Query 006167
Match_columns 658
No_of_seqs 278 out of 1371
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.6E-60 1.2E-64 511.6 31.8 325 26-359 8-364 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 4.6E-59 1.6E-63 496.7 30.1 319 26-355 9-344 (348)
3 3i3t_A Ubiquitin carboxyl-term 100.0 5.8E-59 2E-63 497.2 26.0 320 24-357 2-354 (355)
4 2gfo_A Ubiquitin carboxyl-term 100.0 3.2E-58 1.1E-62 502.3 29.7 320 26-354 62-396 (396)
5 1nb8_A Ubiquitin carboxyl-term 100.0 5.9E-57 2E-61 484.9 30.3 294 23-356 4-317 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 2.7E-57 9.1E-62 494.5 25.5 322 20-357 8-397 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 3.4E-55 1.2E-59 488.8 31.0 312 23-354 139-474 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 3E-55 1E-59 480.9 28.6 296 23-354 21-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 2.5E-54 8.5E-59 487.6 28.6 294 23-356 173-486 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 2.8E-51 9.6E-56 484.2 29.1 292 25-354 343-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.9 2.3E-27 7.7E-32 250.5 8.6 228 23-329 6-308 (374)
12 3mhs_B Protein SUS1; multi-pro 97.4 0.00043 1.5E-08 59.7 8.4 70 573-651 22-91 (96)
13 4dhx_B Enhancer of yellow 2 tr 97.3 0.00062 2.1E-08 59.2 7.9 71 573-651 26-97 (101)
14 3mp2_A Non-structural protein 97.2 0.0032 1.1E-07 61.6 12.2 181 27-336 14-195 (211)
15 2fe8_A PP1AB, ORF1AB, replicas 95.9 0.047 1.6E-06 56.6 11.5 37 298-337 260-296 (315)
16 1qmy_A Protease, leader protea 71.3 1.9 6.4E-05 39.2 2.3 51 298-358 110-160 (167)
17 2kvu_A MKL/myocardin-like prot 38.0 17 0.00057 29.5 2.3 23 636-658 47-69 (75)
18 1zso_A Hypothetical protein; s 34.1 1.6E+02 0.0054 27.3 8.7 87 229-339 71-158 (164)
19 1qmy_A Protease, leader protea 32.5 98 0.0034 28.1 6.6 31 26-56 13-44 (167)
20 3a43_A HYPD, hydrogenase nicke 30.8 72 0.0025 28.7 5.7 50 179-238 68-117 (139)
21 3c0t_B Mediator of RNA polymer 29.9 20 0.0007 23.3 1.2 17 591-607 11-27 (33)
22 3e1k_B Lactose regulatory prot 29.2 21 0.00072 21.5 1.1 8 590-597 10-17 (22)
23 2do5_A Splicing factor 3B subu 28.6 24 0.00084 26.1 1.6 14 636-649 29-42 (58)
24 3o65_A Putative ataxin-3-like 23.2 53 0.0018 31.4 3.4 51 297-353 110-168 (191)
25 3bts_E Regulatory protein GAL4 22.1 35 0.0012 21.4 1.2 9 590-598 8-16 (26)
26 1qyp_A RNA polymerase II; tran 22.0 45 0.0015 25.0 2.2 12 179-190 13-24 (57)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-60 Score=511.65 Aligned_cols=325 Identities=29% Similarity=0.467 Sum_probs=269.2
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006167 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
++||.|+||||||||+||+|+++|+||++++........ ... ++.....++.+++..++..++......+.|..
T Consensus 8 ~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~ 81 (367)
T 2y6e_A 8 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEI---NRD---NPLGMKGEIAEAYAELIKQMWSGRDAHVAPRM 81 (367)
T ss_dssp CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGC---CSS---CTTSCTTHHHHHHHHHHHHHTSSSCSEECCHH
T ss_pred CcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhc---ccc---CCCCcchHHHHHHHHHHHHHHcCCCCCcCHHH
Confidence 499999999999999999999999999999976543221 001 11122345778888999999988878999999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCC---------CcccCCCCccccccce
Q 006167 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGG---------ETINGGSSVVKEIFGG 176 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~---------~~~~~~~siI~~lF~G 176 (658)
|+.++....+.|..++||||+|||.+||+.|++++....+....... ...+..+ .......++|.++|+|
T Consensus 82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~-~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G 160 (367)
T 2y6e_A 82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELK-DANGRPDAVVAKEAWENHRLRNDSVIVDTFHG 160 (367)
T ss_dssp HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCC-CCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccc-cccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence 99999999999999999999999999999999987654332111000 0000000 0011246789999999
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeeccc-------------------chhHHHHHHhccccccccCCCccccccCCCc
Q 006167 177 ALQSQVKCLACGAESNKVDEIMDISLDILN-------------------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKL 237 (658)
Q Consensus 177 ~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~-------------------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~ 237 (658)
++.++++|..|++.+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|++.
T Consensus 161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~ 240 (367)
T 2y6e_A 161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH 240 (367)
T ss_dssp EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence 999999999999999999999999999975 3589999999999999999999999999999
Q ss_pred ceeEEEEEEecCCceeEEEEeeeeecc--CCccceeEeccc-eeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEE
Q 006167 238 VSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYY 314 (658)
Q Consensus 238 ~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYv 314 (658)
+.+.|+..|.++|+||+|||+||.++. ..|+++.|.||. .|||.+|+.... .....|+|+|||+|.| +.++|||+
T Consensus 241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~ 318 (367)
T 2y6e_A 241 QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-ARPYVYDLIAVSNHYG-AMGVGHYT 318 (367)
T ss_dssp ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-SCCCEEEEEEEEEEEC-SSSSCEEE
T ss_pred ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-CCCceEEEEEEeecCC-CCCCCeee
Confidence 999999999999999999999999843 369999999996 799999987543 3467999999999999 58999999
Q ss_pred EEEEcC-CCceEEEeCceeeeechhhhcCCCeEEEEEEEcCCCCCC
Q 006167 315 AYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS 359 (658)
Q Consensus 315 ayvr~~-~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~~~~~~ 359 (658)
||+|+. +++||+|||+.|+++++++|++..||||||+|.+..+..
T Consensus 319 a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 319 AYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp EEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred EEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCC
Confidence 999995 789999999999999999999999999999999876543
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=4.6e-59 Score=496.69 Aligned_cols=319 Identities=30% Similarity=0.492 Sum_probs=268.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHh-cCCCCccChH
Q 006167 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLDAPA 104 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~-~~~~~~i~p~ 104 (658)
++||.|+||||||||+||+|+++|+||++++........ .. ......++.+++..++..++ ......+.|.
T Consensus 9 ~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~-----~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~ 80 (348)
T 3nhe_A 9 LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL-----HH---GSNAHTALVEEFAKLIQTIWTSSPNDVVSPS 80 (348)
T ss_dssp CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTS-----CS---SCCTTHHHHHHHHHHHHHHTTCCTTCEECCH
T ss_pred CCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhh-----cc---CCCcccHHHHHHHHHHHHHHcCCCCCccCHH
Confidence 499999999999999999999999999999876443221 10 11234467888999999988 4555889999
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCC--------CCCcccCCCCccccccce
Q 006167 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG--------GGETINGGSSVVKEIFGG 176 (658)
Q Consensus 105 ~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~--------~~~~~~~~~siI~~lF~G 176 (658)
.|..++....+.|..++||||+|||.+||+.|++++.................. +........++|.++|+|
T Consensus 81 ~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g 160 (348)
T 3nhe_A 81 EFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVG 160 (348)
T ss_dssp HHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCE
T ss_pred HHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccce
Confidence 999999999999999999999999999999999987644321111100000000 000123456789999999
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeecccc----hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCce
Q 006167 177 ALQSQVKCLACGAESNKVDEIMDISLDILNS----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNI 252 (658)
Q Consensus 177 ~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~----~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~i 252 (658)
++.+.++|..|+..+.+.|+|++|+|+++.. .+|+++|+.|+.+|.++++++|.|++|+....+.|+..|.++|+|
T Consensus 161 ~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~v 240 (348)
T 3nhe_A 161 QLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKI 240 (348)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSE
T ss_pred EEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCce
Confidence 9999999999999999999999999999873 499999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeeecc--CCccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEe
Q 006167 253 LVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCN 328 (658)
Q Consensus 253 LiI~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fN 328 (658)
|+|||+||.+.. ..|+.+.|.|| +.|||.+|+.... ....|+|+|||+|.| +..+|||+||+|+ ..++||+||
T Consensus 241 L~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~n 317 (348)
T 3nhe_A 241 LVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFN 317 (348)
T ss_dssp EEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEE
T ss_pred EEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEe
Confidence 999999998743 47999999999 6899999987543 467899999999999 6899999999998 478999999
Q ss_pred CceeeeechhhhcCCCeEEEEEEEcCC
Q 006167 329 DSYVSVSTLQEVLSEKVYILFFIRANQ 355 (658)
Q Consensus 329 Ds~Vt~is~eev~s~~aYmLfY~R~~~ 355 (658)
|+.|+++++++|.+..||||||+|.+.
T Consensus 318 D~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 318 DSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp TTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred CCCceECCHHHcCCCCceEEEEEecCC
Confidence 999999999999999999999999864
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=5.8e-59 Score=497.22 Aligned_cols=320 Identities=30% Similarity=0.495 Sum_probs=260.1
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC-CccC
Q 006167 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL-TLDA 102 (658)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~-~~i~ 102 (658)
|. +||.|+||||||||+||+|+++|+||++++........ . ......++.+.+..++..++.... ..++
T Consensus 2 G~-~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~v~ 71 (355)
T 3i3t_A 2 GH-VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV-----P----GGGRAQELTEAFADVIGALWHPDSCEAVN 71 (355)
T ss_dssp -C-CCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------------CHHHHHHHHHHHHTSSCSSCCCBC
T ss_pred CC-cCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhc-----C----CCCchhHHHHHHHHHHHHHhcCCCCCccc
Confidence 54 99999999999999999999999999999875443221 0 112334678888888888887655 7899
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCC------CCCC----C------------
Q 006167 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSG------GGGG----G------------ 160 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~------~~~~----~------------ 160 (658)
|..|..++....+.|..++||||+|||.+||+.|++++....+..+....... .... .
T Consensus 72 p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
T 3i3t_A 72 PTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMW 151 (355)
T ss_dssp CHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998654331111000000 0000 0
Q ss_pred -CcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccc------hhHHHHHHhccccccccCCCcccccc
Q 006167 161 -ETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS------CSLKEAMQKFFQPEVLDGNNKYKCDN 233 (658)
Q Consensus 161 -~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~------~sLed~L~~~~~~E~l~g~nky~C~~ 233 (658)
.......++|.++|+|++.+.++|..|++.+.+.++|++|+|+++.. .+|+++|+.|+.+|.++++|+|.|++
T Consensus 152 ~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~ 231 (355)
T 3i3t_A 152 KRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDR 231 (355)
T ss_dssp HHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSS
T ss_pred HHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCC
Confidence 00122457899999999999999999999999999999999999863 49999999999999999999999999
Q ss_pred CCCcceeEEEEEEecCCceeEEEEeeeeecc--CCccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeecCCCCC
Q 006167 234 CKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDS 310 (658)
Q Consensus 234 C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~s 310 (658)
|+....+.|+..|.++|+||+|||+||.+.. ..|+...|.|| +.|||.+|+.... ....|+|+|||+|.| +.++
T Consensus 232 C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L~avv~H~G-~~~~ 308 (355)
T 3i3t_A 232 CRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQLYALCNHSG-SVHY 308 (355)
T ss_dssp SCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEEEEEEEEEE-ETTE
T ss_pred CCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEEEEEEEecC-CCCC
Confidence 9999999999999999999999999999843 35999999999 6799999986543 467899999999999 7999
Q ss_pred CcEEEEEEcCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcCCCC
Q 006167 311 GHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 357 (658)
Q Consensus 311 GHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~~~~ 357 (658)
|||+||+|. .+.||+|||+.|+++++++|.+..||||||+|.+..|
T Consensus 309 GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 309 GHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred CeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 999999999 5779999999999999999999999999999987643
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.2e-58 Score=502.31 Aligned_cols=320 Identities=27% Similarity=0.464 Sum_probs=264.7
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006167 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
++||.|+||||||||+||+|+++|+||++++........ .... ......++.+++..++..++......+.|..
T Consensus 62 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~---~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~ 135 (396)
T 2gfo_A 62 LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDI---NRSN---LLGHKGEVAEEFGIIMKALWTGQYRYISPKD 135 (396)
T ss_dssp CCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHC---CTTC---TTSCTTHHHHHHHHHHHHHHHSCEEEECCHH
T ss_pred cccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhh---cccC---CCCcccHHHHHHHHHHHHHHcCCCceECHHH
Confidence 499999999999999999999999999999875443221 0010 1112234666777788888887778899999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCC---------CcccCCCCccccccce
Q 006167 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGG---------ETINGGSSVVKEIFGG 176 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~---------~~~~~~~siI~~lF~G 176 (658)
|+.++....+.|..++||||+|||.+||+.|++++........... ...+...+ .......++|.++|+|
T Consensus 136 f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~-~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G 214 (396)
T 2gfo_A 136 FKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKE-ENNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 214 (396)
T ss_dssp HHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhcccccccc-ccccccchhhHHHHHHHHhhhccCCccchhhCc
Confidence 9999999999999999999999999999999998764322111000 00000000 0012246789999999
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeeccc--chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeE
Q 006167 177 ALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 177 ~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLi 254 (658)
++.+.++|..|+..+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+..+.+.|+..|.++|+||+
T Consensus 215 ~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLi 294 (396)
T 2gfo_A 215 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 294 (396)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEE
T ss_pred EEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEE
Confidence 999999999999999999999999999986 479999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeecc--CCccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEEeCc
Q 006167 255 IQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDS 330 (658)
Q Consensus 255 I~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~-~~~Wy~fNDs 330 (658)
|||+||.++. ..|+++.|.|| +.|||.+|+.... .....|+|+|||+|.| +.++|||+||+|+. +++||+|||+
T Consensus 295 ihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~ 372 (396)
T 2gfo_A 295 VHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK-NNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 372 (396)
T ss_dssp EEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCC-SSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETT
T ss_pred EEecceeccCccceecCceEecchhhccccccccCCC-CCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCC
Confidence 9999999853 36999999999 5799999987532 3457899999999999 89999999999984 6899999999
Q ss_pred eeeeechhhhcCCCeEEEEEEEcC
Q 006167 331 YVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 331 ~Vt~is~eev~s~~aYmLfY~R~~ 354 (658)
.|+++++++|.+..||||||+|.+
T Consensus 373 ~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 373 EVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEECCHHHHSCTTEEEEEEECC-
T ss_pred CeEECCHHHcCCCCceEEEEEEcC
Confidence 999999999999999999999864
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=5.9e-57 Score=484.94 Aligned_cols=294 Identities=28% Similarity=0.433 Sum_probs=253.8
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006167 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.| ++||.|+||||||||+||+|+++|+||++++...... . ....++.+++..+|..++.+. ..+.
T Consensus 4 ~g-~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~~ 68 (353)
T 1nb8_A 4 TG-YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPVG 68 (353)
T ss_dssp SS-CCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-------S------CTTTCHHHHHHHHHHHHHHCS-SCBC
T ss_pred CC-CCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-------C------cccccHHHHHHHHHHHHhhcC-CCCC
Confidence 45 4999999999999999999999999999997653211 0 123467788889888888765 5778
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 006167 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i 182 (658)
|..|...+. .+.|..++||||+|||.+||+.|++++... ...++|.++|+|++.+.+
T Consensus 69 ~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~---------------------~~~s~i~~~F~g~~~~~i 125 (353)
T 1nb8_A 69 TKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSYI 125 (353)
T ss_dssp CHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS---------------------TTTTHHHHHHCEEEEEEE
T ss_pred CHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC---------------------CccchhhhhceeEEEEEE
Confidence 888887765 367889999999999999999999875311 124689999999999999
Q ss_pred EeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee
Q 006167 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 183 ~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
+|..|+..+.+.|+|++|+|++++..+|+++|..|+.+|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.+
T Consensus 126 ~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~ 204 (353)
T 1nb8_A 126 QCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMY 204 (353)
T ss_dssp EESSSCCEEEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC-
T ss_pred EeccCCCeeceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEE
Confidence 99999999999999999999999999999999999999999999999999996 56789999999999999999999988
Q ss_pred cc----CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeech
Q 006167 263 IF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTL 337 (658)
Q Consensus 263 ~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~ 337 (658)
+. ..|+++.|.||..|||.+|+..........|+|+|||+|.|. .++|||+||+|+ .+++||+|||+.|+++++
T Consensus 205 ~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~ 283 (353)
T 1nb8_A 205 DPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTK 283 (353)
T ss_dssp -------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCH
T ss_pred ecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCH
Confidence 43 369999999999999999998755456789999999999994 899999999996 578999999999999999
Q ss_pred hhhcC---------------CCeEEEEEEEcCCC
Q 006167 338 QEVLS---------------EKVYILFFIRANQR 356 (658)
Q Consensus 338 eev~s---------------~~aYmLfY~R~~~~ 356 (658)
++|+. ..||||||+|.+..
T Consensus 284 ~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 284 EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp HHHTGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred HHHHHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 98873 57999999998753
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.7e-57 Score=494.51 Aligned_cols=322 Identities=20% Similarity=0.263 Sum_probs=256.0
Q ss_pred ccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCC
Q 006167 20 RKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLT 99 (658)
Q Consensus 20 r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ 99 (658)
.+....|+||.|+||||||||+||+|+++|+||++|+........ .. ......+++++|..+|..++... .
T Consensus 8 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~-----~~---~~~~~~~l~~~l~~lf~~l~~~~-~ 78 (404)
T 2ayn_A 8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRA-----SG---EMASAQYITAALRDLFDSMDKTS-S 78 (404)
T ss_dssp ---CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC--------------CHHHHHHHHHHHHHHHHHHHC-S
T ss_pred HhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CC---CCCcccHHHHHHHHHHHHHhcCC-C
Confidence 334567799999999999999999999999999999986543100 00 11134578899999999988765 7
Q ss_pred ccChHHHHHHHHhhhhccCC------CCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccc
Q 006167 100 LDAPAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEI 173 (658)
Q Consensus 100 ~i~p~~l~~~L~~l~~~f~~------g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~l 173 (658)
.+.|..|+.+|+...+.|.+ ++||||+|||.+||+.|++++...... ...+......+........++|.++
T Consensus 79 ~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~s~i~~~ 156 (404)
T 2ayn_A 79 SIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDD--SVKETDSSSASAATPSKKKSLIDQF 156 (404)
T ss_dssp EECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC--------------------CCHHHHH
T ss_pred cCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCC--cccccchhhhhhhhccccCchhhhh
Confidence 89999999999999888884 899999999999999999986432110 0000000000111223456899999
Q ss_pred cceEEEEEEEeCCCCCee--ceeeeeeeEEeecccc-hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCC
Q 006167 174 FGGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250 (658)
Q Consensus 174 F~G~l~~~i~C~~C~~~S--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP 250 (658)
|+|.+.+.++|..|+..+ .+.|+|++|+|+|+.. .+|+++|+.++. |.++ |.|++|+....+.|+.+|.++|
T Consensus 157 F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP 231 (404)
T 2ayn_A 157 FGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLP 231 (404)
T ss_dssp TCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECC
T ss_pred ccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCC
Confidence 999999999999999995 7899999999999974 689999999986 4444 8999999999999999999999
Q ss_pred ceeEEEEeeeeecc----CCccceeEeccceeecccccccCC--------------------------------------
Q 006167 251 NILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS-------------------------------------- 288 (658)
Q Consensus 251 ~iLiI~LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~-------------------------------------- 288 (658)
+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 232 ~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (404)
T 2ayn_A 232 AYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKY 311 (404)
T ss_dssp SSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------
T ss_pred CceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccc
Confidence 99999999999853 379999999999999999986420
Q ss_pred ----------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcCCC-------eEEEEEE
Q 006167 289 ----------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEK-------VYILFFI 351 (658)
Q Consensus 289 ----------~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~-------aYmLfY~ 351 (658)
......|+|+|||+|.|.+.++|||+||+|+.+++||+|||+.|+++++++|+... ||||||+
T Consensus 312 e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~ 391 (404)
T 2ayn_A 312 EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYG 391 (404)
T ss_dssp CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEE
T ss_pred cccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEE
Confidence 12347899999999999779999999999998899999999999999999998755 9999999
Q ss_pred EcCCCC
Q 006167 352 RANQRP 357 (658)
Q Consensus 352 R~~~~~ 357 (658)
|.+...
T Consensus 392 r~~~~~ 397 (404)
T 2ayn_A 392 PRRVEI 397 (404)
T ss_dssp CC----
T ss_pred ecCCCC
Confidence 987643
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.4e-55 Score=488.83 Aligned_cols=312 Identities=30% Similarity=0.552 Sum_probs=261.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC----
Q 006167 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL---- 98 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~---- 98 (658)
.|. +||.|+||||||||+||+|+++|+||++++...+...+ . ......|+.+++..++..++....
T Consensus 139 ~G~-~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 208 (476)
T 3mhs_A 139 DGL-SGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNC-----K----VRSPDKCFSCALDKIVHELYGALNTKQA 208 (476)
T ss_dssp TCC-CCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHC-----S----SCCTTTCHHHHHHHHHHHHHSCCCC---
T ss_pred CCC-CCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhc-----c----CCCcccchHHHHHHHHHHHhhccccccc
Confidence 354 99999999999999999999999999999876543332 1 112456789999999998886432
Q ss_pred -----CccChHHHHHHHH---hhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCcc
Q 006167 99 -----TLDAPAKIQSCLR---IFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVV 170 (658)
Q Consensus 99 -----~~i~p~~l~~~L~---~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI 170 (658)
....|..+...+. ...+.|..++||||+|||.+||+.|++++.......... .........++|
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~--------~~~~~~~~~s~i 280 (476)
T 3mhs_A 209 SSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV--------SRANNKQCECIV 280 (476)
T ss_dssp -----CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC---------------CCCSCCSHH
T ss_pred ccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccc--------cccccccCCCcc
Confidence 2456666665554 678899999999999999999999999876543211000 011122456899
Q ss_pred ccccceEEEEEEEeCCCCCeec-eeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecC
Q 006167 171 KEIFGGALQSQVKCLACGAESN-KVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 171 ~~lF~G~l~~~i~C~~C~~~S~-~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~l 249 (658)
.++|+|.+.+.++|..|+.++. +.++|++|+|++++..+|+++|+.|+.+|.+++.+ |.|++|+....+.|+.+|.++
T Consensus 281 ~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~l 359 (476)
T 3mhs_A 281 HTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKL 359 (476)
T ss_dssp HHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEB
T ss_pred eeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccC
Confidence 9999999999999999999975 58999999999999999999999999999999755 999999999999999999999
Q ss_pred CceeEEEEeeeeecc---CCccceeEeccceeecccccccCCC--------CCCCceEEEEEEEeecCCCCCCcEEEEEE
Q 006167 250 PNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQ--------DPQPEYKLFGTIVHSGFSPDSGHYYAYIK 318 (658)
Q Consensus 250 P~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~--------~~~~~Y~L~aVI~H~G~s~~sGHYvayvr 318 (658)
|+||+|||+||.+.. ..|+++.|.||..|||.+|+..... .....|+|+|||+|.| +.++|||+||+|
T Consensus 360 P~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr 438 (476)
T 3mhs_A 360 PSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCK 438 (476)
T ss_dssp CSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEE
T ss_pred CcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEE
Confidence 999999999999743 3699999999999999999876543 2456799999999999 699999999999
Q ss_pred cCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcC
Q 006167 319 DAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 319 ~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~ 354 (658)
..+++||+|||+.|+++++++|+...||||||+|++
T Consensus 439 ~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 439 ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 888999999999999999999999999999999975
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3e-55 Score=480.95 Aligned_cols=296 Identities=21% Similarity=0.301 Sum_probs=247.2
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCc-hhhhhccCchHHHHHHHHHHHhcCCCCcc
Q 006167 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSA-LDAERKRECPFCILEKRIVRSLSVDLTLD 101 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~~~~~l~~~~~~~i 101 (658)
...|+||.|+||||||||+||+|+++|+||++|+.......+ ... ........+++++|..+|..++......+
T Consensus 21 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v 95 (415)
T 1vjv_A 21 AQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV-----SNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSV 95 (415)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCC-----SCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred CCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CCcccccccchhHHHHHHHHHHHHHhcCCCCcc
Confidence 566799999999999999999999999999999986543221 100 00011244789999999999998877899
Q ss_pred ChHHHHHHHHhhhhccC-------CCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCcccccc
Q 006167 102 APAKIQSCLRIFAEHFK-------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIF 174 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~f~-------~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF 174 (658)
.|..|+.+|....+.|. .++||||+|||.+||+.|++++.. ++|.++|
T Consensus 96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------------------~~i~~~F 150 (415)
T 1vjv_A 96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------------------KFSEDFR 150 (415)
T ss_dssp CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------------------HHHTTTC
T ss_pred CHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------------------chHHHHH
Confidence 99999999999989998 789999999999999999998631 5789999
Q ss_pred ceEEEEEEEeCCCCCee--ceeeeeeeEEeecccc-hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCc
Q 006167 175 GGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN 251 (658)
Q Consensus 175 ~G~l~~~i~C~~C~~~S--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~ 251 (658)
+ .+.+.++|..|+..+ .+.|+|++|+|+++.. .+|+++|+.|+.. .++ |.|+.|+....+.|+.+|.++|+
T Consensus 151 ~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~ 224 (415)
T 1vjv_A 151 I-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPK 224 (415)
T ss_dssp E-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBS
T ss_pred H-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCC
Confidence 9 999999999999996 5899999999999975 5899999999874 344 89999999999999999999999
Q ss_pred eeEEEEeeeeecc----CCccceeEeccceeecccccccCC---------------------------------------
Q 006167 252 ILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS--------------------------------------- 288 (658)
Q Consensus 252 iLiI~LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~--------------------------------------- 288 (658)
||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 225 vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~ 304 (415)
T 1vjv_A 225 FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVM 304 (415)
T ss_dssp EEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CC
T ss_pred eeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhcccccccccccc
Confidence 9999999999853 279999999999999999985310
Q ss_pred -----------------------------------CCCCCceEEEEEEEeecCCCCCCcEEEEEEc--CCCceEEEeCce
Q 006167 289 -----------------------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCNDSY 331 (658)
Q Consensus 289 -----------------------------------~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~--~~~~Wy~fNDs~ 331 (658)
......|+|+|||+|.|.++++|||+||+|+ ..++||+|||+.
T Consensus 305 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~ 384 (415)
T 1vjv_A 305 TPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDK 384 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTE
T ss_pred ccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCc
Confidence 1234789999999999977999999999998 689999999999
Q ss_pred eeeechhhhcCCC-------eEEEEEEEcC
Q 006167 332 VSVSTLQEVLSEK-------VYILFFIRAN 354 (658)
Q Consensus 332 Vt~is~eev~s~~-------aYmLfY~R~~ 354 (658)
|+++++++|.... ||||||+|++
T Consensus 385 V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 385 VSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 9999999998754 9999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-54 Score=487.60 Aligned_cols=294 Identities=28% Similarity=0.433 Sum_probs=253.3
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006167 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.| ++||.|+||||||||+||+|+++|+||++++...... . ....++.++|+.+|..++.+. ..+.
T Consensus 173 ~g-~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~~ 237 (522)
T 2f1z_A 173 TG-YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPVG 237 (522)
T ss_dssp TS-CCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-------S------CTTTCHHHHHHHHHHHHHHCS-SCBC
T ss_pred CC-ccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-------C------cccchHHHHHHHHHHHHhcCC-CccC
Confidence 45 4999999999999999999999999999997653211 0 123457788999998888765 5778
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 006167 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i 182 (658)
|..|...+. .+.|..++||||+|||.+||+.|++++... ...++|.++|+|++.+.+
T Consensus 238 ~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~---------------------~~~s~i~~lF~G~~~s~i 294 (522)
T 2f1z_A 238 TKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSYI 294 (522)
T ss_dssp CTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS---------------------TTTTHHHHHHCEEEEEEE
T ss_pred cHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC---------------------ccccchhhheeEEEEEEE
Confidence 888877654 367888999999999999999999876321 124689999999999999
Q ss_pred EeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee
Q 006167 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 183 ~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
+|..|++.+.+.|+|++|+|+|++..+|+++|..|+.+|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.+
T Consensus 295 ~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~ 373 (522)
T 2f1z_A 295 QCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMY 373 (522)
T ss_dssp CCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEE
T ss_pred EcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEE
Confidence 99999999999999999999999999999999999999999999999999996 47889999999999999999999998
Q ss_pred cc----CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeech
Q 006167 263 IF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTL 337 (658)
Q Consensus 263 ~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~ 337 (658)
+. ..|+++.|.||..|||.+|+..........|+|+|||+|.|. .++|||+||+|+ ..++||+|||+.|+++++
T Consensus 374 ~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~ 452 (522)
T 2f1z_A 374 DPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTK 452 (522)
T ss_dssp CSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCH
T ss_pred cccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCH
Confidence 53 369999999999999999998655455789999999999994 899999999996 578999999999999999
Q ss_pred hhhcC---------------CCeEEEEEEEcCCC
Q 006167 338 QEVLS---------------EKVYILFFIRANQR 356 (658)
Q Consensus 338 eev~s---------------~~aYmLfY~R~~~~ 356 (658)
++|+. ..||||||+|.+..
T Consensus 453 ~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 453 EEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp HHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred HHHHHhhcCCCccccccCcCCceEEEEEEECCch
Confidence 99874 57999999998753
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-51 Score=484.25 Aligned_cols=292 Identities=27% Similarity=0.353 Sum_probs=251.1
Q ss_pred CCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCC-------
Q 006167 25 PPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD------- 97 (658)
Q Consensus 25 ~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~------- 97 (658)
.++||.|+||||||||+||+|+++|+||++|+........ . .......++.+++..++..++...
T Consensus 343 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~---~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~ 414 (854)
T 3ihp_A 343 GYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQ-----N---APTDPTQDFSTQVAKLGHGLLSGEYSKPVPE 414 (854)
T ss_dssp TCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHH-----H---CCSCGGGCHHHHHHHHHHHHHSCC-------
T ss_pred CccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhc-----c---ccCCccccHHHHHHHHHHHHhcccccccccc
Confidence 3499999999999999999999999999999854321110 0 011244578899999998887642
Q ss_pred -------------CCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCccc
Q 006167 98 -------------LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETIN 164 (658)
Q Consensus 98 -------------~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~ 164 (658)
...+.|..|..++....+.|..++||||+|||.+||+.|++++.
T Consensus 415 ~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~----------------------- 471 (854)
T 3ihp_A 415 SGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR----------------------- 471 (854)
T ss_dssp --------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT-----------------------
T ss_pred ccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc-----------------------
Confidence 35899999999999999999999999999999999999998752
Q ss_pred CCCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccc--------------------------------hhHHH
Q 006167 165 GGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------------------------CSLKE 212 (658)
Q Consensus 165 ~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~--------------------------------~sLed 212 (658)
..+.|.++|+|.+.++++|..|+.++.+.++|++|+|+|+.. .+|++
T Consensus 472 -~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~d 550 (854)
T 3ihp_A 472 -SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSS 550 (854)
T ss_dssp -TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHH
T ss_pred -ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHH
Confidence 136789999999999999999999999999999999999853 48999
Q ss_pred HHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc---CCccceeEeccceeecccccccCC-
Q 006167 213 AMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKAS- 288 (658)
Q Consensus 213 ~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~- 288 (658)
||+.|+.+|.+++ |+|++|+..+.+.|+.+|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 551 cL~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q 627 (854)
T 3ihp_A 551 CLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 627 (854)
T ss_dssp HHHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSC
T ss_pred HHHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCC
Confidence 9999999999997 999999999999999999999999999999999832 369999999999999999965311
Q ss_pred --------------------------------------------------------------------------------
Q 006167 289 -------------------------------------------------------------------------------- 288 (658)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (658)
T Consensus 628 ~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~ 707 (854)
T 3ihp_A 628 PGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSS 707 (854)
T ss_dssp TTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC---
T ss_pred CCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006167 289 -------------------------------------------------------------------------------- 288 (658)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (658)
T Consensus 708 ~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (854)
T 3ihp_A 708 GPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVG 787 (854)
T ss_dssp -----------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------
T ss_pred cccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcC
Q 006167 289 ---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 289 ---~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~ 354 (658)
.+....|+|+|||+|.|.+.++|||+||+|. .++||+|||+.|+++ ++.....||||||+|.+
T Consensus 788 ~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 788 PKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 0012269999999999988899999999999 799999999999997 45677899999999986
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=2.3e-27 Score=250.46 Aligned_cols=228 Identities=22% Similarity=0.292 Sum_probs=151.9
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006167 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.|.|+||.|+||||||||.||+|+++|++++.|+.+...... .. ....+...|.+.+.+.++. ..+.
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-----~~------~~~~l~~~L~r~i~~~Lrk--~~~~ 72 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-----VE------YYSETQELLRTEIVNPLRI--YGYV 72 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-----CT------THHHHHHHHHHTTHHHHHH--TSEE
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-----ch------hHHHHHHHHHHHHHHHHhh--cCCC
Confidence 577899999999999999999999999999999987532110 00 0001344453444444443 6788
Q ss_pred hHHHHHHHHhhhhccCC-----CCcccHHHHHHHHHHHHHHH-hHhhhhhccCCCCCCCCCCCCCcccCCCCccccccce
Q 006167 103 PAKIQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNT-CLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~-----g~QqDA~EFl~~LLd~L~~e-l~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
|..++..|+...+.|.. .+||||.||+..||..|... .. . +..... . ....+.+.++|.-
T Consensus 73 P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~-l-kl~s~~---~---------~~~~~~~~q~f~E 138 (374)
T 2vhf_A 73 CATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPL-L-KIRSAG---Q---------KVQDCYFYQIFME 138 (374)
T ss_dssp CHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCS-E-EEEETT---C---------CCEEESCEECCCC
T ss_pred cHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccc-c-cccccc---c---------cccccHHHHHhcC
Confidence 99999999988887764 58999999999999988753 10 0 000000 0 0112456666650
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEE
Q 006167 177 ALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQ 256 (658)
Q Consensus 177 ~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~ 256 (658)
+ .+. . ...+++++++..+-. +| +.|.++|++|+||
T Consensus 139 --------------~--~e~---~-----~~e~~~qL~e~nfl~---~g------------------ikisrLP~yLtVq 173 (374)
T 2vhf_A 139 --------------K--NEK---V-----GVPTIQQLLEWSFIN---SN------------------LKFAEAPSCLIIQ 173 (374)
T ss_dssp --------------C--C-----C-----CCCBHHHHHHHHHHH---HT------------------EEESSCCSEEEEE
T ss_pred --------------c--ccc---c-----CCcHHHHhhhHHHHH---cC------------------CeeecCCcceEEe
Confidence 0 000 0 023444444332111 11 2299999999999
Q ss_pred EeeeeeccCCccceeEeccceeecccccccCC--------------------------C---------------------
Q 006167 257 LKRFEGIFGGKIDKAIAFEEVLVLSSFMCKAS--------------------------Q--------------------- 289 (658)
Q Consensus 257 LkRF~~~~~~Ki~~~V~fP~~LdL~~~~~~~~--------------------------~--------------------- 289 (658)
+.||. ...|+.+.|.||.+||+.+++.+.. .
T Consensus 174 ~vRFg--KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (374)
T 2vhf_A 174 MPRFG--KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNH 251 (374)
T ss_dssp CCCCS--SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTC
T ss_pred eeccC--ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcc
Confidence 99993 4469999999999999988875321 0
Q ss_pred --------------------CCCCceEEEEEEEeecCCCCCCcEEEEEEc--CCCceEEEeC
Q 006167 290 --------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCND 329 (658)
Q Consensus 290 --------------------~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~--~~~~Wy~fND 329 (658)
.+...|+|+|||+ +++|||+||||. .+++|+.||-
T Consensus 252 ~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 252 KYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred cccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126899999999 677999999998 5799999986
No 12
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=97.43 E-value=0.00043 Score=59.67 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=53.4
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 006167 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 651 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (658)
.+.|++--..-|..|||.|+|...-|+.=|.. ...+.++|=..+.-.|. ..||++.|.+|+.++|.|-++
T Consensus 22 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~-----~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 22 YELISNELKARLLQEGWVDKVKDLTKSEMNIN-----ESTNFTQILSTVEPKAL----EMVSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 34455555667999999999999888754433 45578887777766664 569999999999999999754
No 13
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00062 Score=59.21 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccC-CCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 006167 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVG-ITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 651 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (658)
.+.|++.-..-|.-|||.|+|...-|.. +++.| ...+.++|=..+.--|. ..||++.|.+|+.|+|.|-++
T Consensus 26 ~erL~~lL~~rL~EcGW~Devr~~~r~~----i~~~g~~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~rIr~fL~~ 97 (101)
T 4dhx_B 26 RERLKELLRAKLIECGWKDQLKAHCKEV----IKEKGLEHVTVDDLVAEITPKGR----ALVPDSVKKELLQRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHH----HHHHCTTTCCHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHH----HHHcCCCCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 3445555556789999999999887763 33345 35688887777666664 569999999999999999754
No 14
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.16 E-value=0.0032 Score=61.61 Aligned_cols=181 Identities=16% Similarity=0.251 Sum_probs=101.2
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHHH
Q 006167 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKI 106 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~l 106 (658)
+=|+=.-|+||+||++-+|-++... . . ++...| ..-+|..|
T Consensus 14 ~vLkq~dNNCwVNaa~l~LQ~~~~~------~-----------~--------------~aw~~f--------~~Gd~~~f 54 (211)
T 3mp2_A 14 IILKQGDNNCWINACCYQLQAFDFF------N-----------N--------------EAWEKF--------KKGDVMDF 54 (211)
T ss_dssp EEECCCTTCHHHHHHHHHHTTCTTC------C-----------C--------------HHHHHH--------TTTCCHHH
T ss_pred EEEEccCCCcHHHHHHHHHHhcChh------H-----------H--------------HHHHHH--------hCCChHHH
Confidence 3455556999999999877665543 0 0 011111 23456666
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCC
Q 006167 107 QSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLA 186 (658)
Q Consensus 107 ~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~ 186 (658)
...+.... ....|+..||+++|..|+..+. ...+.....|.
T Consensus 55 V~~~Ya~~-~~~~G~~gDa~~~L~~Ll~~~~-------------------------------------~a~~v~~~~C~- 95 (211)
T 3mp2_A 55 VNLCYAAT-TLARGHSGDAEYLLELMLNDYS-------------------------------------TAKIVLAAKCG- 95 (211)
T ss_dssp HHHHHHHH-TCCTTSCCCHHHHHHHHHTTCC-------------------------------------CEEEEEEEEET-
T ss_pred HHHHHHHc-CCCCCCCcCHHHHHHHHHHhhc-------------------------------------cceEEEEEEEc-
Confidence 66655433 4556889999999999973211 12345567888
Q ss_pred CCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCcc-ccccCCCcceeEEEEEEecCCceeEEEEeeeeeccC
Q 006167 187 CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKY-KCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 187 C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky-~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
|+.. .+.+....+.+... . ... .| .|..|+..... ++.+.+-.++|.=
T Consensus 96 Cg~~---~~~~~G~v~~~~~~-----------~-~~~----~~g~C~~c~~~~~~----~v~~v~Gt~i~~~-------- 144 (211)
T 3mp2_A 96 CGEK---EIVLERAVFKLTPL-----------K-ESF----NYGVCGDCMQVNTC----RFLSVEGSGVFVH-------- 144 (211)
T ss_dssp TEEE---EEEEEESEEESCCB-----------S-SCE----EEEECTTTCCEEEE----EEEEEEEEEEEEE--------
T ss_pred CCCc---eEEEeeeEEEEEee-----------e-cCC----CceECCCCCceeEE----EEEEeeeeEEEEc--------
Confidence 8873 23333333333220 0 111 15 89999864321 2333332222220
Q ss_pred CccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeec
Q 006167 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVST 336 (658)
Q Consensus 266 ~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is 336 (658)
. ..|..++.....-. -.+-+++.| +.++|||+.+.... + +.+|-..+.+++
T Consensus 145 ----~--~~~~~v~~~~~~v~----------~~~~~vF~G-~~~~GHY~~~~~~~-~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 145 ----D--ILSKQTPEAMFVVK----------PVMHAVYTG-TTQNGHYMVDDIEH-G--YCVDGMGIKPLK 195 (211)
T ss_dssp ----E--EECSCCCGGGBSSC----------CSEEEEEES-CTTTCEEEEEETTT-T--EEEETTEEECCC
T ss_pred ----C--CCCcccccccceee----------ceeEEEEEc-CCCCceEEEEeccc-c--eEEeCCceeEcc
Confidence 0 12334444433221 135577799 69999999997662 2 888988888886
No 15
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.87 E-value=0.047 Score=56.65 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.8
Q ss_pred EEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeech
Q 006167 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTL 337 (658)
Q Consensus 298 ~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~ 337 (658)
++..++.| +.++|||+.+... ... |++|-..+.+++.
T Consensus 260 ~~a~vF~G-~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTG-NYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEES-CGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEEEC-CCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 44555689 6789999998875 222 8999999998863
No 16
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=71.34 E-value=1.9 Score=39.20 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcCCCCC
Q 006167 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPV 358 (658)
Q Consensus 298 ~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~~~~~ 358 (658)
+|-|.-.|. +|-+-++-. +..||.+||+...+...... =+|+|.--++.|.
T Consensus 110 hAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPdps-----dVLVfvPyDqEpl 160 (167)
T 1qmy_A 110 HAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPL 160 (167)
T ss_dssp EEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCCGG-----GEEEEEECC----
T ss_pred hhheeecCC----CceEEEEEc-cCceEEecccccccCCCChh-----hEEEEccCCcccc
Confidence 556666675 898888777 78899999999999753221 2466666665543
No 17
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=37.97 E-value=17 Score=29.51 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhccCCCCCCCC
Q 006167 636 SLKDDLVKHLRSFSDGKRGFPGA 658 (658)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~ 658 (658)
..|.+||+||+.|.+++-+-||+
T Consensus 47 G~KaeLIeRL~~~~~~~~~~~~~ 69 (75)
T 2kvu_A 47 GTKTELIERLRAYQDQISPVPGA 69 (75)
T ss_dssp SCHHHHHHHHHHHHHTTSCCSSS
T ss_pred CCHHHHHHHHHHHHHccCCCCCC
Confidence 45889999999998887776664
No 18
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=34.08 E-value=1.6e+02 Score=27.34 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=43.9
Q ss_pred cccccCCCcceeEEEEEEecCCceeEEEEeeeeeccCCccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeecCC
Q 006167 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS 307 (658)
Q Consensus 229 y~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s 307 (658)
++|..|++...+. |...|.+ ..+......|....+.|. .-|.+..|... ..|... +
T Consensus 71 ~KCk~C~re~Si~----i~~~~~~-----~~y~~~d~~k~~~i~~FDCRGlEp~eF~p~------~~w~a~--------~ 127 (164)
T 1zso_A 71 IKWTEYPKYSTIN----FVNTKNS-----CSYEEVNNNEWRDFASFECRGIELIDFFPS------NNFIVE--------D 127 (164)
T ss_dssp ECCSSSSCCEEEE----EECCTTT-----TEEEGGGTTSCEEEEEEEEESEEEEEECCC------SCEEEE--------E
T ss_pred EeccccCCcceEE----EEeCCCC-----cccccccCCCceEEEEEECCCeeeEEEecC------CcEEEE--------E
Confidence 7999998755443 4444421 011112223445556665 23444444322 223322 2
Q ss_pred CCCCcEEEEEEcCCCceEEEeCceeeeechhh
Q 006167 308 PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQE 339 (658)
Q Consensus 308 ~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~ee 339 (658)
..+| -+.-|--..+.|+-||+..-.+|+..+
T Consensus 128 ~esG-~f~dvDLse~eW~DYDEk~~~~VsI~e 158 (164)
T 1zso_A 128 TKGK-LYYDVNLSDQNWCDYNEEHEMCVGIYN 158 (164)
T ss_dssp TTSC-EEEEECCTTSCEEEEETTTTEEEEEEE
T ss_pred CCCC-cEEeeecCCCceeccccCCCCeEEEEE
Confidence 4567 332232245789999997666655433
No 19
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=32.51 E-value=98 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred CcccccCCCcchHHHHHHHHhcC-hHHHHHHH
Q 006167 26 PLGLRNLGNSCYLNSVLQCLTYT-PPLANFCL 56 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~i-p~Fr~~Ll 56 (658)
..|+.|..++||+|++||+...+ .+|.+...
T Consensus 13 fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 35999999999999999998754 23444443
No 20
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=30.79 E-value=72 Score=28.68 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcc
Q 006167 179 QSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLV 238 (658)
Q Consensus 179 ~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~ 238 (658)
.-...|.+||+.....+....|.-.... ...+.+|.+.. .+.||.|+...
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~--------~~h~~p~~~~~--~~~CP~Cgs~~ 117 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKE--------DIHFIPEVVHA--FLACPKCGSHD 117 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGG--------GCCCCGGGCGG--GCSCSSSSCCC
T ss_pred CCcEECCCCCCEEecccccccccccccc--------ccccccccccc--CCcCccccCCc
Confidence 3467899999886533211111100000 11234444432 27899999765
No 21
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=29.86 E-value=20 Score=23.27 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhhhhc
Q 006167 591 EKVLSYMRSRKRQCAHE 607 (658)
Q Consensus 591 ~~~~~~~~~~~~~~~~~ 607 (658)
-++.+||.|-||..+.+
T Consensus 11 tdilsfmksgkraaale 27 (33)
T 3c0t_B 11 TDILSFMKSGKRAAALE 27 (33)
T ss_dssp HHHHHHHHHCCCCGGGC
T ss_pred HHHHHHHHcchHHHHHH
Confidence 46889999999987765
No 22
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=29.22 E-value=21 Score=21.53 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=6.8
Q ss_pred hHHHHHHH
Q 006167 590 SEKVLSYM 597 (658)
Q Consensus 590 ~~~~~~~~ 597 (658)
+|+||+|+
T Consensus 10 mddvynyl 17 (22)
T 3e1k_B 10 MDDVYNYI 17 (26)
T ss_pred HHHHHHHh
Confidence 78999986
No 23
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.64 E-value=24 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhc
Q 006167 636 SLKDDLVKHLRSFS 649 (658)
Q Consensus 636 ~~~~~~~~~~~~~~ 649 (658)
.-+|.||+||++|-
T Consensus 29 g~REElvdRLk~Y~ 42 (58)
T 2do5_A 29 GNREELVERLQSYT 42 (58)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 44899999999993
No 24
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=23.19 E-value=53 Score=31.38 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=36.6
Q ss_pred EEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeee--chhhh------cCCCeEEEEEEEc
Q 006167 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVS--TLQEV------LSEKVYILFFIRA 353 (658)
Q Consensus 297 L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~i--s~eev------~s~~aYmLfY~R~ 353 (658)
..|+||+.. -|++|..|- ++.||-+|-..-.+. +...+ +....|-+|-++-
T Consensus 110 ~~~FI~N~~-----~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g 168 (191)
T 3o65_A 110 ERSFICNYK-----QHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKG 168 (191)
T ss_dssp CCEEEEEES-----SCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEES
T ss_pred hhhhhhccc-----cceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcC
Confidence 468999986 899998888 789999998654443 22211 1367888888874
No 25
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=22.08 E-value=35 Score=21.39 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.6
Q ss_pred hHHHHHHHH
Q 006167 590 SEKVLSYMR 598 (658)
Q Consensus 590 ~~~~~~~~~ 598 (658)
+|+||+|+-
T Consensus 8 MDDvyNylF 16 (26)
T 3bts_E 8 MDDVYNYLF 16 (26)
T ss_pred HHHHHHHhc
Confidence 799999974
No 26
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.02 E-value=45 Score=25.05 Aligned_cols=12 Identities=25% Similarity=0.985 Sum_probs=8.9
Q ss_pred EEEEEeCCCCCe
Q 006167 179 QSQVKCLACGAE 190 (658)
Q Consensus 179 ~~~i~C~~C~~~ 190 (658)
...+.|..|++.
T Consensus 13 ~~~~~Cp~Cg~~ 24 (57)
T 1qyp_A 13 TTKITCPKCGND 24 (57)
T ss_dssp EEECCCTTTCCS
T ss_pred ceEeECCCCCCC
Confidence 346789999973
Done!