Query 006170
Match_columns 658
No_of_seqs 97 out of 106
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:52:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.9 3.9E-25 1.3E-29 206.8 9.2 138 374-532 1-138 (147)
2 2efr_A General control protein 99.9 1E-20 3.6E-25 178.6 16.5 121 426-574 1-131 (155)
3 1c1g_A Tropomyosin; contractIl 98.9 1.9E-05 6.4E-10 73.0 34.4 80 337-416 51-130 (284)
4 1c1g_A Tropomyosin; contractIl 98.7 9.9E-05 3.4E-09 68.2 33.0 77 338-414 87-163 (284)
5 2z5i_A TM, general control pro 98.5 1.7E-07 5.9E-12 74.5 6.0 45 531-575 2-46 (52)
6 1i84_S Smooth muscle myosin he 98.4 2.1E-07 7.3E-12 109.3 7.9 8 112-119 666-673 (1184)
7 2efr_A General control protein 98.4 5.1E-06 1.8E-10 78.8 15.7 88 342-443 1-88 (155)
8 1i84_S Smooth muscle myosin he 98.3 3.1E-07 1E-11 108.0 6.2 24 540-563 1143-1166(1184)
9 3u1c_A Tropomyosin alpha-1 cha 98.3 4.7E-06 1.6E-10 73.5 10.4 52 333-384 43-101 (101)
10 1ic2_A Tropomyosin alpha chain 98.1 1.2E-05 4.2E-10 68.1 9.5 71 338-408 3-80 (81)
11 3u59_A Tropomyosin beta chain; 98.0 1.5E-05 5.2E-10 70.0 8.9 52 333-384 43-101 (101)
12 2b9c_A Striated-muscle alpha t 97.7 0.0011 3.9E-08 62.1 15.2 141 286-437 1-141 (147)
13 3u1c_A Tropomyosin alpha-1 cha 97.5 0.0011 3.8E-08 58.4 11.6 81 338-418 6-93 (101)
14 3vkg_A Dynein heavy chain, cyt 97.4 0.019 6.3E-07 74.5 26.5 182 356-571 1921-2107(3245)
15 3u59_A Tropomyosin beta chain; 97.0 0.0059 2E-07 53.6 11.2 81 339-419 7-94 (101)
16 3na7_A HP0958; flagellar bioge 96.7 0.11 3.9E-06 51.4 18.8 144 288-438 11-163 (256)
17 3mud_A DNA repair protein XRCC 96.4 0.0016 5.5E-08 63.0 3.6 46 529-574 116-168 (175)
18 1ic2_A Tropomyosin alpha chain 96.2 0.017 5.8E-07 48.9 8.0 71 286-367 4-74 (81)
19 3vkg_A Dynein heavy chain, cyt 96.1 0.23 8E-06 64.7 21.3 188 308-514 1909-2103(3245)
20 3na7_A HP0958; flagellar bioge 96.1 0.32 1.1E-05 48.2 18.2 56 338-400 29-84 (256)
21 2v71_A Nuclear distribution pr 95.8 0.47 1.6E-05 46.5 17.6 75 485-567 106-180 (189)
22 3o0z_A RHO-associated protein 95.1 1.4 4.8E-05 42.6 17.7 60 423-482 4-63 (168)
23 2v71_A Nuclear distribution pr 93.7 4.2 0.00014 39.9 17.7 56 338-393 21-80 (189)
24 2dfs_A Myosin-5A; myosin-V, in 93.0 2.1 7.1E-05 50.9 17.1 69 363-441 971-1039(1080)
25 2fxo_A Myosin heavy chain, car 92.8 2 6.8E-05 39.0 13.3 107 461-567 14-123 (129)
26 2fxo_A Myosin heavy chain, car 92.2 2.5 8.6E-05 38.3 13.0 79 334-412 34-112 (129)
27 3o0z_A RHO-associated protein 92.0 4 0.00014 39.4 14.8 112 298-416 19-137 (168)
28 3oja_B Anopheles plasmodium-re 91.4 1.4 4.7E-05 47.2 12.1 103 334-443 456-562 (597)
29 3oja_B Anopheles plasmodium-re 90.8 7.3 0.00025 41.6 17.0 76 499-574 506-584 (597)
30 2dfs_A Myosin-5A; myosin-V, in 90.5 5.7 0.0002 47.3 17.2 20 52-71 453-475 (1080)
31 3mtu_E Head morphogenesis prot 87.6 0.45 1.5E-05 40.8 3.9 29 546-574 42-70 (77)
32 3bas_A Myosin heavy chain, str 82.0 9.7 0.00033 32.6 9.7 28 392-419 58-85 (89)
33 2ocy_A RAB guanine nucleotide 80.6 28 0.00095 33.2 13.1 35 370-404 59-93 (154)
34 3hnw_A Uncharacterized protein 76.0 9.1 0.00031 35.5 8.2 50 368-417 81-130 (138)
35 3i00_A HIP-I, huntingtin-inter 74.3 7.6 0.00026 35.5 7.0 101 298-401 6-110 (120)
36 2e7s_A RAB guanine nucleotide 74.2 6.7 0.00023 36.7 6.8 12 427-438 119-130 (135)
37 2k48_A Nucleoprotein; viral pr 73.3 14 0.00049 33.4 8.4 57 333-389 34-102 (107)
38 3mq9_A Bone marrow stromal ant 72.6 19 0.00064 37.7 10.6 71 376-449 397-467 (471)
39 3tnu_B Keratin, type II cytosk 71.4 18 0.00063 32.5 8.9 20 367-386 34-53 (129)
40 1gd2_E Transcription factor PA 70.8 7.5 0.00026 32.6 5.7 48 519-566 21-68 (70)
41 2zqm_A Prefoldin beta subunit 70.2 44 0.0015 28.6 10.7 39 529-567 72-110 (117)
42 2ic6_A Nucleocapsid protein; h 67.4 24 0.00081 30.4 8.1 56 334-389 5-72 (78)
43 3hnw_A Uncharacterized protein 66.0 29 0.00099 32.1 9.1 54 338-391 79-132 (138)
44 3tnu_A Keratin, type I cytoske 65.4 23 0.0008 32.0 8.3 19 368-386 37-55 (131)
45 2k48_A Nucleoprotein; viral pr 63.1 6.9 0.00024 35.4 4.2 74 279-353 26-101 (107)
46 2i1j_A Moesin; FERM, coiled-co 62.7 18 0.00062 40.1 8.4 17 610-626 551-567 (575)
47 2ic9_A Nucleocapsid protein; h 62.5 28 0.00097 31.0 7.9 57 334-390 5-73 (96)
48 2v4h_A NF-kappa-B essential mo 61.9 66 0.0023 29.3 10.3 82 468-564 25-106 (110)
49 3mq9_A Bone marrow stromal ant 61.9 1.3E+02 0.0044 31.4 14.2 71 426-513 398-468 (471)
50 2ic6_A Nucleocapsid protein; h 61.4 9.7 0.00033 32.8 4.6 65 378-446 7-73 (78)
51 1fxk_A Prefoldin; archaeal pro 60.0 78 0.0027 26.7 10.4 36 529-564 67-102 (107)
52 2i1j_A Moesin; FERM, coiled-co 56.9 11 0.00039 41.7 5.5 97 374-491 361-457 (575)
53 3tnu_B Keratin, type II cytosk 56.8 1.1E+02 0.0038 27.4 11.9 73 333-405 35-111 (129)
54 4fi5_A Nucleoprotein; structur 56.3 12 0.00041 34.2 4.6 66 378-447 24-91 (113)
55 3azd_A Short alpha-tropomyosin 55.8 4.5 0.00015 30.1 1.4 31 334-364 4-34 (37)
56 3tnu_A Keratin, type I cytoske 55.8 1E+02 0.0035 27.7 10.8 73 333-405 37-113 (131)
57 2ic9_A Nucleocapsid protein; h 55.2 14 0.00046 33.0 4.6 66 377-446 6-73 (96)
58 1sjj_A Actinin; 3-helix bundle 55.1 2.7E+02 0.0091 31.3 26.6 265 108-397 306-599 (863)
59 4fi5_A Nucleoprotein; structur 54.9 47 0.0016 30.4 8.1 56 335-390 23-90 (113)
60 2jee_A YIIU; FTSZ, septum, coi 54.9 43 0.0015 28.9 7.6 59 459-517 19-77 (81)
61 3mq7_A Bone marrow stromal ant 54.0 1.4E+02 0.0046 27.6 11.1 23 339-361 23-45 (121)
62 2v4h_A NF-kappa-B essential mo 49.3 1.4E+02 0.0049 27.1 10.3 52 305-357 27-78 (110)
63 1jcd_A Major outer membrane li 48.3 58 0.002 25.9 6.8 27 368-394 24-50 (52)
64 2v66_B Nuclear distribution pr 47.8 1.6E+02 0.0055 26.7 12.6 102 300-401 1-102 (111)
65 3jsv_C NF-kappa-B essential mo 47.5 1.2E+02 0.004 27.0 9.2 88 469-571 4-91 (94)
66 4gkw_A Spindle assembly abnorm 47.4 1.9E+02 0.0065 27.4 15.5 59 330-388 7-65 (167)
67 3bas_A Myosin heavy chain, str 46.3 1.4E+02 0.0047 25.4 10.3 25 537-561 59-83 (89)
68 3mov_A Lamin-B1; LMNB1, B-type 43.0 59 0.002 28.4 6.7 64 329-402 7-70 (95)
69 4emc_A Monopolin complex subun 42.9 35 0.0012 33.6 5.8 45 314-358 11-65 (190)
70 3efg_A Protein SLYX homolog; x 42.9 52 0.0018 27.8 6.2 48 528-575 15-62 (78)
71 4ev6_A Magnesium transport pro 42.8 2.3E+02 0.0078 28.7 12.1 60 99-180 156-215 (339)
72 3htk_A Structural maintenance 41.2 1.2E+02 0.0042 23.4 8.2 50 336-385 7-56 (60)
73 3mq7_A Bone marrow stromal ant 40.9 78 0.0027 29.2 7.4 72 374-448 23-94 (121)
74 1m1j_B Fibrinogen beta chain; 40.4 2.7E+02 0.0092 30.6 12.8 29 377-405 101-129 (464)
75 2ocy_A RAB guanine nucleotide 39.5 2.6E+02 0.0087 26.6 16.3 18 342-359 14-31 (154)
76 1go4_E MAD1 (mitotic arrest de 39.3 1.2E+02 0.0042 27.0 8.3 59 499-560 23-94 (100)
77 3s4r_A Vimentin; alpha-helix, 37.8 1.4E+02 0.0049 25.7 8.3 28 391-418 17-44 (93)
78 3jsv_C NF-kappa-B essential mo 36.9 1.1E+02 0.0038 27.2 7.4 78 305-383 5-89 (94)
79 3qh9_A Liprin-beta-2; coiled-c 36.8 1.2E+02 0.0043 26.2 7.6 33 334-366 26-58 (81)
80 2lw1_A ABC transporter ATP-bin 36.7 1.1E+02 0.0037 25.9 7.3 58 335-393 23-80 (89)
81 1t2k_D Cyclic-AMP-dependent tr 36.7 1.3E+02 0.0045 23.7 7.3 44 519-562 14-57 (61)
82 1v9d_A Diaphanous protein homo 36.4 2E+02 0.0069 29.3 10.6 108 59-182 176-283 (340)
83 3cve_A Homer protein homolog 1 34.5 1.6E+02 0.0054 24.9 7.7 35 325-360 6-40 (72)
84 2oqq_A Transcription factor HY 34.4 1E+02 0.0035 23.8 5.9 40 527-573 3-42 (42)
85 1m1j_B Fibrinogen beta chain; 33.5 2.4E+02 0.0083 30.9 11.1 23 370-392 169-191 (464)
86 4emc_A Monopolin complex subun 33.5 1.1E+02 0.0036 30.2 7.5 46 478-523 10-55 (190)
87 3t98_B Nucleoporin NUP58/NUP45 33.1 1.7E+02 0.0058 25.6 8.0 70 499-568 16-85 (93)
88 3i00_A HIP-I, huntingtin-inter 32.6 1.6E+02 0.0056 26.7 8.1 19 473-491 91-109 (120)
89 4abm_A Charged multivesicular 32.5 2.3E+02 0.0078 23.9 9.9 33 528-560 46-78 (79)
90 2e7s_A RAB guanine nucleotide 31.8 51 0.0017 30.9 4.8 38 368-405 45-82 (135)
91 3azd_A Short alpha-tropomyosin 31.7 14 0.00049 27.4 0.9 31 369-399 4-34 (37)
92 3a7o_A Autophagy protein 16; c 31.6 2.3E+02 0.0078 24.2 8.2 30 546-575 44-73 (75)
93 1lwu_C Fibrinogen gamma chain; 30.8 86 0.0029 32.8 6.8 50 340-389 4-53 (323)
94 1x79_B RAB GTPase binding effe 30.4 3.1E+02 0.011 24.9 9.9 72 493-571 36-107 (112)
95 1deq_A Fibrinogen (alpha chain 30.3 4.6E+02 0.016 28.4 12.2 55 461-515 135-189 (390)
96 1l8d_A DNA double-strand break 30.0 2.6E+02 0.0088 23.8 10.9 22 499-520 21-42 (112)
97 3swy_A Cyclic nucleotide-gated 30.0 1.5E+02 0.0051 23.1 6.4 44 338-384 2-45 (46)
98 2jee_A YIIU; FTSZ, septum, coi 29.6 2.7E+02 0.0094 24.0 10.0 63 337-399 16-78 (81)
99 4dvz_A Cytotoxicity-associated 27.8 6.5E+02 0.022 27.7 15.0 71 228-298 357-440 (569)
100 1deq_A Fibrinogen (alpha chain 27.4 5.3E+02 0.018 27.9 12.1 51 521-572 107-158 (390)
101 1t2k_D Cyclic-AMP-dependent tr 26.7 64 0.0022 25.5 3.9 35 483-517 24-58 (61)
102 2zqm_A Prefoldin beta subunit 26.5 2.9E+02 0.01 23.4 9.2 21 338-358 74-94 (117)
103 3ghg_A Fibrinogen alpha chain; 26.2 4.1E+02 0.014 29.9 11.3 21 224-244 56-76 (562)
104 3ghg_A Fibrinogen alpha chain; 25.8 4.5E+02 0.015 29.7 11.5 27 534-560 131-157 (562)
105 4dnd_A Syntaxin-10, SYN10; str 25.5 3.4E+02 0.012 24.7 9.1 63 407-480 63-125 (130)
106 4dvy_P Cytotoxicity-associated 25.5 8.1E+02 0.028 28.1 14.6 73 228-300 617-702 (876)
107 1dh3_A Transcription factor CR 25.5 1.6E+02 0.0053 23.2 5.9 40 518-564 13-52 (55)
108 1gl2_D Syntaxin 8, vesicle tra 25.4 2E+02 0.007 22.6 6.7 55 348-402 9-63 (65)
109 1wt6_A Myotonin-protein kinase 25.3 1.9E+02 0.0066 25.0 6.8 34 475-515 39-72 (81)
110 3htk_B Structural maintenance 25.0 2.8E+02 0.0095 22.6 8.7 65 341-405 4-68 (73)
111 1jnm_A Proto-oncogene C-JUN; B 25.0 1.9E+02 0.0064 22.9 6.4 44 518-561 13-56 (62)
112 3nmd_A CGMP dependent protein 24.9 2.1E+02 0.0073 24.2 6.9 43 345-387 23-65 (72)
113 4etp_A Kinesin-like protein KA 24.8 1E+02 0.0035 32.6 6.3 9 455-463 122-130 (403)
114 2eqb_B RAB guanine nucleotide 24.8 3.7E+02 0.013 23.9 11.6 18 465-482 24-41 (97)
115 1ux5_A BNI1 protein; structura 24.8 2.1E+02 0.0073 29.9 8.6 106 63-182 261-368 (411)
116 1fxk_A Prefoldin; archaeal pro 24.6 3.1E+02 0.011 22.9 8.7 21 306-326 19-39 (107)
117 3cvf_A Homer-3, homer protein 24.2 2.1E+02 0.0071 24.6 6.8 61 320-381 7-74 (79)
118 2akf_A Coronin-1A; coiled coil 23.9 64 0.0022 23.4 3.0 18 541-558 13-30 (32)
119 3ol1_A Vimentin; structural ge 23.8 3.9E+02 0.013 23.8 12.2 79 333-418 19-104 (119)
120 1t6f_A Geminin; coiled-coil, c 23.5 74 0.0025 24.0 3.4 26 544-569 10-35 (37)
121 4h22_A Leucine-rich repeat fli 22.6 2.4E+02 0.0083 25.4 7.2 46 373-418 27-72 (103)
122 2nps_D Syntaxin-6; vesicle fus 21.6 2.4E+02 0.0082 23.4 6.7 57 350-406 21-77 (82)
123 1u5p_A Spectrin alpha chain, b 21.5 4.6E+02 0.016 23.8 16.1 63 332-394 140-213 (216)
124 3ljm_A Coil Ser L9C; de novo d 21.2 85 0.0029 22.4 3.2 23 484-520 4-26 (31)
125 3efg_A Protein SLYX homolog; x 20.8 2.6E+02 0.0089 23.5 6.7 30 540-569 34-63 (78)
126 4dk0_A Putative MACA; alpha-ha 20.5 3.3E+02 0.011 27.0 8.7 13 572-584 153-165 (369)
127 4dk0_A Putative MACA; alpha-ha 20.4 3.6E+02 0.012 26.7 8.9 26 341-366 70-95 (369)
128 1hci_A Alpha-actinin 2; triple 20.4 7E+02 0.024 25.5 31.8 126 110-247 69-201 (476)
129 1uix_A RHO-associated kinase; 20.3 3.9E+02 0.013 22.5 9.7 64 339-402 2-65 (71)
130 3swf_A CGMP-gated cation chann 20.2 2.7E+02 0.0091 23.8 6.6 45 338-385 4-48 (74)
131 1m1j_C Fibrinogen gamma chain; 20.1 4.7E+02 0.016 28.1 10.2 12 342-353 85-96 (409)
132 1x8y_A Lamin A/C; structural p 20.0 3.7E+02 0.013 22.7 7.6 59 334-402 3-61 (86)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.91 E-value=3.9e-25 Score=206.80 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHH
Q 006170 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (658)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (658)
|+|+|++|++++.+|++|+.+|..||..++++++|++|.+++|++|+..+++|++.||.||++++ .+|+++++
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr 73 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR 73 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 006170 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (658)
Q Consensus 454 qQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKea 532 (658)
+|++++|+++|++ ++|.||++|++.+|+||. +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus 74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999 9999999999999999999999999999996554
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.85 E-value=1e-20 Score=178.61 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=116.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHH
Q 006170 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (658)
||+.||.|||++ ++++++ +|++++| +| ++|+|||+|++.+|+||. +|+++|+
T Consensus 1 r~~~lE~qlkea----------ae~ad~----KyeEvaR----~E---~dLEraEERae~aE~k~~-------eLEeeL~ 52 (155)
T 2efr_A 1 RMKQLEDKVEEL----------LSKNYH----LENEVAR----LK---KLLERAEERAELSEGKSA-------ELEEELK 52 (155)
T ss_dssp CHHHHHHHHHHH----------HHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHhHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 588999999985 689999 9999999 77 999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 506 FMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 506 ~l~s~lksLE~sl~kA~q~ke~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
.+++++||||++..+|+++++.| +|++++|++|++|.|++|++++|+|++.|.+.+.+|+.+.++||++
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~t 131 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQL 131 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999965
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.91 E-value=1.9e-05 Score=73.05 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~L 416 (658)
..+...+..+...+.....++..+...+...+.++..+..++..+...+.+.+.++.....++..+...-.++...+..+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 51 KATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555555555555555555555554444444444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.73 E-value=9.9e-05 Score=68.21 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk 414 (658)
.+..++..++.++.....++......+......+..+...+..+...+...+.....+..++..+......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333444444444444444444444444444444444433333333333
No 5
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=98.49 E-value=1.7e-07 Score=74.48 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
++-+||+||||+|+||+++||||++.+++.|++|+.+++++|++-
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999864
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.44 E-value=2.1e-07 Score=109.29 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 006170 112 VERLLDTI 119 (658)
Q Consensus 112 le~~~~~l 119 (658)
|..+|++|
T Consensus 666 l~~L~~~l 673 (1184)
T 1i84_S 666 LTKLMTTL 673 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.43 E-value=5.1e-06 Score=78.83 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 006170 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (658)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~ 421 (658)
++.+||.||+++ ...|.-+. .+++. ++.++.|||+|+..|++||..|...-.-....+|.|+.+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Ky----eEvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLE----NEVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 356788888877 33333333 24444 99999999999999999999988877777777777766655
Q ss_pred CcchhhhhHHHHHHHHHHHHHH
Q 006170 422 SNTKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 422 ~deEK~~~LE~QLKEa~~QLqh 443 (658)
..++|.+..|.|++.+..+|..
T Consensus 67 kasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555433333
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.34 E-value=3.1e-07 Score=107.96 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHh
Q 006170 540 MEMVMQLATQRELIQKQVYSLTSE 563 (658)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~kee 563 (658)
+.-...|..+++.|..+|..+..-
T Consensus 1143 e~q~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1143 EKQKRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333445555666666655554444
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=98.26 E-value=4.7e-06 Score=73.52 Aligned_cols=52 Identities=8% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (658)
+.|+.+|++|++.+|++|+.++.+|..|+.+++.. +++|++|+|||++|+++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999999999875 67999999999999874
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.11 E-value=1.2e-05 Score=68.07 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdE 408 (658)
.+.+|+..+..+.+.+..++..+..++... +++|.+|+++|+.|+++++++++|+..|..||..+++++++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~ 80 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999888888664 77999999999999999999999999999999999987653
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=98.04 E-value=1.5e-05 Score=69.96 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (658)
+.|+.+|++|++.+|++++.++.+|..++.+++.. +++|++|+|||++|+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 68999999999999999999999999999888774 77999999999999874
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.66 E-value=0.0011 Score=62.13 Aligned_cols=141 Identities=24% Similarity=0.261 Sum_probs=97.2
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006170 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (658)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (658)
|.-|++.++-+|.-+.-|=.....||..+.......+....-|+.. -..--+|+..||.+|++.......|
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeea----- 71 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDA----- 71 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3467888888888888887777788877776666555555555443 1122346666666666655555444
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHH
Q 006170 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (658)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa 437 (658)
........|++..++.++.+|+.|+..++++|..|...-.-....++.|+-.......|-+..|.+++..
T Consensus 72 --drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 72 --DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999999998888899999888776677777777777654
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.47 E-value=0.0011 Score=58.44 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELe 410 (658)
...+|++.|-.+.+.+......+..++ ...+.+|++|+++|+.++++++++++++..|..++....+...+.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667766666666666555544444 3358899999999999999999999999999999999999999998
Q ss_pred HHhhhhhc
Q 006170 411 EEINFLKG 418 (658)
Q Consensus 411 relk~Les 418 (658)
.+...|--
T Consensus 86 ~ev~~L~R 93 (101)
T 3u1c_A 86 SEVASLNR 93 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.44 E-value=0.019 Score=74.46 Aligned_cols=182 Identities=12% Similarity=0.137 Sum_probs=123.6
Q ss_pred HHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHH
Q 006170 356 RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (658)
Q Consensus 356 QL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLK 435 (658)
.+..--.|+.++.++|+.|+..+..++-++..+...++....+...-++.+++-+.... ..+.++.
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~--------------~~~~~~~ 1986 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR--------------ELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 34455566777788888888888888888887776666655555544444333222211 1111121
Q ss_pred HHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHH--HHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHH
Q 006170 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI--EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (658)
Q Consensus 436 Ea~~QLqhA~asaEas~eqQ~mkyseisdme~vI--EdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lks 513 (658)
+ |...+.+..++.++ |+..+. +=++.++..||.+++.++.+.. +...+|+.+..++..
T Consensus 1987 ~---~~~ei~~~k~~~e~----------dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1987 V---RNKEIAVQKVKAYA----------DLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIAT 2046 (3245)
T ss_dssp H---HHHHHHHHHHHHHH----------CC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHH----------HHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 1 11111111111111 111111 5667788888888888888888 889999999999999
Q ss_pred HHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 514 LESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 514 LE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (658)
|+...+++..+|..- ++....|-.-|++++..|..|+.|=..++..++.+++.|...+
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 999999999888876 6667778899999999999999999999999999888876654
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.02 E-value=0.0059 Score=53.55 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 006170 339 MKEKVKSLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELer 411 (658)
..+|++.|-.+.+.+......+..+ .+..+.+|.+++++|+.++.++++++.++..+..++....+...+.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444333 344588999999999999999999999999999999999999999999
Q ss_pred HhhhhhcC
Q 006170 412 EINFLKGN 419 (658)
Q Consensus 412 elk~Lesr 419 (658)
++..|--|
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.68 E-value=0.11 Score=51.45 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=87.1
Q ss_pred hhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-
Q 006170 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (658)
Q Consensus 288 gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (658)
-.||.+-..+.....+=..+...+......+......+..+. .++..+...++.+|.+++....++...+..+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666656665555555566666666666555555555443 345555555566666655555555544444432
Q ss_pred --------hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHH
Q 006170 367 --------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (658)
Q Consensus 367 --------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (658)
...++..+.++|..+++++.....+.+.....+..+...-.++...+..++.. -+..+..++.++....
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 25577777788888888888877777777777777777777777666666554 2344455555554443
No 17
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=96.43 E-value=0.0016 Score=63.02 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 529 AKEVNHRTK-------LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 529 lKeae~Rak-------~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
+|.+..|++ ++++.|++|++++|+|++.+..+|++|+.+.++||.+
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999 9999999999999999999999999999999999976
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.16 E-value=0.017 Score=48.86 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=49.1
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 006170 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (658)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (658)
+..|++.++.+.-.+.-|=..+..+|+.+. ....++ ++|+.+|++|++.||++|+.++++|..|..+|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e-------~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAE-------ERSKQL----EDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665544444444444443333 222222 688999999999999999999999999999988
Q ss_pred hh
Q 006170 366 TS 367 (658)
Q Consensus 366 es 367 (658)
..
T Consensus 73 ea 74 (81)
T 1ic2_A 73 LA 74 (81)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.11 E-value=0.23 Score=64.69 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH----HHH
Q 006170 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES----LKE 383 (658)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel----LKE 383 (658)
..|-+...++...-..=|+||.++ .+.|..|++++...+.+|.+.......+-.+......++..-....+. +..
T Consensus 1909 ~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1909 NEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555556777888887 788888888888887777776655433322222111111111111111 112
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHH---HHhhhHH
Q 006170 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE---QQSMLYS 460 (658)
Q Consensus 384 el~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e---qQ~mkys 460 (658)
+...+..+...|+..+.++.=+ .--.+++..+|.+|..++.+|+.+++...+-++ +....|+
T Consensus 1988 ~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 1988 RNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333333333222 011234555666666665555544433332222 1111232
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHH
Q 006170 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (658)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksL 514 (658)
+... =.+.|+.+++..+.|.+.|+.=+.+|+..+--=.+.+..++..++.|
T Consensus 2053 ~~~~---ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TLIR---ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 2211 12333355555666666666666666666655555555555554444
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.11 E-value=0.32 Score=48.23 Aligned_cols=56 Identities=7% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (658)
.|...+..++.++.....++..++. ++.++++.+..++.++.....|......++.
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~-------~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEE-------EKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444 4445555555555555555555555555543
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.85 E-value=0.47 Score=46.47 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=39.2
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 485 ~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
..-.+|.-|=-.|-+|+-..+...+.+.++|..+++|-++..=-=-|+. + -..|..+++||.+++.-++.+.
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~------E--Ke~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD------E--KESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHCCC--------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555667788888888999999999999988877654433433 2 2255677778888887777776
Q ss_pred hHH
Q 006170 565 KLL 567 (658)
Q Consensus 565 K~L 567 (658)
..+
T Consensus 178 ~v~ 180 (189)
T 2v71_A 178 AVR 180 (189)
T ss_dssp ---
T ss_pred HHH
Confidence 553
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.13 E-value=1.4 Score=42.55 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=42.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 006170 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (658)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~R 482 (658)
-++|+..||+||.|++..|..-.-.+.-...+|...--.++..+..+-||++++...+.-
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~ 63 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988887766666666677766667888888888888886654443
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.68 E-value=4.2 Score=39.86 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRAE 393 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa~ 393 (658)
.+..++..++..|+++.+.-..-.+.+|. ++...+.+..++.-|+.++.....|+.
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666554443333322 233344444444444444444443333
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.96 E-value=2.1 Score=50.93 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=35.7
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHH
Q 006170 363 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (658)
Q Consensus 363 klEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (658)
.++..+.+....+..+..|++++...+...+.+....+.+.+.++++...+. +|+..|++.....+.|+
T Consensus 971 ~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----------~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----------QLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555555555555555555555555543322 45555555555544333
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.85 E-value=2 Score=38.98 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=72.9
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHH
Q 006170 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTK 537 (658)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~Rak 537 (658)
+++.+..=+..|+.++.+.+.+-.-+|.+..-|...-..|...|..-+.++...|....+...++... ++++..|-+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677777777777777777775555555666666666666666666666665555543 777777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 538 LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 538 ~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
-.++....|..+..+|++++..+++...-+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888877777665443
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.19 E-value=2.5 Score=38.29 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELere 412 (658)
..-..|..+...|..+......||+.-...+..++.....|..+-..|+..+...++|+..-+..+..|+..-..+..+
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777777777777777666666666666666666666666666666555555444444444433333333
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.04 E-value=4 Score=39.39 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=80.1
Q ss_pred cccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHH
Q 006170 298 NGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQ 370 (658)
Q Consensus 298 ~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~E 370 (658)
|..-+.|+|--.||+..-..+. +--+.-+.-++.|++++..|+..-+..+-++....+.++.= .+.
T Consensus 19 n~kLk~EsE~~~rlkK~~tEl~-------k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 19 NDLLRTESDTAVRLRKSHTEMS-------KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544433332 22222356788999999999998888888887777777652 557
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 006170 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (658)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~L 416 (658)
+++|+.+|..|.+++.+.-.|...+......|.+--..++.+...+
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999888888877776666654433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.39 E-value=1.4 Score=47.19 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa----aLerrIelLKEel~rAEsRa~tAesKle~LSeTNdEL 409 (658)
.++..+..++..+++++...+..++....++++...... .+.+..+.+++.+.+.++|.+..+.++....+...+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 355556666666666666666666666666555433222 5555667788888888888888888888888888888
Q ss_pred HHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHH
Q 006170 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (658)
Q Consensus 410 erelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (658)
++++..++. ++..+|+++++.+.+++.
T Consensus 536 ~~~~~~~~~-------~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 536 QKETEDLEQ-------ENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHh-------hhHHHHHHHhhhhhHHHH
Confidence 888877666 367777777776644433
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.84 E-value=7.3 Score=41.63 Aligned_cols=76 Identities=8% Similarity=0.095 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~t---lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
.+++++..+..+...++..+.+..+..... .+.++....-+++-...-...+.++..++...+.+.+.+.++++.+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 566666666666665555554444333222 3334445555555555555566666666777777777776666643
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.49 E-value=5.7 Score=47.25 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=13.2
Q ss_pred ccccchhhh---hhHHHHHHHHH
Q 006170 52 DLAYSSEKL---VNLHVLLMYLL 71 (658)
Q Consensus 52 ~la~~SEKl---~NL~~l~M~l~ 71 (658)
=+-|+-||| +|-|+|.++-.
T Consensus 453 cINy~NEkLQq~F~~~~f~~Eqe 475 (1080)
T 2dfs_A 453 CINYANEKLQQQFNMHVFKLEQE 475 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHhhHHHHH
Confidence 345777887 56677776544
No 31
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=87.63 E-value=0.45 Score=40.84 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHhhc
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKLQYS 574 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~~ 574 (658)
.+++||+|++.++..|++|+.+.++||.+
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999965
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.02 E-value=9.7 Score=32.63 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 006170 392 AESAEEKVTQLTDTNLELSEEINFLKGN 419 (658)
Q Consensus 392 a~tAesKle~LSeTNdELerelk~Lesr 419 (658)
+..|+.+|..|.....+|+..++.|..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888777554
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.63 E-value=28 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 006170 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LSe 404 (658)
++..|...+..=...-..||.+....+..++.||.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344445555555555555543
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.00 E-value=9.1 Score=35.46 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Le 417 (658)
+.++..+...|.+||.++..+..++..+..+++.+.+-+.+|.++..-|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777777777777776666666666666555443
No 35
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.27 E-value=7.6 Score=35.46 Aligned_cols=101 Identities=28% Similarity=0.339 Sum_probs=49.7
Q ss_pred cccccchhH-HHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH
Q 006170 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (658)
Q Consensus 298 ~as~~REse-l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (658)
+|+..-+.| +..-|+.-++.|.+ .++.+....-.-+..|...|..||-+|++..-+.+.|....+....++..+.+
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk~---ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLKA---QLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 55566666655553 44444443457888999999999999999998888887776665555555433
Q ss_pred HHHH---HHHHHHhhhhhHHHHHHHHHH
Q 006170 377 FIES---LKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 377 rIel---LKEel~rAEsRa~tAesKle~ 401 (658)
.... +...+..+|.|++.++.+...
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSK 110 (120)
T ss_dssp TCC-------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 233345566666666555443
No 36
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.19 E-value=6.7 Score=36.70 Aligned_cols=12 Identities=33% Similarity=0.529 Sum_probs=0.4
Q ss_pred hhhHHHHHHHHH
Q 006170 427 VGILENQLRDLE 438 (658)
Q Consensus 427 ~~~LE~QLKEa~ 438 (658)
++.+..||.+.+
T Consensus 119 l~~lq~QL~~LK 130 (135)
T 2e7s_A 119 LDTLTLQLKNLK 130 (135)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=73.31 E-value=14 Score=33.36 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAE 389 (658)
-+.+..|++-+...|.||-.+.-.|.+|....|.- .+.|++++..|.+||..+..+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988777652 6689999999999998886553
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.60 E-value=19 Score=37.67 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhH
Q 006170 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (658)
Q Consensus 376 rrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (658)
++..+|..+|.+++.....++.+-.-...|..-|..-|..-.+++ ..|+..||+++++.+.+|+.+.+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655555566655555444333332 25889999999999888888776554
No 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.44 E-value=18 Score=32.50 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.0
Q ss_pred hHHHHHhHHHHHHHHHHHHH
Q 006170 367 SQEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 367 sE~EVaaLerrIelLKEel~ 386 (658)
+..++..|.|.|+.|.-++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655553
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.83 E-value=7.5 Score=32.56 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhH
Q 006170 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (658)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~ 566 (658)
-.+-++|..|+++++.+..-.+.....|..|.+.|..+|..+..+++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999998888765
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.16 E-value=44 Score=28.60 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
.+.++.|.++++.-+..|....+.++.++..++.+...+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999888888888888888888877766553
No 42
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=67.45 E-value=24 Score=30.42 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAE 389 (658)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999888777552 6689999999999998876543
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.95 E-value=29 Score=32.12 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhh
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (658)
.|...+..+++++-.+...|..++.+++....++..+.+.|..|..++-+.|+.
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555566666666666666666666666666666665543
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.40 E-value=23 Score=31.97 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=8.7
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 006170 368 QEQLNEMDNFIESLKESLY 386 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~ 386 (658)
..++..+.|.|+.|.-++.
T Consensus 37 k~Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQ 55 (131)
T ss_dssp ----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666555543
No 45
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.11 E-value=6.9 Score=35.37 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.4
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 006170 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (658)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~lekl~~s~esEv~sLqkKvksLE~qLdes 353 (658)
+.||-+-+.+-++-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|..|+.|+..|..++.+.
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556555555554444444567999999888864 233333443 5788999999988888887654
No 46
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=62.73 E-value=18 Score=40.10 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=12.6
Q ss_pred hhhhhhhhhhccCCcee
Q 006170 610 EDAVSLMKSVQAGPTCI 626 (658)
Q Consensus 610 ~~~~~~~~~~~~~~~~~ 626 (658)
.|=..++|-+|.|.|.-
T Consensus 551 rdKykTLr~ir~Gntk~ 567 (575)
T 2i1j_A 551 RDKYKTLREIRKGNTKR 567 (575)
T ss_dssp CCHHHHHHHHTCSCHHH
T ss_pred chHHHHHHHHhcCCchH
Confidence 34457899999998853
No 47
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=62.45 E-value=28 Score=30.99 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (658)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999888777652 66899999999999988866543
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.85 E-value=66 Score=29.26 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=49.5
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 006170 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (658)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~ 547 (658)
.|.+|+.+|.-||+-...--..|- +|.+|+.-.+..+...+.--.++.--+.-+-.|=..|- +++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~id-------elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE--------kl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH--------HHH
Confidence 366777777777766666666677 77777777666555444444455444555544444443 445
Q ss_pred HHHHHHHHHHhHHHHhh
Q 006170 548 TQRELIQKQVYSLTSEN 564 (658)
Q Consensus 548 ~ErdrLedQL~s~keen 564 (658)
.+.++|..|+..+...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666666655554
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.85 E-value=1.3e+02 Score=31.39 Aligned_cols=71 Identities=14% Similarity=0.282 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHH
Q 006170 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (658)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~ 505 (658)
....|.+||-+++.-+.++++-|..... +|- ++.+-|-.|++.++.|.+..|..+. +||.+|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANH-------TVM---ALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcch-------hHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4677888888888777777766555443 121 3334444777778877666666666 6666666
Q ss_pred HHHhhHHH
Q 006170 506 FMRDKIKI 513 (658)
Q Consensus 506 ~l~s~lks 513 (658)
..+..++.
T Consensus 461 ~~~~~~~~ 468 (471)
T 3mq9_A 461 DASAEVER 468 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555553
No 50
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=61.39 E-value=9.7 Score=32.79 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
|+.|.+++..-|..+.+|..|++.++++..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~----~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876433222 23456653 3578899999999888877766
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.99 E-value=78 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
...++.|.++++.-+..|....+.++.++..++...
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888899999888888888888888877766543
No 52
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.95 E-value=11 Score=41.68 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHH
Q 006170 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (658)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (658)
.+.++.+|.++..+||.-+..-+.+-..+.+++..|.. .+....+--..|+.++.++. ..+..
T Consensus 361 ~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~-------~~~~~~~e~~~l~~~~~~~~---~~~~~------- 423 (575)
T 2i1j_A 361 AQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE-------TKNMEAAERQKLEDEIRAKQ---EEVSR------- 423 (575)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH---HHHHH-------
Confidence 34445666666666665555444444333333333332 22222222345566666554 11111
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 006170 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 454 qQ~mkyseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~ 491 (658)
+-.+..+++.-.+.|+.++..|....+.+..+..
T Consensus 424 ----~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 424 ----IQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ----------------------CHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444455555666666666655444444443
No 53
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.81 E-value=1.1e+02 Score=27.40 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
.+|+..+...++.|+-+++....+-..-...+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888876655433333333222 44667777777777777776655555444444444333
No 54
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=56.28 E-value=12 Score=34.15 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhh
Q 006170 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (658)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LSeTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (658)
|++|.+++..-|..+.+|..|+..++++..---.+ ...+..|. .=+..|+..|.+.+-||.-+++.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~----~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDRE----GVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998876433222 34566663 35789999999999888877763
No 55
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=55.83 E-value=4.5 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (658)
+++.++.+|++.|+.+++.+++++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788888888888888888777776654
No 56
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.83 E-value=1e+02 Score=27.69 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
.+|+..+...++.|+-+++....+-..-...+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887765544433222222222 34666777777777777766655555444444444433
No 57
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=55.19 E-value=14 Score=33.00 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHh
Q 006170 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (658)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LSeTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (658)
-|+.|.+++..-|..+..|..|+..++++..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~----~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999998876433222 34566663 3578899999999888877776
No 58
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=55.09 E-value=2.7e+02 Score=31.31 Aligned_cols=265 Identities=8% Similarity=0.074 Sum_probs=127.9
Q ss_pred hHHhHHHHHHHHHhhhhccccee------ccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006170 108 ELREVERLLDTIHVEIVNVHHKI------SSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (658)
Q Consensus 108 Ev~ele~~~~~lq~~I~~~~~~~------~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (658)
|+..++..+.+|+..+....... +.+..+...+-.+ +....+.+..|.....+...+-....+|++....+
T Consensus 306 e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~ 382 (863)
T 1sjj_A 306 EKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGL---EQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIH 382 (863)
T ss_dssp HHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHH---HHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776665433321 1222223322222 33333333433332222222223457788887777
Q ss_pred ccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHH
Q 006170 182 IHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (658)
Q Consensus 182 ~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~ 261 (658)
..|-.+....+.. ..+++ ..+.++..+..-...++..|+. .+..+.......++|...=|+-. ..+..-
T Consensus 383 ~~Wl~~~e~~l~~-~~~g~----~dl~~v~~ll~kh~~f~~el~~---~~~~v~~l~~~~~~L~~~~~~~~---~~I~~~ 451 (863)
T 1sjj_A 383 ESWTDGKEAMLQQ-KDYET----ATLSEIKALLKKHEAFESDLAA---HQDRVEQIAAIAQELNELDYYDS---PSVNAR 451 (863)
T ss_dssp HHHHHHHHHHHHS-CTTTS----SCHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTCCTTH---HHHHHH
T ss_pred HHHHHHHHHHhhc-ccccC----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccH---HHHHHH
Confidence 7776655544443 22322 1233444444445666666654 34555555666666664333322 334444
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhh---HH--hhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHH
Q 006170 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQ---IV--QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (658)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq---~~--qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (658)
...+..||-.=-.+++-=+..+...+..++ .. ||.-.+ .++.+=+...++.|...+. ....+++
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a-----~~~~~Wl~~~e~~l~~~~~------g~dl~~v 520 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRA-----APFNNWMEGAMEDLQDTFI------VHTIEEI 520 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHCCCC------CSSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchHh------hccHHHH
Confidence 444555553322222222222222222222 11 333222 2344555555555543221 1236779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhh---------------HHHHHhHHHHHHHHHHHHHhhhhhHHHHHH
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNAN---ACFQTS---------------QEQLNEMDNFIESLKESLYGAESRAESAEE 397 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~---aklEes---------------E~EVaaLerrIelLKEel~rAEsRa~tAes 397 (658)
..|.+|.+.++.++......+.... ..+... ...+..+..+-+.|.+-+..=..|++.+..
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765543322 122110 113456666666666666666666666653
No 59
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=54.92 E-value=47 Score=30.37 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHHHHHhhhh
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (658)
.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999888776552 66889999999999988765543
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.88 E-value=43 Score=28.93 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=44.8
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 006170 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (658)
Q Consensus 459 yseisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~s 517 (658)
.++|.-+.--|++||.|-......++.+-+....|...|..|.+|......|+.+|=.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777778888888776666666666666677888889999999998888877433
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.04 E-value=1.4e+02 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 006170 339 MKEKVKSLEEQLKESEIRLQNAN 361 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ 361 (658)
.+.....|+.+|..+++-|..+.
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777766665554
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=49.32 E-value=1.4e+02 Score=27.13 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=35.8
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 357 (658)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL 357 (658)
.+|+.+|..+++.|..+...+++|... ..-...-.+.|.-|+.|.+-|..--
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988888888764 2222222246677777777766553
No 63
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.32 E-value=58 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
.++|.++..-|+-.|++..||=.|+.+
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 335566666677888888888888764
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=47.83 E-value=1.6e+02 Score=26.65 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHH
Q 006170 300 SLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 379 (658)
Q Consensus 300 s~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIe 379 (658)
+.+|+.+|++|.....-..+.-..-++.......+...+||+-+..|=..-+.+...+....-..+..+-.-.....-++
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH
Q 006170 380 SLKESLYGAESRAESAEEKVTQ 401 (658)
Q Consensus 380 lLKEel~rAEsRa~tAesKle~ 401 (658)
+++.++..|=+|-.--++.+.+
T Consensus 81 D~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 81 DFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=47.54 E-value=1.2e+02 Score=27.02 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=51.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 006170 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (658)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ 548 (658)
|++|+..+.-||+-+-+-...|- +|.+++.-.+..+...+.--.++.--++-|-.|=..|- +++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id-------~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE--------kl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh
Confidence 44556666656555555455555 66666666666666555555556555666655555553 4566
Q ss_pred HHHHHHHHHhHHHHhhhHHHHHH
Q 006170 549 QRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 549 ErdrLedQL~s~keenK~L~ekL 571 (658)
+.++|..++..+...|..|+..+
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp TTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888777766544
No 66
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=47.36 E-value=1.9e+02 Score=27.37 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhh
Q 006170 330 STKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (658)
Q Consensus 330 ~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (658)
+.++..+..|+.-+.++-+++++.++.|.-+..-+.+-+..|-.|..|...-.-++.+-
T Consensus 7 E~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 7 EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHH
Confidence 33678889999999999999999999988887777777777777777777766666554
No 67
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.27 E-value=1.4e+02 Score=25.45 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 537 KLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 537 k~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
.-+++.+.+|......|+.+|.-+.
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666665543
No 68
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=43.00 E-value=59 Score=28.40 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=30.5
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 329 ~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
|++++..+..|+.+..+||+++.+++.+.... ++.++..|..|+.++.++....+.-...+..|
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e----------~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAKE----------KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888765433 34455555555555554444333333333333
No 69
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.91 E-value=35 Score=33.60 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHHHHhhhhHHHHHhhcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006170 314 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (658)
Q Consensus 314 ~~eqL~~k~~~lekl~~s----------~esEv~sLqkKvksLE~qLdes~eQL~ 358 (658)
..+||+..+..+++|... ++.|+..|++++.+++++.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345555555555544331 345555555555555555555444443
No 70
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.89 E-value=52 Score=27.83 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+++....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888888888888888888888888877544
No 71
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=42.78 E-value=2.3e+02 Score=28.66 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 006170 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (658)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (658)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888777766654332 122345667777777777777
Q ss_pred hh
Q 006170 179 SY 180 (658)
Q Consensus 179 ~~ 180 (658)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 72
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.19 E-value=1.2e+02 Score=23.41 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006170 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (658)
+..++.++...+..++.....+..++.++....+.+......|..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554555555555555554443
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.90 E-value=78 Score=29.18 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhh
Q 006170 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (658)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (658)
-.+...+|+..+-+|+.-+..++..-.--..|..-|..-|+..+.++ -.++.-|++.++..+.+|+.|-+-+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555555555555555555444443 2456666666666665665554433
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.38 E-value=2.7e+02 Score=30.58 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 377 FIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
.|+.||..+...+.+..+|......+...
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555555544444444333
No 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.55 E-value=2.6e+02 Score=26.63 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006170 342 KVKSLEEQLKESEIRLQN 359 (658)
Q Consensus 342 KvksLE~qLdes~eQL~~ 359 (658)
+...||+.|-.+...|..
T Consensus 14 ~qs~LeD~L~~~R~el~~ 31 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIAS 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHH
Confidence 444444444444444433
No 76
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.27 E-value=1.2e+02 Score=26.96 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHH----hh---------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKA----AS---------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke----~t---------lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (658)
.|+-|-.-++.+...||..+....-+-+ .| +-.+..+ .+..+.||+.|+++|...+..+
T Consensus 23 ~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~---~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 23 ELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR---LREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555655554221111 11 3344333 3478888888888888777654
No 77
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.83 E-value=1.4e+02 Score=25.72 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 391 RAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 391 Ra~tAesKle~LSeTNdELerelk~Les 418 (658)
|+++=..|.--|++.|..|+.++..+.+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555554444
No 78
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.94 E-value=1.1e+02 Score=27.16 Aligned_cols=78 Identities=24% Similarity=0.243 Sum_probs=48.3
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhhhhhhHHHHHhHHHH
Q 006170 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA-------NACFQTSQEQLNEMDNF 377 (658)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A-------~aklEesE~EVaaLerr 377 (658)
.+|..+|..+++-|..+...+++|.+. ..-.....+.+.-|..|.+-|..--..= ...-+....+++.+.+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 378999999999999999999988875 3333444466777777777776654322 22222234455555555
Q ss_pred HHHHHH
Q 006170 378 IESLKE 383 (658)
Q Consensus 378 IelLKE 383 (658)
+..|+.
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 555544
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.77 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (658)
-|+..|.-||..+|++--.|+-.|..+++.+-.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~ 58 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 578889999999999999999888888755433
No 80
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.72 E-value=1.1e+02 Score=25.87 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHH
Q 006170 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (658)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (658)
|+..|-.++..||.++...+.++.+...-. ..-..++.+..++..++.++..+..|=.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776543211 1235677777777777777777777754
No 81
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.65 E-value=1.3e+02 Score=23.70 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.1
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006170 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (658)
Q Consensus 519 ~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ke 562 (658)
.+.-++|..+..+++.+.+..+.--..|..++..|..++..++.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888888888888888777776653
No 82
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=36.41 E-value=2e+02 Score=29.34 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 006170 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (658)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (658)
|..=||.++..+.....++-.+..+-.+ |++|--.|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~~-----v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELAH-----VEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCTT-----HHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHHh-----HHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 4444788888887777777666644333 555554442 33567888888888888888765422 122344
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006170 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (658)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (658)
.|... |..-+.+++..+.+.+.+...+. ..|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~---~~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNME---TLYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 56532 47888999998888888887775 45777777775
No 83
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=34.53 E-value=1.6e+02 Score=24.93 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=21.5
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006170 325 LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (658)
Q Consensus 325 lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A 360 (658)
.++|... +.+...|.++|+.+|.++..+...=...
T Consensus 6 ~~kLq~~-E~~N~~Le~~v~~le~~Le~s~~~q~~~ 40 (72)
T 3cve_A 6 HMKLQEV-EIRNKDLEGQLSEMEQRLEKSQSEQDAF 40 (72)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 5666677777777777777776543333
No 84
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.37 E-value=1e+02 Score=23.85 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=28.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHhh
Q 006170 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (658)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekLd~ 573 (658)
.|+-+++.|++-.+ .....|+..|+++.-+|.+|-+.++|
T Consensus 3 aYl~eLE~r~k~le-------~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 3 AYLSELENRVKDLE-------NKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 47778888776554 44455677788888899998877764
No 85
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.50 E-value=2.4e+02 Score=30.93 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhH
Q 006170 370 QLNEMDNFIESLKESLYGAESRA 392 (658)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa 392 (658)
.|+.|...++.++.+|.+-++..
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 86
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.49 E-value=1.1e+02 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=27.0
Q ss_pred hhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 006170 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (658)
Q Consensus 478 rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q 523 (658)
.+++|.+.++.=+.-|.-.|.-|+++|......++.|..++..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888878888888888888877777777766655443
No 87
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.06 E-value=1.7e+02 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ 568 (658)
+.++-|..+++.++.+|.-+...+...--|..++-.=-.-.=.+-.-|+..+..||.++-.+|+.|..+-
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888887766543333344555444455556677889999999999999999998753
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.63 E-value=1.6e+02 Score=26.72 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhh
Q 006170 473 KSKVSKAESKTESVEEQCI 491 (658)
Q Consensus 473 k~Kl~rAE~RaE~aEsKc~ 491 (658)
+.++..+|.||...|.+..
T Consensus 91 q~~~~e~E~kAqa~Eerf~ 109 (120)
T 3i00_A 91 QRSLSEIERKAQANEQRYS 109 (120)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566555555554
No 89
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.47 E-value=2.3e+02 Score=23.94 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=30.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006170 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (658)
-|+-+-.|.+..|..+.|+...+..|+.|+.++
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388899999999999999999999999999874
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.81 E-value=51 Score=30.87 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
..++..|...+..=...-..||++....+..++.||.+
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666666666666666654
No 91
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.68 E-value=14 Score=27.37 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006170 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (658)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (658)
+.+.++.++|+-|+.+.+.|+.|+..+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998876554
No 92
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.65 E-value=2.3e+02 Score=24.18 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHhhcC
Q 006170 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (658)
Q Consensus 546 L~~ErdrLedQL~s~keenK~L~ekLd~~~ 575 (658)
=.+-.+||.|+|-++.-+|+.|.++|...+
T Consensus 44 k~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 44 KNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 347789999999999999999999998654
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.80 E-value=86 Score=32.80 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhh
Q 006170 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (658)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAE 389 (658)
++|++.+.+++..++..+..+...+...+..+..++.+|+.|+.+|..-+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444344444455555555555444333
No 94
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=30.43 E-value=3.1e+02 Score=24.87 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=32.0
Q ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Q 006170 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (658)
Q Consensus 493 Lse~N~ELeEEL~~l~s~lksLE~sl~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L~ekL 571 (658)
+.+.|-+=.-++..+..++..-|..|...-+.=. .-..-+.+-+.+|...|+++..+|..+..+|-.|..+.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs-------q~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~ 107 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLS-------QAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKH 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 3344444444555555555555444443322111 11233567788999999999999999999998877654
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.28 E-value=4.6e+02 Score=28.37 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHH
Q 006170 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (658)
Q Consensus 461 eisdme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE 515 (658)
.|+.+..+|+++..|..|-|.-.+..=.-|.+=-.-+++++=.+..|.+-.|.|+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 4555666666666666665555544444455333334444444566655555543
No 96
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.00 E-value=2.6e+02 Score=23.80 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=10.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 006170 499 ELKNKQSFMRDKIKILESSLNR 520 (658)
Q Consensus 499 ELeEEL~~l~s~lksLE~sl~k 520 (658)
+|......++++++.++..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 97
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.97 E-value=1.5e+02 Score=23.15 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (658)
++.+|+..||.-++..+..+..--+.. .+-..-|..||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 467888899988888888877665543 34444566777776654
No 98
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.56 E-value=2.7e+02 Score=23.98 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006170 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (658)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (658)
..+-+.+..|.-++++..++-.......++..+....+.+.|+-|+++...=++|+..-..|.
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555554444444444555556677777777777777777766655553
No 99
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=27.85 E-value=6.5e+02 Score=27.75 Aligned_cols=71 Identities=24% Similarity=0.285 Sum_probs=46.6
Q ss_pred hhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHH-------------HHHHHhccchHHHHhhhhHHHHhhhhHHh
Q 006170 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV-------------WGRFLEAENSAEVLMGISKEMLGRFQIVQ 294 (658)
Q Consensus 228 ldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~-------------~er~~EAENa~EvL~g~skel~gkLq~~q 294 (658)
-||||.|.--..+|+|..-||.+-..-+-.||.-|..- ..|-++|--.+.-|.||=+|+.+||..+-
T Consensus 357 kdlekslrkrehlekev~kkle~~~~nkn~meakaqansqkd~ifalin~ea~kearAtal~kNfsgIrkELsdKleN~N 436 (569)
T 4dvz_A 357 KDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKIS 436 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHhhhccccchHHHHhhhhhhhhHHHHHhhhhhHHhHHHHHHHHhhhh
Confidence 46666666666667777777666555555666544332 23456677778889999999999999888
Q ss_pred hhcc
Q 006170 295 FNLN 298 (658)
Q Consensus 295 f~L~ 298 (658)
.+++
T Consensus 437 nNln 440 (569)
T 4dvz_A 437 KDLK 440 (569)
T ss_dssp HHHH
T ss_pred ccch
Confidence 8885
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.43 E-value=5.3e+02 Score=27.91 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred HhHHHHhhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhhHHHHHHh
Q 006170 521 ANIEKAASAKEVNHRTKLMMEMVM-QLATQRELIQKQVYSLTSENKLLVEKLQ 572 (658)
Q Consensus 521 A~q~ke~tlKeae~Rak~aE~lV~-KL~~ErdrLedQL~s~keenK~L~ekLd 572 (658)
....=.+|..+++.|..++.+.|. |+. .+..|+.-|-.+..+.+-|-...+
T Consensus 107 ndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 107 NDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334457777777777776664 443 666666666666666665555544
No 101
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.69 E-value=64 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=25.1
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHH
Q 006170 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (658)
Q Consensus 483 aE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~s 517 (658)
.+..|.++..|+..|.+|..++..++..+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677778888888888888877777543
No 102
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.54 E-value=2.9e+02 Score=23.36 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQ 358 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~ 358 (658)
.|.++...++..++..+.++.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 103
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.24 E-value=4.1e+02 Score=29.95 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.2
Q ss_pred hhhhhhhHHhhHHHhhhHHHH
Q 006170 224 LARELDLEKKISELNQNEEQL 244 (658)
Q Consensus 224 lA~EldLEKkL~es~~~eeeL 244 (658)
+--|.||-+.|.+.|+..+++
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 334777777787777777777
No 104
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.83 E-value=4.5e+02 Score=29.65 Aligned_cols=27 Identities=7% Similarity=0.058 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006170 534 HRTKLMMEMVMQLATQRELIQKQVYSL 560 (658)
Q Consensus 534 ~Rak~aE~lV~KL~~ErdrLedQL~s~ 560 (658)
.+..+....|..+-.++.|||..|..-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777777777654
No 105
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.55 E-value=3.4e+02 Score=24.69 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred HHHHHHhhhhhcCCCCcchhhhhHHHHHHHHHHHHHHhHhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 006170 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (658)
Q Consensus 407 dELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkyseisdme~vIEdLk~Kl~rAE 480 (658)
.|+..-.+.|++. +..+|-+|.+. +.|+.+++..-.+=+.--.++.+--..|.+++.++...+
T Consensus 63 ~E~~~~~~EL~~~-------l~sie~dLeDL----e~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 63 EELDWTTNELRNG-------LRSIEWDLEDL----EETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555553 67788888775 488888886665211112467777788887777766444
No 106
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=25.47 E-value=8.1e+02 Score=28.09 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=42.9
Q ss_pred hhhHHhhHHHhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HH---------hccc--hHHHHhhhhHHHHhhhhHHh
Q 006170 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR--FL---------EAEN--SAEVLMGISKEMLGRFQIVQ 294 (658)
Q Consensus 228 ldLEKkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er--~~---------EAEN--a~EvL~g~skel~gkLq~~q 294 (658)
-||||.|.--..+|+|..-||..-..-+-.||.-|..-+.+ .| ||.+ ...-|.||-.|+.+||..+-
T Consensus 617 kdlekslrkrehlekev~kkles~~~nkn~meakaqansqkd~ifalin~ea~kear~~a~~~nlkGI~~ElsdKlENiN 696 (876)
T 4dvy_P 617 KDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKIS 696 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHhhhhccccchHHHHhhhhhhhHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 36666666666666666666666555555666544433321 11 2222 34668899889988888887
Q ss_pred hhcccc
Q 006170 295 FNLNGS 300 (658)
Q Consensus 295 f~L~as 300 (658)
.+|+--
T Consensus 697 knLkDf 702 (876)
T 4dvy_P 697 KDLKDF 702 (876)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776443
No 107
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.47 E-value=1.6e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=25.6
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
....-.+|-.|+.+++.+ |.+|..+-..|..++..+...+
T Consensus 13 A~rSR~RKk~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENR-------VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888888777 4556666666666666655443
No 108
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.43 E-value=2e+02 Score=22.64 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 348 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 348 ~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
..|+.....+...+.-.-..-.|+..-+..+..+..+++++..|+..+..++..+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444433444567888889999999999999999999998887654
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.27 E-value=1.9e+02 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhhhhhhhhcccchhhHHHHHHHHHhhHHHHH
Q 006170 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (658)
Q Consensus 475 Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE 515 (658)
..--+++++.-+|.++- +|..|+..++.+++.|.
T Consensus 39 ~ni~~eskL~eae~rn~-------eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 39 DNQNFASQLREAEARNR-------DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33344555555666666 99999999999888764
No 110
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.00 E-value=2.8e+02 Score=22.55 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
.|++.+|.++.+.-.....+-++...+-..+......+-...=.+..|..|..+....+..+...
T Consensus 4 ~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r 68 (73)
T 3htk_B 4 QKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNER 68 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 46667777777666666666666555555666666555555556666666666666666555443
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.96 E-value=1.9e+02 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006170 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (658)
Q Consensus 518 l~kA~q~ke~tlKeae~Rak~aE~lV~KL~~ErdrLedQL~s~k 561 (658)
..+.-++|-.+..+++.+.+..+.-...|..++..|..++..++
T Consensus 13 A~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 13 ASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777777877777777776666666666666666665554
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.90 E-value=2.1e+02 Score=24.21 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 006170 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (658)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (658)
.|+..|..-.++|..-..-.++.+.++...+..|+.|+.++++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344333433333333344444444444555555555443
No 113
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.82 E-value=1e+02 Score=32.64 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=4.6
Q ss_pred HhhhHHHHH
Q 006170 455 QSMLYSAIW 463 (658)
Q Consensus 455 Q~mkyseis 463 (658)
|...|.++.
T Consensus 122 Q~~Vf~~v~ 130 (403)
T 4etp_A 122 NVDVFKEVG 130 (403)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 334565554
No 114
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.77 E-value=3.7e+02 Score=23.89 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 006170 465 METLIEDLKSKVSKAESK 482 (658)
Q Consensus 465 me~vIEdLk~Kl~rAE~R 482 (658)
...=+..|+.++.+...+
T Consensus 24 ~~~e~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 115
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=24.75 E-value=2.1e+02 Score=29.86 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 006170 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (658)
Q Consensus 63 L~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~--~~~~~~f 140 (658)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7777777777766666554332 34556544332 3456889999999999998886422 2221 1334445
Q ss_pred HHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 006170 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (658)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~ 182 (658)
.. .|..-+..++..+...++++..+.. .|.++..+|.
T Consensus 332 ~~--~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LI--KTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 53 2377788888888888887776654 6777777775
No 116
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.58 E-value=3.1e+02 Score=22.92 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=9.1
Q ss_pred HHHHHHHhHHHHHhhhhHHHH
Q 006170 306 ELKSKLGDFIEQLKAKDMVLQ 326 (658)
Q Consensus 306 el~sKL~~~~eqL~~k~~~le 326 (658)
.+..++.....++..-+.+++
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 117
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.19 E-value=2.1e+02 Score=24.57 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhhhhHHHHHhHHHHHHHH
Q 006170 320 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE-------IRLQNANACFQTSQEQLNEMDNFIESL 381 (658)
Q Consensus 320 ~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~-------eQL~~A~aklEesE~EVaaLerrIelL 381 (658)
+++...++|... +.+...|.++|..+|.++..+. ..+..+...++-+--++.++..-+..|
T Consensus 7 e~e~~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 7 EREETQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp ---CTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
No 118
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.85 E-value=64 Score=23.39 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006170 541 EMVMQLATQRELIQKQVY 558 (658)
Q Consensus 541 ~lV~KL~~ErdrLedQL~ 558 (658)
-.|++|++.+|||++-+.
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999999988653
No 119
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.76 E-value=3.9e+02 Score=23.76 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HH---HHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 006170 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeT 405 (658)
+.++..|+.++..+-.+-.....++.++...++.. +. .-.++++-|..|+..++.+--.-.. |..-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~d-------LE~~ 91 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLD-------LERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-------HHHH
Confidence 45666777776665555545555554444444332 22 3336666677777666544332222 3333
Q ss_pred hHHHHHHhhhhhc
Q 006170 406 NLELSEEINFLKG 418 (658)
Q Consensus 406 NdELerelk~Les 418 (658)
..-|.+++.||+.
T Consensus 92 iesL~eEl~FLKk 104 (119)
T 3ol1_A 92 VESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666654
No 120
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.46 E-value=74 Score=23.95 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHH
Q 006170 544 MQLATQRELIQKQVYSLTSENKLLVE 569 (658)
Q Consensus 544 ~KL~~ErdrLedQL~s~keenK~L~e 569 (658)
-||-++++.=..+|.+++++|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 47888888889999999999988753
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.58 E-value=2.4e+02 Score=25.37 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 006170 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (658)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LSeTNdELerelk~Les 418 (658)
++-=.|..||+.+..-|+-.....-.+.+.+.-...+++....|..
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~ 72 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQF 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666655555555544444444444444444444433
No 122
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.55 E-value=2.4e+02 Score=23.41 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 006170 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (658)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LSeTN 406 (658)
|+.....+...+.-.-..-.||..-+..|..+..+++++..|+..+..++..+.+.+
T Consensus 21 Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 21 LELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333345668888899999999999999999999999988776543
No 123
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=21.48 E-value=4.6e+02 Score=23.77 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-----------hHHHHHhHHHHHHHHHHHHHhhhhhHHH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT-----------SQEQLNEMDNFIESLKESLYGAESRAES 394 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe-----------sE~EVaaLerrIelLKEel~rAEsRa~t 394 (658)
.-+.|..|.+|.+.++.++......+......-.. ....+..++.+=..|...+..=..+++.
T Consensus 140 dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~ 213 (216)
T 1u5p_A 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEE 213 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888776655433322 1445555555555555555544444443
No 124
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.17 E-value=85 Score=22.43 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=14.3
Q ss_pred hhhhhhhhhcccchhhHHHHHHHHHhhHHHHHHHHHH
Q 006170 484 ESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (658)
Q Consensus 484 E~aEsKc~~Lse~N~ELeEEL~~l~s~lksLE~sl~k 520 (658)
|..|.||. .+.+++..||.+++.
T Consensus 4 ealekkca--------------alesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCA--------------ALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 56788888 455555555555543
No 125
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.79 E-value=2.6e+02 Score=23.53 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Q 006170 540 MEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (658)
Q Consensus 540 E~lV~KL~~ErdrLedQL~s~keenK~L~e 569 (658)
-+.|.+.+.++++|+.++..+.++.+.+..
T Consensus 34 n~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 34 SEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 357888999999999999999999988764
No 126
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.53 E-value=3.3e+02 Score=27.00 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=6.8
Q ss_pred hhcCCCCcceecc
Q 006170 572 QYSGKSSSATMYN 584 (658)
Q Consensus 572 d~~~~~~~~~~~~ 584 (658)
+.+...+|+.-++
T Consensus 153 ~~~~i~AP~~G~V 165 (369)
T 4dk0_A 153 GYTKITSPIDGTV 165 (369)
T ss_dssp CCSSCCCSCCSCC
T ss_pred hcCEEECCCCeEE
Confidence 3455566665443
No 127
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.36 E-value=3.6e+02 Score=26.75 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh
Q 006170 341 EKVKSLEEQLKESEIRLQNANACFQT 366 (658)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe 366 (658)
..+...+.++...+.++..+++.++.
T Consensus 70 ~~l~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444443
No 128
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.35 E-value=7e+02 Score=25.48 Aligned_cols=126 Identities=11% Similarity=0.112 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHhhhhcccceec------cccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhccc
Q 006170 110 REVERLLDTIHVEIVNVHHKIS------SCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIH 183 (658)
Q Consensus 110 ~ele~~~~~lq~~I~~~~~~~~------s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~~~ 183 (658)
..|+..+.+++..+.......+ .+......+-.+ +...+.....|.....+...+-.-..+|++-...+..
T Consensus 69 ~~le~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~l~~~r~~~l~~~~~R~~~Le~~~~~f~~~~~~~~~ 145 (476)
T 1hci_A 69 CQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRL---EQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHET 145 (476)
T ss_dssp HHTTTHHHHTTTTTTTTTSCCCCCCGGGCSSSHHHHHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788776654443322 222233344444 3333334443433222221111115778888887777
Q ss_pred CCCcccccccccCCc-ccccccccccchHHHHHHHHHHHHHhhhhhhhHHhhHHHhhhHHHHHhh
Q 006170 184 GNNDEALEFSANGQL-SNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLK 247 (658)
Q Consensus 184 ~~~~~~~~~~e~~~~-~~~~~~~~mqt~eqqR~iLrMLekSlA~EldLEKkL~es~~~eeeLk~k 247 (658)
|=.+....++.++ + | ..+..+++...-...++..|+. .+..+........+|...
T Consensus 146 Wl~e~e~~l~~~~-~~g-----~dl~~v~~ll~kh~~~~~~l~~---~~~~v~~l~~~~~~L~~~ 201 (476)
T 1hci_A 146 WAYGKEQILLQKD-YES-----ASLTEVRALLRKHEAFESDLAA---HQDRVEQIAAIAQELNEL 201 (476)
T ss_dssp HHTTHHHHHHCCG-GGS-----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCC-ccC-----CCHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhC
Confidence 7766655454322 2 2 1223344333334555555553 344444444455555433
No 129
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=20.26 E-value=3.9e+02 Score=22.54 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
|++++..+..+.++...++..+...+.....+-..|......++..+..=..--.+|.-||++.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEI 65 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEI 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777665554433333444445555555554444445666666654
No 130
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.22 E-value=2.7e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (658)
++.+||..||.-++..+..+..--+..+.+ ..-|.+||..|+..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 577899999999998888877765554433 334555555555543
No 131
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.11 E-value=4.7e+02 Score=28.12 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 006170 342 KVKSLEEQLKES 353 (658)
Q Consensus 342 KvksLE~qLdes 353 (658)
|.+.+..++..+
T Consensus 85 ~skkml~~~~~~ 96 (409)
T 1m1j_C 85 KSKKIIEEIIRY 96 (409)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 132
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.01 E-value=3.7e+02 Score=22.69 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (658)
.|+.+|+....+||..+.+++..... ++..++..|..++.++.++....+.-......|
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~----------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR----------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666667666666654322 344555556666555555444433333333333
Done!