Query 006165
Match_columns 658
No_of_seqs 307 out of 1521
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 8.5E-44 2.9E-48 382.2 24.6 293 109-419 6-306 (351)
2 3k49_A MRNA-binding protein PU 100.0 1.3E-43 4.5E-48 383.2 19.5 264 109-419 6-274 (369)
3 3bwt_A Protein PUF4; pumilio, 100.0 4.2E-42 1.4E-46 366.3 25.2 250 127-419 3-255 (333)
4 3gvo_A Pumilio 2, pumilio homo 100.0 2.5E-38 8.5E-43 339.7 26.0 285 119-417 48-340 (351)
5 3k62_A FEM-3 mRNA-binding fact 100.0 6.5E-39 2.2E-43 349.8 20.8 301 109-418 6-401 (412)
6 3v71_A PUF (pumilio/FBF) domai 100.0 3.5E-37 1.2E-41 333.7 22.7 274 136-419 19-326 (382)
7 3k49_A MRNA-binding protein PU 100.0 3.5E-36 1.2E-40 325.1 19.6 283 118-414 52-355 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 3.4E-35 1.2E-39 313.0 25.9 287 119-416 35-331 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 1E-33 3.5E-38 306.6 24.6 286 123-417 47-379 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 4E-28 1.4E-32 264.7 24.6 327 166-622 21-400 (412)
11 3hjl_A Flagellar motor switch 70.5 1E+02 0.0035 31.7 21.2 53 332-386 196-262 (329)
12 2xes_A Protein PAT1 homolog 1; 36.6 2.2E+02 0.0075 28.0 10.8 113 107-229 51-175 (248)
13 2ion_A PDCD4, programmed cell 31.1 1.4E+02 0.0048 26.9 7.8 57 299-359 13-69 (152)
14 2nsz_A Programmed cell death p 27.7 92 0.0032 27.2 5.7 57 299-359 11-67 (129)
15 2yvy_A MGTE, Mg2+ transporter 25.8 1.9E+02 0.0065 28.2 8.5 20 154-173 14-33 (278)
16 2fv2_A RCD1 required for cell 23.1 4.2E+02 0.014 26.2 9.9 78 151-229 125-217 (268)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=8.5e-44 Score=382.18 Aligned_cols=293 Identities=18% Similarity=0.291 Sum_probs=264.0
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 006165 109 SLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLV 188 (658)
Q Consensus 109 ~iwE~lr~k~~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vV 188 (658)
+|||.+|.+..++- .++++.|++.++|.||+|||+||++|+++++++|+.||+++.+++.+||+|+||||||
T Consensus 6 ~l~e~~r~~~~~~~--------~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vv 77 (351)
T 3gvo_A 6 RLLEDFRNNRFPNL--------QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVI 77 (351)
T ss_dssp HHHHHHHTTCCTTC--------CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHH
T ss_pred HHHHHHhCCCCCCc--------CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHH
Confidence 58999998864331 2567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHh-
Q 006165 189 KKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS- 267 (658)
Q Consensus 189 qKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~- 267 (658)
||+|++|+++++..|++.+.|++..|+.|+|||+|||++++.++.+++..|+.|++++.+.++.|.+| ...++.+++
T Consensus 78 Qklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~G--n~ViQk~l~~ 155 (351)
T 3gvo_A 78 QKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNG--NHVVQKCIEC 155 (351)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTH--HHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhh--hHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 678888888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCC
Q 006165 268 KLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGS 347 (658)
Q Consensus 268 ~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~ 347 (658)
..|+++..|++.+...+..+.. +..-++++..++..++++.+..+++.+.+. +..|+++++|++|+++||++++
T Consensus 156 ~~~~~~~~i~~~~~~~~~~ls~-----~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~-~~~L~~d~~Gn~ViQ~~l~~~~ 229 (351)
T 3gvo_A 156 VQPQSLQFIIDAFKGQVFVLST-----HPYGCRVIQRILEHCTAEQTLPILEELHQH-TEQLVQDQYGNYVIQHVLEHGR 229 (351)
T ss_dssp SCGGGTHHHHHHTTTTHHHHHT-----STTHHHHHHHHHHHSCHHHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-----CcHhHHHHHHHHHHCCHHHHHHHHHHHhhh-HHhcCCCchHHHHHHHHHHhCc
Confidence 4577778888777665554332 223345667777788999999999999876 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHH-------HHHHhhhCcCcHHHHHHHcCC
Q 006165 348 AKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQS-------IIKELVMDKNGRRVLLQLLHP 419 (658)
Q Consensus 348 ~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~-------~l~~L~~~~~Gr~Vll~LL~~ 419 (658)
+++|+.|++.|++++..|++|+||++||+++|+++++.. ++.|+.||.. .+..|+.|+||++|++++|..
T Consensus 230 ~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~--r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~ 306 (351)
T 3gvo_A 230 PEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAE--RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 306 (351)
T ss_dssp HHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHH--HHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHH--HHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHh
Confidence 999999999999999999999999999999999998776 7899999985 799999999999999988864
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=1.3e-43 Score=383.24 Aligned_cols=264 Identities=20% Similarity=0.310 Sum_probs=237.6
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHH
Q 006165 109 SLWEKMRQRNIA-KETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHL 187 (658)
Q Consensus 109 ~iwE~lr~k~~~-~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~v 187 (658)
+|||.+|....+ ..+|.. .++++.|++.++|.+|+|||+||++|+++++++|+.||+++.|++.+|++|+|||||
T Consensus 6 ~lle~~~~~~~~~~~~~~~----~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~v 81 (369)
T 3k49_A 6 PLLEQLRNSSSDKNSNSNM----SLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYV 81 (369)
T ss_dssp HHHHHHHTTCC------CC----CGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHH
T ss_pred hhHHHHhCCCCccccccce----eHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccH
Confidence 599999987653 223333 346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHh
Q 006165 188 VKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS 267 (658)
Q Consensus 188 VqKLl~~~s~eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~ 267 (658)
|||+|++++++++..|+++|.|++..|+.|+|||+|||++|++++++|+..|+.|++++.+.+++|.+
T Consensus 82 vQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~------------ 149 (369)
T 3k49_A 82 IQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQN------------ 149 (369)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT------------
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCC
Q 006165 268 KLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGS 347 (658)
Q Consensus 268 ~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~ 347 (658)
+++++|++++.+ +++.+..+++.+.+. +..|++|++||+|+++||++++
T Consensus 150 ------------Gn~ViQ~~l~~~------------------~~~~~~~i~~~~~~~-~~~ls~~~~Gs~Vvq~~l~~~~ 198 (369)
T 3k49_A 150 ------------GNHVIQKAIETI------------------PIEKLPFILSSLTGH-IYHLSTHSYGCRVIQRLLEFGS 198 (369)
T ss_dssp ------------HHHHHHHHHHHS------------------CGGGCHHHHHHHTTT-HHHHHTSTTHHHHHHHHHHHSC
T ss_pred ------------cchHHHHHHHhC------------------CHHHHHHHHHHHHHH-HHHHhCCCccCcHHHHHHHhCC
Confidence 567777777643 334456778888877 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhcCchHH----HHHHHHHHHHHHHHHhhhCcCcHHHHHHHcCC
Q 006165 348 AKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKL----IAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419 (658)
Q Consensus 348 ~K~Rk~Iik~lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l----~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~ 419 (658)
+++|+.|++.|.+++..|+.|+|||||||++|++.+++.. .++.|++.+.+++.+|+.++||++|+.++|..
T Consensus 199 ~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~ 274 (369)
T 3k49_A 199 SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILY 274 (369)
T ss_dssp HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHh
Confidence 9999999999999999999999999999999999998752 36789999999999999999999999999985
No 3
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=4.2e-42 Score=366.32 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=227.8
Q ss_pred HHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHH
Q 006165 127 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISA 206 (658)
Q Consensus 127 lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~ 206 (658)
+.+.++++++|++.++|.+|+|||+||++|+++++++++.||+|+.|++.+||+|+||||||||+|++++++++..|++.
T Consensus 3 ~~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 82 (333)
T 3bwt_A 3 FADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82 (333)
T ss_dssp TTTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhccccchHHHHHHhhC-CHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHH
Q 006165 207 LHGHVASLLRHMVGSVVVEHAYQLG-NATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQ 285 (658)
Q Consensus 207 ~~g~v~~L~~h~~Gs~Vvq~l~~~a-~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq 285 (658)
+.|++..|+.|+|||||||++++.+ +++++..++.++++..+.+++|.+ +++++|
T Consensus 83 ~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~------------------------gn~Viq 138 (333)
T 3bwt_A 83 SSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLN------------------------GNHVIQ 138 (333)
T ss_dssp HGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTT------------------------HHHHHH
T ss_pred HHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCc------------------------ccHHHH
Confidence 9999999999999999999999975 677888899999999999999854 567777
Q ss_pred HHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHhh
Q 006165 286 PILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKV 365 (658)
Q Consensus 286 ~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~l~~L 365 (658)
++++. .+++.+..+++.+.+. +..|++|++||+|+++|+.++++++|+.|++.+.+++..|
T Consensus 139 k~l~~------------------~~~~~~~~i~~~l~~~-~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L 199 (333)
T 3bwt_A 139 KCLQR------------------LKPENFQFIFDAISDS-CIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKL 199 (333)
T ss_dssp HHHHH------------------SCHHHHHHHHHHHHHS-HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHH------------------CCHHHHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 76653 3456677888888877 7999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhhcCchH--HHHHHHHHHHHHHHHHhhhCcCcHHHHHHHcCC
Q 006165 366 AHDQCGSMVLLCIVSIVDDTK--LIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 419 (658)
Q Consensus 366 a~d~~G~~Vlq~lL~~~ddt~--l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~ 419 (658)
+.|+|||||||++|++.+++. ..++.|+..|.+++.+|+.++||++|+.++|..
T Consensus 200 ~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~ 255 (333)
T 3bwt_A 200 TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKT 255 (333)
T ss_dssp HTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTS
T ss_pred hcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc
Confidence 999999999999999886643 235789999999999999999999999999863
No 4
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.5e-38 Score=339.68 Aligned_cols=285 Identities=17% Similarity=0.268 Sum_probs=255.2
Q ss_pred CCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCHH
Q 006165 119 IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK 198 (658)
Q Consensus 119 ~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~e 198 (658)
.++++|.. +|+++.+++.+++.|++|+++||+++++|++++|..|++++.|++++|+.|+||++|||++|++++.+
T Consensus 48 ~~~~~~~~----i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 48 ATPAERQI----VFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSD 123 (351)
T ss_dssp CCHHHHHH----HHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred CCHHHHHH----HHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH
Confidence 45666655 45677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHh-hhhhhHHHHH
Q 006165 199 QLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS-KLGLQKASVL 277 (658)
Q Consensus 199 qr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~-~~~~kr~~il 277 (658)
++..|+++|.|++..|+.|+||+||+|++++.++++++..|+..+.|+...+..+..| ++.++.+++ ..++++..|+
T Consensus 124 ~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G--~~Vvq~~le~~~~~~~~~ii 201 (351)
T 3gvo_A 124 QQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG--CRVIQRILEHCTAEQTLPIL 201 (351)
T ss_dssp HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTH--HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHh--HHHHHHHHHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 899999999 4567777787
Q ss_pred HhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHH
Q 006165 278 RHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKG 357 (658)
Q Consensus 278 ~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~ 357 (658)
..+...+..++. ...++.+++ ..+..++|+.+..+++.+.+. +..|+++++||+|+++|++++++++|+.|+..
T Consensus 202 ~~l~~~~~~L~~-d~~Gn~ViQ----~~l~~~~~~~~~~i~~~l~~~-~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~e 275 (351)
T 3gvo_A 202 EELHQHTEQLVQ-DQYGNYVIQ----HVLEHGRPEDKSKIVSEIRGK-VLALSQHKFASNVVEKCVTHASRAERALLIDE 275 (351)
T ss_dssp HHHHTTHHHHHT-STTHHHHHH----HHHHHSCHHHHHHHHHTTTTC-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHhhhHHhcCC-CchHHHHHH----HHHHhCchhhHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777666655543 234444333 344568899999999999987 79999999999999999999999999999999
Q ss_pred HHH-------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhhCcCcHHHHHHHc
Q 006165 358 MKG-------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLL 417 (658)
Q Consensus 358 lk~-------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~~~~Gr~Vll~LL 417 (658)
+.+ .+..|+.|+|||||||++|+.++++. ++.|+..|.+++..|..++||++|+..+.
T Consensus 276 l~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~--r~~i~~~i~~~~~~L~~~~~g~~i~~kl~ 340 (351)
T 3gvo_A 276 VCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ--RKIIMHKIRPHITTLRKYTYGKHILAKLE 340 (351)
T ss_dssp HHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHH--HHHHHHHHGGGHHHHTTSTTTHHHHHHHH
T ss_pred HhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 885 79999999999999999999998887 89999999999999999999999997543
No 5
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=6.5e-39 Score=349.84 Aligned_cols=301 Identities=15% Similarity=0.200 Sum_probs=247.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH-hchHHHhhccCCccHHHHHhhhhC-CHHHHHHHHHHHHHH---HHHhhcccc
Q 006165 109 SLWEKMRQRNIAKETRSKLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYC-SQAERDAVFEELQPH---FLSLADNTY 183 (658)
Q Consensus 109 ~iwE~lr~k~~~~eeR~~lv~~l~~~i-kg~i~~la~~~~gSRvlQ~lLk~g-s~eqr~~I~~eL~~~---~~~L~~d~y 183 (658)
++|..-++++.... -++.+.+ +|+++++|.||+|||+||++|+++ ++++|+.||+|+.++ +.+||+|+|
T Consensus 6 ~~w~~~~~~~~~~~------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~f 79 (412)
T 3k62_A 6 PTWSLDSNGEMRSR------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIF 79 (412)
T ss_dssp CGGGBCTTSSBCTT------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTT
T ss_pred ccchhcccCCCCCC------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcH
Confidence 46776677765543 3355555 899999999999999999999997 999999999999874 899999999
Q ss_pred hhHHHHHHHhcCCH-------HHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHH--HHhHHhhhccc
Q 006165 184 AVHLVKKMLDNASK-------KQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL--YSTELQLFKNL 254 (658)
Q Consensus 184 g~~vVqKLl~~~s~-------eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~--~g~~~~l~~d~ 254 (658)
|||||||||++|++ +++..|++.+.|++..|+.|+|||+|||++++.++++++..|+.++ .+....+++|.
T Consensus 80 GNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~ 159 (412)
T 3k62_A 80 GNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQ 159 (412)
T ss_dssp HHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCc
Confidence 99999999999999 9999999999999999999999999999999999999999999999 57889999999
Q ss_pred CCCchhHHHHHHhhh-hhhHHH---------------HHHhHHHHHHHHHhcCCCch------------------hHHHH
Q 006165 255 VSIKESRLVDVISKL-GLQKAS---------------VLRHMASVIQPILEKGIIDH------------------SIIHR 300 (658)
Q Consensus 255 ~g~~~~~L~~il~~~-~~kr~~---------------il~~~~~~iq~ileK~~~~~------------------~lvh~ 300 (658)
+| ..+++.+++.. ++.+.. ...|||.++|++++...... .++..
T Consensus 160 ~G--NhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~ 237 (412)
T 3k62_A 160 NA--NHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTS 237 (412)
T ss_dssp TT--HHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHH
T ss_pred cc--cHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHH
Confidence 99 66777777743 333222 24678999999999765321 01111
Q ss_pred H---------------HHHH-HhhCChhH-HHHHHHh-cchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHHH--
Q 006165 301 V---------------LMEY-LSMADKSS-AADIIQQ-LSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKG-- 360 (658)
Q Consensus 301 ~---------------l~ey-~~~~~~~~-~~elI~~-L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~-- 360 (658)
+ +.+| +..+.++. +..+++. +.++ ++.|+++++||+|+++||.++++.+|+.|+.++..
T Consensus 238 I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~-~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~ 316 (412)
T 3k62_A 238 VTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRN-LLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGY 316 (412)
T ss_dssp HHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTC-HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHH-HHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhc
Confidence 0 1122 23444543 6778874 7877 79999999999999999999999999999999874
Q ss_pred ---------HHHhhhcCCchhHHHHHHHhhcCchHH------------------HHHHHHHHHHHHHHHhhhCcCcHHHH
Q 006165 361 ---------HIGKVAHDQCGSMVLLCIVSIVDDTKL------------------IAKIIIRELQSIIKELVMDKNGRRVL 413 (658)
Q Consensus 361 ---------~l~~La~d~~G~~Vlq~lL~~~ddt~l------------------~~k~I~~eL~~~l~~L~~~~~Gr~Vl 413 (658)
.+..|+.|+|||||||++|++++|++. .++.++..+++++..|....||++|+
T Consensus 317 ~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~ 396 (412)
T 3k62_A 317 IPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMI 396 (412)
T ss_dssp CCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHH
T ss_pred cCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHH
Confidence 488999999999999999999988621 24678999999999999999999999
Q ss_pred HHHcC
Q 006165 414 LQLLH 418 (658)
Q Consensus 414 l~LL~ 418 (658)
.+|-.
T Consensus 397 ~~l~~ 401 (412)
T 3k62_A 397 ETLAN 401 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 6
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-37 Score=333.73 Aligned_cols=274 Identities=15% Similarity=0.196 Sum_probs=225.0
Q ss_pred hchHHHhhccCCccHHHHHhhhhCCHH-HHHHHHHHHH---HHHHHhhcccchhHHHHHHHhcCCHHHHHHHHHH-HHHh
Q 006165 136 KGKIPEIAGSHVSSRVLQTCVKYCSQA-ERDAVFEELQ---PHFLSLADNTYAVHLVKKMLDNASKKQLAGFISA-LHGH 210 (658)
Q Consensus 136 kg~i~~la~~~~gSRvlQ~lLk~gs~e-qr~~I~~eL~---~~~~~L~~d~yg~~vVqKLl~~~s~eqr~~Ii~~-~~g~ 210 (658)
+|+++++|.||+|||+||++|++++++ .|+.||++|. +++.+||.|+||||||||||++|+++++..|+.. +.|+
T Consensus 19 ~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~ 98 (382)
T 3v71_A 19 NGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGG 98 (382)
T ss_dssp TTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred CCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcch
Confidence 899999999999999999999999865 5899999985 8999999999999999999999999999899887 5899
Q ss_pred HHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHH-hHHhhhcccCCCchhHHHHHHhhh-hhhHHHHHHhHH--HHHHH
Q 006165 211 VASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS-TELQLFKNLVSIKESRLVDVISKL-GLQKASVLRHMA--SVIQP 286 (658)
Q Consensus 211 v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g-~~~~l~~d~~g~~~~~L~~il~~~-~~kr~~il~~~~--~~iq~ 286 (658)
+..|+.|.|||||||++++.++.+++..|+.++.+ ....+++|.+| ...++.+++.. ++.+..|++.+. ..+..
T Consensus 99 v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~G--nhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~ 176 (382)
T 3v71_A 99 LLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQIS--IHVIQRVVKQLPVDMWTFFVHFLSSGDSLMA 176 (382)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTT--HHHHHHHHTTSCTTTSHHHHHHHHSTTHHHH
T ss_pred HHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCccc--ccHHHHHHHHCCHHHHHHHHHHHhcccchHh
Confidence 99999999999999999999999999999999998 79999999998 67888888854 455555555443 12222
Q ss_pred HHhcCCCchhHHHHHHHHHHhhCChh-----------HHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCH--HHHHH
Q 006165 287 ILEKGIIDHSIIHRVLMEYLSMADKS-----------SAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSA--KERKK 353 (658)
Q Consensus 287 ileK~~~~~~lvh~~l~ey~~~~~~~-----------~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~--K~Rk~ 353 (658)
+. ....++ +++...+..++++ ....+++.+.++ +..|+++++|++|+++||+++++ +.|..
T Consensus 177 la-~h~~Gc----~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~-~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ 250 (382)
T 3v71_A 177 VC-QDKYGC----RLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRN-CYRLSSNEFANYVIQYVIKSSGIMEMYRDT 250 (382)
T ss_dssp HH-HSTTHH----HHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTT-HHHHHTSTTTHHHHHHHHTCCSTHHHHHHH
T ss_pred Hh-cCchhh----HHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHhhCccccHHHHHHHhcCCCcHHHHHH
Confidence 21 112222 2233333322221 123456666655 68999999999999999999874 56889
Q ss_pred HHHH-HHHHHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHH-----------HHHHhhhCcCcHHHHHHHcCC
Q 006165 354 IIKG-MKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQS-----------IIKELVMDKNGRRVLLQLLHP 419 (658)
Q Consensus 354 Iik~-lk~~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~-----------~l~~L~~~~~Gr~Vll~LL~~ 419 (658)
|+.. |.+++..|++|+||++||+++|.+.++.. ++.|+.||.. .+..|+.|+||++|++++|..
T Consensus 251 ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~--r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~ 326 (382)
T 3v71_A 251 IIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPAL--LHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISI 326 (382)
T ss_dssp HHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHH--HHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHH--HHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHH
Confidence 9975 99999999999999999999999988765 8899999974 799999999999999988874
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.5e-36 Score=325.06 Aligned_cols=283 Identities=14% Similarity=0.230 Sum_probs=238.6
Q ss_pred CCCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCCH
Q 006165 118 NIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASK 197 (658)
Q Consensus 118 ~~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~s~ 197 (658)
..++++|..+ ++++.|++.+++.|++|+++||+++++|++++|..|++++.|++..|+.|+||++|||++|+++++
T Consensus 52 ~~~~~~~~~I----~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~ 127 (369)
T 3k49_A 52 TSPASEKEVI----FNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDS 127 (369)
T ss_dssp TCCHHHHHHH----HHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCH
T ss_pred cCCHHHHHHH----HHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCH
Confidence 3566776555 457799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhh-hhhhHHHH
Q 006165 198 KQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK-LGLQKASV 276 (658)
Q Consensus 198 eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~-~~~kr~~i 276 (658)
+++..|+.+|.+++..|+.|+||+||||++++.++++++..|+..+.|....+..+..| ++.+..+++. .+..+..|
T Consensus 128 ~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G--s~Vvq~~l~~~~~~~~~~i 205 (369)
T 3k49_A 128 NQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYG--CRVIQRLLEFGSSEDQESI 205 (369)
T ss_dssp HHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTH--HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcc--CcHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 8999999984 45666666
Q ss_pred HHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChh------HHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHH
Q 006165 277 LRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKS------SAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKE 350 (658)
Q Consensus 277 l~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~------~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~ 350 (658)
+..+...+..++. ...++.+ +...+..+++. .+..+++.+.++ +..|+++++||+|+++||.++++++
T Consensus 206 ~~~l~~~~~~L~~-d~~GnyV----iQ~~l~~~~~~~~~~~~~~~~i~~~l~~~-~~~Ls~~k~gS~Vvek~l~~~~~~~ 279 (369)
T 3k49_A 206 LNELKDFIPYLIQ-DQYGNYV----IQYVLQQDQFTNKEMVDIKQEIIETVANN-VVEYSKHKFASNVVEKSILYGSKNQ 279 (369)
T ss_dssp HHTTTTCHHHHHH-STTHHHH----HHHHHTCCTTSCHHHHHHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHhc-CCcHHHH----HHHHHhcCCchhhhhHhHHHHHHHHHHHH-HHHHHhhhHhhHHHHHHHHhCCHHH
Confidence 6554443333222 1222222 22222333332 256788888877 7999999999999999999999999
Q ss_pred HHHHHHHHHH-------------HHHhhhcCCchhHHHHHHHhhcCchHHHHHHHHHHHHHHHHHhhh-CcCcHHHHH
Q 006165 351 RKKIIKGMKG-------------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVM-DKNGRRVLL 414 (658)
Q Consensus 351 Rk~Iik~lk~-------------~l~~La~d~~G~~Vlq~lL~~~ddt~l~~k~I~~eL~~~l~~L~~-~~~Gr~Vll 414 (658)
|+.|+..|.+ ++..|+.|+|||||||++|+++++.. ++.++.+|.+++..|.. +.||++++.
T Consensus 280 r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~--~~~l~~~i~p~l~~L~~~~~~G~~~~~ 355 (369)
T 3k49_A 280 KDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEG--KKLIVIAIRAYLDKLNKSNSLGNRHLA 355 (369)
T ss_dssp HHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHCC--CCCCCH
T ss_pred HHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHhccccCcchHHH
Confidence 9999999853 47899999999999999999999886 89999999999999986 599988774
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=3.4e-35 Score=312.98 Aligned_cols=287 Identities=11% Similarity=0.170 Sum_probs=239.6
Q ss_pred CCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcC-CH
Q 006165 119 IAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNA-SK 197 (658)
Q Consensus 119 ~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~vVqKLl~~~-s~ 197 (658)
.++++|.. +++++.|++.+++.|++|+++||++++++++++|..|++++.|++.+|+.|+||++|||++++++ ++
T Consensus 35 ~~~~~~~~----i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~ 110 (333)
T 3bwt_A 35 LGSKAADA----IFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTD 110 (333)
T ss_dssp SCHHHHHH----HHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSH
T ss_pred CCHHHHHH----HHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcH
Confidence 34566554 45678999999999999999999999999999999999999999999999999999999999997 56
Q ss_pred HHHHHHHHHHHHhHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHh-hhhhhHHHH
Q 006165 198 KQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS-KLGLQKASV 276 (658)
Q Consensus 198 eqr~~Ii~~~~g~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~-~~~~kr~~i 276 (658)
+++..|+++|.+++..|+.|+||+||+|++++.++++++..|+..+.|....+..+..| ++.+..+++ ..++++..+
T Consensus 111 ~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G--s~Vvq~~l~~~~~~~~~~l 188 (333)
T 3bwt_A 111 EEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHG--CCVLQRCLDHGTTEQCDNL 188 (333)
T ss_dssp HHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTH--HHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchh--HHHHHHHHHhCCHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999888 888999988 446677777
Q ss_pred HHhHHHHHHHHHhcCCCchhHHHHHHHHHHhh-CChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHH
Q 006165 277 LRHMASVIQPILEKGIIDHSIIHRVLMEYLSM-ADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKII 355 (658)
Q Consensus 277 l~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~-~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Ii 355 (658)
+..+...+..+. +...++.+++.++. .... ..+..+..+++.+.+. +..|+++++||+|+++||++++ .++.|+
T Consensus 189 ~~el~~~~~~L~-~d~~GnyVvQ~~L~-~~~~~~~~~~~~~ii~~l~~~-~~~Ls~~k~gs~Vvek~l~~~~--~~~~ii 263 (333)
T 3bwt_A 189 CDKLLALVDKLT-LDPFGNYVVQYIIT-KEAEKNKYDYTHKIVHLLKPR-AIELSIHKFGSNVIEKILKTAI--VSEPMI 263 (333)
T ss_dssp HHHHHTTHHHHH-TSTTHHHHHHHHHH-HHHHHTCCSHHHHHHHHHGGG-HHHHHTSTTHHHHHHHHHTSHH--HHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHH-hCCccccchhHHHHHHHHHHH-HHHHHcccHHHHHHHHHHcccc--hhHHHH
Confidence 766665555544 33445555554442 1111 1112356888989877 7999999999999999999754 467788
Q ss_pred HHHH-----HHHHhhhcCCchhHHHHHHHhhcCch-HHHHHHHHHHHHHHH-HHhhhCcCcHHHHHHH
Q 006165 356 KGMK-----GHIGKVAHDQCGSMVLLCIVSIVDDT-KLIAKIIIRELQSII-KELVMDKNGRRVLLQL 416 (658)
Q Consensus 356 k~lk-----~~l~~La~d~~G~~Vlq~lL~~~ddt-~l~~k~I~~eL~~~l-~~L~~~~~Gr~Vll~L 416 (658)
..+. +++..|+.|+|||||||++|++++|+ ..+++.++++|.+++ ..|..++||++|+.+|
T Consensus 264 ~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l 331 (333)
T 3bwt_A 264 LEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRIIGML 331 (333)
T ss_dssp HHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTS
T ss_pred HHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCCCCHHHHHHHh
Confidence 7754 58999999999999999999999987 467899999999998 8999999999998653
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-33 Score=306.62 Aligned_cols=286 Identities=12% Similarity=0.159 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHhcCCHHHHH
Q 006165 123 TRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEE-LQPHFLSLADNTYAVHLVKKMLDNASKKQLA 201 (658)
Q Consensus 123 eR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~e-L~~~~~~L~~d~yg~~vVqKLl~~~s~eqr~ 201 (658)
.|..+.+++. +..+++.+|+.|++|+++||+++++|++++|..++.+ +.|++..|+.|+||++||||+|++++.+++.
T Consensus 47 ~~~~if~~l~-e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~ 125 (382)
T 3v71_A 47 IRKAVFEKFT-ESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVF 125 (382)
T ss_dssp HHHHHHHHHH-SCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHH-hhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHH
Confidence 3555555443 2236789999999999999999999999999999988 5899999999999999999999999999999
Q ss_pred HHHHHHHH-hHHHHhhccccchHHHHHHhhCCHHHHHHHHHHHH--HhHHhhhcccCCCchhHHHHHHhhh-hhh-----
Q 006165 202 GFISALHG-HVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY--STELQLFKNLVSIKESRLVDVISKL-GLQ----- 272 (658)
Q Consensus 202 ~Ii~~~~g-~v~~L~~h~~Gs~Vvq~l~~~a~~~qr~~li~e~~--g~~~~l~~d~~g~~~~~L~~il~~~-~~k----- 272 (658)
.|+.+|.+ ++..|+.|.+|+||||+|++.++++++..|+.+++ ++.+.++.+..| +++++.+++.. +++
T Consensus 126 ~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~G--c~VlQ~~le~~~~~~k~~~~ 203 (382)
T 3v71_A 126 QLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYG--CRLVQQVIDRLAENPKLPCF 203 (382)
T ss_dssp HHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTH--HHHHHHHHHHHTCCSSSTTH
T ss_pred HHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchh--hHHHHHHHHhCCHhhhhhhh
Confidence 99999998 89999999999999999999999999999999998 588999999998 89999999843 322
Q ss_pred --HHHHHHhHHHHH----HHHHhcCCCchhHHHHHHHHHHhhCCh--hHHHHHHHh-cchhhHHHhhcCcchhHHHHHHH
Q 006165 273 --KASVLRHMASVI----QPILEKGIIDHSIIHRVLMEYLSMADK--SSAADIIQQ-LSGPLLVRMIHTRDGSKIGMLCV 343 (658)
Q Consensus 273 --r~~il~~~~~~i----q~ileK~~~~~~lvh~~l~ey~~~~~~--~~~~elI~~-L~~~~l~~L~~tk~GS~Vv~~~L 343 (658)
+..++..+...| ..+ -....++.+++. .+..+++ ..+..+|.. +.++ +..|++|++||+|+++||
T Consensus 204 ~~r~~~l~~l~~~I~~~~~~L-~~d~~GNyVIQ~----iL~~~~~~e~~r~~ii~~~l~~~-~~~Ls~~k~gS~Vvek~l 277 (382)
T 3v71_A 204 KFRIQLLHSLMTCIVRNCYRL-SSNEFANYVIQY----VIKSSGIMEMYRDTIIDKCLLRN-LLSMSQDKYASHVIEGAF 277 (382)
T ss_dssp HHHHHHHHHHHHHHHTTHHHH-HTSTTTHHHHHH----HHTCCSTHHHHHHHHHHHTTTTC-HHHHTTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH-hhCccccHHHHH----HHhcCCCcHHHHHHHHHHHHHHH-HHHHhcCchHhHHHHHHH
Confidence 111221111111 111 112223322222 1223332 347788874 8877 799999999999999999
Q ss_pred hhCCHHHHHHHHHHHHH-----------HHHhhhcCCchhHHHHHHHhhcCchH-----------------HHHHHHHHH
Q 006165 344 KHGSAKERKKIIKGMKG-----------HIGKVAHDQCGSMVLLCIVSIVDDTK-----------------LIAKIIIRE 395 (658)
Q Consensus 344 ~~~~~K~Rk~Iik~lk~-----------~l~~La~d~~G~~Vlq~lL~~~ddt~-----------------l~~k~I~~e 395 (658)
.++++++|+.|+++|.+ ++..|+.|+|||||||++|++++|+. ...+.|+..
T Consensus 278 ~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 357 (382)
T 3v71_A 278 LFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQR 357 (382)
T ss_dssp HHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHH
Confidence 99999999999999863 79999999999999999999998742 225789999
Q ss_pred HHHHHHHhhhCcCcHHHHHHHc
Q 006165 396 LQSIIKELVMDKNGRRVLLQLL 417 (658)
Q Consensus 396 L~~~l~~L~~~~~Gr~Vll~LL 417 (658)
+.+++..|...+||++|+..|.
T Consensus 358 i~~~~~~l~~~~~Gk~i~~~l~ 379 (382)
T 3v71_A 358 VLQHASRLERFSSGKKIIDSVM 379 (382)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCchHHHHHHHH
Confidence 9999999999999999997653
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=99.96 E-value=4e-28 Score=264.73 Aligned_cols=327 Identities=14% Similarity=0.193 Sum_probs=252.1
Q ss_pred HHHHHH-HHHHHHhhcccchhHHHHHHHhcC-CHHHHHHHHHHHHHh---HHHHhhccccchHHHHHHhhCCH-------
Q 006165 166 AVFEEL-QPHFLSLADNTYAVHLVKKMLDNA-SKKQLAGFISALHGH---VASLLRHMVGSVVVEHAYQLGNA------- 233 (658)
Q Consensus 166 ~I~~eL-~~~~~~L~~d~yg~~vVqKLl~~~-s~eqr~~Ii~~~~g~---v~~L~~h~~Gs~Vvq~l~~~a~~------- 233 (658)
.+.+-+ +|+++++|+|++|++++|++|+++ ++++++.|++++.++ +..|+.|+||++|||++++++++
T Consensus 21 ~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~ 100 (412)
T 3k62_A 21 SLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYT 100 (412)
T ss_dssp CHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHH
T ss_pred cHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccH
Confidence 344445 799999999999999999999997 899999999999875 89999999999999999999998
Q ss_pred HHHHHHHHHHHHhHHhhhcccCCCchhHHHHHHhhhhhhHHHHHHhHHHHHHHHHhcCCCchhHHHHHHHHHHhhCChhH
Q 006165 234 TQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSS 313 (658)
Q Consensus 234 ~qr~~li~e~~g~~~~l~~d~~g~~~~~L~~il~~~~~kr~~il~~~~~~iq~ileK~~~~~~lvh~~l~ey~~~~~~~~ 313 (658)
+++..|+..+.|+.+.+..+. +++.++|++++. ++++.
T Consensus 101 ~q~~~i~~~l~g~v~~L~~~~------------------------~GsrvvQk~le~------------------~~~~~ 138 (412)
T 3k62_A 101 KRQEKLKNFISSQMTDMCLDK------------------------FACRVIQSSLQN------------------MDLSL 138 (412)
T ss_dssp HHHHHHHHHHHHTHHHHHHST------------------------THHHHHHHHHHH------------------SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCh------------------------hhhHHHHHHHHh------------------CCHHH
Confidence 899999999999999988874 557777776653 33455
Q ss_pred HHHHHHhcc-hhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHH--HHHHhhhcCCchhHHHHHHHhhcCchH----
Q 006165 314 AADIIQQLS-GPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK--GHIGKVAHDQCGSMVLLCIVSIVDDTK---- 386 (658)
Q Consensus 314 ~~elI~~L~-~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk--~~l~~La~d~~G~~Vlq~lL~~~ddt~---- 386 (658)
+..++..+. .+.+..|+.+++|++|+++||++++++.+..|++.|. +++..|++|+||++|||++|++++++.
T Consensus 139 ~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~ 218 (412)
T 3k62_A 139 ACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVD 218 (412)
T ss_dssp HHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTT
T ss_pred HHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccch
Confidence 677888882 2347999999999999999999999999999999998 699999999999999999999987542
Q ss_pred ------HHH----HHHHHHHHHHHHHhhhCcCcHHHHHHHcCCCCCCCCCHHHHHhhhhcccccccccCcccchhhcccc
Q 006165 387 ------LIA----KIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNE 456 (658)
Q Consensus 387 ------l~~----k~I~~eL~~~l~~L~~~~~Gr~Vll~LL~~~~~r~f~p~~~~~L~~~~~~l~~~~~~~~~~~~~~~~ 456 (658)
..+ +.++.+|.++...|+.|+||.+|++++|....
T Consensus 219 ~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~----------------------------------- 263 (412)
T 3k62_A 219 LTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDD----------------------------------- 263 (412)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGG-----------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCC-----------------------------------
Confidence 112 34677888889999999999999998887410
Q ss_pred hhhhhhHHHHHhhhccCCCCCCCCCCCcCCCCCChHHHHHHHHhhcCCcHHHHH-HHHhcHHHHHhccCcchHHHHHHhc
Q 006165 457 SSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRVRRQELLVSSGLAESMID-VCIENAGELLRSNFGKEVLYEVAKG 535 (658)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sKKd~~~Rr~EL~~~~~~~~~L~~-~~~~~~~~ll~~~~g~~vl~e~l~~ 535 (658)
|+.-|.. +++ .+..|..+|...+|||.||..++..
T Consensus 264 ----------------------------------~~~~r~~----------ii~~~l~~~~~~LS~~KfgSnVVek~L~~ 299 (412)
T 3k62_A 264 ----------------------------------LAVYREC----------IIEKCLMRNLLSLSQEKFASHVVEKAFLH 299 (412)
T ss_dssp ----------------------------------GHHHHHH----------HHHHHTTTCHHHHHTSTTHHHHHHHHHHH
T ss_pred ----------------------------------chhHHHH----------HHHHHHHHHHHHHhcccHhHHHHHHHHHh
Confidence 1111122 222 3457888999999999999988876
Q ss_pred CCCCCcCccchhhhhHHHHHHHHH-hhccCCCcchhhhhhhcchhHHHHHHHHhCCc------------------hh---
Q 006165 536 GSDDILRPTLDDKLNTLHETIASL-ASESKSEASEEEHVLENFHSSRTIRKLVMDCP------------------KF--- 593 (658)
Q Consensus 536 ~~~~~~~~~~~d~~~~~~~ai~~~-~~~~~~~~~~~~~~~~~~~~~r~lk~li~~~~------------------~F--- 593 (658)
+.. +....+++.|..- ...|......-.-++.|++|..++.+++.-+. .|
T Consensus 300 ~~~--------~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~ 371 (412)
T 3k62_A 300 APL--------ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDW 371 (412)
T ss_dssp CCH--------HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHH
T ss_pred CCH--------HHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHH
Confidence 432 2234455555421 11222111112357899999999999987440 12
Q ss_pred HHHHHHHhhhhhhhhhccc-cchhHhHHhh
Q 006165 594 ASTLWKNALKGKSEFWAQG-HSCKVVTAFL 622 (658)
Q Consensus 594 ~~~l~~~~~~~~~~~wa~~-~g~~vv~all 622 (658)
.+.|+.. +.++...+... +|.+||..|-
T Consensus 372 ~~~l~~~-i~~~~~~L~~~~~Gk~i~~~l~ 400 (412)
T 3k62_A 372 LKKLHSR-VTKERHRLSRFSSGKKMIETLA 400 (412)
T ss_dssp HHHHHHH-HHHTHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHhccCCCccHHHHHHH
Confidence 2467776 68888888766 5999998874
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=70.47 E-value=1e+02 Score=31.73 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=37.7
Q ss_pred CcchhHHHHHHHhhCCHHHHHHHHHHHHHH--------------HHhhhcCCchhHHHHHHHhhcCchH
Q 006165 332 TRDGSKIGMLCVKHGSAKERKKIIKGMKGH--------------IGKVAHDQCGSMVLLCIVSIVDDTK 386 (658)
Q Consensus 332 tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk~~--------------l~~La~d~~G~~Vlq~lL~~~ddt~ 386 (658)
...|...+-.+|.+.+....+.|+..|..+ |..|. .-...-+|++|..+|...
T Consensus 196 ~~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela~~Ir~~MF~Fedl~--~lddr~iq~llrev~~~~ 262 (329)
T 3hjl_A 196 KLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEERIREKMFTFEDIR--KLSDRDIIEILKVVDKNT 262 (329)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHHHHHHSCGGGGG--GSCHHHHHHHHTTSCHHH
T ss_pred ccccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHHHHHHHHhcCHHHHh--CCCHHHHHHHHHhCCHHH
Confidence 477889999999999999999999888753 22222 344556777777766443
No 12
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=36.61 E-value=2.2e+02 Score=27.96 Aligned_cols=113 Identities=11% Similarity=0.189 Sum_probs=68.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhchHHHhhccCCccHHHHHhhhhCCHHHHHHHHHHHHHHHHHhhcccchhH
Q 006165 107 LASLWEKMRQRNIAKETRSKLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 186 (658)
Q Consensus 107 ~k~iwE~lr~k~~~~eeR~~lv~~l~~~ikg~i~~la~~~~gSRvlQ~lLk~gs~eqr~~I~~eL~~~~~~L~~d~yg~~ 186 (658)
..+||+.|+..+.-.+. .-...+..+..-.-|-++|-+++.+-+.+|+-.|+..+--|+..|...--.-.
T Consensus 51 ~~~L~~sL~~~~p~~~~----------~~~~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~ 120 (248)
T 2xes_A 51 ICSMYDNLRGKLPGQER----------PSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDE 120 (248)
T ss_dssp HHHHHHHHHCCCTTCSS----------CCSHHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTC
T ss_pred HHHHHHHhcccCCCCCc----------CCCCceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 55777777765421000 00133556777778999999999999999999999999887777643221112
Q ss_pred -------HHHHHHhcCCHHHHHHHHHHH-----HHhHHHHhhccccchHHHHHHh
Q 006165 187 -------LVKKMLDNASKKQLAGFISAL-----HGHVASLLRHMVGSVVVEHAYQ 229 (658)
Q Consensus 187 -------vVqKLl~~~s~eqr~~Ii~~~-----~g~v~~L~~h~~Gs~Vvq~l~~ 229 (658)
.+.+++...+-...-.++..+ ..++..++++++|.-++-.++.
T Consensus 121 vL~~L~~~~~~~I~~~~l~~l~~~l~~Ll~~~~~~~l~~v~~~k~GlSlLt~LLs 175 (248)
T 2xes_A 121 VLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPGSPHLTAVLQNKFGLSLLLILLS 175 (248)
T ss_dssp CGGGGHHHHHHHHTTCCHHHHHHHHHHHTSSTTTTCCHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCccceeeeecCchHHHHHHHHH
Confidence 222333344444344444444 1256666677777777666664
No 13
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.14 E-value=1.4e+02 Score=26.93 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHH
Q 006165 299 HRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 359 (658)
Q Consensus 299 h~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk 359 (658)
..++.+||...+.++....++.|..+ -.|+..=..++...|...+..+|..+.+-|.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p----~f~~e~V~~~i~~alE~~~~~~re~~~~LL~ 69 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP----HFHHELVYEAIVMVLESTGESAFKMILDLLK 69 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG----GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC----cchHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34688999988877777777766432 2344445566666677655666766655444
No 14
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.68 E-value=92 Score=27.23 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHhcchhhHHHhhcCcchhHHHHHHHhhCCHHHHHHHHHHHH
Q 006165 299 HRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 359 (658)
Q Consensus 299 h~~l~ey~~~~~~~~~~elI~~L~~~~l~~L~~tk~GS~Vv~~~L~~~~~K~Rk~Iik~lk 359 (658)
..++.+|+...+.++....++.|..+ -.|+..=..++...+...++.+|..+.+-|.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p----~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~ 67 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP----HFHHELVYEAIVMVLESTGESAFKMILDLLK 67 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG----GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC----ccHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34688999988887777777766432 2344445556666666665566666655444
No 15
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=25.81 E-value=1.9e+02 Score=28.25 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.0
Q ss_pred HhhhhCCHHHHHHHHHHHHH
Q 006165 154 TCVKYCSQAERDAVFEELQP 173 (658)
Q Consensus 154 ~lLk~gs~eqr~~I~~eL~~ 173 (658)
.++...++.....++.++.+
T Consensus 14 ~~l~~~~~~~~~~~l~~l~~ 33 (278)
T 2yvy_A 14 EALQEGDTRALREVLEEIHP 33 (278)
T ss_dssp HHHHHTCHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHhCCH
Confidence 34444455555555555543
No 16
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.10 E-value=4.2e+02 Score=26.25 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHhhhhCCHHHHHHHHH-HHHHHHHHhhcc------cchhHHHHHHHh--------cCCHHHHHHHHHHHHHhHHHHh
Q 006165 151 VLQTCVKYCSQAERDAVFE-ELQPHFLSLADN------TYAVHLVKKMLD--------NASKKQLAGFISALHGHVASLL 215 (658)
Q Consensus 151 vlQ~lLk~gs~eqr~~I~~-eL~~~~~~L~~d------~yg~~vVqKLl~--------~~s~eqr~~Ii~~~~g~v~~L~ 215 (658)
||=+++|..++|...-+++ |+-|-+...+.. .-|.|++||++. +.+.+....+...+..-+..|+
T Consensus 125 VIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~ 204 (268)
T 2fv2_A 125 VIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS 204 (268)
T ss_dssp HHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh
Confidence 4566778777776665554 355544444332 257899999984 2366655566666666666666
Q ss_pred hccccchHHHHHHh
Q 006165 216 RHMVGSVVVEHAYQ 229 (658)
Q Consensus 216 ~h~~Gs~Vvq~l~~ 229 (658)
.++ ..+++..++.
T Consensus 205 ~~p-s~RLLKhiir 217 (268)
T 2fv2_A 205 KEP-SARLLKHVVR 217 (268)
T ss_dssp TSC-CHHHHHHHHH
T ss_pred cCC-ChHHHHHHHH
Confidence 655 5567766554
Done!