
..|+.|+|||+|||++|+.++++++..++.+++++...++.|..| ...++.+++. .++.+..|++.+.+-+..+..
T Consensus 85 ~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~g--n~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~- 161 (322)
T cd07920 85 VRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNG--NHVIQKCIEKFPPEDLQFIIDAFKGNCVALST- 161 (322)
T ss_pred HHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccc--cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHc-
Confidence 999999999999999999989999999999999999999999998 6788888884 477778888777775555442
Q ss_pred CCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcCCc
Q 006165 291 GIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQC 370 (658)
Q Consensus 291 ~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d~~ 370 (658)
...+. .++..++..++++.+..+++.+.+. +..|+.+++|++|+++++++++++.++.|+..+.+++..|++|+|
T Consensus 162 ~~~G~----~vvq~~l~~~~~~~~~~l~~~l~~~-~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~ 236 (322)
T cd07920 162 HPYGC----RVIQRCLEHCSEEQREPLLEEILEH-ALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKF 236 (322)
T ss_pred Ccccc----HHHHHHHHhCCHHHHHHHHHHHHHH-HHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence 22333 3455566677888999999999876 789999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCchHHHHHHHHHHHH------HHHHHhhhCcCcHHHHHHHcCCC
Q 006165 371 GSMVLLCIVSIVDDTKLIAKIIIRELQ------SIIKELVMDKNGRRVLLQLLHPN 420 (658)
Q Consensus 371 G~~Vlq~lL~~~ddt~l~~k~I~~eL~------~~l~~L~~~~~Gr~Vll~LL~~~ 420 (658)
|++|++++|++.+... ++.|+++|. +++.+|+.|+||++|++++|...
T Consensus 237 Gs~Vve~~l~~~~~~~--~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~ 290 (322)
T cd07920 237 ASNVVEKCLKHASKEE--RELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVA 290 (322)
T ss_pred hHHHHHHHHHHCCHHH--HHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhC
Confidence 9999999999997644 788999994 58999999999999999988753
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=2e-37 Score=329.97 Aligned_cols=284 Identities=17% Similarity=0.326 Sum_probs=255.5
Q ss_pred CCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHH
Q 006165 119 IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK 198 (658)
Q Consensus 119 ~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~e 198 (658)
.++++|..++++ +.+++.+++.+++|++++|++++++++++|..|++++.|++.+||.|+||+|+||++|++++++
T Consensus 32 ~~~~~~~~i~~~----l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~ 107 (322)
T cd07920 32 ATPEEKELIFDE----ILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEE 107 (322)
T ss_pred CCHHHHHHHHHH----HHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHH
Confidence 366777777664 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhh-hhhhHHHHH
Q 006165 199 QLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK-LGLQKASVL 277 (658)
Q Consensus 199 qr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~-~~~kr~~il 277 (658)
++..|++++.+++..|+.|+||+||||++++.++++++..|+..|+|+...++.+..| +..+..+++. .+..+..++
T Consensus 108 ~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G--~~vvq~~l~~~~~~~~~~l~ 185 (322)
T cd07920 108 QISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYG--CRVIQRCLEHCSEEQREPLL 185 (322)
T ss_pred HHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccc--cHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 7889999984 467788888
Q ss_pred HhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHH
Q 006165 278 RHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKG 357 (658)
Q Consensus 278 ~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~ 357 (658)
+.+...+..+... ..++.+++. .+..++++.+..+++.+.++ +..|+++++||+|+++||.++++++|+.|++.
T Consensus 186 ~~l~~~~~~L~~d-~~Gn~vvq~----~l~~~~~~~~~~i~~~l~~~-~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~ 259 (322)
T cd07920 186 EEILEHALELVQD-QFGNYVVQH----VLELGDPDDTSRIIEKLLGN-IVQLSCHKFASNVVEKCLKHASKEERELIIDE 259 (322)
T ss_pred HHHHHHHHHHhcC-CchhhHHHH----HHhcCCHHHHHHHHHHHHHH-HHHHHcCcchHHHHHHHHHHCCHHHHHHHHHH
Confidence 8877777666543 445544444 34557788899999999977 79999999999999999999999999999999
Q ss_pred HH------HHHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHHH
Q 006165 358 MK------GHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 416 (658)
Q Consensus 358 lk------~~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~L 416 (658)
|. +++..|+.|+|||||||++|++++++. ++.|+..|.+++.+|+.++||++|+..|
T Consensus 260 l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~--~~~i~~~l~~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 260 ILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQ--RELLVEAIRPHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 84 599999999999999999999999654 8999999999999999999999999753
No 4
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-35 Score=316.21 Aligned_cols=279 Identities=21% Similarity=0.274 Sum_probs=246.1
Q ss_pred HHHhchHHHhhccCCccHHHHHhhhhCCH-HHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHHhH
Q 006165 133 QKMKGKIPEIAGSHVSSRVLQTCVKYCSQ-AERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHV 211 (658)
Q Consensus 133 ~~ikg~i~~la~~~~gSRvlQ~lLk~gs~-eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v 211 (658)
..+.|.+++++.|+.|||+||.-++..++ +++..||+++.+.+.+||.|.||||||||+|++|+.+|+..+...+.|++
T Consensus 175 ~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v 254 (503)
T KOG1488|consen 175 VDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHV 254 (503)
T ss_pred cccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhh-hhHHHH--------------
Q 006165 212 ASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLG-LQKASV-------------- 276 (658)
Q Consensus 212 ~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~-~kr~~i-------------- 276 (658)
..|+.|+|||||||+++++.+..+...|+.|+-+...++++|.+| ..+++++++..| +.+.-|
T Consensus 255 ~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQng--nHViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls 332 (503)
T KOG1488|consen 255 LELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNG--NHVIQKCIETLPPDAWQFIVDFFSGDDNLLELS 332 (503)
T ss_pred hhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhccc--ceehhhhhhccChHHHHHHHHHhcCCCceeEee
Confidence 999999999999999999999999999999999999999999999 667777777543 333333
Q ss_pred -HHhHHHHHHHHHhcCCCchhH--HH-----------HHHHHH-----HhhCChhHHHHHHHhcchhhHHHhhcCcchhH
Q 006165 277 -LRHMASVIQPILEKGIIDHSI--IH-----------RVLMEY-----LSMADKSSAADIIQQLSGPLLVRMIHTRDGSK 337 (658)
Q Consensus 277 -l~~~~~~iq~ileK~~~~~~l--vh-----------~~l~ey-----~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~ 337 (658)
..|+|++||.++|++..+... +- ....+| ++++.+.+...+++.|.++ ++.|+.++++|+
T Consensus 333 ~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~-ll~~Sq~KfASn 411 (503)
T KOG1488|consen 333 THKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGN-LLSMSQHKFASN 411 (503)
T ss_pred ccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhh-HHHHHHHHHHHH
Confidence 367999999999987654321 11 111223 2567787778888889887 799999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHH-------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcH
Q 006165 338 IGMLCVKHGSAKERKKIIKGMKG-------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGR 410 (658)
Q Consensus 338 Vv~~~L~~~~~K~Rk~Iik~lk~-------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr 410 (658)
|+++||.+|+..+|..|++++.+ .+..|+.|+|||||||++++.+++.. ++.|...|.+|+..|....||+
T Consensus 412 VVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q--~~~i~~rI~~h~~~Lrk~syGK 489 (503)
T KOG1488|consen 412 VVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQ--RELIKSRVKPHASRLRKFSYGK 489 (503)
T ss_pred HHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHH--HHHHHHHHHHHHHHHccCccHH
Confidence 99999999999999999999864 58899999999999999999998777 8999999999999999999999
Q ss_pred HHHHHH
Q 006165 411 RVLLQL 416 (658)
Q Consensus 411 ~Vll~L 416 (658)
+++..|
T Consensus 490 hIia~l 495 (503)
T KOG1488|consen 490 HIIAKL 495 (503)
T ss_pred HHHHHH
Confidence 999754
No 5
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=99.95 E-value=6.1e-28 Score=226.61 Aligned_cols=131 Identities=40% Similarity=0.578 Sum_probs=114.6
Q ss_pred hhCcCcHHHHHHHcCCCCCCCCCHHHHHhhhhcccccccccCcccchhhcccchhhhhhHHHHHhhhccCCCCCCCCCCC
Q 006165 404 VMDKNGRRVLLQLLHPNCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPL 483 (658)
Q Consensus 404 ~~~~~Gr~Vll~LL~~~~~r~f~p~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (658)
++|+|||+||+|||.|+|++||+|.+++.|.++. +
T Consensus 1 i~dk~gRr~llYLl~~~d~~~f~p~~i~~L~~~d---------------------------------------------~ 35 (148)
T PF08144_consen 1 INDKYGRRVLLYLLSPRDPRYFSPEIIKLLKEGD---------------------------------------------R 35 (148)
T ss_pred CCCccCceeeeeeccCCCcccCCHHHHHHHhhhc---------------------------------------------c
Confidence 3689999999999999999999999999998631 3
Q ss_pred cCCCCCChHHHHHHHHhhcCCcHHHHHHHHhcHHHHHhccCcchHHHHHHhcCCCCCcCccchhhhhHHHHHHHHHhhcc
Q 006165 484 AEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDDKLNTLHETIASLASES 563 (658)
Q Consensus 484 ~~~sKKd~~~Rr~EL~~~~~~~~~L~~~~~~~~~~ll~~~~g~~vl~e~l~~~~~~~~~~~~~d~~~~~~~ai~~~~~~~ 563 (658)
+.||||||++||+||++ +++|.|+++|++|+++|+++++||+||.|++.+.. ||+ .++++||+++++.+
T Consensus 36 ~~tSKKd~~~Rr~ELl~--~~sp~Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~--------gdk-~~a~~Aia~~~~~~ 104 (148)
T PF08144_consen 36 NATSKKDPEVRRKELLE--AISPPLLEAIAENAEELLSSSFGCQFITEILLSAT--------GDK-SAALEAIASLAAEP 104 (148)
T ss_pred cccccCCHHHHHHHHHH--HhhHHHHHHHHHhHHHHHhcCcccHHHHHHHhccC--------ccH-HHHHHHHHHHHhhc
Confidence 68999999999999999 59999999999999999999999999999998754 465 56777999988754
Q ss_pred --CCCcchhhhhhhcchhHHHHHHHHhCC
Q 006165 564 --KSEASEEEHVLENFHSSRTIRKLVMDC 590 (658)
Q Consensus 564 --~~~~~~~~~~~~~~~~~r~lk~li~~~ 590 (658)
.++..++.|++++|+|||+||+||+++
T Consensus 105 ~~~~~~~~e~H~i~~p~~~r~lK~Liq~~ 133 (148)
T PF08144_consen 105 LFPGDIDEEYHLIEHPFGHRMLKKLIQGD 133 (148)
T ss_pred cCCCCCcCccchhcCchHHHHHHHHHHCC
Confidence 223334689999999999999999987
No 6
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3e-26 Score=248.91 Aligned_cols=251 Identities=17% Similarity=0.207 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHH
Q 006165 122 ETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLA 201 (658)
Q Consensus 122 eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~ 201 (658)
+++..+.+++.. .+..++.|..|.+|||+++++|+.+|+..+...+.|++..||.|.||++||||.|++.+..+..
T Consensus 205 ~ek~~if~ei~~----~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~ 280 (503)
T KOG1488|consen 205 EEKQAVFDEILP----PALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQI 280 (503)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHH
Confidence 677766665554 6788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHH--hHHhhhcccCCCchhHHHHHHhhh-hhhHHHH--
Q 006165 202 GFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS--TELQLFKNLVSIKESRLVDVISKL-GLQKASV-- 276 (658)
Q Consensus 202 ~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g--~~~~l~~d~~g~~~~~L~~il~~~-~~kr~~i-- 276 (658)
.|+.++.+++..++.|.+|+||+|+|++..+++-...|+..|.+ +++.+..+..| +++++.+++.. .+++..|
T Consensus 281 ~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YG--CRVIQr~lE~c~~~~~~~i~~ 358 (503)
T KOG1488|consen 281 QLIDELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYG--CRVIQRILEHCSEDQKQPLME 358 (503)
T ss_pred HHHHHHHhhHHHHHhhcccceehhhhhhccChHHHHHHHHHhcCCCceeEeeccCcc--cHHHHHHhhcCChHhhhHHHH
Confidence 88888888888888888888888888888888888888888888 88888888887 88888888833 2222222
Q ss_pred -----------HHhHHHHHHHHHhcCCCc--hhHHH----------------HHHHHHHhhCChhHHHHHHHhcch----
Q 006165 277 -----------LRHMASVIQPILEKGIID--HSIIH----------------RVLMEYLSMADKSSAADIIQQLSG---- 323 (658)
Q Consensus 277 -----------l~~~~~~iq~ileK~~~~--~~lvh----------------~~l~ey~~~~~~~~~~elI~~L~~---- 323 (658)
.+|++++||++++.+... ..++. .++...|+.+.+..+..+++.+.+
T Consensus 359 ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~ 438 (503)
T KOG1488|consen 359 EIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVE 438 (503)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccC
Confidence 378899999998876432 11211 244455677899999999988732
Q ss_pred --hhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcCCchhHHHHHH
Q 006165 324 --PLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCI 378 (658)
Q Consensus 324 --~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~l 378 (658)
+.|..|+.|+||++||+++|..+++.+|+.|+..+++|+..|-...||..+|.++
T Consensus 439 ~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~h~~~Lrk~syGKhIia~l 495 (503)
T KOG1488|consen 439 HPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKPHASRLRKFSYGKHIIAKL 495 (503)
T ss_pred CccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999998875
No 7
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.8e-26 Score=260.90 Aligned_cols=233 Identities=23% Similarity=0.298 Sum_probs=205.8
Q ss_pred hccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhccccch
Q 006165 143 AGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSV 222 (658)
Q Consensus 143 a~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~ 222 (658)
++|+.|||.||+.|+--+.++...|+.++.+...+|+.|.|||||+||+|+|++.+|+..++..+.+++..|..|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 69999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC-HHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHH
Q 006165 223 VVEHAYQLGN-ATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRV 301 (658)
Q Consensus 223 Vvq~l~~~a~-~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~ 301 (658)
|+|+++++++ ..|...++.++.+....+++|.+| +.++|+++++....+
T Consensus 527 v~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqng------------------------NHviqKci~~~~~~~------ 576 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNG------------------------NHVIQKCIEKFNKEK------ 576 (777)
T ss_pred HHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccC------------------------CHHHHHHHHhcCccc------
Confidence 9999999755 555558999999999988888655 557777777654332
Q ss_pred HHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhh
Q 006165 302 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSI 381 (658)
Q Consensus 302 l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~ 381 (658)
..-+.+.+.++ +..++++++||+|+++|+++++.++...++..|..++..|++|+|||||||++++.
T Consensus 577 ------------~~fif~~~~~~-~~~is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~ 643 (777)
T COG5099 577 ------------NQFIFDSINEN-LYDLSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHILDN 643 (777)
T ss_pred ------------cchHHHHHHhh-hHhhhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHHhhc
Confidence 11234445545 57899999999999999999999999999999999999999999999999999998
Q ss_pred cCchHHHHHHHHHHHHH-HHHHhhhCcCcHHHHHHHcCCC
Q 006165 382 VDDTKLIAKIIIRELQS-IIKELVMDKNGRRVLLQLLHPN 420 (658)
Q Consensus 382 ~ddt~l~~k~I~~eL~~-~l~~L~~~~~Gr~Vll~LL~~~ 420 (658)
.-.+. ++.|+..+.. ++.+|..|+||..|++.++.-.
T Consensus 644 g~~~~--k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~ 681 (777)
T COG5099 644 GAEPN--KERIIIKLLSKRVVELSTHKFASNVVEKCIKYA 681 (777)
T ss_pred CCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 86666 6777777777 9999999999999999998854
No 8
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-22 Score=218.97 Aligned_cols=453 Identities=15% Similarity=0.173 Sum_probs=297.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHH----HHHHHHHhhcc
Q 006165 106 ELASLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEE----LQPHFLSLADN 181 (658)
Q Consensus 106 ~~k~iwE~lr~k~~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~e----L~~~~~~L~~d 181 (658)
+.|.+-...+.+. |.-++.+-+..+|+.++- +.+..+.|..++.+ ++|++..|+..
T Consensus 113 e~K~l~kerK~~r-p~~~~~qe~kslWEkLR~-------------------k~~~ke~R~klv~el~~likg~i~~lv~a 172 (652)
T KOG2050|consen 113 ERKKLLKERKSKR-PTYEISQEAKSLWEKLRR-------------------KTTPKEERDKLVSELYKLIKGKISKLVFA 172 (652)
T ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-------------------cCCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344433333333 555777778888877632 23466788766666 46899999999
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhH
Q 006165 182 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESR 261 (658)
Q Consensus 182 ~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~ 261 (658)
+..++|||+|+.||++++|+.|++++.|.++.|+..+||-++|++++.++++.|+..|+.+|||+...|+++..| ...
T Consensus 173 HDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~ea--a~V 250 (652)
T KOG2050|consen 173 HDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREA--AYV 250 (652)
T ss_pred hhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877 677
Q ss_pred HHHHHhh--hhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCc-ch---
Q 006165 262 LVDVISK--LGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTR-DG--- 335 (658)
Q Consensus 262 L~~il~~--~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk-~G--- 335 (658)
+.+.+.. +++||..+++.+.+....++.- .-.-+ +..++. -.|+.+.-|+..|.+. |..++.-. -|
T Consensus 251 ve~ay~~~A~l~Qr~~li~EfYG~efqlfK~-sn~~T-l~kil~-----~~pekk~~I~~~l~~~-I~~v~eKg~v~~ti 322 (652)
T KOG2050|consen 251 VEYAYNDFATLEQRQYLIQEFYGDEFQLFKD-SNDKT-LDKILA-----EAPEKKASILRHLKAI-ITPVAEKGSVDHTI 322 (652)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhHHHHHHhc-cCccc-HHHHHH-----hChHhHHHHHHHHHHH-hHHHhhcchhHHHH
Confidence 7777774 6899999999998888777643 11111 111111 1344455555555432 22222210 01
Q ss_pred -hHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHH
Q 006165 336 -SKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414 (658)
Q Consensus 336 -S~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll 414 (658)
-.++.-.|.+|+++.+..++..++..+..|+..+-|+.|.+.++....... |+.|+..|.+++..++.+.||+.|++
T Consensus 323 vHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKe--RK~IiK~~K~h~~K~A~~~yGh~vli 400 (652)
T KOG2050|consen 323 VHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKE--RKLIIKNMKEHVEKIANDEYGHLVLI 400 (652)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHH--HHHHHHHHHHHHHHHHhhccCceehh
Confidence 145666788999999999999999999999999999999999999988777 99999999999999999999999999
Q ss_pred HHcCC-CCCCCCCHHHHHhhhhcccccccccCcccchhhcccchhhhhhHHHHHhhhccCCCCCCCCCCCcCCCCCChHH
Q 006165 415 QLLHP-NCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRV 493 (658)
Q Consensus 415 ~LL~~-~~~r~f~p~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sKKd~~~ 493 (658)
.+|+. .|+..+-..++..+.+..++|+..+-++.. +.+ +..|-+ ..=-+|+.
T Consensus 401 a~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv--------~ly---------ll~p~D----------~~~f~~e~ 453 (652)
T KOG2050|consen 401 ALLDCTDDTKLLKKLIYDELKSELKSLISDKYGRRV--------ILY---------LLAPRD----------GRYFVPEF 453 (652)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhccchhhhh--------hhh---------hccCCc----------cccccHHH
Confidence 99999 566555555566565544444333321111 000 001100 01123555
Q ss_pred HHHHHHhhcC-----CcH------HHHHHHHhcHHHHHhccCcchHHHHHHhcC--CCCCcCccchhhhhHHHHHHHHHh
Q 006165 494 RRQELLVSSG-----LAE------SMIDVCIENAGELLRSNFGKEVLYEVAKGG--SDDILRPTLDDKLNTLHETIASLA 560 (658)
Q Consensus 494 Rr~EL~~~~~-----~~~------~L~~~~~~~~~~ll~~~~g~~vl~e~l~~~--~~~~~~~~~~d~~~~~~~ai~~~~ 560 (658)
+ |++.+-. --+ .|+..+..+.-.++..++ ..+|.+.+-.. ++..+....||....=.++.+..+
T Consensus 454 i--e~l~~~d~~k~sKKdp~vRr~eLla~isp~lis~~s~~a-eeil~e~~~~~~lV~~~l~~~~~~~d~~~~q~~a~a~ 530 (652)
T KOG2050|consen 454 I--EVLEELDSNKHSKKDPLVRRIELLAAISPSLISLLSENA-EEILAEALKSQVLVEASLGAEDGDKDPDEKQAAAEAA 530 (652)
T ss_pred H--HHHHhcccccccccCHHHHHHHHHHhhhHHHHHHHHHhH-HHHHHHhhcceeeHHhhhcCcccccChhhHHHHHHHH
Confidence 5 6665311 112 344445555556665443 44454444332 233343344443322233333222
Q ss_pred h-ccCCCcchhhhhhhcchhHHHHHHHHhCCchhHHHHHHHhhhhhhhhhccccchhHhHHhhcCCCH
Q 006165 561 S-ESKSEASEEEHVLENFHSSRTIRKLVMDCPKFASTLWKNALKGKSEFWAQGHSCKVVTAFLESSDF 627 (658)
Q Consensus 561 ~-~~~~~~~~~~~~~~~~~~~r~lk~li~~~~~F~~~l~~~~~~~~~~~wa~~~g~~vv~alle~~~~ 627 (658)
. ......++..|++..-+..+....|.+++. |.. +...-..-..+.|.+|-..|+|..+.
T Consensus 531 l~~~~~~~~~~~~p~h~~~~~~~~~il~q~g~------w~~-~~~k~~~~~~~~g~~~~k~l~e~l~s 591 (652)
T KOG2050|consen 531 LPAFKAIPEEAKKPKHQEEEPAAHLILGQEGA------WMH-IEKKRILKNNREGEGVPKLLLENLSS 591 (652)
T ss_pred HHHhccCcccccCCcchhcccchhhHHhcccc------chh-HHHHHHhhhcCCccccHHHHHHHhhH
Confidence 1 222334445677777788888888877662 222 11111112234566665666666553
No 9
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.1e-24 Score=236.66 Aligned_cols=243 Identities=19% Similarity=0.260 Sum_probs=211.7
Q ss_pred HHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHH---
Q 006165 133 QKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHG--- 209 (658)
Q Consensus 133 ~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g--- 209 (658)
..+.|.+.-+|.++.|||++|.++..++...-..|+.++..++.+|+.|.||++++|+|++.|+.+|+..|+..+..
T Consensus 213 ~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~ 292 (536)
T KOG2049|consen 213 VEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPR 292 (536)
T ss_pred hccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCcc
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hHHHHhhccccchHHHHHHhh-CCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHHHHH
Q 006165 210 HVASLLRHMVGSVVVEHAYQL-GNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPIL 288 (658)
Q Consensus 210 ~v~~L~~h~~Gs~Vvq~l~~~-a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq~il 288 (658)
.+..++.++||+++||++++. .+.+|...++..+......|.+|.+| +++|++++
T Consensus 293 ~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g------------------------~~Viq~cl 348 (536)
T KOG2049|consen 293 LFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNG------------------------NHVIQRCL 348 (536)
T ss_pred ceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcch------------------------hHHHHHHH
Confidence 699999999999999999984 67778888888888888888888654 66677766
Q ss_pred hcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcC
Q 006165 289 EKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHD 368 (658)
Q Consensus 289 eK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d 368 (658)
+.-. ++...-+.+.+. .+...+|.++.|+.|+++||.++...+|..++..+..+...|+.|
T Consensus 349 ~~f~------------------~~~~~~l~e~i~-~~c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d 409 (536)
T KOG2049|consen 349 RVFS------------------KEKNEFLYEAIL-RYCLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSND 409 (536)
T ss_pred HhcC------------------chhhhHHHHHHH-HHHHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcC
Confidence 5322 122333444444 347899999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHHHcCCC
Q 006165 369 QCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPN 420 (658)
Q Consensus 369 ~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~~ 420 (658)
+|||||||++++--+... ...|+..|.++..+|+..+||++|+..||.-+
T Consensus 410 ~~GNyvVQyvl~L~~~~~--t~~i~~~L~g~~veLS~qKfgS~vVEk~L~~~ 459 (536)
T KOG2049|consen 410 PYGNYVVQYVLELNDPSC--TVNIAEKLRGHYVELSFQKFGSHVVEKLLKVR 459 (536)
T ss_pred ccccchhhhhhhhcCcch--HHHHHHhhhhHHHHHHHHhhccHHHHHHHhcC
Confidence 999999999998765543 46789999999999999999999999999864
No 10
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.3e-22 Score=222.44 Aligned_cols=281 Identities=16% Similarity=0.274 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHH---HHHHhhcccchhHHHHHHHhcC-CHHHH
Q 006165 125 SKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQP---HFLSLADNTYAVHLVKKMLDNA-SKKQL 200 (658)
Q Consensus 125 ~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~---~~~~L~~d~yg~~vVqKLl~~~-s~eqr 200 (658)
..-+..++.++...+.++..++.|..++|+++..|+.+||..|..-|.. .|+.+|.+.||++.||+|++.. +.+|.
T Consensus 241 ~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI 320 (536)
T KOG2049|consen 241 KVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEICTNMYGTRAVQKLLGKSDSVDQI 320 (536)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEeeecCchhHHHHHHHhccccHHHH
Confidence 3446667788888999999999999999999999999999999998875 6999999999999999999876 55688
Q ss_pred HHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHh-hhhhhHHHHHHh
Q 006165 201 AGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS-KLGLQKASVLRH 279 (658)
Q Consensus 201 ~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~-~~~~kr~~il~~ 279 (658)
..+++.+.+.+..|+++.||.||++.|+...++.+...+..........+..+.+| +..|..+|. ...++|..++..
T Consensus 321 ~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~iA~~~hG--CcvLq~cl~~~~~~~rd~Lv~~ 398 (536)
T KOG2049|consen 321 SLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDLATDQHG--CCVLQKCLDYSRGEQRDRLVEE 398 (536)
T ss_pred HHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHhccc--cchhHHHhcchhHHHHHHHHHH
Confidence 88999999999999999999999999999888888888888888888888888888 888888888 445666666554
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHH
Q 006165 280 MASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 359 (658)
Q Consensus 280 ~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk 359 (658)
+...--.+.+. ..++.++|.++. .-++.....++..|.+. .++|+..++||+||++||.++.... ..|+..|.
T Consensus 399 i~~naL~Ls~d-~~GNyvVQyvl~----L~~~~~t~~i~~~L~g~-~veLS~qKfgS~vVEk~L~~~~~~~-~~iV~ell 471 (536)
T KOG2049|consen 399 ISRNALLLSND-PYGNYVVQYVLE----LNDPSCTVNIAEKLRGH-YVELSFQKFGSHVVEKLLKVRESSR-AQIVLELL 471 (536)
T ss_pred HHHHhHhhhcC-ccccchhhhhhh----hcCcchHHHHHHhhhhH-HHHHHHHhhccHHHHHHHhcCcchh-hHHHHHHH
Confidence 44333222221 223322222221 12233356788889988 5999999999999999999886644 66777766
Q ss_pred H--HHHhhhcCCchhHHHHHHHhhcCc--hHHHHHHHHHHHHHHHHHhhhCcCcHHHHH
Q 006165 360 G--HIGKVAHDQCGSMVLLCIVSIVDD--TKLIAKIIIRELQSIIKELVMDKNGRRVLL 414 (658)
Q Consensus 360 ~--~l~~La~d~~G~~Vlq~lL~~~dd--t~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll 414 (658)
. ++..|+.|+|||||||++|+.+.. ...++..++..+...+..|...++|.++..
T Consensus 472 ~~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~ 530 (536)
T KOG2049|consen 472 SCDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALI 530 (536)
T ss_pred ccccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeee
Confidence 6 999999999999999999999864 112467788888888999999999988764
No 11
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.4e-22 Score=232.47 Aligned_cols=265 Identities=17% Similarity=0.286 Sum_probs=213.6
Q ss_pred HHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHH-HHHHHHHH
Q 006165 128 ISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK-QLAGFISA 206 (658)
Q Consensus 128 v~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~e-qr~~Ii~~ 206 (658)
++.++.++.....+++.+.+|.+++|++++||+++||......+.+++..|+.+.||+|++||++++.+.+ |...|+.+
T Consensus 468 ~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~ 547 (777)
T COG5099 468 IEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEE 547 (777)
T ss_pred HHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHH
Confidence 55566777888899999999999999999999999999999999999999999999999999999998665 55589999
Q ss_pred HHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhh-hhhHHHHH--------
Q 006165 207 LHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKL-GLQKASVL-------- 277 (658)
Q Consensus 207 ~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~-~~kr~~il-------- 277 (658)
+.+++..|+.|.+|+||+|+|++....+....+...+.++.+.+..+..| ++.++.+++.. .+....+.
T Consensus 548 l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~G--s~vvq~~le~~~~~~~~~~~~~Ii~~~~ 625 (777)
T COG5099 548 LRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYG--SRVVQRCLENCNSEDKENLVEEIISNSK 625 (777)
T ss_pred hhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccc--cHHHHHHHHhccHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877778888888888888888888 78888888733 22222221
Q ss_pred -----HhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHH-H
Q 006165 278 -----RHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKE-R 351 (658)
Q Consensus 278 -----~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~-R 351 (658)
++|++++|++++.+.. .....++..+....+++++.+++||.||++||.++...+ |
T Consensus 626 ~L~~dq~GNyvvq~il~~g~~------------------~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~~~ 687 (777)
T COG5099 626 YLSQDQYGNYVVQHILDNGAE------------------PNKERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSFKR 687 (777)
T ss_pred hhccCCcchhhhhHHhhcCCC------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555554433 334444444433247899999999999999999998887 5
Q ss_pred HHHHHHHHH-------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHH
Q 006165 352 KKIIKGMKG-------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414 (658)
Q Consensus 352 k~Iik~lk~-------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll 414 (658)
..|+..+.. .+..|+.|.|||||+|++++..+... +..+..-+..++..|...+||++++.
T Consensus 688 ~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~--~~l~~~~i~~~~~~l~~s~~g~~i~~ 755 (777)
T COG5099 688 SRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQ--RSLLARAIKKVIPSLKKSMYGQHILA 755 (777)
T ss_pred HHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhh--HHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 889888764 48899999999999999999987665 45555566778888888999999884
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2e-21 Score=211.50 Aligned_cols=456 Identities=17% Similarity=0.194 Sum_probs=291.8
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhccc
Q 006165 104 ELELASLWEKMRQRNIAKETRSKLISE-ALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNT 182 (658)
Q Consensus 104 ~~~~k~iwE~lr~k~~~~eeR~~lv~~-l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~ 182 (658)
..++.++-..++.....-+||...+.+ +|++..|+..+++.++-+|.++|.++.+++..|...+|.++.|++..|++|+
T Consensus 65 ~~YF~~a~~a~~~~~~~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r 144 (650)
T KOG2188|consen 65 LGYFRRAESAFKGGFERGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHR 144 (650)
T ss_pred hhHHHHHHHHhhcCccccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHH
Confidence 467888888888887777788877777 9999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcCC--------------------------HHHHHHHHHHHHHhHH-HHhhccccchHHHHHHhhCCH--
Q 006165 183 YAVHLVKKMLDNAS--------------------------KKQLAGFISALHGHVA-SLLRHMVGSVVVEHAYQLGNA-- 233 (658)
Q Consensus 183 yg~~vVqKLl~~~s--------------------------~eqr~~Ii~~~~g~v~-~L~~h~~Gs~Vvq~l~~~a~~-- 233 (658)
||+||+|++|.... ++....+..++.+++. .|+.|.||+||+..++..+..
T Consensus 145 ~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~ 224 (650)
T KOG2188|consen 145 FGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMC 224 (650)
T ss_pred HHHHHHHHHHHHHHHHhCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCc
Confidence 99999999997521 0123457889999999 999999999999999974221
Q ss_pred ---HHHHHHHHHHHHhHHhhhcccCC------CchhHHHHHHhh----hh--------hhHH-HHHHhHHHHHHHHHhcC
Q 006165 234 ---TQKQELLVELYSTELQLFKNLVS------IKESRLVDVISK----LG--------LQKA-SVLRHMASVIQPILEKG 291 (658)
Q Consensus 234 ---~qr~~li~e~~g~~~~l~~d~~g------~~~~~L~~il~~----~~--------~kr~-~il~~~~~~iq~ileK~ 291 (658)
.-...+..++..+.- ..+.+. +.+..+..++.. .+ ..+. .+.+++..++|.++.-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~ 302 (650)
T KOG2188|consen 225 PIAESEHKLALRKAAHRG--MDDWDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLA 302 (650)
T ss_pred chhhhHHHHHHHHHhhcc--ccchhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222211100 001000 012222222221 01 1111 13344555555543210
Q ss_pred C---CchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhhhcC
Q 006165 292 I---IDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHD 368 (658)
Q Consensus 292 ~---~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~La~d 368 (658)
- ......+. +..++.+......+-.....++++..+..++.|||+++.++..++++.+..+...|.+.+.+||.|
T Consensus 303 ~~~~~~~~~~~~--~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~ 380 (650)
T KOG2188|consen 303 FDENKNDQFMES--PRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVH 380 (650)
T ss_pred hhhhcchhhhhh--hhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00011110 001111000000000000123445666779999999999999999999988888899999999999
Q ss_pred CchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHHHcCCCCCCC--CCHHHHHhhhhcccccccccCc
Q 006165 369 QCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRY--LSPDDLSSLNLSIPSLCAKEGS 446 (658)
Q Consensus 369 ~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~~~~r~--f~p~~~~~L~~~~~~l~~~~~~ 446 (658)
+.|||+||++++++.+... -..|+.||.+++..|....|.--|.. |+.. +.|+ ....+++.|-.. +++.+
T Consensus 381 p~aNF~lQrli~h~~~~e~-v~~v~eeL~P~~~~LL~~g~~gVv~s-Lia~-~~rl~s~q~~~l~~Li~a---~~~~~-- 452 (650)
T KOG2188|consen 381 PIANFPLQRLINHLTSLED-VGSVIEELAPKLSSLLEQGNSGVVAS-LIAA-SARLGSYQDKMLQQLIQA---FHAAS-- 452 (650)
T ss_pred ccccchHHHHHHhccCHHH-HHHHHHHHhHHHHHHHHcCCchHhHH-HHHH-HHhhchhHHHHHHHHHHH---HhcCC--
Confidence 9999999999999986665 67899999999999998877654442 2222 2221 122234433321 11111
Q ss_pred ccchhhcccchhhhhhHHHHHhhhccCCCCCCCCCCCcCCCCCChHHHHHHHHhhcCCcHHHHHHHHhcHHHHHh----c
Q 006165 447 EVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLR----S 522 (658)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sKKd~~~Rr~EL~~~~~~~~~L~~~~~~~~~~ll~----~ 522 (658)
.++|..--+ || +......++.+|-. .
T Consensus 453 ---------------------------------------~~~k~il~~---lL--------~~~~~~g~~~~~~~t~~~h 482 (650)
T KOG2188|consen 453 ---------------------------------------ESKKNILPC---LL--------FSLTLFGCVGEWFLTEKFH 482 (650)
T ss_pred ---------------------------------------hhhcchHHH---HH--------HHhhhcccccccccHHHHh
Confidence 122211110 11 11111122222211 1
Q ss_pred cCcchHHHHHHhcCCCCCcCccchhhhhHHHHHHHHHhhccCCCcchhhhhh---hcchhHHHHHHHHhC---CchhHHH
Q 006165 523 NFGKEVLYEVAKGGSDDILRPTLDDKLNTLHETIASLASESKSEASEEEHVL---ENFHSSRTIRKLVMD---CPKFAST 596 (658)
Q Consensus 523 ~~g~~vl~e~l~~~~~~~~~~~~~d~~~~~~~ai~~~~~~~~~~~~~~~~~~---~~~~~~r~lk~li~~---~~~F~~~ 596 (658)
-.||.++.+++-... +.+..+.+.+.++. +++++ .++++||++...++. ++.+.++
T Consensus 483 ~~ga~lle~lv~f~k---------~~i~~litsll~L~---------~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~k 544 (650)
T KOG2188|consen 483 QKGAVLLEELVNFSK---------THIQTLITSLLSLS---------EEQILEMSCNGVGSHLIEAVLASKDLGEKIKEK 544 (650)
T ss_pred hchhHHHHHHHhhch---------hhhHHHHHHHHhhh---------HHHHHHHhcCCchHHHHHHHHHhccccHHHHHH
Confidence 247777777775431 22344545554332 24544 479999999998887 3799999
Q ss_pred HHHHhhhhhhhhhccc-cchhHhHHhhcCCCHHHHHHHHHhhccc
Q 006165 597 LWKNALKGKSEFWAQG-HSCKVVTAFLESSDFKVRELAKTELQPL 640 (658)
Q Consensus 597 l~~~~~~~~~~~wa~~-~g~~vv~alle~~~~~~~~~~~~~l~~~ 640 (658)
|.+. +.+.-.++|.. +||+|+--+++..+..-+.++-++|..-
T Consensus 545 Li~~-l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~ 588 (650)
T KOG2188|consen 545 LINI-LDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGI 588 (650)
T ss_pred HHHH-hhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9987 78888888876 8999999999999988888888888763
No 13
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.1e-16 Score=170.29 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=179.6
Q ss_pred HHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCC-HHHHHHHHHHHHHhHHHHhhcc
Q 006165 140 PEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNAS-KKQLAGFISALHGHVASLLRHM 218 (658)
Q Consensus 140 ~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s-~eqr~~Ii~~~~g~v~~L~~h~ 218 (658)
..+-.|+.|||+++.++..+++.-+..++..+.+.+.+||.++.|||+||+||++.+ .++...|++++.+++..|..+.
T Consensus 339 k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g 418 (650)
T KOG2188|consen 339 KELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQG 418 (650)
T ss_pred HHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcC
Confidence 344457999999999999999999987888899999999999999999999999987 8899999999999999999998
Q ss_pred ccchHHHHHHhhCC--HHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhh-----HHHHHHhHHHHHHHHHhcC
Q 006165 219 VGSVVVEHAYQLGN--ATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQ-----KASVLRHMASVIQPILEKG 291 (658)
Q Consensus 219 ~Gs~Vvq~l~~~a~--~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~k-----r~~il~~~~~~iq~ileK~ 291 (658)
+.. |+..++..+. +..+..|++.+.+..+.- .+...+...++.....-+... -....+.++-.++.+++
T Consensus 419 ~~g-Vv~sLia~~~rl~s~q~~~l~~Li~a~~~~-~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~-- 494 (650)
T KOG2188|consen 419 NSG-VVASLIAASARLGSYQDKMLQQLIQAFHAA-SESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVN-- 494 (650)
T ss_pred Cch-HhHHHHHHHHhhchhHHHHHHHHHHHHhcC-ChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHh--
Confidence 876 5556664321 112233333332221111 000000000111111000000 00011122222222222
Q ss_pred CCchhHHHHHHHHHHhhCChhHHHHH---HHhcchhhHHHhhcCcchhHHHHHHHhh--CCHHHHHHHHHHHHHHHHhhh
Q 006165 292 IIDHSIIHRVLMEYLSMADKSSAADI---IQQLSGPLLVRMIHTRDGSKIGMLCVKH--GSAKERKKIIKGMKGHIGKVA 366 (658)
Q Consensus 292 ~~~~~lvh~~l~ey~~~~~~~~~~el---I~~L~~~~l~~L~~tk~GS~Vv~~~L~~--~~~K~Rk~Iik~lk~~l~~La 366 (658)
.+...+.-+ +..|....|.+|+.+.+||||++.+|.. .+++.++.||..|.+++.+|+
T Consensus 495 -----------------f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La 557 (650)
T KOG2188|consen 495 -----------------FSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLA 557 (650)
T ss_pred -----------------hchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchhee
Confidence 222222222 3334556689999999999999999987 689999999999999999999
Q ss_pred cCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHH
Q 006165 367 HDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQ 415 (658)
Q Consensus 367 ~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~ 415 (658)
.+.||++|+.++|+.++++. +..|..||...-..+..++||+.|+..
T Consensus 558 ~~~~GSrv~eK~wea~~~~~--k~rIakeL~~~~~~vk~s~~gk~v~~~ 604 (650)
T KOG2188|consen 558 LSTFGSRVFEKCWEATDVLY--KERIAKELVGIHNDVKSSKYGKFVMLN 604 (650)
T ss_pred ecCcccHHHHHHHHHhhHHH--HHHHHHHHHhhccccccCcchHHHHHh
Confidence 99999999999999999554 899999999999999999999999964
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=98.65 E-value=1e-07 Score=107.57 Aligned_cols=271 Identities=14% Similarity=0.155 Sum_probs=139.7
Q ss_pred hHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHH-HHHHHHHHHHHhHHHHhh
Q 006165 138 KIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK-QLAGFISALHGHVASLLR 216 (658)
Q Consensus 138 ~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~e-qr~~Ii~~~~g~v~~L~~ 216 (658)
+..++..+..|.-|+|++.++++...++.........+..+..|+||.+.+||+++.+..+ |...|+.-..+..-.|+.
T Consensus 547 e~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~ 626 (1007)
T KOG4574|consen 547 ELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLN 626 (1007)
T ss_pred cCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHH
Confidence 3345555555666666666666665555555555556666666666666666666655332 555555555555556666
Q ss_pred ccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhh---hhhhHHHHHHhHHHHHHHHHhcCCC
Q 006165 217 HMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK---LGLQKASVLRHMASVIQPILEKGII 293 (658)
Q Consensus 217 h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~---~~~kr~~il~~~~~~iq~ileK~~~ 293 (658)
+.||+||+|+++.++-+-- ..+.++.|.+...+.....| .+.+..+|+. .++......+.+.-.....+.-...
T Consensus 627 dqfgnyvaqd~LkF~fp~n-sFVfE~v~s~~~~ivQsrfG--sravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsn 703 (1007)
T KOG4574|consen 627 DQFGNYVAQDSLKFGFPWN-SFVFESVFSHFWDIVQSRFG--SRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSN 703 (1007)
T ss_pred HhhcceeeeeehhccCccc-hHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCc
Confidence 6666666666665322110 01223333333333333333 2333333331 1111110000000000000000000
Q ss_pred chhHHHHHHHHHHh--hCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHH-HHHHHHHHHH----------
Q 006165 294 DHSIIHRVLMEYLS--MADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKE-RKKIIKGMKG---------- 360 (658)
Q Consensus 294 ~~~lvh~~l~ey~~--~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~-Rk~Iik~lk~---------- 360 (658)
+- ++..|+. ..-+..-..++..+.++ +..+|.|+-|+-++.+++.+..... |+.|++.|..
T Consensus 704 g~-----llvtw~lDns~~~nrh~~l~~~lt~e-l~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~kd~~lt 777 (1007)
T KOG4574|consen 704 GL-----LLVTWLLDNSSLPNRHTILAHGLTKE-LVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFKDSALT 777 (1007)
T ss_pred cc-----eeeeeecccccccchhhHHhhhhhhc-cchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccccchhh
Confidence 00 0111110 00111122334444444 6889999999999999999876555 8888888652
Q ss_pred --------------------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHHHcCCC
Q 006165 361 --------------------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPN 420 (658)
Q Consensus 361 --------------------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~~ 420 (658)
.+.....++++.+|.+.|++...... ..+..|...+--++.++||.+-+..++...
T Consensus 778 ~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~n----arv~~LleevgliSasksgs~s~q~~~sss 853 (1007)
T KOG4574|consen 778 EVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSN----ARVQRLLEEVGLISASKSGSQSIQMHISSS 853 (1007)
T ss_pred hhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHhhhccccchhHHHHhhhccC
Confidence 34455567888888888887643322 223556666777788899999888777654
Q ss_pred C
Q 006165 421 C 421 (658)
Q Consensus 421 ~ 421 (658)
+
T Consensus 854 ~ 854 (1007)
T KOG4574|consen 854 K 854 (1007)
T ss_pred C
Confidence 3
No 15
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.29 E-value=4.2e-07 Score=64.15 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHH
Q 006165 170 ELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFI 204 (658)
Q Consensus 170 eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii 204 (658)
++.|++.+||+|+|||||||++|++++++++..|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 36678888888888888888888888888877664
No 16
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=99.15 Aligned_cols=221 Identities=13% Similarity=0.119 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHHHHHhHHHHhhccccchHHHHHHhhC-CHHHHHH
Q 006165 160 SQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLG-NATQKQE 238 (658)
Q Consensus 160 s~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a-~~~qr~~ 238 (658)
+..+...+.-+..+...++.-+--|+-|+|++|++++...++.+...--.++..+..|.||.|++|++++.+ ++.|...
T Consensus 533 S~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~ 612 (1007)
T KOG4574|consen 533 SAPEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKL 612 (1007)
T ss_pred cchhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhe
Confidence 445566677777888899999999999999999999999999999999999999999999999999999864 5555444
Q ss_pred HHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHH-----------------H
Q 006165 239 LLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHR-----------------V 301 (658)
Q Consensus 239 li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~-----------------~ 301 (658)
+++..-.....++.+ +++++++|.++.++....+++-. .
T Consensus 613 iv~g~dpyc~~l~~d------------------------qfgnyvaqd~LkF~fp~nsFVfE~v~s~~~~ivQsrfGsra 668 (1007)
T KOG4574|consen 613 IVRGVDPYCTPLLND------------------------QFGNYVAQDSLKFGFPWNSFVFESVFSHFWDIVQSRFGSRA 668 (1007)
T ss_pred eeeccCcchhhHHHH------------------------hhcceeeeeehhccCccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 433322222222333 44445555555554444433311 1
Q ss_pred HHHHHh--hCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHH-HHHHHHHHhhhcCCchhHHHHHH
Q 006165 302 LMEYLS--MADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKII-KGMKGHIGKVAHDQCGSMVLLCI 378 (658)
Q Consensus 302 l~ey~~--~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Ii-k~lk~~l~~La~d~~G~~Vlq~l 378 (658)
++..++ .+..++-.-.++.+.-...-.++.+-.|...+.++++.+.--.|..+. ..+-+++..+|.|.-|+.+++++
T Consensus 669 vrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl 748 (1007)
T KOG4574|consen 669 VRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKL 748 (1007)
T ss_pred HHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhh
Confidence 111111 111222222222221111234556667777777777766554444443 33568899999999999999999
Q ss_pred HhhcCchHHHHHHHHHHHHHHHHHhhhCcCc
Q 006165 379 VSIVDDTKLIAKIIIRELQSIIKELVMDKNG 409 (658)
Q Consensus 379 L~~~ddt~l~~k~I~~eL~~~l~~L~~~~~G 409 (658)
++...|.+. ++.| ++++..+...+-+
T Consensus 749 ~n~~qepvs-~eki----i~hlf~~~n~kd~ 774 (1007)
T KOG4574|consen 749 LNLRQEPVS-REKI----IEHLFHLRNFKDS 774 (1007)
T ss_pred hhcCCChHH-HHHH----HHHHhhccccccc
Confidence 999988872 4444 4455555555445
No 17
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.99 E-value=3.9e-06 Score=58.92 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=26.1
Q ss_pred HHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHH
Q 006165 171 LQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFI 204 (658)
Q Consensus 171 L~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii 204 (658)
+.+++.+||.|+||+||||++|+++++.++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 4677788888888888888888888777776664
No 18
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.78 E-value=2.1e-05 Score=55.43 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=31.9
Q ss_pred HhchHHHhhccCCccHHHHHhhhhCCHHHHHHHH
Q 006165 135 MKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVF 168 (658)
Q Consensus 135 ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~ 168 (658)
+.|++.+++.+++||||||++|+++++++++.|+
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 6789999999999999999999999999998875
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.59 E-value=4.5e-05 Score=53.38 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=31.6
Q ss_pred HhchHHHhhccCCccHHHHHhhhhCCHHHHHHHH
Q 006165 135 MKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVF 168 (658)
Q Consensus 135 ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~ 168 (658)
+++++.+|+.+++||||||++|+++++.++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 4688999999999999999999999999998886
No 20
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=1.1e+02 Score=36.12 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHhhcccchhHHHHHHHhcCCH--HHHHHHHHHHHHhHHHHhhccccchHHHHHHh
Q 006165 172 QPHFLSLADNTYAVHLVKKMLDNASK--KQLAGFISALHGHVASLLRHMVGSVVVEHAYQ 229 (658)
Q Consensus 172 ~~~~~~L~~d~yg~~vVqKLl~~~s~--eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~ 229 (658)
.|-|..|+.+.--|+++.|+|+.-.. ..-..+-..+.+.+..|+....|-.++=.|++
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 36788999999999999998874311 01123445555666667766666666665654
No 21
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=77.27 E-value=1.1e+02 Score=32.99 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=24.6
Q ss_pred cCcchhHHHHHHHhhCCHHHHHHHHHHHHHH
Q 006165 331 HTRDGSKIGMLCVKHGSAKERKKIIKGMKGH 361 (658)
Q Consensus 331 ~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~ 361 (658)
....|...+-.+|...+....+.|+..|...
T Consensus 199 ~~~~g~~~~a~Iln~~~~~~~~~il~~L~~~ 229 (339)
T PRK05686 199 TKMGGVKTVAEILNNLDRQTEKTILESLEEE 229 (339)
T ss_pred cccCcHHHHHHHHhcCCchHHHHHHHHHHhh
Confidence 3457888888899888888888888888753
No 22
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=75.15 E-value=1.3e+02 Score=32.60 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=23.4
Q ss_pred cchhHHHHHHHhhCCHHHHHHHHHHHHHH
Q 006165 333 RDGSKIGMLCVKHGSAKERKKIIKGMKGH 361 (658)
Q Consensus 333 k~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~ 361 (658)
..|...+-.+|...+...++.|+..|...
T Consensus 198 ~gG~~~~a~ILN~~~~~~~~~il~~L~~~ 226 (338)
T TIGR00207 198 MGGVRAVAEIINLMDRKTEKTIITSLEEF 226 (338)
T ss_pred CChHHHHHHHHHhCCchHHHHHHHHHHHh
Confidence 46778888899888888888888888754
No 23
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=73.54 E-value=16 Score=34.64 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=26.2
Q ss_pred HHHHHHhchHHHhhccCCccHHHHHhhhhCCHH
Q 006165 130 EALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQA 162 (658)
Q Consensus 130 ~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~e 162 (658)
.+++.+..+..+++.+..||.+|..+|.+++.+
T Consensus 57 ~Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gd 89 (148)
T PF08144_consen 57 PLLEAIAENAEELLSSSFGCQFITEILLSATGD 89 (148)
T ss_pred HHHHHHHHhHHHHHhcCcccHHHHHHHhccCcc
Confidence 345667778889999999999999999887654
No 24
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=49.39 E-value=38 Score=41.16 Aligned_cols=92 Identities=12% Similarity=0.186 Sum_probs=60.5
Q ss_pred hHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHH-----------------Hhh----cccchhHHHHHHHhcCC
Q 006165 138 KIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFL-----------------SLA----DNTYAVHLVKKMLDNAS 196 (658)
Q Consensus 138 ~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~-----------------~L~----~d~yg~~vVqKLl~~~s 196 (658)
.++.+..-.-|-++|-+++.+-+.+++..|+..|.-++- .+. .+-|-..|+.-|+.|.+
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 355677777799999999999999999999999988883 232 24455556655555554
Q ss_pred HHHHHHHHHH---H--HHhHHHHhhccccchHHHHHHh
Q 006165 197 KKQLAGFISA---L--HGHVASLLRHMVGSVVVEHAYQ 229 (658)
Q Consensus 197 ~eqr~~Ii~~---~--~g~v~~L~~h~~Gs~Vvq~l~~ 229 (658)
......|+.- | ..++..++++++|--+|-.++.
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~lls 693 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLS 693 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHH
Confidence 4333333211 1 3567788888888888877775
No 25
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=38.71 E-value=2.9e+02 Score=32.48 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHhcc------------CCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 006165 79 KRELRLRAKELAEARKKKR------------KRHYDLELELASLWEKMRQRNIAKETRSKLISEALQKM 135 (658)
Q Consensus 79 ~~e~~~~~kel~~~rk~~~------------k~~~~~~~~~k~iwE~lr~k~~~~eeR~~lv~~l~~~i 135 (658)
.-+-|-..++|..+|+... .-.|..+-....+...+|..++..+.+..+++++|..+
T Consensus 403 ~~lLh~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v 471 (930)
T KOG3682|consen 403 MELLHRKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRV 471 (930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHH
Confidence 4567788888888887644 23456666778888899988999999999999999766
No 26
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=37.57 E-value=8.3e+02 Score=29.66 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=41.7
Q ss_pred ccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHH
Q 006165 148 SSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFIS 205 (658)
Q Consensus 148 gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~ 205 (658)
+-...|-||+|--..+...+++-|+-|+-.++++++.++. +...+++..+..++
T Consensus 180 a~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~----v~Ln~~Etlql~LD 233 (988)
T KOG2072|consen 180 ARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTR----VDLNDPETLQLYLD 233 (988)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcC----CCCCCHHHHHHHHH
Confidence 4456788999988888899999999999999999999653 45566665554444
No 27
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=36.98 E-value=3.4e+02 Score=30.44 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCHH-----HHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchHH--HHHHHHHHHHHHHHHhhhCcCc
Q 006165 337 KIGMLCVKHGSAK-----ERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKL--IAKIIIRELQSIIKELVMDKNG 409 (658)
Q Consensus 337 ~Vv~~~L~~~~~K-----~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l--~~k~I~~eL~~~l~~L~~~~~G 409 (658)
++++..+.+++.. ....|+..|..-+..=+.|.||-++++.++..++...+ .-+.|+.-|...+..-...+|-
T Consensus 181 rLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~ 260 (435)
T PF03378_consen 181 RLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFV 260 (435)
T ss_dssp HHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHH
T ss_pred HHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHH
Confidence 4555555444321 22344444444444445677888999999988876432 1234444455555444444555
Q ss_pred HHHHH
Q 006165 410 RRVLL 414 (658)
Q Consensus 410 r~Vll 414 (658)
+..+.
T Consensus 261 ~~fv~ 265 (435)
T PF03378_consen 261 KRFVV 265 (435)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 28
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.45 E-value=8.6e+02 Score=29.56 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=33.7
Q ss_pred hHHHHHHHhhCCHHH-----HHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchH
Q 006165 336 SKIGMLCVKHGSAKE-----RKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTK 386 (658)
Q Consensus 336 S~Vv~~~L~~~~~K~-----Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~ 386 (658)
.++++.+|..++..- -..|+..|..-+..=+.|.||.+++.+++...+...
T Consensus 701 vrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~ 756 (960)
T KOG1992|consen 701 VRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNE 756 (960)
T ss_pred HHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhh
Confidence 367777777664321 223444444445555679999999999999987653
No 29
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.94 E-value=9.6e+02 Score=28.12 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 006165 231 GNATQKQELLVELYST 246 (658)
Q Consensus 231 a~~~qr~~li~e~~g~ 246 (658)
.+.+||..+++++-+.
T Consensus 601 L~s~qR~kla~nl~~~ 616 (776)
T KOG2235|consen 601 LKSKQREKLAENLPEM 616 (776)
T ss_pred ccHHHHHHHHHhhhHH
Confidence 5778888888776544
No 30
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=27.76 E-value=8.7e+02 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=13.4
Q ss_pred CCCHHHHHhhhhccccc
Q 006165 424 YLSPDDLSSLNLSIPSL 440 (658)
Q Consensus 424 ~f~p~~~~~L~~~~~~l 440 (658)
-..|.++++|.+|+|..
T Consensus 279 q~Lpsi~elLk~yMpa~ 295 (460)
T KOG2213|consen 279 QMLPSIVELLKEYMPAP 295 (460)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 44588999999999864
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=25.92 E-value=5.7e+02 Score=25.17 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHhhh
Q 006165 150 RVLQTCVK 157 (658)
Q Consensus 150 RvlQ~lLk 157 (658)
.++..+++
T Consensus 94 ~~l~~Ll~ 101 (228)
T PF12348_consen 94 ILLPPLLK 101 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=25.79 E-value=9.7e+02 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=17.5
Q ss_pred HHHhhcCcchhHHHHHHHhhC----CHHHHHHHHHHHHH
Q 006165 326 LVRMIHTRDGSKIGMLCVKHG----SAKERKKIIKGMKG 360 (658)
Q Consensus 326 l~~L~~tk~GS~Vv~~~L~~~----~~K~Rk~Iik~lk~ 360 (658)
+..++.......++..++.+. ++..+..+++.+..
T Consensus 328 L~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 328 LYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 444555555555666655554 34456666666544
No 33
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=25.73 E-value=1e+03 Score=29.75 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHH
Q 006165 120 AKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLS 177 (658)
Q Consensus 120 ~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~ 177 (658)
++..|.+++..++.-..- .+-.-++-+|+|-++-++. ++.-..++..|.+.|..
T Consensus 456 tKa~RkrLvKal~~vprt---~ldllPyYsRlVAtl~~~M-~dvat~lv~~L~~eFr~ 509 (1128)
T KOG2051|consen 456 TKANRKRLVKALFVVPRT---RLDLLPYYSRLVATLSKCM-PDVATELVTMLRKEFRS 509 (1128)
T ss_pred cHHHHHHHHHhhhcccch---hhhhhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 456677777766543322 2334477788888877764 33444444444444433
No 34
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=24.86 E-value=4.4e+02 Score=29.36 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=31.7
Q ss_pred ccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcc-------cchhHHHHHHHhc
Q 006165 148 SSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN-------TYAVHLVKKMLDN 194 (658)
Q Consensus 148 gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d-------~yg~~vVqKLl~~ 194 (658)
++||+-.+..+|+...-...++-..+.+..++.+ .++-.++|.++..
T Consensus 134 ~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 134 SFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 5677777888877766666666677777777777 5555556666543
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=23.65 E-value=1.1e+03 Score=26.78 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHH------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcC
Q 006165 335 GSKIGMLCVKHGSAKERKKIIKGMKG------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKN 408 (658)
Q Consensus 335 GS~Vv~~~L~~~~~K~Rk~Iik~lk~------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~ 408 (658)
.-..++.+|.|.++.-|...++.+.. ....++.+ +-++..++.+..++. ..+.......+..|+.++.
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~---~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD---NELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC---ccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCch
Confidence 34566777788888888777666432 11222222 223444455544442 1223333444555665555
Q ss_pred cHHH
Q 006165 409 GRRV 412 (658)
Q Consensus 409 Gr~V 412 (658)
|-..
T Consensus 152 ~~~~ 155 (503)
T PF10508_consen 152 GLEQ 155 (503)
T ss_pred hHHH
Confidence 5443
No 36
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.65 E-value=8.1e+02 Score=31.14 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred HHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhc---------CCHHHHHHHHHHHHHh
Q 006165 140 PEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDN---------ASKKQLAGFISALHGH 210 (658)
Q Consensus 140 ~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~---------~s~eqr~~Ii~~~~g~ 210 (658)
+....+-.+=++||.|=.|-+.|. .++.+.|.++.|..|+++--=++.|... -++..-..+.+.+.++
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~---~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEV---KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHH---HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 333444455678888888877754 5688899999999999996555554432 1333334455778999
Q ss_pred HHHHhhccccchHHHHHHh
Q 006165 211 VASLLRHMVGSVVVEHAYQ 229 (658)
Q Consensus 211 v~~L~~h~~Gs~Vvq~l~~ 229 (658)
+..|..+.-+. .|+-+|.
T Consensus 512 L~~l~~d~~~~-~vRiayA 529 (1431)
T KOG1240|consen 512 LNHLLNDSSAQ-IVRIAYA 529 (1431)
T ss_pred hHhhhccCccc-eehhhHH
Confidence 99999997444 4555553
No 37
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=23.33 E-value=1.4e+03 Score=27.81 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred HHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHH------HHHHHHHHHHhHHHHhhccccchHHH
Q 006165 152 LQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQ------LAGFISALHGHVASLLRHMVGSVVVE 225 (658)
Q Consensus 152 lQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eq------r~~Ii~~~~g~v~~L~~h~~Gs~Vvq 225 (658)
.|.++. .+.+.|.+....|...+-+|-.+- .+-.|-++.-+.++ ...++..+--.+..++.+-.+++-.-
T Consensus 533 ~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~---~LfeKgl~lF~dd~~t~~~L~khLLkT~~~~i~n~l~~~~a~~~~l 608 (803)
T PLN03083 533 RKALFT-ENAERRRRLLDNLQKKIDESFLNM---QLYEKALDLFEDDQSTSVVLHRHLLRTTAAEIADTLLHTLDIHNKL 608 (803)
T ss_pred HHHHHh-cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCccccchHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 556666 678888888899988888875554 24444443333221 33445555555555555554433222
Q ss_pred HHH---------h--hCCHHHHHHHHHHHHHh
Q 006165 226 HAY---------Q--LGNATQKQELLVELYST 246 (658)
Q Consensus 226 ~l~---------~--~a~~~qr~~li~e~~g~ 246 (658)
..= + ..+++||..++..|-+.
T Consensus 609 ~~~~~~~~~~~~~~~~l~~~~R~~~~~~lp~~ 640 (803)
T PLN03083 609 KNGTEVEDSKTQDTVLLSSAERTALAKNLPGS 640 (803)
T ss_pred hcccccccccCCCcccCCHHHHHHHHHhCcHH
Confidence 211 1 25678999998877543
No 38
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.18 E-value=1.4e+03 Score=27.31 Aligned_cols=107 Identities=10% Similarity=0.101 Sum_probs=66.3
Q ss_pred HHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchh----HHHHHHHhhC---CHHHHHHHHHHHHH----HHHhhhcC
Q 006165 300 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGS----KIGMLCVKHG---SAKERKKIIKGMKG----HIGKVAHD 368 (658)
Q Consensus 300 ~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS----~Vv~~~L~~~---~~K~Rk~Iik~lk~----~l~~La~d 368 (658)
.-+++||.+..|+-|+.-+..+.. ++ +..++.=- .-++.|+..+ ++.-||.+..+|.- +..+| -
T Consensus 177 pkfl~f~~h~spkiRs~A~~cvNq-~i--~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl--~ 251 (885)
T KOG2023|consen 177 PKFLQFFKHPSPKIRSHAVGCVNQ-FI--IIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL--V 251 (885)
T ss_pred HHHHHHHhCCChhHHHHHHhhhhh-ee--ecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc--c
Confidence 346788999999988887766531 11 11111100 1344555544 57779998888642 23333 3
Q ss_pred CchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHH
Q 006165 369 QCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLL 414 (658)
Q Consensus 369 ~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll 414 (658)
||=.-+++.+|..+.|.. +.+.-|-.+.+..++..+--+.++.
T Consensus 252 phl~~IveyML~~tqd~d---E~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVD---ENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred cchHHHHHHHHHHccCcc---hhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 556678899998887764 4466666677777777776666665
No 39
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=1.1e+03 Score=25.44 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=66.1
Q ss_pred hHHHHHHHhhcC-chHHHHHHHHHHHHHH-----HHHhhhCcCcHHHHHHHcCC-CCCCCCCHHHHHhhhhccccccccc
Q 006165 372 SMVLLCIVSIVD-DTKLIAKIIIRELQSI-----IKELVMDKNGRRVLLQLLHP-NCSRYLSPDDLSSLNLSIPSLCAKE 444 (658)
Q Consensus 372 ~~Vlq~lL~~~d-dt~l~~k~I~~eL~~~-----l~~L~~~~~Gr~Vll~LL~~-~~~r~f~p~~~~~L~~~~~~l~~~~ 444 (658)
++++++++-.+. |.++-+.-++..|+.- ..+...+ -+..+|-|||.| -++..|+.+.++-|..-..-|.
T Consensus 174 ~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp--- 249 (353)
T KOG2973|consen 174 RFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSEEDMAKLPVELQYLP--- 249 (353)
T ss_pred hhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCC---
Confidence 445555555443 3333233344444431 2222222 577888899999 4567888887776663110000
Q ss_pred CcccchhhcccchhhhhhHHHHHhhhccCCCCCCCCCCCcCCCCCChHHHHHHHHhhcCCcHHHHHHHHhcH-HHHHhcc
Q 006165 445 GSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENA-GELLRSN 523 (658)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sKKd~~~Rr~EL~~~~~~~~~L~~~~~~~~-~~ll~~~ 523 (658)
+ ....--||++|.. |+ +.|+..|+..+ .+.+|+.
T Consensus 250 ----------------------------------~----dKeRepdpdIrk~-ll------Eai~lLcaT~~GRe~lR~k 284 (353)
T KOG2973|consen 250 ----------------------------------E----DKEREPDPDIRKM-LL------EALLLLCATRAGREVLRSK 284 (353)
T ss_pred ----------------------------------c----cccCCCChHHHHH-HH------HHHHHHHhhhHhHHHHHhc
Confidence 0 0122235788854 44 46888888664 5899999
Q ss_pred CcchHHHHHHhcC
Q 006165 524 FGKEVLYEVAKGG 536 (658)
Q Consensus 524 ~g~~vl~e~l~~~ 536 (658)
.+=.+++|.-.+-
T Consensus 285 gvYpilRElhk~e 297 (353)
T KOG2973|consen 285 GVYPILRELHKWE 297 (353)
T ss_pred CchHHHHHHhcCC
Confidence 9888888776654
Done!