Query 006170
Match_columns 658
No_of_seqs 97 out of 106
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 19:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003 Actin filament-coating 100.0 1E-33 2.2E-38 275.7 19.6 188 367-575 2-199 (205)
2 PF00261 Tropomyosin: Tropomyo 100.0 1.7E-28 3.8E-33 243.1 21.1 213 341-574 1-230 (237)
3 PF12718 Tropomyosin_1: Tropom 99.2 2.4E-10 5.1E-15 107.7 13.8 107 332-438 33-142 (143)
4 PF00261 Tropomyosin: Tropomyo 99.2 4.5E-10 9.8E-15 112.3 16.3 216 289-522 2-231 (237)
5 PRK02224 chromosome segregatio 99.1 6.1E-06 1.3E-10 95.0 46.2 186 335-528 510-700 (880)
6 PRK02224 chromosome segregatio 99.1 1.7E-05 3.7E-10 91.4 48.4 44 229-272 262-305 (880)
7 COG1196 Smc Chromosome segrega 98.9 2.4E-06 5.2E-11 102.3 34.2 256 335-597 766-1041(1163)
8 TIGR02168 SMC_prok_B chromosom 98.9 4.5E-06 9.7E-11 96.3 32.7 25 501-525 964-988 (1179)
9 TIGR02169 SMC_prok_A chromosom 98.8 1.9E-05 4.1E-10 91.9 36.5 16 499-514 955-970 (1164)
10 TIGR02169 SMC_prok_A chromosom 98.8 5.6E-05 1.2E-09 88.1 39.6 53 209-261 151-206 (1164)
11 TIGR00606 rad50 rad50. This fa 98.7 0.00051 1.1E-08 83.7 44.5 69 107-182 598-666 (1311)
12 TIGR02168 SMC_prok_B chromosom 98.7 0.00014 3.1E-09 84.2 36.3 57 508-564 964-1023(1179)
13 TIGR00606 rad50 rad50. This fa 98.5 0.0079 1.7E-07 73.7 46.8 56 243-298 574-629 (1311)
14 KOG0161 Myosin class II heavy 98.4 0.007 1.5E-07 76.5 44.2 347 215-574 947-1327(1930)
15 KOG0161 Myosin class II heavy 98.4 0.0014 3E-08 82.5 37.9 133 428-567 1065-1208(1930)
16 COG1196 Smc Chromosome segrega 98.4 0.0023 4.9E-08 77.4 37.2 50 479-528 947-996 (1163)
17 PRK03918 chromosome segregatio 98.3 0.014 3E-07 67.6 45.6 35 459-493 548-582 (880)
18 KOG0971 Microtubule-associated 98.3 0.0016 3.5E-08 76.5 31.5 277 297-573 219-557 (1243)
19 PRK04863 mukB cell division pr 98.1 0.0068 1.5E-07 75.4 35.1 61 206-266 274-334 (1486)
20 KOG4674 Uncharacterized conser 98.1 0.031 6.7E-07 70.4 40.2 293 227-561 656-985 (1822)
21 PHA02562 46 endonuclease subun 98.1 0.006 1.3E-07 67.0 30.7 105 424-528 298-405 (562)
22 KOG4674 Uncharacterized conser 98.0 0.13 2.9E-06 64.9 41.6 338 217-574 691-1093(1822)
23 KOG0994 Extracellular matrix g 97.9 0.014 3.1E-07 70.2 31.2 255 257-565 1493-1748(1758)
24 PF12718 Tropomyosin_1: Tropom 97.9 0.00062 1.3E-08 64.7 16.8 139 378-566 2-140 (143)
25 KOG0976 Rho/Rac1-interacting s 97.9 0.013 2.8E-07 68.7 29.8 304 260-574 34-356 (1265)
26 PF05701 WEMBL: Weak chloropla 97.9 0.077 1.7E-06 59.7 35.9 330 228-572 58-424 (522)
27 PRK03918 chromosome segregatio 97.9 0.1 2.2E-06 60.6 47.7 16 559-574 677-692 (880)
28 KOG1003 Actin filament-coating 97.9 0.0034 7.4E-08 63.2 21.0 184 333-519 3-196 (205)
29 PF07888 CALCOCO1: Calcium bin 97.8 0.1 2.2E-06 59.5 34.9 107 370-483 277-387 (546)
30 PF10174 Cast: RIM-binding pro 97.8 0.14 3E-06 60.6 40.7 87 333-419 335-421 (775)
31 KOG0996 Structural maintenance 97.8 0.19 4.1E-06 61.3 37.1 314 247-582 289-620 (1293)
32 PRK01156 chromosome segregatio 97.8 0.16 3.5E-06 59.6 44.9 26 146-171 195-220 (895)
33 PF12128 DUF3584: Protein of u 97.8 0.24 5.1E-06 60.9 40.0 231 210-443 415-703 (1201)
34 PF07888 CALCOCO1: Calcium bin 97.6 0.11 2.5E-06 59.1 31.2 49 429-477 280-328 (546)
35 PRK11637 AmiB activator; Provi 97.5 0.12 2.6E-06 56.3 28.6 104 305-419 43-148 (428)
36 KOG0994 Extracellular matrix g 97.5 0.17 3.7E-06 61.7 31.0 97 218-320 1334-1461(1758)
37 PF10174 Cast: RIM-binding pro 97.5 0.41 8.9E-06 56.8 40.4 198 324-531 228-451 (775)
38 KOG0996 Structural maintenance 97.5 0.54 1.2E-05 57.6 35.7 62 223-291 776-837 (1293)
39 KOG0971 Microtubule-associated 97.4 0.22 4.8E-06 59.5 29.5 300 228-562 234-553 (1243)
40 PRK04863 mukB cell division pr 97.2 1.1 2.5E-05 56.5 37.7 39 536-574 553-591 (1486)
41 KOG0933 Structural maintenance 97.2 0.92 2E-05 55.1 41.1 67 233-299 407-473 (1174)
42 PRK01156 chromosome segregatio 97.2 0.86 1.9E-05 53.8 35.4 30 153-182 414-443 (895)
43 KOG0933 Structural maintenance 97.2 1.1 2.3E-05 54.5 33.4 319 199-558 148-503 (1174)
44 PF01576 Myosin_tail_1: Myosin 97.0 0.00015 3.2E-09 85.2 0.0 222 338-572 571-816 (859)
45 PF00038 Filament: Intermediat 97.0 0.55 1.2E-05 48.5 27.8 70 499-568 213-289 (312)
46 PRK04778 septation ring format 97.0 1 2.2E-05 51.3 37.8 128 333-466 255-385 (569)
47 KOG0250 DNA repair protein RAD 97.0 0.45 9.7E-06 57.8 27.5 38 293-331 233-270 (1074)
48 KOG0995 Centromere-associated 96.9 1.2 2.7E-05 51.2 33.1 317 223-560 204-547 (581)
49 PF05701 WEMBL: Weak chloropla 96.8 1.4 2.9E-05 50.0 38.3 217 208-453 197-414 (522)
50 PF09726 Macoilin: Transmembra 96.8 0.17 3.6E-06 59.3 21.5 219 216-478 419-654 (697)
51 PHA02562 46 endonuclease subun 96.7 0.74 1.6E-05 50.9 24.7 86 333-418 298-386 (562)
52 PRK11637 AmiB activator; Provi 96.6 0.98 2.1E-05 49.3 25.3 34 528-561 220-253 (428)
53 KOG0250 DNA repair protein RAD 96.6 2.2 4.7E-05 52.3 29.7 33 529-561 431-463 (1074)
54 PF09787 Golgin_A5: Golgin sub 96.6 1.9 4E-05 48.7 27.6 65 499-572 366-430 (511)
55 TIGR03007 pepcterm_ChnLen poly 96.5 0.31 6.7E-06 53.5 20.7 35 543-577 350-384 (498)
56 PF12128 DUF3584: Protein of u 96.5 3.3 7.3E-05 51.2 45.2 139 429-574 604-758 (1201)
57 KOG0977 Nuclear envelope prote 96.5 1.3 2.9E-05 50.9 25.4 87 333-419 119-219 (546)
58 PF09726 Macoilin: Transmembra 96.4 1.3 2.8E-05 52.2 25.4 59 499-557 591-652 (697)
59 KOG0612 Rho-associated, coiled 96.3 2.5 5.5E-05 52.3 27.9 89 341-433 508-596 (1317)
60 PF05557 MAD: Mitotic checkpoi 96.1 0.0014 3E-08 75.5 0.0 191 370-575 224-426 (722)
61 KOG0978 E3 ubiquitin ligase in 96.1 4.4 9.6E-05 47.9 33.4 224 272-521 376-613 (698)
62 PF06008 Laminin_I: Laminin Do 96.1 2 4.4E-05 44.0 22.8 208 229-448 49-257 (264)
63 PF06160 EzrA: Septation ring 96.0 4.2 9.1E-05 46.5 39.3 150 333-491 251-403 (560)
64 PF01576 Myosin_tail_1: Myosin 95.9 0.002 4.3E-08 76.1 0.0 318 231-559 186-536 (859)
65 KOG0946 ER-Golgi vesicle-tethe 95.8 1.7 3.7E-05 51.9 22.7 106 280-392 645-760 (970)
66 KOG0977 Nuclear envelope prote 95.8 1.9 4.1E-05 49.6 22.4 302 146-512 47-387 (546)
67 TIGR01005 eps_transp_fam exopo 95.6 2.7 5.9E-05 48.9 23.5 71 367-450 192-262 (754)
68 PRK04778 septation ring format 95.5 6.3 0.00014 45.1 34.9 288 268-573 99-429 (569)
69 KOG0018 Structural maintenance 95.3 10 0.00022 46.9 27.0 221 335-582 677-911 (1141)
70 KOG0963 Transcription factor/C 95.3 8.1 0.00018 45.2 35.4 186 208-414 55-273 (629)
71 PF05483 SCP-1: Synaptonemal c 95.2 9.3 0.0002 45.3 35.2 123 369-534 349-475 (786)
72 KOG0946 ER-Golgi vesicle-tethe 95.1 1.1 2.3E-05 53.5 18.0 107 368-474 691-800 (970)
73 PF12777 MT: Microtubule-bindi 95.0 2.3 4.9E-05 45.6 18.9 96 469-571 216-314 (344)
74 PF00038 Filament: Intermediat 94.9 5.5 0.00012 41.2 32.1 56 499-554 227-282 (312)
75 KOG0995 Centromere-associated 94.7 11 0.00024 43.7 29.8 86 255-356 195-281 (581)
76 PF05557 MAD: Mitotic checkpoi 94.6 0.0098 2.1E-07 68.7 0.0 141 370-517 275-428 (722)
77 COG1579 Zn-ribbon protein, pos 94.2 1.7 3.7E-05 45.3 15.3 65 335-399 18-82 (239)
78 COG1579 Zn-ribbon protein, pos 94.2 7.7 0.00017 40.6 19.9 27 532-558 147-173 (239)
79 PRK11281 hypothetical protein; 94.2 2.8 6.1E-05 51.8 19.3 30 492-521 282-311 (1113)
80 PF10473 CENP-F_leu_zip: Leuci 94.2 3.7 8E-05 39.8 16.3 93 326-419 10-102 (140)
81 PRK10929 putative mechanosensi 94.2 21 0.00045 44.7 33.4 76 532-624 385-460 (1109)
82 PRK11281 hypothetical protein; 94.1 21 0.00045 44.6 37.0 58 244-301 126-183 (1113)
83 KOG0612 Rho-associated, coiled 94.0 23 0.00049 44.6 34.1 40 258-297 492-531 (1317)
84 PF05010 TACC: Transforming ac 93.9 8.6 0.00019 39.4 22.2 193 372-574 5-201 (207)
85 TIGR03185 DNA_S_dndD DNA sulfu 93.9 16 0.00034 42.4 29.3 40 142-181 210-249 (650)
86 PRK09039 hypothetical protein; 93.9 8.9 0.00019 41.5 20.4 47 340-386 45-91 (343)
87 PF05911 DUF869: Plant protein 93.9 6.8 0.00015 46.9 21.0 74 426-516 681-761 (769)
88 PRK09039 hypothetical protein; 93.8 3.6 7.8E-05 44.5 17.3 53 335-387 47-99 (343)
89 PF14915 CCDC144C: CCDC144C pr 93.7 12 0.00027 40.5 25.8 179 380-575 88-291 (305)
90 PF14915 CCDC144C: CCDC144C pr 93.6 13 0.00028 40.3 22.6 149 244-404 75-228 (305)
91 PF10168 Nup88: Nuclear pore c 93.5 0.77 1.7E-05 54.1 12.6 139 431-576 575-713 (717)
92 PF05667 DUF812: Protein of un 93.5 19 0.00042 42.0 24.0 76 499-574 444-531 (594)
93 KOG0976 Rho/Rac1-interacting s 93.4 24 0.00052 42.9 32.8 278 229-527 96-383 (1265)
94 COG0419 SbcC ATPase involved i 93.1 25 0.00055 42.4 47.3 24 263-286 406-429 (908)
95 PF00769 ERM: Ezrin/radixin/mo 92.9 1.3 2.8E-05 45.8 11.7 123 347-490 4-126 (246)
96 PF15070 GOLGA2L5: Putative go 92.8 24 0.00053 41.4 31.8 141 267-418 167-314 (617)
97 PF05622 HOOK: HOOK protein; 92.7 0.053 1.1E-06 62.8 1.6 170 370-569 240-412 (713)
98 PLN02939 transferase, transfer 92.5 23 0.00049 43.8 22.8 156 337-528 166-350 (977)
99 PF04012 PspA_IM30: PspA/IM30 92.4 11 0.00025 37.4 17.3 20 502-521 165-184 (221)
100 TIGR00634 recN DNA repair prot 92.3 18 0.00039 41.2 20.9 9 589-597 420-428 (563)
101 PF14073 Cep57_CLD: Centrosome 92.3 6.9 0.00015 39.5 15.4 145 336-522 6-154 (178)
102 TIGR03185 DNA_S_dndD DNA sulfu 91.8 30 0.00065 40.2 29.5 123 268-396 160-289 (650)
103 TIGR01843 type_I_hlyD type I s 91.8 20 0.00043 37.9 20.0 40 546-585 244-283 (423)
104 PF08317 Spc7: Spc7 kinetochor 91.7 9.9 0.00021 40.6 17.0 52 252-308 125-176 (325)
105 PF14662 CCDC155: Coiled-coil 91.6 18 0.00038 37.1 19.7 113 388-514 16-128 (193)
106 KOG0963 Transcription factor/C 91.5 35 0.00075 40.3 34.2 402 92-550 11-434 (629)
107 PF05622 HOOK: HOOK protein; 91.4 0.11 2.3E-06 60.4 2.2 71 372-449 462-533 (713)
108 PF14662 CCDC155: Coiled-coil 91.4 19 0.0004 37.0 18.9 144 333-480 35-185 (193)
109 COG5185 HEC1 Protein involved 91.4 32 0.00069 39.7 28.7 327 209-558 218-586 (622)
110 PF05911 DUF869: Plant protein 91.4 40 0.00087 40.7 24.8 122 368-510 595-716 (769)
111 PF06008 Laminin_I: Laminin Do 91.3 20 0.00042 37.0 27.7 86 336-421 47-144 (264)
112 PRK10929 putative mechanosensi 91.1 51 0.0011 41.4 28.9 31 493-523 263-293 (1109)
113 TIGR01005 eps_transp_fam exopo 90.4 43 0.00093 39.3 22.9 31 369-399 237-267 (754)
114 PLN03188 kinesin-12 family pro 90.3 63 0.0014 41.1 25.8 119 453-573 1121-1250(1320)
115 KOG4593 Mitotic checkpoint pro 90.3 47 0.001 39.7 37.0 144 277-420 115-274 (716)
116 TIGR02977 phageshock_pspA phag 90.0 23 0.00051 35.8 19.1 80 339-418 29-113 (219)
117 PF15070 GOLGA2L5: Putative go 90.0 47 0.001 39.2 33.8 135 270-404 11-157 (617)
118 PRK10869 recombination and rep 89.7 44 0.00096 38.5 24.9 16 423-438 294-309 (553)
119 TIGR03017 EpsF chain length de 89.2 37 0.00079 36.9 25.7 31 546-576 340-370 (444)
120 PF10473 CENP-F_leu_zip: Leuci 88.9 24 0.00052 34.4 16.3 92 412-517 11-102 (140)
121 KOG4673 Transcription factor T 88.9 61 0.0013 39.1 34.2 104 368-486 522-631 (961)
122 PF11559 ADIP: Afadin- and alp 88.8 12 0.00026 35.4 13.2 34 458-491 57-90 (151)
123 PF15397 DUF4618: Domain of un 88.5 36 0.00077 36.3 17.5 143 392-572 8-155 (258)
124 KOG0979 Structural maintenance 88.4 76 0.0017 39.5 22.8 221 334-570 181-407 (1072)
125 KOG0982 Centrosomal protein Nu 88.3 51 0.0011 37.7 19.2 163 368-574 249-429 (502)
126 KOG0249 LAR-interacting protei 88.1 27 0.00058 42.0 17.6 123 378-512 65-187 (916)
127 PF13851 GAS: Growth-arrest sp 88.1 27 0.00058 35.3 15.8 99 458-556 17-129 (201)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.0 23 0.00051 33.2 17.6 74 500-573 57-130 (132)
129 KOG0980 Actin-binding protein 88.0 77 0.0017 39.1 27.6 63 340-402 388-450 (980)
130 COG3883 Uncharacterized protei 87.1 46 0.001 35.6 18.4 62 499-572 166-227 (265)
131 PF05667 DUF812: Protein of un 87.0 71 0.0015 37.6 21.4 38 520-557 488-528 (594)
132 PLN02939 transferase, transfer 86.7 77 0.0017 39.4 21.0 51 468-528 352-402 (977)
133 PF15619 Lebercilin: Ciliary p 86.6 39 0.00085 34.2 19.5 23 469-491 120-142 (194)
134 TIGR02680 conserved hypothetic 86.4 1.1E+02 0.0023 39.2 30.3 125 308-440 222-348 (1353)
135 TIGR01843 type_I_hlyD type I s 86.2 49 0.0011 35.0 17.5 16 466-481 252-267 (423)
136 KOG0018 Structural maintenance 86.2 1E+02 0.0022 38.7 26.6 77 229-305 687-763 (1141)
137 COG0419 SbcC ATPase involved i 86.1 88 0.0019 37.9 47.9 73 52-124 118-195 (908)
138 KOG4438 Centromere-associated 85.4 74 0.0016 36.3 28.0 168 399-570 218-429 (446)
139 smart00787 Spc7 Spc7 kinetocho 85.3 19 0.00042 38.8 13.8 46 253-303 121-166 (312)
140 TIGR00634 recN DNA repair prot 84.9 79 0.0017 36.2 21.8 17 422-438 298-314 (563)
141 PRK10698 phage shock protein P 84.4 52 0.0011 33.8 20.8 13 474-486 173-185 (222)
142 TIGR03017 EpsF chain length de 84.1 69 0.0015 34.9 19.5 46 505-551 321-366 (444)
143 PF11559 ADIP: Afadin- and alp 83.8 40 0.00086 31.9 15.1 90 363-477 60-150 (151)
144 COG1340 Uncharacterized archae 83.0 76 0.0016 34.5 30.3 212 340-574 33-247 (294)
145 PF06160 EzrA: Septation ring 82.9 98 0.0021 35.8 35.9 189 246-441 75-268 (560)
146 KOG0249 LAR-interacting protei 82.4 62 0.0013 39.2 17.1 82 332-418 103-184 (916)
147 PRK10884 SH3 domain-containing 82.2 14 0.00031 37.6 10.8 25 338-362 90-114 (206)
148 PF10481 CENP-F_N: Cenp-F N-te 81.8 52 0.0011 35.7 14.9 99 349-489 40-138 (307)
149 PF04156 IncA: IncA protein; 81.3 47 0.001 32.2 13.6 10 310-319 82-91 (191)
150 KOG0964 Structural maintenance 81.1 1.6E+02 0.0035 37.0 32.5 133 279-418 228-370 (1200)
151 TIGR02680 conserved hypothetic 81.1 1.7E+02 0.0038 37.4 29.6 30 99-128 424-453 (1353)
152 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.8 50 0.0011 31.0 14.7 21 385-405 40-60 (132)
153 PF14992 TMCO5: TMCO5 family 80.0 94 0.002 33.6 16.5 25 478-509 113-137 (280)
154 TIGR01010 BexC_CtrB_KpsE polys 80.0 53 0.0011 35.1 14.7 138 251-403 168-305 (362)
155 COG4942 Membrane-bound metallo 79.7 1.2E+02 0.0026 34.6 24.9 70 316-385 38-110 (420)
156 PF05335 DUF745: Protein of un 79.6 75 0.0016 32.3 15.6 113 318-448 62-174 (188)
157 PF13851 GAS: Growth-arrest sp 79.6 74 0.0016 32.2 18.1 53 306-358 27-79 (201)
158 PF08614 ATG16: Autophagy prot 79.3 14 0.0003 36.7 9.4 108 287-412 73-180 (194)
159 KOG1029 Endocytic adaptor prot 78.9 1.7E+02 0.0037 36.0 29.2 92 334-432 444-535 (1118)
160 smart00787 Spc7 Spc7 kinetocho 78.9 52 0.0011 35.6 14.2 58 357-414 206-263 (312)
161 PF00769 ERM: Ezrin/radixin/mo 78.8 71 0.0015 33.3 14.7 110 375-491 4-113 (246)
162 PF05266 DUF724: Protein of un 78.6 43 0.00093 33.9 12.7 110 286-396 77-186 (190)
163 PRK10884 SH3 domain-containing 78.6 22 0.00047 36.4 10.7 38 367-404 130-167 (206)
164 PRK10476 multidrug resistance 78.3 81 0.0017 33.4 15.3 34 407-441 135-168 (346)
165 COG4942 Membrane-bound metallo 78.0 1.3E+02 0.0029 34.2 24.6 9 602-610 330-338 (420)
166 KOG0962 DNA repair protein RAD 77.4 2.3E+02 0.0049 36.6 30.1 128 143-295 821-955 (1294)
167 PF04156 IncA: IncA protein; 77.4 36 0.00079 33.0 11.5 45 373-417 106-150 (191)
168 KOG0239 Kinesin (KAR3 subfamil 76.8 1.7E+02 0.0038 35.0 20.6 188 427-626 177-396 (670)
169 TIGR01010 BexC_CtrB_KpsE polys 76.5 48 0.001 35.4 13.1 91 468-575 215-305 (362)
170 TIGR01000 bacteriocin_acc bact 76.1 1.3E+02 0.0029 33.3 21.1 82 504-585 238-328 (457)
171 PF13747 DUF4164: Domain of un 76.1 28 0.00062 31.2 9.5 44 372-415 35-78 (89)
172 TIGR03007 pepcterm_ChnLen poly 75.0 1.4E+02 0.0031 33.1 21.8 39 408-446 258-296 (498)
173 PF12325 TMF_TATA_bd: TATA ele 74.4 70 0.0015 30.4 12.1 99 458-571 21-119 (120)
174 PRK11519 tyrosine kinase; Prov 74.1 1.9E+02 0.004 34.4 18.1 36 371-406 262-297 (719)
175 KOG0804 Cytoplasmic Zn-finger 73.9 25 0.00055 40.1 10.5 25 499-523 365-389 (493)
176 PF14257 DUF4349: Domain of un 73.5 17 0.00037 37.2 8.6 70 499-577 129-198 (262)
177 PF05483 SCP-1: Synaptonemal c 72.9 2.3E+02 0.0049 34.5 37.1 194 208-411 113-331 (786)
178 PF15619 Lebercilin: Ciliary p 72.2 1.2E+02 0.0025 30.9 22.1 173 341-557 12-187 (194)
179 KOG4643 Uncharacterized coiled 72.2 2.8E+02 0.006 35.2 33.3 64 229-292 181-247 (1195)
180 PF08317 Spc7: Spc7 kinetochor 71.9 1.5E+02 0.0032 31.9 21.8 30 150-179 70-99 (325)
181 PF01496 V_ATPase_I: V-type AT 71.8 35 0.00075 40.4 11.6 41 597-637 334-379 (759)
182 PF09755 DUF2046: Uncharacteri 71.7 1.6E+02 0.0035 32.3 24.5 199 308-591 22-226 (310)
183 PRK09841 cryptic autophosphory 71.7 1.3E+02 0.0029 35.6 16.3 37 370-406 261-297 (726)
184 TIGR00998 8a0101 efflux pump m 71.6 1.3E+02 0.0029 31.2 15.5 38 378-418 103-140 (334)
185 KOG1029 Endocytic adaptor prot 71.3 2.6E+02 0.0057 34.6 24.0 133 426-572 452-598 (1118)
186 KOG0978 E3 ubiquitin ligase in 71.2 2.4E+02 0.0053 34.1 43.5 81 499-579 528-625 (698)
187 PRK09841 cryptic autophosphory 71.1 1.8E+02 0.0039 34.6 17.1 139 239-403 253-397 (726)
188 KOG1853 LIS1-interacting prote 70.9 1.6E+02 0.0035 31.9 18.2 77 391-480 28-104 (333)
189 KOG1853 LIS1-interacting prote 70.6 74 0.0016 34.4 12.4 38 375-412 90-127 (333)
190 PF04912 Dynamitin: Dynamitin 70.4 1E+02 0.0022 33.8 14.0 20 115-134 33-52 (388)
191 PF12325 TMF_TATA_bd: TATA ele 70.3 1E+02 0.0022 29.3 13.2 69 368-447 22-90 (120)
192 PF08614 ATG16: Autophagy prot 69.7 43 0.00094 33.2 10.1 108 462-569 69-179 (194)
193 PF06120 Phage_HK97_TLTM: Tail 69.1 59 0.0013 35.3 11.7 81 333-413 87-171 (301)
194 PF15294 Leu_zip: Leucine zipp 68.9 78 0.0017 34.2 12.3 75 370-444 126-209 (278)
195 PRK11519 tyrosine kinase; Prov 68.6 1.4E+02 0.0031 35.3 15.6 61 332-403 337-397 (719)
196 PF07111 HCR: Alpha helical co 68.2 2.8E+02 0.0061 33.7 31.3 218 333-572 161-404 (739)
197 PF10146 zf-C4H2: Zinc finger- 67.9 1.1E+02 0.0023 32.0 12.9 63 515-577 38-103 (230)
198 PF05266 DUF724: Protein of un 67.2 1.2E+02 0.0025 30.9 12.6 79 334-412 96-174 (190)
199 TIGR01000 bacteriocin_acc bact 67.1 2.1E+02 0.0046 31.8 20.5 21 462-482 238-258 (457)
200 COG1842 PspA Phage shock prote 67.1 1.6E+02 0.0036 30.6 18.3 19 427-445 122-140 (225)
201 PF06810 Phage_GP20: Phage min 66.9 76 0.0016 31.1 11.0 65 335-399 14-81 (155)
202 PF07889 DUF1664: Protein of u 66.8 82 0.0018 30.3 10.9 84 337-437 39-122 (126)
203 COG4477 EzrA Negative regulato 66.8 2.7E+02 0.0059 32.9 27.2 273 248-624 276-554 (570)
204 PF05278 PEARLI-4: Arabidopsis 66.4 1.9E+02 0.0042 31.2 15.0 54 334-387 207-260 (269)
205 KOG0962 DNA repair protein RAD 66.1 3.9E+02 0.0085 34.6 37.6 34 489-522 532-565 (1294)
206 PF10168 Nup88: Nuclear pore c 65.4 1.7E+02 0.0037 35.2 15.5 116 207-326 538-656 (717)
207 PF08826 DMPK_coil: DMPK coile 65.1 32 0.00069 29.3 7.0 46 345-390 15-60 (61)
208 PF03962 Mnd1: Mnd1 family; I 64.6 65 0.0014 32.4 10.3 89 332-438 60-148 (188)
209 PF01920 Prefoldin_2: Prefoldi 64.0 98 0.0021 26.9 10.4 67 499-565 9-100 (106)
210 KOG0804 Cytoplasmic Zn-finger 63.5 1.3E+02 0.0028 34.8 13.2 21 108-128 87-107 (493)
211 TIGR02338 gimC_beta prefoldin, 63.5 97 0.0021 28.2 10.4 39 529-567 69-107 (110)
212 PF08647 BRE1: BRE1 E3 ubiquit 63.3 38 0.00082 30.5 7.6 59 229-287 7-65 (96)
213 smart00338 BRLZ basic region l 63.1 43 0.00094 27.6 7.4 49 516-564 15-63 (65)
214 COG3096 MukB Uncharacterized p 62.8 3.8E+02 0.0083 33.3 26.5 146 332-481 834-998 (1480)
215 cd00632 Prefoldin_beta Prefold 61.8 1.1E+02 0.0024 27.5 10.4 38 529-566 65-102 (105)
216 PF15456 Uds1: Up-regulated Du 61.7 1.2E+02 0.0026 29.0 10.9 74 332-405 20-117 (124)
217 PF05546 She9_MDM33: She9 / Md 61.6 2.1E+02 0.0046 29.9 14.5 60 368-427 31-94 (207)
218 KOG1899 LAR transmembrane tyro 61.4 3.7E+02 0.008 32.6 21.3 63 334-396 104-166 (861)
219 TIGR02977 phageshock_pspA phag 60.6 2E+02 0.0043 29.2 14.7 43 529-571 101-143 (219)
220 TIGR02132 phaR_Bmeg polyhydrox 60.5 84 0.0018 32.2 10.1 91 322-412 60-150 (189)
221 COG3206 GumC Uncharacterized p 59.9 2.8E+02 0.0061 30.8 19.2 71 333-403 201-273 (458)
222 PF07106 TBPIP: Tat binding pr 59.5 59 0.0013 31.4 8.8 84 310-393 34-133 (169)
223 PF04111 APG6: Autophagy prote 59.4 2.6E+02 0.0057 30.2 14.5 33 543-575 101-133 (314)
224 COG2433 Uncharacterized conser 58.8 1.2E+02 0.0027 36.0 12.4 71 333-403 435-508 (652)
225 PF13870 DUF4201: Domain of un 58.6 1.8E+02 0.004 28.3 17.0 109 307-418 18-140 (177)
226 PF04102 SlyX: SlyX; InterPro 57.9 41 0.0009 28.6 6.5 47 529-575 6-52 (69)
227 PF04012 PspA_IM30: PspA/IM30 57.3 2.1E+02 0.0046 28.5 21.3 53 345-397 27-79 (221)
228 PF10212 TTKRSYEDQ: Predicted 56.9 3.9E+02 0.0084 31.5 19.0 25 467-491 420-444 (518)
229 COG1566 EmrA Multidrug resista 55.9 2.1E+02 0.0045 31.8 13.0 98 342-442 99-207 (352)
230 PRK03598 putative efflux pump 55.4 2.4E+02 0.0051 29.7 13.0 38 548-585 178-215 (331)
231 PF09730 BicD: Microtubule-ass 55.3 4.7E+02 0.01 31.9 35.5 18 499-516 370-387 (717)
232 PLN03229 acetyl-coenzyme A car 55.0 3.7E+02 0.008 33.0 15.6 62 338-437 646-707 (762)
233 PRK10869 recombination and rep 54.7 4E+02 0.0087 30.9 21.3 93 306-398 265-363 (553)
234 PF05546 She9_MDM33: She9 / Md 54.6 2.7E+02 0.0057 29.2 12.7 50 321-372 21-70 (207)
235 PRK00846 hypothetical protein; 54.3 75 0.0016 28.3 7.7 49 527-575 13-61 (77)
236 PF09728 Taxilin: Myosin-like 53.8 3.2E+02 0.007 29.6 30.5 62 461-523 245-306 (309)
237 TIGR02338 gimC_beta prefoldin, 53.7 1.4E+02 0.0031 27.2 9.7 76 427-521 26-107 (110)
238 KOG4360 Uncharacterized coiled 53.6 4.5E+02 0.0097 31.2 16.6 131 333-476 89-249 (596)
239 PRK00295 hypothetical protein; 53.2 60 0.0013 27.8 6.7 47 529-575 7-53 (68)
240 KOG0993 Rab5 GTPase effector R 53.1 84 0.0018 35.9 9.6 72 396-482 106-177 (542)
241 PF06818 Fez1: Fez1; InterPro 53.0 2.9E+02 0.0062 28.8 12.7 104 459-569 58-170 (202)
242 PF00170 bZIP_1: bZIP transcri 51.7 1E+02 0.0022 25.4 7.8 48 517-564 16-63 (64)
243 PRK00736 hypothetical protein; 51.3 77 0.0017 27.2 7.1 47 529-575 7-53 (68)
244 KOG4809 Rab6 GTPase-interactin 50.8 5.1E+02 0.011 31.0 26.2 49 388-439 429-477 (654)
245 KOG1655 Protein involved in va 50.7 3.2E+02 0.007 28.7 13.1 95 474-575 19-153 (218)
246 PTZ00464 SNF-7-like protein; P 50.5 1.2E+02 0.0027 31.2 9.7 73 477-559 21-93 (211)
247 PRK11085 magnesium/nickel/coba 50.1 41 0.00089 36.3 6.6 76 96-182 128-203 (316)
248 PF05010 TACC: Transforming ac 50.1 3.1E+02 0.0068 28.4 24.0 37 485-528 140-180 (207)
249 PF04111 APG6: Autophagy prote 49.8 1.7E+02 0.0037 31.6 11.1 70 338-407 61-137 (314)
250 PRK09343 prefoldin subunit bet 49.5 2.3E+02 0.0049 26.6 10.7 41 528-568 72-112 (121)
251 PF12329 TMF_DNA_bd: TATA elem 48.9 1.1E+02 0.0024 26.6 7.8 62 333-394 11-72 (74)
252 PF00435 Spectrin: Spectrin re 48.8 1.5E+02 0.0032 24.3 11.6 80 337-418 4-87 (105)
253 PRK10246 exonuclease subunit S 48.8 6.4E+02 0.014 31.6 32.6 19 426-444 778-796 (1047)
254 PRK04325 hypothetical protein; 48.4 76 0.0016 27.6 6.7 47 529-575 11-57 (74)
255 PF04728 LPP: Lipoprotein leuc 48.3 90 0.0019 26.5 6.8 33 364-396 19-51 (56)
256 PF09403 FadA: Adhesion protei 48.0 2.5E+02 0.0053 27.1 10.6 69 506-574 24-101 (126)
257 COG1382 GimC Prefoldin, chaper 48.0 99 0.0022 29.7 8.0 72 428-511 30-107 (119)
258 COG0497 RecN ATPase involved i 47.9 5.4E+02 0.012 30.5 24.8 39 260-298 157-195 (557)
259 PF04582 Reo_sigmaC: Reovirus 47.9 33 0.00071 37.7 5.4 105 264-386 32-136 (326)
260 PF15254 CCDC14: Coiled-coil d 47.4 6.5E+02 0.014 31.2 17.5 127 276-417 339-475 (861)
261 PF11471 Sugarporin_N: Maltopo 47.3 28 0.0006 29.4 3.8 29 373-401 29-57 (60)
262 PF02994 Transposase_22: L1 tr 46.9 27 0.0006 38.3 4.8 50 372-421 140-189 (370)
263 KOG4677 Golgi integral membran 46.4 5.5E+02 0.012 30.1 30.0 238 261-513 169-419 (554)
264 PF12795 MscS_porin: Mechanose 46.1 3.4E+02 0.0075 27.7 21.0 147 242-407 81-228 (240)
265 PF06548 Kinesin-related: Kine 46.1 5.4E+02 0.012 30.0 29.5 111 461-573 359-480 (488)
266 PF10234 Cluap1: Clusterin-ass 45.9 4.2E+02 0.009 28.6 13.2 117 222-356 123-240 (267)
267 PRK02793 phi X174 lysis protei 45.5 1.1E+02 0.0023 26.6 7.1 48 528-575 9-56 (72)
268 PF03915 AIP3: Actin interacti 44.9 3.4E+02 0.0074 30.9 12.8 55 449-516 213-267 (424)
269 PF03908 Sec20: Sec20; InterP 44.7 64 0.0014 28.5 5.9 82 536-642 7-88 (92)
270 PF09125 COX2-transmemb: Cytoc 44.2 26 0.00056 27.6 2.9 22 627-649 15-36 (38)
271 PF12777 MT: Microtubule-bindi 44.1 69 0.0015 34.5 7.2 29 148-176 8-36 (344)
272 PF06005 DUF904: Protein of un 43.9 1.1E+02 0.0023 26.8 6.9 45 529-573 6-50 (72)
273 PF15294 Leu_zip: Leucine zipp 43.8 4.6E+02 0.01 28.5 20.0 94 465-558 130-239 (278)
274 PRK09343 prefoldin subunit bet 43.8 2.8E+02 0.0061 26.0 10.6 77 427-522 30-112 (121)
275 KOG0992 Uncharacterized conser 43.1 6.4E+02 0.014 30.0 18.4 186 305-511 234-419 (613)
276 PF13514 AAA_27: AAA domain 43.1 7.7E+02 0.017 30.9 42.1 63 104-180 527-589 (1111)
277 PRK02119 hypothetical protein; 43.1 1E+02 0.0022 26.8 6.7 48 528-575 10-57 (73)
278 COG1842 PspA Phage shock prote 43.0 4.1E+02 0.009 27.7 15.7 63 332-394 83-145 (225)
279 PRK04406 hypothetical protein; 41.9 1.7E+02 0.0036 25.7 7.9 48 528-575 12-59 (75)
280 PF10146 zf-C4H2: Zinc finger- 41.8 4.4E+02 0.0095 27.7 13.5 45 368-412 59-103 (230)
281 PF09744 Jnk-SapK_ap_N: JNK_SA 41.8 2.3E+02 0.005 28.1 9.7 103 306-412 26-132 (158)
282 PF14197 Cep57_CLD_2: Centroso 41.7 2.2E+02 0.0048 24.7 8.5 28 333-360 4-31 (69)
283 COG1566 EmrA Multidrug resista 41.5 4.8E+02 0.01 29.0 13.1 53 353-414 89-141 (352)
284 TIGR00293 prefoldin, archaeal 41.4 1.1E+02 0.0024 27.9 7.2 44 530-573 82-125 (126)
285 PF12072 DUF3552: Domain of un 41.2 3.9E+02 0.0084 26.9 11.9 51 334-384 78-128 (201)
286 PF09728 Taxilin: Myosin-like 40.9 5E+02 0.011 28.1 27.8 75 333-414 21-95 (309)
287 PF10212 TTKRSYEDQ: Predicted 40.4 2.6E+02 0.0056 32.8 11.2 92 297-391 404-509 (518)
288 KOG0239 Kinesin (KAR3 subfamil 40.1 7.5E+02 0.016 29.9 15.5 24 341-364 175-198 (670)
289 COG4372 Uncharacterized protei 39.8 6.5E+02 0.014 29.1 24.2 145 276-420 46-195 (499)
290 PF05278 PEARLI-4: Arabidopsis 39.8 4.4E+02 0.0096 28.6 12.1 51 370-420 215-265 (269)
291 PF07544 Med9: RNA polymerase 39.2 70 0.0015 28.2 5.2 41 95-135 6-49 (83)
292 KOG3595 Dyneins, heavy chain [ 39.1 1E+03 0.022 31.1 27.1 105 459-570 919-1026(1395)
293 PRK12704 phosphodiesterase; Pr 38.8 3.4E+02 0.0075 31.4 11.9 6 493-498 255-260 (520)
294 PRK11020 hypothetical protein; 38.8 1.5E+02 0.0032 28.5 7.5 67 500-580 3-70 (118)
295 PF12329 TMF_DNA_bd: TATA elem 38.7 2.3E+02 0.005 24.7 8.2 24 335-358 34-57 (74)
296 PRK15396 murein lipoprotein; P 38.0 1.2E+02 0.0026 27.1 6.4 43 354-396 31-73 (78)
297 PF13514 AAA_27: AAA domain 37.9 9.2E+02 0.02 30.3 39.4 173 144-317 455-647 (1111)
298 PF04108 APG17: Autophagy prot 37.7 6.3E+02 0.014 28.3 28.3 89 268-358 116-216 (412)
299 PRK10476 multidrug resistance 37.7 5.3E+02 0.011 27.4 13.5 10 575-584 260-269 (346)
300 PF08826 DMPK_coil: DMPK coile 37.3 2.2E+02 0.0049 24.3 7.7 39 379-417 14-52 (61)
301 TIGR02231 conserved hypothetic 36.9 3.2E+02 0.0069 31.1 11.2 86 333-418 70-173 (525)
302 PF10267 Tmemb_cc2: Predicted 36.7 5.7E+02 0.012 29.1 12.9 17 426-443 259-275 (395)
303 PRK00409 recombination and DNA 36.4 3.5E+02 0.0076 32.9 12.0 70 371-446 515-584 (782)
304 PF10186 Atg14: UV radiation r 35.9 4.8E+02 0.01 26.4 15.9 46 369-414 63-108 (302)
305 PF05529 Bap31: B-cell recepto 35.0 2.7E+02 0.0059 27.4 9.2 63 339-401 123-186 (192)
306 PF05377 FlaC_arch: Flagella a 34.7 91 0.002 26.4 4.9 38 377-414 1-38 (55)
307 PF10779 XhlA: Haemolysin XhlA 34.5 1.9E+02 0.0041 24.6 7.0 46 338-383 3-48 (71)
308 KOG0980 Actin-binding protein 34.2 1.1E+03 0.023 29.9 27.9 52 462-520 468-519 (980)
309 PF10234 Cluap1: Clusterin-ass 34.0 1.5E+02 0.0033 31.8 7.7 48 350-397 171-218 (267)
310 COG2433 Uncharacterized conser 33.5 3E+02 0.0065 33.0 10.4 32 544-575 477-508 (652)
311 COG1382 GimC Prefoldin, chaper 33.5 3.2E+02 0.007 26.3 8.9 19 285-303 10-28 (119)
312 KOG4603 TBP-1 interacting prot 33.3 3.5E+02 0.0076 28.0 9.6 121 272-394 5-141 (201)
313 PF07106 TBPIP: Tat binding pr 33.3 2E+02 0.0042 27.9 7.7 57 333-389 78-136 (169)
314 KOG4324 Guanine nucleotide exc 33.0 2.5E+02 0.0054 32.4 9.4 163 384-562 59-236 (476)
315 PF04849 HAP1_N: HAP1 N-termin 32.9 7.1E+02 0.015 27.5 22.4 203 216-467 67-293 (306)
316 KOG1937 Uncharacterized conser 32.4 8.8E+02 0.019 28.5 19.5 45 529-573 384-428 (521)
317 PF01920 Prefoldin_2: Prefoldi 31.9 3.4E+02 0.0074 23.5 8.4 20 338-357 66-85 (106)
318 PF02050 FliJ: Flagellar FliJ 31.6 3.3E+02 0.0071 23.2 9.2 69 334-402 12-85 (123)
319 PF10186 Atg14: UV radiation r 31.3 5.7E+02 0.012 25.9 22.8 79 468-553 57-135 (302)
320 TIGR01069 mutS2 MutS2 family p 31.3 4.2E+02 0.0092 32.2 11.5 48 372-419 511-558 (771)
321 PF13166 AAA_13: AAA domain 30.9 9.1E+02 0.02 28.1 23.3 55 529-584 426-480 (712)
322 PF03310 Cauli_DNA-bind: Cauli 30.8 74 0.0016 30.7 4.3 81 107-189 6-101 (121)
323 PF06785 UPF0242: Uncharacteri 30.8 8E+02 0.017 27.8 12.4 44 371-414 129-172 (401)
324 PF05384 DegS: Sensor protein 30.0 5.7E+02 0.012 25.5 13.3 84 464-561 31-118 (159)
325 PRK10361 DNA recombination pro 29.9 9.5E+02 0.021 28.0 17.6 102 394-513 96-197 (475)
326 PF09789 DUF2353: Uncharacteri 29.9 8E+02 0.017 27.2 20.6 50 370-419 73-122 (319)
327 PF09177 Syntaxin-6_N: Syntaxi 29.8 3.9E+02 0.0084 23.8 8.5 62 405-477 33-94 (97)
328 PF08537 NBP1: Fungal Nap bind 29.7 2.8E+02 0.0062 30.7 8.9 44 333-376 174-217 (323)
329 PRK12704 phosphodiesterase; Pr 29.6 9.5E+02 0.021 28.0 16.6 12 521-532 182-193 (520)
330 KOG0964 Structural maintenance 29.0 1.4E+03 0.029 29.6 32.3 206 228-437 667-904 (1200)
331 PF04100 Vps53_N: Vps53-like, 28.9 8.5E+02 0.018 27.1 17.5 63 333-395 24-90 (383)
332 PF06810 Phage_GP20: Phage min 28.8 2.2E+02 0.0048 27.9 7.3 46 306-352 24-69 (155)
333 PF06428 Sec2p: GDP/GTP exchan 28.8 1.2E+02 0.0027 28.0 5.3 72 365-443 11-83 (100)
334 PF07439 DUF1515: Protein of u 28.7 2.4E+02 0.0052 27.0 7.1 50 336-385 10-63 (112)
335 PRK09973 putative outer membra 28.6 1.9E+02 0.0041 26.4 6.2 26 369-394 45-70 (85)
336 TIGR02231 conserved hypothetic 28.6 3.4E+02 0.0074 30.8 9.7 86 423-526 69-155 (525)
337 PF15254 CCDC14: Coiled-coil d 28.5 8.2E+02 0.018 30.4 12.9 146 368-555 393-543 (861)
338 PRK10698 phage shock protein P 28.4 6.7E+02 0.015 25.8 15.5 56 518-573 87-145 (222)
339 PF12795 MscS_porin: Mechanose 28.1 6.6E+02 0.014 25.7 19.6 57 499-559 154-210 (240)
340 PF03904 DUF334: Domain of unk 28.1 7.6E+02 0.017 26.4 11.9 30 527-556 82-112 (230)
341 PF11932 DUF3450: Protein of u 28.0 6.8E+02 0.015 25.8 14.0 11 427-437 86-96 (251)
342 PRK13729 conjugal transfer pil 27.8 1.9E+02 0.0041 33.5 7.5 48 338-385 73-120 (475)
343 PF00170 bZIP_1: bZIP transcri 27.8 99 0.0021 25.5 4.1 31 488-518 33-63 (64)
344 KOG3958 Putative dynamitin [Cy 27.7 6.8E+02 0.015 28.0 11.2 113 425-559 191-315 (371)
345 PF10498 IFT57: Intra-flagella 27.7 6E+02 0.013 28.3 11.1 44 373-416 263-306 (359)
346 KOG4643 Uncharacterized coiled 27.5 1.4E+03 0.031 29.4 36.5 34 529-562 525-558 (1195)
347 PF10158 LOH1CR12: Tumour supp 27.3 5.8E+02 0.012 24.7 10.5 79 501-584 48-130 (131)
348 PRK11578 macrolide transporter 26.9 2.5E+02 0.0055 30.0 8.0 23 429-451 103-125 (370)
349 PF06818 Fez1: Fez1; InterPro 26.7 4.5E+02 0.0098 27.4 9.3 76 307-386 15-90 (202)
350 PF13747 DUF4164: Domain of un 26.6 4.8E+02 0.01 23.5 10.2 74 499-573 5-78 (89)
351 PF13094 CENP-Q: CENP-Q, a CEN 26.5 2.2E+02 0.0048 27.3 6.8 50 370-419 35-84 (160)
352 PF05529 Bap31: B-cell recepto 26.3 4.2E+02 0.009 26.1 8.8 10 461-470 116-125 (192)
353 PF04977 DivIC: Septum formati 26.1 1.1E+02 0.0024 25.3 4.1 38 543-580 19-56 (80)
354 PF00846 Hanta_nucleocap: Hant 25.9 3E+02 0.0065 31.4 8.4 54 334-387 2-67 (428)
355 KOG3647 Predicted coiled-coil 25.5 4E+02 0.0086 29.3 8.9 59 275-333 106-164 (338)
356 KOG4403 Cell surface glycoprot 25.5 8E+02 0.017 28.8 11.6 31 430-460 352-382 (575)
357 PF11471 Sugarporin_N: Maltopo 25.4 86 0.0019 26.6 3.3 30 367-396 30-59 (60)
358 KOG1962 B-cell receptor-associ 25.0 6.4E+02 0.014 26.6 10.1 27 546-572 184-210 (216)
359 PRK00295 hypothetical protein; 25.0 3.6E+02 0.0077 23.2 7.0 29 540-568 25-53 (68)
360 PF13166 AAA_13: AAA domain 24.8 1.2E+03 0.025 27.3 18.4 24 25-50 17-40 (712)
361 PF02403 Seryl_tRNA_N: Seryl-t 24.6 5E+02 0.011 23.1 10.9 85 308-393 8-98 (108)
362 PF07544 Med9: RNA polymerase 24.6 4.9E+02 0.011 23.0 8.3 77 133-234 2-78 (83)
363 PF05739 SNARE: SNARE domain; 24.4 3.7E+02 0.008 21.4 8.7 56 350-405 6-61 (63)
364 KOG3850 Predicted membrane pro 24.4 1.1E+03 0.025 27.1 12.8 29 231-259 90-118 (455)
365 PF15188 CCDC-167: Coiled-coil 24.1 2.1E+02 0.0046 26.1 5.7 60 223-282 2-65 (85)
366 PF09177 Syntaxin-6_N: Syntaxi 24.0 5.2E+02 0.011 23.0 8.7 51 496-546 40-93 (97)
367 PRK15178 Vi polysaccharide exp 23.7 1.2E+03 0.025 27.0 13.4 78 310-387 250-332 (434)
368 PF10498 IFT57: Intra-flagella 23.5 9.3E+02 0.02 26.9 11.6 20 62-83 47-66 (359)
369 PF07111 HCR: Alpha helical co 23.5 1.5E+03 0.032 28.1 42.0 343 100-528 260-626 (739)
370 PRK03598 putative efflux pump 23.5 8.8E+02 0.019 25.5 15.2 25 306-330 78-102 (331)
371 PF10458 Val_tRNA-synt_C: Valy 23.5 4.4E+02 0.0096 22.1 7.3 27 333-359 3-29 (66)
372 PF13863 DUF4200: Domain of un 23.3 5.6E+02 0.012 23.2 12.5 62 370-438 47-108 (126)
373 PF10267 Tmemb_cc2: Predicted 23.3 1.1E+03 0.025 26.7 13.1 25 333-357 61-85 (395)
374 PF11802 CENP-K: Centromere-as 23.2 9.9E+02 0.022 26.0 11.4 89 467-571 30-119 (268)
375 PRK10636 putative ABC transpor 22.8 3.3E+02 0.0071 31.9 8.5 66 338-403 560-632 (638)
376 PF08647 BRE1: BRE1 E3 ubiquit 22.6 5.7E+02 0.012 23.0 9.6 43 378-420 26-68 (96)
377 PF15397 DUF4618: Domain of un 22.5 1E+03 0.022 25.8 19.7 113 276-388 47-168 (258)
378 PLN03188 kinesin-12 family pro 22.5 1.9E+03 0.041 29.0 16.3 69 332-411 1171-1239(1320)
379 PRK15136 multidrug efflux syst 22.3 1.1E+03 0.023 26.0 13.8 39 405-444 139-177 (390)
380 PF13863 DUF4200: Domain of un 22.1 6E+02 0.013 23.0 12.1 60 458-524 44-103 (126)
381 KOG0998 Synaptic vesicle prote 22.0 2E+02 0.0043 35.3 6.7 157 332-523 426-582 (847)
382 PRK03947 prefoldin subunit alp 21.9 6.6E+02 0.014 23.5 10.6 43 531-573 91-133 (140)
383 KOG2008 BTK-associated SH3-dom 21.9 1.2E+03 0.026 26.4 25.1 60 548-608 197-263 (426)
384 KOG2991 Splicing regulator [RN 21.3 1.1E+03 0.024 25.9 21.2 116 370-522 178-305 (330)
385 PF06248 Zw10: Centromere/kine 20.9 1.3E+03 0.029 26.7 18.1 147 229-396 11-170 (593)
386 PF11932 DUF3450: Protein of u 20.8 9.3E+02 0.02 24.8 15.4 69 446-528 35-103 (251)
387 PF15290 Syntaphilin: Golgi-lo 20.6 5.9E+02 0.013 28.1 9.1 71 307-388 73-143 (305)
388 PF03904 DUF334: Domain of unk 20.5 9E+02 0.019 25.8 10.2 65 279-349 48-112 (230)
389 PRK15422 septal ring assembly 20.5 5E+02 0.011 23.6 7.2 67 427-514 6-72 (79)
390 PF07058 Myosin_HC-like: Myosi 20.4 1.2E+03 0.027 26.1 13.0 77 335-418 60-157 (351)
391 PF13870 DUF4201: Domain of un 20.4 8E+02 0.017 23.9 19.2 86 333-418 5-98 (177)
392 PF14197 Cep57_CLD_2: Centroso 20.4 2.5E+02 0.0054 24.4 5.2 29 384-412 34-62 (69)
393 PF14257 DUF4349: Domain of un 20.1 5.4E+02 0.012 26.5 8.6 80 309-393 105-186 (262)
394 PF00846 Hanta_nucleocap: Hant 20.0 2.4E+02 0.0051 32.2 6.2 67 377-447 3-71 (428)
No 1
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=100.00 E-value=1e-33 Score=275.70 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=184.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+.++++||+.+|.||++++ +
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~ 74 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H 74 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006170 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (658)
Q Consensus 447 saEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke 526 (658)
+++++++ ||++|+|+++||| ++|+++|.|||.+|++|. +|+++++++++++++|+++.++++++.+
T Consensus 75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
.| +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||.+-
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999763
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.96 E-value=1.7e-28 Score=243.15 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh-------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006170 341 EKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe-------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerel 413 (658)
+|+..++.+++.+..++..+..++.. +++++++|+|+|++|++++.++++|+..+..||..+++.++++.|.+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887777777766666654 48899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 006170 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (658)
Q Consensus 414 k~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~L 493 (658)
++|++|...+++|++.||.||++++ .+++.++. +|+++.+++.+++ +++.+|++|++.+|++|.
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~-------~~~ee~e~----k~~E~~rkl~~~E---~~Le~aEeR~e~~E~ki~-- 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAK-------RRAEEAER----KYEEVERKLKVLE---QELERAEERAEAAESKIK-- 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHH----HHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHhhhchhHH--
Confidence 9999999999999999999999988 99999999 9999999999999 999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 006170 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (658)
Q Consensus 494 se~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~kee 563 (658)
+|+++|..++++|++||++..+|+++++.| +|+++.|++++++.|.+|+.++|+|++.|...+.+
T Consensus 145 -----eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 145 -----ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc
Q 006170 564 NKLLVEKLQYS 574 (658)
Q Consensus 564 nK~L~ekLd~~ 574 (658)
|+.+..+||.+
T Consensus 220 ~~~~~~eld~~ 230 (237)
T PF00261_consen 220 YKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.21 E-value=2.4e-10 Score=107.71 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdE 408 (658)
.+.|+.+|++|+..||.+|+.++.+|..++..++.... ..-+|+|+|+.|++++.+|+.++..|..|+.++...+++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47899999999999999999999999999999998854 344899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006170 409 LSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (658)
Q Consensus 409 Lerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (658)
++|.++.|+.+....+.|++.++.++++++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888999999999988764
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.20 E-value=4.5e-10 Score=112.28 Aligned_cols=216 Identities=21% Similarity=0.316 Sum_probs=148.2
Q ss_pred hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 006170 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (658)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (658)
|++.++.+|-.+..|...+..+|+.....+. .. +.++.+|+.|++.+|.+|+.++..|..+..+++..+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~----------~a-E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAE----------KA-EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666777777766676677776666553333 22 789999999999999999999999888888887753
Q ss_pred H--------------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHH
Q 006170 369 E--------------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (658)
Q Consensus 369 ~--------------EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QL 434 (658)
. .......+|..|+..+..|..++..|..|+.. ..+.+.++++.=...++|++.+|.++
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E-------~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE-------VERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 3 22334444444555555555555555555544 44444444443222356778888888
Q ss_pred HHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 006170 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (658)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL 514 (658)
++.+.+|.........-.....-.+....+.+.-|.+|..++..||.|++.||.+|..|-..+-.|+.+|.....+.+++
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777776665444332222222233456677788889999999999999999999988888888888888888888888
Q ss_pred HHHHHHHh
Q 006170 515 ESSLNRAN 522 (658)
Q Consensus 515 E~sl~kA~ 522 (658)
..-++.+.
T Consensus 224 ~~eld~~l 231 (237)
T PF00261_consen 224 QEELDQTL 231 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.11 E-value=6.1e-06 Score=95.04 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
++..++.++..++..++....++..+....+....++.++...++..+.....+++.+..+..++..+.....+++.+++
T Consensus 510 ~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555666666666666666666666666666
Q ss_pred hhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhH-----HHHHHHHhhhhhhhhhhhhhhhhh
Q 006170 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-----ETLIEDLKSKVSKAESKTESVEEQ 489 (658)
Q Consensus 415 ~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdm-----e~vIEdLk~Kl~rAE~RaE~aEsK 489 (658)
.|+.. ..-...+..++..+.+.+..+...+..-+....+-..+-..+..+ ..-.+.+..++.+++..++.++.+
T Consensus 590 ~le~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 590 SLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 101222223333333222222222222111112111222233333 234556667777777777777777
Q ss_pred hhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 490 c~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
+. ++..++..+..++..++..++.....+..+
T Consensus 669 l~-------~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 669 LD-------ELREERDDLQAEIGAVENELEELEELRERR 700 (880)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777788888877777777665444443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.08 E-value=1.7e-05 Score=91.44 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.5
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EA 272 (658)
.++.++...+...+++..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666767666667777777777777777776666655554333
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.92 E-value=2.4e-06 Score=102.27 Aligned_cols=256 Identities=21% Similarity=0.293 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
++..+++....++..+..+...........+..+.++...+.++..++.++..-+.+.+....++..+.+...+++..+.
T Consensus 766 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~ 845 (1163)
T COG1196 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333344444444444444444444444444444444444444444444444
Q ss_pred hhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhH-------HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 006170 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS-------QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (658)
Q Consensus 415 ~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas-------~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aE 487 (658)
.|+.. +..++.++.+...++.++..-.... ..+...+-..+.....=+.+++.+..+++.++..++
T Consensus 846 ~l~~~-------~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 918 (1163)
T COG1196 846 ELEEE-------LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918 (1163)
T ss_pred HHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44442 3333333333333333222111111 111111111222222333333344455555555555
Q ss_pred hhhhhcccchhhHHHHHH---------HHHhhHHHHHHH---HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006170 488 EQCIVLSEDNFELKNKQS---------FMRDKIKILESS---LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 555 (658)
Q Consensus 488 sKc~~Lse~N~ELeEEL~---------~l~s~lksLE~s---l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLed 555 (658)
.+|..+......+.+++. .++.+++.++.. +...|-+-..-.++...|.++...-...|...+++|++
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~ 998 (1163)
T COG1196 919 AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLE 998 (1163)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555422222222222221 344555555555 22223223333677888888888999999999999999
Q ss_pred HHhHHHHhhhHH-HHHHhhcCCCCcceeccCCCCccccccccc
Q 006170 556 QVYSLTSENKLL-VEKLQYSGKSSSATMYNAGDTDDKELLINP 597 (658)
Q Consensus 556 QL~s~keenK~L-~ekLd~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (658)
.|.....+.+.. .+.++....+-+.....-|.||.-++.+..
T Consensus 999 ~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~ 1041 (1163)
T COG1196 999 VIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELELTE 1041 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCC
Confidence 998877766543 666665555555554444444444444433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.86 E-value=4.5e-06 Score=96.34 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHH
Q 006170 501 KNKQSFMRDKIKILESSLNRANIEK 525 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~kA~q~k 525 (658)
..++.-++.+++.|...++.+...+
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~ 988 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVN 988 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4556677777777777666555433
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.83 E-value=1.9e-05 Score=91.90 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=7.6
Q ss_pred hHHHHHHHHHhhHHHH
Q 006170 499 ELKNKQSFMRDKIKIL 514 (658)
Q Consensus 499 ELeEEL~~l~s~lksL 514 (658)
++..++..+..+++.+
T Consensus 955 ~l~~~l~~l~~~i~~l 970 (1164)
T TIGR02169 955 DVQAELQRVEEEIRAL 970 (1164)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444555454444443
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.81 E-value=5.6e-05 Score=88.05 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=26.6
Q ss_pred chHHHHHHHHHH---HHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHH
Q 006170 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (658)
Q Consensus 209 t~eqqR~iLrML---ekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~ 261 (658)
.+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++..
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~ 206 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE 206 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788777654 22222333334445555555555555555544444444433
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=0.00051 Score=83.73 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006170 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (658)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (658)
.++.+++.-+.++..++......+.+|.- .++ - ..-..++..-|.+.++.+...+...+.|+-+..+|.
T Consensus 598 ~el~~~e~~l~~~~~~l~~~~~eL~~~~~--~i~--~---~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (1311)
T TIGR00606 598 KELASLEQNKNHINNELESKEEQLSSYED--KLF--D---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--c---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 000 0 113455666777777777777776666665555544
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.65 E-value=0.00014 Score=84.20 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=31.3
Q ss_pred HhhHHHHHHHHHHHhHHHHhh--H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 508 RDKIKILESSLNRANIEKAAS--A-KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 508 ~s~lksLE~sl~kA~q~ke~t--l-Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
...++.|+..+......-++| + ..+..|.++...-..-|...++.|+..|.......
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~ 1023 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAI 1023 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665544445 1 12335666666666666666666666555444333
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=0.0079 Score=73.66 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=37.6
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006170 243 QLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (658)
Q Consensus 243 eLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (658)
++...+.....+...+++....+...+-++++-...+++..+.+...|+...-.+.
T Consensus 574 ~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666666677777777777777777777777777766666
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.007 Score=76.46 Aligned_cols=347 Identities=20% Similarity=0.211 Sum_probs=170.3
Q ss_pred HHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHh
Q 006170 215 HILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQ 294 (658)
Q Consensus 215 ~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~q 294 (658)
..-.++.|.-..--.++.++...+.-...+.........+++-+|+........+.+.+--+.- ++.+..||....
T Consensus 947 ~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~----l~k~~~kle~~l 1022 (1930)
T KOG0161|consen 947 ELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKS----LNKAKAKLEQQL 1022 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3334444444444444444444444444444455555555555555555555544444333222 234455555555
Q ss_pred hhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------
Q 006170 295 FNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------- 367 (658)
Q Consensus 295 f~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------- 367 (658)
-+|.+...+|...+-.++...-.|+ ..+ +.. -+.+..+..+...|+++++.-...+.+.+.+++.-
T Consensus 1023 ~~le~~le~e~~~r~e~Ek~~rkle---~el-~~~---~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l 1095 (1930)
T KOG0161|consen 1023 DDLEVTLEREKRIRMELEKAKRKLE---GEL-KDL---QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQL 1095 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666655555543332222 112 111 12223355556666666666666666666665553
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC------------------cchhhhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS------------------NTKKVGI 429 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~------------------deEK~~~ 429 (658)
+..|..+.++|.+|+++++.-....+-++-+...++..-.+++.++...-+...+ -++..-.
T Consensus 1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~ 1175 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLD 1175 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355555666666666655555545555555555555555555444433221100 0222333
Q ss_pred HHHHHHHHHHHHHHhHhhhHhHH---HHH---hhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHH
Q 006170 430 LENQLRDLEIQLQQAKVSSEASQ---EQQ---SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK 503 (658)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~---eqQ---~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEE 503 (658)
.|.++...+ -.|+..+++-.. .-| .++--.=+++..-+.+|...+.....+-..+|.+|..+...+.+|...
T Consensus 1176 ~e~~~~~lr--~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k 1253 (1930)
T KOG0161|consen 1176 HEAQIEELR--KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLK 1253 (1930)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Confidence 333443333 122222222111 100 001112334445555666666666666667777776444444455555
Q ss_pred HHHHHhhHHHHHHHHHHHhHHH---HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 504 QSFMRDKIKILESSLNRANIEK---AASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 504 L~~l~s~lksLE~sl~kA~q~k---e~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
+.-+..-+.+|=.+..+-..+- ...+.+++.-..-+-+....+..+++.++.|+.....+.-.++..+.+.
T Consensus 1254 ~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l 1327 (1930)
T KOG0161|consen 1254 LDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQL 1327 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444333322222222211 2226666666666777777777888888888887777777776666654
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.41 E-value=0.0014 Score=82.50 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHH
Q 006170 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (658)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l 507 (658)
..|++||+-.+.++.+...-.++-...-..+--.|+.+..-|.||..+++.-+....-+|.+-. +|..||..+
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~-------dL~~ele~l 1137 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRR-------DLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4444444444444444444433333322223334555555555555565555555455555555 666666666
Q ss_pred HhhHHHH-HHHHHHHh--H-HHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 508 RDKIKIL-ESSLNRAN--I-EKAAS-------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 508 ~s~lksL-E~sl~kA~--q-~ke~t-------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
...|... .....+.. . ++.++ -++.......+.++-.+++..+..|..|+-.++.....+
T Consensus 1138 ~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1138 KEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544 11111111 1 11111 334445567778888888889999998888877655544
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.35 E-value=0.0023 Score=77.42 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=34.9
Q ss_pred hhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 479 AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
.+.+....+.++-.|-..|+.--+|...+..++..|....+...+.+...
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777778888888777777777777777766666555554443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=98.34 E-value=0.014 Score=67.64 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 006170 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (658)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~L 493 (658)
|.+......-+.+++.++.....|.+..+.++.-|
T Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444455555555666666666666666644
No 18
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.27 E-value=0.0016 Score=76.51 Aligned_cols=277 Identities=23% Similarity=0.286 Sum_probs=172.4
Q ss_pred ccccccchhHHHHHHHhHHHHHhh----------hhHHHHHhhc--CChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 006170 297 LNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLES--TKNSEVL-TMKEKVKSLEEQLKESEIRLQNANAC 363 (658)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~----------k~~~lekl~~--s~esEv~-sLqkKvksLE~qLdes~eQL~~A~ak 363 (658)
|.-+..-|-+|+..+.+..|.|+. |=.+|+++.- ..-.|+. -+..+...|+++|.........|.+-
T Consensus 219 l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 219 LPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555553 1223332221 1223443 36678888899998888888877766
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCc----chhhhhHH---H
Q 006170 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSN----TKKVGILE---N 432 (658)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr----s~~d----eEK~~~LE---~ 432 (658)
-+..-.++++..--|+.+--+-+=||+|+++-...++-+.+-++|++-.+..|+.- |+.. .--+..|| .
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 66677899999999999999999999999999999999999999999998888642 2211 12222333 3
Q ss_pred HHHHHHHHHHH----hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh----------hhhhhhhhhhcccchh
Q 006170 433 QLRDLEIQLQQ----AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK----------TESVEEQCIVLSEDNF 498 (658)
Q Consensus 433 QLKEa~~QLqh----A~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~R----------aE~aEsKc~~Lse~N~ 498 (658)
.||++=..|.- ++..---.+..-.+|.+++.-+..+-|-|+.++.-||.- |=.||.=..-||+.|+
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknl 458 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNL 458 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhcc
Confidence 35544333321 111111111112334444444444444444444444432 2367777889999999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHH-------HHHHHHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMV-------MQLATQRELIQ 554 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV-------~KL~~ErdrLe 554 (658)
+|++-++-++.-+.+||+-.+--.|--+.- .|++..|...+..+| .|.-.-+..|+
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999987554333222211 567777766666544 34444456677
Q ss_pred HHHhHHHHhhhHHHHHHhh
Q 006170 555 KQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 555 dQL~s~keenK~L~ekLd~ 573 (658)
+||--+++.+-...++.++
T Consensus 539 dqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 539 DQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHhhhhhhHHHhcC
Confidence 7777777777666666553
No 19
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.13 E-value=0.0068 Score=75.43 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 006170 206 KMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW 266 (658)
Q Consensus 206 ~mqt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~ 266 (658)
=|.+++++|.++-=.=+-=.+--.-.++|......-.++...+...+.....|+..+...-
T Consensus 274 ~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 274 YMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888998888764432222334445555556666666666666666666666666555543
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.12 E-value=0.031 Score=70.35 Aligned_cols=293 Identities=19% Similarity=0.230 Sum_probs=179.2
Q ss_pred hhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhH
Q 006170 227 ELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE 306 (658)
Q Consensus 227 EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse 306 (658)
..-|++.+...+.-...++..| ..++....-.-+|+=-..|.++.+++.-..+-.|-+.+|..+.-..++=..
T Consensus 656 ~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~ 728 (1822)
T KOG4674|consen 656 LKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHT 728 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333 345556666778888888999999999999999999999888877777778
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 006170 307 LKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLEEQLKESEIR-------------------- 356 (658)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~----------esEv~sLqkKvksLE~qLdes~eQ-------------------- 356 (658)
+.+-|-.|-+.++.-+..+..|.+.+ -.|+..|......|--.++..+.+
T Consensus 729 ~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~ 808 (1822)
T KOG4674|consen 729 LSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIK 808 (1822)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777777766651 123333333333333223222222
Q ss_pred -----HHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHH
Q 006170 357 -----LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILE 431 (658)
Q Consensus 357 -----L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE 431 (658)
|+.++.++ ++++..+.+.+..+.-.+..|..+..+.......+-..+......+..|+. ++..|+
T Consensus 809 eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~eL~ 878 (1822)
T KOG4674|consen 809 ELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 22222221 334444445555555666666666666666666666666666666666666 477788
Q ss_pred HHHHHHHHHHHH--hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHh
Q 006170 432 NQLRDLEIQLQQ--AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD 509 (658)
Q Consensus 432 ~QLKEa~~QLqh--A~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s 509 (658)
++|+..+.|... ++++.++..- +-+++...+-=+++|+.+|-.|... +- .|..
T Consensus 879 k~l~~~~~~~~~l~~~~~~~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s~-------i~--------------~yqe 933 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDSKSSNEDATI----LEDTLRKELEEITDLKEELTDALSQ-------IR--------------EYQE 933 (1822)
T ss_pred HHHHHhHHHHhhccccchhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHH-------HH--------------HHHH
Confidence 888877766543 3344555544 4666666677777777776644432 33 5555
Q ss_pred hHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 510 KIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 510 ~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
-..+.+.++..-+.+=+.|.++++.|.+--..=++.|..++-.|+.++..+.
T Consensus 934 ~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~ 985 (1822)
T KOG4674|consen 934 EYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLR 985 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666555555555555555555544443
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.10 E-value=0.006 Score=66.97 Aligned_cols=105 Identities=10% Similarity=0.168 Sum_probs=64.0
Q ss_pred chhhhhHHHHHHHHHHHHHHhHhhhHhH---HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 006170 424 TKKVGILENQLRDLEIQLQQAKVSSEAS---QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (658)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas---~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (658)
..++..|+.++.+.+.|+......-... .++.......+......+...++.+.....+...++.++.-|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 3455555555555555555444433322 2222223445555555666666777667677777777777777777788
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 501 KNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
+++|..+..+++.+.........++..+
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887776666665554443
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.97 E-value=0.13 Score=64.95 Aligned_cols=338 Identities=20% Similarity=0.231 Sum_probs=166.0
Q ss_pred HHHHHHHh-----------hhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 006170 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (658)
Q Consensus 217 LrMLekSl-----------A~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (658)
|.||++.| +|-.+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 66777665 566678888888888888888888888877777776655432 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHH
Q 006170 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKE 352 (658)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLde 352 (658)
.+-|...-..++..+-.+|+..+-...-+++.+.++++-++.|. .+|.++... ..+++.+++ ..+..++..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~---~el~~lk~klq~~~~~~r~l~---~~~~~~l~~ 841 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELE---RELQKLKKKLQEKSSDLRELT---NSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---hhhhhHHHH
Confidence 12222333344444445555555555666777777776666665 333333322 122222221 222223333
Q ss_pred HHHHHHHhHh-------hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHhhhhHHHHHHhhhhhcCCCCc
Q 006170 353 SEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK--VTQLTDTNLELSEEINFLKGNNDSN 423 (658)
Q Consensus 353 s~eQL~~A~a-------klEesE~EVaaLerrIelLKEel~rAEsRa~tAesK--le~LSeTNdELerelk~Lesrs~~d 423 (658)
+.-++..... .+...+..++.|+..+..|+..|.-.+.|..+--++ .+.++.-.+.+..+
T Consensus 842 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~----------- 910 (1822)
T KOG4674|consen 842 AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKE----------- 910 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHH-----------
Confidence 3322222111 111123334444444444444444444444443333 22222222222221
Q ss_pred chhhhhHHHHHHHHHHHHHHhH---hhhHhHHHHHhhhHHHHH-hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcc-----
Q 006170 424 TKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIW-DMETLIEDLKSKVSKAESKTESVEEQCIVLS----- 494 (658)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkyseis-dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Ls----- 494 (658)
.+++..|..+|+-+..+..+=+ .+.+.+-++-.-.|++.. ..++=|+.+..++--.|.|.-..+..|.-|.
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344444455554443333222 223333222222233222 2223344444444433433333333333332
Q ss_pred ------cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHH---------HHHHHHHHHHHH
Q 006170 495 ------EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLM---------MEMVMQLATQRE 551 (658)
Q Consensus 495 ------e~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Ra--------k~a---------E~lV~KL~~Erd 551 (658)
..++.+..+++.+++.++++.....+|+.....+=.++..-+ ++- ...+.+|..+..
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~ 1070 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFA 1070 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688999999999999999999999887776632322221 111 123445555556
Q ss_pred HHHHHHhHHHHhhhHHHHHHhhc
Q 006170 552 LIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 552 rLedQL~s~keenK~L~ekLd~~ 574 (658)
...+++..++........-|++.
T Consensus 1071 ~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1071 KCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred HHHHHHHHHHhhHHHHHhHHhhc
Confidence 66666666666666665555544
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.94 E-value=0.014 Score=70.23 Aligned_cols=255 Identities=20% Similarity=0.168 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhH
Q 006170 257 RMEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSE 335 (658)
Q Consensus 257 ~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esE 335 (658)
..|+.|+.|-+.++-.+ -.++-|+|.-++-+.+|..+..=|+-... ++ +--++| .++
T Consensus 1493 si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~---di-----~ra~~L--------------~s~ 1550 (1758)
T KOG0994|consen 1493 SIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKG---DI-----ARAENL--------------QSE 1550 (1758)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh---hH-----HHHHHH--------------HHH
Confidence 34555555555554433 23555666666666666655544432111 00 000111 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~ 415 (658)
+..-.++...+..+.+...+.|+.|....-.++.-|..-.+-|++..+.|.+++++...|+.+..-++++..+|.+.+..
T Consensus 1551 A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1551 AERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888888888888887777777778888888899999999999999999999999999999999998888
Q ss_pred hhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhccc
Q 006170 416 LKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE 495 (658)
Q Consensus 416 Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse 495 (658)
|+........-+..-|+-.--++.+.+.|+.-.+.-+. .|+.+. .++++--.-..-|..|||.
T Consensus 1631 lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~----~~~~~~---~l~~~r~~g~~~ar~rAe~---------- 1693 (1758)
T KOG0994|consen 1631 LKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK----YYELVD---RLLEKRMEGSQAARERAEQ---------- 1693 (1758)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHhhcchhHHHHHHH----------
Confidence 88765433333333333333333222222222221111 333332 2233111222233333332
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006170 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 565 (658)
Q Consensus 496 ~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK 565 (658)
|+.+.+.| -...++|..-+||++.-+.--++-+.-.+.++.+|+..+-++....+
T Consensus 1694 -----------L~~eA~~L----l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 -----------LRTEAEKL----LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred -----------HHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22222222 23334555556666666666666666667777777777766654433
No 24
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.94 E-value=0.00062 Score=64.71 Aligned_cols=139 Identities=27% Similarity=0.289 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhh
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (658)
++-|+-+.+.|..|+..+++++..+...+.+.+.++..|.. |+..||.+|..+..+|..++..++.+..
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~---- 70 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEK---- 70 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Confidence 56788899999999999999999999999999999999987 5888999999888888888877777755
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006170 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (658)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak 537 (658)
.... ++++..++. -|++||.-...+|+....+ +.++..++.
T Consensus 71 ~~~~---------------------~E~l~rriq-------~LEeele~ae~~L~e~~ek-----------l~e~d~~ae 111 (143)
T PF12718_consen 71 RKSN---------------------AEQLNRRIQ-------LLEEELEEAEKKLKETTEK-----------LREADVKAE 111 (143)
T ss_pred HHHh---------------------HHHHHhhHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhH
Confidence 1111 012222233 4555555555555433222 566778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 006170 538 LMMEMVMQLATQRELIQKQVYSLTSENKL 566 (658)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (658)
-++|-|..|..+++.++..+-.+..+|+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888875
No 25
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.92 E-value=0.013 Score=68.66 Aligned_cols=304 Identities=17% Similarity=0.182 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhH---------HhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 006170 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQI---------VQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (658)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~---------~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (658)
+.+++.--|.+.|+|...=|+..-..+..++=- ++.+=+-+-+-+.-++.-.--.+++|.+.++.+--|.-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456667778888888888777665555554421 11111222222222222222233333333333333332
Q ss_pred C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH----HHHHHHHHh
Q 006170 331 T---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES----AEEKVTQLT 403 (658)
Q Consensus 331 s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t----AesKle~LS 403 (658)
+ .++|...||.-+..++.++++.+..|.+.++.++.-+.++++-.+.|.-.=+++-..-..+.. -.+|++++.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~ 193 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEAN 193 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHH
Confidence 2 466777777777777777777777777777777766666666666665555555444333332 223444444
Q ss_pred hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHH---HHHhHHHHHHHHhhhhhhhh
Q 006170 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS---AIWDMETLIEDLKSKVSKAE 480 (658)
Q Consensus 404 eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys---eisdme~vIEdLk~Kl~rAE 480 (658)
.-|..+++.++-++......++|. ++=.+ .||-..-+-.-..|.+--+. .++---.+|+++..++.
T Consensus 194 ~en~~le~k~~k~~e~~~~nD~~s-le~~~-------~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq--- 262 (1265)
T KOG0976|consen 194 REKKALEEKLEKFKEDLIEKDQKS-LELHK-------DQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQ--- 262 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-HHHHH-------HHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHH---
Confidence 444444455555554433222221 11011 11111111111111111111 11111134443333332
Q ss_pred hhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006170 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 481 ~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (658)
.-+...|.|-.-|--.|.-|..||+...-.++.+..-|+...+---...-+++.-+++.+--+++|..+.-+|.-.|.-.
T Consensus 263 ~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 263 ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555555556667788889998888888888888877776666677777777777777777777777777777777
Q ss_pred HHhhhHHHHHHhhc
Q 006170 561 TSENKLLVEKLQYS 574 (658)
Q Consensus 561 keenK~L~ekLd~~ 574 (658)
+.+-+.+.+++...
T Consensus 343 rrk~egfddk~~eL 356 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNEL 356 (1265)
T ss_pred HHhhcchhHHHHHH
Confidence 77777766666654
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.90 E-value=0.077 Score=59.70 Aligned_cols=330 Identities=18% Similarity=0.222 Sum_probs=161.3
Q ss_pred hhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHHHHhhhhHHHHhhhhHHhhhcccccc
Q 006170 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-----SAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (658)
Q Consensus 228 ldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN-----a~EvL~g~skel~gkLq~~qf~L~as~~ 302 (658)
.+.-+.|...+.+.++|+.+|..+..+...-.+.++..--|+=+.+. ++...+-.+.....+....-..|...-.
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~ 137 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQ 137 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999998888777777777666556554432 2222222233333333333333332221
Q ss_pred chhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------------
Q 006170 303 RESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE------------- 369 (658)
Q Consensus 303 REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~------------- 369 (658)
.=.-++.-+.++. ..|+.++.+.... .+-...-.+++..|-.++...++-+.++......++.
T Consensus 138 EL~~lr~e~~~~~---~~k~~A~~~aeea-~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~ 213 (522)
T PF05701_consen 138 ELEKLRQELASAL---DAKNAALKQAEEA-VSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA 213 (522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 2345555555444 3344445567777777777777777666544333321
Q ss_pred -----HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----cchhhhhHHHHHHHHHHH
Q 006170 370 -----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQ 440 (658)
Q Consensus 370 -----EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~----deEK~~~LE~QLKEa~~Q 440 (658)
++..-+..++.|+.++ +.+...+.|+...+.-...|..+++.....-.. ...+...+...|.-....
T Consensus 214 ~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence 2222333333333333 233333444444444444444444433331000 011222233334444444
Q ss_pred HHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006170 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (658)
Q Consensus 441 LqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~k 520 (658)
|..++.........-+.+...+..+..=++..|..+.+...|...+...+. .|+.||.-+++.+........+
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~-------~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS-------SLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHHHhhhcc
Confidence 444444444433322233444444444445555555555666666666666 8888888888888777666555
Q ss_pred HhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 521 ANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 521 A~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
+...-... +.++-.-+..+..=+.++..+++.....|.+...++.....+..
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221111 23333334444444555555555555555555555555444444
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=97.88 E-value=0.1 Score=60.61 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=6.0
Q ss_pred HHHHhhhHHHHHHhhc
Q 006170 559 SLTSENKLLVEKLQYS 574 (658)
Q Consensus 559 s~keenK~L~ekLd~~ 574 (658)
.+..+...+...++..
T Consensus 677 ~l~~~~~~l~~~i~~l 692 (880)
T PRK03918 677 GLRAELEELEKRREEI 692 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 28
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.85 E-value=0.0034 Score=63.19 Aligned_cols=184 Identities=19% Similarity=0.297 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
+.+|.+|..++..||.+++.+++.+..|..++++.+. .+..|+++.+.+++.+...+..+..|-.--+.+-.-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766522 333455555555555444444333332222222222
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhH---hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006170 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (658)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~R 482 (658)
-++--+.|-++++.=-..++|++.=|.++++...++.+-. -+...+.++-+-+.++- ...|..|-.|+--|++|
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~---e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY---EEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHhhhhhh
Confidence 2333344444444322235566666666665554444432 22233333111112222 23444444788899999
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHH
Q 006170 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (658)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~ 519 (658)
|+.+|-.+.-|-.+=-+|+..+.....+-.++..-|+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999988884444444444444444444333333333
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.85 E-value=0.1 Score=59.52 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcch----hhhhHHHHHHHHHHHHHHhH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAK 445 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deE----K~~~LE~QLKEa~~QLqhA~ 445 (658)
+.....-.+..|++++-.++++++.+..+...+.+-- +.+...++|.+++-. -+..|-.||.++..+|.+++
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555567788888888888888887776654432 222222333222211 13445555666555555444
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 006170 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (658)
Q Consensus 446 asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~Ra 483 (658)
+ .-.++++... ..+.....-|++|+..+.+++...
T Consensus 353 ~--q~~qEk~~l~-~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 353 S--QWAQEKQALQ-HSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred H--HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 1222223211 223333345677777777776544
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.83 E-value=0.14 Score=60.55 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
+.+..-||--+-.|--.|++...++....+.++..+++.+.+...|.++++.++..+.++.....|++-|..+.-+=.+.
T Consensus 335 e~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~q 414 (775)
T PF10174_consen 335 EQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQ 414 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555566666666666666666666666677777777777666666666666666555444444
Q ss_pred hhhhhcC
Q 006170 413 INFLKGN 419 (658)
Q Consensus 413 lk~Lesr 419 (658)
+..++.|
T Consensus 415 l~~~k~R 421 (775)
T PF10174_consen 415 LDEEKER 421 (775)
T ss_pred HHHHHHH
Confidence 4444333
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.19 Score=61.29 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=186.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhh-----hHHHHhhhhHHhhhccccccchhHHHHHHH-hHHH---H
Q 006170 247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI-----SKEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIE---Q 317 (658)
Q Consensus 247 kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~-----skel~gkLq~~qf~L~as~~REsel~sKL~-~~~e---q 317 (658)
++.+++.|+..||-.-.. ...|+..||-+=.+++. .-+...|+-..+..+.+..--.-+...|.. .+-+ .
T Consensus 289 ~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 289 RVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred HHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 455677888888876544 45688888865544443 223344444444444443333333333332 1111 1
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
.++.+..+......-...+.++++|.+.+|.+--.-+++|.++..+....+.++-...+.+.+++-..+++....+.-.+
T Consensus 368 ~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ 447 (1293)
T KOG0996|consen 368 NEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT 447 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH
Confidence 11112212211111133666888888888888888888888888777777777777777777777777777776666666
Q ss_pred HHHHHhhh----hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 006170 398 KVTQLTDT----NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (658)
Q Consensus 398 Kle~LSeT----NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk 473 (658)
+...|++- +.+|.+.+..|+.++....++...+|+.|.-...|+..|+.=...+.-+..++......-..=+++||
T Consensus 448 ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 448 EIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544 44555556677777777777888888888888888888777666666555555555555555566677
Q ss_pred hhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006170 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELI 553 (658)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrL 553 (658)
+++....++. . |..-+|.-+. ..+..-.++-..--|++..-.+....+.+++..-|+|+
T Consensus 528 ~~L~~~~~~~-------~-------e~~~~l~~~k-------~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrv 586 (1293)
T KOG0996|consen 528 GKLLASSESL-------K-------EKKTELDDLK-------EELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRV 586 (1293)
T ss_pred HHHHHHHHHH-------H-------HHHHHHHHHH-------HhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777655441 1 3333333333 33333333333344555555566666777777766666
Q ss_pred H---HHHhHHHHhhhHHH--HHHhhcCCCCccee
Q 006170 554 Q---KQVYSLTSENKLLV--EKLQYSGKSSSATM 582 (658)
Q Consensus 554 e---dQL~s~keenK~L~--ekLd~~~~~~~~~~ 582 (658)
+ ..+++...+|+.|. -.++..++-+.|+-
T Consensus 587 eE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 587 EEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccc
Confidence 5 45667788888873 34556665555543
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=97.77 E-value=0.16 Score=59.65 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006170 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (658)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~eik~qs 171 (658)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.75 E-value=0.24 Score=60.86 Aligned_cols=231 Identities=22% Similarity=0.310 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHhhhhhh-----hHHhhHHHhhhHHHHHhhhhhh---hHH---HHHHHHHHHHHHHHHHhccchHHH
Q 006170 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHT---EQV---AFRMEEAAEVVWGRFLEAENSAEV 278 (658)
Q Consensus 210 ~eqqR~iLrMLekSlA~Eld-----LEKkL~es~~~eeeLk~kL~~~---eqe---~~~lEE~~~~~~er~~EAENa~Ev 278 (658)
-++.++-++-|+..+..+.. +.........-...++..+++. +++ ....+.+.+..-+..-.+.+....
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778777764433 1111222222233344444432 222 222333344444555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhh-hhHHHHHhhcC--------------------------
Q 006170 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (658)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s-------------------------- 331 (658)
+......+....+..+..|.....+=.+++..+.....+|.. +++-+.=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 777777777777777777777777667777777777777763 22222222111
Q ss_pred -------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhH
Q 006170 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (658)
Q Consensus 332 -------------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa 392 (658)
..++.....+ .|+.++.....+++.+....++.+..+...+..+..++.++..++..+
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122211111 555666666666666666666677777888888888888888888888
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhcCC-CCcchhhhhHHHHHHHHHHHHHH
Q 006170 393 ESAEEKVTQLTDTNLELSEEINFLKGNN-DSNTKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 393 ~tAesKle~LSeTNdELerelk~Lesrs-~~deEK~~~LE~QLKEa~~QLqh 443 (658)
.++..++..+-.....++.+........ ..-..++..++.+++..+.+++.
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777766666554433321 11123344444444444433333
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.64 E-value=0.11 Score=59.10 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 006170 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (658)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~ 477 (658)
.+..++...+.||+.+.....++..+=..+-.+++++-++=+-.-+++-
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh 328 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELH 328 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666655444555566666655443334433
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.52 E-value=0.12 Score=56.27 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=69.0
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006170 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (658)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (658)
++++.+|++...++.... .++..+++++..++.+++..+.++..+..++...+.+++.+++.|..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~-----------~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKE-----------KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665555433 445566677777777777777777777777777777888888888888888
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHHH--HhhhhhcC
Q 006170 385 LYGAESRAESAEEKVTQLTDTNLELSE--EINFLKGN 419 (658)
Q Consensus 385 l~rAEsRa~tAesKle~LSeTNdELer--elk~Lesr 419 (658)
+..++.++......+...-.+.-..-. -+.+|-+.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a 148 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSG 148 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcC
Confidence 888888877777776665544443211 24455554
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.50 E-value=0.17 Score=61.66 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH----------------------------H
Q 006170 218 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR----------------------------F 269 (658)
Q Consensus 218 rMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er----------------------------~ 269 (658)
|.=+-+.+++-|.++ +.+-...-.+|..+|+..+ |=+..+-+++. .
T Consensus 1334 R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~-----L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~ 1407 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP-----LTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAV 1407 (1758)
T ss_pred HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC-----CchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchh
Confidence 444445555666666 5555556677777777766 34444444432 2
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhc---cccccchhHHHHHHHhHHHHHhh
Q 006170 270 LEAENSAEVLMGISKEMLGRFQIVQFNL---NGSLQRESELKSKLGDFIEQLKA 320 (658)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L---~as~~REsel~sKL~~~~eqL~~ 320 (658)
.-|++|...-+..--.+.+++-..+--| ..+..+=++.+.|-+.+.+|-++
T Consensus 1408 t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~a 1461 (1758)
T KOG0994|consen 1408 TRAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANA 1461 (1758)
T ss_pred cccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3355555555555555555554443333 33344456666666666666553
No 37
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.49 E-value=0.41 Score=56.82 Aligned_cols=198 Identities=21% Similarity=0.268 Sum_probs=123.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 324 ~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~a-------klEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
+++++...+++-+.++-+=+..+|+++.-......-+.+ .++...+....|.+++.-++-+|.+..+-+....
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445655555555555556655555544433333 3344456777888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhcCCCCcchh-------hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHH---HHhHH
Q 006170 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKK-------VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA---IWDME 466 (658)
Q Consensus 397 sKle~LSeTNdELerelk~Lesrs~~deEK-------~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyse---isdme 466 (658)
++|.-+...+.+...-+.+|+..-..-+.+ ++.|-..|.+...|+..+.+..+...+.-+-.-.+ +.|+.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777776542222222 34555666677777777776666665432222223 33333
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHH---------HHHHHHHHHhHHHHhhHHH
Q 006170 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK---------ILESSLNRANIEKAASAKE 531 (658)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lk---------sLE~sl~kA~q~ke~tlKe 531 (658)
-+.+ .|+.+.-.+.|+++.... +=..+|.....+|. .+-..+++|...++...+.
T Consensus 388 d~~e---~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 388 DKKE---RKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3333 666666666666665544 55555555555555 6667778888877777433
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.54 Score=57.59 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=35.4
Q ss_pred HhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhh
Q 006170 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ 291 (658)
Q Consensus 223 SlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq 291 (658)
|=++.-+||+.|+.-...-+++...+|..++ ....+-.|.-+.+|-.+.+.-..+.+...++
T Consensus 776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee-------~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~ 837 (1293)
T KOG0996|consen 776 SKESVEKLERALSKMSDKARQHQEQLHELEE-------RVRKLRERIPELENRLEKLTASVKRLAELIE 837 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455566777777766666666666665544 4455555555556655555555555444333
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.36 E-value=0.22 Score=59.50 Aligned_cols=300 Identities=22% Similarity=0.265 Sum_probs=156.0
Q ss_pred hhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHH
Q 006170 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESEL 307 (658)
Q Consensus 228 ldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel 307 (658)
-||.-||.-.|..-.|=+.||--.+-.++.+|-.-+ ...|+.--|.+|.--.+|+.-=
T Consensus 234 rdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE----------------------fkSkim~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 234 RDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE----------------------FKSKIMEQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888888888888875433 2233333333333222222211
Q ss_pred HHHHHhHHHHHhh---------------hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhhHHHH
Q 006170 308 KSKLGDFIEQLKA---------------KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-QTSQEQL 371 (658)
Q Consensus 308 ~sKL~~~~eqL~~---------------k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-EesE~EV 371 (658)
..-+...-++... |+.+=++.++- --||.++++++..||-+|.-.....++-.... -.+--+.
T Consensus 292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL-Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qf 370 (1243)
T KOG0971|consen 292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL-QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQF 370 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHH
Confidence 1111111111110 12222222221 23555555555555555554443333211110 0012255
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhH
Q 006170 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (658)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (658)
--++--+.-||+-+-|-.--...+...--.+.+-..-.+.++..|+...-.-..+++.+|.++...+.|..-| ..||+.
T Consensus 371 kqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~M 449 (1243)
T KOG0971|consen 371 KQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEM 449 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHH
Confidence 6677778888888776533333322222222222222233344444332112357889999999998888655 567777
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhh----HHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006170 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE----LKNKQSFMRDKIKILESSLNRANIEKAA 527 (658)
Q Consensus 452 ~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~E----LeEEL~~l~s~lksLE~sl~kA~q~ke~ 527 (658)
++|...+--.+.++-...||=.++++-+|.= ..+ |-|.|.| |-|||..+.+-.+.|+..-+.| .+
T Consensus 450 V~qLtdknlnlEekVklLeetv~dlEalee~----~EQ---L~Esn~ele~DLreEld~~~g~~kel~~r~~aa----qe 518 (1243)
T KOG0971|consen 450 VEQLTDKNLNLEEKVKLLEETVGDLEALEEM----NEQ---LQESNRELELDLREELDMAKGARKELQKRVEAA----QE 518 (1243)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HH
Confidence 7765554444455545555444455544322 222 2355544 4455555644445554433332 23
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (658)
++=|-..-..-+-++|.+|+..+..+-||..+..+
T Consensus 519 t~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 519 TVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34444444555678999999999999998776544
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.24 E-value=1.1 Score=56.53 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
....+.+-..+..+++.|.++..+..+..-.+-+.+++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888888888888777777776666665544
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.92 Score=55.06 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=59.4
Q ss_pred hhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc
Q 006170 233 KISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG 299 (658)
Q Consensus 233 kL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 299 (658)
.+++++.-.+..++|+.|...|.+..|-.......+...-.+.+.++...-..+-.+|+++-|+-++
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~ 473 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ 473 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 4556666778889999999999999999999999999999999999999999999999999888763
No 42
>PRK01156 chromosome segregation protein; Provisional
Probab=97.18 E-value=0.86 Score=53.81 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=15.6
Q ss_pred hHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006170 153 CEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (658)
Q Consensus 153 ~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (658)
...-+.+.+..+.+++.+...+...+..++
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555655555555554433
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=1.1 Score=54.52 Aligned_cols=319 Identities=21% Similarity=0.247 Sum_probs=167.2
Q ss_pred ccccccccccchHHHHHHHHHHHH----------HhhhhhhhHHhhHHHhhh----HHHHHhhhhhhhHHHHHHHHHH--
Q 006170 199 SNINGKSKMKNADQQRHILRMLEK----------SLARELDLEKKISELNQN----EEQLKLKLHHTEQVAFRMEEAA-- 262 (658)
Q Consensus 199 ~~~~~~~~mqt~eqqR~iLrMLek----------SlA~EldLEKkL~es~~~----eeeLk~kL~~~eqe~~~lEE~~-- 262 (658)
|++--..||.+.| ||-|+|- --|-+-.+|||=.-.+++ .++..=+|.-.-+|+..+=|-.
T Consensus 148 GrITkVLNMKp~E----ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~ 223 (1174)
T KOG0933|consen 148 GRITKVLNMKPSE----ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKI 223 (1174)
T ss_pred ccchhhhcCCcHH----HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 5666778999887 8999984 345555666554444443 3344444544455544332222
Q ss_pred ---HHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC-------C
Q 006170 263 ---EVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST-------K 332 (658)
Q Consensus 263 ---~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s-------~ 332 (658)
.+-..|+..|=- .+.-. --..-+..-..+.+.++..+.+.+..-+..++.++.. +
T Consensus 224 ~~dle~l~R~~ia~e---Y~~~~------------~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~r 288 (1174)
T KOG0933|consen 224 NRDLERLSRICIAYE---YLQAE------------EKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQR 288 (1174)
T ss_pred HHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 111122221100 00000 0001112223445555555555555444444333332 2
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006170 333 ----NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (658)
Q Consensus 333 ----esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdE 408 (658)
.-++.+|..++.++-...-.....+...+..+..-+.++..|...|.+++..+..-+.+....+.-.+.+-++-.+
T Consensus 289 d~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~ 368 (1174)
T KOG0933|consen 289 DAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQE 368 (1174)
T ss_pred HHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2344556666666555555555556666666665577888888889988888888777777655444444333332
Q ss_pred HH-------HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 006170 409 LS-------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (658)
Q Consensus 409 Le-------relk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~ 481 (658)
.. ..+..|..--++.++--..++.||..++.++-.|....+.+.- + +.|....+...++++.
T Consensus 369 ~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~----k---~e~~~~elk~~e~e~~---- 437 (1174)
T KOG0933|consen 369 DSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKL----K---LEHLRKELKLREGELA---- 437 (1174)
T ss_pred HHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHhhhhHhh----
Confidence 22 2233333222223334678999999998776666655554443 2 3344444443334433
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 006170 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (658)
Q Consensus 482 RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (658)
..+..+....+++..+.+-++.|+.++....-.... -++...|..-.-+-+.+|-.+.++|..++.
T Consensus 438 ----------t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~-~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~ 503 (1174)
T KOG0933|consen 438 ----------TASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ-EEALKQRRAKLHEDIGRLKDELDRLLARLA 503 (1174)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444488999999999999888887765433222 222222322223334555555566555553
No 44
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.04 E-value=0.00015 Score=85.25 Aligned_cols=222 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
.+++.++.+..++++++.++..+....+.....+..+++++..|..++..+......|.--...+..-.+++...+..|-
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~ 650 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT 650 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666677888899999999999999988888888888888888888888777776
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--------------------hhHH-HHHhHHHHHHHHhhhh
Q 006170 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--------------------MLYS-AIWDMETLIEDLKSKV 476 (658)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--------------------mkys-eisdme~vIEdLk~Kl 476 (658)
+.+.+-..-...||..+......|+.+...++.+.++.. +..+ .=+.++.-|.||+.++
T Consensus 651 ~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl 730 (859)
T PF01576_consen 651 SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARL 730 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554333333344555555555555555444444433111 1111 1123446677777777
Q ss_pred hhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHH---HHH
Q 006170 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELI 553 (658)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Er---drL 553 (658)
..+|.-+-..=. .-++.+.+++..||..|+.-..+...+.|-+-.--+-+.+++.|..-++ +++
T Consensus 731 ~e~E~~~~~~~k-------------~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~ 797 (859)
T PF01576_consen 731 EEAEQSALKGGK-------------KQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERL 797 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhcccc-------------cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 766654322211 1345778888888888877766666663333332233333333333322 344
Q ss_pred HHHHhHHHHhhhHHHHHHh
Q 006170 554 QKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 554 edQL~s~keenK~L~ekLd 572 (658)
++++-.+..+.|.+-..++
T Consensus 798 ~d~~~kl~~k~k~~krq~e 816 (859)
T PF01576_consen 798 QDLVDKLQLKLKQLKRQLE 816 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4444444444444433333
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.00 E-value=0.55 Score=48.49 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNH----RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~----Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (658)
.+.+|++.++..+.+|+..++.....+... +.+.+. ...-....+..|..++..+..++.....+|..|.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777776666666555 333332 2334556677777888888888877777777763
No 46
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.99 E-value=1 Score=51.31 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
++++..+++++......+... .+..|.+.++....+|.+|--.++--...-...+.........+..+.+.|.++..+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555555433 345555555556666666666666666666667777777888888888899999999
Q ss_pred hhhhhcC---CCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH
Q 006170 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (658)
Q Consensus 413 lk~Lesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme 466 (658)
+..|..+ +-.+.+++..++.+|++...++......+..... -|+.+.+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~----~ysel~e~l 385 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI----AYSELQEEL 385 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH
Confidence 9888776 2335677888888888887666654443333332 355554443
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.97 E-value=0.45 Score=57.82 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred HhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC
Q 006170 293 VQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST 331 (658)
Q Consensus 293 ~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s 331 (658)
..-.+.+...+..+.+.++. .+++++.....++.|..+
T Consensus 233 ~~e~i~~l~k~i~e~~e~~~-~~~~~e~~~~~l~~Lk~k 270 (1074)
T KOG0250|consen 233 KEEEIKNLKKKIKEEEEKLD-NLEQLEDLKENLEQLKAK 270 (1074)
T ss_pred HHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33344444444455555543 334444444444444433
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=1.2 Score=51.18 Aligned_cols=317 Identities=18% Similarity=0.164 Sum_probs=158.2
Q ss_pred HhhhhhhhHHhhHHHhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006170 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (658)
Q Consensus 223 SlA~EldLEKkL~es~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (658)
|--+=|+.+-. +...+.+|+.+|...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~n 276 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVN 276 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHH
Confidence 33444444444 34456677777654444 33334444444444444 333344444445555555555554
Q ss_pred ccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHhHH
Q 006170 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE---IRLQNANACFQTSQEQLNEMD 375 (658)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~---eQL~~A~aklEesE~EVaaLe 375 (658)
-..--.+.+++|-..-...|+....+++. +++|...|+.+...|-++++.-. ++....+...++-..++..++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222233333332222222222222221 46677777777776666655422 222222222222222333222
Q ss_pred HHHHHH----HHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-hhhhhc--CCCC----c----chhh-hhHHHHHHHHHH
Q 006170 376 NFIESL----KESLYGAESRAESAEEKVTQLTDTNLELSEE-INFLKG--NNDS----N----TKKV-GILENQLRDLEI 439 (658)
Q Consensus 376 rrIelL----KEel~rAEsRa~tAesKle~LSeTNdELere-lk~Les--rs~~----d----eEK~-~~LE~QLKEa~~ 439 (658)
..+..| .+.=..++.+...-+.+...+-..+..+... .....| ++-- . -..+ -.|..-+.+...
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 222222 2222345556666677777777777777766 555555 2110 0 0011 011111222221
Q ss_pred HHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHH
Q 006170 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (658)
Q Consensus 440 QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~ 519 (658)
++..|+. .. .-+-+.++.|.++|++++.-+..-+.++-.++++|-..-+++. +|..--+..++.||.++.
T Consensus 433 ~~~~~~~---~~----~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e---ee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 433 ELHEAEN---EL----ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE---EEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 2211111 11 1144567788888998888888888888888888885555444 556667777788888777
Q ss_pred HHhHHHHhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHhHH
Q 006170 520 RANIEKAASAKEVNHRTKLMM----EMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 520 kA~q~ke~tlKeae~Rak~aE----~lV~KL~~ErdrLedQL~s~ 560 (658)
..+..=....++++.+-+-++ ++|.-..-+|..+..||..+
T Consensus 503 ~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 503 NLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665555666666544443 34555555666666665543
No 49
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.80 E-value=1.4 Score=49.98 Aligned_cols=217 Identities=18% Similarity=0.270 Sum_probs=129.4
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 006170 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (658)
Q Consensus 208 qt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (658)
++.+++.+|+. ++. ..-..+++.|.++....+.|+..+-....-. .++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le-----------~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLE-----------SKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 333 3444788888888888888887774333333 344444445555665555544
Q ss_pred h-hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006170 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (658)
Q Consensus 288 g-kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (658)
. ++.... ......+.+...|.+....|+.-...|++. .+|+..|+..+.+|..+|......+...+.+...
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~----k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKA----KEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222221 355667778888888888888888888776 4678899999999999999988888888777666
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
....|+.|+..+.-++.++.-+...-..+-.....+..+-.++..+....+. .....-..+..++..++++++
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~-------ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK-------EAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555555433333332222233333333333333322222 122222345556666666666
Q ss_pred hhHhHHH
Q 006170 447 SSEASQE 453 (658)
Q Consensus 447 saEas~e 453 (658)
.+.+...
T Consensus 408 ~i~t~E~ 414 (522)
T PF05701_consen 408 AIKTAEE 414 (522)
T ss_pred HHHHHHH
Confidence 6666655
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.76 E-value=0.17 Score=59.28 Aligned_cols=219 Identities=18% Similarity=0.279 Sum_probs=119.1
Q ss_pred HHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 006170 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (658)
Q Consensus 216 iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (658)
...=||.-|.+ |-..|..+|++|.||+..+...++ .+| .+++++..++..-..+|.
T Consensus 419 a~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~------------~Er---------~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 419 AISRLEADVKK---LRAELQSSRQSEQELRSQISSLTN------------NER---------SLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhccc------------cch---------HHHHHHHHHHHHHHHHHH
Confidence 34458888888 888999999999999999875443 111 233444444433333333
Q ss_pred hccccc-cchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------
Q 006170 296 NLNGSL-QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN------------- 361 (658)
Q Consensus 296 ~L~as~-~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~------------- 361 (658)
-+.... .|+.| +.++.+|+. -+...+++-..+|.||.+-.-+-..+.
T Consensus 475 Kl~~L~~aRq~D-----Kq~l~~LEk--------------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 475 KLQNLVQARQQD-----KQSLQQLEK--------------RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 222211 12222 112222221 122444555556666655443322111
Q ss_pred --hhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH-HHH
Q 006170 362 --ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLE 438 (658)
Q Consensus 362 --aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLK-Ea~ 438 (658)
..-|.+.....+|++.+.-|..++...|++...++.++..+-.-.-|...+...|-+-=.+--||-..||+.|. |.+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11122355778888888888888888899988888888655554222222222222211112346677777775 333
Q ss_pred HHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 006170 439 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (658)
Q Consensus 439 ~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~r 478 (658)
+.|.==.|. .++.+|....-..+..++.-|.|||.|+..
T Consensus 616 iKldLfsaL-g~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 616 IKLDLFSAL-GDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322233 234455666666777777788888887653
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.65 E-value=0.74 Score=50.89 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNAN---ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~---aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdEL 409 (658)
+..+..|.+.+..++.+++.....+.... ........++..+++.|...+..+.....+......+...|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 34455555566666666666555554222 222333556666666666666666666666666666666666665555
Q ss_pred HHHhhhhhc
Q 006170 410 SEEINFLKG 418 (658)
Q Consensus 410 erelk~Les 418 (658)
+.++..+..
T Consensus 378 ~~~l~~l~~ 386 (562)
T PHA02562 378 AEELAKLQD 386 (562)
T ss_pred HHHHHHHHH
Confidence 555554444
No 52
>PRK11637 AmiB activator; Provisional
Probab=96.65 E-value=0.98 Score=49.31 Aligned_cols=34 Identities=3% Similarity=0.064 Sum_probs=21.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
.+..+....+-....+.+|..+..+|...|..+.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566777777777777776654
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.64 E-value=2.2 Score=52.26 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
+++.+....-+++-..+|.+.++....+|-.++
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555544444443
No 54
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.59 E-value=1.9 Score=48.71 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
+-+.|+..+++.|... + +...-.|++.|-.-..+++-+=+..+++|-.+=.++.-...-+...|+
T Consensus 366 ~ke~E~q~lr~~l~~~------~---~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR------A---SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHH------h---ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 4566666666665542 1 122245788886666655554456666555544444444444444555
No 55
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.55 E-value=0.31 Score=53.50 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCC
Q 006170 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (658)
Q Consensus 543 V~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~ 577 (658)
....+.+..+|+.+......-|..+...+++++..
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888888888888888876643
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.55 E-value=3.3 Score=51.20 Aligned_cols=139 Identities=21% Similarity=0.270 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhccc--------chhhH
Q 006170 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE--------DNFEL 500 (658)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse--------~N~EL 500 (658)
.|+.++..++.+++.+..-.++... .++..-..++.++.++.+++...+.++.+..-|.. .+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEK-------QLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566555555543333322 22223334444555555555555555444442221 22344
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Ra--------k~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
++...-+...+..++..+.+..+....+..+...+. .........+...++.+..++-..+.+++.--..|+
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667777777777777777777655544432 233456666666666777777776666666666666
Q ss_pred hc
Q 006170 573 YS 574 (658)
Q Consensus 573 ~~ 574 (658)
.-
T Consensus 757 ~~ 758 (1201)
T PF12128_consen 757 QQ 758 (1201)
T ss_pred HH
Confidence 44
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.46 E-value=1.3 Score=50.85 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh--------------hhhhHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG--------------AESRAESAEEK 398 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r--------------AEsRa~tAesK 398 (658)
.+|+..|.+|+...++.+....+.+.+....+-..+++++.+.++|..+++++.+ +-..++....-
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444444443333444456666666666666655443 33333333333
Q ss_pred HHHHhhhhHHHHHHhhhhhcC
Q 006170 399 VTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 399 le~LSeTNdELerelk~Lesr 419 (658)
-..+.-....|..++.|++.-
T Consensus 199 r~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHhc
Confidence 344556667777777777754
No 58
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.38 E-value=1.3 Score=52.19 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAK---EVNHRTKLMMEMVMQLATQRELIQKQV 557 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlK---eae~Rak~aE~lV~KL~~ErdrLedQL 557 (658)
.|--.|+.++.+---||.+|..-+--|..-.. |+--.-+.+...+.+=.+||..|...|
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888888887777776643 333345555555555555555554433
No 59
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.33 E-value=2.5 Score=52.32 Aligned_cols=89 Identities=24% Similarity=0.272 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006170 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs 420 (658)
++.+.|+.+++.+..++..++... ...+.-.+....+.-.+..++--+.+..++|..+..++.++...+..++..+
T Consensus 508 ~~~~~l~~~~~~~~eele~~q~~~----~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~ 583 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQKKN----DNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEEN 583 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhcc
Confidence 344444444444444444442221 2223334445555566666666677777888888888888888888777755
Q ss_pred CCcchhhhhHHHH
Q 006170 421 DSNTKKVGILENQ 433 (658)
Q Consensus 421 ~~deEK~~~LE~Q 433 (658)
..-.+++..|+.-
T Consensus 584 ~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 584 RDLEDKLSLLEES 596 (1317)
T ss_pred ccHHHHHHHHHHH
Confidence 5556777776655
No 60
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.14 E-value=0.0014 Score=75.50 Aligned_cols=191 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006170 370 QLNEMDNFIESLKESLYGAESRA------ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa------~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (658)
.++..+..|..|+.++...+..+ ..=...+..|..+|.++..+++.|+... +.++.|+.+.+..+.+|+.
T Consensus 224 ~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~----~n~elLeEe~~sLq~kl~~ 299 (722)
T PF05557_consen 224 SLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQ----ENVELLEEEKRSLQRKLER 299 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Confidence 44445677777777666655543 1123467789999999999999999864 3455566666555555554
Q ss_pred hHhhhHhHHH---HHhhhHHHHHhHHHHHHHHhhhhhhhh---hhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 006170 444 AKVSSEASQE---QQSMLYSAIWDMETLIEDLKSKVSKAE---SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (658)
Q Consensus 444 A~asaEas~e---qQ~mkyseisdme~vIEdLk~Kl~rAE---~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~s 517 (658)
+...-+.-.. +-..+-++......++.+.-....-.+ .+.....-.+..|.+.+-.+.-+++.+...+..|+..
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e 379 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQE 379 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4322221111 111122333333344442110000000 0111222234444555555555555544444444443
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
.. .+...+..-. .....+...+.||+.|..-..++...|-.-|+.-.
T Consensus 380 ~~-------~l~~~~~~l~----~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 380 KE-------QLLKEIEELE----ASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HH-------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 3322222211 11222344455666666666666666655555433
No 61
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=4.4 Score=47.93 Aligned_cols=224 Identities=25% Similarity=0.274 Sum_probs=114.8
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 006170 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS--EVLTMKEKVKSLEEQ 349 (658)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~es--Ev~sLqkKvksLE~q 349 (658)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+.+-+.-. -.-....++..++.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 34446778888888888777 45555556666555555544443000 000111233344444
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAESA-------EEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~tA-------esKle~LSeTNdELerelk~Lesr 419 (658)
..+.+-......+-+.+ .-+..-+|+.+|.-|=.++.+++-+.=-. -.+...|.+.-+.++..+.-|.+.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333322222 13344456667776666666666554433 334444444444444444444444
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--hhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 006170 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (658)
Q Consensus 420 s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N 497 (658)
...-..++.-||.|++-.- =.-..-+.+--..+|. |.-.++.+...-.++||.++.+.+...+..+.+|.
T Consensus 519 ~~~~~~~i~~leeq~~~lt--~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~------ 590 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLT--SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA------ 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHhh--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3323444555555555332 1111122222222222 12235566666777777888888877777777777
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Q 006170 498 FELKNKQSFMRDKIKILESSLNRA 521 (658)
Q Consensus 498 ~ELeEEL~~l~s~lksLE~sl~kA 521 (658)
++..||...+-+.+-||.-+.+.
T Consensus 591 -e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 591 -ELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766665544443
No 62
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.09 E-value=2 Score=44.03 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=115.4
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (658)
.+|+.+....+-.+.|..+...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 3556666666667778888877777777888888888887776666666666666677776654433 66667788899
Q ss_pred HHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006170 309 SKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 309 sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (658)
.+|+.+..=|.. |...+...+..-+.|...-++=+..+.+++..-..+.... .+.....++..+.++.+|.+-+.+
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l---~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL---AEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888766653 1111222222222222222211111112211111111111 122345666777777777777777
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhh
Q 006170 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (658)
Q Consensus 388 AEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (658)
|......|...+..-..+-.++++....+... .......|.+++.-|.+|...+
T Consensus 204 A~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~-------~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 204 AQNKTREAEDLNRANQKNLEDLEKKKQELSEQ-------QNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665555555555555544444432 3444455555554444444333
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.96 E-value=4.2 Score=46.52 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
++++..+++++...-..|+.. .+..|...++....+|..|=..++-=-..-..-+.........+..+.+.|.++..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444322 233344444444444444333333333333345667777788888999999999999
Q ss_pred hhhhhcCC---CCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006170 413 INFLKGNN---DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (658)
Q Consensus 413 lk~Lesrs---~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsK 489 (658)
+..+..+= ..+.++...+++|++....+........++... -|+.+.....-+. ..+..-+..-...-..
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~----~yS~i~~~l~~~~---~~l~~ie~~q~~~~~~ 401 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV----PYSEIQEELEEIE---EQLEEIEEEQEEINES 401 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99988872 224668889999998888777766655555544 6776665554333 4444333333333333
Q ss_pred hh
Q 006170 490 CI 491 (658)
Q Consensus 490 c~ 491 (658)
+.
T Consensus 402 l~ 403 (560)
T PF06160_consen 402 LQ 403 (560)
T ss_pred HH
Confidence 33
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.93 E-value=0.002 Score=76.07 Aligned_cols=318 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHH
Q 006170 231 EKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSK 310 (658)
Q Consensus 231 EKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sK 310 (658)
|..|.+.+..-.+..-.++-+...+..|+.....+...+-++++..-.|.-.-..+..-|.-++-.|. .|+--+..
T Consensus 186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le----eEtr~k~~ 261 (859)
T PF01576_consen 186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE----EETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----hHhhhhhh
Confidence 33444444444444444444455555555555566666656655554443333333333333332222 22222222
Q ss_pred HHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHH
Q 006170 311 LGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLK 382 (658)
Q Consensus 311 L~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLK 382 (658)
|.....+++ ..++.|...-++| .+-...++.++...+.++..++.+++.- +.-=..|.+.+..+.
T Consensus 262 L~~~l~~le---~e~~~L~eqleeE----~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~ 334 (859)
T PF01576_consen 262 LEKQLRQLE---HELEQLREQLEEE----EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQ 334 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHH---HHHHHHHHHHhhh----hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222222222 1222222221111 1222334555555555555555555442 111124445555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHH
Q 006170 383 ESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (658)
Q Consensus 383 Eel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei 462 (658)
+.+..+..+..+.+-.+.-|+.-...+...+.-..+.....+.|...++.+|-+.+..+....+--++++..-..+..++
T Consensus 335 e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~ 414 (859)
T PF01576_consen 335 EQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETEL 414 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555554444444444444444444444444444443333445555555555554443333333333333222233333
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhh--------------hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 463 WDMETLIEDLKSKVSKAESKTESVEEQCI--------------VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 463 sdme~vIEdLk~Kl~rAE~RaE~aEsKc~--------------~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
..+..-.+++...+...+..-..+...+- -|-.....|+.++.-+..-|..+|..++.+...+...
T Consensus 415 ~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl 494 (859)
T PF01576_consen 415 FKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRL 494 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333222221111111111 1111222333344444444444444444333333222
Q ss_pred -----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 006170 529 -----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (658)
Q Consensus 529 -----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (658)
-+++..+-+-++.+-..++..++.|+.+|-.
T Consensus 495 ~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~ 536 (859)
T PF01576_consen 495 QVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE 536 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH
Confidence 3455555556666666666666666666544
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=1.7 Score=51.88 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=63.6
Q ss_pred hhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (658)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (658)
.-+++.....++.++++++|.+.+= ..-++++.+...+++-.++.=++++.....-..++.+|++-...||..
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~l-------D~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIREL-------DYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467778889999999998876653 333444444444444444333567777777777778888877777764
Q ss_pred hHhhhhhh----------HHHHHhHHHHHHHHHHHHHhhhhhH
Q 006170 360 ANACFQTS----------QEQLNEMDNFIESLKESLYGAESRA 392 (658)
Q Consensus 360 A~aklEes----------E~EVaaLerrIelLKEel~rAEsRa 392 (658)
+..+.... ..+++++.-.++.++-+...+...+
T Consensus 718 ~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 718 ISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred cccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333221 3355555555555555544444444
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.79 E-value=1.9 Score=49.64 Aligned_cols=302 Identities=15% Similarity=0.166 Sum_probs=158.7
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHHhh
Q 006170 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (658)
Q Consensus 146 ~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA 225 (658)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y-------------------- 90 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY-------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh--------------------
Confidence 36677777777777777776666666666655421 11 2222222
Q ss_pred hhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchh
Q 006170 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (658)
Q Consensus 226 ~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (658)
|..|..++.+.++-.-..+-++.+...+.+..+.+-.||.+++.....-+.......++|..++.-++=.-.|=.
T Consensus 91 -----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 91 -----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 222344455555555556666777777777777777777777777777777777777777777666554433333
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHHH---------------------------H
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEV---LTMKEKVKSLEEQLKESE---------------------------I 355 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv---~sLqkKvksLE~qLdes~---------------------------e 355 (658)
.+.+.++....+...--..|..++.-.+.|. ..++.+++.|..+|+-.. -
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 3333332222222222233333332222222 233333333333332222 2
Q ss_pred HHHHhHhhhhhh-HH-------HH-HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 006170 356 RLQNANACFQTS-QE-------QL-NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (658)
Q Consensus 356 QL~~A~aklEes-E~-------EV-aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK 426 (658)
+|+.|-..+-+- +. ++ ....++|+.++....++=.-...+.+.+..+--..+.|...+..|++++..-+.+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 222221111110 11 11 1455566666655555545555566666666666777777777777776544555
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHH
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (658)
++-|+.||.+-. ..--..+.++.+-|..+...|...-.. .-.|=+++.-|.-||+.
T Consensus 326 I~dL~~ql~e~~-----------------r~~e~~L~~kd~~i~~mReec~~l~~E-------lq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ-----------------RSFEQALNDKDAEIAKMREECQQLSVE-------LQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHhhhhhhh-----------------hhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHhhchHhHHHhHHHH
Confidence 555555554422 112235666666666555554433322 34556677778888888
Q ss_pred HHhhHH
Q 006170 507 MRDKIK 512 (658)
Q Consensus 507 l~s~lk 512 (658)
||.=|.
T Consensus 382 YRkLLe 387 (546)
T KOG0977|consen 382 YRKLLE 387 (546)
T ss_pred HHHHhc
Confidence 875443
No 67
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.61 E-value=2.7 Score=48.90 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=40.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
...-..-|+.++..++.++..||.+++.=..+...... ++. ...+.++..++.||..++.++..|.+
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------------~~~-~~~~~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------------NNA-TLATQQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------------CCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777777777766665554433321 121 11235677777777776655555554
Q ss_pred hhHh
Q 006170 447 SSEA 450 (658)
Q Consensus 447 saEa 450 (658)
-...
T Consensus 259 ~~~~ 262 (754)
T TIGR01005 259 TADS 262 (754)
T ss_pred HHHH
Confidence 4443
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.47 E-value=6.3 Score=45.06 Aligned_cols=288 Identities=15% Similarity=0.184 Sum_probs=138.9
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHH
Q 006170 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSL 346 (658)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksL 346 (658)
||+.|-+..--+......+-.+++.+.-.|+.....|.+-+.....+.+.-.. |...+.+=++- -+=+..|.+++..+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~ 177 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENL 177 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHH
Confidence 66666666666666666666666666666665555555555444444444433 22222222221 23345677777777
Q ss_pred HHHHHHHHHHH-----HHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006170 347 EEQLKESEIRL-----QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (658)
Q Consensus 347 E~qLdes~eQL-----~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~ 421 (658)
|.+|..+..-. ..|..-+.....++..|+..++.+-.=+...+.-.= ..+ ++|..+..-+...+.
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P---~ql-------~el~~gy~~m~~~gy 247 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELP---DQL-------QELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH-------HHHHHHHHHHHHcCC
Confidence 87777776632 234444444455666666666665554444333221 223 344444444444433
Q ss_pred C-----cchhhhhHHHHHHHHH-----HHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 422 S-----NTKKVGILENQLRDLE-----IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 422 ~-----deEK~~~LE~QLKEa~-----~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
. -+.++..+..++.++. ..|..|....+....+-.-+|+.+.+--.... .++.........+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~-------~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK-------YVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHH
Confidence 2 1455666666666532 23344444444444434445654443322211 12222222223333
Q ss_pred hcccchhhHHHHHHHHHhh----------HHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH
Q 006170 492 VLSEDNFELKNKQSFMRDK----------IKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM 544 (658)
Q Consensus 492 ~Lse~N~ELeEEL~~l~s~----------lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~ 544 (658)
=+.+.|.+|..|+..|..+ ...++..++....+-... ++++..+-+.++.-..
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ 400 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQE 400 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444666666666666 555555555544443322 3344444444444444
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 545 QLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 545 KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
++...+..|.......+.+...+..++..
T Consensus 401 ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 401 KLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 69
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=10 Score=46.91 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh-
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI- 413 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerel- 413 (658)
++.+-+-|+..||.+++-+..++.+.+-+++..+.++.-+++.|.....+++.-+-++++.+.....|.+--.+.+..+
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999988887776666666666665555555444444444443333333332222210
Q ss_pred -hhhhcCCCC----c--------chhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006170 414 -NFLKGNNDS----N--------TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (658)
Q Consensus 414 -k~Lesrs~~----d--------eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE 480 (658)
.|-..-+.. + ..|.-.+++|+--++.||+-- +|+..-..+.+++.-|+++...+.--+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe---------~~~d~~~~ve~~~~~v~~~~~~~~~~~ 827 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFE---------KQKDTQRRVERWERSVEDLEKEIEGLK 827 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhe---------ecccHHHHHHHHHHHHHHHHHhHHhhH
Confidence 011111110 0 122333344443333333332 233333445555555555555555444
Q ss_pred hhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006170 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 481 ~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (658)
.+-+.++..+. +. +++.- ++ .+..+.+..-+++...-..-+..-.++|..++..++.+|-..
T Consensus 828 ~~e~~~~k~i~-------e~-~~~e~-k~---------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 828 KDEEAAEKIIA-------EI-EELEK-KN---------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HHHHHHHHHHh-------hH-HHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 44445555555 33 22222 11 222222222244444444555566688999999999999999
Q ss_pred HHhhhHHHHHHhhcCCCCccee
Q 006170 561 TSENKLLVEKLQYSGKSSSATM 582 (658)
Q Consensus 561 keenK~L~ekLd~~~~~~~~~~ 582 (658)
..+...|-..|+-..+..|..-
T Consensus 890 ~~er~~lL~~ckl~~I~vPl~~ 911 (1141)
T KOG0018|consen 890 ESERHNLLSKCKLEDIEVPLSS 911 (1141)
T ss_pred HHHHHHHHHHhhhccccccccC
Confidence 9999999888887766666653
No 70
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.28 E-value=8.1 Score=45.19 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=110.5
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhh------
Q 006170 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG------ 281 (658)
Q Consensus 208 qt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g------ 281 (658)
++++-.|..-+=|=|+--+|.|. .+...++-|-+--.||+++.+|.---=+|-+
T Consensus 55 ~~pe~k~k~~~~llK~yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~ 114 (629)
T KOG0963|consen 55 NTPEDKLKMVNPLLKSYQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLN 114 (629)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhh
Confidence 35566666666666666666653 3556778888889999999999765444433
Q ss_pred -hhH------HHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh------hHHHH---HhhcC---C----hhHHHH
Q 006170 282 -ISK------EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK------DMVLQ---KLEST---K----NSEVLT 338 (658)
Q Consensus 282 -~sk------el~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k------~~~le---kl~~s---~----esEv~s 338 (658)
..+ .+..+|......|.+..-.+..++ +|+...-+++++ ..+.. ++... + -.+-..
T Consensus 115 k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~-~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~ 193 (629)
T KOG0963|consen 115 KQQKASEENEELKEELEEVNNELADLKTQQVTVR-NLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQN 193 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 333333333333322222111111 111111111110 00000 01110 0 245556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 339 MKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
+++++..+|+..+..+..+..+..++... ..++++..-.|.++=.++.+|..|+-.++..|+.|.+....-+...+
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777788887777777777766666553 55788889999999999999999999999999998877666665544
No 71
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.19 E-value=9.3 Score=45.34 Aligned_cols=123 Identities=23% Similarity=0.260 Sum_probs=77.3
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh----hhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006170 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT----DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (658)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS----eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (658)
..|..++..|..|++-+.--..|+..-+..+..++ +-+.+|++..++-.+. |-+|.+.+
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k-----------e~eleeL~------ 411 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK-----------EVELEELK------ 411 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh-----------HHHHHHHH------
Confidence 37779999999999999988999998888876554 4555665555533332 44566554
Q ss_pred HhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 006170 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (658)
Q Consensus 445 ~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ 524 (658)
..-+..+. ++++-.+.+.+.|.|++.-. +|.-=|......+-+|+..+..+-..
T Consensus 412 -~~L~e~qk----ll~ekk~~eki~E~lq~~eq---------------------el~~llq~~ekev~dLe~~l~~~~~~ 465 (786)
T PF05483_consen 412 -KILAEKQK----LLDEKKQFEKIAEELQGTEQ---------------------ELTGLLQIREKEVHDLEIQLTTIKES 465 (786)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 33333333 68888888888887776522 22333445555566666666655555
Q ss_pred HHhhHHHHHH
Q 006170 525 KAASAKEVNH 534 (658)
Q Consensus 525 ke~tlKeae~ 534 (658)
+-.|.+....
T Consensus 466 eq~yskQVee 475 (786)
T PF05483_consen 466 EQHYSKQVEE 475 (786)
T ss_pred hHHHHHHHHH
Confidence 5555444433
No 72
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.1 Score=53.50 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH---HHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL---ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNd---ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (658)
++++......+..|++.+.--+.++..+-++.-.+++-++ -.+++++.++..+-.-.-+.+.+.++|.+.+.-.+.-
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566677777777777777777777766555544444222 2223333333332212334667777785545455666
Q ss_pred HhhhHhHHHHHhhhHHHHHhHHHHHHHHhh
Q 006170 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (658)
Q Consensus 445 ~asaEas~eqQ~mkyseisdme~vIEdLk~ 474 (658)
++....++-.|+-.-..+.|.+.|+|+++.
T Consensus 771 k~~~~~a~~~~~~~~~~~~~qeqv~El~~~ 800 (970)
T KOG0946|consen 771 KATQRSAELSQGSLNDNLGDQEQVIELLKN 800 (970)
T ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHHHh
Confidence 666666666667777888899999998554
No 73
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.99 E-value=2.3 Score=45.58 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=83.0
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHH
Q 006170 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQ 545 (658)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~K 545 (658)
|+=++.++..++...+.++.+.. +...+|.-+..++..|+...+.+..++... ++....|-.-+.+++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566788888888888888888 889999999999999999999888887776 67778899999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekL 571 (658)
|..|+.|=..++..+......|...+
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHH
Confidence 99999999999999998888876554
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.91 E-value=5.5 Score=41.25 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLe 554 (658)
.|.-+|..++++...||..+......-..-..+....-.-.+.-+.++..+..+..
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 66666777777777777776666555444444444444444444444444444443
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=11 Score=43.73 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh-hccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006170 255 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (658)
Q Consensus 255 ~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (658)
++||+ -+..-|.+|+.++--..-+....+.-+.++-...+ .+ ..++......++++. ++++..+
T Consensus 195 k~f~d-y~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~i-------e~l~~~n~~l~e~i~----e~ek~~~--- 259 (581)
T KOG0995|consen 195 KLFFD-YTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEI-------EDLKKTNRELEEMIN----EREKDPG--- 259 (581)
T ss_pred HHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHhcCcc---
Confidence 45554 45556777776443366666666665555554333 23 234555555555555 2233222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIR 356 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQ 356 (658)
=..+|.+|...|.+++.+++.-
T Consensus 260 -~~eslre~~~~L~~D~nK~~~y 281 (581)
T KOG0995|consen 260 -KEESLREKKARLQDDVNKFQAY 281 (581)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHH
Confidence 2235666666666666655544
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.56 E-value=0.0098 Score=68.69 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh---hhHHHHHHhhhhhcCCCCc---chhhhhHHHHHHHHHHHHHH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD---TNLELSEEINFLKGNNDSN---TKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe---TNdELerelk~Lesrs~~d---eEK~~~LE~QLKEa~~QLqh 443 (658)
.+..+..-++.||+++..-+.|+..++.-...+.. -+..|++++..-.+=.... -..-..+=..|... |..+
T Consensus 275 ~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~l--q~~~ 352 (722)
T PF05557_consen 275 HLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQL--QQEN 352 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHH
Confidence 44455566777777777777776666644444433 3666666655433221100 00111122222211 1122
Q ss_pred hHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHH-------HHHHHHHhhHHHHHH
Q 006170 444 AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK-------NKQSFMRDKIKILES 516 (658)
Q Consensus 444 A~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe-------EEL~~l~s~lksLE~ 516 (658)
+.. ..+.+-.-..++.+...+.+|..++..+...++.++.+...+...+..|+ .|..+||.-|++.+.
T Consensus 353 ~~L-----~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 353 ASL-----TEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 12223355667777777777777777777777777777766666666665 455566666666554
Q ss_pred H
Q 006170 517 S 517 (658)
Q Consensus 517 s 517 (658)
-
T Consensus 428 e 428 (722)
T PF05557_consen 428 E 428 (722)
T ss_dssp -
T ss_pred h
Confidence 3
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.22 E-value=1.7 Score=45.29 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (658)
+...+..+.+...+.|+.....+..++..+++.+.++.++++.+-.++.++..+.+|...++.++
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666677777777777777777777777777777777777777777777777776
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.20 E-value=7.7 Score=40.64 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 006170 532 VNHRTKLMMEMVMQLATQRELIQKQVY 558 (658)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (658)
++.....+.+-+..+..+++.|...+-
T Consensus 147 ~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 147 LEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444455555556666666555543
No 79
>PRK11281 hypothetical protein; Provisional
Probab=94.19 E-value=2.8 Score=51.84 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=23.2
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 006170 492 VLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (658)
Q Consensus 492 ~Lse~N~ELeEEL~~l~s~lksLE~sl~kA 521 (658)
-+.+.|.+|.++|.....++..+-....++
T Consensus 282 ~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 282 QELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355789999999999999988876555443
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.16 E-value=3.7 Score=39.81 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=78.0
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
++|..+ .++.-+|.++|-+||.+|..++..+..+....|.+..++.+|+..|..+-..+.+.+.-+.+..+.-..+.+.
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6778899999999999999999999999999898899999988888888888888888888888877777777
Q ss_pred hHHHHHHhhhhhcC
Q 006170 406 NLELSEEINFLKGN 419 (658)
Q Consensus 406 NdELerelk~Lesr 419 (658)
-.+....+..|+++
T Consensus 89 lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 89 LQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 81
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.15 E-value=21 Score=44.66 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceeccCCCCcccccccccCCcccccccccchh
Q 006170 532 VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSED 611 (658)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (658)
+.+|.+... +|-+.-+..-.++-.++--++.+.+..+..+ ++=+.-.+.+|.|++++-..- .+
T Consensus 385 l~~rr~LL~----~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~-----------~~L~~~lFWv~s~~Pi~l~w~--~~ 447 (1109)
T PRK10929 385 LRTQRELLN----SLLSGGDTLILELTKLKVANSQLEDALKEVN-----------EATHRYLFWVADVSPISLSYP--LE 447 (1109)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhccCCCCCCChHHH--HH
Confidence 444555544 4444556666677778888888877777665 444455666777777754332 34
Q ss_pred hhhhhhhhccCCc
Q 006170 612 AVSLMKSVQAGPT 624 (658)
Q Consensus 612 ~~~~~~~~~~~~~ 624 (658)
....++..-..++
T Consensus 448 ~~~~l~~l~~~~~ 460 (1109)
T PRK10929 448 IAQDLRRLLSLDT 460 (1109)
T ss_pred HHHHHHHHhcccc
Confidence 4444444433333
No 82
>PRK11281 hypothetical protein; Provisional
Probab=94.13 E-value=21 Score=44.63 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=47.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccc
Q 006170 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (658)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 301 (658)
|..+|...++.....+.....+...+..+.+..|--+....+.+.|+|.+...|++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455555566666677778888889999999999999999999999999999998844
No 83
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.00 E-value=23 Score=44.56 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhc
Q 006170 258 MEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 297 (658)
Q Consensus 258 lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L 297 (658)
+--....+.+||.+.+|-...|......+...|..+|--.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778899888888888877777777777665443
No 84
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.90 E-value=8.6 Score=39.40 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhH
Q 006170 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (658)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (658)
.+|...+..++.++..+|.+......+|..+...|.+...=+.-++..-. .-+...+++-..++..++ .+....
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~---~~i~e~~~~~~~~~~~i~---~~~~er 78 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIA---QMIEEKQKQKELSEAEIQ---KLLKER 78 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHH---HHHhhH
Confidence 35666677777777777777777777777777777766665554444311 111111111111111111 011111
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH----HHHHHHHhHHHHh
Q 006170 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKAA 527 (658)
Q Consensus 452 ~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL----E~sl~kA~q~ke~ 527 (658)
+. .+..+.-++.-.-||-.++++...-++.+-..=-.|-.+--+...-|.-.+.|...| +.+++.||..=+.
T Consensus 79 dq----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 79 DQ----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 344444444444444444444433333222211111122234444444444454444 4667777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
.-+..........-.+.+.+..+.-|+.+|-.-+.+|.-|..=||..
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888888999999998899998888888753
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.89 E-value=16 Score=42.38 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006170 142 IMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (658)
Q Consensus 142 ~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (658)
.+++++.++.+....+....+.+..++.+....++-+..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555555443
No 86
>PRK09039 hypothetical protein; Validated
Probab=93.88 E-value=8.9 Score=41.54 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
...+...+.+|+..+.|+...-..+.--.....+++.+|..|...+.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444443222222223344455555555555444
No 87
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.87 E-value=6.8 Score=46.95 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHH-------HHHHhhhhhhhhhhhhhhhhhhhhcccchh
Q 006170 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL-------IEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~v-------IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ 498 (658)
|+..||..|..-+ +..++.-.+-..++..+.++..= -+|+|.+ -+...-.|-.|.+
T Consensus 681 Ki~~Le~Ele~er-------~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~k---qe~EiaaAA~KLA------- 743 (769)
T PF05911_consen 681 KISSLEEELEKER-------ALSEELEAKCRELEEELERMKKEESLQQLANEDKKIK---QEKEIAAAAEKLA------- 743 (769)
T ss_pred HHHHHHHHHHHHH-------hcchhhhhHHHHHHHHHHhhhcccchhhccccccccc---hHHHHHHHHHHHH-------
Confidence 4666666665544 44444433222345555554311 2322222 2223345666677
Q ss_pred hHHHHHHHHHhhHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILES 516 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~ 516 (658)
|=-+=|..||..||+|..
T Consensus 744 ECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 744 ECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 777778888888888853
No 88
>PRK09039 hypothetical protein; Validated
Probab=93.80 E-value=3.6 Score=44.48 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (658)
++..+.+++..|+.++...-+.|.--.......+..++.+...+..++..-.+
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~ 99 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSR 99 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333344444455454444444444333
No 89
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.70 E-value=12 Score=40.47 Aligned_cols=179 Identities=23% Similarity=0.298 Sum_probs=109.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH------------------HhhhhhcCCC-------CcchhhhhHHHHH
Q 006170 380 SLKESLYGAESRAESAEEKVTQLTDTNLELSE------------------EINFLKGNND-------SNTKKVGILENQL 434 (658)
Q Consensus 380 lLKEel~rAEsRa~tAesKle~LSeTNdELer------------------elk~Lesrs~-------~deEK~~~LE~QL 434 (658)
-|+-++.---+|+++|...+..-..+--.++. .++.|+..+. ..+-|.++|+..|
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~el 167 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIEL 167 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667778887777653333222221 1222222211 1245677777777
Q ss_pred HHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 006170 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (658)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL 514 (658)
....-.|..-.-+.|..++..+-...-++.|+.+--.=++|+.+.-.+-+++|.++.=|--.|+ -++..|.+.
T Consensus 168 h~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~-------LLrQQLddA 240 (305)
T PF14915_consen 168 HHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM-------LLRQQLDDA 240 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 7777666666566666665444455666777776666669999999999999999984444444 444333322
Q ss_pred HHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 515 ESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 515 E~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
... -..|+.++-+|..+ +-++|.+|+.+.+ .|...+.++||.|..+|...+
T Consensus 241 ~~K----~~~kek~ViniQ~~---f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 241 HNK----ADNKEKTVINIQDQ---FQDIVKKLQAESE---KQVLLLEERNKELINECNHLK 291 (305)
T ss_pred HHH----HHHHHHHHhhHHHH---HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 111 11244455555544 5678888877764 477888899999988887543
No 90
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.57 E-value=13 Score=40.32 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=98.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhH----HHHHHHhHHHHHh
Q 006170 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (658)
Q Consensus 244 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKL~~~~eqL~ 319 (658)
|+-||-.-.|-+..||-.++++.-|+..|-+=. ++=|+..-||.-+.+|+.| |+.|+..-.-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 444555556778889999999999998875432 3457778888889999988 6666666555555
Q ss_pred hhhHH-HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006170 320 AKDMV-LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (658)
Q Consensus 320 ~k~~~-lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesK 398 (658)
..... -++|... ++-+.+|..++..+=+.|++--.-|.++.-.+..++.++..|+...+.=+.++.+.-.+-+..+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 43222 2344433 555555555555555555555555666666666667777788888877777777777777766666
Q ss_pred HHHHhh
Q 006170 399 VTQLTD 404 (658)
Q Consensus 399 le~LSe 404 (658)
+.++--
T Consensus 223 L~Qlqs 228 (305)
T PF14915_consen 223 LSQLQS 228 (305)
T ss_pred HHHHHH
Confidence 665543
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.48 E-value=0.77 Score=54.07 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhh
Q 006170 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (658)
Q Consensus 431 E~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~ 510 (658)
+.|+++.. +++.-+....+..++...+|+.++++-..+. .+ ++.=+..+..+.-.||+...+.-+||.-++.+
T Consensus 575 e~Ql~~L~-~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~---~R---~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 575 EQQLKELQ-ELQEERKSLRESAEKLAERYEEAKDKQEKLM---KR---VDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 44555543 3444343333333333336666666654444 22 22222334445566888888999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCC
Q 006170 511 IKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (658)
Q Consensus 511 lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~ 576 (658)
++.|.++++++..+.+.--..++.+++.-...+.==....+++.+-|....++.+.+..++++.++
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987776654333333332222222112233444444444444444444444444443
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.48 E-value=19 Score=42.04 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHH----hHHHHhh---HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRA----NIEKAAS---AKE-----VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA----~q~ke~t---lKe-----ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (658)
..-++++.++..++.++.-+..- .+-+..| =|+ --.|.--|-..|.|-..+++++-.+.-.+.++.+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776655433322 2222222 112 12233344556777788889999999999999999
Q ss_pred HHHHHhhc
Q 006170 567 LVEKLQYS 574 (658)
Q Consensus 567 L~ekLd~~ 574 (658)
+.++|+-+
T Consensus 524 l~gkL~Rt 531 (594)
T PF05667_consen 524 LTGKLDRT 531 (594)
T ss_pred HHHHHHhH
Confidence 99999854
No 93
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.41 E-value=24 Score=42.91 Aligned_cols=278 Identities=18% Similarity=0.200 Sum_probs=134.8
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (658)
-||-.|-+-..-...|..++.-.|-++..|-++...+-.-+-+++--+|-+.. |+...+-.|+|-..-=--+-
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHH
Confidence 34555555566667777777777777777777766655555555544443333 22222222322211000011
Q ss_pred HHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---h---HHHHHhHHHHHHHHH
Q 006170 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT---S---QEQLNEMDNFIESLK 382 (658)
Q Consensus 309 sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe---s---E~EVaaLerrIelLK 382 (658)
.-|...-+.|...+..++.+.+...++...+..|++.+-+.+..-....+.....-+. . +-++++--....-++
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~r 248 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLR 248 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence 1122233333333333332222224445555555555544443322221111000000 0 112223333333344
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHH--HHHhhhHH
Q 006170 383 ESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ--EQQSMLYS 460 (658)
Q Consensus 383 Eel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~--eqQ~mkys 460 (658)
-..++-+++-. .+.-.|+++.+.+..|+-..+.-.+-...-|-.+|+.+.-|+.-+.+...++ -.|.-+|-
T Consensus 249 k~~s~i~E~d~-------~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkyl 321 (1265)
T KOG0976|consen 249 KTCSMIEEQDM-------DLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYL 321 (1265)
T ss_pred hhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44444444333 3444455555544444433322222234445556666555555555444443 34677888
Q ss_pred HHHhHH--HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006170 461 AIWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (658)
Q Consensus 461 eisdme--~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~ 527 (658)
....|. .-+-|++-.|..|.-.+|++-.|.- +|+.+=....-++-++...+.-....+-+
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e~k~nve~elqs 383 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQEKKENVEEELQS 383 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777777 3455677777777777777777777 88877777777777766555444433333
No 94
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.13 E-value=25 Score=42.36 Aligned_cols=24 Identities=25% Similarity=0.172 Sum_probs=9.4
Q ss_pred HHHHHHHHhccchHHHHhhhhHHH
Q 006170 263 EVVWGRFLEAENSAEVLMGISKEM 286 (658)
Q Consensus 263 ~~~~er~~EAENa~EvL~g~skel 286 (658)
..+-.++.+..|-.+-+...+...
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~ 429 (908)
T COG0419 406 EEIQEELEELEKELEELERELEEL 429 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333333
No 95
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.90 E-value=1.3 Score=45.84 Aligned_cols=123 Identities=28% Similarity=0.344 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh
Q 006170 347 EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (658)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK 426 (658)
|...+++..+|.........+...+..-+.++..|.++...|+.-+..-+.+-..+...+..|...-... ..+|
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~------~eEk 77 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ------EEEK 77 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3334444444444444444445555566777888888888888777666665555555555544432211 1233
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (658)
..|+.++.++. ..+ .+ +-.++.+++.-.+.|+.++..|....+.+-.+.
T Consensus 78 -~~Le~e~~e~~-------~~i---~~----l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 78 -EQLEQELREAE-------AEI---AR----LEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ----HHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765 111 11 344566666667777777777765544444443
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.81 E-value=24 Score=41.40 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=85.2
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHH
Q 006170 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (658)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksL 346 (658)
+.+.|-.|+.-.|.+.--++-.+||+-|+--+....+=+++..||.... ++++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~----------e~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK----------EKLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHh-hhHHHHHHHHHHHHH
Confidence 4445555555555555555555555555443332222233333333333 34444 367888888877777
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 347 EEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les 418 (658)
-.+|..|....+......++... -+..|.+--.--+..+..+-.-++.+...++.++.-|.+|...+..+-.
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 77777776666555555444321 2345555444555667778888889999999999999999998875433
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.66 E-value=0.053 Score=62.80 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (658)
+.+.+...+..|++++.+.+.-......+|+.+.....+|..+...|...+ +.+..|--.+-+++ ..
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR-------~~-- 306 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELR-------EK-- 306 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-------HH--
Confidence 344556666666666666666555556666555555555554444443322 12222222222222 11
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhh---hhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006170 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (658)
Q Consensus 450 as~eqQ~mkyseisdme~vIEdLk~Kl~r---AE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke 526 (658)
-+.+.++++.|+-.|.|+.- -..|.+..+.++..|=+++..|+++|+-++..- ..++.+...
T Consensus 307 ---------a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~----~qle~~k~q-- 371 (713)
T PF05622_consen 307 ---------ADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALK----SQLEEYKKQ-- 371 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHH--
Confidence 11122233333333333221 123344556667777777888888887654422 222222111
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 006170 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (658)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~e 569 (658)
+.+++.+......-+.+|..++.+|+..+..+..+...+..
T Consensus 372 --i~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 372 --IQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp -------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333444445555555555555554444444433
No 98
>PLN02939 transferase, transferring glycosyl groups
Probab=92.50 E-value=23 Score=43.80 Aligned_cols=156 Identities=25% Similarity=0.374 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhh--hhh-------------------------HHHHHhHHHHHHHHHHHHHhh
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNAN-ACF--QTS-------------------------QEQLNEMDNFIESLKESLYGA 388 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~-akl--Ees-------------------------E~EVaaLerrIelLKEel~rA 388 (658)
-.||.|+..||-.|.+++.++.-+. ++. +-. -.++..+...+-.||+++.--
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3788899999988888877765332 111 000 114444445555555554322
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh-hHhHHHHHhhhHHHHHhHHH
Q 006170 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS-SEASQEQQSMLYSAIWDMET 467 (658)
Q Consensus 389 EsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as-aEas~eqQ~mkyseisdme~ 467 (658)
. ......++..+.---+++++..|++ .|++.+..+--|.+- ++-+-. +|+..|.+
T Consensus 246 ~----~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 301 (977)
T PLN02939 246 K----AELIEVAETEERVFKLEKERSLLDA--------------SLRELESKFIVAQEDVSKLSPL----QYDCWWEK-- 301 (977)
T ss_pred H----HHHHHHHhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhhccch----hHHHHHHH--
Confidence 1 1122233333444445555555554 344443222111111 111122 34544544
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
+|-|+.=+.+|-..+| +.+++...|- -++.++..||++|..|+..|-++
T Consensus 302 -~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 350 (977)
T PLN02939 302 -VENLQDLLDRATNQVE----KAALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSS 350 (977)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHhccch-------HHHHHHHHHHHHHHHhhHhhhhH
Confidence 3334444445554433 3455566666 56789999999999999988755
No 99
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.38 E-value=11 Score=37.38 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=8.1
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 006170 502 NKQSFMRDKIKILESSLNRA 521 (658)
Q Consensus 502 EEL~~l~s~lksLE~sl~kA 521 (658)
..+.-++.++..+|.....+
T Consensus 165 ~~~er~e~ki~~~ea~a~a~ 184 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAEAS 184 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 100
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.34 E-value=18 Score=41.22 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=5.1
Q ss_pred ccccccccc
Q 006170 589 DDKELLINP 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
|.-+|+|.+
T Consensus 420 d~v~f~~~~ 428 (563)
T TIGR00634 420 DQVEFLFSA 428 (563)
T ss_pred eEEEEEEec
Confidence 345677754
No 101
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.28 E-value=6.9 Score=39.50 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
+.+||+||..||-+-..++..+.......-.. +.+..+=++....+-..--.-.+.+..|+++|..|.+ +|+-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK---QLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEK---QLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56899999999988777777765432221111 1122222222222222222334566667777777765 4555
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
+++.+++- +.||-..+|+|..--+ -+ -.-..+++++++ +++..|..|.
T Consensus 83 MRkmv~~a---e~er~~~le~q~~l~~-----e~--------------------~~~~~~~~~kle----kLe~LE~E~~ 130 (178)
T PF14073_consen 83 MRKMVESA---EKERNAVLEQQVSLQR-----ER--------------------QQDQSELQAKLE----KLEKLEKEYL 130 (178)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHH-----Hh--------------------ccchhhHHHHHH----HHHHHHHHHH
Confidence 55555552 3356666666543111 00 011223344444 3346677788
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006170 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (658)
Q Consensus 492 ~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~ 522 (658)
.|.--=++-..+++.||.+|..-.
T Consensus 131 -------rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 131 -------RLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555688889999988876543
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.81 E-value=30 Score=40.15 Aligned_cols=123 Identities=12% Similarity=0.234 Sum_probs=55.3
Q ss_pred HHHhccchHHHHhhhhHHHHh--hhhHHhhhccccccch-hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHH
Q 006170 268 RFLEAENSAEVLMGISKEMLG--RFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (658)
Q Consensus 268 r~~EAENa~EvL~g~skel~g--kLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvk 344 (658)
.+++.++..++|....+.+.| .+.....+|.....|- ++. .......+++..+..+..+. .+...+..++.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--~~~~~~~~~~~le~el~~l~----~~~e~l~~~i~ 233 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--LPSSILSEIEALEAELKEQS----EKYEDLAQEIA 233 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 366778888877766666654 3445566666543321 111 01112222222222222211 12223333333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 345 SLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
.++.+++..+.++..+...+... ..+...++..+..++.++.+++.++....
T Consensus 234 ~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333322221 33455667777777777766666665443
No 103
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.77 E-value=20 Score=37.94 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceeccC
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~~ 585 (658)
+..++..++.++.....+...+...++.+...+|++-++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~ 283 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEE
Confidence 3345556666666667677777777888888888776553
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.74 E-value=9.9 Score=40.57 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 006170 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (658)
Q Consensus 252 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (658)
...|.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+.
T Consensus 125 ~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556777777775 677888888888888888888766655544443
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.61 E-value=18 Score=37.09 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHH
Q 006170 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (658)
Q Consensus 388 AEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~ 467 (658)
+-.|+..--.||....++.++.+..+. +.+..|.+|++-.. ||...+.+-++.-..+...++-.+.
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~----------~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE 81 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLA----------EEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEE 81 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655 34556666777554 4444444444322224444444444
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL 514 (658)
.=--|.......|...-+...++..|-+.|-.|..|..-+..+.+.|
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33334444445566666777777777788877777777777777766
No 106
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.54 E-value=35 Score=40.30 Aligned_cols=402 Identities=19% Similarity=0.194 Sum_probs=185.9
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhh
Q 006170 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (658)
Q Consensus 92 ~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qs 171 (658)
.-|-|-|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|-.+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hhhhhhh----hhcccCCCcccccccccCCccccccccccc-chHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHh
Q 006170 172 AKFQRVL----SYFIHGNNDEALEFSANGQLSNINGKSKMK-NADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKL 246 (658)
Q Consensus 172 a~f~r~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~mq-t~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~ 246 (658)
--=+.+| ..+..-+.... + ..+ -.+-..+.+ ..++.|...+-||+--+.=.|++++=. ....|+.
T Consensus 83 k~aE~afl~vye~L~eaPDP~p--l-l~s---a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~----~v~~l~e 152 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVP--L-LAS---AAELLNKQQKASEENEELKEELEEVNNELADLKTQQV----TVRNLKE 152 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCch--H-HHH---HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHH----HHHhHHH
Confidence 4333332 22222222111 0 000 011111111 345556666666655444444443322 3344555
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHH
Q 006170 247 KLHHTEQV-AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (658)
Q Consensus 247 kL~~~eqe-~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (658)
++...++. .-+.+.++...|+..- .|..+...| +++..+..+-.+..+...=+.+.+.++..--+|....+..
T Consensus 153 ~l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 153 RLRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 55444433 2345556666666542 233333332 3333333333333222222222222222222222111110
Q ss_pred HHhhcC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHHHHHHhhhh
Q 006170 326 QKLEST-------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAES 390 (658)
Q Consensus 326 ekl~~s-------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKEel~rAEs 390 (658)
+.=... --.++-.-+.++-.+|.+......|+..++.+.... ...+..+++.|..|=.+|.+=++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000000 123344445555555666555555555555544332 33444566777766666665544
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006170 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (658)
Q Consensus 391 Ra~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE 470 (658)
-+.....+... -+..||++++....-|+.-+.-... |+ -|++|+.-+.+..
T Consensus 307 S~~~e~e~~~~------------------------qI~~le~~l~~~~~~leel~~kL~~----~s-DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKA------------------------QISALEKELKAKISELEELKEKLNS----RS-DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh----hc-cHHHHHHHHHHHH
Confidence 43333322111 1223333333332111111111111 12 5888988887766
Q ss_pred HHhh-hhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHH
Q 006170 471 DLKS-KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQ 549 (658)
Q Consensus 471 dLk~-Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~E 549 (658)
...= ....|...-+.+..==..|-+.|..|..|++.||...-.+..-..++..+ ..+....+...++++.+|+.-
T Consensus 358 ~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~----~~el~~~~~~~ke~i~klE~d 433 (629)
T KOG0963|consen 358 AIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKK----GEELEAKATEQKELIAKLEQD 433 (629)
T ss_pred HhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhh----hhhhHHHHHHHHHHHHHHHhh
Confidence 3221 11222222122222234667999999999999976655444422222221 333444455566666666544
Q ss_pred H
Q 006170 550 R 550 (658)
Q Consensus 550 r 550 (658)
.
T Consensus 434 l 434 (629)
T KOG0963|consen 434 L 434 (629)
T ss_pred H
Confidence 3
No 107
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.44 E-value=0.11 Score=60.37 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhH
Q 006170 372 NEMDNFIESLKESLYGA-ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (658)
Q Consensus 372 aaLerrIelLKEel~rA-EsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (658)
.-|++.++.|+..+..+ .+++......+..+...... |+.......+++..|+.|+.+....|+....-++
T Consensus 462 ~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~-------Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~ 533 (713)
T PF05622_consen 462 LRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEK-------LEEENREANEKILELQSQLEELQKSLQEQGSKSE 533 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444444443333 23333333344444433333 3333333345677777777766655544443343
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.43 E-value=19 Score=36.96 Aligned_cols=144 Identities=24% Similarity=0.279 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL-------YGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel-------~rAEsRa~tAesKle~LSeT 405 (658)
++....|...+..|.++++..+--++.|++ -..++.+|......|++.- ...|.-.++-.++...|-+-
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Qqal~~aK~----l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQQALQKAKA----LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777766544444422 1333333333333333332 22233333344444455555
Q ss_pred hHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006170 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (658)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE 480 (658)
|-.+..+++-+..+.-.-..+-..|=+|+.+++.=+-+-.+++...-.+...+...|...-.++++|+.+.+|-|
T Consensus 111 n~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 111 NGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555543211223344555565555333333444444444445555556666666666666655444
No 109
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.42 E-value=32 Score=39.70 Aligned_cols=327 Identities=19% Similarity=0.222 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHHHHhh--------hhhhhHHhhHHHhhhHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhccchH
Q 006170 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSA 276 (658)
Q Consensus 209 t~eqqR~iLrMLekSlA--------~EldLEKkL~es~~~eeeLk~kL~~~eq----e~~~lEE~~~~~~er~~EAENa~ 276 (658)
|.+||---=+|.||.|- +=|+++-.-.. .++||+......-+ +...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~---~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEP---SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777444567777653 34455443332 46677766654444 33445556667777777777666
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006170 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (658)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (658)
+-. +.+-.|-..++.|+|-..--++-+++|-+.-.-.++.-..++++ +++|+..|+.+...|-.|+..-...
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 533 56667777777777655555555555544333222222222222 5788888888888888777764333
Q ss_pred HH---HhHhhhhhhHHHHHhHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC--------
Q 006170 357 LQ---NANACFQTSQEQLNEMDNFIES----LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-------- 421 (658)
Q Consensus 357 L~---~A~aklEesE~EVaaLerrIel----LKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~-------- 421 (658)
.. ..++.-+..--++.-++-.+.. +++.=..|+.++.+.+-++-.+-..++++.+-+..+...+.
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 22 2222222211123333333332 33444567788888888887777777777765444433321
Q ss_pred --------CcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHh--h-hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 006170 422 --------SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (658)
Q Consensus 422 --------~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--m-kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc 490 (658)
.-.+++.-++..|... +| +.....|+ . +-..+..+.+.|-+|...+..-|.|+-.|=++|
T Consensus 447 E~~~~~~sg~~~~I~~~i~eln~~-i~--------~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 447 EQLFPKGSGINESIKKSILELNDE-IQ--------ERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred ccCCccccCchHhHHHHHHHHhHH-HH--------HHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144555555555432 11 11112222 1 445778888999999999999999999999999
Q ss_pred hhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHh
Q 006170 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK----LMMEMVMQLATQRELIQKQVY 558 (658)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak----~aE~lV~KL~~ErdrLedQL~ 558 (658)
-++-++|. +|+..-+..+.-||..+.+.+-.--...=+++.|-. .+.++.--+...|..++.|+.
T Consensus 518 ~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~ 586 (622)
T COG5185 518 ELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVI 586 (622)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98888775 677777777788888777766544333333333311 123333344445555555543
No 110
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.35 E-value=40 Score=40.72 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=68.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
+.++-.|+..-..|+..+.++...++....++.++.....++..++..++... ...|.||+-.+ .+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~-------e~ 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMK-------ES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HH
Confidence 45666667677777777777777777777777777777777777777665542 33444444332 11
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhh
Q 006170 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (658)
Q Consensus 448 aEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~ 510 (658)
-+..+-+-...-.++..+-.-|.-|..++.+-...-+-++.||. +|+++|......
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~-------~Le~el~r~~~~ 716 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR-------ELEEELERMKKE 716 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH-------HHHHHHHhhhcc
Confidence 11111111111122223333333344555544444455678898 899988887543
No 111
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.29 E-value=20 Score=36.99 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-----------
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD----------- 404 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe----------- 404 (658)
+..+.+.+..|+.+++....+...+..+..........+-.+-++|...+.+-...+.....+...+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 444555566666666666666665555544433334444444444444444444444444444433333
Q ss_pred -hhHHHHHHhhhhhcCCC
Q 006170 405 -TNLELSEEINFLKGNND 421 (658)
Q Consensus 405 -TNdELerelk~Lesrs~ 421 (658)
.-.|..+.+..+++|.+
T Consensus 127 ~~l~ea~~mL~emr~r~f 144 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDF 144 (264)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 33444555666666543
No 112
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.10 E-value=51 Score=41.42 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=23.8
Q ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006170 493 LSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (658)
Q Consensus 493 Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q 523 (658)
+.+.|.+|.++|.....++..+-.+..++.+
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~ 293 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAAS 293 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477999999999999999988555555443
No 113
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.36 E-value=43 Score=39.32 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006170 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (658)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (658)
+++++++..+...+.+...|+.|+++....+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544443
No 114
>PLN03188 kinesin-12 family protein; Provisional
Probab=90.31 E-value=63 Score=41.15 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=80.8
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006170 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (658)
Q Consensus 453 eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~ 527 (658)
++.+.+...=+++-.-|.|.|--.+||=-| .+|++-+ =||---.|=+.|-++++..=|+|+.+|--.-+.--+
T Consensus 1121 ek~~~ll~~hr~i~egi~dvkkaaakag~k--g~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1121 EKHIQLLARHRRIQEGIDDVKKAAARAGVR--GAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 434444445556666677777776666544 7777776 011112233444455555578999988655554444
Q ss_pred h------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 528 S------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 528 t------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
. +|||+--+.++++--+..+.|-+++..||-.+|.++..=...+++
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 899999999999999999999999999999999999554444444
No 115
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.30 E-value=47 Score=39.72 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=88.8
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh----hHHHHHhhcC---ChhHHHHHHHHHHHHHHH
Q 006170 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLEST---KNSEVLTMKEKVKSLEEQ 349 (658)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~lekl~~s---~esEv~sLqkKvksLE~q 349 (658)
+-+.|-...++..+.-.+++.++--.+|.+++--+...+-++... +..+-++... .+.++..+.--+..++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999888777777666542 1122122111 234444444445555566
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006170 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE------SAEEKVTQLTDTNLELSEEINFLKGNN 420 (658)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~------tAesKle~LSeTNdELerelk~Lesrs 420 (658)
++..-.|+....-+.-+ ...++++-+-.+......++..++-.. .-.+.++.+..++.+...+++.++.+.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66555555544433322 244555666666666666666643322 234556677777777777777776653
No 116
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=90.01 E-value=23 Score=35.76 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHhhhhHHHHHHh
Q 006170 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR-----AESAEEKVTQLTDTNLELSEEI 413 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR-----a~tAesKle~LSeTNdELerel 413 (658)
|.--+..++++|.+....+..+.+.--..+.++...+..++..+.....|=.+ +-.|..+-....+++..++..+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555554444434445555555555555544443221 2223333333444444444444
Q ss_pred hhhhc
Q 006170 414 NFLKG 418 (658)
Q Consensus 414 k~Les 418 (658)
..++.
T Consensus 109 ~~~~~ 113 (219)
T TIGR02977 109 AAVEE 113 (219)
T ss_pred HHHHH
Confidence 44433
No 117
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.96 E-value=47 Score=39.16 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC----ChhHH-HHHHHHHH
Q 006170 270 LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEV-LTMKEKVK 344 (658)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~esEv-~sLqkKvk 344 (658)
+|-++.++-|.|..--+..|++.+--.++-...+.....++....+.+|..-...+...... ..+++ ..|+..+.
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~ 90 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHH
Confidence 45566777888888777777777666666555555555554444444443322222211111 12333 35666666
Q ss_pred HHHHHHHHHHHHHHHhHhh---h----hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006170 345 SLEEQLKESEIRLQNANAC---F----QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (658)
Q Consensus 345 sLE~qLdes~eQL~~A~ak---l----EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe 404 (658)
.|-+++.....+++.-... + .+.++.++.++++++.+++......+.+++..+...-++.
T Consensus 91 ~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 6666666655555432111 1 2235567777777777777665555555554444444443
No 118
>PRK10869 recombination and repair protein; Provisional
Probab=89.68 E-value=44 Score=38.47 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=11.8
Q ss_pred cchhhhhHHHHHHHHH
Q 006170 423 NTKKVGILENQLRDLE 438 (658)
Q Consensus 423 deEK~~~LE~QLKEa~ 438 (658)
|.++++.+|..|-...
T Consensus 294 dp~~l~~ie~Rl~~l~ 309 (553)
T PRK10869 294 DPNRLAELEQRLSKQI 309 (553)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6778888888776655
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.22 E-value=37 Score=36.91 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHhhcCC
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~~~~ 576 (658)
.+.+..+|+.++-....-|..+..++++++.
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888877653
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.94 E-value=24 Score=34.38 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=43.0
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
+++--++.+..-.+++..||+.|.-+...++++..=+|.+.. +|+.|+.+++..-+.....+.-..
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556666666666665555555555554443 222233333322222223333344
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHH
Q 006170 492 VLSEDNFELKNKQSFMRDKIKILESS 517 (658)
Q Consensus 492 ~Lse~N~ELeEEL~~l~s~lksLE~s 517 (658)
.|+..+-.|..+|.-..+++..||..
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555443
No 121
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.92 E-value=61 Score=39.07 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=65.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcc--hhhhhHHHHHHHHHHHHHHhH
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT--KKVGILENQLRDLEIQLQQAK 445 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~de--EK~~~LE~QLKEa~~QLqhA~ 445 (658)
.+-|--|+....-.++.+.+...+++.-++++.-+..|||+....+- .++|.-.|+ ++-..|=.|+-+.+.-|+.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999999999999999999999999877331 233321111 122333344444443333332
Q ss_pred hhhHhHHHHHhhhHHHHHhHH----HHHHHHhhhhhhhhhhhhhh
Q 006170 446 VSSEASQEQQSMLYSAIWDME----TLIEDLKSKVSKAESKTESV 486 (658)
Q Consensus 446 asaEas~eqQ~mkyseisdme----~vIEdLk~Kl~rAE~RaE~a 486 (658)
.. ++|.+ .=|+||+-.+.-||-|++..
T Consensus 601 q~--------------aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 601 QQ--------------AARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22322 45788888888888885543
No 122
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.83 E-value=12 Score=35.39 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=16.4
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
+.+++.++..-++-|+..+.+.+++.+.++.++.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544444444444
No 123
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.46 E-value=36 Score=36.26 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH-----
Q 006170 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME----- 466 (658)
Q Consensus 392 a~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme----- 466 (658)
++.....|..|+++|.+|-+.+-..+..+. .++..| -+|-..|-.+.+.+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~l----------------------Lqqy~~~~~~i~~le~~~~ 62 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKL----------------------LQQYDIYRTAIDILEYSNH 62 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHH----------------------HHHHHHHHHHHHHHHccCh
Confidence 344556677777777777777766555431 222111 12222455555444
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006170 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (658)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (658)
.-+++++++|...+++ .|++.. .|..++..+..+++.....++-..--++ +|--.|+=-|-.++.+|
T Consensus 63 ~~l~~ak~eLqe~eek---~e~~l~-------~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEK---EESKLS-------KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Confidence 3466667777766644 556677 7777777777777766666666655555 67777777788899999
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
+.-.|+-++++-.+.+-.+..-.++-
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99899999988888777776655554
No 124
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.42 E-value=76 Score=39.55 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN------EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa------aLerrIelLKEel~rAEsRa~tAesKle~LSeTNd 407 (658)
.|+..|+++-++||+.++.....++.-....+..+..|. .....|+.|+.+..--+ ...-..+....-++-+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~--y~~~~~ey~~~k~~~~ 258 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE--YKKHDREYNAYKQAKD 258 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hHhhhHHHHHHHHHHH
Q ss_pred HHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh
Q 006170 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (658)
Q Consensus 408 ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aE 487 (658)
-+..+++.|.-....=+.+...||++.++...+.-.+....-++.++-..+++.+.++..-++.++.+++-...+++.-.
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq 338 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ 338 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
..+. ..+--+-.+++-+..+.--+.-+.++.+.++++...--.++-..++-....-......+...
T Consensus 339 ~~i~--------------~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~ 404 (1072)
T KOG0979|consen 339 KRIE--------------KAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLE 404 (1072)
T ss_pred HHHH--------------HHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q ss_pred HHH
Q 006170 568 VEK 570 (658)
Q Consensus 568 ~ek 570 (658)
+-+
T Consensus 405 ~~k 407 (1072)
T KOG0979|consen 405 NKK 407 (1072)
T ss_pred HHH
No 125
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.32 E-value=51 Score=37.69 Aligned_cols=163 Identities=20% Similarity=0.197 Sum_probs=100.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
-.+...|.+|.-.|+|.+-+.|-|+..+.+.=+ .|-+. +..+ -+|...||+..-..+.| +.
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~---------rrhrE-il~k----~eReasle~Enlqmr~q-----ql 309 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEE---------RRHRE-ILIK----KEREASLEKENLQMRDQ-----QL 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------HHHHH-HHHH----HHHHHHHHHHHHHHHHH-----HH
Confidence 457889999999999999999988877654321 11111 1111 14555666655555433 33
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 006170 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (658)
Q Consensus 448 aEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~ 527 (658)
.+.+-+ +.+.++|.-..++.|-++..|...++|.+-.+++ ..-+.=.-+..+| -+..++|.+
T Consensus 310 eeente----lRs~~arlksl~dklaee~qr~sd~LE~lrlql~-------~eq~l~~rm~d~L-------rrfq~ekea 371 (502)
T KOG0982|consen 310 EEENTE----LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI-------CEQKLRVRMNDIL-------RRFQEEKEA 371 (502)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHhhHH
Confidence 445555 8899999999999999998888888888887777 3322222233333 334455555
Q ss_pred hHHHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 528 SAKEVNHRTKLMMEMVMQLAT------------------QRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~------------------ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
|. ++|+++..+|+. ...-|+..+-.++.+|..|.+..++.
T Consensus 372 tq-------ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneel 429 (502)
T KOG0982|consen 372 TQ-------ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEEL 429 (502)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 52 333444333322 23446777778888888887666543
No 126
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.13 E-value=27 Score=42.02 Aligned_cols=123 Identities=25% Similarity=0.259 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhh
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (658)
-.+.+..+.--|.|..+|.....-...-||+++.++.-=..---..++|..+|-.+|.-++.+|+++-. +++.-+
T Consensus 65 k~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe---- 139 (916)
T KOG0249|consen 65 KEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE---- 139 (916)
T ss_pred hcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh----
Confidence 344555666667777777777778888899998876522221112356777777777777777777666 554433
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHH
Q 006170 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (658)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lk 512 (658)
.-+++.+-.. .+.+|+.+-...|..+.-|-..|-+++.||.-.+.+++
T Consensus 140 veael~qr~~-------al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 140 VEAELAQRNA-------ALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hHHHHHHHHH-------HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111 12233333333344444444444467777766666655
No 127
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.09 E-value=27 Score=35.32 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=72.6
Q ss_pred hHHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------
Q 006170 458 LYSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------- 528 (658)
Q Consensus 458 kyseisd-me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t-------- 528 (658)
-|..|.+ =+.+|.-||.++.--..+.+..+.-..-++..|..|.+-|...+..+..|...+..+..-|.+.
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3665544 4588899999988888888888888888999999999999999999999999998877666543
Q ss_pred -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006170 529 -----AKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (658)
Q Consensus 529 -----lKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (658)
++++.--.++.+.-+.|+..|||.|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.04 E-value=23 Score=33.18 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 500 LeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
.-++|..++..+..+..........-+..-..+.....-.+.--..|..+++.++..+--+..-|++|.+.++.
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444333343344444455566677777777777777888888887764
No 129
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.97 E-value=77 Score=39.06 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
+++++....|++-+..|++.|....++.+-+..+.+++++.+|+++..=...=.....|..+.
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888889999999999999999888888888999999999988877665555555554443
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.14 E-value=46 Score=35.61 Aligned_cols=62 Identities=23% Similarity=0.230 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
.++.++..+-.....+|..+. ++.....--.+++.+|+..-...+.+...+. +-+.++....
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~-----------~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~a 227 (265)
T COG3883 166 ALEDKLETLVALQNELETQLN-----------SLNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAAA 227 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 455555555555555555543 3344444455667777777777777776666 4445444443
No 131
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.99 E-value=71 Score=37.59 Aligned_cols=38 Identities=5% Similarity=0.106 Sum_probs=21.2
Q ss_pred HHhHHHHhhHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH
Q 006170 520 RANIEKAASAKEVNHRTKLMMEMV---MQLATQRELIQKQV 557 (658)
Q Consensus 520 kA~q~ke~tlKeae~Rak~aE~lV---~KL~~ErdrLedQL 557 (658)
.|-.|=.+..|-|....+-|.+.+ ..|++|+..|..++
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444666666655555543 35666666666554
No 132
>PLN02939 transferase, transferring glycosyl groups
Probab=86.68 E-value=77 Score=39.44 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=37.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
.|+-|+.|+...|+|. -.++.|+.-++..|...++..+..+.+...+-.+.
T Consensus 352 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (977)
T PLN02939 352 KVELLQQKLKLLEERL----------QASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402 (977)
T ss_pred HHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3466777777777773 34556778888999999999999988876665553
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.58 E-value=39 Score=34.23 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Q 006170 469 IEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
.++|..+|+.++.+++..+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666
No 134
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=86.45 E-value=1.1e+02 Score=39.18 Aligned_cols=125 Identities=14% Similarity=0.242 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-LQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ-L~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
...|..++++++.-...|+.+... .+.+..+....+.|... +......+-....++..+.+.+..+..++.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555544432 12333333444444442 222222222336677788888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-CcchhhhhHHHHHHHHHHH
Q 006170 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-SNTKKVGILENQLRDLEIQ 440 (658)
Q Consensus 387 rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~-~deEK~~~LE~QLKEa~~Q 440 (658)
+++.+...++.++..+...-.++..++..|++... .+-+.+..++.|++....+
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~ 348 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAA 348 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877632 1123334444555544433
No 135
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.20 E-value=49 Score=35.01 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=6.5
Q ss_pred HHHHHHHhhhhhhhhh
Q 006170 466 ETLIEDLKSKVSKAES 481 (658)
Q Consensus 466 e~vIEdLk~Kl~rAE~ 481 (658)
..-+.+++.++..++.
T Consensus 252 ~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 252 QARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 136
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.19 E-value=1e+02 Score=38.71 Aligned_cols=77 Identities=22% Similarity=0.157 Sum_probs=55.2
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchh
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (658)
+||..|.-++--.+.++..|..-++|...++......-.++.+-.--.+..-|.-++|..|.+.++...=..++|.-
T Consensus 687 ~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 687 GLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46666766666677777888888888888888877777777665556666677777788887777776665555543
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=86.14 E-value=88 Score=37.89 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=41.7
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 006170 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (658)
Q Consensus 52 ~la~~SEKl~NL--~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDl---L~gildsEv~ele~~~~~lq~~I~ 124 (658)
|+...=+.++.| .+|..-+.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-...++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887765554432344555555555 333333444555555555555554
No 138
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.39 E-value=74 Score=36.30 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=99.8
Q ss_pred HHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 006170 399 VTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (658)
Q Consensus 399 le~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~r 478 (658)
+..++--...|++..+-|++..-.+-+| |=+-+.+.+--++.-+..--+-++|+..+-++|.-+.++..|++.=+-+
T Consensus 218 l~al~llv~tLee~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~ 294 (446)
T KOG4438|consen 218 LNALKLLVVTLEENANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKK 294 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 3334444555666667677765444444 3334555555566655555566677777888999999999999888777
Q ss_pred hhhhh---hhhhhhhhhcccchhhHHHHHHHHHhhH---HHHHHHHHHH---hHHHHhh---------------------
Q 006170 479 AESKT---ESVEEQCIVLSEDNFELKNKQSFMRDKI---KILESSLNRA---NIEKAAS--------------------- 528 (658)
Q Consensus 479 AE~Ra---E~aEsKc~~Lse~N~ELeEEL~~l~s~l---ksLE~sl~kA---~q~ke~t--------------------- 528 (658)
+.+-. ++.|.+.++| ..|++|+.........+ +-.|+...+. ..++.+.
T Consensus 295 i~~~~~e~d~~Et~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~ 373 (446)
T KOG4438|consen 295 ISSDGVEYDSLETKVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIE 373 (446)
T ss_pred HHHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77776 7788877754 56788877655433322 2222222222 2222222
Q ss_pred ------------HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhHHHHhhhHHHHH
Q 006170 529 ------------AKEVNHRTKLMMEMVM--QLATQRELIQKQVYSLTSENKLLVEK 570 (658)
Q Consensus 529 ------------lKeae~Rak~aE~lV~--KL~~ErdrLedQL~s~keenK~L~ek 570 (658)
.+.++.....+...=. +.+..|..++.|+.+...++-.+...
T Consensus 374 ~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 374 KYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred HhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 66788888888988888888776554
No 139
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.30 E-value=19 Score=38.80 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccc
Q 006170 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (658)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~R 303 (658)
-.|-+--=.|...|==|= ...+.|+-..+...+..++.|..-....
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666665553 3446677777777777766665444433
No 140
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.93 E-value=79 Score=36.24 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=11.9
Q ss_pred CcchhhhhHHHHHHHHH
Q 006170 422 SNTKKVGILENQLRDLE 438 (658)
Q Consensus 422 ~deEK~~~LE~QLKEa~ 438 (658)
.|.++++.++.+|-..+
T Consensus 298 ~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 298 FDPERLNEIEERLAQIK 314 (563)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36677888888776554
No 141
>PRK10698 phage shock protein PspA; Provisional
Probab=84.43 E-value=52 Score=33.75 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.3
Q ss_pred hhhhhhhhhhhhh
Q 006170 474 SKVSKAESKTESV 486 (658)
Q Consensus 474 ~Kl~rAE~RaE~a 486 (658)
.|+.+.|.+++..
T Consensus 173 ~ki~~~Ea~aea~ 185 (222)
T PRK10698 173 RRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHhHh
Confidence 5666667666664
No 142
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.08 E-value=69 Score=34.86 Aligned_cols=46 Identities=4% Similarity=0.015 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 006170 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRE 551 (658)
Q Consensus 505 ~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~Erd 551 (658)
+.++..+..++............| ..+....++++.+-..|-..++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~-~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEM-SVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455554444 3344445555555555544443
No 143
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.82 E-value=40 Score=31.92 Aligned_cols=90 Identities=27% Similarity=0.324 Sum_probs=54.5
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHH
Q 006170 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (658)
Q Consensus 363 klEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (658)
.+-....++..+++.++-|++++..++..+..+..++..+......+...++ ..+.+++
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k---------------------~~kee~~ 118 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK---------------------QEKEELQ 118 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 3333466677777777777777777777777777777666655544444333 3333333
Q ss_pred HhHhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhh
Q 006170 443 QAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVS 477 (658)
Q Consensus 443 hA~asaEas~eqQ~mkys-eisdme~vIEdLk~Kl~ 477 (658)
..+..+..... .|. ++++++.-|+-||..+.
T Consensus 119 klk~~~~~~~t----q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 119 KLKNQLQQRKT----QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 33344433333 333 68888888888887764
No 144
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.98 E-value=76 Score=34.53 Aligned_cols=212 Identities=20% Similarity=0.282 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr 419 (658)
.+++..+=.+-|+.+.++....+.....-++-..++..|+.++++-..-=++++.-......+.+++++.+ +-++
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-----~~~~ 107 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-----LGGR 107 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccCC
Confidence 33333333344444444444433333334455566777777777776666666665555555555555443 2222
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhh
Q 006170 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE 499 (658)
Q Consensus 420 s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~E 499 (658)
+ +..+++-+...+.-.+-.+-.-+...+ +-..|+++....++-+..+...+...+.. +++- +
T Consensus 108 ~------~~~ler~i~~Le~~~~T~~L~~e~E~~----lvq~I~~L~k~le~~~k~~e~~~~~~el~-aei~-------~ 169 (294)
T COG1340 108 S------IKSLEREIERLEKKQQTSVLTPEEERE----LVQKIKELRKELEDAKKALEENEKLKELK-AEID-------E 169 (294)
T ss_pred C------HHHHHHHHHHHHHHHHhcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------H
Confidence 2 466677777666444444444444444 45556665555554444333333221111 1222 4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 500 LKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 500 LeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
+-.+.+-+.+++..|=...+.+...=-.+ +-++-.++..+-.-+.++...++.+|..+-....+++-+...+...
T Consensus 170 lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 170 LKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444433332222 5555666777888888889999999999999988888888777643
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.95 E-value=98 Score=35.77 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=110.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHH
Q 006170 246 LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (658)
Q Consensus 246 ~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (658)
-++..+++-.+-.|+.+ -+-||+.|-+...-+.-....+-+.++.+...|+.....|..-+.......+....-...+
T Consensus 75 ~~~~~ie~~L~~ae~~~--~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYA--DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555553 3568888888888888888888888888888888888777777777766666666533333
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006170 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-----NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (658)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~-----~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (658)
-.-..+=-+=+..|.+++..+|.+|.++..-.. .|..-+.....++..++..++.+-.=+.......-.- +.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~q---l~ 229 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQ---LE 229 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH---HH
Confidence 222222134456788888888888888877432 3444444445566666666666665555555444332 23
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006170 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (658)
Q Consensus 401 ~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (658)
++...=.++.++==.|..-. -.+.+..++.++.++...|
T Consensus 230 eL~~gy~~m~~~gy~l~~~~--i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 230 ELKEGYREMEEEGYYLEHLD--IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 33333333333211122111 1445556666666555444
No 146
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.38 E-value=62 Score=39.16 Aligned_cols=82 Identities=27% Similarity=0.302 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
++.++.-+.+|+.+|-.+|.-.+.+|+.+-. ++...+==+.+.+++. .+..|+++..+.++.+..+...+++++-
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~----al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA----ALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777776655 4444333344555554 4456777777777777777777777666
Q ss_pred Hhhhhhc
Q 006170 412 EINFLKG 418 (658)
Q Consensus 412 elk~Les 418 (658)
++--.+.
T Consensus 178 eL~rarq 184 (916)
T KOG0249|consen 178 ELQRARQ 184 (916)
T ss_pred HHHHHHH
Confidence 6654433
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.17 E-value=14 Score=37.62 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANA 362 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~a 362 (658)
++..++..+|.++.+...+|.++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555554443
No 148
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.79 E-value=52 Score=35.69 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhh
Q 006170 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVG 428 (658)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~ 428 (658)
||+..+..|+..+-+.+.-..+.++|.|.++.|=+ -|..+.++.+-+.-++.+=++ .++
T Consensus 40 QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e--------------~c~~lek~rqKlshdlq~Ke~-------qv~ 98 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEKNEYSALKRENQSLME--------------SCENLEKTRQKLSHDLQVKES-------QVN 98 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHHHHHHHHHHhhHHHhhhHH-------HHH
Confidence 34444444555555555555677888887776643 466677777777777765555 378
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 006170 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (658)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsK 489 (658)
.||+||--++. .+.+++.=+.-+|+.++|+..-+-++...
T Consensus 99 ~lEgQl~s~Kk---------------------qie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 99 FLEGQLNSCKK---------------------QIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 88888766652 24445555556678888887766666544
No 149
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.32 E-value=47 Score=32.21 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=3.7
Q ss_pred HHHhHHHHHh
Q 006170 310 KLGDFIEQLK 319 (658)
Q Consensus 310 KL~~~~eqL~ 319 (658)
++..+..++.
T Consensus 82 e~~~~~~~l~ 91 (191)
T PF04156_consen 82 ELSELQQQLQ 91 (191)
T ss_pred hHHhHHHHHH
Confidence 3333333333
No 150
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=1.6e+02 Score=37.02 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=69.4
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC----C------hhHHHHHHHHHHHHHH
Q 006170 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (658)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~------esEv~sLqkKvksLE~ 348 (658)
.-.+.++..+.|.-++-+-+.+..+=...++.+...++..+.-++.+-.|+.+ . ..+-....+|-..||-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888888877777776666666666665554444444433332 0 0111111222333333
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les 418 (658)
+.+..+.|+.-- .+.-...-+.++.+++++...+..+...+-|...+.+...-+..-+..|++
T Consensus 308 ~~kdlq~~i~~n-------~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 308 KIKDLQDQITGN-------EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred hhHHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 344333333221 111122334455566666666666666666666666666655555555555
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=81.08 E-value=1.7e+02 Score=37.42 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=18.6
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccc
Q 006170 99 DLLFGILDSELREVERLLDTIHVEIVNVHH 128 (658)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~ 128 (658)
|.-..=|+..+..++..+..+...+..+..
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~ 453 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDVADR 453 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665554444
No 152
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.77 E-value=50 Score=30.99 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=8.1
Q ss_pred HHhhhhhHHHHHHHHHHHhhh
Q 006170 385 LYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 385 l~rAEsRa~tAesKle~LSeT 405 (658)
...|+.+.+.-..+.....++
T Consensus 40 a~~Aq~~YE~El~~Ha~~~~~ 60 (132)
T PF07926_consen 40 AQEAQQKYERELVKHAEDIKE 60 (132)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 333444443333333333333
No 153
>PF14992 TMCO5: TMCO5 family
Probab=80.01 E-value=94 Score=33.65 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhhhcccchhhHHHHHHHHHh
Q 006170 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRD 509 (658)
Q Consensus 478 rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s 509 (658)
..+.+.+.+..-|+ .++.++.-+.+
T Consensus 113 ~sk~~lqql~~~~~-------~qE~ei~kve~ 137 (280)
T PF14992_consen 113 FSKNKLQQLLESCA-------SQEKEIAKVED 137 (280)
T ss_pred HhhhhHHHHHHHHH-------HHHHHHHHHHH
Confidence 33334444444455 66666666543
No 154
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.00 E-value=53 Score=35.12 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc
Q 006170 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (658)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (658)
..+-..|+++-...+-.++-+|+....-++.....+- +.+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3556678888888888888888888777765433221 1111111112233333333333332222222222
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006170 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (658)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS 403 (658)
...+.+..++.++..++.+++.-..++..... ..+++.....+.|+.++.-|+...+.+..+++++.
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23799999999999999999887766654321 12344444566777788888888888888777776
No 155
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.70 E-value=1.2e+02 Score=34.60 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=41.6
Q ss_pred HHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006170 316 EQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 316 eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (658)
.+|++-...+..+..+ ...+...|++-++++|.++.....++..+...+......|++++..++-|+..-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555544444 345556666666666666666666666666666666666666666666655544
No 156
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=79.62 E-value=75 Score=32.31 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=75.1
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
|.+|...++.|+ .|+.+...-|...-..|-.++.....|.......+.++..|...++..+..+..++..+..+..
T Consensus 62 L~GKq~iveqLe----~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLE----QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 3455555555555555555555555555555556778999999999999999999988888776
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhh
Q 006170 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (658)
Q Consensus 398 Kle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (658)
.+.+ ....|+.- ..|++.|.+||.+++.-++..+..+
T Consensus 138 el~e----------K~qLLeaA----k~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAE----------KTQLLEAA----KRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHH----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 32333321 2479999999999998887776444
No 157
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.59 E-value=74 Score=32.23 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (658)
++...|+.-+.++..++...+++-..-..|...|.+-++.++.+..+...+|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555554444345555555555555555555555543
No 158
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.34 E-value=14 Score=36.68 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=47.0
Q ss_pred HhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006170 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (658)
Q Consensus 287 ~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (658)
-.++-..+-+|..+-++=+++..+|.... .++..+..++...+..+......+.....++..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~------------------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELN------------------DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc------------------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554443 333344444555555555555555555455555
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
...++..++..|+.|.+++.--.-....++.|+..+.+-|.+|=.-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888888888888888888888888888877553
No 159
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.94 E-value=1.7e+02 Score=36.05 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerel 413 (658)
-|+.+|+.|+++|+..|-++...+..++.. |..+...+++.-.+++.-..|+..-..|+..|.---.+|+..+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~-------ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTE-------IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345577777777777766666665555444 4444444444444555555555556666666766666777766
Q ss_pred hhhhcCCCCcchhhhhHHH
Q 006170 414 NFLKGNNDSNTKKVGILEN 432 (658)
Q Consensus 414 k~Lesrs~~deEK~~~LE~ 432 (658)
+.-.....-++-+...|+.
T Consensus 517 kq~q~a~~~~~~~~s~L~a 535 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEA 535 (1118)
T ss_pred HHhhhhccCcchHHHHHHH
Confidence 6555443333344444444
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.89 E-value=52 Score=35.62 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
|..+++++.....++..+.+.+..+++++..-..+.+....+..++...-.++++.++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666666666666666666666666666666666666555555444
No 161
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.81 E-value=71 Score=33.29 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHH
Q 006170 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (658)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (658)
+|.-+.|++.+...++.+..|...+.....++..|..+++..+.- ...|+..-.++..-.+.-...+....+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee-------a~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE-------AEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555556666666666555442 2334444333332222222333333333
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 455 Q~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
+..+-.++......|..|.....+.+..++....+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777766666666554444444
No 162
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.57 E-value=43 Score=33.88 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=73.0
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006170 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (658)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (658)
+..-|+--=||......|=..|-+--.+...-++.++..=+++... +.+...+..++..||..+-+.+.+.+.....-+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444333333333332222233222 345566777888888888888888888888888
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
+...+|+.|+..++.+++++..++-+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998887754
No 163
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.55 E-value=22 Score=36.38 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=22.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe 404 (658)
+...+..|++.++.|++++..+..+...++.++..+.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666555554443
No 164
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.28 E-value=81 Score=33.42 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006170 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (658)
Q Consensus 407 dELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (658)
.+++|-.+.++. +......++..+.++..++.++
T Consensus 135 ~~~~R~~~L~~~-g~vS~~~~~~a~~~~~~a~~~l 168 (346)
T PRK10476 135 RTLERLEPLLAK-GYVSAQQVDQARTAQRDAEVSL 168 (346)
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHHHHHHHHHHH
Confidence 445555554433 3333333444444444444333
No 165
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.04 E-value=1.3e+02 Score=34.23 Aligned_cols=9 Identities=67% Similarity=0.715 Sum_probs=4.1
Q ss_pred cccccccch
Q 006170 602 AGATVKTSE 610 (658)
Q Consensus 602 ~~~~~~~~~ 610 (658)
.|++|+...
T Consensus 330 ~Ga~V~A~A 338 (420)
T COG4942 330 AGATVKAIA 338 (420)
T ss_pred CCCeeeeec
Confidence 344555433
No 166
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.43 E-value=2.3e+02 Score=36.60 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=79.4
Q ss_pred HHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 006170 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (658)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (658)
|.++.........++....-.+...++..-.++|.++...+-.. -+++...=++.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------------------------e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------------------------ELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 44557777777788888888888888888999999887663222 13444555677
Q ss_pred HhhhhhhhHHhhHHHhhhHHHHHhhhhhh----hHHHHHHHHHHHHHHHHHHhc---cchHHHHhhhhHHHHhhhhHHhh
Q 006170 223 SLARELDLEKKISELNQNEEQLKLKLHHT----EQVAFRMEEAAEVVWGRFLEA---ENSAEVLMGISKEMLGRFQIVQF 295 (658)
Q Consensus 223 SlA~EldLEKkL~es~~~eeeLk~kL~~~----eqe~~~lEE~~~~~~er~~EA---ENa~EvL~g~skel~gkLq~~qf 295 (658)
+|++--.||..+++.+.-.--+..++... -..+..++++..+...-..++ +=.++-.+...++....|+.+++
T Consensus 876 ~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888887776444444443333 334555665555544444442 22223334555666667766664
No 167
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.36 E-value=36 Score=32.98 Aligned_cols=45 Identities=33% Similarity=0.435 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
+....+..+++......+-.....+++..+......+.++...+.
T Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 106 ELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 168
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.82 E-value=1.7e+02 Score=34.98 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHH
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (658)
...+++.+.....+|+|.....+....+.. .+..-.+ +.++-.+-+...+......+..|... .+++..
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~-~~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~~~-------~~~i~~ 245 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLK-SAQEERR---VLADSLGNYADLRRNIKPLEGLESTI-------KKKIQA 245 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHH---HHHHHhhhhhhHHHhhhhhhhhhhHH-------HHHHHH
Confidence 345555666666666666655554422111 0111111 11111011223333444555555533 333444
Q ss_pred HHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCC--------
Q 006170 507 MRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSS-------- 578 (658)
Q Consensus 507 l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~~-------- 578 (658)
+.+.+..|...+..++......-++...-...+..++..|+.....|.+.. .+...++.|..++...+-+-
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP 324 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRP 324 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecC
Confidence 444444444444444444444433333333444444778888888888888 77777877766555442110
Q ss_pred ---------cceeccCC----------CCcccc----cccccCCcccccccccchhhhhhhhhhccCCc-ee
Q 006170 579 ---------SATMYNAG----------DTDDKE----LLINPTNNLAGATVKTSEDAVSLMKSVQAGPT-CI 626 (658)
Q Consensus 579 ---------~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 626 (658)
...+...+ +..++. |-|.+--.+..++.--|.|.=|+++|+-.|-+ ||
T Consensus 325 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCI 396 (670)
T KOG0239|consen 325 LLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCI 396 (670)
T ss_pred CCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeE
Confidence 01111111 222333 66777777778888888999999999877643 44
No 169
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.55 E-value=48 Score=35.44 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=46.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (658)
.|.+|+.++..++.+...+-. ..++.|. .+..++.++..|+.++.+...+-..+.. .......
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~---~~~~~~P----~v~~l~~~i~~l~~~i~~e~~~i~~~~~----------~~l~~~~ 277 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRS---ITPEQNP----QVPSLQARIKSLRKQIDEQRNQLSGGLG----------DSLNEQT 277 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hCCCCCC----chHHHHHHHHHHHHHHHHHHHHhhcCCC----------ccHHHHH
Confidence 344555554444433222211 2344444 3445566666666665554333222210 1234444
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 548 TQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 548 ~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
.+-++|+-+.-....-|..+...++...
T Consensus 278 ~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 278 ADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777554
No 170
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.09 E-value=1.3e+02 Score=33.34 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=54.8
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhh--------HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 504 QSFMRDKIKILESSLNRANIEKAAS--------AKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 504 L~~l~s~lksLE~sl~kA~q~ke~t--------lKeae~R-ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
+..+.+.+..++..+.++....... ..+++.| ..+..+-......+++.++.++.............++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444455555554444443331 2233334 444555666778888999999999999999999999999
Q ss_pred CCCCcceeccC
Q 006170 575 GKSSSATMYNA 585 (658)
Q Consensus 575 ~~~~~~~~~~~ 585 (658)
..-+|++-++.
T Consensus 318 ~I~AP~dG~V~ 328 (457)
T TIGR01000 318 VIKAPEDGVLH 328 (457)
T ss_pred EEECCCCeEEE
Confidence 99999887764
No 171
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=76.05 E-value=28 Score=31.21 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=33.1
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 006170 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (658)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~ 415 (658)
..++..|+.|..+-.+=..++..++..|..+..+|.|..+.|+.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777888888888888887764
No 172
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.00 E-value=1.4e+02 Score=33.11 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=23.0
Q ss_pred HHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 408 ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
+++.++..+..+-..+.-++-.+..|+...+.++.....
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 344445555554444455777777788777766655543
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.36 E-value=70 Score=30.37 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=60.6
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 006170 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (658)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak 537 (658)
+-+.|++++.=+--||..+.+.+..-+.+...++-|+..|-++ +.....+..|+..+.....+-+.++.=+|-+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~- 95 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKS- 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-
Confidence 5567778877777777787777777777777777666555433 33344445555555555555555555455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (658)
-+++-|+..|.-+|.=|+...+.+
T Consensus 96 ----------E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 96 ----------EEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666777776665543
No 174
>PRK11519 tyrosine kinase; Provisional
Probab=74.08 E-value=1.9e+02 Score=34.40 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.8
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 006170 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (658)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LSeTN 406 (658)
.....+.++-|++.+...+.++..|+.++...-..|
T Consensus 262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335567778888888888888888888887765544
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.90 E-value=25 Score=40.10 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANI 523 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q 523 (658)
.|..+++.++..-+..|..+.+.+.
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~ 389 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQT 389 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 176
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.51 E-value=17 Score=37.21 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCC
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~ 577 (658)
++.++..-+..+++.++....+.. ++-.+++-+++ +.+++.++.+++.+|-...-..+.|.+..+....+
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~--------~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~ 198 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLL--------ELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTIT 198 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--------HHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEE
Confidence 666677777777777766554433 33346665666 55788999999999999999999977777755433
No 177
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.93 E-value=2.3e+02 Score=34.48 Aligned_cols=194 Identities=22% Similarity=0.293 Sum_probs=102.8
Q ss_pred cchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchH--------HHH
Q 006170 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSA--------EVL 279 (658)
Q Consensus 208 qt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~--------EvL 279 (658)
+|.+-||--++=|. ...| .|=-||.+--+-.++|.-+-+++-+ .+. ...+.|.|..|.-+.- .+.
T Consensus 113 k~IEaqrKaIqELQ--f~NE-~lSlKLee~i~en~dL~k~nnaTR~-lCN---lLKeT~~rsaEK~~~yE~EREET~qly 185 (786)
T PF05483_consen 113 KIIEAQRKAIQELQ--FENE-KLSLKLEEEIQENKDLRKENNATRH-LCN---LLKETCQRSAEKMKKYEYEREETRQLY 185 (786)
T ss_pred HHHHHHHHHHHHHH--Hhhh-HHhHHHHHHHhhHHHHHHhhhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666555543 3333 0112344444445666666655554 222 2445555555544433 333
Q ss_pred hhhh---HHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006170 280 MGIS---KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (658)
Q Consensus 280 ~g~s---kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (658)
++.+ .-|+..+++..+.--++. -|+..||+...++...-+...++=-..++.+|.-|+-+...=|+.+++....
T Consensus 186 ~~l~~niekMi~aFEeLR~qAEn~r---~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~ 262 (786)
T PF05483_consen 186 MDLNENIEKMIAAFEELRVQAENDR---QEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLL 262 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3332 345556666555433332 2566788888888887665555444446777777777777777777666666
Q ss_pred HHHhHhhh---hh-----------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 357 LQNANACF---QT-----------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 357 L~~A~akl---Ee-----------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
|+...... ++ +..+.-++...+.+.|-.+-++++--..-+..+..++++-.++.+
T Consensus 263 l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~ 331 (786)
T PF05483_consen 263 LQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTE 331 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443322 21 122444556666666666666555444444444444444444443
No 178
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=72.23 E-value=1.2e+02 Score=30.89 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG---AESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r---AEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
.|++.|.+++.+.+-.+..... .+..|+.--.| |=.+...+++.+-. --..-+.++.+|+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~--------------ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpq---ll~~h~eEvr~Lr 74 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRK--------------ENKTLKQLQKRQEKALQKYEDTEAELPQ---LLQRHNEEVRVLR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHHHHHH
Confidence 4666666666655555444432 23333333333 33333344443332 2233444555555
Q ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccch
Q 006170 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (658)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N 497 (658)
.+-...-++...+++.+++.+.++.. .-+++.++..+++ .+ .-.+| +....+..
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k--------------~~~~l~~L~~L~~---dk--nL~eR-eeL~~kL~------ 128 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLK--------------TKDELKHLKKLSE---DK--NLAER-EELQRKLS------ 128 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---cC--CchhH-HHHHHHHH------
Confidence 54222234555666666665543332 3345555555555 22 11122 33334444
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006170 498 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (658)
Q Consensus 498 ~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL 557 (658)
.++..+..-..+++.|+-+++-++..=..-+.--..+..-+..-|..|..|+++|...|
T Consensus 129 -~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 129 -QLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544433322222222222334445555555555555555554
No 179
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.17 E-value=2.8e+02 Score=35.16 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=35.8
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHhccchHHHHhhhhHHHHhhhhH
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV---WGRFLEAENSAEVLMGISKEMLGRFQI 292 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~---~er~~EAENa~EvL~g~skel~gkLq~ 292 (658)
|||+|+.-.++--||=...|-...+|..-||-....+ .+-||---|-+---+|..+.+..+-.-
T Consensus 181 dle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer 247 (1195)
T KOG4643|consen 181 DLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAER 247 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhc
Confidence 4556666555544444455555566666666555443 344555555555666666666655443
No 180
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.90 E-value=1.5e+02 Score=31.89 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=20.3
Q ss_pred hhhhHhhHHHHHHHHHHHHHhhHhhhhhhh
Q 006170 150 LHDCEGSLKESQEHVSELKMQSAKFQRVLS 179 (658)
Q Consensus 150 L~~~~~sLkq~qe~~~eik~qsa~f~r~~~ 179 (658)
|.-++-+-+.+...|++-|.-...|+..+.
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666667777777777777777776663
No 181
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=71.81 E-value=35 Score=40.41 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCcccccccccchhh-----hhhhhhhccCCceehhHHHHHHHHH
Q 006170 597 PTNNLAGATVKTSEDA-----VSLMKSVQAGPTCISLMGFAVAMMM 637 (658)
Q Consensus 597 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (658)
|+.--...-++||+.- +|.-+-+-.||--+-|..|.|+||+
T Consensus 334 Pt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~Mf 379 (759)
T PF01496_consen 334 PTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMF 379 (759)
T ss_dssp ----------------------------------------------
T ss_pred CeeecCchhhhHHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHH
Confidence 4443444455666554 4555566666655556666677764
No 182
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.72 E-value=1.6e+02 Score=32.32 Aligned_cols=199 Identities=25% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-hHHHHHHHHHHHHH
Q 006170 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-EMDNFIESLKESLY 386 (658)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa-aLerrIelLKEel~ 386 (658)
+..|...+..|.+....| ..|+-...-+.+.|..+++..........++.|.-|+-|+ .|-++|+.|+-+-.
T Consensus 22 ~~~l~~~~~sL~qen~~L-------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVL-------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred hHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH
Q 006170 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (658)
Q Consensus 387 rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme 466 (658)
.---....=+.-++ ..|.+.+.-|+. +|+ .||++| ....+
T Consensus 95 ~L~~~~e~EEE~lt------n~L~rkl~qLr~------EK~-~lE~~L---------------------------e~EqE 134 (310)
T PF09755_consen 95 TLALKYEQEEEFLT------NDLSRKLNQLRQ------EKV-ELENQL---------------------------EQEQE 134 (310)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH------HHH-HHHHHH---------------------------HHhHH
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 006170 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (658)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL 546 (658)
.+|.-|..++.+.+.. +. .+..+|.-++.---.||+.|++..+
T Consensus 135 ~~V~kL~k~i~~Le~e-------~~-------~~q~~le~Lr~EKVdlEn~LE~EQE----------------------- 177 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKE-------KS-------AKQEELERLRREKVDLENTLEQEQE----------------------- 177 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HH-------HhHHHHHHHHHHHHhHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceeccC-----CCCccc
Q 006170 547 ATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA-----GDTDDK 591 (658)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~~-----~~~~~~ 591 (658)
.=|.||..|+.-+..+++.|-.+|+...-+||-..+.+ +||.++
T Consensus 178 -~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~ 226 (310)
T PF09755_consen 178 -ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAER 226 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhH
No 183
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.67 E-value=1.3e+02 Score=35.58 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTN 406 (658)
......+.++-|.+.+...+.++..|+.++...-..|
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446677788888888888888888888887766555
No 184
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=71.61 E-value=1.3e+02 Score=31.21 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les 418 (658)
+..+..++..++.....|..++.. +..+++|-.+.++.
T Consensus 103 ~~~~~~~i~~~~~~~~~a~~~l~~---a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 103 VQQLQAKVESLKIKLEQAREKLLQ---AELDLRRRVPLFKK 140 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHC
Confidence 334444444444444444444332 34455555543433
No 185
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=2.6e+02 Score=34.57 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=77.9
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHH
Q 006170 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (658)
|...|+..|...+..+..++...+.-..+-..-.+++..+-+-|.+++.++.+- +-.-.+|+..|+
T Consensus 452 k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l--------------~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 452 KLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL--------------APEKQELNHQLK 517 (1118)
T ss_pred HHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhHHHHHHHHHH
Confidence 555666666666655666666665554433345668888888888888887643 233336777777
Q ss_pred HHHhhHHHH---HHHHHHHhHHHHhh-----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 506 FMRDKIKIL---ESSLNRANIEKAAS-----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 506 ~l~s~lksL---E~sl~kA~q~ke~t-----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (658)
.+.+..+.- ...|+++...|+.. -||.+....-+.-.-.||..=++.+..|+....+.||+=-+++
T Consensus 518 q~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ 597 (1118)
T KOG1029|consen 518 QKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKL 597 (1118)
T ss_pred HhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766554321 23455555555554 3444444444555556666666666666666666666544444
Q ss_pred h
Q 006170 572 Q 572 (658)
Q Consensus 572 d 572 (658)
+
T Consensus 598 k 598 (1118)
T KOG1029|consen 598 K 598 (1118)
T ss_pred H
Confidence 4
No 186
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=71.21 E-value=2.4e+02 Score=34.12 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~t-----------------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
.|++.++.+.++...+...+-...+..+.+ +...+..-+-+.+.+..+..+++.+......+-
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888777777777777777666666 222233334455555666666666666667777
Q ss_pred HhhhHHHHHHhhcCCCCc
Q 006170 562 SENKLLVEKLQYSGKSSS 579 (658)
Q Consensus 562 eenK~L~ekLd~~~~~~~ 579 (658)
+++..|..++..+++..+
T Consensus 608 EE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 608 EELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 777777777777765544
No 187
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.07 E-value=1.8e+02 Score=34.60 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=77.2
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhH------HHHhhhhHHhhhccccccchhHHHHHHH
Q 006170 239 QNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK------EMLGRFQIVQFNLNGSLQRESELKSKLG 312 (658)
Q Consensus 239 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~sk------el~gkLq~~qf~L~as~~REsel~sKL~ 312 (658)
.+...+..|...+.+-..|+++-...+..++-.+|++.+-++-..+ +....++.+ .+++.+
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~q-- 319 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQ-- 319 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHH--
Confidence 4555666666666666677777777777777777777766664321 111111111 112222
Q ss_pred hHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhH
Q 006170 313 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (658)
Q Consensus 313 ~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa 392 (658)
+.++..+...+...-....+.+.+|+.+..+|+.++...+.++. .+...++....|+.++.-++.-.
T Consensus 320 --l~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~lY 386 (726)
T PRK09841 320 --LNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAVY 386 (726)
T ss_pred --HHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333332233578899998888888777766554443 23344555556666666666666
Q ss_pred HHHHHHHHHHh
Q 006170 393 ESAEEKVTQLT 403 (658)
Q Consensus 393 ~tAesKle~LS 403 (658)
.....|.+++.
T Consensus 387 ~~lL~r~~e~~ 397 (726)
T PRK09841 387 LQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 188
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.85 E-value=1.6e+02 Score=31.93 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHH
Q 006170 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (658)
Q Consensus 391 Ra~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE 470 (658)
+..++...+-+.-+..-|++.++. + .+..+|.+.+.+...-|.-+.-.+..+++|..-|..-.+-+.+.+
T Consensus 28 ~f~~~reEl~EFQegSrE~Eaele---s-------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELE---S-------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543 2 367777778877777777777777777777766666666666666
Q ss_pred HHhhhhhhhh
Q 006170 471 DLKSKVSKAE 480 (658)
Q Consensus 471 dLk~Kl~rAE 480 (658)
.++++.-
T Consensus 98 ---ddlsqt~ 104 (333)
T KOG1853|consen 98 ---DDLSQTH 104 (333)
T ss_pred ---HHHHHHH
Confidence 6666444
No 189
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.56 E-value=74 Score=34.37 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
-+.+.-|+++++..-.--++-..-.-+|.++||-|++.
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34455555555555444455555566677777777763
No 190
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=70.40 E-value=1e+02 Score=33.77 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcccceecccc
Q 006170 115 LLDTIHVEIVNVHHKISSCK 134 (658)
Q Consensus 115 ~~~~lq~~I~~~~~~~~s~~ 134 (658)
-++.++..+..|+.++.++.
T Consensus 33 ~I~~~~l~~~~A~~kF~~~~ 52 (388)
T PF04912_consen 33 DIERSRLNPDEARSKFKGAR 52 (388)
T ss_pred chhhcCCCHHHHHHHhCcCc
Confidence 36666667777777665554
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.29 E-value=1e+02 Score=29.34 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=37.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
.+.|..++..+.-+++++.+.+..-..+...+-.++..|+++....+ ++..|+.++++.+.+.+-+--+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----------~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----------EVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555556666665543332 4556666776666444444433
No 192
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.74 E-value=43 Score=33.21 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---HH
Q 006170 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---KL 538 (658)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Ra---k~ 538 (658)
+..+...+-.|+.++.-+-..-.....+++-++..+-+|..++.....++..|+........+-...-.++..+. ..
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333334444555555555555555555555555555444443333222222222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 006170 539 MMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (658)
Q Consensus 539 aE~lV~KL~~ErdrLedQL~s~keenK~L~e 569 (658)
+.|=..-|+.+..-+++++..+..+|+.|++
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333444444444455555555555444
No 193
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=69.13 E-value=59 Score=35.31 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdE 408 (658)
...+..+++++..|..+++.|..++..-....... -..+++..+.+..+-.++.+++.|+..+.+|......+-..
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888887776654422111111 23466788888888888999999999998888877766555
Q ss_pred HHHHh
Q 006170 409 LSEEI 413 (658)
Q Consensus 409 Lerel 413 (658)
+.+.+
T Consensus 167 ~~~~~ 171 (301)
T PF06120_consen 167 LTEQR 171 (301)
T ss_pred HHHHH
Confidence 44443
No 194
>PF15294 Leu_zip: Leucine zipper
Probab=68.93 E-value=78 Score=34.17 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc-------CC--CCcchhhhhHHHHHHHHHHH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG-------NN--DSNTKKVGILENQLRDLEIQ 440 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les-------rs--~~deEK~~~LE~QLKEa~~Q 440 (658)
..+-++..|..|.++-.+..+|+.+.+..|...-+-...++..++.|+. +. ......+.-||.++.-++.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 4456888999999999999999999999999999999999999988887 21 22345566688888877766
Q ss_pred HHHh
Q 006170 441 LQQA 444 (658)
Q Consensus 441 LqhA 444 (658)
++.+
T Consensus 206 ~ek~ 209 (278)
T PF15294_consen 206 LEKA 209 (278)
T ss_pred HHHH
Confidence 6665
No 195
>PRK11519 tyrosine kinase; Provisional
Probab=68.58 E-value=1.4e+02 Score=35.34 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS 403 (658)
..+.+.+|..+...|+.++...+.++.. +...++.+..|+.++.-++.-.....+|.+++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~-----------lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA-----------MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877777777766665544332 334556666777777777777777777777754
No 196
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=68.20 E-value=2.8e+02 Score=33.69 Aligned_cols=218 Identities=18% Similarity=0.252 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
-.++.+|..|+..||+.|...+.....- -.+++...+.-..|+..++++...+.+-.+-+.. |.+-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e-------~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~-------LR~Y 226 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGE-------AKELAEAQREADLLREQLSKTQEELEAQVTLVEQ-------LRKY 226 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHH
Confidence 4788899999999999997766643211 1355666666788888888877666553332222 2222
Q ss_pred hhhhhcCCCC----cchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhh-
Q 006170 413 INFLKGNNDS----NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE- 487 (658)
Q Consensus 413 lk~Lesrs~~----deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aE- 487 (658)
+..+-..... .-||...++ .=..|+.-+..--+.-+=..-....+.+|+++-| .++.+=-.-.+..|
T Consensus 227 vGeq~p~~~~~~~we~Er~~L~~-----tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQE---eEL~~Kvqp~d~Le~ 298 (739)
T PF07111_consen 227 VGEQVPPEVHSQAWEPEREELLE-----TVQHLQEDRDALQATAELLQVRVQSLTDILTLQE---EELCRKVQPSDPLEP 298 (739)
T ss_pred HhhhCCcccccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCCCCCCCCc
Confidence 2222211100 112222222 1111222222221221101113445667777766 44443332222222
Q ss_pred ---hhh---------------hhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHh-HHH-HHHHHHH-H
Q 006170 488 ---EQC---------------IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR-TKL-MMEMVMQ-L 546 (658)
Q Consensus 488 ---sKc---------------~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~R-ak~-aE~lV~K-L 546 (658)
.|| +-|-.--++++..++-+++++.+||..+....++..--.--+..| |++ ++++-+| |
T Consensus 299 e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktL 378 (739)
T PF07111_consen 299 EFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTL 378 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHH
Confidence 233 222344557788899999999999999999988887664333333 111 3444443 5
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 547 ~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
+.+..+-++.-..+..++..-...|+
T Consensus 379 Q~ELsrAqea~~~lqqq~~~aee~Lk 404 (739)
T PF07111_consen 379 QAELSRAQEARRRLQQQTASAEEQLK 404 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444444444433
No 197
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.85 E-value=1.1e+02 Score=32.04 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=49.0
Q ss_pred HHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCC
Q 006170 515 ESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (658)
Q Consensus 515 E~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~ 577 (658)
..-.+...+++++. +.+|..=...+|..+.++..++++..+.+..+.++|.-|-+..+...+.
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555 6666777888999999999999999999999999999998888876555
No 198
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.18 E-value=1.2e+02 Score=30.88 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
.++.++...-..+-+..+..+.++....+.....+++++.+++.|-.|++........-+.....+..+..-+..++.+
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444555555555555554544555777777777777777765444444444443333333333333333
No 199
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=67.14 E-value=2.1e+02 Score=31.83 Aligned_cols=21 Identities=10% Similarity=0.310 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHhhhhhhhhhh
Q 006170 462 IWDMETLIEDLKSKVSKAESK 482 (658)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~R 482 (658)
++++..-+..+++.+..++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~ 258 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQ 258 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.13 E-value=1.6e+02 Score=30.58 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 006170 427 VGILENQLRDLEIQLQQAK 445 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~ 445 (658)
+..||.++.+.+.+.+..+
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 122 LAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666655554444
No 201
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.91 E-value=76 Score=31.06 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKV 399 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (658)
++.....++..++.+++.+..||..++..++.... .+.+|...|+.|+.+...+....+.-....
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777888888888887777766544 667778888888888776665555444433
No 202
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.81 E-value=82 Score=30.32 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~L 416 (658)
++|.+-+.++=+||+...+.|..|+.. |..||+-|-.++++..+-......+...+......+...++.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367778888888888888888888765 4567777777777777777777777777777777777777776
Q ss_pred hcCCCCcchhhhhHHHHHHHH
Q 006170 417 KGNNDSNTKKVGILENQLRDL 437 (658)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa 437 (658)
... +..||..|.+.
T Consensus 109 ~~~-------V~~Le~ki~~i 122 (126)
T PF07889_consen 109 QQM-------VEGLEGKIDEI 122 (126)
T ss_pred HHH-------HHHHHHHHHHH
Confidence 663 66777766554
No 203
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=66.75 E-value=2.7e+02 Score=32.92 Aligned_cols=273 Identities=20% Similarity=0.228 Sum_probs=135.5
Q ss_pred hhhhhHHHHHHHHHHHHHH---HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHH
Q 006170 248 LHHTEQVAFRMEEAAEVVW---GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMV 324 (658)
Q Consensus 248 L~~~eqe~~~lEE~~~~~~---er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~ 324 (658)
|.-.+.+.-++.|..+++| +|=.+|-|-.+..+.++..-+.|. .+...+....
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~------------------------ke~n~~L~~E 331 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKA------------------------KENNEHLKEE 331 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH------------------------HHHHHHHHHH
Confidence 4445555555666555544 566788887777766655544443 3333333444
Q ss_pred HHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006170 325 LQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 325 lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (658)
.+.+..+ .++|.. .++..+++|++....+.......++...--+.+....+.+...+..-+..-.....-+..
T Consensus 332 ie~V~~sY~l~e~e~~----~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 332 IERVKESYRLAETELG----SVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred HHHHHHHhccChhHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444444 344433 445566666666666666655555543333444444444444333333333333322322
Q ss_pred HhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhh
Q 006170 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (658)
Q Consensus 402 LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~ 481 (658)
|.+-=.+-... ++.+-++|.+.+ .|=+-+++=.+=++. -.
T Consensus 408 LrkdEl~Are~--------------l~~~~~~l~eik-------------------R~mek~nLPGlPe~~-------l~ 447 (570)
T COG4477 408 LRKDELEAREN--------------LERLKSKLHEIK-------------------RYMEKSNLPGLPETF-------LS 447 (570)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHH-------------------HHHHHcCCCCCcHHH-------HH
Confidence 22211111111 122222233332 121122222222311 12
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 482 RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
+...+..++- .|..+|+-+.=|++..-.-.+.|.. ++.+-....+.+|.+ -+|-.||-.-.
T Consensus 448 l~~~~~~~i~-------~l~~eLse~pinm~~v~~~v~~a~~-------~m~~l~~~t~e~ve~-----a~LaE~lIQY~ 508 (570)
T COG4477 448 LFFTAGHEIQ-------DLMKELSEVPINMEAVSALVDIATE-------DMNTLEDETEEVVEN-----AVLAEQLIQYG 508 (570)
T ss_pred HHHhhhhHHH-------HHHHHHhhcCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 2234445566 7888888888888877555554432 222223334444433 24555666666
Q ss_pred HhhhHHHHHHhhcCCCCcceeccCCCCcccccccccCCcccccccccchhhhhhhhhhccCCc
Q 006170 562 SENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGPT 624 (658)
Q Consensus 562 eenK~L~ekLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (658)
-+|+.-+..++..=+++--..++++|-+ +.|+.+++.+-+|-.|-|
T Consensus 509 NRYRs~~~~v~~~l~eAe~lF~~~~dY~-----------------~s~eia~qaLE~vEpGv~ 554 (570)
T COG4477 509 NRYRSRNAEVAKSLNEAERLFENAFDYD-----------------ASFEIASQALEKVEPGVT 554 (570)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhcchh-----------------HHHHHHHHHHhhhCCcHH
Confidence 6677766666666556666677777766 345666677776666544
No 204
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.42 E-value=1.9e+02 Score=31.16 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (658)
.|+-.+.++++..|+.+++...++....+.+-..+.+-+.|..+|..++.+|.+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444444555555555555544443
No 205
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=66.15 E-value=3.9e+02 Score=34.59 Aligned_cols=34 Identities=3% Similarity=-0.062 Sum_probs=16.4
Q ss_pred hhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006170 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (658)
Q Consensus 489 Kc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~ 522 (658)
+|.+++..=..-+.+++.+.+++..+=...-...
T Consensus 532 ~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~ 565 (1294)
T KOG0962|consen 532 KLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFP 565 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccC
Confidence 3444444444445555555555555544443333
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.44 E-value=1.7e+02 Score=35.19 Aligned_cols=116 Identities=26% Similarity=0.357 Sum_probs=84.0
Q ss_pred ccchHHHHHHHH--HHH-HHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 006170 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (658)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (658)
.+.--|--.+|| -++ .-+|++ .+++...-.+..-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455665 222 334443 5677777666666667778899999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH
Q 006170 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (658)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~le 326 (658)
+.++.+++ ..+-....-|.+.+..|+....++.+-...++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 44566666788888888887777654443333
No 207
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.10 E-value=32 Score=29.34 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhh
Q 006170 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (658)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (658)
.+.++|..+......+..++.+++....+|...|..|+.+++...+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666677777777777777665544
No 208
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.64 E-value=65 Score=32.35 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
+......++.++..|..++......+. .++..|+..+..-...++|.. ...++..|.+...++..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~--------------~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIE--------------ELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666676776666666655554444 444445555555555566655 67788888888888888
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006170 412 EINFLKGNNDSNTKKVGILENQLRDLE 438 (658)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~ 438 (658)
++..+... |-+++..+...+..++
T Consensus 125 el~~~~~~---Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 125 ELEKYSEN---DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88855554 5577777776666554
No 209
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.96 E-value=98 Score=26.88 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-------------------------AKEVNHRTKLMMEMVMQLATQRELI 553 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~t-------------------------lKeae~Rak~aE~lV~KL~~ErdrL 553 (658)
+|..++..+..++..|+..+..+....++- .+.+..+.+.++.-+.+|......+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665554433332 5666666666666666666666666
Q ss_pred HHHHhHHHHhhh
Q 006170 554 QKQVYSLTSENK 565 (658)
Q Consensus 554 edQL~s~keenK 565 (658)
..++..++..++
T Consensus 89 ~~~l~~~~~~l~ 100 (106)
T PF01920_consen 89 EKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.51 E-value=1.3e+02 Score=34.75 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=12.6
Q ss_pred hHHhHHHHHHHHHhhhhcccc
Q 006170 108 ELREVERLLDTIHVEIVNVHH 128 (658)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~ 128 (658)
.+.+|=+|++.-...|.+.+-
T Consensus 87 t~~Dll~F~~~~~~~I~~iri 107 (493)
T KOG0804|consen 87 TSHDLLRFCASFIKQISDIRI 107 (493)
T ss_pred cHHHHHHHHHHHhhhhheeEE
Confidence 345555666666666666553
No 211
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.46 E-value=97 Score=28.23 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
..++..|.++++..+..|.+..+.|+.++.......+.+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999998888888888888888887776665443
No 212
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.31 E-value=38 Score=30.47 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=51.2
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (658)
.+++...+.+...-.+...++..++.+..|+-.-...-.++|++....+.|....+-+-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777778888888888999999999999999999999999999999999988876543
No 213
>smart00338 BRLZ basic region leucin zipper.
Probab=63.05 E-value=43 Score=27.60 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=41.0
Q ss_pred HHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 516 ~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
.+..+.-+++..|+.+++.+....+.-...|..+++.|..++..++..+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999999888888888888888888887765
No 214
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.83 E-value=3.8e+02 Score=33.30 Aligned_cols=146 Identities=20% Similarity=0.290 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH--------HHHHHHhhhhhHHHHHHH---HH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES--------LKESLYGAESRAESAEEK---VT 400 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel--------LKEel~rAEsRa~tAesK---le 400 (658)
++.++..++.+-..+|..|...+.+-++-...++.+.+.++.|++.|-. |.+.+..-.++++.|+.- ..
T Consensus 834 PE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~e~~~fI~ 913 (1480)
T COG3096 834 PEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQEAARFIQ 913 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999888877777666677766666666665532 233333333333333221 12
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhH----hhhHhHHHHHhhhHHHHHhHHHH----HHHH
Q 006170 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----VSSEASQEQQSMLYSAIWDMETL----IEDL 472 (658)
Q Consensus 401 ~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~----asaEas~eqQ~mkyseisdme~v----IEdL 472 (658)
.---|-.+|+--.++|.+ |-+.-+.|+.+...+..+..+++ +.++--+++----|+.-.+|++- -|.|
T Consensus 914 qhG~tls~LEpia~~Lqs----DPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekL 989 (1480)
T COG3096 914 QHGNTLSKLEPIASVLQS----DPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKL 989 (1480)
T ss_pred HhcchHHhhhhHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHH
Confidence 222345566667777776 55777888887777765555554 44444455555567777777743 4444
Q ss_pred hhhhhhhhh
Q 006170 473 KSKVSKAES 481 (658)
Q Consensus 473 k~Kl~rAE~ 481 (658)
+.++..++.
T Consensus 990 r~rL~q~ea 998 (1480)
T COG3096 990 RQRLEQAEA 998 (1480)
T ss_pred HHHHHHHHH
Confidence 555554443
No 215
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.76 E-value=1.1e+02 Score=27.47 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (658)
...++.|.++++.-+.++....+.++.++..++.+.+.
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999998888877654
No 216
>PF15456 Uds1: Up-regulated During Septation
Probab=61.71 E-value=1.2e+02 Score=29.02 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH------HhHhh------------------hhhhHHHHHhHHHHHHHHHHHHHh
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ------NANAC------------------FQTSQEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~------~A~ak------------------lEesE~EVaaLerrIelLKEel~r 387 (658)
+-+||.+|.+.++.|...++-....+. +|-.+ ....+++++..+++|+++-.++.+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666776666666666665554432 11111 222377999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhh
Q 006170 388 AESRAESAEEKVTQLTDT 405 (658)
Q Consensus 388 AEsRa~tAesKle~LSeT 405 (658)
+|.|+.....++=+=+-+
T Consensus 100 le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHTAA 117 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887554433
No 217
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=61.61 E-value=2.1e+02 Score=29.88 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=48.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCcchhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSNTKKV 427 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr----s~~deEK~ 427 (658)
=+.|..|.+.|..++..+..+..++..|-.....+...=..+.|+++.|=.| +..|-+|-
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRF 94 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERF 94 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH
Confidence 4578888888888888888888888888888888888888889999988888 44454444
No 218
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.42 E-value=3.7e+02 Score=32.64 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
.+.-.+|+++.-||.+-+....|..-.....++.-++|.+|+-.|+.-..++--+|+-++.-.
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel 166 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL 166 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 667789999999999999999998888888888888999999999999999988888777643
No 219
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.63 E-value=2e+02 Score=29.24 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (658)
+..++....-....|.+|...+.+|+.+|...+-+-..|.-..
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555666666555555555444333
No 220
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=60.54 E-value=84 Score=32.24 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=59.1
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006170 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 322 ~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (658)
+.-|..+.-.+-+++..+-+-|-.+|+.+|..++++.+--..+.+.++.-.++.+.+.-+|.+|-.-+.+++.-..=++-
T Consensus 60 ekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 60 GNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555556788999999999999999999999888666666555544555555555555555555555544444444
Q ss_pred HhhhhHHHHHH
Q 006170 402 LTDTNLELSEE 412 (658)
Q Consensus 402 LSeTNdELere 412 (658)
--+|-|||++-
T Consensus 140 ~~~~~~~~~~~ 150 (189)
T TIGR02132 140 QQKTQDELKET 150 (189)
T ss_pred CccchhHHHHH
Confidence 44555555543
No 221
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=59.91 E-value=2.8e+02 Score=30.83 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhhh-hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNAN-ACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~-aklEe-sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS 403 (658)
+.....++.++...|.....+..+..-.. ....- ...+.++++............++.|+..+.+....-.
T Consensus 201 ~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~ 273 (458)
T COG3206 201 DERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGR 273 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56777788888888888877776644433 22221 2667888888888888888888888887776655433
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.54 E-value=59 Score=31.39 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHHhHHHHHhhhhHHHHHhhcC--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHh
Q 006170 310 KLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNE 373 (658)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s--------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaa 373 (658)
-...++++|..++....|.=+. +++|+..+...+..|.+++...........+.+-...+ ....
T Consensus 34 ~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 34 AVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3445566666555444443332 35566666666666666666666655555444433222 2224
Q ss_pred HHHHHHHHHHHHHhhhhhHH
Q 006170 374 MDNFIESLKESLYGAESRAE 393 (658)
Q Consensus 374 LerrIelLKEel~rAEsRa~ 393 (658)
|...|..|+.++..-++|+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444443
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.36 E-value=2.6e+02 Score=30.24 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 543 V~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
...+..+.-+++++.-++...+......++..+
T Consensus 101 ~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 101 YNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666667777777777554
No 224
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.84 E-value=1.2e+02 Score=36.04 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes---E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS 403 (658)
..|++.|..++..+...+..+..+|..+....... .-++..++++|..|+-++.+..++.+.-..|+..+-
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777666665533 448888999999999888888887777666666554
No 225
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.64 E-value=1.8e+02 Score=28.27 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=63.7
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhhhhhHHHHH
Q 006170 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR--------------LQNANACFQTSQEQLN 372 (658)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ--------------L~~A~aklEesE~EVa 372 (658)
++..+.....||..++..=+-||-. ++-.|+-...++-+.+++=+.. |.+.+.++.....+..
T Consensus 18 lk~~l~k~~~ql~~ke~lge~L~~i---DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEELGEGLHLI---DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655544444432 3333333333333333332222 4445555555566777
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les 418 (658)
.+...|...++.+.+....+..+...+..+...|..+......+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7777777777777777777777777777777777777666665544
No 226
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.86 E-value=41 Score=28.61 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
+.++++|.-|.+++|.+|...+=+-+.+|..+....+.|.+++....
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999988888654
No 227
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=57.26 E-value=2.1e+02 Score=28.54 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
.|+.-+++.+.++..++..+...-+....+++.+..++..+.+=+.|+..|..
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433344445555555555555555555555533
No 228
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.92 E-value=3.9e+02 Score=31.46 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=17.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 467 TLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
.=|++|-.++..|++++-.....|-
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~ 444 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECR 444 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666777788888777777777
No 229
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=55.89 E-value=2.1e+02 Score=31.81 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----HHhHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 006170 342 KVKSLEEQLKESEIRLQNANACFQTSQEQ-----LNEMDNFIESL------KESLYGAESRAESAEEKVTQLTDTNLELS 410 (658)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~E-----VaaLerrIelL------KEel~rAEsRa~tAesKle~LSeTNdELe 410 (658)
++...+.+++....++..+++.++..++. ..+++|+-++. .++++.|..-...|...+.... ...+
T Consensus 99 ~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~~~~ 175 (352)
T COG1566 99 ALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---AAQK 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---HHHH
Confidence 34444444444444444444444333332 23666666666 5566666666666666555444 3333
Q ss_pred HHhhhhhcCCCCcchhhhhHHHHHHHHHHHHH
Q 006170 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (658)
Q Consensus 411 relk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (658)
..+..|.+.-......+..++.+++.++..|+
T Consensus 176 ~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 176 QNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred HHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
Confidence 44444544433333344444444444443333
No 230
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=55.36 E-value=2.4e+02 Score=29.72 Aligned_cols=38 Identities=5% Similarity=-0.164 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceeccC
Q 006170 548 TQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (658)
Q Consensus 548 ~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~~ 585 (658)
.+++.++.++...+...+.....++++...+|+.-++.
T Consensus 178 ~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~ 215 (331)
T PRK03598 178 QDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGTIL 215 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence 45667777788888888888888888888888877664
No 231
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.26 E-value=4.7e+02 Score=31.92 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILES 516 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~ 516 (658)
.|..||+.++.++..++.
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887776
No 232
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=54.98 E-value=3.7e+02 Score=32.96 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
+++.|+..|+.|+++.-+..-++ +++.+.|++||.++.+|-..-+. +
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~s-----------s~LK~k~E~Lk~Evaka~~~pd~----------------------~ 692 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRS-----------SDLKSKIELLKLEVAKASKTPDV----------------------T 692 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHhcCCCCCc----------------------c
Confidence 34789999998888765544332 47888999999988544322111 1
Q ss_pred cCCCCcchhhhhHHHHHHHH
Q 006170 418 GNNDSNTKKVGILENQLRDL 437 (658)
Q Consensus 418 srs~~deEK~~~LE~QLKEa 437 (658)
.-+|++.||.|+|..
T Consensus 693 -----~k~kieal~~qik~~ 707 (762)
T PLN03229 693 -----EKEKIEALEQQIKQK 707 (762)
T ss_pred -----hHHHHHHHHHHHHHH
Confidence 126899999999973
No 233
>PRK10869 recombination and repair protein; Provisional
Probab=54.67 E-value=4e+02 Score=30.95 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=48.7
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHh---HHHHHH
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE---MDNFIE 379 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaa---LerrIe 379 (658)
++.+.|.++.-+|+.-...|...-++ .+.++..+++++..+-.=-++|...+...-+..+..+.++.. .+..++
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~ 344 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLE 344 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 34555555555555443333332222 355666777777777666666665555555444444444433 333455
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 006170 380 SLKESLYGAESRAESAEEK 398 (658)
Q Consensus 380 lLKEel~rAEsRa~tAesK 398 (658)
.|+.++.++..++..+-.+
T Consensus 345 ~Le~e~~~l~~~l~~~A~~ 363 (553)
T PRK10869 345 TLALAVEKHHQQALETAQK 363 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666665555555444333
No 234
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=54.64 E-value=2.7e+02 Score=29.17 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=40.4
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 006170 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (658)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (658)
-...|..+.+- +++..|.+.+..+|..|+.+...+..|+.....+.+.-+
T Consensus 21 as~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 21 ASQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667774 889999999999999999999999999988887644333
No 235
>PRK00846 hypothetical protein; Provisional
Probab=54.30 E-value=75 Score=28.31 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=44.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
..+-++++|.-|-+++|..|...+=+.+.+|..++...+.|.++++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477889999999999999999999999999999999999999999765
No 236
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.78 E-value=3.2e+02 Score=29.58 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=39.2
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006170 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (658)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q 523 (658)
+|.+|-.-|..|-.+..--..|.|..-..++-+++.+..+.+++..+..++..|| +|.++-|
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe-~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE-KLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4555555555555555555666666666677777777777777777777777774 3444433
No 237
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.72 E-value=1.4e+02 Score=27.16 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (658)
...|+.+++|.+.=+..=....+++. -|--|-++. .++.+|+.... ..+..+. .|
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~-----vyk~VG~vlv~~~~~e~~~~l~~r~e-------~ie~~i~-------~l 86 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTP-----VYKSVGNLLVKTDKEEAIQELKEKKE-------TLELRVK-------TL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcch-----hHHHhchhhheecHHHHHHHHHHHHH-------HHHHHHH-------HH
Confidence 44555555555533333223333332 255444433 44454444444 4444455 56
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 006170 501 KNKQSFMRDKIKILESSLNRA 521 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~kA 521 (658)
++.+..++.+++.++.++.++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777666666554
No 238
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.64 E-value=4.5e+02 Score=31.18 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HH--------------HHHhHHHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QE--------------QLNEMDNFIESLKESLY 386 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~--------------EVaaLerrIelLKEel~ 386 (658)
-+-+..||.+..+||++++..-.+...-+-.+-.. ++ .-++..| .+.
T Consensus 89 lk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~---~~~---- 161 (596)
T KOG4360|consen 89 LKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR---ELL---- 161 (596)
T ss_pred HhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHH---HHH----
Confidence 45567899999999999887666544333222110 00 1122222 111
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchh----hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHH
Q 006170 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK----VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (658)
Q Consensus 387 rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK----~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei 462 (658)
+.-..|++.+.+-|..+.-+...|+--...-++| ++.++++|+..+.|..--..-..--..+-+-.|++.
T Consensus 162 ------EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 162 ------EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred ------HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223445555555555555555554433322222 456788888887543322100011112233357788
Q ss_pred HhHHHHHHHHhhhh
Q 006170 463 WDMETLIEDLKSKV 476 (658)
Q Consensus 463 sdme~vIEdLk~Kl 476 (658)
+.+++.|-|++.|.
T Consensus 236 skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHhhHHHH
Confidence 88888888777664
No 239
>PRK00295 hypothetical protein; Provisional
Probab=53.20 E-value=60 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
+-+++.|.-|-+++|..|...+=+.+.+|..+....+.|.+.++...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888999999999999999999999999888888888888888653
No 240
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.12 E-value=84 Score=35.94 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 006170 396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (658)
Q Consensus 396 esKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~K 475 (658)
+...+.+-+--..++|+++.|+-+.+ .---...||++.+-++ |++.. +.+-+.-|+.-|++||.|
T Consensus 106 eqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~ka~----------Ed~eK----lrelv~pmekeI~elk~k 170 (542)
T KOG0993|consen 106 EQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDKAK----------EDEEK----LRELVTPMEKEINELKKK 170 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHH----------hhHHH----HHHHHhhHHHHHHHHHHH
Confidence 34444555555667788777765532 0013567888877665 45555 667788999999999999
Q ss_pred hhhhhhh
Q 006170 476 VSKAESK 482 (658)
Q Consensus 476 l~rAE~R 482 (658)
+.+||.|
T Consensus 171 l~~aE~~ 177 (542)
T KOG0993|consen 171 LAKAEQR 177 (542)
T ss_pred HHhHHHH
Confidence 9999987
No 241
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=53.00 E-value=2.9e+02 Score=28.78 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=61.3
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH---HHHH------HHHhHHHHhhH
Q 006170 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---ESSL------NRANIEKAASA 529 (658)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL---E~sl------~kA~q~ke~tl 529 (658)
.+....+..=+|-..+.+.+.-..++..-.|+. .|+.|+.-++..+... .... +.|........
T Consensus 58 ~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~-------~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~ 130 (202)
T PF06818_consen 58 QDSLRTKQLELEVCENELQRKKNEAELLREKLG-------QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGE 130 (202)
T ss_pred HHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh-------hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhcccc
Confidence 333444444444455777777777777778888 6666666666665554 1111 11111111123
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 006170 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (658)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~e 569 (658)
..+..-..-++++-..|..+|.+.+.+..+.-.+-+.-.+
T Consensus 131 ~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455556678888888999999998888876666555433
No 242
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.68 E-value=1e+02 Score=25.38 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 517 SLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 517 sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
+..+.-+++..|+++++.+....+.-...|..+++.|..++..++.+|
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888889999998888888888888888888888888777665
No 243
>PRK00736 hypothetical protein; Provisional
Probab=51.27 E-value=77 Score=27.18 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=42.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
+-+++.|.-|-+++|..|...+=+-+.+|..++..-+.|.+++....
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999999999999999998643
No 244
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.79 E-value=5.1e+02 Score=30.99 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHH
Q 006170 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 439 (658)
Q Consensus 388 AEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~ 439 (658)
+-++...-..|.--..+-+.++-.+++-+++. ++.|+..||.+.+.-..
T Consensus 429 e~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiaeler~~kdqnk 477 (654)
T KOG4809|consen 429 EASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAELERHMKDQNK 477 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhhcCchhhhhhh
Confidence 33333333344444566677777788888875 56888999888775543
No 245
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=3.2e+02 Score=28.68 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=66.2
Q ss_pred hhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH---------HHHHHHHhHHHHhh----------------
Q 006170 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---------ESSLNRANIEKAAS---------------- 528 (658)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL---------E~sl~kA~q~ke~t---------------- 528 (658)
.-...-..|+++.|.||. .|.-||..|+..++.. -...-+....|-.|
T Consensus 19 dai~~v~~r~dSve~KIs-------kLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 19 DAIDSVNKRSDSVEKKIS-------KLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 444566788889999999 8888888887766532 11111111112222
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 529 -------AKEVNHRTKLMMEMVMQLATQ--------RELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 529 -------lKeae~Rak~aE~lV~KL~~E--------rdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
+|+.-.--..+.+.+.++..+ +++|+|++.-+.+....|.+-|-.+-
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888888888888888888764 78999999999998888887776443
No 246
>PTZ00464 SNF-7-like protein; Provisional
Probab=50.47 E-value=1.2e+02 Score=31.21 Aligned_cols=73 Identities=7% Similarity=0.150 Sum_probs=51.5
Q ss_pred hhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006170 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (658)
Q Consensus 477 ~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQ 556 (658)
.+-+.|.+..+.|+- .++.|+..++..++..-. .+....-..|+-+-.|.+..|....++......|+.+
T Consensus 21 ~~l~~r~~~l~kKi~-------~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 21 KRIGGRSEVVDARIN-------KIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777776 788888888877764322 3333334457778888899999888888888888877
Q ss_pred HhH
Q 006170 557 VYS 559 (658)
Q Consensus 557 L~s 559 (658)
+++
T Consensus 91 ~~~ 93 (211)
T PTZ00464 91 QFT 93 (211)
T ss_pred HHH
Confidence 655
No 247
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=50.08 E-value=41 Score=36.29 Aligned_cols=76 Identities=13% Similarity=0.326 Sum_probs=63.2
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 006170 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (658)
Q Consensus 96 ~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~ 175 (658)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ + ..+.+.-.++.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~----------~~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-G----------DEYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-c----------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999999999876432 1 1234444779999999999999999999
Q ss_pred hhhhhcc
Q 006170 176 RVLSYFI 182 (658)
Q Consensus 176 r~~~~~~ 182 (658)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998765
No 248
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=50.08 E-value=3.1e+02 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=19.2
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhh----HHHHHHHHHHHhHHHHhh
Q 006170 485 SVEEQCIVLSEDNFELKNKQSFMRDK----IKILESSLNRANIEKAAS 528 (658)
Q Consensus 485 ~aEsKc~~Lse~N~ELeEEL~~l~s~----lksLE~sl~kA~q~ke~t 528 (658)
.|+.|+- .-|+|+..++++ +..|.+++.++.-+-.+.
T Consensus 140 hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SL 180 (207)
T PF05010_consen 140 HAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQSL 180 (207)
T ss_pred HHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 445555555544 445666665554444443
No 249
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=49.75 E-value=1.7e+02 Score=31.56 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNd 407 (658)
.+.+.+..||++..+...++.......+.. -.+.+.+......+.++....+.+...+..++..|.+||.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444444444444444433333222 3356677777777777777777788888888888877774
No 250
>PRK09343 prefoldin subunit beta; Provisional
Probab=49.50 E-value=2.3e+02 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (658)
..+++..|.++++.-+..|.+..++|+.++.......+.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999998888888888888888777776666553
No 251
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=48.92 E-value=1.1e+02 Score=26.61 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
|..+..|++.-..|-.+--.....+....++..+.+..+..+.+++..+..++...+.|+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444454444444333333333344444444445556666666666666666666666543
No 252
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=48.82 E-value=1.5e+02 Score=24.27 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh----hHHHHHH
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSEE 412 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT----NdELere 412 (658)
......+..+..++......|..... ......+..+-+..+.++.++..-+.++......+..+..+ +..+...
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566677777777777776633222 22345566666677777777777777777777777777544 3444444
Q ss_pred hhhhhc
Q 006170 413 INFLKG 418 (658)
Q Consensus 413 lk~Les 418 (658)
+..|..
T Consensus 82 ~~~l~~ 87 (105)
T PF00435_consen 82 LEELNQ 87 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 253
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=48.82 E-value=6.4e+02 Score=31.59 Aligned_cols=19 Identities=42% Similarity=0.358 Sum_probs=8.8
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 006170 426 KVGILENQLRDLEIQLQQA 444 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA 444 (658)
.++.|..++..++..+..+
T Consensus 778 ~~~~l~~~i~~~~~~~~~~ 796 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQA 796 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333
No 254
>PRK04325 hypothetical protein; Provisional
Probab=48.41 E-value=76 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.++++...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999999999888653
No 255
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.30 E-value=90 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=22.1
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
.....++|.+|..-++..|++..||-.|+.+--
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333345556666667777888888888887643
No 256
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=48.04 E-value=2.5e+02 Score=27.13 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH---------HHHhhhHHHHHHhhc
Q 006170 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS---------LTSENKLLVEKLQYS 574 (658)
Q Consensus 506 ~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s---------~keenK~L~ekLd~~ 574 (658)
.+.+.+++||+..++..+.++..-+.-..+++.++.-+.++..-...++..+.- .+++|+.|..+++..
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 577889999999999999999888888888888888888876665555555433 346677777666643
No 257
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.97 E-value=99 Score=29.65 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHH------hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHH
Q 006170 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW------DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (658)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseis------dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELe 501 (658)
..+|.||+|.+.-|..---+.+++.- |-.|- ++..++.+|..+.+.-|-|....+.+-- .+.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~v-----Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~-------~l~ 97 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPV-----YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE-------KLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHH-----HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 45566666666555555556666533 44443 4456777777777777777666666666 455
Q ss_pred HHHHHHHhhH
Q 006170 502 NKQSFMRDKI 511 (658)
Q Consensus 502 EEL~~l~s~l 511 (658)
+++.-+.+.+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 258
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.89 E-value=5.4e+02 Score=30.52 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 006170 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (658)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (658)
+.....|.+|-.+.+..+-++.-..++..|.+-++|.++
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~ 195 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLE 195 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999999888888764
No 259
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=47.89 E-value=33 Score=37.66 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHH
Q 006170 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (658)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKv 343 (658)
.+++|+..=|.+..-|.+....+..++..++.+|+....-=++++.-|.... ..+..++..+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 3455555555555555555555555555555555443333333333332221 3333444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 344 ksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
..++..+......+......+...+..+++|...|-.||.+|.
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334445555555555555543
No 260
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=47.35 E-value=6.5e+02 Score=31.25 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=80.8
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh--------h--HHHHHhhcCChhHHHHHHHHHHH
Q 006170 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--------D--MVLQKLESTKNSEVLTMKEKVKS 345 (658)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--------~--~~lekl~~s~esEv~sLqkKvks 345 (658)
+-.|+|++|.|+..-.-.++. .|..-++.|+-.|-+- + .+++-| -+|...|+.+++.
T Consensus 339 ~KYLLgELkaLVaeq~DsE~q---------RLitEvE~cislLPav~g~tniq~EIALA~Qpl----rsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDSEVQ---------RLITEVEACISLLPAVSGSTNIQVEIALAMQPL----RSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccchHHHH---------HHHHHHHHHHHhhhhhhccccchhhhHhhhhhh----hhhhHHHHHHHHH
Confidence 345677777766543333221 2455566666555431 1 122222 4778888889888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
|..+|++-+ +-..+... ..+-=|+.+|+..+-.|.-.+..+..-.+.-..|.++|.+.++-...|-+-|.
T Consensus 406 lnqqlreqe-~~~k~~~~-~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~ 475 (861)
T PF15254_consen 406 LNQQLREQE-KAEKTSGS-QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLR 475 (861)
T ss_pred HHHHHHHHH-hhcccCCC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888722 22211111 11344888999999999999999888888899999999999866666655443
No 261
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=47.32 E-value=28 Score=29.44 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006170 373 EMDNFIESLKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~ 401 (658)
++|-|+..||..+..||.|++.|+.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777666544
No 262
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=46.88 E-value=27 Score=38.25 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=31.6
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006170 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (658)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~ 421 (658)
.+|+++|..+++.++..|.|+.........+.+-...+...+..|++++-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35777777777777777777777776666666666666666666666543
No 263
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=46.41 E-value=5.5e+02 Score=30.11 Aligned_cols=238 Identities=15% Similarity=0.104 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhccchHHHHhhhhHHHH-hhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHH
Q 006170 261 AAEVVWGRFLEAENSAEVLMGISKEML-GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTM 339 (658)
Q Consensus 261 ~~~~~~er~~EAENa~EvL~g~skel~-gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sL 339 (658)
-..+..++|++.+-..-|=+-.-+.|+ ||....+-- .-+-.+..||+-+.+.+.-. .++--.++..-
T Consensus 169 q~~d~~e~~~~kdSQlkvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~-------~e~~i~~~~~f 236 (554)
T KOG4677|consen 169 QYRDYSEDWSPKDSQLKVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMH-------DENVITAVLIF 236 (554)
T ss_pred hHhhHhhhcccchhhHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHH
Confidence 445788999999986655555555443 344443322 13445555665555444311 11113456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHH-----HHHHhh---hhhHHHHHHHHHHHhhhhHHHHH
Q 006170 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK-----ESLYGA---ESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLK-----Eel~rA---EsRa~tAesKle~LSeTNdELer 411 (658)
-+|+-.+|.+++.--++++-|.-.+-....++..+....++.+ +++-.+ |.+.-+.-.|...+..--.|+-=
T Consensus 237 ~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rv 316 (554)
T KOG4677|consen 237 LKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRV 316 (554)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHh
Confidence 7889999999998888888888887766666666666655533 222211 11112222221111111111111
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHH--Hhhhhhhhhhhhhhhhhh
Q 006170 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIED--LKSKVSKAESKTESVEEQ 489 (658)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEd--Lk~Kl~rAE~RaE~aEsK 489 (658)
++.+-+.-...--.-+-+|..|+.+.+.|--|-. ++...|---+.+..+-..+++-. ++-.|.+.|..++.-+.+
T Consensus 317 e~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~---s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~ 393 (554)
T KOG4677|consen 317 ELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLE---SAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSS 393 (554)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhh
Confidence 1111111000001234566666666654444432 22222222244544444444433 345566777777776665
Q ss_pred hhhcccch--hhHHHHHHHHHhhHHH
Q 006170 490 CIVLSEDN--FELKNKQSFMRDKIKI 513 (658)
Q Consensus 490 c~~Lse~N--~ELeEEL~~l~s~lks 513 (658)
-..++-.- ++=..||.-++++++.
T Consensus 394 r~~~~~qski~dk~~el~kl~~~l~~ 419 (554)
T KOG4677|consen 394 RVNLKKQSKIPDKQYELTKLAARLKL 419 (554)
T ss_pred hccchhhccCcchHHHHHHHHHHHHH
Confidence 55333221 2556778888777763
No 264
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=46.12 E-value=3.4e+02 Score=27.70 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=86.8
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch-hHHHHHHHhHHHHHhh
Q 006170 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (658)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~ 320 (658)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++..-.- +.+..=....+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 344445555555555566677778888888899999999999999999999999999842222 22221111111
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006170 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (658)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (658)
..|...|.-++.-++..+....-...-++...+....++..++..++.|.+-+. .-|...|+...+
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln--~~R~~eae~~~~ 221 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN--QKRRQEAEQAVE 221 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 244445555666666555554444444444444445555556666666655553 234555555555
Q ss_pred HHhhhhH
Q 006170 401 QLTDTNL 407 (658)
Q Consensus 401 ~LSeTNd 407 (658)
.+.....
T Consensus 222 ~a~~~~~ 228 (240)
T PF12795_consen 222 EAEQLQE 228 (240)
T ss_pred HHHHHHH
Confidence 5444433
No 265
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=46.08 E-value=5.4e+02 Score=29.99 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=77.6
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh------H
Q 006170 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS------A 529 (658)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaE~aEsKc~-----~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t------l 529 (658)
.=.++-.-|+|.|--.+||=-| +++++.+ =||--..|=+.|-++++..=++|..+|--.-+.--.. +
T Consensus 359 ~Hr~i~egI~dVKkaAakAg~k--G~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl 436 (488)
T PF06548_consen 359 RHRRIMEGIEDVKKAAAKAGVK--GAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRL 436 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444555677777776666444 5666655 1222233445555555557788988886554444333 8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
++++.-+.++++--+..+.|-+++..||-.+|.+++.=..++++
T Consensus 437 ~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 437 REAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999886666654
No 266
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.92 E-value=4.2e+02 Score=28.62 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=82.8
Q ss_pred HHhhhhh-hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccc
Q 006170 222 KSLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300 (658)
Q Consensus 222 kSlA~El-dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as 300 (658)
++||+++ +...+|.|.=..|-+++......-+ |-++-.-.-..++...+.+...++.++-.|+..
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577776 5677888877766666655433222 555555555678888899999999999999999
Q ss_pred ccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006170 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (658)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (658)
...|..|-.|++.-.-.|+.-..-|+.|.+-++ .-.+-...+|.+|.+.-..
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888877777777777754 3334444455555544333
No 267
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.51 E-value=1.1e+02 Score=26.64 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=40.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888899999999999998889899888888899988888654
No 268
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=44.87 E-value=3.4e+02 Score=30.95 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=33.6
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHH
Q 006170 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 516 (658)
Q Consensus 449 Eas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~ 516 (658)
+.++. +...|.|+..+||+|+.+|..---| -...+.- -+..+|..++..|+.++.
T Consensus 213 ~~sd~----Ll~kVdDLQD~VE~LRkDV~~RgvR--p~~~qle-------~v~kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 213 EESDR----LLTKVDDLQDLVEDLRKDVVQRGVR--PSPKQLE-------TVAKDISRASKELKKMKE 267 (424)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHcCCc--CCHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 46677 8889999999999999998866544 2333333 344455555555554433
No 269
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=44.67 E-value=64 Score=28.50 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceeccCCCCcccccccccCCcccccccccchhhhhh
Q 006170 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSL 615 (658)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (658)
+.-..++...++.++++=+.-+..+..-...|...-+.-. -.++..+++..-+..
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~-------------------------~~~~~l~~s~~ll~~ 61 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYD-------------------------GQSSLLKKSRKLLKK 61 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHH
Confidence 3445666777777777777666666655555433322211 012334445566677
Q ss_pred hhhhccCCceehhHHHHHHHHHHHHHH
Q 006170 616 MKSVQAGPTCISLMGFAVAMMMILLIL 642 (658)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (658)
+..-..+|++|-+++|+|-+..++.|+
T Consensus 62 l~r~~~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 62 LERRDKTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 777778899998888877766665554
No 270
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=44.19 E-value=26 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 006170 627 SLMGFAVAMMMILLILIMSYTIT 649 (658)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~ 649 (658)
.++.|+++|...+ |.+.+||.+
T Consensus 15 ~Wi~F~l~mi~vF-i~li~ytl~ 36 (38)
T PF09125_consen 15 GWIAFALAMILVF-IALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHh
Confidence 4678888776554 445678864
No 271
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.12 E-value=69 Score=34.54 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=18.7
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHhhHhhhh
Q 006170 148 KKLHDCEGSLKESQEHVSELKMQSAKFQR 176 (658)
Q Consensus 148 ~kL~~~~~sLkq~qe~~~eik~qsa~f~r 176 (658)
.||.++...+..|+.++...+-+...-++
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~ 36 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQK 36 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777766666666555443
No 272
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.92 E-value=1.1e+02 Score=26.82 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
+..++.|..-+-++++-|+.|++.|..+-.++.++|..|.++...
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 273
>PF15294 Leu_zip: Leucine zipper
Probab=43.81 E-value=4.6e+02 Score=28.53 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHh----------------hHHHHHHHHHHHhHHHHhh
Q 006170 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRANIEKAAS 528 (658)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s----------------~lksLE~sl~kA~q~ke~t 528 (658)
+-.-|..|+.+..+..+|.-++|..|+..-+.+.+|+..|+.++. .+..||.+...+...=..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999999999988877 1344666666665444555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~ 558 (658)
+.+-+...+..+..|.-=-+++-+.+.++.
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 666666666666666666666666666643
No 274
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.78 E-value=2.8e+02 Score=26.00 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhH
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme------~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~EL 500 (658)
...|+.+++|++.=+..=....+++.- |--|-+++ .++.+|..+++..+ .++. .|
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~~d~~V-----Yk~VG~vlv~qd~~e~~~~l~~r~E~ie-------~~ik-------~l 90 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLPDDTPI-----YKIVGNLLVKVDKTKVEKELKERKELLE-------LRSR-------TL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhhHHHhhccHHHHHHHHHHHHHHHH-------HHHH-------HH
Confidence 445566666665333333344444443 66665555 44454444444444 4455 45
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 006170 501 KNKQSFMRDKIKILESSLNRAN 522 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~kA~ 522 (658)
+.....++.+++.++.++.++-
T Consensus 91 ekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 91 EKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655543
No 275
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=6.4e+02 Score=29.96 Aligned_cols=186 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006170 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (658)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (658)
+.+....+-++++++--+..+-.+++|...+...+-+-...||++... +.-+....|..|.-.|++.+..
T Consensus 234 q~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~----------e~~e~rk~v~k~~~l~q~~~~~ 303 (613)
T KOG0992|consen 234 QALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE----------ETTEKRKAVKKRDDLIQSRKQV 303 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHh
Q 006170 385 LYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD 464 (658)
Q Consensus 385 l~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisd 464 (658)
...-+ ++..-..+...-+++-.++-.++.+-.-....++ ..+.++--.+.+++.-..-..+-.--+..+|+..++
T Consensus 304 ~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN----~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se 378 (613)
T KOG0992|consen 304 SFELE-KAKDEIKQNDDKVKLIEELQDELSVALKECREEN----KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSE 378 (613)
T ss_pred HHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhH
Q 006170 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKI 511 (658)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~l 511 (658)
+....+ .|++.-.......-.|.. ++=.+|.-||.-++-++
T Consensus 379 ~~e~te---qkleelk~~f~a~q~K~a---~tikeL~~El~~yrr~i 419 (613)
T KOG0992|consen 379 YSELTE---QKLEELKVQFTAKQEKHA---ETIKELEIELEEYRRAI 419 (613)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
No 276
>PF13514 AAA_27: AAA domain
Probab=43.11 E-value=7.7e+02 Score=30.92 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=43.0
Q ss_pred hhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 006170 104 ILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (658)
Q Consensus 104 ildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~ 180 (658)
.+..=|++-|.+.|.+..+-..+... ..+...+......+.+.+....+...+.+.|......
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 589 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARL--------------AQLRARLEEARARLARAQARLAAAEAALAALEAAWAA 589 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888777666552 1235566666777777777777777777777776654
No 277
>PRK02119 hypothetical protein; Provisional
Probab=43.08 E-value=1e+02 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=40.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888899999999999999999999999999999988887643
No 278
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=42.97 E-value=4.1e+02 Score=27.73 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
.++=+...-.+.++||+++...+.++..+....+.....+..|+++|..++....-..-|...
T Consensus 83 ~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 83 NEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677788888888888888888888887777778888888888877765544444333
No 279
>PRK04406 hypothetical protein; Provisional
Probab=41.89 E-value=1.7e+02 Score=25.73 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=40.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
.+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999988999888887643
No 280
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=41.84 E-value=4.4e+02 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
.+.+.+|++.|...+.+-.+.+..+......+.-|-...+++-++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998888888888777777777777666
No 281
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.78 E-value=2.3e+02 Score=28.14 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=48.2
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHH
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESL 381 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelL 381 (658)
.|+-|.-..+|.|+.--+.-+ ..+-|+..|+.....|+.+...=...-..+...+.. .+++..+|...|+.|
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~----~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQ----EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666665543211111 023455566666666666554433333333333322 244555666666666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 382 KESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 382 KEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
++....-+.++.+......-+.+.-.++.++
T Consensus 102 e~e~r~L~~~~~~~~~q~~rlee~e~~l~~e 132 (158)
T PF09744_consen 102 EEENRQLELKLKNLSDQSSRLEEREAELKKE 132 (158)
T ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHHHH
Confidence 6655555555544444433333333333333
No 282
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.66 E-value=2.2e+02 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A 360 (658)
+.++.+|+.++.++..++..++.-+...
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766666665544433
No 283
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=41.46 E-value=4.8e+02 Score=29.02 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=27.0
Q ss_pred HHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
|...+..|++.+.+++..+..+...+...+ .....+.++ .+..+..++.|-..
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~-------A~i~~a~a~--~l~~a~~~~~R~~~ 141 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQ-------ALIAQAEAQ--DLDQAQNELERRAE 141 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH
Confidence 444555555555544444444444444444 444444443 55566666666544
No 284
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.44 E-value=1.1e+02 Score=27.92 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=38.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
+.++.-.+++++-+..|...++.|+..+..+.+....+...++.
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777788999999999999999999999999999988887763
No 285
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=41.24 E-value=3.9e+02 Score=26.91 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (658)
.++..+.+++..-|..|+.-..+|..-...++..+.++......+...+.+
T Consensus 78 ~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e 128 (201)
T PF12072_consen 78 KELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEE 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333333333333333333333
No 286
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=40.89 E-value=5e+02 Score=28.13 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
++-+..|.+|...+..+.+...-++....-. ...+.....-+..++.++..--..-++-|-+|...|..+..+
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk-------~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE 93 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKK-------QEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEE 93 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888888877777766655444333 334445555566666666666666677777777777777766
Q ss_pred hh
Q 006170 413 IN 414 (658)
Q Consensus 413 lk 414 (658)
.+
T Consensus 94 ~~ 95 (309)
T PF09728_consen 94 SK 95 (309)
T ss_pred HH
Confidence 55
No 287
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.40 E-value=2.6e+02 Score=32.81 Aligned_cols=92 Identities=26% Similarity=0.299 Sum_probs=54.0
Q ss_pred ccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------
Q 006170 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------ 367 (658)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------ 367 (658)
...-..||.-|++--.+-+.+|-.+ ++..++. =..|...|++++...|.+.+....+|..++.+.-..
T Consensus 404 ~~E~esRE~LIk~~Y~~RI~eLt~q---lQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 404 SPEEESREQLIKSYYMSRIEELTSQ---LQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677877777666666666543 2222221 146788888888877777777666666665543221
Q ss_pred -----HHHHHhHHHHHHHHHHHHHhhhhh
Q 006170 368 -----QEQLNEMDNFIESLKESLYGAESR 391 (658)
Q Consensus 368 -----E~EVaaLerrIelLKEel~rAEsR 391 (658)
+.+++.|.--+-.|-+++.+-...
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666655555555555544443
No 288
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.10 E-value=7.5e+02 Score=29.89 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q 006170 341 EKVKSLEEQLKESEIRLQNANACF 364 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~akl 364 (658)
++...++.++.....+|....++.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~ 198 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSI 198 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 289
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=39.84 E-value=6.5e+02 Score=29.09 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=99.4
Q ss_pred HHHHhh--hhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHH
Q 006170 276 AEVLMG--ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQL 350 (658)
Q Consensus 276 ~EvL~g--~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qL 350 (658)
.-||.| ||--+++=|=++--+|..-...=++|+-.|...-++|..-.-+....+.. -.+|+..-...-+.++.++
T Consensus 46 vtvltG~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 46 VTVLTGMLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhhhcchhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 45556666655555555444444566666666666665544444333332 2467777767777788888
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006170 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (658)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs 420 (658)
+...-.+.+|.-.+-....+-.++..++..|-+.--+++..+++-...-+.|-.++.+++.+.-.|.-++
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777666555566777888889888888888888888888888888888888888877777764
No 290
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.77 E-value=4.4e+02 Score=28.57 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs 420 (658)
++...+-.+.+++..+...-.|+..++.+-..++++-.-+.....-+.+.+
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333333334444444444445555555566666666555555555555544
No 291
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.15 E-value=70 Score=28.17 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 006170 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (658)
Q Consensus 95 a~efDlL~gild---sEv~ele~~~~~lq~~I~~~~~~~~s~~~ 135 (658)
+.-||+++.|-+ .+.+.++.-++.|..-|.+|+.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455788877765 36788888888888888888876655444
No 292
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=39.15 E-value=1e+03 Score=31.10 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=83.8
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH---HHh
Q 006170 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV---NHR 535 (658)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKea---e~R 535 (658)
.....+...+++-++..+.++|..+..+..+.- +..+++..+..++..+....+++..++.....++ ..+
T Consensus 919 ~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~-------~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 991 (1395)
T KOG3595|consen 919 IDKYSKVLKVVEPKRQELARLEAELKAAMKELE-------EKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELK 991 (1395)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788788888888888777777777 7778888888888888888888877777774444 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 006170 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (658)
Q Consensus 536 ak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ek 570 (658)
...+.++|..|..|++|.-..+......+..+...
T Consensus 992 ~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd 1026 (1395)
T KOG3595|consen 992 LLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGD 1026 (1395)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHH
Confidence 88999999999999999999999998888877543
No 293
>PRK12704 phosphodiesterase; Provisional
Probab=38.79 E-value=3.4e+02 Score=31.44 Aligned_cols=6 Identities=33% Similarity=-0.036 Sum_probs=2.3
Q ss_pred cccchh
Q 006170 493 LSEDNF 498 (658)
Q Consensus 493 Lse~N~ 498 (658)
||--|.
T Consensus 255 ls~~~~ 260 (520)
T PRK12704 255 LSGFDP 260 (520)
T ss_pred EecCCh
Confidence 343333
No 294
>PRK11020 hypothetical protein; Provisional
Probab=38.77 E-value=1.5e+02 Score=28.55 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-hHHHHHHhhcCCCC
Q 006170 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN-KLLVEKLQYSGKSS 578 (658)
Q Consensus 500 LeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen-K~L~ekLd~~~~~~ 578 (658)
+..||..+-++|..+.-++..|..+-+. ..+.|+..|++.|..+|.+++... ..|+.+-+... +.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-------------~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~-~l 68 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-------------EKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM-KL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 5678888888888777777666665543 467788888888888888877543 34444444333 44
Q ss_pred cc
Q 006170 579 SA 580 (658)
Q Consensus 579 ~~ 580 (658)
||
T Consensus 69 pF 70 (118)
T PRK11020 69 PF 70 (118)
T ss_pred Cc
Confidence 44
No 295
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.65 E-value=2.3e+02 Score=24.67 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQ 358 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~ 358 (658)
-+..|+.+++.+|.+++.+..++.
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454455544444443333
No 296
>PRK15396 murein lipoprotein; Provisional
Probab=38.00 E-value=1.2e+02 Score=27.14 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 354 EIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 354 ~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
..+.+..+++.+...+.+.++..-++.-+++..||-.|+++--
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444556666777777778888888888887644
No 297
>PF13514 AAA_27: AAA domain
Probab=37.90 E-value=9.2e+02 Score=30.29 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=93.3
Q ss_pred HHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhccc-CCCcccccc-------------cccCCcccccccccccc
Q 006170 144 EKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIH-GNNDEALEF-------------SANGQLSNINGKSKMKN 209 (658)
Q Consensus 144 ~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~-~~~~~~~~~-------------~e~~~~~~~~~~~~mqt 209 (658)
..+.....+....+.+.++.+.....+.+.-+.-+..+.. +..-....+ ...+.-..-.....|+.
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~~~ 534 (1111)
T PF13514_consen 455 EAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAVRE 534 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHH
Confidence 3456666666777777776666666666666555544431 111000000 00111111223456777
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHH------hhhh
Q 006170 210 ADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL------MGIS 283 (658)
Q Consensus 210 ~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL------~g~s 283 (658)
+++.-..++--=+.+|+--.|...+...+..-..+...+...+.....+..+-...|...-.+- .-+-+ +...
T Consensus 535 aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~-~p~~~~~Wl~~~~~~ 613 (1111)
T PF13514_consen 535 ADELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPL-SPAEMRDWLARREAA 613 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHH
Confidence 7777777777777788877777777777777777777777777777776666666665433111 10111 1112
Q ss_pred HHHHhhhhHHhhhccccccchhHHHHHHHhHHHH
Q 006170 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQ 317 (658)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eq 317 (658)
-...+.+...+..+.....+...+...|...+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 647 (1111)
T PF13514_consen 614 LEAAEELRAARAELEALRARRAAARAALAAALAA 647 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444445555555555555555555544433
No 298
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=37.69 E-value=6.3e+02 Score=28.29 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhc-------C-----ChhH
Q 006170 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES-------T-----KNSE 335 (658)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~-------s-----~esE 335 (658)
+-|=.+...+.|++..+.-++.++.++..+.+...+=.....+++..+ .+.+-.....+.. + +.+=
T Consensus 116 ~DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 193 (412)
T PF04108_consen 116 YDFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL--INKRLKDYELLAPFQSSLGSSPSSSSSNPL 193 (412)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhhhhccccccccCCCCCccccccc
Confidence 446677788999999999999999999999988887666666666655 1222111221110 0 0233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQ 358 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~ 358 (658)
...+-+-+.+||.++...-+.|.
T Consensus 194 ~~~i~~~l~~le~ema~lL~sLt 216 (412)
T PF04108_consen 194 MSTILKELHSLEQEMASLLESLT 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777766666555544
No 299
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=37.66 E-value=5.3e+02 Score=27.41 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=5.0
Q ss_pred CCCCcceecc
Q 006170 575 GKSSSATMYN 584 (658)
Q Consensus 575 ~~~~~~~~~~ 584 (658)
+...++.+..
T Consensus 260 ~~Gq~v~i~~ 269 (346)
T PRK10476 260 RVGDCATVYS 269 (346)
T ss_pred CCCCEEEEEE
Confidence 4455555544
No 300
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.29 E-value=2.2e+02 Score=24.35 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
+.+.+++.+..+--.+++.++..+..-|.+|..+++.|+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666666665555443
No 301
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.87 E-value=3.2e+02 Score=31.05 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH------------------HHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------------EQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE------------------~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
.+++..|++++..++.++...+.++..+.+.+.-.+ ..++.+.....-+.+.+.+.-.+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777766555544432110 02333444444444455555555555
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 395 AEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 395 AesKle~LSeTNdELerelk~Les 418 (658)
+..++..+.+.-.++.+++..|.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555555555544443
No 302
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.71 E-value=5.7e+02 Score=29.05 Aligned_cols=17 Identities=47% Similarity=0.620 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 006170 426 KVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqh 443 (658)
|...||.|+-+. +||++
T Consensus 259 R~erLEeqlNd~-~elHq 275 (395)
T PF10267_consen 259 RYERLEEQLNDL-TELHQ 275 (395)
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 667788888776 44444
No 303
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.40 E-value=3.5e+02 Score=32.86 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
-..+++.|+.|+++....|.+...+.....++.+...+++++...|+.+ |-..++.-.++++.-+.+|+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888888888888888888888888888774 445555555555544444443
No 304
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=35.94 E-value=4.8e+02 Score=26.45 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=23.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
.++..+..++..|+..+.+...+......++..+-.++......+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555444444443
No 305
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.98 E-value=2.7e+02 Score=27.38 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006170 339 MKEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (658)
+-.++..+++.++....|...+....+. ..++....+..|+.||.++.+++.-.+.-..+++.
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555544444443322222 23455566667777777777755554444444433
No 306
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.71 E-value=91 Score=26.38 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
||.+|+.++.+-++-..+.......++++.+.+++-.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777776654
No 307
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.50 E-value=1.9e+02 Score=24.63 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (658)
.+++|+..+|..++................+..+..++..|..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666554444333333333334444455555554444
No 308
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=34.21 E-value=1.1e+03 Score=29.94 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006170 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (658)
Q Consensus 462 isdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~k 520 (658)
...+.-.+|.++....++++..|+-..+.- .|..||..+-.+++.|+..+.-
T Consensus 468 ~~~L~d~le~~~~~~~~~~~K~e~~~~~le-------~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 468 NTNLNDQLEELQRAAGRAETKTESQAKALE-------SLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 334445566666777777777777777777 8888888888888888776443
No 309
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=34.03 E-value=1.5e+02 Score=31.80 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
++....++++++..+....++-++|+..|+--+-+++|++-|+.+-.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555556777889999999999999999999988653
No 310
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=3e+02 Score=33.01 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 544 MQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 544 ~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
..+..++++|+..|...+++...|..+|..++
T Consensus 477 ~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 477 RARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444
No 311
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.48 E-value=3.2e+02 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.4
Q ss_pred HHHhhhhHHhhhccccccc
Q 006170 285 EMLGRFQIVQFNLNGSLQR 303 (658)
Q Consensus 285 el~gkLq~~qf~L~as~~R 303 (658)
..+.++|..|..|.....+
T Consensus 10 ~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777666554
No 312
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=33.35 E-value=3.5e+02 Score=27.98 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=61.8
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcC--------------ChhHHH
Q 006170 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVL 337 (658)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s--------------~esEv~ 337 (658)
++|+.+|++.-..+- .|==+. .|.-|..+||.==+.-....+++|.+.+....|.-+. +++|..
T Consensus 5 ~~~~e~ivl~~~~eq-NrP~ss-q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~ 82 (201)
T KOG4603|consen 5 AEDAEGIVLRYLQEQ-NRPYSS-QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQ 82 (201)
T ss_pred ccccHHHHHHHHHHh-cCCCch-HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHH
Confidence 466666666544331 111111 1223444454412334556778888877777766555 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKEel~rAEsRa~t 394 (658)
-|-.++.-|+.++....-......+.+-...+ .+-.|+..|+.|+..+..-++|+.+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554433332222222221111 2335667777788777777766654
No 313
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.30 E-value=2e+02 Score=27.88 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHhHHHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF--QTSQEQLNEMDNFIESLKESLYGAE 389 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~akl--EesE~EVaaLerrIelLKEel~rAE 389 (658)
+.++..|++.+..+..+.+.....|....... ++....|..++..|..+++.+..-.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655544443 3334455555555555555555444
No 314
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.96 E-value=2.5e+02 Score=32.39 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=99.8
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC---------------cchhhhhHHHHHHHHHHHHHHhHhhh
Q 006170 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS---------------NTKKVGILENQLRDLEIQLQQAKVSS 448 (658)
Q Consensus 384 el~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~---------------deEK~~~LE~QLKEa~~QLqhA~asa 448 (658)
++.+-++..+....||. +...++-.+-+.-.+-+.... -+.+...|=.||.++++.+--+....
T Consensus 59 ~v~~l~e~~~~~~~~rn-ae~ea~~v~~e~ed~tss~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql 137 (476)
T KOG4324|consen 59 KVHNLEEKLQLTETKRN-AESEADRVEVELEDLTSSLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQL 137 (476)
T ss_pred HHhcCccchhhcccccC-chhhhccccCCCcchhcccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhh
Confidence 34455555666666663 555555555554444433221 14556777777777775554444333
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 449 Eas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
..-+. |.. +++-+.=-+-|+..|.++.+..-.--++|-+||..-..+..|+.-+. +++..- --+.
T Consensus 138 ~~Lkv---mhs--ms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s~e~~Elt-------~sLf~E---a~Km 202 (476)
T KOG4324|consen 138 DSLKV---MHS--MSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLSQELEELT-------ASLFEE---AHKM 202 (476)
T ss_pred hHHHH---Hhh--cchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH-------HHHHHH---HHHH
Confidence 22222 111 44444555667888888887776667778778777776666665553 333221 1233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (658)
+.++..|-++|+.+.+--...++=|+.++-.++.
T Consensus 203 V~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk~ 236 (476)
T KOG4324|consen 203 VRAANPRQEFIEKQLTESRLKIDVLQAEVNALKT 236 (476)
T ss_pred hhhcccchhhhhhhhhHhHHHHHHHHHHHHHhHH
Confidence 6788899999999999888888888888776653
No 315
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.87 E-value=7.1e+02 Score=27.51 Aligned_cols=203 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 006170 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (658)
Q Consensus 216 iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (658)
|.|.||. =|+.|.-+-.+...|-.+=+........||+.. .-+.+.+.-..-++.-|-.-+++
T Consensus 67 vt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L----------~~~~e~v~qLrHeL~~kdeLL~~ 129 (306)
T PF04849_consen 67 VTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQL----------GAALEQVEQLRHELSMKDELLQI 129 (306)
T ss_pred HHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hccccccch------------------------hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 006170 296 NLNGSLQRE------------------------SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLK 351 (658)
Q Consensus 296 ~L~as~~RE------------------------sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLd 351 (658)
.-+...-.+ .-|..|++..++.-..-..+-.+| ..|-.++.+|-+.| +.
T Consensus 130 ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L----~~et~~~EekEqqL---v~ 202 (306)
T PF04849_consen 130 YSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQL----KTETDTYEEKEQQL---VL 202 (306)
T ss_pred cCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHhhccHHHHHH---HH
Q ss_pred HHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHH
Q 006170 352 ESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILE 431 (658)
Q Consensus 352 es~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE 431 (658)
+.=.|+..|+........+++--......--++|.+=-++......||..++--|.++..-+..-+.. -..|-
T Consensus 203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~-------Q~~L~ 275 (306)
T PF04849_consen 203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKES-------QRQLQ 275 (306)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHH
Q ss_pred HHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHH
Q 006170 432 NQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (658)
Q Consensus 432 ~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~ 467 (658)
.+|++.+ .+|.++-.|++
T Consensus 276 aEL~elq------------------dkY~E~~~mL~ 293 (306)
T PF04849_consen 276 AELQELQ------------------DKYAECMAMLH 293 (306)
T ss_pred HHHHHHH------------------HHHHHHHHHHH
No 316
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.43 E-value=8.8e+02 Score=28.47 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
-|.-..|.+.|-..+-|+...+-++.++-..+.++.+.+++.|+-
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888899999999999999988888888998988874
No 317
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.93 E-value=3.4e+02 Score=23.53 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRL 357 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL 357 (658)
.|.++...++.+++....++
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~ 85 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQL 85 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 318
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=31.61 E-value=3.3e+02 Score=23.24 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN-----ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~-----aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
.+......++..|+..+..+..++.... ..+-....-+..+...|..++..+..++.....+...+..+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 319
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=31.30 E-value=5.7e+02 Score=25.92 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=39.4
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (658)
-+..++.++.+.+.|.......+. .+.+++...+.++..+..+++.....=..+..-...+.+...+....+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~-------~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIE-------RLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666555555555 6666666666666665555554444333222233334444444444444
Q ss_pred HHHHHH
Q 006170 548 TQRELI 553 (658)
Q Consensus 548 ~ErdrL 553 (658)
....++
T Consensus 130 ~~~~~l 135 (302)
T PF10186_consen 130 ERKQRL 135 (302)
T ss_pred HHHHHH
Confidence 333333
No 320
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.25 E-value=4.2e+02 Score=32.19 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr 419 (658)
..+++.|+.|+++....|.+...+.....++.+...+++++.+.|+.+
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888888888888888888888888877764
No 321
>PF13166 AAA_13: AAA domain
Probab=30.90 E-value=9.1e+02 Score=28.14 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcceecc
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 584 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~~~~~ 584 (658)
+..+....+-+...+..+..++..|+.++.+...=-..++..|+.. .+..+.+..
T Consensus 426 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~-g~~~~~l~~ 480 (712)
T PF13166_consen 426 INSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL-GFSNFSLEI 480 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCCeEEEE
Confidence 4445555556677777788888888888887666667888999988 344555543
No 322
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=30.85 E-value=74 Score=30.66 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=21.7
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccc---hhhHHHH--HHHhHhhhhhhH--hhHHHH-----HHHHHHHHH---hh
Q 006170 107 SELREVERLLDTIHVEIVNVHHKISSCKH---LREVFTI--MEKMEKKLHDCE--GSLKES-----QEHVSELKM---QS 171 (658)
Q Consensus 107 sEv~ele~~~~~lq~~I~~~~~~~~s~~~---~~~~f~~--~~~~~~kL~~~~--~sLkq~-----qe~~~eik~---qs 171 (658)
+||.+|=.-+..+..+|.-.-.++-|-.| .-++|.| |+.|-++++.|+ ..|.+. ..+|+.=.. ..
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~~~~~ 85 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEEDSKG 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCCCCCC
Confidence 34444444444444444444333333333 2334444 555566666652 111111 223322222 24
Q ss_pred HhhhhhhhhcccCCCccc
Q 006170 172 AKFQRVLSYFIHGNNDEA 189 (658)
Q Consensus 172 a~f~r~~~~~~~~~~~~~ 189 (658)
.+|++ -+|.||++||.
T Consensus 86 ~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 86 SSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp ------------------
T ss_pred CCCcc--cCCCCCCCCch
Confidence 78888 34679999886
No 323
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.75 E-value=8e+02 Score=27.84 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
..-|+-.|--++|+--+-|-.++.....|-+-++-+.+|+||++
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555566666554
No 324
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.99 E-value=5.7e+02 Score=25.53 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH--Hhh--HHHHHHhHHHH
Q 006170 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK--AAS--AKEVNHRTKLM 539 (658)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~k--e~t--lKeae~Rak~a 539 (658)
++..=++++|.++...-...+..+.++. ..|.+|-..-...+.+++.. ..| |+++..+--..
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~er--------------~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRER--------------QARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555666555555444444444 77777775555566565543 344 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 006170 540 MEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~k 561 (658)
..-..+|...||.|+..+..+.
T Consensus 97 re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888877766544
No 325
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.94 E-value=9.5e+02 Score=28.04 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 006170 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (658)
Q Consensus 394 tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk 473 (658)
.+..|+..+.++-.+|..+-+.|-++- ||.+-+... +..+.+.+.-- .=+.+.+.+...=|++.-
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~i---------le~k~~~f~---~~~~~~l~~ll---~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRI---------FEHSNRRVD---EQNRQSLNSLL---SPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 456677788888888887777666652 222221111 00000000000 011223333333333222
Q ss_pred hhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHH
Q 006170 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (658)
Q Consensus 474 ~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lks 513 (658)
.+ +++.| -+...++.-|.+.|..+..|=..+.+-||.
T Consensus 161 ~~--~~~~~-~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 161 GK--EAQER-HTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22 33333 334455777777777777777777666653
No 326
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.87 E-value=8e+02 Score=27.20 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr 419 (658)
-+.....++.-|+.++..-..|+..|...|..|-++.....-...-+..+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~ 122 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR 122 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc
Confidence 34455556666666666666666666666666666655554444333333
No 327
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=29.77 E-value=3.9e+02 Score=23.77 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=39.5
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhh
Q 006170 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 477 (658)
Q Consensus 405 TNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~ 477 (658)
++.++..-.+.|++ -+..++.+|.+. +.|+.+++.+-.+=+.--.++.+--..|.+++.++.
T Consensus 33 ~~~e~~~~~~eL~~-------~l~~ie~~L~DL----~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 33 SSEELKWLKRELRN-------ALQSIEWDLEDL----EEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp -HHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555 367788888764 588888888866222223577777788887776654
No 328
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=29.69 E-value=2.8e+02 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (658)
.+.|.-||+|+..|+.+|.++..+|+.++..|.=+++.-+=|+.
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llqs 217 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQS 217 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888777666544444333333
No 329
>PRK12704 phosphodiesterase; Provisional
Probab=29.56 E-value=9.5e+02 Score=27.96 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=4.5
Q ss_pred HhHHHHhhHHHH
Q 006170 521 ANIEKAASAKEV 532 (658)
Q Consensus 521 A~q~ke~tlKea 532 (658)
|...-+..++.|
T Consensus 182 ~~~~a~~~a~~i 193 (520)
T PRK12704 182 AKEEADKKAKEI 193 (520)
T ss_pred HHHHHHHHHHHH
Confidence 333333334333
No 330
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.97 E-value=1.4e+03 Score=29.55 Aligned_cols=206 Identities=18% Similarity=0.216 Sum_probs=110.5
Q ss_pred hhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccch-------HHHHhhhhHHHHhhhhHHhhhcccc
Q 006170 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENS-------AEVLMGISKEMLGRFQIVQFNLNGS 300 (658)
Q Consensus 228 ldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa-------~EvL~g~skel~gkLq~~qf~L~as 300 (658)
|+|=|.+..++.--.+|..+|..+..+.--.---+..+..++--.+|- .+.|....+-.-|....+|-.+..-
T Consensus 667 Le~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k 746 (1200)
T KOG0964|consen 667 LELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPK 746 (1200)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Confidence 444555555555555555555444444433333344444444444443 3445555555556666666666554
Q ss_pred ccchhHHHHHHHhHHHHHhhhhHHHH-----HhhcCChhHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhh-----
Q 006170 301 LQRESELKSKLGDFIEQLKAKDMVLQ-----KLESTKNSEVLTMKEKVKSLEEQLKESEIR---LQNANACFQTS----- 367 (658)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~le-----kl~~s~esEv~sLqkKvksLE~qLdes~eQ---L~~A~aklEes----- 367 (658)
+..=.+++-.|.....|.+..+..+- .|.....+.+..|.+++..+-.+++.+... +...+..+++.
T Consensus 747 ~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL 826 (1200)
T KOG0964|consen 747 GKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKL 826 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333334333333333222221 111112344556666666666666543322 22233333331
Q ss_pred -------HHHHHh-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH
Q 006170 368 -------QEQLNE-----MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (658)
Q Consensus 368 -------E~EVaa-----LerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLK 435 (658)
+++|.+ ........+.++...+-|.+.|-..+..+...-+..+.+.+.+++- -|++..||++.+
T Consensus 827 ~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~----lE~~~~lek~~~ 902 (1200)
T KOG0964|consen 827 YKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKE----LEKAKNLEKEKK 902 (1200)
T ss_pred HhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 445553 4556778888888889999999888888888888777777766652 466777777666
Q ss_pred HH
Q 006170 436 DL 437 (658)
Q Consensus 436 Ea 437 (658)
-.
T Consensus 903 ~~ 904 (1200)
T KOG0964|consen 903 DN 904 (1200)
T ss_pred hh
Confidence 54
No 331
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=28.88 E-value=8.5e+02 Score=27.14 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNA----NACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A----~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA 395 (658)
++=+..+++++..+++++...-.+...+ ...++.+...+..|-.+|.+++++-.++|.-...-
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i 90 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI 90 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777665554422 23344455566666666666666666555544333
No 332
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.80 E-value=2.2e+02 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLde 352 (658)
.+.+.++....||..++..|..|..+ ...+-.|+.++..|+.+.++
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888875 56666778887777777763
No 333
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.79 E-value=1.2e+02 Score=27.98 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=42.5
Q ss_pred hhhHHHHHhHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006170 365 QTSQEQLNEMDNFIESLKESL-YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 365 EesE~EVaaLerrIelLKEel-~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (658)
+..+.....++..+++|-..| ..|=.-...|.-....+..-|..+.+.++..+. +++.|..||+..+..+++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-------~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-------LLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-------CCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 334555556666666665555 455555555555555666666666666665444 367777777777744433
No 334
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.71 E-value=2.4e+02 Score=27.00 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhhHHHHHhHHHHHHHHHHHH
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQNANA----CFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~a----klEesE~EVaaLerrIelLKEel 385 (658)
+.+|+.+++.+..++++|+..-....+ .+++....+.+++..+..+|+++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777788888888776665433222 22333444444444444444444
No 335
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.63 E-value=1.9e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 369 EQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
+.+.++..-++--+++-.||-+|+++
T Consensus 45 ~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 45 QDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444445555555555543
No 336
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.62 E-value=3.4e+02 Score=30.82 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=42.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh-hhhhhhhhhhcccchhhHH
Q 006170 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK-TESVEEQCIVLSEDNFELK 501 (658)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~R-aE~aEsKc~~Lse~N~ELe 501 (658)
..+++..|+.+|++++.++..+..-..+.+. ...+++.+.......-.. +.....-.. ++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 130 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKA-----------LAKFLEDIREGLTEPIKDSAKRNEPDLK-------EWF 130 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhccccccccccCCCCHH-------HHH
Confidence 4678888888888887555555443333332 223444332211100000 000011122 567
Q ss_pred HHHHHHHhhHHHHHHHHHHHhHHHH
Q 006170 502 NKQSFMRDKIKILESSLNRANIEKA 526 (658)
Q Consensus 502 EEL~~l~s~lksLE~sl~kA~q~ke 526 (658)
+=+.+++.++..+-.....+..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 131 QAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666555554443
No 337
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=28.51 E-value=8.2e+02 Score=30.43 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=66.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
.+|.+-|-|++.-|...+-. ++|+. |..-. .+-+=|+-.|++.+ -+|++||+|+-..++
T Consensus 393 rsENaqLrRrLrilnqqlre-qe~~~----k~~~~----~~~n~El~sLqSlN-------~~Lq~ql~es~k~~e----- 451 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE-QEKAE----KTSGS----QDCNLELFSLQSLN-------MSLQNQLQESLKSQE----- 451 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHhhc----ccCCC----cccchhhHHHHHHH-------HHHHHHHHHHHHhHH-----
Confidence 45666677776666555433 12211 11111 22233445566653 478899998762222
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh-----hhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 006170 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT-----ESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (658)
Q Consensus 448 aEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~Ra-----E~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~ 522 (658)
.+-..-..++.|||-++.+--|-..-. +..|.|-. ..-.+..+.-|+...=.+++++.-+|+.+.
T Consensus 452 ---------~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~-~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 452 ---------LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ-FDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 233344455556655554433322111 11111111 111111333444444446677766666655
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006170 523 IEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 555 (658)
Q Consensus 523 q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLed 555 (658)
-+.. ...-++.|--.||.||.+
T Consensus 522 kEN~-----------iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 522 KENQ-----------ILGITLRQRDAEIERLRE 543 (861)
T ss_pred hhhh-----------HhhhHHHHHHHHHHHHHH
Confidence 4443 333444455555555543
No 338
>PRK10698 phage shock protein PspA; Provisional
Probab=28.39 E-value=6.7e+02 Score=25.84 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 518 LNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 518 l~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
...|..+|..| +..++....-....|.+|...+.+|+..|...+.+.+.|.....-
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 445555566777788888888888888888888888877666653
No 339
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=28.09 E-value=6.6e+02 Score=25.66 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s 559 (658)
.|.-|+..+...+.-|+..+.-++.+-+=| ..|-++...-+..+..++..|++.|..
T Consensus 154 ~l~ae~~~l~~~~~~le~el~s~~~rq~L~----~~qrdl~~~~~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELLSNNNRQELL----QLQRDLLKARIQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888777777665 345566666677777777777777665
No 340
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.06 E-value=7.6e+02 Score=26.35 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=17.6
Q ss_pred hhHHHHHHh-HHHHHHHHHHHHHHHHHHHHH
Q 006170 527 ASAKEVNHR-TKLMMEMVMQLATQRELIQKQ 556 (658)
Q Consensus 527 ~tlKeae~R-ak~aE~lV~KL~~ErdrLedQ 556 (658)
+|.|+.-.+ -++-.|.+..|+.+.+++..+
T Consensus 82 eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 82 ETTKDFIDKTEKVHNDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 344554444 345566677777777766544
No 341
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.04 E-value=6.8e+02 Score=25.76 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=5.8
Q ss_pred hhhHHHHHHHH
Q 006170 427 VGILENQLRDL 437 (658)
Q Consensus 427 ~~~LE~QLKEa 437 (658)
+..|+.|+...
T Consensus 86 l~~L~~qi~~~ 96 (251)
T PF11932_consen 86 LASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 342
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.84 E-value=1.9e+02 Score=33.52 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (658)
.-|.|...||++|+...-.++.........+++|..++..|..|+..+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665543333222333333444444444444444444
No 343
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.82 E-value=99 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred hhhhhcccchhhHHHHHHHHHhhHHHHHHHH
Q 006170 488 EQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (658)
Q Consensus 488 sKc~~Lse~N~ELeEEL~~l~s~lksLE~sl 518 (658)
.++..|+..|..|..++..+...+..|....
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345556666677777777777777776554
No 344
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=27.73 E-value=6.8e+02 Score=28.00 Aligned_cols=113 Identities=22% Similarity=0.251 Sum_probs=59.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHH--HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHH
Q 006170 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI--WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 502 (658)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei--sdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeE 502 (658)
-|+..||+.|.+.+ ..+..-+-.||-+..-+ +-.+-.||+|+.|++--- .++.- .+++
T Consensus 191 akVA~LE~Rlt~lE-------~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~------~~~ld-------~vEq 250 (371)
T KOG3958|consen 191 AKVAELEKRLTELE-------TVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALD------LAVLD-------QVEQ 250 (371)
T ss_pred HHHHHHHHHHHHHH-------HHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhC------HHHHH-------HHHH
Confidence 58999999998876 33333233344333321 234556788888866211 12222 4555
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHhH
Q 006170 503 KQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLM----MEMVMQLATQRELIQKQVYS 559 (658)
Q Consensus 503 EL~~l~s~lksLE~sl~kA~q~ke~t------lKeae~Rak~a----E~lV~KL~~ErdrLedQL~s 559 (658)
-|..+-+++... +--++++..-..+ +=|+-.|...| -.+|.++ .-+.+||.|...
T Consensus 251 RL~s~lgK~~~I-aEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl-~al~~LHeqa~~ 315 (371)
T KOG3958|consen 251 RLQSVLGKVNEI-AEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRL-VALKQLHEQAMQ 315 (371)
T ss_pred HHHHHHHHHHHH-HHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHH-HHHHHHHHHHHH
Confidence 666666666643 1123333332222 34444443322 3456666 567788887544
No 345
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.65 E-value=6e+02 Score=28.35 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006170 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (658)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~L 416 (658)
-+|+.++.+=.+...+..++..+..++..++++..+..++++.+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667777777788888899999999999999988888888744
No 346
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.46 E-value=1.4e+03 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (658)
.+....+.+.++..+--|..|...|.+||.+++.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555
No 347
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.34 E-value=5.8e+02 Score=24.69 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=52.7
Q ss_pred HHHHHHHHhhHHHHHHHHHH----HhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCC
Q 006170 501 KNKQSFMRDKIKILESSLNR----ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (658)
Q Consensus 501 eEEL~~l~s~lksLE~sl~k----A~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~ 576 (658)
..+-..+.+++|..+....+ ..+++..++|-++.=.+ |..+...+.+++.-+.....-...|+.-|-..++
T Consensus 48 a~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k-----v~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~R 122 (131)
T PF10158_consen 48 AFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK-----VNELSQQLSRCQSLLNQTVPSIETLNEILPEEER 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhc
Confidence 34444556666665555443 34556666665553333 7777788888888777777777778888888888
Q ss_pred CCcceecc
Q 006170 577 SSSATMYN 584 (658)
Q Consensus 577 ~~~~~~~~ 584 (658)
=+||.++.
T Consensus 123 Lep~~~~~ 130 (131)
T PF10158_consen 123 LEPFVWTT 130 (131)
T ss_pred CCCCCCCC
Confidence 88887753
No 348
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=26.88 E-value=2.5e+02 Score=30.05 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhHhH
Q 006170 429 ILENQLRDLEIQLQQAKVSSEAS 451 (658)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas 451 (658)
.++.++.+++.+++.|.+-.+.+
T Consensus 103 ~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 103 EVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554454444444333
No 349
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.69 E-value=4.5e+02 Score=27.40 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
||..|+++-..+.+|..++=.|... +..+.-++...+.++......+..-...++.++.++.-..+.++.|.+++-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~q----l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQ----LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 5666666666666655554444332 233333444444444444444444444555555555555555555555443
No 350
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.56 E-value=4.8e+02 Score=23.52 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
.|+.=+.-+...+..||...+.-....... .+++.+..-+..--.+|+.+.|........+..-|+.++..|+.
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888887766655554 45555556666666777777777777777788888888777763
No 351
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.46 E-value=2.2e+02 Score=27.30 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesr 419 (658)
.+++...-|++|++++.+.|.-++.-...+..+.+++.-+.++++....+
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556777777777777777777777777777777777766654443
No 352
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.30 E-value=4.2e+02 Score=26.12 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHhHHHHHH
Q 006170 461 AIWDMETLIE 470 (658)
Q Consensus 461 eisdme~vIE 470 (658)
-+.|.-++|-
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 353
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.07 E-value=1.1e+02 Score=25.26 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcCCCCcc
Q 006170 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSA 580 (658)
Q Consensus 543 V~KL~~ErdrLedQL~s~keenK~L~ekLd~~~~~~~~ 580 (658)
..++..++..|+.++..++.+|..|..+++..+.++.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ 56 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDY 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45677888888888888888888888888877545443
No 354
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=25.90 E-value=3e+02 Score=31.42 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~r 387 (658)
+.+..||+-+...|.||-.+...|.+|....|.- +..|++++.+|.+||..+..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888899999998888888887776552 56888999999998888765
No 355
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.52 E-value=4e+02 Score=29.34 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=52.7
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCCh
Q 006170 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (658)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (658)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP 164 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRP 164 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34578889999999999999999999999999999999988888888888899988854
No 356
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.47 E-value=8e+02 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHHhhhHH
Q 006170 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (658)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkys 460 (658)
++++-.-++.||+.|+..||-.+.+++-.+.
T Consensus 352 ~~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 352 YNKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 3444445556666666888888775554443
No 357
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.37 E-value=86 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q 006170 367 SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (658)
.|+.++.||.+++..|.....||.|+..+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388888999999999999999998887754
No 358
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.97 E-value=6.4e+02 Score=26.60 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
|.+..|.+.++...+.++|..|.+..+
T Consensus 184 l~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 184 LKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334444444444445555655555554
No 359
>PRK00295 hypothetical protein; Provisional
Probab=24.97 E-value=3.6e+02 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 006170 540 MEMVMQLATQRELIQKQVYSLTSENKLLV 568 (658)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (658)
-+.|.+.++++++|+.++..+..+.+.+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888999999999999988888865
No 360
>PF13166 AAA_13: AAA domain
Probab=24.79 E-value=1.2e+03 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=13.4
Q ss_pred ccccccCcccccccccchhhhhhhee
Q 006170 25 EVTLSSGIDMQEKQIDCTMTVLTRVD 50 (658)
Q Consensus 25 ~~~~s~g~~~~~~~~~~~~~~lt~ve 50 (658)
..+.-+|.-+.|+ .+...+|..+.
T Consensus 17 ~~n~IYG~NGsGK--Stlsr~l~~~~ 40 (712)
T PF13166_consen 17 KINLIYGRNGSGK--STLSRILKSLC 40 (712)
T ss_pred ceEEEECCCCCCH--HHHHHHHHHHh
Confidence 3444455333343 66677877764
No 361
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.64 E-value=5e+02 Score=23.11 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHhHHHHHhhhh---HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhhHHHHHhHHHHHHHH
Q 006170 308 KSKLGDFIEQLKAKD---MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANAC---FQTSQEQLNEMDNFIESL 381 (658)
Q Consensus 308 ~sKL~~~~eqL~~k~---~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~ak---lEesE~EVaaLerrIelL 381 (658)
+...+...+.+..|. ..++.+-.- +.+...++.++..|-.+......++..++.. .++.-.++..+...|..+
T Consensus 8 r~n~e~v~~~l~~R~~~~~~vd~i~~l-d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 8 RENPEEVRENLKKRGGDEEDVDEIIEL-DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 344455555555554 223333332 4455555555555555555555554444432 222244555666666666
Q ss_pred HHHHHhhhhhHH
Q 006170 382 KESLYGAESRAE 393 (658)
Q Consensus 382 KEel~rAEsRa~ 393 (658)
+.++...+.++.
T Consensus 87 e~~~~~~e~~l~ 98 (108)
T PF02403_consen 87 EEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665555555544
No 362
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.60 E-value=4.9e+02 Score=22.95 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=51.0
Q ss_pred ccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHH
Q 006170 133 CKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQ 212 (658)
Q Consensus 133 ~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eq 212 (658)
++.+..+|-.+..+.. |..-+-+++-..+..||....+...++..+.... .|.++
T Consensus 2 ~e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~ee 56 (83)
T PF07544_consen 2 IEFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEE 56 (83)
T ss_pred ccccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHH
Confidence 3444455655521111 1455677888889999988888877776644211 37788
Q ss_pred HHHHHHHHHHHhhhhhhhHHhh
Q 006170 213 QRHILRMLEKSLARELDLEKKI 234 (658)
Q Consensus 213 qR~iLrMLekSlA~EldLEKkL 234 (658)
|-..++.||..+++--.+=.++
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998876654443
No 363
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=24.44 E-value=3.7e+02 Score=21.45 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
++.....+...+.-.-..-.+|..-+..|..+...+.+|..++..+..++..+.+.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333344456777778889999999999999999999888877654
No 364
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.38 E-value=1.1e+03 Score=27.13 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHhhHHHhhhHHHHHhhhhhhhHHHHHHH
Q 006170 231 EKKISELNQNEEQLKLKLHHTEQVAFRME 259 (658)
Q Consensus 231 EKkL~es~~~eeeLk~kL~~~eqe~~~lE 259 (658)
||+=.-+-...+.|.-||++-.+-.+-+|
T Consensus 90 EkkNqksahtiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 90 EKKNQKSAHTIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666777777777777666666
No 365
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.06 E-value=2.1e+02 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=51.2
Q ss_pred Hhhhhhh-hHHhhHHHhhhHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 006170 223 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (658)
Q Consensus 223 SlA~Eld-LEKkL~es~~~eeeLk~kL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (658)
|+|.|+| ||.++..-+...+...-+|+.. .+...-||+....+.+++-.-|+-+..|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5778875 9999999999888888888764 4568899999999999999999999988874
No 366
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.97 E-value=5.2e+02 Score=22.99 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=42.2
Q ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHH
Q 006170 496 DNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQL 546 (658)
Q Consensus 496 ~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL 546 (658)
.-.+|..-|..+..-|.+|+.+..-+...-.+| ..++..|..|+.++-.++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888988888877777776 889999999998887766
No 367
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=23.70 E-value=1.2e+03 Score=27.00 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006170 310 KLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (658)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (658)
-++.+++++..-...|-.+... +..++..+..=+..||.||-+.+.+|......+-..--+|..+.++|.-|+..
T Consensus 250 ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~Q 329 (434)
T PRK15178 250 DVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQ 329 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Confidence 3444444444444444444443 45666666667777777777777666655443322223444444444444444
Q ss_pred HHh
Q 006170 385 LYG 387 (658)
Q Consensus 385 l~r 387 (658)
|..
T Consensus 330 Ia~ 332 (434)
T PRK15178 330 IGE 332 (434)
T ss_pred HHH
Confidence 433
No 368
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.53 E-value=9.3e+02 Score=26.87 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhcCCccccccC
Q 006170 62 NLHVLLMYLLARGDDLETLVME 83 (658)
Q Consensus 62 NL~~l~M~l~~~~~d~E~~~~~ 83 (658)
.|.-.+|..+. .+|+++--.
T Consensus 47 ~L~~WL~~~~g--~~f~~p~e~ 66 (359)
T PF10498_consen 47 SLCAWLISKAG--RKFEQPQEY 66 (359)
T ss_pred HHHHHHHHhcC--CCCCCCccc
Confidence 46666777665 778855443
No 369
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.50 E-value=1.5e+03 Score=28.06 Aligned_cols=343 Identities=21% Similarity=0.259 Sum_probs=175.7
Q ss_pred HhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHH-----HHHHhHhhhhhhHhhHHHH----HHHHHHHHHh
Q 006170 100 LLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFT-----IMEKMEKKLHDCEGSLKES----QEHVSELKMQ 170 (658)
Q Consensus 100 lL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~-----~~~~~~~kL~~~~~sLkq~----qe~~~eik~q 170 (658)
-|+.-++-=---|..+-+-|--.=....+|+.+-.+++..|. .+.-|.+|--..++.||-- .+.+..+|.|
T Consensus 260 ~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~q 339 (739)
T PF07111_consen 260 ALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQ 339 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHH
Confidence 444433333333344333333333456678876666554443 2334666666666555422 3344555556
Q ss_pred hHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHH-HHHHHHhhhhhhhHHhhHH--------HhhhH
Q 006170 171 SAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHIL-RMLEKSLARELDLEKKISE--------LNQNE 241 (658)
Q Consensus 171 sa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iL-rMLekSlA~EldLEKkL~e--------s~~~e 241 (658)
-|.+|.-.-. ..|...|| +-|+-.. -|+++|..-.. +....
T Consensus 340 VAsLQeev~s-----------------------------q~qEqaiLq~SLqDK~-AElevERv~sktLQ~ELsrAqea~ 389 (739)
T PF07111_consen 340 VASLQEEVAS-----------------------------QQQEQAILQHSLQDKA-AELEVERVGSKTLQAELSRAQEAR 389 (739)
T ss_pred HHHHHHHHHH-----------------------------HHHHHHHHHHHHhHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666654422 12222332 2333332 24555544332 22222
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh
Q 006170 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK 321 (658)
Q Consensus 242 eeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k 321 (658)
..++.+-...+...+.+=+++.++.. |++ -=+-..+..+.||.+..+-|+-+..|=.= +--|-++
T Consensus 390 ~~lqqq~~~aee~Lk~v~eav~S~q~-~L~------s~ma~ve~a~aRL~sL~~RlSyAvrrv~t--------iqGL~Ar 454 (739)
T PF07111_consen 390 RRLQQQTASAEEQLKLVSEAVSSSQQ-WLE------SQMAKVEQALARLPSLSNRLSYAVRRVHT--------IQGLMAR 454 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHhHHHHHHhcccch--------hHHHHHH
Confidence 33444444455555555555444433 332 23344566667777777777755444322 2334466
Q ss_pred hHHHHHhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 322 DMVLQKLEST----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 322 ~~~lekl~~s----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
..+|..+... ..+.+-+|+--+++|=++-|....+|+.. -.++..+|-+|-+ ..++
T Consensus 455 k~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlS-----------------a~liqqeV~~ArE---qgea 514 (739)
T PF07111_consen 455 KLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLS-----------------ARLIQQEVGRARE---QGEA 514 (739)
T ss_pred HHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHH---HHHH
Confidence 7777766654 25778888888888888888877777644 2345555666655 4556
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHH-HHhhhh
Q 006170 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE-DLKSKV 476 (658)
Q Consensus 398 Kle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIE-dLk~Kl 476 (658)
..-.+++.+.+|+..+..-. +-+..++.||..++..++.+.-.++. +..++.+.-.+.+ .|+.|+
T Consensus 515 E~~~Lse~aqqLE~~Lq~~q-------e~la~l~~QL~~Ar~~lqes~eea~~-------lR~EL~~QQ~~y~~alqekv 580 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQ-------ESLAELEEQLEAARKSLQESTEEAAE-------LRRELTQQQEVYERALQEKV 580 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777765221 22344445555544333333222211 2334444444444 566777
Q ss_pred hhhhhhhhhhhhhhh-hcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 006170 477 SKAESKTESVEEQCI-VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (658)
Q Consensus 477 ~rAE~RaE~aEsKc~-~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t 528 (658)
+..|+| |+ .|++.-.-||+==+-...-+.+|--...+|..+|+..
T Consensus 581 sevEsr-------l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~ 626 (739)
T PF07111_consen 581 SEVESR-------LREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERN 626 (739)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 766655 43 2344444444444444445555655555555555444
No 370
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.49 E-value=8.8e+02 Score=25.52 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhc
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQKLES 330 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~ 330 (658)
++..++..+..++......++.+..
T Consensus 78 ~~~~~l~~~~a~l~~~~~~l~~~~~ 102 (331)
T PRK03598 78 PYENALMQAKANVSVAQAQLDLMLA 102 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555555555555554443
No 371
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.46 E-value=4.4e+02 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (658)
+.|..-|++++..++.++..++..|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356777888888888888888877654
No 372
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.32 E-value=5.6e+02 Score=23.20 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=44.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (658)
.+..++..+..-+.+..+|..|+............--..+...+..|++. ...++.+|..+.
T Consensus 47 ~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~-------~~k~e~~l~~~~ 108 (126)
T PF13863_consen 47 DVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE-------ISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44466777788888888888888888777777777777777777777764 455666666554
No 373
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=23.27 E-value=1.1e+03 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRL 357 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL 357 (658)
--.+..||+|+.+...+|++.+..-
T Consensus 61 a~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 61 AQTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566677777777777777766543
No 374
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=23.24 E-value=9.9e+02 Score=26.03 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=49.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHH-HHH
Q 006170 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM-VMQ 545 (658)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~l-V~K 545 (658)
.-+++.++++.-..+. .|+++|..|. |..+ ++|+|.+.+++-..+...- +-.-.++...+ .-+
T Consensus 30 k~me~~q~kL~l~~~e---------~l~~s~~ql~--ll~~--~~k~L~aE~~qwqk~~pei---i~~n~~VL~~lgkee 93 (268)
T PF11802_consen 30 KDMEECQNKLSLIGTE---------TLTDSDAQLS--LLMM--RVKCLTAELEQWQKRTPEI---IPLNPEVLLTLGKEE 93 (268)
T ss_pred HHHHHHHHHHhhcCCC---------CCCCcchhHH--HHHH--HHHHHHHHHHHHHhcCCCc---CCCCHHHHHHHHHHH
Confidence 3456777888755433 5778887666 4444 8899999888876665543 11111111111 123
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekL 571 (658)
|++-+-.|+.-|+..+.+|+.|.+.+
T Consensus 94 lqkl~~eLe~vLs~~q~KnekLke~L 119 (268)
T PF11802_consen 94 LQKLISELEMVLSTVQSKNEKLKEDL 119 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544443
No 375
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=22.84 E-value=3.3e+02 Score=31.91 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LS 403 (658)
.++++++.+|..+...+.++....+.+... ...++.+...++.++.+++.+..|-.....+++++.
T Consensus 560 ~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 560 PLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555443333333211 114555555555555555555555555555444443
No 376
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.63 E-value=5.7e+02 Score=23.03 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs 420 (658)
+..+++.+.|.+.-...|-.|+..+....+-+.-+++.|....
T Consensus 26 ~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 26 LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5566677777777777788888888888888888877776653
No 377
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=22.49 E-value=1e+03 Score=25.77 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=76.4
Q ss_pred HHHHhhhhHHHH----hhhhHHhhhccccccchhHHHHHHHhHHHHHhhh----hHHHHHhhcCChhHHHHHHHHHHHHH
Q 006170 276 AEVLMGISKEML----GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLESTKNSEVLTMKEKVKSLE 347 (658)
Q Consensus 276 ~EvL~g~skel~----gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~lekl~~s~esEv~sLqkKvksLE 347 (658)
-++++|+..-+- .+|+..+.+|+...-++..=.++|+.-.++|+++ ...|.-|.--+|.|..--.=++..|.
T Consensus 47 y~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~ 126 (258)
T PF15397_consen 47 YDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLV 126 (258)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345555544442 3578888888888888777777777777777765 22222232226677666666888888
Q ss_pred HHHHHHHHHHHHhHhhhhh-hHHHHHhHHHHHHHHHHHHHhh
Q 006170 348 EQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGA 388 (658)
Q Consensus 348 ~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKEel~rA 388 (658)
.+++.....-++=...+.+ ...+.+.|.+.++.-+++|..+
T Consensus 127 rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~ 168 (258)
T PF15397_consen 127 RQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSS 168 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877765554444443 4778899999999988888773
No 378
>PLN03188 kinesin-12 family protein; Provisional
Probab=22.46 E-value=1.9e+03 Score=28.98 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
++-|..-|.+.-+.|-.||+++-+..+.|.. |==|+.+-++.+.-|+.|+..|+...+.|-+--+.|+|
T Consensus 1171 reker~~~~~enk~l~~qlrdtaeav~aage-----------llvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkr 1239 (1320)
T PLN03188 1171 REKERRYLRDENKSLQAQLRDTAEAVQAAGE-----------LLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKR 1239 (1320)
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888877776632 33345555556666666666665555554444444444
No 379
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=22.31 E-value=1.1e+03 Score=26.02 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=16.7
Q ss_pred hhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHh
Q 006170 405 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (658)
Q Consensus 405 TNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (658)
+..+++|..+..+. +......++....++..++.+++.|
T Consensus 139 a~~~~~R~~~L~~~-g~iS~~~ld~a~~~~~~a~a~l~~a 177 (390)
T PRK15136 139 AQSDLNRRVPLGNA-NLIGREELQHARDAVASAQAQLDVA 177 (390)
T ss_pred HHHHHHHHHHHHHC-CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555553433 3333333444444444444333333
No 380
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.10 E-value=6e+02 Score=23.04 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=41.1
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 006170 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (658)
Q Consensus 458 kyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ 524 (658)
+...+..-..++.+-..+..+|..|++....... +.+.||..+...+..|.....+....
T Consensus 44 l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~-------~k~~ei~~l~~~l~~l~~~~~k~e~~ 103 (126)
T PF13863_consen 44 LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKE-------EKEAEIKKLKAELEELKSEISKLEEK 103 (126)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777777888888888887777777 77777777777777666555544443
No 381
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.97 E-value=2e+02 Score=35.35 Aligned_cols=157 Identities=15% Similarity=0.209 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
+.+++..++..+..++.....+..+-. +-+++..+++-.+...+........||...+....++..
T Consensus 426 ~~s~~~~~~~~l~~~~s~~~~l~~~~~--------------~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~ 491 (847)
T KOG0998|consen 426 KTSPVLELANELSNLASTSQQLPAQKD--------------TVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDN 491 (847)
T ss_pred cccccccchhhhhhcchhhhccccccc--------------hhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccc
Confidence 455555565555544444443333222 334557777777788888888888999999999889988
Q ss_pred HhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
.++.+..+-..+..=+..++++|.++..|+ +++-..+...+.-||.|+..+.-...+.....+||.
T Consensus 492 ~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~--------------~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~ 557 (847)
T KOG0998|consen 492 DLNLLPLQLSNDNREISSLEKELNELQQQL--------------SVLEGSVKAIESQVENLQKELLDLIYEMADTRSKST 557 (847)
T ss_pred hhhhcccccccchhhHHHHHHHHhhhHHHH--------------hHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccch
Confidence 888888887767777888888888876444 123333333333355555555544444445555666
Q ss_pred hcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006170 492 VLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (658)
Q Consensus 492 ~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q 523 (658)
+|..-......-...|+..-...+.
T Consensus 558 -------~l~~~~~~~~~~~~~~~~~~k~~n~ 582 (847)
T KOG0998|consen 558 -------LLDDSFKVGMELFEQLLKGSKLVNG 582 (847)
T ss_pred -------hhhhhhhhhhhhhhhhhhhhhcccc
Confidence 5555444444444444433333333
No 382
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.94 E-value=6.6e+02 Score=23.48 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
++....+++++-+..|...++.|+.+|....+....+...+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777777777777777777776666666554
No 383
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=21.88 E-value=1.2e+03 Score=26.42 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHHHHhhh-------HHHHHHhhcCCCCcceeccCCCCcccccccccCCccccccccc
Q 006170 548 TQRELIQKQVYSLTSENK-------LLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKT 608 (658)
Q Consensus 548 ~ErdrLedQL~s~keenK-------~L~ekLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (658)
+.++.|+-++.--|..|+ .|++..-+-. ..+..|...+|+.+-.--|.+--++.|+...|
T Consensus 197 ~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeR-ssqs~~apssd~e~~~s~~~s~e~lpg~~p~p 263 (426)
T KOG2008|consen 197 KTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEER-SSQSAMAPSSDGEGAESSSTSVEDLPGSKPEP 263 (426)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhh-hhhhccCCCcccccccccccchhhCCCCCCCC
Confidence 455555555555555554 3455555444 33566777788888888888888888876655
No 384
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.26 E-value=1.1e+03 Score=25.91 Aligned_cols=116 Identities=24% Similarity=0.315 Sum_probs=71.9
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHH------------HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHH
Q 006170 370 QLNEMDNFIESLKESLYGAESRAES------------AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~t------------AesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa 437 (658)
.-.-|...++.-|.++..++.-+.. --+||-.|-+-|.|+-+... +-|+..||.
T Consensus 178 ~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s---------~Gria~Le~----- 243 (330)
T KOG2991|consen 178 FFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS---------EGRIAELEI----- 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh---------cccHHHHHH-----
Confidence 4556777777777888877766543 35899999999999877654 124444444
Q ss_pred HHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 006170 438 EIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (658)
Q Consensus 438 ~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~s 517 (658)
.|.-.+.-++.-.-+|..+|+ .+++|-.+|++..+- ++ =|.++|+.-|.++..|+.-
T Consensus 244 --eLAmQKs~seElkssq~eL~d-------fm~eLdedVEgmqsT-------il-------iLQq~Lketr~~Iq~l~k~ 300 (330)
T KOG2991|consen 244 --ELAMQKSQSEELKSSQEELYD-------FMEELDEDVEGMQST-------IL-------ILQQKLKETRKEIQRLKKG 300 (330)
T ss_pred --HHHHHHhhHHHHHHhHHHHHH-------HHHHHHHHHhcchhh-------HH-------HHHHHHHHHHHHHHHHHHH
Confidence 444444555555556666775 455666677654432 55 5666666666555555544
Q ss_pred HHHHh
Q 006170 518 LNRAN 522 (658)
Q Consensus 518 l~kA~ 522 (658)
+.+.+
T Consensus 301 ~~q~s 305 (330)
T KOG2991|consen 301 LEQVS 305 (330)
T ss_pred HHHHH
Confidence 44433
No 385
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=20.93 E-value=1.3e+03 Score=26.67 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=87.6
Q ss_pred hhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhh-HHhhhccccccchhHH
Q 006170 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ-IVQFNLNGSLQRESEL 307 (658)
Q Consensus 229 dLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq-~~qf~L~as~~REsel 307 (658)
||++.+.......++++.+++..-+..+- .|...=+...-|...++.+..-++ ..+. .-++++
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~----------df~~~~~~~~~L~~~~~~l~~eI~d~l~~------~~~~~i 74 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYS----------DFSPSLQSAKDLIERSKSLAREINDLLQS------EIENEI 74 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHh------hccchh
Confidence 78888888888888888888755554332 333333333333334444444331 1111 125778
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH-----HHhHhhhhhhHHHHHhH-------H
Q 006170 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL-----QNANACFQTSQEQLNEM-------D 375 (658)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL-----~~A~aklEesE~EVaaL-------e 375 (658)
..+|.++.+++.....++... ..+..+-+++..+...++.++..+ ..|-..++..+.-+..+ -
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~-----~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~ 149 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEEN-----EQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEEL 149 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCccccc
Confidence 889998888887766666543 445566678888888887777553 34444455544433332 3
Q ss_pred HHHHHHHHHHHhhhhhHHHHH
Q 006170 376 NFIESLKESLYGAESRAESAE 396 (658)
Q Consensus 376 rrIelLKEel~rAEsRa~tAe 396 (658)
+.+..|+.++..--+++....
T Consensus 150 ~i~~~Lk~e~~~lr~~L~~~L 170 (593)
T PF06248_consen 150 KILKLLKDEYSELRENLQYQL 170 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766555554443
No 386
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.83 E-value=9.3e+02 Score=24.79 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=36.3
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH
Q 006170 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (658)
Q Consensus 446 asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~k 525 (658)
..+..++.+.+...++-..++.-++.|+..++..+. -|..|+..+...+..+.+|+.+......-+
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~--------------~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV--------------YNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554444555555555555544444443332 233666666666666666666655555444
Q ss_pred Hhh
Q 006170 526 AAS 528 (658)
Q Consensus 526 e~t 528 (658)
...
T Consensus 101 ~~l 103 (251)
T PF11932_consen 101 QEL 103 (251)
T ss_pred HHH
Confidence 443
No 387
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.65 E-value=5.9e+02 Score=28.09 Aligned_cols=71 Identities=24% Similarity=0.455 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
||.||+.++..|..|+.+++.|.+- +.-+++- =+|++.-.++.|| .|-++..||.-|..+|+-++..+.
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQ----L~RMrED--WIEEECHRVEAQL-----ALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQ----LARMRED--WIEEECHRVEAQL-----ALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5778888887776666655555431 1111110 1233333333333 244455577777777777776665
Q ss_pred hh
Q 006170 387 GA 388 (658)
Q Consensus 387 rA 388 (658)
..
T Consensus 142 ek 143 (305)
T PF15290_consen 142 EK 143 (305)
T ss_pred hh
Confidence 44
No 388
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.54 E-value=9e+02 Score=25.85 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=41.0
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 006170 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ 349 (658)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~q 349 (658)
|....|.++..|..++.+++.-..+=.+|+++|+..-+....+....+ ..=+..|+++++.++.+
T Consensus 48 Lk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~------~dF~~~Lq~~Lk~V~td 112 (230)
T PF03904_consen 48 LKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVH------NDFQDILQDELKDVDTD 112 (230)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhchH
Confidence 445566677777778888777777777788888776665555433322 23334566666666444
No 389
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.52 E-value=5e+02 Score=23.60 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHH
Q 006170 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (658)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~ 506 (658)
++.||..+..| .++|.=+--=|++||.|-......++.+-+.-.-|...|-.|.+|...
T Consensus 6 leqLE~KIqqA---------------------vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 6 FEKLEAKVQQA---------------------IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHH
Q 006170 507 MRDKIKIL 514 (658)
Q Consensus 507 l~s~lksL 514 (658)
-..|+.+|
T Consensus 65 WqerLr~L 72 (79)
T PRK15422 65 WQERLQAL 72 (79)
T ss_pred HHHHHHHH
No 390
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.45 E-value=1.2e+03 Score=26.09 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---------------------HHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---------------------QEQLNEMDNFIESLKESLYGAESRAE 393 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes---------------------E~EVaaLerrIelLKEel~rAEsRa~ 393 (658)
=|+..|.+++.|-++-+..+-.|.-|+.+.-.- .++-.=|+-.+|.|++++.-|| |+.
T Consensus 60 avrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaE-RtA 138 (351)
T PF07058_consen 60 AVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAE-RTA 138 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345566666666666666666665555443220 4567778888999999999886 677
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 394 SAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 394 tAesKle~LSeTNdELerelk~Les 418 (658)
-|++.+. +-+..-+|+|+.
T Consensus 139 kaEaQLk------eK~klRLK~LEe 157 (351)
T PF07058_consen 139 KAEAQLK------EKLKLRLKVLEE 157 (351)
T ss_pred HHHHHHH------HHHHHHHHHHHh
Confidence 7777665 455555666553
No 391
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.41 E-value=8e+02 Score=23.89 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT--------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe--------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe 404 (658)
+.++..++-+...+-.++...+.+|.+-..--+. ..-+...+...|++=..++.+-..+...+..-+.-.-+
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666544332222 24466777777777777777777766666555554444
Q ss_pred hhHHHHHHhhhhhc
Q 006170 405 TNLELSEEINFLKG 418 (658)
Q Consensus 405 TNdELerelk~Les 418 (658)
--..+..+...++.
T Consensus 85 Kl~~~~~~~~~l~~ 98 (177)
T PF13870_consen 85 KLHFLSEELERLKQ 98 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 392
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.37 E-value=2.5e+02 Score=24.37 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=13.0
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 384 SLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 384 el~rAEsRa~tAesKle~LSeTNdELere 412 (658)
+=+.+..++..|-..|..|..-++-+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444444444444333
No 393
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.14 E-value=5.4e+02 Score=26.50 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred HHHHhHHHHHhhhhHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 006170 309 SKLGDFIEQLKAKDMVLQKLEST--KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 309 sKL~~~~eqL~~k~~~lekl~~s--~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (658)
.++...+..|..-+.....-.++ --.++.+++.+++.++.+.+.+..-+..|+ + -+++-..++.+..+..+++
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~----~~d~l~ie~~L~~v~~eIe 179 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-T----VEDLLEIERELSRVRSEIE 179 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C----HHHHHHHHHHHHHHHHHHH
Confidence 56677777776433221111111 246777888888888888888888887665 2 3344455555555555555
Q ss_pred hhhhhHH
Q 006170 387 GAESRAE 393 (658)
Q Consensus 387 rAEsRa~ 393 (658)
..+.+..
T Consensus 180 ~~~~~~~ 186 (262)
T PF14257_consen 180 QLEGQLK 186 (262)
T ss_pred HHHHHHH
Confidence 5444443
No 394
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=20.01 E-value=2.4e+02 Score=32.22 Aligned_cols=67 Identities=18% Similarity=0.269 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh--hhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI--NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LSeTNdELerel--k~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
.|++|.+++..-|..+..|..|+..++++...--.++ ..+..|. .-+..++..|.+.+.||..+++.
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~----~~v~~~~~Ki~elkr~lAd~v~~ 71 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQ----SVVSALQDKIAELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999999999888765443332 3455553 34788888888888777665543
Done!