Query 006170
Match_columns 658
No_of_seqs 97 out of 106
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 17:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006170.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006170hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 57.7 43 0.0031 26.9 10.4 36 529-564 67-102 (107)
2 d2ap3a1 a.24.27.1 (A:12-196) H 57.1 40 0.0029 26.2 16.9 22 333-354 21-42 (185)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 43.9 74 0.0054 25.4 10.1 36 334-369 65-100 (107)
4 d1f5na1 a.114.1.1 (A:284-583) 26.8 1.9E+02 0.014 25.1 11.3 11 406-416 286-296 (300)
5 d1ux5a_ a.207.1.1 (A:) Bni1 {B 26.4 74 0.0054 30.7 7.9 126 43-181 242-367 (411)
6 d1s35a2 a.7.1.1 (A:1169-1273) 24.7 1.3E+02 0.0097 22.5 9.0 61 332-392 31-102 (105)
7 d1lrza1 a.2.7.4 (A:245-309) Me 24.4 1.4E+02 0.01 22.7 8.1 48 338-385 7-60 (65)
8 d1seta1 a.2.7.1 (A:1-110) Sery 19.3 2E+02 0.015 22.6 8.7 87 307-394 7-96 (110)
9 d1v9da_ a.207.1.1 (A:) Diaphan 17.9 3.4E+02 0.025 24.9 10.7 107 59-178 171-277 (332)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 15.7 2.6E+02 0.019 22.3 11.4 36 532-567 93-128 (133)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=57.73 E-value=43 Score=26.95 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006170 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (658)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLedQL~s~keen 564 (658)
..++..|.++++.-+..|.+....++.++..+..++
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777666666666666666665555544
No 2
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=57.05 E-value=40 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 006170 333 NSEVLTMKEKVKSLEEQLKESE 354 (658)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~ 354 (658)
...+..+.+++..++.++....
T Consensus 21 ~~~~~~~~~k~~~~e~~~~~~~ 42 (185)
T d2ap3a1 21 EEPIKTVGKKIAELDEKKKKLT 42 (185)
T ss_dssp THHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555554433
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=43.94 E-value=74 Score=25.44 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 006170 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE 369 (658)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~ 369 (658)
+=..+|.+++..++..++..+.|+.....++++...
T Consensus 65 e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~ 100 (107)
T d1fxka_ 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666655555555444333
No 4
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.79 E-value=1.9e+02 Score=25.09 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=4.4
Q ss_pred hHHHHHHhhhh
Q 006170 406 NLELSEEINFL 416 (658)
Q Consensus 406 NdELerelk~L 416 (658)
...+.+++..|
T Consensus 286 ~~~l~~ei~~L 296 (300)
T d1f5na1 286 SRIMKNEIQDL 296 (300)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 5
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.40 E-value=74 Score=30.75 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=77.6
Q ss_pred hhhhhheecccccchhhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhh
Q 006170 43 MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122 (658)
Q Consensus 43 ~~~lt~vel~la~~SEKl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~ 122 (658)
...|+++- |+=-..=|..=||.++.++.....|+-.+..+- .+|++|-.+|+ +-+.++|.+|.+-+..++.+
T Consensus 242 L~sL~kL~-d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el-----~~v~~a~~~~~--~~l~~~~~~L~~~l~~i~~~ 313 (411)
T d1ux5a_ 242 LSTLQRLT-FIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERS 313 (411)
T ss_dssp GGGGGGSS-SCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhh-hccCCCCCeeHHHHHHHHHHHhCcHhhccHHHH-----HHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 45555542 222222344557777777777766665544332 34566666552 34778888998888888888
Q ss_pred hhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 006170 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (658)
Q Consensus 123 I~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~~~~ 181 (658)
+..+.....+-.+.+..|.. .+..=+..++..+..++..+.++... |..+..+|
T Consensus 314 ~~~~~~~~~~~~~~~d~f~~--~~~~fl~~~~~~~~~l~~~~~~~~~~---~~~~~~yf 367 (411)
T d1ux5a_ 314 VEIGNLSDSSKFHPLDKVLI--KTLPVLPEARKKGDLLEDEVKLTIME---FESLMHTY 367 (411)
T ss_dssp HHHSTTTCTTSSCTTCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHT
T ss_pred HHhhcccccccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 87655543333333444542 13777888888888888888887766 55666665
No 6
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.66 E-value=1.3e+02 Score=22.53 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----------HHHHHhHHHHHHHHHHHHHhhhhhH
Q 006170 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-----------QEQLNEMDNFIESLKESLYGAESRA 392 (658)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-----------E~EVaaLerrIelLKEel~rAEsRa 392 (658)
.-+.|..|.+|.+.++.++.....++.......+.. ...+..+..+-+.|.+.+..-..|+
T Consensus 31 dl~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~~~r~~~L 102 (105)
T d1s35a2 31 SLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLL 102 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999998877655444332 4455566666666666555544443
No 7
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=24.42 E-value=1.4e+02 Score=22.68 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------hHhhhhhhHHHHHhHHHHHHHHHHHH
Q 006170 338 TMKEKVKSLEEQLKESEIRLQN------ANACFQTSQEQLNEMDNFIESLKESL 385 (658)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~------A~aklEesE~EVaaLerrIelLKEel 385 (658)
.|+.+...|+.++...+..|.. +..++...+.++.+.++||...++-+
T Consensus 7 ~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 7 ELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555432 23333333556666666666555443
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=19.26 E-value=2e+02 Score=22.59 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHhhhhhhHHHHHhHHHHHHHHHH
Q 006170 307 LKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL-QNANACFQTSQEQLNEMDNFIESLKE 383 (658)
Q Consensus 307 l~sKL~~~~eqL~~k--~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL-~~A~aklEesE~EVaaLerrIelLKE 383 (658)
|+...+...+.|..| +..++.+-.- +.+.+.++.++..|-.+......+. .......++..+++.++...|..++.
T Consensus 7 ir~n~e~v~~~l~~R~~~~~ld~i~~l-d~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~ 85 (110)
T d1seta1 7 LRQEPEVFHRAIREKGVALDLEALLAL-DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE 85 (110)
T ss_dssp HHHCHHHHHHHHHHTTCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHH
Q 006170 384 SLYGAESRAES 394 (658)
Q Consensus 384 el~rAEsRa~t 394 (658)
++...++++..
T Consensus 86 ~~~~~~~~l~~ 96 (110)
T d1seta1 86 ALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 9
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.95 E-value=3.4e+02 Score=24.88 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=68.4
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 006170 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (658)
Q Consensus 59 Kl~NL~~l~M~l~~~~~d~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~I~~~~~~~~s~~~~~~ 138 (658)
|..=||.++-++.....++..+..+=.+ |.+|--.++ .-|.+++.+|.+=+..++.++....... +.+.
T Consensus 171 ~~tLL~~iv~~~~~~~p~l~~~~~eL~~-----v~~ask~~~--~~l~~~~~~l~~~l~~~~~~l~~~~~~~----~~~d 239 (332)
T d1v9da_ 171 KMTLLHFLAELCENDHPEVLKFPDELAH-----VEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPAAT----DEKD 239 (332)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCTT-----HHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCCCS----SSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhhhhh-----HHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHhccccc----cchh
Confidence 4444677777777766666655554333 444444443 3467889999888888888887554322 2233
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 006170 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (658)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~qe~~~eik~qsa~f~r~~ 178 (658)
.|.. .+..=+.++...++..+..+.++.....+.-..+
T Consensus 240 ~f~~--~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yf 277 (332)
T d1v9da_ 240 KFVE--KMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYF 277 (332)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 2367788888889888888888887644444433
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.71 E-value=2.6e+02 Score=22.29 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHH
Q 006170 532 VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (658)
Q Consensus 532 ae~Rak~aE~lV~KL~~ErdrLedQL~s~keenK~L 567 (658)
+..|.+.++..+.+|..++..+.+++..+......+
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665555554444433
Done!