Query 006171
Match_columns 658
No_of_seqs 557 out of 3341
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 4.9E-35 1.1E-39 317.6 26.6 334 135-568 24-364 (493)
2 KOG4277 Uncharacterized conser 100.0 1.1E-31 2.5E-36 267.3 22.0 279 151-506 41-329 (468)
3 TIGR01130 ER_PDI_fam protein d 100.0 6.6E-27 1.4E-31 260.4 27.4 332 137-566 2-343 (462)
4 PTZ00102 disulphide isomerase; 99.9 4E-25 8.6E-30 247.8 27.1 317 137-566 33-354 (477)
5 KOG0713 Molecular chaperone (D 99.9 1.1E-24 2.4E-29 223.5 6.5 147 34-194 13-165 (336)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.7E-21 3.6E-26 175.9 7.0 107 126-249 3-113 (113)
7 KOG0912 Thiol-disulfide isomer 99.8 8E-20 1.7E-24 183.8 18.5 214 141-378 1-222 (375)
8 COG0484 DnaJ DnaJ-class molecu 99.8 9.6E-21 2.1E-25 199.8 6.2 70 36-105 3-75 (371)
9 PF01216 Calsequestrin: Calseq 99.8 6.2E-18 1.3E-22 173.7 25.1 329 124-549 26-369 (383)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.7E-20 5.9E-25 164.5 6.3 100 137-249 2-101 (101)
11 KOG0191 Thioredoxin/protein di 99.8 7.6E-19 1.6E-23 191.9 17.7 211 139-367 32-255 (383)
12 cd03007 PDI_a_ERp29_N PDIa fam 99.8 5.1E-20 1.1E-24 165.8 5.6 103 138-252 3-115 (116)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.9E-19 6.2E-24 158.6 5.9 101 137-249 2-104 (104)
14 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.3E-19 7.2E-24 159.6 5.9 101 137-249 2-108 (108)
15 KOG0712 Molecular chaperone (D 99.8 3.5E-19 7.7E-24 185.5 6.6 70 36-105 3-72 (337)
16 PF00085 Thioredoxin: Thioredo 99.7 1.8E-18 3.9E-23 152.1 4.8 102 138-252 1-103 (103)
17 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.8E-18 1E-22 151.8 6.9 105 138-249 2-108 (109)
18 cd02994 PDI_a_TMX PDIa family, 99.7 6E-18 1.3E-22 149.3 6.6 98 137-250 2-100 (101)
19 KOG1731 FAD-dependent sulfhydr 99.7 1.8E-17 3.9E-22 180.0 11.0 223 137-373 40-285 (606)
20 cd03065 PDI_b_Calsequestrin_N 99.7 2E-17 4.3E-22 150.6 8.2 102 137-252 10-118 (120)
21 cd02993 PDI_a_APS_reductase PD 99.7 1.4E-17 2.9E-22 149.6 5.4 102 137-249 2-109 (109)
22 cd03001 PDI_a_P5 PDIa family, 99.7 3.1E-17 6.7E-22 144.8 6.8 100 138-249 2-102 (103)
23 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.3E-17 9.3E-22 143.9 7.1 100 138-249 2-104 (104)
24 PRK14288 chaperone protein Dna 99.7 2E-17 4.4E-22 179.1 5.6 69 36-104 2-73 (369)
25 cd03005 PDI_a_ERp46 PDIa famil 99.7 4E-17 8.6E-22 143.8 5.1 98 138-249 2-102 (102)
26 PRK14296 chaperone protein Dna 99.7 4E-17 8.7E-22 176.8 6.2 69 36-104 3-73 (372)
27 KOG0190 Protein disulfide isom 99.7 5.7E-17 1.2E-21 177.1 7.3 104 136-252 366-472 (493)
28 cd02963 TRX_DnaJ TRX domain, D 99.7 5.1E-17 1.1E-21 146.5 5.6 100 139-251 7-110 (111)
29 PTZ00443 Thioredoxin domain-co 99.7 5.6E-17 1.2E-21 163.2 4.8 104 136-252 30-138 (224)
30 PTZ00037 DnaJ_C chaperone prot 99.6 1.4E-16 3.1E-21 174.3 5.6 68 36-104 27-94 (421)
31 KOG0910 Thioredoxin-like prote 99.6 2E-16 4.3E-21 146.4 5.4 103 137-252 44-147 (150)
32 PRK14279 chaperone protein Dna 99.6 2E-16 4.3E-21 172.5 5.3 67 36-102 8-77 (392)
33 PRK14286 chaperone protein Dna 99.6 2.4E-16 5.1E-21 171.0 5.5 69 36-104 3-74 (372)
34 cd02999 PDI_a_ERp44_like PDIa 99.6 6.8E-16 1.5E-20 136.5 6.9 84 151-249 16-100 (100)
35 PRK14287 chaperone protein Dna 99.6 3.1E-16 6.8E-21 170.0 5.7 69 36-104 3-73 (371)
36 cd02956 ybbN ybbN protein fami 99.6 5.6E-16 1.2E-20 135.3 6.1 93 144-249 1-95 (96)
37 cd02997 PDI_a_PDIR PDIa family 99.6 5.6E-16 1.2E-20 136.8 5.9 101 138-249 2-104 (104)
38 cd02992 PDI_a_QSOX PDIa family 99.6 8.3E-16 1.8E-20 139.3 7.1 103 138-247 3-110 (114)
39 cd02998 PDI_a_ERp38 PDIa famil 99.6 8.9E-16 1.9E-20 135.5 7.1 101 138-249 2-105 (105)
40 TIGR01126 pdi_dom protein disu 99.6 9.1E-16 2E-20 134.7 6.8 99 141-252 1-101 (102)
41 PRK14298 chaperone protein Dna 99.6 5E-16 1.1E-20 168.6 5.9 69 36-104 4-74 (377)
42 PRK14276 chaperone protein Dna 99.6 5.6E-16 1.2E-20 168.6 6.1 69 36-104 3-73 (380)
43 PRK14282 chaperone protein Dna 99.6 6.5E-16 1.4E-20 167.5 6.2 69 36-104 3-75 (369)
44 PRK14283 chaperone protein Dna 99.6 6.5E-16 1.4E-20 168.0 5.8 69 36-104 4-74 (378)
45 PRK14285 chaperone protein Dna 99.6 7.6E-16 1.6E-20 166.6 5.7 68 37-104 3-73 (365)
46 KOG0717 Molecular chaperone (D 99.6 2E-16 4.4E-21 167.3 1.2 68 36-103 7-78 (508)
47 PRK14278 chaperone protein Dna 99.6 1E-15 2.2E-20 166.3 6.6 66 37-102 3-70 (378)
48 PRK14299 chaperone protein Dna 99.6 9.3E-16 2E-20 161.2 5.7 68 36-103 3-72 (291)
49 TIGR00424 APS_reduc 5'-adenyly 99.6 1.2E-15 2.6E-20 167.8 6.4 105 137-251 352-461 (463)
50 PRK14291 chaperone protein Dna 99.6 1.1E-15 2.4E-20 166.4 6.0 69 36-104 2-72 (382)
51 PRK14280 chaperone protein Dna 99.6 1E-15 2.2E-20 166.3 5.7 69 36-104 3-73 (376)
52 KOG0716 Molecular chaperone (D 99.6 1E-15 2.2E-20 152.9 4.9 70 36-105 30-102 (279)
53 PRK14277 chaperone protein Dna 99.6 1.1E-15 2.4E-20 166.6 5.7 69 36-104 4-75 (386)
54 PRK14294 chaperone protein Dna 99.6 1.1E-15 2.4E-20 165.6 5.6 69 36-104 3-74 (366)
55 PRK14297 chaperone protein Dna 99.6 1.3E-15 2.8E-20 165.8 5.9 69 36-104 3-74 (380)
56 PRK14301 chaperone protein Dna 99.6 1.4E-15 3E-20 165.0 5.8 69 36-104 3-74 (373)
57 cd03000 PDI_a_TMX3 PDIa family 99.6 4.9E-15 1.1E-19 131.7 7.7 94 144-252 7-103 (104)
58 PRK09381 trxA thioredoxin; Pro 99.6 3.5E-15 7.6E-20 133.6 6.8 103 137-252 4-107 (109)
59 PRK14284 chaperone protein Dna 99.6 1.6E-15 3.5E-20 165.6 5.6 67 37-103 1-70 (391)
60 PF00226 DnaJ: DnaJ domain; I 99.6 1.7E-15 3.7E-20 122.6 4.2 60 38-97 1-64 (64)
61 KOG0721 Molecular chaperone (D 99.6 4E-15 8.6E-20 144.0 7.3 69 36-104 98-169 (230)
62 COG3118 Thioredoxin domain-con 99.6 3.1E-15 6.7E-20 152.4 6.0 103 137-252 24-129 (304)
63 PRK14281 chaperone protein Dna 99.6 2.6E-15 5.7E-20 164.1 6.0 68 37-104 3-73 (397)
64 PRK14295 chaperone protein Dna 99.6 2.5E-15 5.3E-20 163.9 5.6 69 36-104 8-83 (389)
65 PLN02309 5'-adenylylsulfate re 99.6 3E-15 6.6E-20 164.6 6.3 104 137-252 346-456 (457)
66 cd02961 PDI_a_family Protein D 99.5 3.1E-15 6.7E-20 130.0 4.5 98 140-249 2-101 (101)
67 TIGR02187 GlrX_arch Glutaredox 99.5 8.8E-14 1.9E-18 140.1 15.7 187 153-362 19-214 (215)
68 PRK10767 chaperone protein Dna 99.5 3.7E-15 7.9E-20 162.0 5.8 69 36-104 3-74 (371)
69 PRK14290 chaperone protein Dna 99.5 6.8E-15 1.5E-19 159.4 6.4 68 37-104 3-74 (365)
70 PHA02278 thioredoxin-like prot 99.5 4.7E-15 1E-19 131.8 4.2 96 143-248 4-100 (103)
71 PRK14300 chaperone protein Dna 99.5 6.2E-15 1.3E-19 160.0 5.7 68 37-104 3-72 (372)
72 TIGR02349 DnaJ_bact chaperone 99.5 8.4E-15 1.8E-19 158.3 5.9 67 38-104 1-69 (354)
73 KOG0715 Molecular chaperone (D 99.5 8.5E-15 1.9E-19 152.8 5.4 68 36-103 42-111 (288)
74 KOG0718 Molecular chaperone (D 99.5 5.8E-15 1.3E-19 156.3 4.1 70 36-105 8-83 (546)
75 PTZ00341 Ring-infected erythro 99.5 9.3E-15 2E-19 167.2 6.0 70 36-105 572-643 (1136)
76 PRK14293 chaperone protein Dna 99.5 1.1E-14 2.3E-19 158.3 6.1 69 36-104 2-72 (374)
77 PRK14292 chaperone protein Dna 99.5 1E-14 2.2E-19 158.5 5.9 67 37-103 2-70 (371)
78 PRK14289 chaperone protein Dna 99.5 1.1E-14 2.5E-19 158.9 5.4 68 36-103 4-74 (386)
79 cd02985 TRX_CDSP32 TRX family, 99.5 1.6E-14 3.4E-19 128.4 5.2 96 143-250 3-100 (103)
80 KOG0691 Molecular chaperone (D 99.5 1.2E-14 2.6E-19 150.4 4.7 69 36-104 4-75 (296)
81 PRK10996 thioredoxin 2; Provis 99.5 1.6E-14 3.4E-19 135.6 4.7 103 137-252 36-138 (139)
82 PRK10266 curved DNA-binding pr 99.5 2.1E-14 4.5E-19 152.1 5.2 66 37-102 4-71 (306)
83 KOG0719 Molecular chaperone (D 99.5 3.4E-14 7.3E-19 138.6 5.1 68 36-103 13-85 (264)
84 cd02954 DIM1 Dim1 family; Dim1 99.5 2.3E-14 4.9E-19 128.8 2.3 76 144-228 3-80 (114)
85 TIGR01068 thioredoxin thioredo 99.4 8.3E-14 1.8E-18 121.7 5.7 98 142-252 2-100 (101)
86 cd02948 TRX_NDPK TRX domain, T 99.4 6.6E-14 1.4E-18 124.2 4.6 96 141-251 5-101 (102)
87 PTZ00102 disulphide isomerase; 99.4 1.2E-13 2.5E-18 155.2 7.6 106 136-253 357-465 (477)
88 KOG0191 Thioredoxin/protein di 99.4 1.6E-13 3.5E-18 150.0 8.3 105 137-253 145-252 (383)
89 PF13848 Thioredoxin_6: Thiore 99.4 9.4E-12 2E-16 121.2 19.7 148 293-492 9-158 (184)
90 smart00271 DnaJ DnaJ molecular 99.4 1.6E-13 3.6E-18 109.4 5.8 55 37-91 1-59 (60)
91 cd02965 HyaE HyaE family; HyaE 99.4 1.4E-13 2.9E-18 123.1 5.8 96 138-246 12-109 (111)
92 cd02962 TMX2 TMX2 family; comp 99.4 7.5E-14 1.6E-18 132.5 4.4 90 136-228 28-120 (152)
93 KOG0722 Molecular chaperone (D 99.4 1.2E-13 2.6E-18 135.9 5.7 95 4-100 2-98 (329)
94 cd02957 Phd_like Phosducin (Ph 99.4 8.4E-14 1.8E-18 125.8 4.1 90 136-240 4-96 (113)
95 cd06257 DnaJ DnaJ domain or J- 99.4 2.3E-13 5.1E-18 106.5 5.8 52 38-89 1-55 (55)
96 PHA03102 Small T antigen; Revi 99.4 1.6E-13 3.4E-18 129.1 5.4 67 37-104 5-73 (153)
97 cd02953 DsbDgamma DsbD gamma f 99.4 2.6E-13 5.5E-18 120.5 5.7 96 144-249 2-103 (104)
98 KOG0624 dsRNA-activated protei 99.4 4.9E-13 1.1E-17 137.4 7.4 64 36-99 393-462 (504)
99 TIGR03835 termin_org_DnaJ term 99.4 6.2E-13 1.3E-17 149.4 6.0 68 37-104 2-71 (871)
100 TIGR01130 ER_PDI_fam protein d 99.3 1.1E-12 2.3E-17 146.3 7.1 104 136-252 346-453 (462)
101 cd02950 TxlA TRX-like protein 99.3 1.7E-12 3.8E-17 122.2 7.2 101 144-255 11-112 (142)
102 cd02989 Phd_like_TxnDC9 Phosdu 99.3 9.2E-13 2E-17 119.2 4.5 82 137-228 5-87 (113)
103 PTZ00051 thioredoxin; Provisio 99.3 1.9E-12 4.2E-17 113.2 5.3 93 139-246 3-96 (98)
104 cd02947 TRX_family TRX family; 99.3 3.2E-12 7E-17 108.7 6.4 92 144-249 1-92 (93)
105 cd02984 TRX_PICOT TRX domain, 99.3 1.2E-12 2.6E-17 114.3 3.7 93 143-249 2-96 (97)
106 KOG0907 Thioredoxin [Posttrans 99.3 8.4E-12 1.8E-16 111.3 7.1 84 152-250 20-103 (106)
107 COG2214 CbpA DnaJ-class molecu 99.3 4.6E-12 1E-16 126.6 5.6 65 36-100 5-73 (237)
108 cd02949 TRX_NTR TRX domain, no 99.3 8E-12 1.7E-16 109.6 6.3 86 151-249 11-96 (97)
109 PLN00410 U5 snRNP protein, DIM 99.2 6E-12 1.3E-16 117.5 4.5 97 143-251 11-118 (142)
110 cd02975 PfPDO_like_N Pyrococcu 99.2 2.6E-11 5.6E-16 109.7 5.9 95 146-252 15-109 (113)
111 cd02987 Phd_like_Phd Phosducin 99.2 2E-11 4.2E-16 119.0 5.1 81 137-228 63-147 (175)
112 PRK01356 hscB co-chaperone Hsc 99.2 2.7E-11 5.9E-16 116.6 5.7 63 37-99 2-72 (166)
113 cd02982 PDI_b'_family Protein 99.2 5.1E-11 1.1E-15 105.1 6.3 87 152-252 11-102 (103)
114 PRK05014 hscB co-chaperone Hsc 99.1 4.4E-11 9.6E-16 115.8 5.9 62 37-98 1-72 (171)
115 cd02986 DLP Dim1 family, Dim1- 99.1 3.2E-11 6.9E-16 107.9 3.1 75 144-227 3-79 (114)
116 PRK03578 hscB co-chaperone Hsc 99.1 9E-11 1.9E-15 114.0 6.3 64 35-98 4-77 (176)
117 TIGR01295 PedC_BrcD bacterioci 99.1 9.2E-11 2E-15 107.6 5.5 104 138-249 8-120 (122)
118 PRK00294 hscB co-chaperone Hsc 99.1 1.7E-10 3.6E-15 111.7 6.1 63 36-98 3-75 (173)
119 cd02988 Phd_like_VIAF Phosduci 99.1 1.2E-10 2.6E-15 115.0 5.1 79 137-228 83-164 (192)
120 COG5407 SEC63 Preprotein trans 99.1 1.4E-10 2.9E-15 122.7 5.7 70 36-105 97-174 (610)
121 TIGR00411 redox_disulf_1 small 99.1 4.4E-10 9.6E-15 94.8 7.6 80 156-252 2-81 (82)
122 PTZ00100 DnaJ chaperone protei 99.0 2.1E-10 4.5E-15 102.7 5.0 52 36-88 64-115 (116)
123 KOG0720 Molecular chaperone (D 99.0 1.9E-10 4E-15 122.7 4.9 68 36-103 234-303 (490)
124 cd02951 SoxW SoxW family; SoxW 99.0 3E-10 6.6E-15 104.2 5.7 95 149-252 9-118 (125)
125 KOG0908 Thioredoxin-like prote 99.0 3.9E-10 8.5E-15 111.8 6.1 101 138-253 3-106 (288)
126 KOG0714 Molecular chaperone (D 99.0 2.2E-10 4.7E-15 119.8 4.1 69 36-104 2-74 (306)
127 PTZ00062 glutaredoxin; Provisi 98.9 6.6E-09 1.4E-13 103.3 11.3 162 143-336 6-174 (204)
128 cd02952 TRP14_like Human TRX-r 98.9 5.7E-10 1.2E-14 101.5 3.1 78 144-227 10-101 (119)
129 PHA02624 large T antigen; Prov 98.9 1E-09 2.2E-14 122.8 5.2 60 36-96 10-71 (647)
130 cd02983 P5_C P5 family, C-term 98.9 1.7E-08 3.8E-13 93.6 12.6 117 366-557 2-123 (130)
131 PRK09430 djlA Dna-J like membr 98.9 1.3E-09 2.9E-14 113.0 4.5 54 36-89 199-262 (267)
132 KOG0550 Molecular chaperone (D 98.8 1.6E-09 3.4E-14 114.5 3.7 64 36-99 372-439 (486)
133 PF13848 Thioredoxin_6: Thiore 98.8 1.3E-07 2.8E-12 92.0 16.2 169 171-362 8-184 (184)
134 KOG0913 Thiol-disulfide isomer 98.8 2.8E-09 6E-14 105.1 2.8 102 135-252 23-125 (248)
135 PHA02125 thioredoxin-like prot 98.7 1E-08 2.2E-13 85.7 4.7 69 157-247 2-71 (75)
136 TIGR02187 GlrX_arch Glutaredox 98.7 2.4E-08 5.3E-13 100.6 8.1 82 153-251 133-214 (215)
137 cd02959 ERp19 Endoplasmic reti 98.7 9.5E-09 2.1E-13 93.6 4.2 90 151-249 17-109 (117)
138 TIGR00412 redox_disulf_2 small 98.7 2E-08 4.2E-13 84.3 4.8 73 157-249 2-75 (76)
139 PRK00293 dipZ thiol:disulfide 98.7 4.4E-08 9.6E-13 112.3 8.4 102 143-252 460-569 (571)
140 PRK01773 hscB co-chaperone Hsc 98.6 3.5E-08 7.5E-13 95.6 5.5 62 37-98 2-73 (173)
141 KOG1150 Predicted molecular ch 98.6 4.3E-08 9.4E-13 93.9 5.0 63 35-97 51-117 (250)
142 PF13098 Thioredoxin_2: Thiore 98.6 4E-08 8.7E-13 88.0 3.7 89 151-249 3-112 (112)
143 PRK03147 thiol-disulfide oxido 98.5 1.8E-07 3.8E-12 90.5 7.6 92 152-252 60-171 (173)
144 TIGR00714 hscB Fe-S protein as 98.5 2E-07 4.3E-12 89.2 5.4 51 49-99 3-61 (157)
145 TIGR02740 TraF-like TraF-like 98.4 3.8E-07 8.2E-12 95.1 7.5 90 152-252 165-263 (271)
146 cd02967 mauD Methylamine utili 98.4 4.1E-07 8.9E-12 81.6 6.7 63 152-220 20-82 (114)
147 cd02973 TRX_GRX_like Thioredox 98.4 3.8E-07 8.3E-12 74.0 5.2 57 156-222 2-58 (67)
148 cd02955 SSP411 TRX domain, SSP 98.4 3.3E-07 7.2E-12 84.2 4.1 80 146-228 8-92 (124)
149 cd03011 TlpA_like_ScsD_MtbDsbE 98.4 8.4E-07 1.8E-11 80.7 6.8 95 142-247 9-120 (123)
150 TIGR02738 TrbB type-F conjugat 98.3 1.2E-06 2.5E-11 83.6 7.3 93 152-251 49-151 (153)
151 KOG0914 Thioredoxin-like prote 98.3 3E-07 6.5E-12 89.7 3.2 87 139-228 127-217 (265)
152 cd03009 TryX_like_TryX_NRX Try 98.3 1.1E-06 2.5E-11 81.0 6.4 70 152-227 17-110 (131)
153 PRK14018 trifunctional thiored 98.3 1.5E-06 3.3E-11 97.6 8.0 91 151-251 54-171 (521)
154 COG5269 ZUO1 Ribosome-associat 98.3 6.5E-07 1.4E-11 89.6 4.4 67 36-102 42-116 (379)
155 cd02964 TryX_like_family Trypa 98.2 1.8E-06 4E-11 80.0 6.2 70 152-227 16-110 (132)
156 cd02966 TlpA_like_family TlpA- 98.2 1.4E-06 2.9E-11 76.8 5.1 69 153-227 19-108 (116)
157 cd03010 TlpA_like_DsbE TlpA-li 98.2 1.3E-06 2.8E-11 80.1 4.6 82 152-245 24-126 (127)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 4.9E-06 1.1E-10 72.0 6.9 77 152-246 11-87 (89)
159 cd03007 PDI_a_ERp29_N PDIa fam 98.2 1.8E-05 4E-10 71.6 10.6 98 262-363 6-115 (116)
160 PRK11509 hydrogenase-1 operon 98.1 8.8E-06 1.9E-10 75.2 7.3 101 140-253 21-124 (132)
161 cd03065 PDI_b_Calsequestrin_N 98.0 4.4E-05 9.5E-10 69.8 10.8 94 262-362 14-117 (120)
162 KOG0568 Molecular chaperone (D 98.0 6.2E-06 1.3E-10 80.8 5.3 55 36-90 46-103 (342)
163 KOG1789 Endocytosis protein RM 98.0 4.6E-06 1E-10 96.1 5.0 54 36-89 1280-1337(2235)
164 TIGR00385 dsbE periplasmic pro 98.0 6.3E-06 1.4E-10 80.2 5.3 94 152-252 62-170 (173)
165 cd02958 UAS UAS family; UAS is 98.0 1.1E-05 2.4E-10 72.8 5.9 98 145-252 5-110 (114)
166 PF00085 Thioredoxin: Thioredo 98.0 1.9E-05 4.2E-10 68.8 7.2 96 262-363 4-103 (103)
167 PRK15412 thiol:disulfide inter 98.0 1.4E-05 3E-10 78.7 6.9 94 152-252 67-175 (185)
168 cd03008 TryX_like_RdCVF Trypar 98.0 1E-05 2.3E-10 76.4 5.7 77 152-228 24-124 (146)
169 PF13905 Thioredoxin_8: Thiore 97.9 9.6E-06 2.1E-10 70.3 4.2 74 153-226 1-92 (95)
170 cd03004 PDI_a_ERdj5_C PDIa fam 97.9 6.1E-05 1.3E-09 66.4 8.6 80 279-360 20-104 (104)
171 PRK13728 conjugal transfer pro 97.9 2.6E-05 5.6E-10 76.1 6.5 88 157-252 73-170 (181)
172 COG4232 Thiol:disulfide interc 97.8 1.4E-05 3E-10 89.3 4.9 99 145-252 464-567 (569)
173 PLN02919 haloacid dehalogenase 97.8 2.8E-05 6E-10 95.4 7.8 91 152-252 419-535 (1057)
174 cd03006 PDI_a_EFP1_N PDIa fami 97.8 7.1E-05 1.5E-09 67.7 8.2 81 277-360 28-113 (113)
175 cd01659 TRX_superfamily Thiore 97.8 3.2E-05 6.9E-10 59.6 5.1 63 157-226 1-63 (69)
176 cd03002 PDI_a_MPD1_like PDI fa 97.8 0.00012 2.7E-09 64.8 8.9 92 268-361 10-109 (109)
177 cd03003 PDI_a_ERdj5_N PDIa fam 97.7 0.00014 3.1E-09 63.8 8.6 78 279-359 19-100 (101)
178 PF13899 Thioredoxin_7: Thiore 97.7 2.6E-05 5.6E-10 66.2 3.4 64 151-224 15-81 (82)
179 cd02981 PDI_b_family Protein D 97.7 0.00022 4.8E-09 62.0 9.0 90 266-363 8-97 (97)
180 TIGR02196 GlrX_YruB Glutaredox 97.7 6.8E-05 1.5E-09 61.0 5.2 71 157-249 2-73 (74)
181 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00022 4.7E-09 63.5 8.8 93 262-360 6-108 (108)
182 TIGR02661 MauD methylamine deh 97.7 0.00016 3.5E-09 71.5 8.4 91 152-249 73-175 (189)
183 cd03012 TlpA_like_DipZ_like Tl 97.6 9.6E-05 2.1E-09 67.8 6.0 42 152-193 22-64 (126)
184 cd03066 PDI_b_Calsequestrin_mi 97.5 0.0006 1.3E-08 60.4 9.8 95 262-364 5-101 (102)
185 cd03001 PDI_a_P5 PDIa family, 97.5 0.00078 1.7E-08 58.8 10.4 67 292-360 36-102 (103)
186 PLN02399 phospholipid hydroper 97.5 0.00042 9.2E-09 70.7 9.4 98 152-252 98-233 (236)
187 PF07912 ERp29_N: ERp29, N-ter 97.5 0.00024 5.2E-09 64.1 6.6 105 139-252 7-118 (126)
188 cd02993 PDI_a_APS_reductase PD 97.5 0.0004 8.6E-09 62.1 7.8 97 262-360 6-109 (109)
189 COG3118 Thioredoxin domain-con 97.5 0.00028 6E-09 73.0 7.5 97 262-363 28-129 (304)
190 COG0526 TrxA Thiol-disulfide i 97.4 0.00027 5.9E-09 61.3 6.0 68 153-227 32-100 (127)
191 cd03069 PDI_b_ERp57 PDIb famil 97.4 0.00081 1.8E-08 59.8 9.0 91 264-363 7-103 (104)
192 smart00594 UAS UAS domain. 97.4 0.00034 7.3E-09 64.1 6.6 98 145-249 15-121 (122)
193 cd02960 AGR Anterior Gradient 97.4 0.0001 2.2E-09 68.1 3.0 73 145-227 11-90 (130)
194 TIGR01126 pdi_dom protein disu 97.4 0.0011 2.3E-08 57.6 9.3 83 278-363 13-101 (102)
195 TIGR00424 APS_reduc 5'-adenyly 97.4 0.00069 1.5E-08 75.5 9.5 100 262-362 356-461 (463)
196 cd02999 PDI_a_ERp44_like PDIa 97.3 0.00059 1.3E-08 60.2 7.0 80 277-360 17-100 (100)
197 cd00340 GSH_Peroxidase Glutath 97.3 0.00053 1.1E-08 65.1 7.0 42 152-194 21-63 (152)
198 PTZ00056 glutathione peroxidas 97.3 0.001 2.3E-08 66.3 9.0 57 152-208 38-103 (199)
199 TIGR02540 gpx7 putative glutat 97.3 0.0012 2.5E-08 62.8 8.8 42 152-193 21-63 (153)
200 KOG4277 Uncharacterized conser 97.2 0.002 4.4E-08 66.1 10.5 106 268-375 34-143 (468)
201 PRK11509 hydrogenase-1 operon 97.2 0.0027 5.8E-08 58.9 10.4 96 268-369 27-129 (132)
202 KOG0723 Molecular chaperone (D 97.2 0.00054 1.2E-08 59.8 5.3 49 41-90 60-108 (112)
203 KOG0910 Thioredoxin-like prote 97.2 0.0012 2.6E-08 62.0 7.2 82 279-363 63-147 (150)
204 TIGR02200 GlrX_actino Glutared 97.2 0.00034 7.4E-09 57.8 3.3 57 157-226 2-60 (77)
205 cd02956 ybbN ybbN protein fami 97.1 0.0022 4.7E-08 55.5 8.5 81 278-361 12-96 (96)
206 cd02965 HyaE HyaE family; HyaE 97.1 0.0032 6.9E-08 56.7 9.6 84 268-357 20-109 (111)
207 PLN02412 probable glutathione 97.1 0.0019 4.2E-08 62.4 8.9 43 152-194 28-71 (167)
208 PF08534 Redoxin: Redoxin; In 97.1 0.00042 9.1E-09 64.9 4.0 77 152-228 27-126 (146)
209 cd02981 PDI_b_family Protein D 97.1 0.00088 1.9E-08 58.2 5.6 87 146-251 10-96 (97)
210 PF13192 Thioredoxin_3: Thiore 97.1 0.00059 1.3E-08 57.0 4.3 73 158-250 3-76 (76)
211 cd02998 PDI_a_ERp38 PDIa famil 97.1 0.0022 4.8E-08 55.9 7.9 81 278-360 18-105 (105)
212 cd02963 TRX_DnaJ TRX domain, D 97.0 0.0031 6.6E-08 56.7 8.6 82 278-362 24-110 (111)
213 cd02995 PDI_a_PDI_a'_C PDIa fa 97.0 0.0029 6.2E-08 55.2 8.2 79 279-360 19-104 (104)
214 PLN02309 5'-adenylylsulfate re 97.0 0.0022 4.7E-08 71.5 9.1 99 262-362 350-455 (457)
215 cd02969 PRX_like1 Peroxiredoxi 97.0 0.0026 5.6E-08 61.5 8.2 96 152-252 24-151 (171)
216 TIGR03143 AhpF_homolog putativ 97.0 0.014 3.1E-07 67.2 15.6 185 152-360 365-554 (555)
217 cd02961 PDI_a_family Protein D 97.0 0.0026 5.6E-08 54.5 7.4 67 292-360 33-101 (101)
218 TIGR01068 thioredoxin thioredo 97.0 0.0045 9.7E-08 53.4 8.8 82 279-363 15-100 (101)
219 cd03005 PDI_a_ERp46 PDIa famil 97.0 0.0031 6.7E-08 54.9 7.8 67 291-360 33-102 (102)
220 cd02997 PDI_a_PDIR PDIa family 96.9 0.0044 9.6E-08 54.1 8.3 68 292-360 35-104 (104)
221 cd02953 DsbDgamma DsbD gamma f 96.9 0.0034 7.4E-08 55.3 7.4 62 299-360 39-103 (104)
222 cd02994 PDI_a_TMX PDIa family, 96.9 0.005 1.1E-07 53.8 8.2 79 280-362 19-101 (101)
223 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.00093 2E-08 58.0 3.2 97 143-251 9-110 (112)
224 PF13728 TraF: F plasmid trans 96.8 0.0022 4.8E-08 64.7 6.4 86 152-247 119-212 (215)
225 PRK09381 trxA thioredoxin; Pro 96.8 0.0055 1.2E-07 54.4 8.1 83 278-363 21-107 (109)
226 cd02982 PDI_b'_family Protein 96.7 0.0046 1E-07 54.1 7.0 82 279-362 13-101 (103)
227 cd02950 TxlA TRX-like protein 96.7 0.0068 1.5E-07 57.1 8.4 87 277-363 19-109 (142)
228 cd03068 PDI_b_ERp72 PDIb famil 96.7 0.012 2.5E-07 52.8 9.3 95 262-363 5-107 (107)
229 cd03073 PDI_b'_ERp72_ERp57 PDI 96.7 0.016 3.5E-07 52.2 10.2 65 396-492 16-84 (111)
230 PF00578 AhpC-TSA: AhpC/TSA fa 96.6 0.0019 4E-08 58.4 3.9 55 152-206 24-80 (124)
231 PTZ00443 Thioredoxin domain-co 96.6 0.0059 1.3E-07 61.9 7.7 70 292-365 70-140 (224)
232 PF02114 Phosducin: Phosducin; 96.6 0.0014 3.1E-08 68.1 3.1 104 137-252 126-237 (265)
233 PRK10996 thioredoxin 2; Provis 96.6 0.0087 1.9E-07 56.1 8.2 83 278-363 52-138 (139)
234 PHA02278 thioredoxin-like prot 96.6 0.008 1.7E-07 53.4 7.3 82 278-360 14-101 (103)
235 TIGR02180 GRX_euk Glutaredoxin 96.5 0.0017 3.7E-08 54.5 2.7 57 157-221 1-59 (84)
236 KOG3192 Mitochondrial J-type c 96.4 0.0021 4.6E-08 60.0 2.9 62 36-97 7-78 (168)
237 cd03000 PDI_a_TMX3 PDIa family 96.4 0.018 3.9E-07 50.7 8.7 80 279-362 16-102 (104)
238 cd03017 PRX_BCP Peroxiredoxin 96.3 0.0088 1.9E-07 55.3 6.4 55 153-207 23-79 (140)
239 cd03072 PDI_b'_ERp44 PDIb' fam 96.3 0.0084 1.8E-07 54.0 5.9 102 138-252 1-107 (111)
240 cd02985 TRX_CDSP32 TRX family, 96.3 0.026 5.7E-07 49.8 8.9 90 268-361 6-100 (103)
241 cd02948 TRX_NDPK TRX domain, T 96.2 0.025 5.4E-07 49.8 8.3 87 268-362 10-101 (102)
242 KOG2501 Thioredoxin, nucleored 96.1 0.012 2.5E-07 55.9 6.1 70 152-227 32-126 (157)
243 cd02949 TRX_NTR TRX domain, no 96.1 0.022 4.8E-07 49.5 7.4 82 277-361 12-97 (97)
244 TIGR01626 ytfJ_HI0045 conserve 96.1 0.015 3.2E-07 57.2 6.9 93 152-247 58-174 (184)
245 TIGR02739 TraF type-F conjugat 96.1 0.0094 2E-07 61.5 5.7 91 152-252 149-247 (256)
246 KOG0907 Thioredoxin [Posttrans 96.0 0.041 8.8E-07 49.2 8.8 81 278-363 21-105 (106)
247 KOG0912 Thiol-disulfide isomer 96.0 0.029 6.2E-07 58.2 8.6 119 292-424 31-153 (375)
248 cd02975 PfPDO_like_N Pyrococcu 96.0 0.051 1.1E-06 49.0 9.4 67 293-362 41-108 (113)
249 PRK10606 btuE putative glutath 96.0 0.021 4.5E-07 56.2 7.4 55 152-207 24-88 (183)
250 KOG2603 Oligosaccharyltransfer 95.9 0.038 8.3E-07 57.6 9.0 109 135-252 39-165 (331)
251 cd02954 DIM1 Dim1 family; Dim1 95.9 0.02 4.4E-07 51.8 6.2 62 278-341 14-79 (114)
252 cd02983 P5_C P5 family, C-term 95.9 0.04 8.7E-07 51.1 8.4 87 277-365 19-116 (130)
253 PRK00522 tpx lipid hydroperoxi 95.8 0.015 3.3E-07 56.1 5.7 55 152-207 43-98 (167)
254 cd02989 Phd_like_TxnDC9 Phosdu 95.8 0.042 9.1E-07 49.5 8.2 47 292-341 40-86 (113)
255 cd03015 PRX_Typ2cys Peroxiredo 95.8 0.036 7.8E-07 53.7 8.3 43 153-195 29-73 (173)
256 PRK13703 conjugal pilus assemb 95.8 0.014 3.1E-07 59.8 5.6 90 152-251 142-239 (248)
257 TIGR03137 AhpC peroxiredoxin. 95.8 0.041 9E-07 54.2 8.6 44 152-195 30-75 (187)
258 PTZ00256 glutathione peroxidas 95.7 0.035 7.7E-07 54.5 7.9 42 153-194 40-83 (183)
259 cd02991 UAS_ETEA UAS family, E 95.7 0.013 2.7E-07 53.3 4.3 94 151-252 15-112 (116)
260 cd02984 TRX_PICOT TRX domain, 95.7 0.048 1E-06 47.0 7.8 88 268-360 5-96 (97)
261 PF07912 ERp29_N: ERp29, N-ter 95.7 0.05 1.1E-06 49.4 7.9 63 304-366 52-121 (126)
262 KOG0911 Glutaredoxin-related p 95.7 0.044 9.6E-07 54.7 8.2 68 151-228 15-82 (227)
263 cd02957 Phd_like Phosducin (Ph 95.6 0.034 7.4E-07 49.9 6.8 59 279-341 25-87 (113)
264 cd02970 PRX_like2 Peroxiredoxi 95.6 0.019 4.2E-07 53.4 5.4 55 153-207 23-79 (149)
265 cd03072 PDI_b'_ERp44 PDIb' fam 95.6 0.12 2.6E-06 46.5 10.2 91 397-549 19-109 (111)
266 cd02947 TRX_family TRX family; 95.5 0.053 1.1E-06 45.1 7.4 78 279-360 11-92 (93)
267 cd02987 Phd_like_Phd Phosducin 95.4 0.062 1.3E-06 52.5 8.3 81 279-363 84-174 (175)
268 PF06110 DUF953: Eukaryotic pr 95.3 0.007 1.5E-07 55.2 1.2 75 152-226 18-99 (119)
269 PRK09437 bcp thioredoxin-depen 95.3 0.036 7.8E-07 52.4 6.1 56 152-207 29-86 (154)
270 cd03014 PRX_Atyp2cys Peroxired 95.2 0.034 7.3E-07 51.8 5.6 55 152-207 25-80 (143)
271 TIGR03143 AhpF_homolog putativ 95.2 0.042 9E-07 63.4 7.4 79 153-249 475-554 (555)
272 cd03018 PRX_AhpE_like Peroxire 95.1 0.032 7E-07 52.2 5.2 54 154-207 29-84 (149)
273 cd02951 SoxW SoxW family; SoxW 95.0 0.072 1.6E-06 48.5 6.9 43 320-362 74-117 (125)
274 PRK11200 grxA glutaredoxin 1; 95.0 0.027 6E-07 47.8 3.8 80 156-252 2-82 (85)
275 PRK10382 alkyl hydroperoxide r 95.0 0.11 2.3E-06 51.4 8.5 95 153-251 31-154 (187)
276 cd02968 SCO SCO (an acronym fo 95.0 0.037 8.1E-07 51.2 5.0 43 152-194 21-68 (142)
277 cd02986 DLP Dim1 family, Dim1- 94.9 0.12 2.7E-06 46.6 8.0 69 277-347 13-85 (114)
278 PLN00410 U5 snRNP protein, DIM 94.9 0.14 2.9E-06 48.3 8.6 91 268-362 14-118 (142)
279 cd02976 NrdH NrdH-redoxin (Nrd 94.9 0.034 7.3E-07 44.8 4.1 54 157-222 2-56 (73)
280 KOG3425 Uncharacterized conser 94.9 0.019 4.1E-07 51.6 2.5 80 144-225 13-104 (128)
281 PRK15317 alkyl hydroperoxide r 94.8 0.069 1.5E-06 61.1 7.7 83 152-252 115-197 (517)
282 cd02971 PRX_family Peroxiredox 94.6 0.066 1.4E-06 49.4 5.8 55 152-206 21-77 (140)
283 cd02962 TMX2 TMX2 family; comp 94.5 0.11 2.5E-06 49.5 7.1 71 268-341 38-119 (152)
284 KOG1672 ATP binding protein [P 94.5 0.025 5.5E-07 55.1 2.5 76 143-228 74-149 (211)
285 cd03073 PDI_b'_ERp72_ERp57 PDI 94.2 0.08 1.7E-06 47.7 5.2 98 140-252 3-110 (111)
286 cd03074 PDI_b'_Calsequestrin_C 94.2 0.42 9E-06 42.3 9.3 97 397-548 22-120 (120)
287 TIGR00411 redox_disulf_1 small 94.1 0.26 5.7E-06 40.8 7.8 64 292-362 17-80 (82)
288 PRK10877 protein disulfide iso 94.0 0.12 2.5E-06 52.9 6.6 87 152-252 106-230 (232)
289 cd03020 DsbA_DsbC_DsbG DsbA fa 93.9 0.073 1.6E-06 52.8 4.7 83 152-248 76-196 (197)
290 PF07449 HyaE: Hydrogenase-1 e 93.8 0.05 1.1E-06 48.6 3.0 81 137-227 10-93 (107)
291 cd02066 GRX_family Glutaredoxi 93.8 0.06 1.3E-06 43.0 3.2 53 157-221 2-55 (72)
292 cd02992 PDI_a_QSOX PDIa family 93.7 0.18 3.9E-06 45.5 6.4 63 279-341 20-89 (114)
293 PTZ00051 thioredoxin; Provisio 93.6 0.38 8.1E-06 41.4 8.1 82 268-357 11-96 (98)
294 cd03419 GRX_GRXh_1_2_like Glut 93.5 0.055 1.2E-06 45.1 2.5 58 157-226 2-61 (82)
295 cd02972 DsbA_family DsbA famil 93.4 0.11 2.3E-06 44.0 4.3 33 157-189 1-33 (98)
296 COG1076 DjlA DnaJ-domain-conta 93.3 0.045 9.8E-07 53.4 1.9 52 36-87 112-173 (174)
297 PF01216 Calsequestrin: Calseq 93.2 0.69 1.5E-05 49.2 10.6 66 306-375 90-155 (383)
298 PRK13190 putative peroxiredoxi 93.0 0.44 9.5E-06 47.6 8.5 91 156-252 31-153 (202)
299 PRK15000 peroxidase; Provision 92.9 0.53 1.1E-05 47.0 9.0 97 152-251 33-160 (200)
300 KOG2640 Thioredoxin [Function 92.8 0.08 1.7E-06 55.3 3.0 87 152-252 75-161 (319)
301 cd02988 Phd_like_VIAF Phosduci 92.8 0.45 9.8E-06 47.2 8.2 78 278-362 102-190 (192)
302 PTZ00253 tryparedoxin peroxida 92.6 0.64 1.4E-05 46.2 9.1 43 153-195 36-80 (199)
303 PF00462 Glutaredoxin: Glutare 92.2 0.083 1.8E-06 41.6 1.8 54 157-222 1-55 (60)
304 TIGR03140 AhpF alkyl hydropero 91.8 0.43 9.3E-06 54.6 7.7 83 152-252 116-198 (515)
305 PF03190 Thioredox_DsbH: Prote 91.7 0.11 2.4E-06 50.0 2.2 69 151-228 35-114 (163)
306 KOG0431 Auxilin-like protein a 91.5 0.34 7.4E-06 54.3 6.2 32 40-71 391-422 (453)
307 cd03023 DsbA_Com1_like DsbA fa 91.4 0.2 4.3E-06 46.6 3.7 31 152-182 4-34 (154)
308 TIGR01295 PedC_BrcD bacterioci 91.4 1 2.3E-05 41.1 8.3 81 278-361 23-121 (122)
309 cd03067 PDI_b_PDIR_N PDIb fami 91.4 0.82 1.8E-05 40.2 7.0 91 268-362 12-110 (112)
310 TIGR02190 GlrX-dom Glutaredoxi 91.2 0.25 5.4E-06 41.4 3.7 57 154-222 7-63 (79)
311 TIGR02183 GRXA Glutaredoxin, G 91.0 0.23 4.9E-06 42.4 3.4 79 157-252 2-81 (86)
312 PF14595 Thioredoxin_9: Thiore 90.9 0.077 1.7E-06 49.2 0.3 67 153-226 41-107 (129)
313 COG2143 Thioredoxin-related pr 90.7 0.64 1.4E-05 44.0 6.1 94 149-251 38-150 (182)
314 COG1076 DjlA DnaJ-domain-conta 90.1 0.13 2.8E-06 50.2 1.2 61 38-98 2-72 (174)
315 cd02958 UAS UAS family; UAS is 89.9 3.2 7E-05 37.0 10.1 86 277-362 16-109 (114)
316 cd03019 DsbA_DsbA DsbA family, 89.9 0.35 7.5E-06 46.5 4.0 38 152-189 14-51 (178)
317 cd03066 PDI_b_Calsequestrin_mi 89.8 1 2.3E-05 39.5 6.6 92 142-252 7-100 (102)
318 cd02952 TRP14_like Human TRX-r 89.6 1.7 3.6E-05 39.8 7.9 49 292-340 46-100 (119)
319 cd03069 PDI_b_ERp57 PDIb famil 89.5 0.78 1.7E-05 40.6 5.6 91 145-252 10-103 (104)
320 cd03071 PDI_b'_NRX PDIb' famil 89.3 4.2 9.1E-05 36.1 9.7 97 397-548 16-115 (116)
321 PRK10329 glutaredoxin-like pro 89.2 0.52 1.1E-05 39.8 4.1 74 157-252 3-76 (81)
322 KOG3414 Component of the U4/U6 88.8 0.64 1.4E-05 42.4 4.5 72 147-227 15-88 (142)
323 cd03016 PRX_1cys Peroxiredoxin 88.8 1.2 2.5E-05 44.5 7.0 41 155-195 28-69 (203)
324 PTZ00062 glutaredoxin; Provisi 88.7 6 0.00013 39.6 11.8 74 279-365 18-95 (204)
325 PRK15317 alkyl hydroperoxide r 88.4 11 0.00023 43.3 15.3 172 154-362 19-196 (517)
326 PF02114 Phosducin: Phosducin; 88.4 1.2 2.6E-05 46.5 6.9 69 293-365 165-239 (265)
327 PRK13191 putative peroxiredoxi 88.3 2.1 4.5E-05 43.2 8.4 41 155-195 36-77 (215)
328 TIGR03140 AhpF alkyl hydropero 87.3 15 0.00032 42.1 15.6 172 153-361 19-196 (515)
329 PTZ00137 2-Cys peroxiredoxin; 87.2 1.3 2.7E-05 46.2 6.2 43 153-195 98-142 (261)
330 TIGR02740 TraF-like TraF-like 86.6 3.3 7.2E-05 43.3 9.0 82 279-362 167-262 (271)
331 PF07449 HyaE: Hydrogenase-1 e 86.2 2.5 5.3E-05 37.9 6.6 69 268-341 19-93 (107)
332 PRK13599 putative peroxiredoxi 86.1 1.3 2.8E-05 44.7 5.5 42 155-196 31-73 (215)
333 PF03656 Pam16: Pam16; InterP 86.0 1.3 2.8E-05 40.9 4.9 53 38-91 59-111 (127)
334 PRK03147 thiol-disulfide oxido 86.0 3.3 7.3E-05 39.4 8.1 44 320-363 128-171 (173)
335 TIGR02194 GlrX_NrdH Glutaredox 86.0 0.87 1.9E-05 37.2 3.5 53 158-222 2-54 (72)
336 cd03027 GRX_DEP Glutaredoxin ( 85.9 1.1 2.4E-05 36.6 4.0 53 157-221 3-56 (73)
337 TIGR02181 GRX_bact Glutaredoxi 85.8 0.57 1.2E-05 38.8 2.3 52 158-221 2-54 (79)
338 PRK00293 dipZ thiol:disulfide 85.5 2.8 6E-05 48.7 8.5 62 300-362 503-568 (571)
339 cd03418 GRX_GRXb_1_3_like Glut 85.1 1.2 2.6E-05 36.3 3.9 53 157-221 2-56 (75)
340 cd03029 GRX_hybridPRX5 Glutare 84.0 1.3 2.9E-05 36.0 3.7 69 157-249 3-71 (72)
341 KOG1731 FAD-dependent sulfhydr 82.9 2.4 5.2E-05 48.0 6.2 55 287-341 70-127 (606)
342 KOG0908 Thioredoxin-like prote 81.8 6.3 0.00014 40.4 8.1 71 288-363 35-105 (288)
343 PRK10954 periplasmic protein d 81.1 1.3 2.8E-05 44.3 3.1 41 153-193 37-80 (207)
344 TIGR02189 GlrX-like_plant Glut 80.6 1.6 3.5E-05 38.3 3.2 56 157-226 10-69 (99)
345 smart00594 UAS UAS domain. 79.7 11 0.00024 34.2 8.5 50 311-360 67-121 (122)
346 KOG3170 Conserved phosducin-li 79.4 1.9 4.1E-05 42.5 3.4 103 137-252 92-200 (240)
347 PF13462 Thioredoxin_4: Thiore 78.5 1.4 3E-05 41.5 2.2 42 152-193 11-54 (162)
348 PRK10638 glutaredoxin 3; Provi 78.3 2.2 4.8E-05 35.8 3.2 54 157-222 4-58 (83)
349 KOG3171 Conserved phosducin-li 78.0 2.5 5.3E-05 42.1 3.7 85 133-228 135-223 (273)
350 PHA03050 glutaredoxin; Provisi 77.5 1.6 3.5E-05 39.1 2.2 56 157-221 15-74 (108)
351 PF13098 Thioredoxin_2: Thiore 76.7 3.5 7.5E-05 36.3 4.1 41 320-360 72-112 (112)
352 PRK13189 peroxiredoxin; Provis 76.0 3.8 8.3E-05 41.5 4.7 42 155-196 38-80 (222)
353 cd03011 TlpA_like_ScsD_MtbDsbE 75.2 15 0.00033 32.6 8.1 38 320-358 83-120 (123)
354 cd03028 GRX_PICOT_like Glutare 75.0 3.4 7.4E-05 35.4 3.5 50 163-226 21-71 (90)
355 COG2143 Thioredoxin-related pr 74.1 44 0.00096 32.0 10.7 39 320-358 105-143 (182)
356 KOG0914 Thioredoxin-like prote 73.8 5.9 0.00013 39.7 5.1 62 278-341 145-216 (265)
357 PF11009 DUF2847: Protein of u 73.5 14 0.0003 33.0 6.9 92 263-356 5-104 (105)
358 COG0695 GrxC Glutaredoxin and 72.9 4.9 0.00011 33.8 3.9 53 157-222 3-59 (80)
359 PF11009 DUF2847: Protein of u 72.6 1.2 2.7E-05 39.6 0.2 79 143-227 7-89 (105)
360 PRK14018 trifunctional thiored 71.0 15 0.00032 42.2 8.2 42 320-361 129-170 (521)
361 cd03009 TryX_like_TryX_NRX Try 70.0 13 0.00027 33.8 6.3 22 320-341 89-110 (131)
362 cd02973 TRX_GRX_like Thioredox 67.5 13 0.00029 29.3 5.2 41 293-336 18-58 (67)
363 cd03013 PRX5_like Peroxiredoxi 67.2 16 0.00034 34.8 6.5 54 154-207 30-87 (155)
364 TIGR00412 redox_disulf_2 small 66.6 22 0.00047 29.3 6.5 59 292-360 16-75 (76)
365 TIGR00365 monothiol glutaredox 65.5 7 0.00015 34.2 3.4 47 163-221 25-72 (97)
366 PF05768 DUF836: Glutaredoxin- 65.0 4.9 0.00011 33.7 2.3 80 157-250 2-81 (81)
367 PRK11657 dsbG disulfide isomer 65.0 12 0.00026 38.7 5.6 27 152-178 116-142 (251)
368 cd03026 AhpF_NTD_C TRX-GRX-lik 64.9 36 0.00079 29.1 7.7 70 278-355 12-85 (89)
369 PF11833 DUF3353: Protein of u 64.0 11 0.00025 37.4 4.9 38 46-88 1-38 (194)
370 PF13728 TraF: F plasmid trans 63.6 34 0.00074 34.5 8.4 65 292-358 138-212 (215)
371 cd02959 ERp19 Endoplasmic reti 62.8 9.2 0.0002 34.6 3.8 64 277-341 18-87 (117)
372 PF02966 DIM1: Mitosis protein 60.8 5.9 0.00013 36.6 2.1 63 151-223 18-81 (133)
373 PRK12759 bifunctional gluaredo 59.5 8.3 0.00018 42.9 3.4 54 157-222 4-66 (410)
374 cd02955 SSP411 TRX domain, SSP 59.3 65 0.0014 29.5 8.8 18 325-342 75-92 (124)
375 cd02966 TlpA_like_family TlpA- 57.3 44 0.00095 28.3 7.1 22 320-341 87-108 (116)
376 KOG0724 Zuotin and related mol 56.6 9.8 0.00021 40.9 3.3 52 49-100 4-62 (335)
377 PF13446 RPT: A repeated domai 55.9 11 0.00024 29.9 2.7 44 37-88 5-48 (62)
378 cd02964 TryX_like_family Trypa 55.7 29 0.00064 31.5 5.9 22 320-341 89-110 (132)
379 KOG3414 Component of the U4/U6 54.6 1.1E+02 0.0024 28.3 9.0 75 268-343 14-90 (142)
380 TIGR02738 TrbB type-F conjugat 54.6 63 0.0014 30.7 8.1 69 292-362 68-151 (153)
381 cd03068 PDI_b_ERp72 PDIb famil 54.2 18 0.00039 32.1 4.1 92 144-251 9-106 (107)
382 PRK10824 glutaredoxin-4; Provi 53.9 14 0.0003 33.6 3.3 28 163-196 28-55 (115)
383 COG3019 Predicted metal-bindin 53.1 24 0.00052 33.0 4.7 78 154-252 25-103 (149)
384 cd03010 TlpA_like_DsbE TlpA-li 52.5 37 0.00081 30.4 6.0 37 320-356 90-126 (127)
385 cd02991 UAS_ETEA UAS family, E 52.1 1.4E+02 0.003 27.0 9.5 44 318-361 64-110 (116)
386 PF13905 Thioredoxin_8: Thiore 50.0 71 0.0015 26.8 7.1 60 278-341 34-93 (95)
387 KOG3171 Conserved phosducin-li 47.4 73 0.0016 32.1 7.3 82 280-365 162-252 (273)
388 KOG2603 Oligosaccharyltransfer 47.3 1.4E+02 0.003 31.8 9.7 99 262-363 45-165 (331)
389 TIGR02739 TraF type-F conjugat 47.0 81 0.0018 32.8 8.1 66 292-359 168-243 (256)
390 PF00837 T4_deiodinase: Iodoth 46.2 46 0.001 34.1 5.9 52 135-186 81-135 (237)
391 PLN02919 haloacid dehalogenase 43.3 88 0.0019 39.3 9.1 85 278-363 420-535 (1057)
392 KOG1752 Glutaredoxin and relat 42.8 31 0.00067 30.8 3.7 56 157-222 16-73 (104)
393 PF13192 Thioredoxin_3: Thiore 42.8 1.8E+02 0.0038 23.8 8.1 37 319-361 39-76 (76)
394 TIGR00385 dsbE periplasmic pro 42.4 1.3E+02 0.0028 28.8 8.4 44 320-363 127-170 (173)
395 PF05957 DUF883: Bacterial pro 41.3 38 0.00082 29.3 4.0 40 589-629 54-93 (94)
396 PHA03049 IMV membrane protein; 39.4 38 0.00083 27.4 3.3 35 614-651 10-44 (68)
397 COG4232 Thiol:disulfide interc 38.5 45 0.00098 38.4 5.0 57 307-363 509-567 (569)
398 cd03070 PDI_b_ERp44 PDIb famil 36.8 2E+02 0.0044 25.0 7.7 68 278-352 17-85 (91)
399 COG1225 Bcp Peroxiredoxin [Pos 35.8 80 0.0017 30.3 5.5 56 152-207 29-86 (157)
400 PF03988 DUF347: Repeat of Unk 35.8 69 0.0015 25.0 4.2 37 598-635 19-55 (55)
401 PF12725 DUF3810: Protein of u 35.2 1.1E+02 0.0024 32.8 7.2 72 22-93 67-152 (318)
402 cd02967 mauD Methylamine utili 34.7 1E+02 0.0022 26.8 5.8 42 293-334 40-82 (114)
403 PF13743 Thioredoxin_5: Thiore 34.4 15 0.00033 35.7 0.4 28 159-186 2-29 (176)
404 PRK13703 conjugal pilus assemb 33.9 1.5E+02 0.0032 30.7 7.5 67 291-359 160-236 (248)
405 PF14687 DUF4460: Domain of un 33.2 63 0.0014 29.2 4.1 44 47-90 4-54 (112)
406 PF13462 Thioredoxin_4: Thiore 29.4 60 0.0013 30.1 3.6 36 201-251 127-162 (162)
407 KOG1672 ATP binding protein [P 29.4 78 0.0017 31.4 4.3 61 278-341 85-148 (211)
408 PHA02125 thioredoxin-like prot 28.3 1.4E+02 0.0029 24.3 5.1 18 318-335 34-51 (75)
409 PF13743 Thioredoxin_5: Thiore 27.0 39 0.00085 32.8 1.9 37 200-244 137-173 (176)
410 PF01102 Glycophorin_A: Glycop 27.0 55 0.0012 30.1 2.7 14 618-631 80-93 (122)
411 PRK13728 conjugal transfer pro 25.9 3.4E+02 0.0074 26.7 8.2 43 320-362 124-169 (181)
412 PRK15412 thiol:disulfide inter 25.6 1.2E+02 0.0025 29.6 5.0 42 321-362 133-174 (185)
413 PF15179 Myc_target_1: Myc tar 24.4 1E+02 0.0022 30.3 4.0 21 613-633 33-53 (197)
414 PF15102 TMEM154: TMEM154 prot 24.2 61 0.0013 30.7 2.5 14 633-646 87-100 (146)
415 PF09673 TrbC_Ftype: Type-F co 23.9 2.3E+02 0.005 25.4 6.1 45 170-225 36-80 (113)
416 PF06522 B12D: NADH-ubiquinone 23.5 55 0.0012 27.1 1.9 26 605-630 2-27 (73)
417 KOG3170 Conserved phosducin-li 23.3 4.8E+02 0.01 26.2 8.5 90 354-492 79-168 (240)
418 cd03023 DsbA_Com1_like DsbA fa 22.9 1.1E+02 0.0023 27.9 4.0 34 201-249 120-153 (154)
419 KOG2501 Thioredoxin, nucleored 22.4 1.9E+02 0.0041 27.8 5.5 36 307-342 92-127 (157)
420 COG5552 Uncharacterized conser 21.3 2.1E+02 0.0046 23.8 4.7 32 37-68 3-34 (88)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-35 Score=317.60 Aligned_cols=334 Identities=19% Similarity=0.273 Sum_probs=254.7
Q ss_pred cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcc
Q 006171 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (658)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~ 211 (658)
...|++||.+||+..|..+..+||+|||||||||++++|+|+++|+.|+.. +.+|+|||+++ ..+|.+|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~---- 96 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE---- 96 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc----
Confidence 346899999999999999999999999999999999999999999999874 48999999955 56999999
Q ss_pred cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC
Q 006171 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER 291 (658)
Q Consensus 212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~ 291 (658)
|+|||||++|++|.. ..+|+|+|++++|+.|++++ .+|....+.+.+.++.|+.+. ..+.+.+|.+....
T Consensus 97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~~~ 166 (493)
T KOG0190|consen 97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLESL 166 (493)
T ss_pred --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEecccccc
Confidence 889999999999974 58999999999999999998 578777776666578888752 23444466543222
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCc
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP 369 (658)
...+-..|...++.+.|++.. ..++.++++++. .+.+++++..+...+.|.|.++.+.|.+||..+++|++.
T Consensus 167 -~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~ 240 (493)
T KOG0190|consen 167 -AESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVT 240 (493)
T ss_pred -hHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccc
Confidence 233444555566777777432 456888888863 566999999888877788999999999999999999999
Q ss_pred cccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCC
Q 006171 370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNK 448 (658)
Q Consensus 370 ~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 448 (658)
.+|..+.....- ..- .+-++++.+ .....+.+++.++++++ .|++
T Consensus 241 ~ft~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~e~~~~~~~~vAk----------------------~f~~- 286 (493)
T KOG0190|consen 241 EFTVANNAKIYS------SFV-----KLGLDFFVFFKCNRFEELRKKFEEVAK----------------------KFKG- 286 (493)
T ss_pred eecccccceeec------ccc-----ccceeEEeccccccHHHHHHHHHHHHH----------------------hccc-
Confidence 999987543111 111 144566654 33367888999988888 7776
Q ss_pred cEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCC-eEEEEEeecCCccccceeccccCcccccccccccCccccc
Q 006171 449 RLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVP-RLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQL 527 (658)
Q Consensus 449 ~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p-~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~ 527 (658)
.++|+++|.+..++.++.|-..+. ..| +++++ +..+ -||. + +.++.
T Consensus 287 ~l~Fi~~d~e~~~~~~~~~Gl~~~------------~~~~~~v~~----~~~~--~Ky~------~---~~e~~------ 333 (493)
T KOG0190|consen 287 KLRFILIDPESFARVLEFFGLEEE------------QLPIRAVIL----NEDG--SKYP------L---EEEEL------ 333 (493)
T ss_pred ceEEEEEChHHhhHHHHhcCcccc------------cCCeeEEee----cccc--cccc------C---ccccc------
Confidence 599999999888888887733321 124 66665 5554 3555 2 43322
Q ss_pred hhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCCCC
Q 006171 528 VVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP 568 (658)
Q Consensus 528 ~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l~~ 568 (658)
+...|+.|+.+++. +..+..++++++|+=++
T Consensus 334 --------~~~~ie~f~~~~l~--Gk~~p~~kSqpiPe~~~ 364 (493)
T KOG0190|consen 334 --------DQENIESFVKDFLD--GKVKPHLKSQPIPEDND 364 (493)
T ss_pred --------cHHHHHHHHHHHhc--CccccccccCCCCcccc
Confidence 22469999999999 67777779999998776
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=267.32 Aligned_cols=279 Identities=19% Similarity=0.286 Sum_probs=195.0
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc---ceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA---NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~---~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~ 227 (658)
..+..|+|.||||||+||+++.|+|.++.-+|+..+ +||++||+ ....+|.+++ |+|||||++|+++.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence 467899999999999999999999999999998754 99999999 5566999999 99999999999986
Q ss_pred CCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCc
Q 006171 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYA 307 (658)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~ 307 (658)
. .+|.|+|+.++|++|+.+. ..|-+..+.... ..|......+.|.++||+.. ..|++.....+-.+..
T Consensus 112 a-----~dYRG~R~Kd~iieFAhR~--a~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtg---e~PL~d~fidAASe~~ 179 (468)
T KOG4277|consen 112 A-----IDYRGGREKDAIIEFAHRC--AAAIIEPINENQ--IEFEHLQARHQPFFVFFGTG---EGPLFDAFIDAASEKF 179 (468)
T ss_pred e-----eecCCCccHHHHHHHHHhc--ccceeeecChhH--HHHHHHhhccCceEEEEeCC---CCcHHHHHHHHhhhhe
Confidence 4 8999999999999999876 233333333222 23333334567999999832 2344433111111234
Q ss_pred eEEEEEecccccHhHHhhcC-CCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCccccCcchhhhcccccCC
Q 006171 308 SFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGY 386 (658)
Q Consensus 308 ~f~~v~~~~~~s~~l~~~f~-V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~ 386 (658)
..+.+... +++++-.++ .+..|++.+||+..- -+.++| +.++|.+||+..++|-+-..++....+.+-
T Consensus 180 ~~a~FfSa---seeVaPe~~~~kempaV~VFKDetf-~i~de~--dd~dLseWinRERf~~fLa~dgflL~EiG~----- 248 (468)
T KOG4277|consen 180 SVARFFSA---SEEVAPEENDAKEMPAVAVFKDETF-EIEDEG--DDEDLSEWINRERFPGFLAADGFLLAEIGA----- 248 (468)
T ss_pred eeeeeecc---ccccCCcccchhhccceEEEcccee-EEEecC--chhHHHHHHhHhhccchhhcccchHHHhCc-----
Confidence 44444322 233444433 345899999998532 122233 567899999999999888888887776433
Q ss_pred cCCCCCCcccEEEEEEcCC------ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccch
Q 006171 387 SRAGSDTTIWYCVILAGRL------SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQ 460 (658)
Q Consensus 387 ~~~~k~~~~~lcVi~~~~~------~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q 460 (658)
+|| ++++++.++ +.++.++.....++++.++.+- .+ ..+++|+|+||
T Consensus 249 --sGK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~p----------------df-h~dFQF~hlDG--- 301 (468)
T KOG4277|consen 249 --SGK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHP----------------DF-HNDFQFAHLDG--- 301 (468)
T ss_pred --CCc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhCh----------------hh-hhhceeeccch---
Confidence 465 888887653 3455666666666666444310 01 24699999999
Q ss_pred HHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceec
Q 006171 461 DRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE 506 (658)
Q Consensus 461 ~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~ 506 (658)
.++++.+++...+ .|+++|+ |.+. +.|-
T Consensus 302 nD~~nqilM~als------------~P~l~i~----Ntsn--qeYf 329 (468)
T KOG4277|consen 302 NDLANQILMAALS------------EPHLFIF----NTSN--QEYF 329 (468)
T ss_pred hHHHHHHHHHhhc------------CCeEEEE----ecCc--hhee
Confidence 7889988887652 4999999 8887 5554
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.95 E-value=6.6e-27 Score=260.38 Aligned_cols=332 Identities=16% Similarity=0.233 Sum_probs=234.7
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..||.++|++.+.++++++|.||||||++|+++.|.|.++|+.+++. +.++.|||+++ ..+|++++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~------ 72 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE---KDLAQKYG------ 72 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc---HHHHHhCC------
Confidence 3688999999999988899999999999999999999999999999764 58999999955 45999999
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCCCCC
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA 292 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~ 292 (658)
|.+|||+++|++|.. ....|.|.++.++|++|+.+.+ .|....+++.+.++.|+.. +.+.++ ++.+..+..
T Consensus 73 i~~~Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~---~~~~vi~~~~~~~~~~ 144 (462)
T TIGR01130 73 VSGYPTLKIFRNGED---SVSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLAD---DDVVVIGFFKDLDSEL 144 (462)
T ss_pred CccccEEEEEeCCcc---ceeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhc---CCcEEEEEECCCCcHH
Confidence 889999999998853 1478999999999999999882 2344446555557888865 234445 444333333
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCe--eeecCCC--ChHHHHHHHHhhccCCC
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQEL 368 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p--~~y~g~~--~~~~L~~fi~~~~~~~v 368 (658)
...+..+|..+++...+ ++... ...+.++++.. .+++++|+...... ..|.|+. +.+.|.+||+.+.+|++
T Consensus 145 ~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v 219 (462)
T TIGR01130 145 NDTFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLV 219 (462)
T ss_pred HHHHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCce
Confidence 44556677777655442 22211 24567777764 46667776543333 2467766 45799999999999999
Q ss_pred ccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CC-hhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcC
Q 006171 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LS-PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR 446 (658)
Q Consensus 369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~-~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 446 (658)
++++..+... .+.. + .++++++.. .+ ..++.+.+.++++++ .++
T Consensus 220 ~~~~~~~~~~-~~~~------~-----~~~~l~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~ 265 (462)
T TIGR01130 220 GEFTQETAAK-YFES------G-----PLVVLYYNVDESLDPFEELRNRFLEAAK----------------------KFR 265 (462)
T ss_pred EeeCCcchhh-HhCC------C-----CceeEEEEecCCchHHHHHHHHHHHHHH----------------------HCC
Confidence 9999887654 3311 0 244444432 22 224677778877777 676
Q ss_pred CCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCcccc
Q 006171 447 NKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQ 526 (658)
Q Consensus 447 ~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~ 526 (658)
+..+.|+|+|+.....+++.|.... .+.|.++|+ |.+.+ .+|. + +++
T Consensus 266 ~~~i~f~~~d~~~~~~~~~~~~~~~------------~~~P~~vi~----~~~~~-~~y~------~---~~~------- 312 (462)
T TIGR01130 266 GKFVNFAVADEEDFGRELEYFGLKA------------EKFPAVAIQ----DLEGN-KKYP------M---DQE------- 312 (462)
T ss_pred CCeEEEEEecHHHhHHHHHHcCCCc------------cCCceEEEE----eCCcc-cccC------C---CcC-------
Confidence 6579999999988888888773221 246999998 55431 2232 1 211
Q ss_pred chhccCCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCC
Q 006171 527 LVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL 566 (658)
Q Consensus 527 ~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l 566 (658)
..+.+.|.+||.+++. +...+.+.++++|+-
T Consensus 313 -------~~~~~~i~~fi~~~~~--g~~~~~~~se~~p~~ 343 (462)
T TIGR01130 313 -------EFSSENLEAFVKDFLD--GKLKPYLKSEPIPED 343 (462)
T ss_pred -------CCCHHHHHHHHHHHhc--CCCCeeeccCCCCcc
Confidence 1255899999999998 566666678888764
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.94 E-value=4e-25 Score=247.84 Aligned_cols=317 Identities=15% Similarity=0.222 Sum_probs=219.6
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..|+.++|+..+.+++.+||.||||||+||++++|+|+++|+.++. .+.++.|||+++ ..+|++++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~---~~l~~~~~------ 103 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE---MELAQEFG------ 103 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC---HHHHHhcC------
Confidence 468899999999998888999999999999999999999999998864 358999999955 45999999
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCCCCC
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA 292 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~~~~ 292 (658)
|++|||+++|.+|.. ..|.|.+++++|++|+.+.. .|....+++.+....+.. ...+.++ .+.+..+..
T Consensus 104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 173 (477)
T PTZ00102 104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKLT--GPAVTEVESASEIKLIAK---KIFVAFYGEYTSKDSEL 173 (477)
T ss_pred CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHhh--CCCceeecCHHHHHHhhc---cCcEEEEEEeccCCcHH
Confidence 889999999999864 48999999999999999873 455555555433444332 2223333 444333222
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCcccc
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLR 372 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lt 372 (658)
...+..+|..+++...|..+. +. ..+.+++++..+.... +.+..+.++|.+||+.+.+|++.+++
T Consensus 174 ~~~f~~~a~~~~~~~~F~~~~--~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~fI~~~~~P~~~~~~ 238 (477)
T PTZ00102 174 YKKFEEVADKHREHAKFFVKK--HE------------GKNKIYVLHKDEEGVE-LFMGKTKEELEEFVSTESFPLFAEIN 238 (477)
T ss_pred HHHHHHHHHhccccceEEEEc--CC------------CCCcEEEEecCCCCcc-cCCCCCHHHHHHHHHHcCCCceeecC
Confidence 334455788887776665432 11 2467888887655443 43445889999999999999999999
Q ss_pred CcchhhhcccccCCcCCCCCCcccEEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEE
Q 006171 373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTF 452 (658)
Q Consensus 373 s~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F 452 (658)
..+.....- .+ ..++++....++.+...+.++++|+ +++++ +.|
T Consensus 239 ~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~A~----------------------~~~~~-~~f 282 (477)
T PTZ00102 239 AENYRRYIS-------SG------KDLVWFCGTTEDYDKYKSVVRKVAR----------------------KLREK-YAF 282 (477)
T ss_pred ccchHHHhc-------CC------ccEEEEecCHHHHHHHHHHHHHHHH----------------------hccCc-eEE
Confidence 998754211 12 2233333333455667788888887 66554 899
Q ss_pred EEEeccchHH-HHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhcc
Q 006171 453 AWLDGEAQDR-YCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRY 531 (658)
Q Consensus 453 ~wvd~~~q~~-~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~ 531 (658)
+|+|+..... +++.|.. ...|.++|. +... ||. + +++ .
T Consensus 283 ~~vd~~~~~~~~~~~~gi--------------~~~P~~~i~----~~~~---~y~------~---~~~-~---------- 321 (477)
T PTZ00102 283 VWLDTEQFGSHAKEHLLI--------------EEFPGLAYQ----SPAG---RYL------L---PPA-K---------- 321 (477)
T ss_pred EEEechhcchhHHHhcCc--------------ccCceEEEE----cCCc---ccC------C---Ccc-c----------
Confidence 9999976554 5555522 134888776 3222 222 1 211 0
Q ss_pred CCCCChhHHHHHHHHHhhcCCCCCCCcccCCCCCC
Q 006171 532 NGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL 566 (658)
Q Consensus 532 ~~~~~~~~i~~~i~~~~~~g~~~~l~~~~~~~p~l 566 (658)
.+..+.+.|..|+.+++. +.....+.++++|+-
T Consensus 322 ~~~~~~~~l~~Fv~~~~~--gk~~~~~~se~~p~~ 354 (477)
T PTZ00102 322 ESFDSVEALIEFFKDVEA--GKVEKSIKSEPIPEE 354 (477)
T ss_pred cccCCHHHHHHHHHHHhC--CCCCcccccCCCCCC
Confidence 011256899999999998 566666677777764
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-24 Score=223.47 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=105.4
Q ss_pred CCccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhhhhh-h
Q 006171 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL-E 109 (658)
Q Consensus 34 ~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~~~~-~ 109 (658)
-..+|||+||||+++|+.+|||+||||||++||||+|| .++++|++|+.||||||||++|+.||+||+++..+.. .
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 34789999999999999999999999999999999998 4678899999999999999999999999998876431 1
Q ss_pred hhccc--cCccccccccCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccc
Q 006171 110 KVREQ--YGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIAN 187 (658)
Q Consensus 110 ~~~~~--~~~~~f~~~~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~ 187 (658)
.+++. ++.+.++..+||+..+. ..+... .....|++.++.-.|.||-...+.|+...+-.....
T Consensus 93 ~~~g~~~~~~f~~~f~dfg~~~~g-------~~~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~- 158 (336)
T KOG0713|consen 93 GEGGGGGNDIFSAFFGDFGVTVGG-------NPLEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA- 158 (336)
T ss_pred cccCCcccchHHHhhcccccccCC-------CcccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceeec-
Confidence 11121 34444444445443332 011111 345567777888889999888888877765443332
Q ss_pred eeeeecc
Q 006171 188 TGMVELG 194 (658)
Q Consensus 188 vg~Vdc~ 194 (658)
.++.+|.
T Consensus 159 ~g~~~~~ 165 (336)
T KOG0713|consen 159 PGTRKCN 165 (336)
T ss_pred CcccccC
Confidence 3344443
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=1.7e-21 Score=175.93 Aligned_cols=107 Identities=8% Similarity=0.031 Sum_probs=93.4
Q ss_pred CCCCCCCCCcceEEEecCCCCCcc---ccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHH
Q 006171 126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL 202 (658)
Q Consensus 126 gf~~~~~~~~~~V~~Lt~~nF~~~---v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~L 202 (658)
|||++. ..|++||.+||++. +.+++++||+||||||+||+.+.|.|+++|+.+++.+.|++|||+++. .+
T Consensus 3 ~~~~~~----~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~---~l 75 (113)
T cd03006 3 PFFSQR----SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ---GK 75 (113)
T ss_pred CccCCC----CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh---HH
Confidence 455543 36899999999987 478999999999999999999999999999999988899999999554 48
Q ss_pred H-hhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 203 c-~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
| ++++ |++||||++|++|.. ...|.|.++.+.|+.|+
T Consensus 76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 8 5788 889999999998864 57899999999999884
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.84 E-value=8e-20 Score=183.80 Aligned_cols=214 Identities=15% Similarity=0.229 Sum_probs=152.0
Q ss_pred ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc-----ccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-----IANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g-----~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
||.+|++..+++.+.++|.|||+||..++.+.|+|+++|..++. .+..|.|||+ .+..|+.+|. |+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 46789999999999999999999999999999999999998863 4478999999 6667999998 99
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhc-CCCcEEEEEEeCCCCCCcH
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP 294 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~-~~~~v~vl~f~~~~~~~~~ 294 (658)
.|||+++|++|.. -..+|.|.|++++|.+|++++.. -| +....+ ++++-+.. +.....+.+|.++......
T Consensus 72 KyPTlKvfrnG~~---~~rEYRg~RsVeaL~efi~kq~s-~~-i~Ef~s---l~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEM---MKREYRGQRSVEALIEFIEKQLS-DP-INEFES---LDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccch---hhhhhccchhHHHHHHHHHHHhc-cH-HHHHHh---HHHHHhhhccccceEEEEeccCCCchHH
Confidence 9999999999975 23699999999999999999833 22 111111 22222222 2334556677644322333
Q ss_pred HHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee-eecCCC-ChHHHHHHHHhhccCCCcccc
Q 006171 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSF-NNSRLSEVMEQNKLQELPQLR 372 (658)
Q Consensus 295 ~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~-~y~g~~-~~~~L~~fi~~~~~~~vP~lt 372 (658)
.++.+|.-+++...|..- .++. ...-.-.+.+ +++|.++...+. .|.|.+ +...++.||..--.|+|-++|
T Consensus 144 ~~~kva~~lr~dc~f~V~-~gD~-----~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLVG-FGDL-----LKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHhhccEEEee-cccc-----ccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 456677778877765432 2221 1111111222 556655444442 589998 578899999999999999999
Q ss_pred Ccchhh
Q 006171 373 SVTSME 378 (658)
Q Consensus 373 s~~~~~ 378 (658)
-+|.-+
T Consensus 217 FeN~EE 222 (375)
T KOG0912|consen 217 FENAEE 222 (375)
T ss_pred hccHHH
Confidence 999765
No 8
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.6e-21 Score=199.84 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=66.1
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
..|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||||||||++|+.||+||..+..
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 579999999999999999999999999999999998 3778899999999999999999999999998854
No 9
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.81 E-value=6.2e-18 Score=173.75 Aligned_cols=329 Identities=16% Similarity=0.239 Sum_probs=206.5
Q ss_pred cCCCCCCCCCCcceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHH-------HHHHHHhhccc-ceeeeeccc
Q 006171 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 124 ~fgf~~~~~~~~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w-------~~~A~~l~g~~-~vg~Vdc~e 195 (658)
+||-|+|.+ .|+.||..||++++...+...|.||.|-- .-+.....| +=+|+.|+..+ +||.||..
T Consensus 26 efP~YDGkD----RVi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~- 99 (383)
T PF01216_consen 26 EFPEYDGKD----RVIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK- 99 (383)
T ss_dssp SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT-
T ss_pred CCccCCCcc----ceEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH-
Confidence 466777752 57999999999999889999999999874 333333333 22355666655 99999999
Q ss_pred chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhc
Q 006171 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT 275 (658)
Q Consensus 196 ~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~ 275 (658)
....||+++| +..-++|.+|+.|.. ++|.|.|+++-|+.|+...+. - ++.+|+....+..|..-.
T Consensus 100 --Kd~klAKKLg------v~E~~SiyVfkd~~~-----IEydG~~saDtLVeFl~dl~e-d-PVeiIn~~~e~~~Fe~ie 164 (383)
T PF01216_consen 100 --KDAKLAKKLG------VEEEGSIYVFKDGEV-----IEYDGERSADTLVEFLLDLLE-D-PVEIINNKHELKAFERIE 164 (383)
T ss_dssp --TTHHHHHHHT--------STTEEEEEETTEE-----EEE-S--SHHHHHHHHHHHHS-S-SEEEE-SHHHHHHHHH--
T ss_pred --HHHHHHHhcC------ccccCcEEEEECCcE-----EEecCccCHHHHHHHHHHhcc-c-chhhhcChhhhhhhhhcc
Confidence 5556999999 889999999999975 999999999999999999843 2 344566655466665533
Q ss_pred CCCcEEEEE-EeCCCCCCcHHH---HHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-
Q 006171 276 GPHKVKVIF-FSKTGERASPFV---RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS- 350 (658)
Q Consensus 276 ~~~~v~vl~-f~~~~~~~~~~~---~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~- 350 (658)
..+++|. |.+.. +..+ ..+|..|..++.|..+. .+.++++++++ .-.|-+|.++..+|+...|.
T Consensus 165 --d~~klIGyFk~~~---s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p 233 (383)
T PF01216_consen 165 --DDIKLIGYFKSED---SEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKP 233 (383)
T ss_dssp --SS-EEEEE-SSTT---SHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS
T ss_pred --cceeEEEEeCCCC---cHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCC
Confidence 2477775 54322 3333 44888999999887764 45699999996 77899999999999988665
Q ss_pred CChHHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcC-CChhHHHHHHHHHHHHHhhcccccc
Q 006171 351 FNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDES 429 (658)
Q Consensus 351 ~~~~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~ 429 (658)
.+...|.+||+.|+-|++-+|+..++++.=-+. .....++++.. .+++--++.+.|+++|+
T Consensus 234 ~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd----------~~g~hIvaFaee~dpdG~efleilk~va~-------- 295 (383)
T PF01216_consen 234 YTEEELVEFIEEHKRPTLRKLRPEDMFETWEDD----------IDGIHIVAFAEEEDPDGFEFLEILKQVAR-------- 295 (383)
T ss_dssp --HHHHHHHHHHT-S-SEEE--GGGHHHHHHSS----------SSSEEEEEE--TTSHHHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHhchhHhhhCChhhhhhhhccc----------CCCceEEEEecCCCCchHHHHHHHHHHHH--------
Confidence 467889999999999999999999988732221 11244566665 45666677788888888
Q ss_pred ccccccCCchHHHHhcCC-CcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccc
Q 006171 430 NAADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERK 508 (658)
Q Consensus 430 ~~~~~~~~~~~~A~~~~~-~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~ 508 (658)
.+.. ..++++|||-+.-+=.+.+.-...+. +.. .|.|=|+ |.+- ...-
T Consensus 296 --------------~nt~np~LsivwIDPD~fPllv~yWE~tF~I--------dl~-~PqIGvV----nvtd--adsv-- 344 (383)
T PF01216_consen 296 --------------DNTDNPDLSIVWIDPDDFPLLVPYWEKTFGI--------DLS-RPQIGVV----NVTD--ADSV-- 344 (383)
T ss_dssp --------------HCTT-TT--EEEE-GGG-HHHHHHHHHHHTT---------TT-S-EEEEE----ETTT--SEEE--
T ss_pred --------------hcCcCCceeEEEECCCCCchhHHHHHhhcCc--------ccc-CCceeEE----eccc--cccc--
Confidence 3222 35999999987665555544222222 332 3999999 7665 2333
Q ss_pred cCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171 509 PRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 549 (658)
Q Consensus 509 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 549 (658)
| ++..+.++ .+ +.++++.||.++++
T Consensus 345 -W--~dm~d~~d----------~p---t~~~LedWieDVls 369 (383)
T PF01216_consen 345 -W--MDMDDDDD----------LP---TAEELEDWIEDVLS 369 (383)
T ss_dssp -E--C-STTTSS----------------HHHHHHHHHHHHC
T ss_pred -h--hccCCccc----------CC---cHHHHHHHHHHHhc
Confidence 7 41122111 12 56899999999998
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.81 E-value=2.7e-20 Score=164.49 Aligned_cols=100 Identities=23% Similarity=0.519 Sum_probs=90.6
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
.|+.||.++|+..+.++++|+|.||||||++|+++.|.|+++|+.+++.+.+++|||++++ .+|++++ |++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~ 72 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR---MLCRSQG------VNS 72 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH---HHHHHcC------CCc
Confidence 3688999999999977799999999999999999999999999999988899999999554 5999998 889
Q ss_pred eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
|||+++|++|.. ...|.|.++.++|++|+
T Consensus 73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 73 YPSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 999999998854 57899999999999884
No 11
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.6e-19 Score=191.92 Aligned_cols=211 Identities=17% Similarity=0.335 Sum_probs=156.3
Q ss_pred EEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 139 NVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 139 ~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
..++..+|...+ ....+|+|+||+|||+||+++.|+|+++++.|++.+.+|.|||+++ ..+|++++ |++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~---~~~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH---KDLCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh---HHHHHhcC------CccC
Confidence 445566666665 7899999999999999999999999999999999889999999955 45999999 8899
Q ss_pred eEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCC-----c-ceeeccchhhhhhhhhcCCCcEEEEEEeC---C
Q 006171 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (658)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP-----~-~~~it~~~~~~~Fl~~~~~~~v~vl~f~~---~ 288 (658)
|||++|.++ . .+.+|.|.++++.+.+|+.+.+.... . +..++..+ ...+... .++.+.|.||.+ +
T Consensus 103 Ptl~~f~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPG-K---KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCC-C---ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence 999999998 2 36899999999999999988643221 1 11122222 2222221 234455666543 3
Q ss_pred CCCCcHHHHHHHHhhc--cCceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhcc
Q 006171 289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (658)
Q Consensus 289 ~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~ 365 (658)
+....+.+..++..++ ..+.++.+ +++ ...++.+++|..+||+.+|+++...+..|.|..+.+.+..|++...-
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~---d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKI---DATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEee---ccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence 4456688888887764 34444444 332 46799999999999999999876623346788899999999988655
Q ss_pred CC
Q 006171 366 QE 367 (658)
Q Consensus 366 ~~ 367 (658)
..
T Consensus 254 ~~ 255 (383)
T KOG0191|consen 254 RN 255 (383)
T ss_pred CC
Confidence 53
No 12
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.79 E-value=5.1e-20 Score=165.80 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=87.0
Q ss_pred EEEecCCCCCccccCCCcEEEEEec--cCCC---CCCCChHHHHHHHHHhhcccceeeeecccc--hhhhHHHhhCCCCc
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ 210 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYa--pwC~---~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--~~~~~Lc~k~~i~k 210 (658)
+++||..||+++|.+++.+||+||| |||+ ||++|+|+|.++|.. +.||+|||++. ..+..||++|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6899999999999999999999999 9999 888888888887754 67999999521 12356999999
Q ss_pred cccee--eeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHHHHh
Q 006171 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (658)
Q Consensus 211 ~f~V~--~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv~k~ 252 (658)
|+ +||||++|++|.. ..+..|+|+ |++++|++|++++
T Consensus 76 ---I~~~gyPTl~lF~~g~~--~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDF--ENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCc--CCCccCCCCcccHHHHHHHHHhc
Confidence 88 9999999999842 134789997 9999999999875
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.77 E-value=2.9e-19 Score=158.64 Aligned_cols=101 Identities=21% Similarity=0.451 Sum_probs=89.8
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.|..||.++|++.+ +++++++|.|||+||++|+++.|.|+++++++++.+.+++|||+++ ..+|++++ |+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~------i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY---ESLCQQAN------IR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch---HHHHHHcC------CC
Confidence 46789999999988 6678999999999999999999999999999988889999999954 45999998 88
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCC-HhHHHHHH
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs-~~~Lv~fv 249 (658)
++||+++|.+|+. ....|.|.++ .++|.+|+
T Consensus 73 ~~Pt~~~~~~g~~---~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNAS---KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCC---CceEccCCCCCHHHHHhhC
Confidence 9999999999843 3578999987 99999884
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=3.3e-19 Score=159.60 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=89.5
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc------ccceeeeecccchhhhHHHhhCCCCc
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g------~~~vg~Vdc~e~~~~~~Lc~k~~i~k 210 (658)
.|++||.++|+..+.++++++|.||||||++|+++.|.|+++|+.+++ .+.+++|||++++ .+|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCC---
Confidence 578999999999888888999999999999999999999999998753 3589999999554 5999999
Q ss_pred ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
|++|||+++|++|.. ....|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~---~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMM---MKREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence 889999999999863 247899999999999985
No 15
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.5e-19 Score=185.54 Aligned_cols=70 Identities=34% Similarity=0.583 Sum_probs=67.3
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
.+.+|+||||+++||.+|||+|||+|+++||||||+.+.++|++|.+|||+||||++|+.||+||+++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 4689999999999999999999999999999999999999999999999999999999999999988864
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.73 E-value=1.8e-18 Score=152.10 Aligned_cols=102 Identities=17% Similarity=0.373 Sum_probs=93.0
Q ss_pred EEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
|..+|.++|++.+. ++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++ .+|++++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK---ELCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH---HHHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc---hhhhccC------CCC
Confidence 46899999999995 4999999999999999999999999999999987799999999554 5999999 889
Q ss_pred eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+||+++|.+|.. ...|.|.++.++|.+|++++
T Consensus 72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence 999999999975 46899999999999999874
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.73 E-value=4.8e-18 Score=151.75 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=90.9
Q ss_pred EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
|.+|+.++|+..| +++++++|.||||||++|+++.|.|+++|+.+.+...++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6789999999998 66788999999999999999999999999999887899999999621 345999998 889
Q ss_pred eeEEEEcCCCCCC-CCCcccccCCCCHhHHHHHH
Q 006171 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 217 yPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+||+++|.+|... ......|.|.++.++|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999988610 01357899999999999997
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.72 E-value=6e-18 Score=149.34 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=86.0
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccccee
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.|++||.++|++.+.+. |+|+||||||++|+++.|.|+++++.+++. +.+++|||++++ .+|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~---~~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP---GLSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH---hHHHHcC------Cc
Confidence 47899999999887543 899999999999999999999999988754 689999999554 4899998 88
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~ 250 (658)
++||+++|++|.. ..|.|.++.++|++|+.
T Consensus 71 ~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGVF-----RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCCE-----EEecCCCCHHHHHHHHh
Confidence 9999999988842 67999999999999985
No 19
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.8e-17 Score=179.96 Aligned_cols=223 Identities=14% Similarity=0.202 Sum_probs=143.0
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCccc
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
.|++|+.++|+..| .+.+.+||+||++|||||++++|+|+++|+.+++ ++.|++|||.+..+ ..||++++
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCRef~----- 113 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCREFS----- 113 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHhhcC-----
Confidence 58999999999999 6677999999999999999999999999999975 45999999996543 34999999
Q ss_pred ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhhc---------cCCcceeeccchhhhhhhhh-cCCCcEEE
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAK-TGPHKVKV 282 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~---------~lP~~~~it~~~~~~~Fl~~-~~~~~v~v 282 (658)
|++||||++|+++.........+.|+-...++.+.+.+.+. ..|....+++.+.+...-++ .+...-+.
T Consensus 114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvA 192 (606)
T KOG1731|consen 114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVA 192 (606)
T ss_pred -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeE
Confidence 88999999999875432334667787777788777765432 34433334332222222111 11122345
Q ss_pred EEEeCCCCCCcHHHHHHHHhhc--cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh----HHH
Q 006171 283 IFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN----SRL 356 (658)
Q Consensus 283 l~f~~~~~~~~~~~~~~A~~~~--~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~----~~L 356 (658)
++|.... ..+-...+..+- ..+....+. +.....+.+ ++...+|..++|+.+...++. ....+. +.|
T Consensus 193 iv~e~~~---s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~-~~~~s~~~y~~~I 265 (606)
T KOG1731|consen 193 IVFETEP---SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLW-PSSSSRSAYVKKI 265 (606)
T ss_pred EEEecCC---cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccc-cccccHHHHHHHH
Confidence 5664322 222233222222 233333332 332334455 777889999999998877653 222233 556
Q ss_pred HHHHHhh---ccCCCccccC
Q 006171 357 SEVMEQN---KLQELPQLRS 373 (658)
Q Consensus 357 ~~fi~~~---~~~~vP~lts 373 (658)
.+++-.. ..|+++..+.
T Consensus 266 ~~~lg~~~~a~~pt~~p~~~ 285 (606)
T KOG1731|consen 266 DDLLGDKNEASGPTLHPITA 285 (606)
T ss_pred HHHhcCccccCCCCcCcccc
Confidence 6665443 4455655553
No 20
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.71 E-value=2e-17 Score=150.59 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=87.6
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCC--CC--CChHHHHHHHHHh--hcccceeeeecccchhhhHHHhhCCCC
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYL--CG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIG 209 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~--Ck--~l~P~w~~~A~~l--~g~~~vg~Vdc~e~~~~~~Lc~k~~i~ 209 (658)
.|..||.+||++.| +++.++++.|+++||++ |+ .++|...++|.++ ++.++|++|||++++ .||++|+
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~-- 84 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLG-- 84 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcC--
Confidence 57899999999999 56678888888888864 99 7888888888777 666799999999554 5999999
Q ss_pred cccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|+++|||++|++|.. ..|.|.++.+.|++|+.+.
T Consensus 85 ----I~~iPTl~lfk~G~~-----v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 ----LDEEDSIYVFKDDEV-----IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ----CccccEEEEEECCEE-----EEeeCCCCHHHHHHHHHHH
Confidence 889999999999964 4599999999999999865
No 21
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.69 E-value=1.4e-17 Score=149.63 Aligned_cols=102 Identities=14% Similarity=0.316 Sum_probs=87.4
Q ss_pred eEEEecCCCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhh-CCCCcc
Q 006171 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI 211 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k-~~i~k~ 211 (658)
.|.+++.++|+.++. +++++||.||+|||+||+++.|.|+++|+.+++. ..+++|||+.+ ...+|.+ ++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~---- 75 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ---- 75 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence 478999999999883 5789999999999999999999999999999875 58999999952 1247764 77
Q ss_pred cceeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHH
Q 006171 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (658)
Q Consensus 212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv 249 (658)
|+++||+++|.+|.. ....|.|. |+.++|+.|+
T Consensus 76 --v~~~Pti~~f~~~~~---~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 --LKSFPTILFFPKNSR---QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CCcCCEEEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence 889999999998764 35789995 9999999985
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=3.1e-17 Score=144.75 Aligned_cols=100 Identities=23% Similarity=0.440 Sum_probs=89.5
Q ss_pred EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
|..++.++|++.+ +.+.+++|.||+|||++|+++.|.|.++++.+.+...++.+||+++. .+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ---SLAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH---HHHHHCC------CCc
Confidence 6789999999988 56677999999999999999999999999999888899999999554 5899998 889
Q ss_pred eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+||+++|.+|.. ....|.|.++.++|++|+
T Consensus 73 ~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKN---SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCc---ceeecCCCCCHHHHHHHh
Confidence 999999998843 467899999999999997
No 23
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.68 E-value=4.3e-17 Score=143.86 Aligned_cols=100 Identities=18% Similarity=0.388 Sum_probs=87.4
Q ss_pred EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
|..||.++|++.+ +++++++|.||+|||++|+++.|.|+++++.+++ .+.+++|||+++. +|.+++ +
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND----VPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh----hhhhcc------C
Confidence 6789999999998 5668999999999999999999999999999987 3589999999552 677777 7
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
.++||+++|++|.. .....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK--SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence 89999999999873 2357899999999999985
No 24
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=2e-17 Score=179.09 Aligned_cols=69 Identities=28% Similarity=0.423 Sum_probs=64.0
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++||.+|||+|||+||++||||+|+. +.++|++|++||++|+||++|+.||+||+.+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 4699999999999999999999999999999999862 56789999999999999999999999998753
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.67 E-value=4e-17 Score=143.81 Aligned_cols=98 Identities=17% Similarity=0.413 Sum_probs=86.2
Q ss_pred EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
|+.||.++|+..+.++ +++|.|||+||++|+.+.|.|+++++.+++ .+.+++|||+.+. .+|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcC------C
Confidence 5789999999999654 599999999999999999999999999987 5699999999544 5899998 8
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
.++||+++|++|.. ...|.|.++.++|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 89999999988854 46899999999999884
No 26
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4e-17 Score=176.82 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.3
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 469999999999999999999999999999999986 467889999999999999999999999998753
No 27
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.7e-17 Score=177.09 Aligned_cols=104 Identities=15% Similarity=0.338 Sum_probs=91.1
Q ss_pred ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--cceeeeecccchhhhHHHhhCCCCccc
Q 006171 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
..|.+|..+||+..+ +..+-+||+|||||||||++++|+|+++|+.+++. +.||++|.+.|.. ....
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~----- 435 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK----- 435 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence 358999999999999 78999999999999999999999999999999885 4899999996542 1123
Q ss_pred ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|.+||||++|+.|.+ ..+..|+|+|+.+++..|+.+.
T Consensus 436 -~~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 436 -VDGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -ccccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence 779999999999986 4678999999999999998776
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.67 E-value=5.1e-17 Score=146.47 Aligned_cols=100 Identities=21% Similarity=0.355 Sum_probs=86.4
Q ss_pred EEecCCCCCccc-c--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccce
Q 006171 139 NVVTSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 139 ~~Lt~~nF~~~v-~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
..+|.++|++.+ . .+++|+|.||||||++|+.+.|.|+++++++++. +.+++|||+.+ ..+|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~---~~l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE---RRLARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc---HHHHHHcC------C
Confidence 567888998655 3 6799999999999999999999999999999874 68999999954 45899999 8
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
+++||+++|++|.. ...+.|.++.+.|++|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 89999999998854 4566899999999999865
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.65 E-value=5.6e-17 Score=163.17 Aligned_cols=104 Identities=21% Similarity=0.448 Sum_probs=91.3
Q ss_pred ceEEEecCCCCCcccc-----CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCc
Q 006171 136 HAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ 210 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v~-----~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k 210 (658)
+.|++||.+||++.+. .+++|+|+||||||+||+++.|.|+++|+++++.+++++|||+++ ..+|++++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~---~~l~~~~~--- 103 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA---LNLAKRFA--- 103 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc---HHHHHHcC---
Confidence 4689999999999883 258999999999999999999999999999998889999999955 45999999
Q ss_pred ccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|++|||+++|.+|.. ...+.|.++.++|.+|+.+.
T Consensus 104 ---I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 ---IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred ---CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence 889999999998854 33446889999999999776
No 30
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.63 E-value=1.4e-16 Score=174.30 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=64.1
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 579999999999999999999999999999999986 46899999999999999999999999998753
No 31
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-16 Score=146.41 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=93.9
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.+..++..+|++.| +++.|++|+|||+|||+|+.+.|..++++.+++|.+++++||.+++ .+|+.+|+ |.
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~---~ela~~Y~------I~ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH---PELAEDYE------IS 114 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc---cchHhhcc------ee
Confidence 45778889999988 8999999999999999999999999999999999999999999955 45999999 89
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
.+||+++|++|.+ ...+.|..+.+.|.+|+.+.
T Consensus 115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence 9999999999976 35778999999999999887
No 32
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2e-16 Score=172.53 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=62.8
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~ 102 (658)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 4699999999999999999999999999999999873 568899999999999999999999999864
No 33
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.4e-16 Score=170.96 Aligned_cols=69 Identities=32% Similarity=0.534 Sum_probs=64.0
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 369999999999999999999999999999999986 356789999999999999999999999998764
No 34
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.62 E-value=6.8e-16 Score=136.53 Aligned_cols=84 Identities=13% Similarity=0.275 Sum_probs=74.4
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~ 229 (658)
..+++++|.|||+||++|+.+.|.|+++++.+.+ ..+++||++ +++ .+|++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcC------CeecCEEEEEcCC-c-
Confidence 3689999999999999999999999999999975 578889987 454 4899998 8999999999988 3
Q ss_pred CCCcccccCCCCHhHHHHHH
Q 006171 230 SDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 230 ~~~~~~Y~G~rs~~~Lv~fv 249 (658)
...|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 47899999999999985
No 35
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=3.1e-16 Score=169.95 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=64.1
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 469999999999999999999999999999999986 466789999999999999999999999998753
No 36
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.61 E-value=5.6e-16 Score=135.32 Aligned_cols=93 Identities=14% Similarity=0.270 Sum_probs=81.3
Q ss_pred CCCCccc-cC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171 144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 144 ~nF~~~v-~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++|++.| ++ +++++|.||||||++|+++.|.|+++++.+.+...+++|||+++ ..+|++++ |.++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~------i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ---PQIAQQFG------VQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC---HHHHHHcC------CCCCCEEE
Confidence 4677778 44 68999999999999999999999999999988778999999954 45999999 88999999
Q ss_pred EcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 222 AFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+|.+|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 72 LFAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEeCCEE----eeeecCCCCHHHHHHHh
Confidence 9997754 45789999999999886
No 37
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.61 E-value=5.6e-16 Score=136.80 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=88.2
Q ss_pred EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
|..|+..+|+..+.++++++|.|||+||++|+++.|.++++++.++ +.+.++.|||++. ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 6789999999999777899999999999999999999999999997 5568999999952 1345899998 88
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
++||+++|++|.. ...|.|..+.+.|++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999998864 46899999999999884
No 38
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.61 E-value=8.3e-16 Score=139.30 Aligned_cols=103 Identities=24% Similarity=0.420 Sum_probs=86.0
Q ss_pred EEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 138 V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
|++|+.++|++.| +++++++|.||||||++|+.+.|.|+++++.+++ .+.++.|||+.+. ...+|++++
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------ 75 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------ 75 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence 6889999999998 4567999999999999999999999999999864 4689999997432 245899998
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHH
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTD 247 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~ 247 (658)
|+++||+++|++|..+.....+|.|+ |..+.+..
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 88999999999997655556788887 77666643
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.61 E-value=8.9e-16 Score=135.50 Aligned_cols=101 Identities=20% Similarity=0.383 Sum_probs=87.4
Q ss_pred EEEecCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 138 V~~Lt~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
|..||.++|+..+. ++++++|.|||+||++|+++.|.|+++++.++ +.+.++.+||+.+ ...+|++++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~------i 73 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYG------V 73 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCC------C
Confidence 57899999999884 56699999999999999999999999999997 3468999999951 345999998 8
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+++||+++|.+|.. ....|.|.++.+.|.+|+
T Consensus 74 ~~~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 74 SGFPTLKFFPKGST---EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCcCEEEEEeCCCC---CccccCCccCHHHHHhhC
Confidence 89999999988753 357899999999999985
No 40
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.61 E-value=9.1e-16 Score=134.71 Aligned_cols=99 Identities=23% Similarity=0.395 Sum_probs=88.5
Q ss_pred ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCcccceeeee
Q 006171 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (658)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yP 218 (658)
||.++|++.+.++++++|.||++||++|+++.|.|+++|+.+++ .+.++.+||+++ ..+|++++ |+++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCC------CCcCC
Confidence 56788998888899999999999999999999999999999987 469999999954 45999999 88999
Q ss_pred EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 219 Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|+.+|.+|.. ...|.|.++.+.|..|+.++
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999998863 47899999999999999764
No 41
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=5e-16 Score=168.60 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.2
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||.++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 469999999999999999999999999999999985 466889999999999999999999999998653
No 42
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=5.6e-16 Score=168.57 Aligned_cols=69 Identities=32% Similarity=0.551 Sum_probs=64.4
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 369999999999999999999999999999999986 467889999999999999999999999998754
No 43
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.5e-16 Score=167.55 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=63.7
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4699999999999999999999999999999999863 45789999999999999999999999997653
No 44
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.5e-16 Score=168.05 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=64.5
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 467889999999999999999999999998753
No 45
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=7.6e-16 Score=166.60 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=63.5
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.|||++|||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 699999999999999999999999999999999863 55789999999999999999999999998753
No 46
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-16 Score=167.30 Aligned_cols=68 Identities=26% Similarity=0.437 Sum_probs=63.2
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
...||+||||.++|+..+||++||+||++||||+||. +.++|+.|+.||+|||||..|+.||.+.++-
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqi 78 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQI 78 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence 5689999999999999999999999999999999883 6778999999999999999999999987653
No 47
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1e-15 Score=166.34 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=62.5
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~ 102 (658)
.|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||.+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999874 567899999999999999999999999975
No 48
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=9.3e-16 Score=161.16 Aligned_cols=68 Identities=29% Similarity=0.536 Sum_probs=63.7
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
..|||+||||+++||.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||.++
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 369999999999999999999999999999999985 46788999999999999999999999999875
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.58 E-value=1.2e-15 Score=167.75 Aligned_cols=105 Identities=11% Similarity=0.287 Sum_probs=89.7
Q ss_pred eEEEecCCCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccc
Q 006171 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
.|++||.+||+++|. .+++|||.||||||++|+.+.|.|+++|+++++. +.|++|||+.+.. ..++++++
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~----- 425 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQ----- 425 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcC-----
Confidence 589999999999984 7889999999999999999999999999999875 5899999995431 11346788
Q ss_pred ceeeeeEEEEcCCCCCCCCCccccc-CCCCHhHHHHHHHH
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~-G~rs~~~Lv~fv~k 251 (658)
|++||||++|++|.. .+..|. |.|++++|+.|++.
T Consensus 426 -I~~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 -LGSFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred -CCccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence 889999999999853 357897 58999999999864
No 50
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.1e-15 Score=166.36 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=64.3
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 467889999999999999999999999998653
No 51
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1e-15 Score=166.29 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.3
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 369999999999999999999999999999999885 467899999999999999999999999998754
No 52
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1e-15 Score=152.92 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=65.0
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
..|+|+|||++++|+.++||||||+|+++||||+++. +.++|++||+||++|+||.+|..||.||+.+..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 4579999999999999999999999999999998763 788999999999999999999999999988754
No 53
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.1e-15 Score=166.56 Aligned_cols=69 Identities=28% Similarity=0.536 Sum_probs=63.8
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||.++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 3699999999999999999999999999999999873 56789999999999999999999999998754
No 54
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.1e-15 Score=165.61 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=64.1
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999873 56789999999999999999999999998754
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.3e-15 Score=165.83 Aligned_cols=69 Identities=28% Similarity=0.542 Sum_probs=63.9
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||+++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 3699999999999999999999999999999999863 56789999999999999999999999998753
No 56
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.4e-15 Score=165.04 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=63.8
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 4699999999999999999999999999999999863 45689999999999999999999999998753
No 57
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.57 E-value=4.9e-15 Score=131.69 Aligned_cols=94 Identities=16% Similarity=0.396 Sum_probs=79.8
Q ss_pred CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
++|+.. ..+++++|.|||+||++|+++.|.|+++++.+++. +.++.+||+++ ..+|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcC------CccccEE
Confidence 678864 45679999999999999999999999999999642 58899999954 35899998 8899999
Q ss_pred EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
++|.++. ...|.|.++.+.|.+|+++.
T Consensus 77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence 9997663 26689999999999998763
No 58
>PRK09381 trxA thioredoxin; Provisional
Probab=99.57 E-value=3.5e-15 Score=133.58 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=90.6
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.|..++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.++ .++++++ |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~ 74 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP---GTAPKYG------IR 74 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh---hHHHhCC------CC
Confidence 47889999999876 67889999999999999999999999999999887899999999554 4888888 88
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
++||+++|++|.. ...+.|..+.+.|..|+...
T Consensus 75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 9999999998854 35678999999999998775
No 59
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.6e-15 Score=165.56 Aligned_cols=67 Identities=31% Similarity=0.548 Sum_probs=62.8
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
.|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||.++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 389999999999999999999999999999999873 5678999999999999999999999999865
No 60
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.57 E-value=1.7e-15 Score=122.65 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=56.7
Q ss_pred CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCChhhhhccc
Q 006171 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (658)
Q Consensus 38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~----~~f~~i~~Aye~L~d~~~R~~YD 97 (658)
|||+||||+++++.++||++|+++++++|||+++... +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987544 78999999999999999999998
No 61
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-15 Score=144.04 Aligned_cols=69 Identities=29% Similarity=0.481 Sum_probs=64.0
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.-|||+||||+++++.+|||+|||+|++++||||++ +.++.|..|++||+.|+|+..|++|..||..+.
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 669999999999999999999999999999999985 456679999999999999999999999998764
No 62
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.1e-15 Score=152.37 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=94.2
Q ss_pred eEEEecCCCCCccc--cC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v--~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..+|..||+..| .+ ..|+||.||||||++|+++.|..++++.+++|.+.+++|||++++ .++.+||
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p---~vAaqfg------ 94 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP---MVAAQFG------ 94 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch---hHHHHhC------
Confidence 47899999999988 34 569999999999999999999999999999999999999999554 5999999
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|++.||+++|.+|.. ...|.|....+.|..|+.+.
T Consensus 95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 999999999999974 67889999999999999988
No 63
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.6e-15 Score=164.15 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=63.5
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 699999999999999999999999999999999863 46789999999999999999999999998754
No 64
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.5e-15 Score=163.86 Aligned_cols=69 Identities=23% Similarity=0.468 Sum_probs=63.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccc----cCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~----~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+ ||..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 356789999999999999999999999 987653
No 65
>PLN02309 5'-adenylylsulfate reductase
Probab=99.55 E-value=3e-15 Score=164.60 Aligned_cols=104 Identities=14% Similarity=0.398 Sum_probs=90.3
Q ss_pred eEEEecCCCCCccc---cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc-cchhhhHHHh-hCCCCc
Q 006171 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIGQ 210 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~-e~~~~~~Lc~-k~~i~k 210 (658)
.|+.|+.+||++++ +.+++|||.||||||++|+++.|.|+++|+.+.+. +.|++|||+ ++. .+|. +++
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~--- 419 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQ--- 419 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCC---
Confidence 58999999999987 47899999999999999999999999999999876 699999999 543 3776 577
Q ss_pred ccceeeeeEEEEcCCCCCCCCCcccccC-CCCHhHHHHHHHHh
Q 006171 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (658)
Q Consensus 211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Lv~fv~k~ 252 (658)
|++||||++|++|.. .+..|.| .|++++|+.|++..
T Consensus 420 ---I~~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ---LGSFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ---CceeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHHh
Confidence 889999999998864 3578985 79999999999753
No 66
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.55 E-value=3.1e-15 Score=130.02 Aligned_cols=98 Identities=22% Similarity=0.443 Sum_probs=85.8
Q ss_pred EecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHh--hcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
.||.++|.+.+.+.++++|.||++||++|+++.|.|+++++.+ .+.+.++.|||+++ ..+|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCC------CCCC
Confidence 4778889989977779999999999999999999999999999 46679999999953 45999999 8899
Q ss_pred eEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
||+++|.++.. ....|.|.++++.|.+|+
T Consensus 73 Pt~~~~~~~~~---~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSK---EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCc---ccccCCCCcCHHHHHhhC
Confidence 99999998832 368899999999999884
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.55 E-value=8.8e-14 Score=140.15 Aligned_cols=187 Identities=11% Similarity=0.098 Sum_probs=124.0
Q ss_pred CCcEEEEEec---cCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCC
Q 006171 153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (658)
Q Consensus 153 ~~~~lV~FYa---pwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~ 228 (658)
+...++.|++ +||++|+.+.|.++++++.+.+. +.+..||.+++ ..+|++++ |.++||+++|.+|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~---~~l~~~~~------V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED---KEEAEKYG------VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc---HHHHHHcC------CCccCEEEEEeCCee
Confidence 3455777999 99999999999999999988532 24555555544 45999999 889999999999864
Q ss_pred CCCCcccccCCCCHhHHHHHHHHhhccCC-cceeeccchhhhhhhhhcCCCcEEEEEE-eCCC-CC--CcHHHHHHHHhh
Q 006171 229 SSDCMTRFEGELSVDAVTDWFATAILKLP-RIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTG-ER--ASPFVRQISRNY 303 (658)
Q Consensus 229 ~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP-~~~~it~~~~~~~Fl~~~~~~~v~vl~f-~~~~-~~--~~~~~~~~A~~~ 303 (658)
....|.|..+.+.+.+|+..... +. ....++... .+.+. .. ++.+.|+.| .+.| .| ..+.+..++..+
T Consensus 90 ---~~~~~~G~~~~~~l~~~i~~~~~-~~~~~~~L~~~~-~~~l~-~~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~ 162 (215)
T TIGR02187 90 ---GGIRYTGIPAGYEFAALIEDIVR-VSQGEPGLSEKT-VELLQ-SL-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN 162 (215)
T ss_pred ---eEEEEeecCCHHHHHHHHHHHHH-hcCCCCCCCHHH-HHHHH-hc-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc
Confidence 22478999999999999876621 21 112232221 22222 22 233445545 3322 22 234455555543
Q ss_pred ccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171 304 WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 304 ~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
..+.+..+... ..++++++|+|.+.||+++++++. .+.|..+.+.|.+|+..
T Consensus 163 -~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 -DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 34555555422 357899999999999999987542 27788788889888864
No 68
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=3.7e-15 Score=161.99 Aligned_cols=69 Identities=30% Similarity=0.554 Sum_probs=63.8
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999999999999999999999999999863 45789999999999999999999999998753
No 69
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.8e-15 Score=159.37 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=63.2
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||+.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 599999999999999999999999999999999863 45789999999999999999999999998653
No 70
>PHA02278 thioredoxin-like protein
Probab=99.53 E-value=4.7e-15 Score=131.78 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=79.9
Q ss_pred CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
.++|+..+.++++++|.|||||||+|+.++|.++++++++.+...+.+||++.++. ...++++++ |++.||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence 35677777789999999999999999999999999998876666899999995421 134899998 89999999
Q ss_pred EcCCCCCCCCCcccccCCCCHhHHHHH
Q 006171 222 AFPPGCKSSDCMTRFEGELSVDAVTDW 248 (658)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~f 248 (658)
+|++|.. .....|..+.+.|.++
T Consensus 78 ~fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEE----EEEEeCCCCHHHHHhh
Confidence 9999964 4567898888888775
No 71
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=6.2e-15 Score=160.03 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=63.4
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.|||+||||+++||.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 59999999999999999999999999999999885 356789999999999999999999999998653
No 72
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.52 E-value=8.4e-15 Score=158.31 Aligned_cols=67 Identities=31% Similarity=0.566 Sum_probs=62.9
Q ss_pred CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999985 466889999999999999999999999998764
No 73
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.5e-15 Score=152.77 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
..|||+||||+++|+.+|||+||++|+++||||.|. .+.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 449999999999999999999999999999999766 57788999999999999999999999999875
No 74
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.8e-15 Score=156.29 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=64.2
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~------~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
..|||.+|+|+++|+.+|||+|||++++.||||+.. .+++.|+.|.+|||||+||.+|+.||.||++|..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 348999999999999999999999999999999765 2456799999999999999999999999999875
No 75
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.51 E-value=9.3e-15 Score=167.22 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=65.1
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
..+||+||||+++|+..+||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+..
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 579999999999999999999999999999999987 3567899999999999999999999999988743
No 76
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.1e-14 Score=158.34 Aligned_cols=69 Identities=26% Similarity=0.509 Sum_probs=64.0
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||+||||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 359999999999999999999999999999999986 467889999999999999999999999998653
No 77
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1e-14 Score=158.46 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=63.2
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
.|||++|||+++|+.++||+|||+|+++||||+|+. +.++|++|++||++|+||.+|+.||+||.++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 599999999999999999999999999999999863 6788999999999999999999999999865
No 78
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.1e-14 Score=158.87 Aligned_cols=68 Identities=25% Similarity=0.510 Sum_probs=63.4
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~---~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
..|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||+||..+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 469999999999999999999999999999999986 35678999999999999999999999999865
No 79
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.50 E-value=1.6e-14 Score=128.45 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=78.7
Q ss_pred CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 143 ~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
.++|++.|. .+++++|+|||+||++|+.+.|.++++++++ +.+.++.||++++.....+|++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777883 3899999999999999999999999999999 556899999997654456999998 8999999
Q ss_pred EEcCCCCCCCCCcccccCCCCHhHHHHHHH
Q 006171 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~ 250 (658)
++|++|.. ...+.|.. .+.|.+-+.
T Consensus 76 ~~~~~G~~----v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 76 LFYKDGEK----IHEEEGIG-PDELIGDVL 100 (103)
T ss_pred EEEeCCeE----EEEEeCCC-HHHHHHHHH
Confidence 99998864 46778844 566665543
No 80
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-14 Score=150.42 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=64.5
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|||++|||+.+|+..+|++|||+.+++||||+||+ +.++|+.+.+||+||+|+..|..||.+|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999984 67789999999999999999999999997763
No 81
>PRK10996 thioredoxin 2; Provisional
Probab=99.49 E-value=1.6e-14 Score=135.62 Aligned_cols=103 Identities=20% Similarity=0.344 Sum_probs=91.7
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
.++.++.++|+..++++++++|.||++||++|+++.|.++++++++.+.+.+++||+++++ .++++++ |++
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~l~~~~~------V~~ 106 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER---ELSARFR------IRS 106 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH---HHHHhcC------CCc
Confidence 3577899999998888999999999999999999999999999999887899999999554 5899998 889
Q ss_pred eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+||+++|.+|.. ...+.|..+.+.|.+|+.+.
T Consensus 107 ~Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 107 IPTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 999999998854 46778999999999999765
No 82
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.48 E-value=2.1e-14 Score=152.06 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.1
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~ 102 (658)
.|||++|||+++|+.+|||+|||+|+++||||+|+ .+.++|++|++||++|+||.+|+.||.||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999885 4678899999999999999999999999854
No 83
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-14 Score=138.63 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=63.2
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~-----~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
..|+|+||||.++|+..+||+|||+|+++||||+++ .+.++|++++.||.+|+|.++|+.||.-|.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 669999999999999999999999999999999985 36678999999999999999999999988654
No 84
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.45 E-value=2.3e-14 Score=128.84 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 144 ~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++|+..+. ++++++|.|||+||++|+.+.|.++++|.++.+.+.+++||+++++ .|+++++ |++.||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~---~la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP---DFNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH---HHHHHcC------CCCCCEEE
Confidence 45666673 6789999999999999999999999999999888899999999665 5999999 88999999
Q ss_pred EcCCCCC
Q 006171 222 AFPPGCK 228 (658)
Q Consensus 222 ~f~~g~~ 228 (658)
+|++|..
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999864
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.45 E-value=8.3e-14 Score=121.71 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=84.4
Q ss_pred cCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 142 t~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
+.++|.+.+. .+++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+++. .++++++ |.++||+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~~P~~ 72 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP---DIAAKYG------IRSIPTL 72 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH---HHHHHcC------CCcCCEE
Confidence 5567777774 4669999999999999999999999999999877899999999554 4899998 8899999
Q ss_pred EEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
++|++|.. ...+.|.++.+.|.+|+.+.
T Consensus 73 ~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 73 LLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 99988754 35678999999999999765
No 86
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.44 E-value=6.6e-14 Score=124.15 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=79.1
Q ss_pred ecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceeeeeE
Q 006171 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (658)
Q Consensus 141 Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT 219 (658)
-|.++|+..++++++++|.|||+||++|+.+.|.++++++.+++. +.++.||++ +. .++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcC------CCcCcE
Confidence 456788888888999999999999999999999999999999754 589999999 32 3889988 889999
Q ss_pred EEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
+++|++|.. .....| .+.+.|.+++.+
T Consensus 75 ~~~~~~g~~----~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGEL----VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEECCEE----EEEEec-CChHHHHHHHhh
Confidence 999998864 234456 477888777643
No 87
>PTZ00102 disulphide isomerase; Provisional
Probab=99.44 E-value=1.2e-13 Score=155.19 Aligned_cols=106 Identities=14% Similarity=0.244 Sum_probs=93.1
Q ss_pred ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc--ccceeeeecccchhhhHHHhhCCCCccc
Q 006171 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g--~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
..|..|+.++|+..| ++++++||.||||||+||+.+.|.|+++|+.+++ .+.++.+||+.+.. +|++++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~----- 428 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS----- 428 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC-----
Confidence 358899999999987 7889999999999999999999999999999875 35899999996543 788888
Q ss_pred ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v 253 (658)
|+++||+++|++|.. .+..|.|.++.++|.+|+.+..
T Consensus 429 -v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 429 -WSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred -CcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHcC
Confidence 889999999998864 3467999999999999999873
No 88
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.6e-13 Score=150.02 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=93.4
Q ss_pred eEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..++..+|+..+ ..+..|||.||+|||+||+.++|+|+++|..++ +.+.++++||+ ....+|.+++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence 48999999999988 788999999999999999999999999999997 45599999999 5556999999
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v 253 (658)
|++|||+++|++|.. ....|.|.|+.++|+.|+.+..
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence 889999999999864 2467789999999999998873
No 89
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.43 E-value=9.4e-12 Score=121.23 Aligned_cols=148 Identities=18% Similarity=0.342 Sum_probs=115.5
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC-CChHHHHHHHHhhccCCCccc
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQL 371 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~-~~~~~L~~fi~~~~~~~vP~l 371 (658)
...+..+|..+++.+.|+.+. +.+++++++++. |+|++|++++.++..|.|. ++.+.|.+||..+++|+++++
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 344566888998888888885 466999999987 9999999988889999998 899999999999999999999
Q ss_pred cCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-ChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcE
Q 006171 372 RSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRL 450 (658)
Q Consensus 372 ts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v 450 (658)
+..+... ++.. ++ ..+++++.+. ....+..++.++++++ .+++ ++
T Consensus 83 t~~n~~~-~~~~------~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~----------------------~~~~-~~ 128 (184)
T PF13848_consen 83 TPENFEK-LFSS------PK----PPVLILFDNKDNESTEAFKKELQDIAK----------------------KFKG-KI 128 (184)
T ss_dssp STTHHHH-HHST------SS----EEEEEEEETTTHHHHHHHHHHHHHHHH----------------------CTTT-TS
T ss_pred chhhHHH-HhcC------CC----ceEEEEEEcCCchhHHHHHHHHHHHHH----------------------hcCC-eE
Confidence 9988654 4421 21 2456666553 4456777777877777 5554 49
Q ss_pred EEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEE
Q 006171 451 TFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV 492 (658)
Q Consensus 451 ~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~ 492 (658)
.|+|+|++..+++++.|... ..++|.++|+
T Consensus 129 ~f~~~d~~~~~~~~~~~~i~------------~~~~P~~vi~ 158 (184)
T PF13848_consen 129 NFVYVDADDFPRLLKYFGID------------EDDLPALVIF 158 (184)
T ss_dssp EEEEEETTTTHHHHHHTTTT------------TSSSSEEEEE
T ss_pred EEEEeehHHhHHHHHHcCCC------------CccCCEEEEE
Confidence 99999999889999977322 2356999999
No 90
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.43 E-value=1.6e-13 Score=109.38 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.1
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~ 91 (658)
.|||++|||+++++.++||++|+++++++|||++++ +.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 5678999999999999985
No 91
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.43 E-value=1.4e-13 Score=123.07 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=84.9
Q ss_pred EEEecCCCCCccccCCCcEEEEEeccC--CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapw--C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.-.+|..||++.+..+.+.+|.||++| |++|+.++|.++++|+++.+.+.+++||+++++ .|+.+|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~------V~ 82 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFG------VL 82 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcC------CC
Confidence 457899999988888999999999997 999999999999999999988899999999654 5999999 89
Q ss_pred eeeEEEEcCCCCCCCCCcccccCCCCHhHHH
Q 006171 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (658)
Q Consensus 216 ~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv 246 (658)
+.||+++|++|.. ...+.|..+.+.++
T Consensus 83 sIPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 9999999999964 45667888777654
No 92
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.43 E-value=7.5e-14 Score=132.50 Aligned_cols=90 Identities=16% Similarity=0.367 Sum_probs=74.8
Q ss_pred ceEEEecCCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCccc
Q 006171 136 HAFNVVTSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
..|..++.++|++.+. .+.+|+|.||||||++|+++.|.|+++|+++++. +.+++|||++++ ++|+++++...|
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecC
Confidence 3578899999999883 4579999999999999999999999999999754 699999999654 599999944333
Q ss_pred ceeeeeEEEEcCCCCC
Q 006171 213 FRRGLPSLVAFPPGCK 228 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~ 228 (658)
.|+++||+++|++|..
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 3444999999998864
No 93
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=135.89 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHH
Q 006171 4 PTMISKVKAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQ 81 (658)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~ 81 (658)
+++..+..++.+..++..+.+.+..... +...|+|+||||+++++..||.+|||+|++++|||++++ +.+.|..|.
T Consensus 2 A~aat~rw~Lvl~~Llp~l~vgl~egLY--CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iA 79 (329)
T KOG0722|consen 2 APAATERWCLVLILLLPSLFVGLSEGLY--CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIA 79 (329)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhhhc--ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhh
Confidence 4445544444333333333333333333 336699999999999999999999999999999998764 456799999
Q ss_pred HHHHHcCChhhhhcccccC
Q 006171 82 YAYELLTDPLWKRNYDVYG 100 (658)
Q Consensus 82 ~Aye~L~d~~~R~~YD~~g 100 (658)
.||++|.|.+.|..||-.-
T Consensus 80 tayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 80 TAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cccccccchhhHHhHHHHh
Confidence 9999999999999999663
No 94
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.42 E-value=8.4e-14 Score=125.84 Aligned_cols=90 Identities=14% Similarity=0.201 Sum_probs=76.1
Q ss_pred ceEEEecCCCCCccccC---CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171 136 HAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v~~---~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
..|..+|.++|.+.|.+ +.+++|.||+|||++|+.+.|.++++|+++.+ +++++||++++ .+|++++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~----- 73 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD----- 73 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC-----
Confidence 46789999999999843 38999999999999999999999999999864 58999999944 5999998
Q ss_pred ceeeeeEEEEcCCCCCCCCCcccccCCC
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFEGEL 240 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~r 240 (658)
|+++||+++|++|.. ...+.|..
T Consensus 74 -i~~~Pt~~~f~~G~~----v~~~~G~~ 96 (113)
T cd02957 74 -IKVLPTLLVYKNGEL----IDNIVGFE 96 (113)
T ss_pred -CCcCCEEEEEECCEE----EEEEecHH
Confidence 889999999999864 34555533
No 95
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.42 E-value=2.3e-13 Score=106.45 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.1
Q ss_pred CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCC
Q 006171 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (658)
Q Consensus 38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Aye~L~d 89 (658)
|||++|||+++++.++||++||+|+++||||++++ +.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999875 67789999999999986
No 96
>PHA03102 Small T antigen; Reviewed
Probab=99.42 E-value=1.6e-13 Score=129.15 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=62.5
Q ss_pred cCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
...|+||||+++| |.++||+|||++++++|||++ ++.++|++|++||++|+|+..|..||.+|.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 3679999999999 999999999999999999997 567899999999999999999999999998864
No 97
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.40 E-value=2.6e-13 Score=120.51 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=80.0
Q ss_pred CCCCccccCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeE
Q 006171 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPS 219 (658)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPT 219 (658)
++|++.+.+++++||.||++||++|+.+.|.+ +++++.+.+...+..||++++. ....++++++ |+++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 35666777889999999999999999999999 6888888876789999998532 2456899998 889999
Q ss_pred EEEcCC--CCCCCCCcccccCCCCHhHHHHHH
Q 006171 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 220 l~~f~~--g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+++|.+ |. .+..+.|.++.+.|.+++
T Consensus 76 i~~~~~~~g~----~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEP----EPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCC----CCcccccccCHHHHHHHh
Confidence 999985 43 357789999999998875
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.39 E-value=4.9e-13 Score=137.41 Aligned_cols=64 Identities=30% Similarity=0.526 Sum_probs=58.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhhhccccc
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVY 99 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~------~~~~f~~i~~Aye~L~d~~~R~~YD~~ 99 (658)
..|||+||||.++|+..||.+|||+++.+||||..+. +..+|..|..|-|||+||++|+.||+.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 7899999999999999999999999999999996542 445699999999999999999999974
No 99
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.35 E-value=6.2e-13 Score=149.43 Aligned_cols=68 Identities=28% Similarity=0.522 Sum_probs=62.8
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
.|||+||||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 59999999999999999999999999999999976 355679999999999999999999999987653
No 100
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.34 E-value=1.1e-12 Score=146.35 Aligned_cols=104 Identities=14% Similarity=0.305 Sum_probs=90.7
Q ss_pred ceEEEecCCCCCccc-cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhc---ccceeeeecccchhhhHHHhhCCCCcc
Q 006171 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI 211 (658)
Q Consensus 136 ~~V~~Lt~~nF~~~v-~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g---~~~vg~Vdc~e~~~~~~Lc~k~~i~k~ 211 (658)
..|..|+.++|++.+ ++++.+||.||||||++|+.+.|.|+++|+.+.+ .+.++.|||+.+. ++. ++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~---- 416 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE---- 416 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC----
Confidence 357899999999998 6789999999999999999999999999999988 5689999999653 333 56
Q ss_pred cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|+++||+++|++|.. ..+..|.|.++.++|++|+.+.
T Consensus 417 --i~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 --VEGFPTIKFVPAGKK--SEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred --ccccCEEEEEeCCCC--cCceEecCcCCHHHHHHHHHhc
Confidence 889999999998864 2356899999999999999887
No 101
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.34 E-value=1.7e-12 Score=122.22 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
..|+..+..+++++|.|||+||++|+.+.|.++++++.+.+...|..||.+.+. ...++++++ |.++||+++|
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~~ 83 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVFL 83 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEEE
Confidence 456666678899999999999999999999999999999876788888877432 235888888 8899999999
Q ss_pred C-CCCCCCCCcccccCCCCHhHHHHHHHHhhcc
Q 006171 224 P-PGCKSSDCMTRFEGELSVDAVTDWFATAILK 255 (658)
Q Consensus 224 ~-~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~ 255 (658)
. +|.. ...+.|..+.+.|.+++.+.+.+
T Consensus 84 ~~~G~~----v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 84 DREGNE----EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred CCCCCE----EEEEeCCCCHHHHHHHHHHHHcC
Confidence 5 5543 45678999999999998887543
No 102
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.33 E-value=9.2e-13 Score=119.19 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=72.8
Q ss_pred eEEEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee
Q 006171 137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (658)
Q Consensus 137 ~V~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~ 215 (658)
.+..+++ ++|.+.+.++.+++|.||+|||++|+.+.|.++++++++.+ +++.+||+++++ .++++++ |+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~---~l~~~~~------v~ 74 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAP---FLVEKLN------IK 74 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCH---HHHHHCC------Cc
Confidence 4677887 88999998889999999999999999999999999998754 699999999554 5899998 88
Q ss_pred eeeEEEEcCCCCC
Q 006171 216 GLPSLVAFPPGCK 228 (658)
Q Consensus 216 ~yPTl~~f~~g~~ 228 (658)
++||+++|++|..
T Consensus 75 ~vPt~l~fk~G~~ 87 (113)
T cd02989 75 VLPTVILFKNGKT 87 (113)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999853
No 103
>PTZ00051 thioredoxin; Provisional
Probab=99.31 E-value=1.9e-12 Score=113.23 Aligned_cols=93 Identities=16% Similarity=0.329 Sum_probs=75.0
Q ss_pred EEecC-CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 139 ~~Lt~-~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
.++++ ++|+..+..+++++|.||++||++|+++.|.|+++++++.+ +.++.|||+++ ..++++++ |.++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~---~~~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDEL---SEVAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcch---HHHHHHCC------Ccee
Confidence 44444 56777778889999999999999999999999999997654 58999999954 45999999 8899
Q ss_pred eEEEEcCCCCCCCCCcccccCCCCHhHHH
Q 006171 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (658)
Q Consensus 218 PTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv 246 (658)
||+++|++|.. ...+.|. ..++|.
T Consensus 73 Pt~~~~~~g~~----~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 73 PTFKVFKNGSV----VDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCCeE----EEEEeCC-CHHHhh
Confidence 99999998864 4566775 345543
No 104
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.31 E-value=3.2e-12 Score=108.66 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 144 ~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
++|++.+..+++++|.||++||++|+.+.|.++++++. .+...++.|||+.+ ..++++++ +.++||+++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~------v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN---PELAEEYG------VRSIPTFLFF 70 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC---hhHHHhcC------cccccEEEEE
Confidence 35777776669999999999999999999999999988 56679999999954 45899998 8899999999
Q ss_pred CCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 224 PPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
.+|.. ...|.|..+.+.|.+|+
T Consensus 71 ~~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 71 KNGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred ECCEE----EEEEecCCCHHHHHHHh
Confidence 98853 46778988889998886
No 105
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.30 E-value=1.2e-12 Score=114.26 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCCCccccC--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 143 SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 143 ~~nF~~~v~~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
.++|++.+.. +++++|.||++||++|+++.|.++++++.+.+.+.+.+||++++ ..++++++ |+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~---~~~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL---PEISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC---HHHHHhcC------CccccEE
Confidence 3567777743 59999999999999999999999999999866679999999944 45899998 8899999
Q ss_pred EEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
++|.+|.. ...+.|. +.+.|.+.+
T Consensus 73 ~~~~~g~~----~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTI----VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEECCEE----EEEEeCC-CHHHHHHhh
Confidence 99998753 3444553 456666543
No 106
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.4e-12 Score=111.26 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
.+++++|.|||+|||+|+.++|.++++|.++.. +.|.+||+++ ...+|++++ |+..||+++|++|..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~--- 86 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE--- 86 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE---
Confidence 468999999999999999999999999999988 8999999997 455899998 999999999999965
Q ss_pred CcccccCCCCHhHHHHHHH
Q 006171 232 CMTRFEGELSVDAVTDWFA 250 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv~ 250 (658)
..++-|.. .+.+.+.+.
T Consensus 87 -~~~~vGa~-~~~l~~~i~ 103 (106)
T KOG0907|consen 87 -VDEVVGAN-KAELEKKIA 103 (106)
T ss_pred -EEEEecCC-HHHHHHHHH
Confidence 35555654 335555443
No 107
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.6e-12 Score=126.56 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=60.7
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhhhcccccC
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG 100 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Aye~L~d~~~R~~YD~~g 100 (658)
..+||+||||+++|+..||++|||+++++||||+++. +.++|..|++||++|+|+..|+.||.++
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3599999999999999999999999999999999874 4588999999999999999999999985
No 108
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.26 E-value=8e-12 Score=109.62 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=76.3
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~ 230 (658)
+.+++++|.||++||+.|+.+.|.++++++++.+.+.+..||+++++ +++++++ |.++||+.+|.+|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~---~l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ---EIAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH---HHHHHCC------CeeccEEEEEECCeE--
Confidence 57889999999999999999999999999999877789999999554 5889998 889999999988754
Q ss_pred CCcccccCCCCHhHHHHHH
Q 006171 231 DCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 231 ~~~~~Y~G~rs~~~Lv~fv 249 (658)
...+.|.++.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 57788999999998886
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.23 E-value=6e-12 Score=117.50 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=76.3
Q ss_pred CCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 143 ~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
.++|++.| ..+++++|.|||+||++|+.+.|.++++|+++++...|.+||.++++ +++++|+ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~---dla~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP---DFNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH---HHHHHcC------ccCCCcE
Confidence 46677777 35789999999999999999999999999999988899999999665 5999999 8878766
Q ss_pred E-EcCCCCCCCCCcccccC--------CCCHhHHHHHHHH
Q 006171 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFAT 251 (658)
Q Consensus 221 ~-~f~~g~~~~~~~~~Y~G--------~rs~~~Lv~fv~k 251 (658)
+ +|++|.. ......| ..+.++|++-+..
T Consensus 82 ~~ffk~g~~---~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 82 MFFFRNKHI---MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEECCeE---EEEEecccccccccccCCHHHHHHHHHH
Confidence 6 8898863 1233456 3455566555443
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.18 E-value=2.6e-11 Score=109.73 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=76.8
Q ss_pred CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCC
Q 006171 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (658)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~ 225 (658)
|...+......+|.||++||++|+.+.|.+++++... +.+.+..||.++++ .++++++ |.++||+.+|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcC------CCcCCEEEEEeC
Confidence 4444545667889999999999999999999999876 56789999999554 5999999 889999999998
Q ss_pred CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|... ....|.|..+...+.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7541 223688988888888888654
No 111
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.17 E-value=2e-11 Score=119.03 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=70.6
Q ss_pred eEEEecC-CCCCcccc-C--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171 137 AFNVVTS-EDFPSIFH-D--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 137 ~V~~Lt~-~nF~~~v~-~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
.|..++. ++|.+.|. + +.+++|.||+|||++|+.+.|.++++|..+. .++|.+||+++. .++.+++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~----~l~~~f~----- 132 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT----GASDEFD----- 132 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch----hhHHhCC-----
Confidence 5788999 99999984 3 3499999999999999999999999999874 479999999943 5888988
Q ss_pred ceeeeeEEEEcCCCCC
Q 006171 213 FRRGLPSLVAFPPGCK 228 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~ 228 (658)
|+++|||++|++|..
T Consensus 133 -v~~vPTlllyk~G~~ 147 (175)
T cd02987 133 -TDALPALLVYKGGEL 147 (175)
T ss_pred -CCCCCEEEEEECCEE
Confidence 889999999999853
No 112
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=2.7e-11 Score=116.59 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=55.6
Q ss_pred cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHHHHcCChhhhhccccc
Q 006171 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDVY 99 (658)
Q Consensus 37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~~~~------~f~~i~~Aye~L~d~~~R~~YD~~ 99 (658)
.|||++|||++. ++..+|+++||+|+++||||++....+ .+..||+||++|+||.+|+.|+.-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 489999999997 789999999999999999999764333 367999999999999999999753
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.15 E-value=5.1e-11 Score=105.12 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=74.5
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee--eeeEEEEcCC--CC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~--~yPTl~~f~~--g~ 227 (658)
.+.++++.||++||++|+.+.|.++++|+++++.++++.||+++++ .+++.++ |. ++||+++|.. |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~---~~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG---RHLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH---HHHHHcC------CChhhCCEEEEEeccccc
Confidence 3689999999999999999999999999999999999999999544 5899999 88 9999999998 43
Q ss_pred CCCCCccccc-CCCCHhHHHHHHHHh
Q 006171 228 KSSDCMTRFE-GELSVDAVTDWFATA 252 (658)
Q Consensus 228 ~~~~~~~~Y~-G~rs~~~Lv~fv~k~ 252 (658)
. ..+. |..+.++|.+|+.+.
T Consensus 82 k-----~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 K-----YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c-----cCCCccccCHHHHHHHHHhh
Confidence 3 3333 455899999998764
No 114
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.14 E-value=4.4e-11 Score=115.81 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.7
Q ss_pred cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (658)
Q Consensus 37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~ 98 (658)
.|||++|||++. ++..+|+++||+|++++|||+... +.+.+..||+||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999998652 23468999999999999999999984
No 115
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.11 E-value=3.2e-11 Score=107.87 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=65.8
Q ss_pred CCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 144 ~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
+.|++.|. .+++++|.|+|+||++|+.+.|.++++|+++++.+.|.+||.++.+ +++++++ |+..||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~---dva~~y~------I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP---VYTQYFD------ISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH---HHHHhcC------ceeCcEEE
Confidence 34556662 5899999999999999999999999999999877899999999555 5999999 88999999
Q ss_pred EcCCCC
Q 006171 222 AFPPGC 227 (658)
Q Consensus 222 ~f~~g~ 227 (658)
+|.+|.
T Consensus 74 ffkngk 79 (114)
T cd02986 74 FFFNGQ 79 (114)
T ss_pred EEECCc
Confidence 999885
No 116
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.11 E-value=9e-11 Score=113.99 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=55.6
Q ss_pred CccCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--hH------HHHHHHHHHHHHcCChhhhhcccc
Q 006171 35 FPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--ST------ADFLKIQYAYELLTDPLWKRNYDV 98 (658)
Q Consensus 35 ~~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--~~------~~f~~i~~Aye~L~d~~~R~~YD~ 98 (658)
+..|||++|||++. ++..+|+++||+|+++||||+++. .. +.+..||+||++|+||.+|+.|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 46799999999985 678999999999999999998753 22 236899999999999999999994
No 117
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.10 E-value=9.2e-11 Score=107.58 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=80.9
Q ss_pred EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------hhhHHHhhCCCC
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG 209 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------~~~~Lc~k~~i~ 209 (658)
+..+|.++|.+.+.+++..+|.||++||++|+.+.|..++++++ ....+..||.+.+. ....+.+++++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 46688888999998899999999999999999999999999997 33579999988432 223466666521
Q ss_pred cccceeeeeEEEEcCCCCCCCCCcccccC-CCCHhHHHHHH
Q 006171 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (658)
Q Consensus 210 k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-~rs~~~Lv~fv 249 (658)
+.|.+.||+++|++|.. .....| ..+.++|.+|+
T Consensus 86 --~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 86 --TSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA 120 (122)
T ss_pred --ccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence 22778999999999964 344567 55688888885
No 118
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=1.7e-10 Score=111.66 Aligned_cols=63 Identities=16% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccc
Q 006171 36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (658)
Q Consensus 36 ~~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~ 98 (658)
..|||++||+++. .+..+|+++||+|+++||||++.. +.+.+..||+||++|+||.+|+.|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5699999999987 568999999999999999998753 23459999999999999999999995
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.06 E-value=1.2e-10 Score=115.02 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=67.9
Q ss_pred eEEEecCCCCCccc-cC--CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v-~~--~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..+|..+|...| .+ +.+++|.||++||++|+.+.|.|+++|..+. .++|.+||++ . ++.+|+
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------ 149 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------ 149 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence 57889999998877 33 3589999999999999999999999999984 4699999998 3 356777
Q ss_pred eeeeeEEEEcCCCCC
Q 006171 214 RRGLPSLVAFPPGCK 228 (658)
Q Consensus 214 V~~yPTl~~f~~g~~ 228 (658)
|+++|||++|++|..
T Consensus 150 i~~lPTlliyk~G~~ 164 (192)
T cd02988 150 DKNLPTILVYRNGDI 164 (192)
T ss_pred CCCCCEEEEEECCEE
Confidence 889999999999864
No 120
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.06 E-value=1.4e-10 Score=122.68 Aligned_cols=70 Identities=30% Similarity=0.459 Sum_probs=63.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhcccccCchhhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~~ 105 (658)
.-|||+|||++.+++..+||++||+|+.++||||-++ .++.+.+|++||+.|+|...|+.|-.||..+.+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 5699999999999999999999999999999998663 356799999999999999999999999987643
No 121
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.06 E-value=4.4e-10 Score=94.79 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=68.1
Q ss_pred EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (658)
Q Consensus 156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~ 235 (658)
.+..||+|||++|+.+.|.++++++++++.+.+..||+++++ .++++++ |+++||+++ +|. ..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~---~~~~~~~------v~~vPt~~~--~g~------~~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP---QKAMEYG------IMAVPAIVI--NGD------VE 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH---HHHHHcC------CccCCEEEE--CCE------EE
Confidence 467899999999999999999999999877789999998554 5888888 889999986 442 46
Q ss_pred ccCCCCHhHHHHHHHHh
Q 006171 236 FEGELSVDAVTDWFATA 252 (658)
Q Consensus 236 Y~G~rs~~~Lv~fv~k~ 252 (658)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 78999999999988764
No 122
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.04 E-value=2.1e-10 Score=102.68 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.5
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~ 88 (658)
..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999985 67889999999999985
No 123
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.9e-10 Score=122.69 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=62.5
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhhhcccccCchh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~ 103 (658)
..|+|.+|||++++++++||+.||++|...|||||. .+.|.|+.++.|||+|+|+++|+.||.-...+
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 679999999999999999999999999999999886 57788999999999999999999999765443
No 124
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.02 E-value=3e-10 Score=104.24 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=74.2
Q ss_pred cccCC-CcEEEEEeccCCCCCCCChHHHH---HHHHHhhcccceeeeecccch----------hhhHHHhhCCCCcccce
Q 006171 149 IFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR 214 (658)
Q Consensus 149 ~v~~~-~~~lV~FYapwC~~Ck~l~P~w~---~~A~~l~g~~~vg~Vdc~e~~----------~~~~Lc~k~~i~k~f~V 214 (658)
...++ ++++|.|||+||++|+++.|.+. ++.+.++....+..||.+++. ....++.+++ |
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~------v 82 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR------V 82 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC------C
Confidence 44567 89999999999999999999885 566667655577888887431 1245888888 8
Q ss_pred eeeeEEEEcCCC-CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 215 RGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 215 ~~yPTl~~f~~g-~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+++||+++|.++ +. ....+.|..+.+.+..++...
T Consensus 83 ~~~Pt~~~~~~~gg~---~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 83 RFTPTVIFLDPEGGK---EIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred ccccEEEEEcCCCCc---eeEEecCCCCHHHHHHHHHHH
Confidence 899999999875 33 346778999888888887665
No 125
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.9e-10 Score=111.76 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=79.5
Q ss_pred EEEec-CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 138 FNVVT-SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 138 V~~Lt-~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
|++++ +++|...+. ..+.++|.|||.|||+|++++|.|+.+|..+.+ ..+.+||.+ .....+.-+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd---~c~~taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVD---ECRGTAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHH---HhhchhhhcC------c
Confidence 44444 467988883 567999999999999999999999999999943 489999998 3233666677 9
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v 253 (658)
+..||+++|++|.+ ...++|. ++.+|.+-+.++.
T Consensus 73 ~amPTFiff~ng~k----id~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVK----IDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred ccCceEEEEecCeE----eeeecCC-CHHHHHHHHHHHh
Confidence 99999999999976 3556664 4777777777763
No 126
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.2e-10 Score=119.83 Aligned_cols=69 Identities=35% Similarity=0.561 Sum_probs=62.4
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhcccccCchhh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD~~g~~~~ 104 (658)
..|+|++|||.++|+.++|++|||+++++||||+|+.. ..+|.+|.+||++|+|+.+|..||++|.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 46999999999999999999999999999999998743 3359999999999999999999999998543
No 127
>PTZ00062 glutaredoxin; Provisional
Probab=98.92 E-value=6.6e-09 Score=103.30 Aligned_cols=162 Identities=8% Similarity=-0.007 Sum_probs=101.4
Q ss_pred CCCCCccccC-CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEE
Q 006171 143 SEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 143 ~~nF~~~v~~-~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
.++|++.+.+ ....++.|+|+||+.|+++.|..+++++++ +.+.+..||.+ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc-----------cC------cccceEEE
Confidence 3456666754 478899999999999999999999999988 45799999976 45 88999999
Q ss_pred EcCCCCCCCCCcccccCCCCHhHHHHHHHHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCC---CCCCcH-HHH
Q 006171 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASP-FVR 297 (658)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~---~~~~~~-~~~ 297 (658)
+|++|.. ..++.|.- +..|..++.+.....+.. . +.+++...-...+++||-..+ ..|+.- ..+
T Consensus 68 ~~~~g~~----i~r~~G~~-~~~~~~~~~~~~~~~~~~------~-~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k 135 (204)
T PTZ00062 68 FYQNSQL----INSLEGCN-TSTLVSFIRGWAQKGSSE------D-TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV 135 (204)
T ss_pred EEECCEE----EeeeeCCC-HHHHHHHHHHHcCCCCHH------H-HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence 9999864 45666654 888999998873322211 1 233333321222334443321 122211 122
Q ss_pred HHHHhhccCceEEEEEeccccc--HhHHhhcCCCCCCEEEE
Q 006171 298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF 336 (658)
Q Consensus 298 ~~A~~~~~~~~f~~v~~~~~~s--~~l~~~f~V~~~Ptlvl 336 (658)
.+...+ .+.|..+.+.+... +.+.+.-|-.++|.|++
T Consensus 136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 233322 56667666543221 33445456667888765
No 128
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.92 E-value=5.7e-10 Score=101.52 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCCCccccC--CCcEEEEEec-------cCCCCCCCChHHHHHHHHHhhcccceeeeecccch----hhhHHHhhCCCCc
Q 006171 144 EDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQ 210 (658)
Q Consensus 144 ~nF~~~v~~--~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----~~~~Lc~k~~i~k 210 (658)
++|.+.|.. +++++|.||| +||++|+.+.|.+++++.++.+.+++.+||+++++ ....+..+++
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~--- 86 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK--- 86 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC---
Confidence 456666643 6899999999 99999999999999999999866899999998532 1234777777
Q ss_pred cccee-eeeEEEEcCCCC
Q 006171 211 IFFRR-GLPSLVAFPPGC 227 (658)
Q Consensus 211 ~f~V~-~yPTl~~f~~g~ 227 (658)
|+ ++||+++|..|.
T Consensus 87 ---I~~~iPT~~~~~~~~ 101 (119)
T cd02952 87 ---LTTGVPTLLRWKTPQ 101 (119)
T ss_pred ---cccCCCEEEEEcCCc
Confidence 98 999999997764
No 129
>PHA02624 large T antigen; Provisional
Probab=98.91 E-value=1e-09 Score=122.83 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=57.0
Q ss_pred ccCcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhhhcc
Q 006171 36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~~R~~Y 96 (658)
..++|++|||+++| +.++||+|||+++++||||++ ++.++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999996 6688999999999999999999999
No 130
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.91 E-value=1.7e-08 Score=93.55 Aligned_cols=117 Identities=23% Similarity=0.313 Sum_probs=85.4
Q ss_pred CCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCC-----ChhHHHHHHHHHHHHHhhccccccccccccCCchH
Q 006171 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAP 440 (658)
Q Consensus 366 ~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~-----~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~ 440 (658)
|.+.+|++++.++..|.. + .+|||++.+. .++.+++++.++.+|+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-------~----~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk------------------- 51 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-------K----QLCIIAFLPHILDCQASCRNKYLEILKSVAE------------------- 51 (130)
T ss_pred CceEEecCHHHHHhhccC-------C----CeEEEEEcCccccCCHHHHHHHHHHHHHHHH-------------------
Confidence 567899999999989932 2 5999999873 2345677778877777
Q ss_pred HHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccc
Q 006171 441 AAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQE 520 (658)
Q Consensus 441 ~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~ 520 (658)
+|+++.+.|+|+|++.|..+++.|-.+. .+.|.++|+ |... -||. +
T Consensus 52 ---~~kgk~i~Fv~vd~~~~~~~~~~fgl~~------------~~~P~v~i~----~~~~--~KY~------~------- 97 (130)
T cd02983 52 ---KFKKKPWGWLWTEAGAQLDLEEALNIGG------------FGYPAMVAI----NFRK--MKFA------T------- 97 (130)
T ss_pred ---HhcCCcEEEEEEeCcccHHHHHHcCCCc------------cCCCEEEEE----eccc--Cccc------c-------
Confidence 8888889999999999999999883221 135999998 5433 1443 1
Q ss_pred cCccccchhccCCCCChhHHHHHHHHHhhcCCCCCCC
Q 006171 521 VDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLP 557 (658)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~l~ 557 (658)
+.|+-+.+.|.+|+.+++. |....++
T Consensus 98 ----------~~~~~t~e~i~~Fv~~~l~-Gkl~~~~ 123 (130)
T cd02983 98 ----------LKGSFSEDGINEFLRELSY-GRGPTLP 123 (130)
T ss_pred ----------ccCccCHHHHHHHHHHHHc-CCccccc
Confidence 1223366999999999998 6555555
No 131
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.87 E-value=1.3e-09 Score=113.00 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=48.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHcCC
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD 89 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~----------~~~~~f~~i~~Aye~L~d 89 (658)
..++|++|||++++|.+|||+|||+|+++||||++. .+.++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999853 145789999999999985
No 132
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.6e-09 Score=114.48 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=59.4
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhccccc
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY 99 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD~~ 99 (658)
..|||+|||+.+.++..|||+|||++++.||||++.++ +.+|+++-+||.+|+||.+|..||.-
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 68999999999999999999999999999999998744 44599999999999999999999975
No 133
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.82 E-value=1.3e-07 Score=92.04 Aligned_cols=169 Identities=14% Similarity=0.237 Sum_probs=122.4
Q ss_pred ChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCC-CCHhHHHHHH
Q 006171 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (658)
Q Consensus 171 l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~-rs~~~Lv~fv 249 (658)
+...|.++|+.+.+...++.+.-. ++|++++ +.. |+|++|+++.. ....|.|. .+.++|.+|+
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~------~~~~~~~------~~~-p~i~~~k~~~~---~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNE------ELAKKYG------IKE-PTIVVYKKFDE---KPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-H------HHHHHCT------CSS-SEEEEEECTTT---SEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHH------HHHHHhC------CCC-CcEEEeccCCC---CceecccccCCHHHHHHHH
Confidence 456899999999988888888733 2888888 767 99999998543 36889998 8999999999
Q ss_pred HHhhccCCcceeeccchhhhhhhhhcCCCcEEEEEEeCCCCC----CcHHHHHHHHhhccCceEEEEEecccccHhHHhh
Q 006171 250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNT 325 (658)
Q Consensus 250 ~k~v~~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~----~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~ 325 (658)
.+. .+|.+..++..+ ...+.... ..+.+++|.++... ....++.+|..+++.+.|+++... ....+++.
T Consensus 72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~ 144 (184)
T PF13848_consen 72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKY 144 (184)
T ss_dssp HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHH
T ss_pred HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHH
Confidence 988 578877777766 55555432 22355566532111 123345688889888888888644 23668899
Q ss_pred cCCC--CCCEEEEEeCCCCCe-eeecCCCChHHHHHHHHh
Q 006171 326 FEVE--SAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 326 f~V~--~~Ptlvlfk~~~~~p-~~y~g~~~~~~L~~fi~~ 362 (658)
+|++ ..|+++++.....+. ..+.+.++.+.|.+|++.
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 699999998544332 123788899999999863
No 134
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.78 E-value=2.8e-09 Score=105.13 Aligned_cols=102 Identities=12% Similarity=0.264 Sum_probs=87.8
Q ss_pred cceEEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCcccc
Q 006171 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.+++..++.+|+...+. .-|+++||||||+.|+.+.|.|+..|.--.+.. ++|.||.+.|+ +.+..|.
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---------gLsGRF~ 91 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---------GLSGRFL 91 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---------ccceeeE
Confidence 34789999999987774 359999999999999999999999998777765 99999999776 4445667
Q ss_pred eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|...|||.=.++|. ...|.|.|+.+++++|+..+
T Consensus 92 vtaLptIYHvkDGe-----FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGE-----FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeeccc-----cccccCcccchhHHHHHHhh
Confidence 99999999999985 48999999999999999654
No 135
>PHA02125 thioredoxin-like protein
Probab=98.74 E-value=1e-08 Score=85.70 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=51.3
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y 236 (658)
+|.||||||++|+.+.|.+++++ ..+..||+++++ +++++++ |+++||++ .|.. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcC------CceeCeEE---CCEE----EEEE
Confidence 78999999999999999997653 357889988544 5899998 88999998 3322 2355
Q ss_pred cC-CCCHhHHHH
Q 006171 237 EG-ELSVDAVTD 247 (658)
Q Consensus 237 ~G-~rs~~~Lv~ 247 (658)
.| +++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 66 344455543
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.73 E-value=2.4e-08 Score=100.64 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=67.5
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~ 232 (658)
+.+.++.||++||++|+.+.|.+++++.+ .+.+.+..||.++++ .++++++ |.++||++++.+|
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~---~~~~~~~------V~~vPtl~i~~~~------ 196 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP---DLAEKYG------VMSVPKIVINKGV------ 196 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH---HHHHHhC------CccCCEEEEecCC------
Confidence 34455559999999999999999999987 355678899999554 5899999 8899999998765
Q ss_pred cccccCCCCHhHHHHHHHH
Q 006171 233 MTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 233 ~~~Y~G~rs~~~Lv~fv~k 251 (658)
..|.|..+.+.|++|+.+
T Consensus 197 -~~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 197 -EEFVGAYPEEQFLEYILS 214 (215)
T ss_pred -EEEECCCCHHHHHHHHHh
Confidence 237899999999999865
No 137
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.72 E-value=9.5e-09 Score=93.57 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceee--eeEEEEcC-CCC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~--yPTl~~f~-~g~ 227 (658)
.+++++||.|||+||++|+.+.|.+.+.+.......++..||.+.+.. .+.+.++ +.+ +||+++|. +|.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence 468999999999999999999999999877654434677777764331 1345555 655 99999996 554
Q ss_pred CCCCCcccccCCCCHhHHHHHH
Q 006171 228 KSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
. ........|.++.+.+.+++
T Consensus 89 ~-~~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 89 V-HPEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred C-chhhccCCCCccccccCCCH
Confidence 3 11122344555544444433
No 138
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.69 E-value=2e-08 Score=84.26 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y 236 (658)
-|.||++||++|+.+.|.++++++++.....+..|| + . . .+.+++ |.+.|||++ +|.. .+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~-~-~---~a~~~~------v~~vPti~i--~G~~------~~ 61 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D-M-N---EILEAG------VTATPGVAV--DGEL------VI 61 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C-H-H---HHHHcC------CCcCCEEEE--CCEE------EE
Confidence 389999999999999999999999997666787777 1 1 2 366777 889999999 6643 26
Q ss_pred cCC-CCHhHHHHHH
Q 006171 237 EGE-LSVDAVTDWF 249 (658)
Q Consensus 237 ~G~-rs~~~Lv~fv 249 (658)
.|. .+.+.|.+++
T Consensus 62 ~G~~~~~~~l~~~l 75 (76)
T TIGR00412 62 MGKIPSKEEIKEIL 75 (76)
T ss_pred EeccCCHHHHHHHh
Confidence 775 3456776664
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.66 E-value=4.4e-08 Score=112.35 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=78.5
Q ss_pred CCCCCcccc----CCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccc-hhhhHHHhhCCCCcccce
Q 006171 143 SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (658)
Q Consensus 143 ~~nF~~~v~----~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~i~k~f~V 214 (658)
.++|++.+. ++++++|+|||+||++|+.++|.. .++.+.+++ ..+.+||++++ ....+++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 456666662 468999999999999999999875 677787864 57889999854 33456899998 8
Q ss_pred eeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 215 ~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
.++||+++|.++.+. .....+.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~-i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQE-IPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCC-cccccccCCCCHHHHHHHHHHh
Confidence 899999999743321 1124678999999999998764
No 140
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.63 E-value=3.5e-08 Score=95.61 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=54.0
Q ss_pred cCcccccCccCC--CCHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhhhcccc
Q 006171 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (658)
Q Consensus 37 ~d~Y~iLgv~~~--a~~~eIk~ayr~l~~~~HPD~~~~--~------~~~f~~i~~Aye~L~d~~~R~~YD~ 98 (658)
.|||++||+++. .+..+++++||+|.+++|||+... . .+.-..||+||.+|+||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 499999999987 889999999999999999997642 2 2347899999999999999998864
No 141
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.3e-08 Score=93.91 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=56.4
Q ss_pred CccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhhhccc
Q 006171 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYD 97 (658)
Q Consensus 35 ~~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Aye~L~d~~~R~~YD 97 (658)
+.-|+|+||.|.+..+.++||+.||+|++..|||+|+.+ ...|..+.+||..|-|+..|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 577999999999999999999999999999999999954 445999999999999998776544
No 142
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.57 E-value=4e-08 Score=87.98 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=61.0
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHH---HHHhhcccceeeeecccch-----------------hhhHHHhhCCCCc
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ 210 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~---A~~l~g~~~vg~Vdc~e~~-----------------~~~~Lc~k~~i~k 210 (658)
.++++.+|.|++|||++|+++.++..+. +..++....+..+++++.. ....+++.++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG--- 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence 3578999999999999999998888754 3444444577777776432 1235778888
Q ss_pred ccceeeeeEEEEcC-CCCCCCCCcccccCCCCHhHHHHHH
Q 006171 211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 211 ~f~V~~yPTl~~f~-~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
|+++||++++. +|.. ...+.|..+.++|.+++
T Consensus 80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 99999999996 4542 34678999999988764
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=1.8e-07 Score=90.48 Aligned_cols=92 Identities=10% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchh-------------------hhHHHhhCCCCcc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI 211 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~-------------------~~~Lc~k~~i~k~ 211 (658)
.+++++|.||++||++|+...|.+.++++++.+. +.+..|++++... ...+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4688999999999999999999999999999765 5888888874321 134666666
Q ss_pred cceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 212 f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|.++|+++++.+++. ....+.|..+.+.+.+++.+.
T Consensus 136 --v~~~P~~~lid~~g~---i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 136 --VGPLPTTFLIDKDGK---VVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CCCcCeEEEECCCCc---EEEEEeCCCCHHHHHHHHHHh
Confidence 889999988865543 345678999999999988653
No 144
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.45 E-value=2e-07 Score=89.16 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhhhccccc
Q 006171 49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY 99 (658)
Q Consensus 49 a~~~eIk~ayr~l~~~~HPD~~~~--------~~~~f~~i~~Aye~L~d~~~R~~YD~~ 99 (658)
.+..+|+++||+|+++||||+.+. +.+.+..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 478999999999999999997542 235699999999999999999999954
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.44 E-value=3.8e-07 Score=95.13 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=68.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--------hhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--------~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
.+++.||.||++||++|+.+.|.++++++++. +.|-.|+.+... ....++++++ |.++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 47899999999999999999999999999874 455556655321 1134778888 8899999999
Q ss_pred CC-CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 224 ~~-g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
.+ |+. ......|..+.+.|.+.+...
T Consensus 237 ~~~~~~---v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQ---FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCE---EEEEEeCCCCHHHHHHHHHHH
Confidence 87 432 123346889999999888654
No 146
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.43 E-value=4.1e-07 Score=81.58 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=45.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
++++++|.||++||++|++..|.++++++.+++.+.+..|.-++......++++++ +.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence 36899999999999999999999999998876555444442222223445777776 4466664
No 147
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.41 E-value=3.8e-07 Score=74.00 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=47.7
Q ss_pred EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
-++.||++||++|+.+.|.+++++.. .+.+.+..+|.++++ +++++++ |.++||+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~---~l~~~~~------i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFP---DLADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCH---hHHHHcC------CcccCEEEE
Confidence 36789999999999999999999765 345689999998554 4889998 889999865
No 148
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.36 E-value=3.3e-07 Score=84.21 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=54.9
Q ss_pred CCccccCCCcEEEEEeccCCCCCCCChH-HHH--HHHHHhhcccceeeeecccchhhhHHHhhCC--CCcccceeeeeEE
Q 006171 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPSL 220 (658)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P-~w~--~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~--i~k~f~V~~yPTl 220 (658)
|.....+++++||.|||+||+.|+.|.+ +|. ++++.+.....+.+||.++++. +++.+. ..+.|++.|+||+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCEE
Confidence 3444468999999999999999999987 343 4677776666777888875443 333210 0001228899999
Q ss_pred EEcCCCCC
Q 006171 221 VAFPPGCK 228 (658)
Q Consensus 221 ~~f~~g~~ 228 (658)
+++.+.+.
T Consensus 85 vfl~~~G~ 92 (124)
T cd02955 85 VFLTPDLK 92 (124)
T ss_pred EEECCCCC
Confidence 99976544
No 149
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.35 E-value=8.4e-07 Score=80.68 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=62.9
Q ss_pred cCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-----------------hhhhHHHh
Q 006171 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-----------------RLATHLAE 204 (658)
Q Consensus 142 t~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-----------------~~~~~Lc~ 204 (658)
+.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|...+++.. .....+++
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 87 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISA 87 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHH
Confidence 333333333356899999999999999999999999987742 112221111000 01124777
Q ss_pred hCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHH
Q 006171 205 RKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (658)
Q Consensus 205 k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~ 247 (658)
.++ |.++|+++++.+++. ...+.|..+.++|.+
T Consensus 88 ~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 88 RWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL 120 (123)
T ss_pred hCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence 777 889999999986643 356778888888764
No 150
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.33 E-value=1.2e-06 Score=83.61 Aligned_cols=93 Identities=12% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh---------hhHHH-hhCCCCcccceeeeeEEE
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHLA-ERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~---------~~~Lc-~k~~i~k~f~V~~yPTl~ 221 (658)
..+..+|.|||+||++|++..|..++++++++ ..|..|+.++... ...+. ..++. +.|.++||.+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iPTt~ 123 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTPATF 123 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCCeEE
Confidence 45566999999999999999999999998873 4555666653210 01122 22311 0288999999
Q ss_pred EcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
++...+. .....+.|..+.+.+.+.+.+
T Consensus 124 LID~~G~--~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 124 LVNVNTR--KAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEeCCCC--EEEEEeecccCHHHHHHHHHH
Confidence 9965322 012356899999988877654
No 151
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3e-07 Score=89.69 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=69.1
Q ss_pred EEe-cCCCCCccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCcccce
Q 006171 139 NVV-TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 139 ~~L-t~~nF~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
.-+ +.+.++..+ +....|+|+||+-|.+.|.+++|.|.+++.++.... ++|+||.+ ...+.+++|+++-.=.-
T Consensus 127 kyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 127 KYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGS 203 (265)
T ss_pred eeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCccc
Confidence 344 344455555 577899999999999999999999999999997655 99999999 55568889886433334
Q ss_pred eeeeEEEEcCCCCC
Q 006171 215 RGLPSLVAFPPGCK 228 (658)
Q Consensus 215 ~~yPTl~~f~~g~~ 228 (658)
+..||+++|.+|..
T Consensus 204 rQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 204 RQLPTYILFQKGKE 217 (265)
T ss_pred ccCCeEEEEccchh
Confidence 58999999999864
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.30 E-value=1.1e-06 Score=81.01 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=53.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccchh---------------------hhHHHhhCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP 207 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~~---------------------~~~Lc~k~~ 207 (658)
.++++||.||++||++|++..|.+.++.+++... +.|..|+.+.... ...+++.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4679999999999999999999999999988643 3566666653311 134666676
Q ss_pred CCcccceeeeeEEEEcCCCC
Q 006171 208 IGQIFFRRGLPSLVAFPPGC 227 (658)
Q Consensus 208 i~k~f~V~~yPTl~~f~~g~ 227 (658)
|.++||++++..++
T Consensus 97 ------v~~~P~~~lid~~G 110 (131)
T cd03009 97 ------IEGIPTLIILDADG 110 (131)
T ss_pred ------CCCCCEEEEECCCC
Confidence 88999999997443
No 153
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.28 E-value=1.5e-06 Score=97.61 Aligned_cols=91 Identities=20% Similarity=0.090 Sum_probs=66.9
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc-----cc-h-------------------hhhHHHh
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-----DI-R-------------------LATHLAE 204 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~-----e~-~-------------------~~~~Lc~ 204 (658)
..+++++|.|||+||++|++..|.+++++++++.. +.|..|+.+ ++ . ....+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 46789999999999999999999999999988632 344333321 00 0 1223666
Q ss_pred hCCCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 205 k~~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
.++ |+++||++++ ++|.. ...+.|..+.+.|..++..
T Consensus 134 ~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence 666 8999999665 56643 4677899999999999874
No 154
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.5e-07 Score=89.59 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=59.2
Q ss_pred ccCcccccCccC---CCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHHcCChhhhhcccccCch
Q 006171 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (658)
Q Consensus 36 ~~d~Y~iLgv~~---~a~~~eIk~ayr~l~~~~HPD~~-----~~~~~~f~~i~~Aye~L~d~~~R~~YD~~g~~ 102 (658)
..|+|.+||++. .++..+|.++.++.+.+||||+. .++.+-|..|++||++|+|+.+|..||.--.+
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 569999999985 58899999999999999999975 35678899999999999999999999976444
No 155
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.24 E-value=1.8e-06 Score=79.97 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccch-hh---------------------hHHHhhC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIR-LA---------------------THLAERK 206 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~~-~~---------------------~~Lc~k~ 206 (658)
.+++++|.||++||++|+...|.++++++.++.. +.|..|++++.. .. ..+++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988753 367677776432 11 1234444
Q ss_pred CCCcccceeeeeEEEEcCCCC
Q 006171 207 PIGQIFFRRGLPSLVAFPPGC 227 (658)
Q Consensus 207 ~i~k~f~V~~yPTl~~f~~g~ 227 (658)
+ |.++||++++..++
T Consensus 96 ~------v~~iPt~~lid~~G 110 (132)
T cd02964 96 K------VEGIPTLVVLKPDG 110 (132)
T ss_pred C------CCCCCEEEEECCCC
Confidence 4 99999999996543
No 156
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.24 E-value=1.4e-06 Score=76.80 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhh-cccceeeeecccc--hhh------------------hHHHhhCCCCcc
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RLA------------------THLAERKPIGQI 211 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~-g~~~vg~Vdc~e~--~~~------------------~~Lc~k~~i~k~ 211 (658)
+++++|.||++||++|+...+.+.++.++++ ..+.+..|+++.+ ... ..+++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG---- 94 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence 6899999999999999999999999999986 3458999999853 111 23556666
Q ss_pred cceeeeeEEEEcCCCC
Q 006171 212 FFRRGLPSLVAFPPGC 227 (658)
Q Consensus 212 f~V~~yPTl~~f~~g~ 227 (658)
+.++|+++++.+++
T Consensus 95 --~~~~P~~~l~d~~g 108 (116)
T cd02966 95 --VRGLPTTFLIDRDG 108 (116)
T ss_pred --cCccceEEEECCCC
Confidence 88999998886443
No 157
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.21 E-value=1.3e-06 Score=80.14 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=56.3
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-h-------------------hhhHHHhhCCCCcc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-------------------LATHLAERKPIGQI 211 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~-------------------~~~~Lc~k~~i~k~ 211 (658)
.+++++|.||++||++|++..|.++++++... +.|..|+.++. . ....+++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG---- 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence 46899999999999999999999999987752 44555553211 0 1123555555
Q ss_pred cceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHH
Q 006171 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (658)
Q Consensus 212 f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~L 245 (658)
|.++|+.+++ ++|.. ...|.|..+.+.|
T Consensus 98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 8899965555 56643 4567788876654
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.16 E-value=4.9e-06 Score=71.95 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=60.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
.+.+-+..|++|||++|....+.+++++.+. +.+.+..+|.++. ..++++++ |.++||+++ +|.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~---~e~a~~~~------V~~vPt~vi--dG~---- 74 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALF---QDEVEERG------IMSVPAIFL--NGE---- 74 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhC---HHHHHHcC------CccCCEEEE--CCE----
Confidence 3456788899999999999999999999765 4578999998844 45899999 889999975 553
Q ss_pred CcccccCCCCHhHHH
Q 006171 232 CMTRFEGELSVDAVT 246 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv 246 (658)
..+.|..+.+.++
T Consensus 75 --~~~~G~~~~~e~~ 87 (89)
T cd03026 75 --LFGFGRMTLEEIL 87 (89)
T ss_pred --EEEeCCCCHHHHh
Confidence 3456766666654
No 159
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.15 E-value=1.8e-05 Score=71.61 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=69.3
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEe--CCCCCCcHHHHHHHHhhcc---CceEEEEEecc---cccHhHHhhcCCC--CC
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA 331 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~--~~~~~~~~~~~~~A~~~~~---~~~f~~v~~~~---~~s~~l~~~f~V~--~~ 331 (658)
+++.+ +++++.... .+.|-|+. +-|.. .|.++.+|.+|.. .+.++.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 44444 566765432 35555666 54433 4777888877643 46677776532 2347899999999 89
Q ss_pred CEEEEEeCCC-CCeeeecCC-CChHHHHHHHHhh
Q 006171 332 PAIVFLKDPG-VKPVVYYGS-FNNSRLSEVMEQN 363 (658)
Q Consensus 332 Ptlvlfk~~~-~~p~~y~g~-~~~~~L~~fi~~~ 363 (658)
|||.+|++++ ..|..|.|. .+.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999873 467789996 9999999999875
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.09 E-value=8.8e-06 Score=75.19 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=81.9
Q ss_pred EecCCCCCccccCCCcEEEEEecc--CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCCCcccceee
Q 006171 140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (658)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FYap--wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~ 216 (658)
.++..+.+..+......++.|-.+ -+..+...+=+.+++++++.+. +++++||+++++ .|+.+|| |++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~---~LA~~fg------V~s 91 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE---AIGDRFG------VFR 91 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH---HHHHHcC------Ccc
Confidence 355667777776666666666654 3667888899999999999744 799999999554 5999999 889
Q ss_pred eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHhh
Q 006171 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (658)
Q Consensus 217 yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~v 253 (658)
+|||++|++|.. ...+.|.++.+.+.+|+.+.+
T Consensus 92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHHh
Confidence 999999999965 467789999999999998773
No 161
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.03 E-value=4.4e-05 Score=69.79 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=67.3
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEeCC------CC--CCcHHHHHHHHhh--ccCceEEEEEecccccHhHHhhcCCCCC
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~------~~--~~~~~~~~~A~~~--~~~~~f~~v~~~~~~s~~l~~~f~V~~~ 331 (658)
+++.+ +++.+... ..+.|++|... |. .+.|.+..+|..+ .+.+.|+.|.... ...|+++|+|.+.
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 34444 45555432 34667777431 33 3456666777777 6678888886543 4789999999999
Q ss_pred CEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
|||++|+++. ++.|.|..+.+.|.+|+++
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999874 4559999999999999975
No 162
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=6.2e-06 Score=80.83 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=48.6
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHH-HcCCh
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTDP 90 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~--~~~~~f~~i~~Aye-~L~d~ 90 (658)
-..||.+|||..+|+..+++.||.+|++++|||... .++++|.+|.+||. +|+.-
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999654 56788999999999 77643
No 163
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.6e-06 Score=96.12 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=47.4
Q ss_pred ccCcccccCccCC----CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCC
Q 006171 36 PPSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD 89 (658)
Q Consensus 36 ~~d~Y~iLgv~~~----a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d 89 (658)
..+-|+||.|+-+ -..+.||++|++|+.+|||||||+..++|.++++|||.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 4467999998743 34589999999999999999999999999999999999983
No 164
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.02 E-value=6.3e-06 Score=80.18 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=62.9
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-hhhhHHHhhCC-------------CCcccceeee
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKP-------------IGQIFFRRGL 217 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~~~~~Lc~k~~-------------i~k~f~V~~y 217 (658)
.+++++|.||++||++|++..|.++++++. + ..+..|+-++. ......+++++ +.+.|.+.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 578999999999999999999999988753 2 45555554321 11112222211 1234558999
Q ss_pred eEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 218 PTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|+.+++ ++|.. ...+.|..+.+++.+++.+.
T Consensus 139 P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 965555 66643 35567999999999988765
No 165
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.99 E-value=1.1e-05 Score=72.83 Aligned_cols=98 Identities=8% Similarity=0.175 Sum_probs=71.1
Q ss_pred CCCccc----cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
+|++.+ ..+++.+|.||++||..|+.+.. .| +++.+.++....+-++|.++. ....+++.++ +.++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCC
Confidence 455555 36899999999999999999875 45 345566655444555565532 3345888888 8899
Q ss_pred eEEEEcCC-CCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 218 PTl~~f~~-g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|++.++.+ ++. ....+.|..+.+.+.+-+.+.
T Consensus 78 P~~~~i~~~~g~---~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 78 PHIAIIDPRTGE---VLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CeEEEEeCccCc---EeEEEcCCCCHHHHHHHHHHH
Confidence 99999975 332 356778999999999888765
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.98 E-value=1.9e-05 Score=68.79 Aligned_cols=96 Identities=25% Similarity=0.402 Sum_probs=69.2
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEeCC----CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf 337 (658)
++.++ +++.+.. .+++.+|+|... |....|.+..++..+.+.+.|+.+... +...++++|+|.++|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 44444 5555553 245666666432 222456677788888777778887643 34789999999999999999
Q ss_pred eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 338 k~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
+++... ..|.|.++.+.|.+||++|
T Consensus 79 ~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 987543 3689999999999999875
No 167
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.98 E-value=1.4e-05 Score=78.75 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=63.5
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCC-------------Ccccceeee
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPI-------------GQIFFRRGL 217 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i-------------~k~f~V~~y 217 (658)
.+++++|.||++||++|++..|.++++++. + +.|..|+-++++ ......++++. .+.|.|.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999988652 2 356667654322 11112222211 124559999
Q ss_pred eEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 218 PTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
|+.+++ ++|.. ...+.|..+.+.+.+.+...
T Consensus 144 P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 144 PETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 975555 56643 46678999988888887665
No 168
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.97 E-value=1e-05 Score=76.41 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc--------cceeeeecccchh-hhHHHhhCC---------------
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRL-ATHLAERKP--------------- 207 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~--------~~vg~Vdc~e~~~-~~~Lc~k~~--------------- 207 (658)
.+++++|.|+|+||+.|++..|...++.+++++. +.|-.|+.+++.. ..+..++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999998877542 4666777663321 122222222
Q ss_pred CCcccceeeeeEEEEcCCCCC
Q 006171 208 IGQIFFRRGLPSLVAFPPGCK 228 (658)
Q Consensus 208 i~k~f~V~~yPTl~~f~~g~~ 228 (658)
+.+.|.|.++||++++.+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 112445889999999975543
No 169
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.92 E-value=9.6e-06 Score=70.29 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=50.3
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhh--cccceeeeecccch-hhhHHHhhCC---------------CCcccce
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIR-LATHLAERKP---------------IGQIFFR 214 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~--g~~~vg~Vdc~e~~-~~~~Lc~k~~---------------i~k~f~V 214 (658)
+++++|.|||+||++|++..|...++.+.++ +.+.|..|++++.. ...+..++.+ +.+.|.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998 55688888887431 1111222221 1124448
Q ss_pred eeeeEEEEcCCC
Q 006171 215 RGLPSLVAFPPG 226 (658)
Q Consensus 215 ~~yPTl~~f~~g 226 (658)
+++|+++++.++
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 888888887654
No 170
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.87 E-value=6.1e-05 Score=66.42 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=59.2
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC-h
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-N 353 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~-~ 353 (658)
++.+|.| .+. +....|.+..++..+.+.+.|+.+.... ..+++++|+|.++||+++|++++..+..|.|..+ .
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~ 97 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDA 97 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCH
Confidence 3555544 432 2335677788888887777788775332 3789999999999999999987566777999886 8
Q ss_pred HHHHHHH
Q 006171 354 SRLSEVM 360 (658)
Q Consensus 354 ~~L~~fi 360 (658)
+.|.+|+
T Consensus 98 ~~l~~~i 104 (104)
T cd03004 98 DSILEFI 104 (104)
T ss_pred HHHHhhC
Confidence 8888774
No 171
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.86 E-value=2.6e-05 Score=76.08 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=62.6
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch----------hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~----------~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
+|.||+.||++|++..|..++++++++ +.|-.|+.++.. ....+.+.++.- +.++||.+++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~----~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI----PVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC----CCCCCeEEEEeCC
Confidence 788999999999999999999999974 455556665331 112244556511 2699999999554
Q ss_pred CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+. .....+.|..+.+.|.+.+.+.
T Consensus 147 G~--i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 147 TL--EALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred Cc--EEEEEEECCCCHHHHHHHHHHH
Confidence 43 1123578999999998877665
No 172
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.85 E-value=1.4e-05 Score=89.30 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=71.5
Q ss_pred CCCccccC--CCcEEEEEeccCCCCCCCChHH-HHHHHHHhhcc-cceeeeecc-cchhhhHHHhhCCCCcccceeeeeE
Q 006171 145 DFPSIFHD--SKPWLIQVYSDGSYLCGQFSGA-WKTIAALLEGI-ANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPS 219 (658)
Q Consensus 145 nF~~~v~~--~~~~lV~FYapwC~~Ck~l~P~-w~~~A~~l~g~-~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPT 219 (658)
..++.+.+ +++++++|||+||-.||.+++. +.+.....+-. +..-++|-+ +++...++-++++ +-|.|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~------~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG------VFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC------CCCCCE
Confidence 34455533 3599999999999999999873 33222222222 377788887 4556667888888 889999
Q ss_pred EEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 220 l~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+++|..++.+ +..-.|..+++.+.+++++.
T Consensus 538 ~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 9999966543 23368999999999998775
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=2.8e-05 Score=95.42 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc---c--c-hh------------------hhHHHhhC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---D--I-RL------------------ATHLAERK 206 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~---e--~-~~------------------~~~Lc~k~ 206 (658)
.+++++|.|||+||++|++..|.++++++++++. +.|..|.+. + . .. ...+.+++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999765 345555431 1 0 00 11244444
Q ss_pred CCCcccceeeeeEEEEc-CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 207 ~i~k~f~V~~yPTl~~f-~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+ |.++||++++ ++|.. ...+.|....+.|.+++.+.
T Consensus 499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHH
Confidence 4 9999999999 56643 45678988889998888765
No 174
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.83 E-value=7.1e-05 Score=67.74 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=59.7
Q ss_pred CCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHH-hhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171 277 PHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (658)
Q Consensus 277 ~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~-~~f~V~~~Ptlvlfk~~~~~p~~y~g~~ 351 (658)
.+++.+|.| .+ .+....|.+..+|..+++.+.|+.|.... ...++ ++|+|.++|||++|+++. .+..|.|..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~ 104 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPM 104 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEEEEEECCc-cceEEeCCC
Confidence 445555555 32 23445788888999888777788875322 35688 589999999999998764 577899999
Q ss_pred ChHHHHHHH
Q 006171 352 NNSRLSEVM 360 (658)
Q Consensus 352 ~~~~L~~fi 360 (658)
+.+.|..|+
T Consensus 105 ~~~~i~~~~ 113 (113)
T cd03006 105 RAPYMEKFV 113 (113)
T ss_pred CHHHHHhhC
Confidence 999888763
No 175
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.82 E-value=3.2e-05 Score=59.58 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
++.||++||++|+++.+.+.++ ....+...+..++|++..........++ +.++|+++++.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 5789999999999999999998 4455566999999995543222223556 7799999999876
No 176
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.77 E-value=0.00012 Score=64.82 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=65.4
Q ss_pred hhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC--
Q 006171 268 GKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-- 341 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~-- 341 (658)
++..+.. .+++.+|.| .+ .|....+.+..++..+.+.+.|+.+.........++++|+|.++|++++|+++.
T Consensus 10 ~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 10 FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 4555543 245455555 33 233456778888888877777777765443356799999999999999999875
Q ss_pred --CCeeeecCCCChHHHHHHHH
Q 006171 342 --VKPVVYYGSFNNSRLSEVME 361 (658)
Q Consensus 342 --~~p~~y~g~~~~~~L~~fi~ 361 (658)
..+..|.|..+.+.|.+||.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 34566899999999999873
No 177
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.74 E-value=0.00014 Score=63.79 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=57.6
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~ 354 (658)
++.+|.| .+. +....|.+..+|..+.+.+.|+.|...+ ...++++|+|.++||+++|+++. ....|.|..+.+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~ 95 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKE 95 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHH
Confidence 4555555 332 2334678888999887777777776433 47899999999999999998764 455689999988
Q ss_pred HHHHH
Q 006171 355 RLSEV 359 (658)
Q Consensus 355 ~L~~f 359 (658)
.|.+|
T Consensus 96 ~l~~f 100 (101)
T cd03003 96 SLVKF 100 (101)
T ss_pred HHHhh
Confidence 88876
No 178
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.72 E-value=2.6e-05 Score=66.15 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=46.9
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~ 224 (658)
.+++++||.||++||+.|+.+.... .++.+.+........||.++.... . ++. ..++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~--~--~~~------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN--A--QFD------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH--H--HHH------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh--H--HhC------CccCCEEEEeC
Confidence 3789999999999999999998776 455555666678888888744321 1 111 24799999874
No 179
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.69 E-value=0.00022 Score=61.96 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=63.9
Q ss_pred hhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCee
Q 006171 266 SMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV 345 (658)
Q Consensus 266 ~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~ 345 (658)
+.++.|+... ..++|.+|.+.+......++.+|..+++.+.|+.+. +..+.+++++. .|++++|++.+..++
T Consensus 8 ~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 8 EELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 3356666432 234444665433333456677899898888888874 35677888875 589999998777788
Q ss_pred eecCCCChHHHHHHHHhh
Q 006171 346 VYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 346 ~y~g~~~~~~L~~fi~~~ 363 (658)
.|.|.++.+.|.+||..|
T Consensus 80 ~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 80 EYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCCCCCHHHHHHHHHhC
Confidence 899998889999999764
No 180
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.67 E-value=6.8e-05 Score=60.99 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=50.9
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~ 235 (658)
+..|+++||++|+++.+.+++. .+.+..+|.+++.. ...+++.++ +.++|++.+. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 5679999999999988877652 24778888885433 334677788 7799999985 32 2
Q ss_pred ccCCCCHhHHHHHH
Q 006171 236 FEGELSVDAVTDWF 249 (658)
Q Consensus 236 Y~G~rs~~~Lv~fv 249 (658)
..| .+.+.|.+|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 455 4677777775
No 181
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.66 E-value=0.00022 Score=63.49 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=61.5
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc------CceEEEEEecccccHhHHhhcCCCCC
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESA 331 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~------~~~f~~v~~~~~~s~~l~~~f~V~~~ 331 (658)
++.++ +++.++ .+++.+|.|. + .+....|.+..++..+++ .+.|+.+.... ..+++++|+|.++
T Consensus 6 l~~~~-f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~ 79 (108)
T cd02996 6 LTSGN-IDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY 79 (108)
T ss_pred cCHhh-HHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence 44444 455553 2346566553 3 233456777777766532 24556664322 3789999999999
Q ss_pred CEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 332 Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
||+++|+++......|.|..+.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999998764456689999999998885
No 182
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.65 E-value=0.00016 Score=71.46 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCC-----------CcccceeeeeEE
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI-----------GQIFFRRGLPSL 220 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i-----------~k~f~V~~yPTl 220 (658)
.+++++|.||++||+.|++..|...++.+... ..+..|+.++.....+.++++++ .+.|.|.+.|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 46799999999999999999999999876542 24444443322222233333332 134558899987
Q ss_pred EEcCCCCCCCCCcccccCCC-CHhHHHHHH
Q 006171 221 VAFPPGCKSSDCMTRFEGEL-SVDAVTDWF 249 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~r-s~~~Lv~fv 249 (658)
+++-+.+. ..+.|.. +.+.+-+.+
T Consensus 151 ~lID~~G~-----I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 151 VLLDQDGK-----IRAKGLTNTREHLESLL 175 (189)
T ss_pred EEECCCCe-----EEEccCCCCHHHHHHHH
Confidence 77654333 4455543 334444444
No 183
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.62 E-value=9.6e-05 Score=67.78 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=35.5
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeec
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc 193 (658)
.+++++|.||+.||+.|.+..|.++++.++++.. +.+..|++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4689999999999999999999999999999754 35556654
No 184
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.55 E-value=0.0006 Score=60.37 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=67.4
Q ss_pred eccchhhhhhhh-hcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171 262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (658)
Q Consensus 262 it~~~~~~~Fl~-~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~ 340 (658)
+++.+.++.|+. .. ..++|.+|.+........+..+|..+|+.+.|+... ...+.+.+++. .|+|+++++.
T Consensus 5 i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 5 INSERELQAFENIED--DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred cCCHHHHHHHhcccC--CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence 434444788885 33 234444665543333445677888898888887764 34577888875 6999999886
Q ss_pred CCCeeee-cCCCChHHHHHHHHhhc
Q 006171 341 GVKPVVY-YGSFNNSRLSEVMEQNK 364 (658)
Q Consensus 341 ~~~p~~y-~g~~~~~~L~~fi~~~~ 364 (658)
++.++.| .|.++.+.|.+||..++
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 6677779 88889999999999875
No 185
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.54 E-value=0.00078 Score=58.84 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=53.6
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
..+.+..++..+.+.+.|+.+... +...++++|+|.++|++++|+++...+..|.|..+.+.|.+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 36 LAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 456677778777777777777532 2467999999999999999998756677799999999999986
No 186
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.51 E-value=0.00042 Score=70.73 Aligned_cols=98 Identities=9% Similarity=-0.064 Sum_probs=65.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHH-hhCCCCc-----------
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLA-ERKPIGQ----------- 210 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc-~k~~i~k----------- 210 (658)
.+++++|.||++||+.|....|.++++.+++++.+ .|..|+|+ +.....+.+ +++++.=
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 46899999999999999999999999999998764 88888884 112233443 4443210
Q ss_pred ----ccc-------------eeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 211 ----IFF-------------RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 211 ----~f~-------------V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
.|. |.+.||..++-..++ ....|.|..+.+.|...+++.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk---Vv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK---VVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCc---EEEEECCCCCHHHHHHHHHHH
Confidence 011 223466666643332 346677887777777776654
No 187
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.50 E-value=0.00024 Score=64.07 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=73.5
Q ss_pred EEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHH-hhcc--cceeeeeccc--chhhhHHHhhCCCCcccc
Q 006171 139 NVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEGI--ANTGMVELGD--IRLATHLAERKPIGQIFF 213 (658)
Q Consensus 139 ~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l~g~--~~vg~Vdc~e--~~~~~~Lc~k~~i~k~f~ 213 (658)
+.|+.-+|+++|...+.+||.|=.-. +--.-.-+|.++|++ .+.. .-||.|...+ ++...+|+++|++.
T Consensus 7 v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~---- 80 (126)
T PF07912_consen 7 VPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID---- 80 (126)
T ss_dssp EEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S----
T ss_pred eeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC----
Confidence 78999999999998999999996432 112334689999944 3332 2566666542 23345699999954
Q ss_pred eeeeeEEEEcCCCCCCCCCcccc--cCCCCHhHHHHHHHHh
Q 006171 214 RRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~~~~~~~Y--~G~rs~~~Lv~fv~k~ 252 (658)
-..||.+++|..+.. .+..| .|+.++++|..|+.++
T Consensus 81 ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 368999999996543 57888 8999999999999876
No 188
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.48 E-value=0.0004 Score=62.10 Aligned_cols=97 Identities=9% Similarity=0.130 Sum_probs=62.0
Q ss_pred eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHh-hcCCCCCCEEE
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~-~f~V~~~Ptlv 335 (658)
++..+ ++.........++.++.| .+ .|....+.+..++..|++. +.++.+.... +...++. .|+|..+||++
T Consensus 6 ~~~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 6 LSRAE-IEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred ccHHH-HHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEE
Confidence 34333 444443222334555555 33 2334467777788888753 5666665322 1245676 59999999999
Q ss_pred EEeCCCCCeeeecCC-CChHHHHHHH
Q 006171 336 FLKDPGVKPVVYYGS-FNNSRLSEVM 360 (658)
Q Consensus 336 lfk~~~~~p~~y~g~-~~~~~L~~fi 360 (658)
+|++++..+..|.|. .+..+|..||
T Consensus 84 ~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 84 FFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999887777789985 7888888774
No 189
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00028 Score=73.01 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=71.4
Q ss_pred eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf 337 (658)
+|..++....+... ...|+++.| .+ .|....|.+..++.+|++.+.++.|+... ++.+..+|||.+.||+++|
T Consensus 28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcCcCCeEEEe
Confidence 45555444444433 344555555 33 33446788888999999999988885322 4789999999999999999
Q ss_pred eCCCCCeee-ecCCCChHHHHHHHHhh
Q 006171 338 KDPGVKPVV-YYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 338 k~~~~~p~~-y~g~~~~~~L~~fi~~~ 363 (658)
++| .|+. |.|....+.++.|+..+
T Consensus 105 ~dG--qpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 105 KDG--QPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred eCC--cCccccCCCCcHHHHHHHHHHh
Confidence 987 5664 89998888999999874
No 190
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.42 E-value=0.00027 Score=61.33 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=53.6
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecc-cchhhhHHHhhCCCCcccceeeeeEEEEcCCCC
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~-e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~ 227 (658)
+.+.+|.||++||++|+.+.|...++++++.....+..+|.. .++. +...++.. +..+|++.++.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~----~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGVA----VRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhhh----hccCCeEEEEeCcc
Confidence 778999999999999999999999999999876678888885 3332 44554411 56889999888774
No 191
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.42 E-value=0.00081 Score=59.78 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=63.8
Q ss_pred cchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE------
Q 006171 264 KESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL------ 337 (658)
Q Consensus 264 ~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf------ 337 (658)
+.+.++.|+.. ...++|-+|.+..+.....+..+|..+|+.+.|+... ...+.+++++ .|++++|
T Consensus 7 s~~~l~~f~~~--~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEKFLSD--DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHHHhcc--CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechhhh
Confidence 33336777753 2334444666544334456677888888888888764 3567888998 6889999
Q ss_pred eCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 338 k~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
+..+...++|.|+++.+.|.+||..+
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 44556667799999989999999875
No 192
>smart00594 UAS UAS domain.
Probab=97.41 E-value=0.00034 Score=64.09 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCCccc----cCCCcEEEEEeccCCCCCCCChH-HHH--HHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P-~w~--~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
+|++.+ ..+++.+|.|+++||..|+.+.- +|. ++.+.++....+-.+|.+... ...+++.++ +.+|
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~------~~~~ 87 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYK------LDSF 87 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcC------cCCC
Confidence 455554 36789999999999999999875 242 344555544455556655332 345899988 8899
Q ss_pred eEEEEcCCCCCC--CCCcccccCCCCHhHHHHHH
Q 006171 218 PSLVAFPPGCKS--SDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 218 PTl~~f~~g~~~--~~~~~~Y~G~rs~~~Lv~fv 249 (658)
|++.++.+.... ........|..+.+.|+.++
T Consensus 88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999544310 01234568999999998875
No 193
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.39 E-value=0.0001 Score=68.05 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=44.2
Q ss_pred CCCccc----cCCCcEEEEEeccCCCCCCCChHH-H--HHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeee
Q 006171 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGA-W--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (658)
Q Consensus 145 nF~~~v----~~~~~~lV~FYapwC~~Ck~l~P~-w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~y 217 (658)
+|++.+ .++++++|.||++||++|+.|... | .++++.++....+..++.+. ...++.. . ..++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~--td~~~~~-~-------g~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHET--TDKNLSP-D-------GQYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEecc--CCCCcCc-c-------Cccc
Confidence 566655 378999999999999999999875 3 23344443322222344331 1111111 1 3489
Q ss_pred eEEEEcCCCC
Q 006171 218 PSLVAFPPGC 227 (658)
Q Consensus 218 PTl~~f~~g~ 227 (658)
||++++.+..
T Consensus 81 PtivFld~~g 90 (130)
T cd02960 81 PRIMFVDPSL 90 (130)
T ss_pred CeEEEECCCC
Confidence 9999996554
No 194
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.39 E-value=0.0011 Score=57.62 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=59.0
Q ss_pred CcEEEEEEe-CC---CCCCcHHHHHHHHhhcc--CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171 278 HKVKVIFFS-KT---GERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (658)
Q Consensus 278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~ 351 (658)
+++.++.|. +. +....+.+..++..+.. .+.++.+.. .....++++|+|...|++++|++++. +..|.|..
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~ 89 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGR 89 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCC
Confidence 445566553 32 22335666677777765 355555542 22478999999999999999998765 77799999
Q ss_pred ChHHHHHHHHhh
Q 006171 352 NNSRLSEVMEQN 363 (658)
Q Consensus 352 ~~~~L~~fi~~~ 363 (658)
+.+.|.+||+++
T Consensus 90 ~~~~l~~~i~~~ 101 (102)
T TIGR01126 90 DLEAIVEFVNEK 101 (102)
T ss_pred CHHHHHHHHHhc
Confidence 999999999874
No 195
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.36 E-value=0.00069 Score=75.49 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=68.6
Q ss_pred eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl 336 (658)
+++.+ ++..+.....+++.+|.| .+ .|....|.+..+|..|.+. +.|+.|..........+++|+|.++||+++
T Consensus 356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 55555 566664222445555544 33 2334567788888888654 667777644322233457899999999999
Q ss_pred EeCCCCCeeeec-CCCChHHHHHHHHh
Q 006171 337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (658)
Q Consensus 337 fk~~~~~p~~y~-g~~~~~~L~~fi~~ 362 (658)
|+++...++.|. |..+.+.|..||+.
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999877888897 57899999999975
No 196
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.34 E-value=0.00059 Score=60.19 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=57.3
Q ss_pred CCcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171 277 PHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (658)
Q Consensus 277 ~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~ 352 (658)
.+++.+|.|. . .|....|.+..++..|.+ +.|+.+...+ ....++++|+|.++||+++|+++ ....|.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~ 92 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRT 92 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCC
Confidence 3456566553 2 234457888888888764 5555553220 34789999999999999999876 5667999999
Q ss_pred hHHHHHHH
Q 006171 353 NSRLSEVM 360 (658)
Q Consensus 353 ~~~L~~fi 360 (658)
.+.|.+|+
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99988885
No 197
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.32 E-value=0.00053 Score=65.15 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=36.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~ 194 (658)
.+++++|.|+|.||+ |..-.|.++++.+++++. +.|..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 368999999999999 999999999999999754 377777764
No 198
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.29 E-value=0.001 Score=66.27 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=45.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHHhhCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAERKPI 208 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc~k~~i 208 (658)
.++++||.|+|.||+.|++-.|..+++.+++++.+ .|..|+|+ ........++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 46899999999999999999999999999998764 88889884 22334556777663
No 199
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.27 E-value=0.0012 Score=62.78 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=37.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeec
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVEL 193 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc 193 (658)
.+++++|.|+|+||+.|++-.|...++.++++... .|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 36789999999999999999999999999998654 8888887
No 200
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.25 E-value=0.002 Score=66.06 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=81.4
Q ss_pred hhhhhhhcCCCcEEEEEEe---CCCCCCcHHHHHHHHhhccCceEEEEEeccccc-HhHHhhcCCCCCCEEEEEeCCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS---KTGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK 343 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~---~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s-~~l~~~f~V~~~Ptlvlfk~~~~~ 343 (658)
.++|+....+..|.|-|+. .+|++..|.|..+...+++.-.-..|..-+|+. +.++.+|+|.++|||.+||.+ .
T Consensus 34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~ 111 (468)
T KOG4277|consen 34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--H 111 (468)
T ss_pred hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--e
Confidence 4678877777889888884 477888999988666555443334454456655 789999999999999999864 4
Q ss_pred eeeecCCCChHHHHHHHHhhccCCCccccCcc
Q 006171 344 PVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (658)
Q Consensus 344 p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~ 375 (658)
...|.|..+.++|.+|...-.-+++-.+.+..
T Consensus 112 a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 112 AIDYRGGREKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred eeecCCCccHHHHHHHHHhcccceeeecChhH
Confidence 55699999999999999888888777776633
No 201
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.24 E-value=0.0027 Score=58.86 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=68.5
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCC------CCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC
Q 006171 268 GKNFLAKTGPHKVKVIFFSKTGE------RASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~------~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~ 340 (658)
++.|+.... ..|||+.+... .....+..++.+|.+ .+.|+.|.... .+.|+.+|||.+.||+++|+++
T Consensus 27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence 788886543 56777754321 124566778998863 47788886443 5789999999999999999987
Q ss_pred CCCeeeecCCCChHHHHHHHHhhccCCCc
Q 006171 341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (658)
Q Consensus 341 ~~~p~~y~g~~~~~~L~~fi~~~~~~~vP 369 (658)
.. .-...|..+.+.+.++|+...-.-.|
T Consensus 102 k~-v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 102 NY-RGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EE-EEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 43 23467888999999999875444333
No 202
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00054 Score=59.83 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=43.5
Q ss_pred cccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 006171 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (658)
Q Consensus 41 ~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~ 90 (658)
.||||+++++.+.||+|+|++....|||+. ++.-.-.+||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999987 5556677899999999754
No 203
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0012 Score=61.98 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=62.7
Q ss_pred cEEEEEEeC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH
Q 006171 279 KVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (658)
Q Consensus 279 ~v~vl~f~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~ 355 (658)
.|.|-|+.. .|+...|.+..++..|.+.+.|+.+++.+ ..+++.+|+|...||+++|++|+.. -.+.|..+.+.
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~ 139 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQ 139 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHH
Confidence 344445532 33456788999999999999999887543 4789999999999999999987543 34778888888
Q ss_pred HHHHHHhh
Q 006171 356 LSEVMEQN 363 (658)
Q Consensus 356 L~~fi~~~ 363 (658)
|.++|++.
T Consensus 140 l~~~i~k~ 147 (150)
T KOG0910|consen 140 LRSLIKKF 147 (150)
T ss_pred HHHHHHHH
Confidence 99888763
No 204
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.15 E-value=0.00034 Score=57.76 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=38.3
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhh--CCCCcccceeeeeEEEEcCCC
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k--~~i~k~f~V~~yPTl~~f~~g 226 (658)
++.|+++||++|+++.+.+++..- .+-.+|.+++........+ ++ +.++|+| ++.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCC
Confidence 578999999999999988766532 3456787754432222222 25 7799998 46665
No 205
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.15 E-value=0.0022 Score=55.51 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=56.4
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (658)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~ 353 (658)
.++.+|.| .+ .+....+.+..++..+.+.+.++.+.... ...++++|+|.++|++++|+++. ....+.|..+.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~ 88 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAGQ-PVDGFQGAQPE 88 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCCE-EeeeecCCCCH
Confidence 34556655 33 23334666777887776666666665432 47899999999999999998543 33358898888
Q ss_pred HHHHHHHH
Q 006171 354 SRLSEVME 361 (658)
Q Consensus 354 ~~L~~fi~ 361 (658)
+.|.+|++
T Consensus 89 ~~l~~~l~ 96 (96)
T cd02956 89 EQLRQMLD 96 (96)
T ss_pred HHHHHHhC
Confidence 99988863
No 206
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.14 E-value=0.0032 Score=56.66 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=58.3
Q ss_pred hhhhhhhcCCCcEEEEEEeCC------CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFSKT------GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~------~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
++.+++ .+.+.|++|... +....|.+..+|..|.+.+.|+.+...+ .+.++.+|+|.+.||+++|+++.
T Consensus 20 ~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 20 LDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence 556653 334667777533 1224678888999988777787876443 57899999999999999999863
Q ss_pred CCeeeecCCCChHHHH
Q 006171 342 VKPVVYYGSFNNSRLS 357 (658)
Q Consensus 342 ~~p~~y~g~~~~~~L~ 357 (658)
......|..+.+.+.
T Consensus 95 -~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 -YVGVLAGIRDWDEYV 109 (111)
T ss_pred -EEEEEeCccCHHHHh
Confidence 222357877766543
No 207
>PLN02412 probable glutathione peroxidase
Probab=97.14 E-value=0.0019 Score=62.43 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=38.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~ 194 (658)
.+++++|.||++||+.|++-.|...++.+++++.. .|..|+|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 35899999999999999999999999999998764 88888885
No 208
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.12 E-value=0.00042 Score=64.94 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=54.7
Q ss_pred CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCCC------------Cccccee--
Q 006171 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (658)
Q Consensus 152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~i------------~k~f~V~-- 215 (658)
.+++.+|.||+. ||++|+.-.|..+++++.++.. +.+..|+.+.+....+.++++++ .+.|.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999999887665 46666666644334444444332 2244477
Q ss_pred -------eeeEEEEcCCCCC
Q 006171 216 -------GLPSLVAFPPGCK 228 (658)
Q Consensus 216 -------~yPTl~~f~~g~~ 228 (658)
++|+++++-..++
T Consensus 107 ~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSB
T ss_pred cccccCCeecEEEEEECCCE
Confidence 8998777654443
No 209
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.11 E-value=0.00088 Score=58.18 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=67.4
Q ss_pred CCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCC
Q 006171 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (658)
Q Consensus 146 F~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~ 225 (658)
.+..+..+++++|-|+.++|+ .....|.++|..+.....+|.+.-. .++++++ +. -|++.+|++
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~------~~~~~~~------~~-~~~i~l~~~ 73 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK------EVAKKLK------VK-PGSVVLFKP 73 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH------HHHHHcC------CC-CCceEEeCC
Confidence 344567899999999999887 5678999999999877788877733 2666665 54 499999987
Q ss_pred CCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 226 GCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
... ....|.|..+.++|.+|+..
T Consensus 74 ~~~---~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEE---EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccc---CCccCCCCCCHHHHHHHHHh
Confidence 532 34779999999999999864
No 210
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.11 E-value=0.00059 Score=57.03 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=52.9
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccccc
Q 006171 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (658)
Q Consensus 158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~ 237 (658)
|++++++|++|..+...+++++..+. +.+-.++.. ...++ .+|| |.+.|++++ +|. ..|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~---~~~~~-~~yg------v~~vPalvI--ng~------~~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE---DFEEI-EKYG------VMSVPALVI--NGK------VVFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT---THHHH-HHTT-------SSSSEEEE--TTE------EEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc---CHHHH-HHcC------CCCCCEEEE--CCE------EEEE
Confidence 56689999999999999999999883 555555554 33345 8888 889999954 453 5678
Q ss_pred C-CCCHhHHHHHHH
Q 006171 238 G-ELSVDAVTDWFA 250 (658)
Q Consensus 238 G-~rs~~~Lv~fv~ 250 (658)
| .-+.+.|..|++
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 8 677888888763
No 211
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.08 E-value=0.0022 Score=55.94 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=56.3
Q ss_pred CcEEEEEE-eCC---CCCCcHHHHHHHHhhcc--CceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCC
Q 006171 278 HKVKVIFF-SKT---GERASPFVRQISRNYWA--YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS 350 (658)
Q Consensus 278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~--~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~ 350 (658)
.++.++.| .+. +....+.+..++..+.. .+.++.+.. .. ...++++|+|.++|++++|++++..+..|.|.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~--~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA--DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEEC--CCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCc
Confidence 34555555 332 23346777778877752 344555432 23 46899999999999999999876666678999
Q ss_pred CChHHHHHHH
Q 006171 351 FNNSRLSEVM 360 (658)
Q Consensus 351 ~~~~~L~~fi 360 (658)
.+.+.|.+|+
T Consensus 96 ~~~~~l~~~i 105 (105)
T cd02998 96 RDLEDLVKFV 105 (105)
T ss_pred cCHHHHHhhC
Confidence 9998888874
No 212
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.04 E-value=0.0031 Score=56.65 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=57.4
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171 278 HKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (658)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~ 352 (658)
+++.+|.| .+ .|....|.+..++..+.+ .+.++.|.... ...++++++|.++||+++|+++ .....+.|..+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~ 100 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVPAIVGIING-QVTFYHDSSFT 100 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCCEEEEEECC-EEEEEecCCCC
Confidence 45656655 33 233346777778888764 36667664322 4679999999999999999865 33334588888
Q ss_pred hHHHHHHHHh
Q 006171 353 NSRLSEVMEQ 362 (658)
Q Consensus 353 ~~~L~~fi~~ 362 (658)
.+.|.+||++
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 8999999864
No 213
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.03 E-value=0.0029 Score=55.20 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=55.0
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccC--ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC-CCeeeecCCC
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSF 351 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~--~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~-~~p~~y~g~~ 351 (658)
++.+|+| .+. +....+.+..++..+.+. +.|+.+. ++..+++..+++.++|++++|+++. ..+..|.|..
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~ 95 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDR 95 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCc
Confidence 4445544 332 233467777788877653 4555553 4445688899999999999999876 4566689999
Q ss_pred ChHHHHHHH
Q 006171 352 NNSRLSEVM 360 (658)
Q Consensus 352 ~~~~L~~fi 360 (658)
+...|.+||
T Consensus 96 ~~~~l~~fi 104 (104)
T cd02995 96 TLEDLIKFI 104 (104)
T ss_pred CHHHHHhhC
Confidence 988888875
No 214
>PLN02309 5'-adenylylsulfate reductase
Probab=97.03 E-value=0.0022 Score=71.53 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=67.4
Q ss_pred eccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhhccC-ceEEEEEecccccHhHHh-hcCCCCCCEEE
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~-~f~V~~~Ptlv 335 (658)
++.++ +++.+.....+++.+|.| .+ .|....+.+..++..|... +.|+.+.... +...+++ +|+|.++|||+
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence 45544 455554323345555545 33 2334567777888887543 6677775431 2356775 69999999999
Q ss_pred EEeCCCCCeeeecC-CCChHHHHHHHHh
Q 006171 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (658)
Q Consensus 336 lfk~~~~~p~~y~g-~~~~~~L~~fi~~ 362 (658)
+|+++...++.|.| ..+.+.|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99998888888975 6899999999986
No 215
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.99 E-value=0.0026 Score=61.52 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=64.0
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccc--------hhhhHHHhhCCC------------Cc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDI--------RLATHLAERKPI------------GQ 210 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~--------~~~~~Lc~k~~i------------~k 210 (658)
.++++||.||++||+.|.+..|...++.++++.. +.|..|.++.. ....+..+++++ .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5688999999999999999999999999999743 57778877531 111222222221 22
Q ss_pred ccceeeeeEEEEcCCCCCCCCCcccccC-----------CCCHhHHHHHHHHh
Q 006171 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATA 252 (658)
Q Consensus 211 ~f~V~~yPTl~~f~~g~~~~~~~~~Y~G-----------~rs~~~Lv~fv~k~ 252 (658)
.|.|.+.|+++++.++++ ..|.| ..+...+.+-+...
T Consensus 104 ~~~v~~~P~~~lid~~G~-----v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK-----LVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCe-----EEEeecccCCcccccccccHHHHHHHHHHH
Confidence 444889999999865443 33332 23456677776665
No 216
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.98 E-value=0.014 Score=67.24 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=110.8
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
.+.+.|+.|+.+.|..|..+....++++ ++.+.+.+-..|..++ ..++++++ |...|++.++..+.. .
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~---~~~~~~~~------v~~~P~~~i~~~~~~--~ 432 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEE---PESETLPK------ITKLPTVALLDDDGN--Y 432 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccc---hhhHhhcC------CCcCCEEEEEeCCCc--c
Confidence 4556788899999999988887777777 4556667777777633 34888888 889999999953322 1
Q ss_pred CcccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEEE-EeCCC-CCCc--HHHHHHHHhhccC
Q 006171 232 CMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIF-FSKTG-ERAS--PFVRQISRNYWAY 306 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl~-f~~~~-~~~~--~~~~~~A~~~~~~ 306 (658)
....|.|--.=..+..|+...+. +.+... ++ ++ ..+.+... +..+.+-+ .+..| .|+. ..+..++... ..
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~-~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~ 507 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAAGPGQP-LG-EE-LLEKIKKI-TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PN 507 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhc-CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CC
Confidence 34788886666666666655321 112211 21 22 22333332 12233433 34433 3432 2223344432 23
Q ss_pred ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 307 ~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
+..-.+. ..+.++++++|+|-+.|++++ ++ + ..+.|..+.+++.+++
T Consensus 508 i~~~~i~--~~~~~~~~~~~~v~~vP~~~i---~~-~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 508 VEAEMID--VSHFPDLKDEYGIMSVPAIVV---DD-Q-QVYFGKKTIEEMLELI 554 (555)
T ss_pred ceEEEEE--CcccHHHHHhCCceecCEEEE---CC-E-EEEeeCCCHHHHHHhh
Confidence 3333332 223478999999999999988 33 2 3477888888777765
No 217
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.98 E-value=0.0026 Score=54.47 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=49.8
Q ss_pred CcHHHHHHHHhh--ccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 292 ASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 292 ~~~~~~~~A~~~--~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
..+.++.++..+ ...+.|+.+.... ...++++|+|...|++++|++++.....|.|..+.+.|.+|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 33 LAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred hhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 456666677777 4566666664322 478999999999999999998755666688888888887764
No 218
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.97 E-value=0.0045 Score=53.41 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=56.8
Q ss_pred cEEEEEE-eCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171 279 KVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (658)
Q Consensus 279 ~v~vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~ 354 (658)
++.+++| .+.+ ....+.++.++..+.+.+.|+.+.... ...++++|+|...|++++|+++.. ...+.|..+.+
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~ 91 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGKE-VDRSVGALPKA 91 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCcE-eeeecCCCCHH
Confidence 3445555 3322 223566677777776667777776432 467999999999999999976532 23467888888
Q ss_pred HHHHHHHhh
Q 006171 355 RLSEVMEQN 363 (658)
Q Consensus 355 ~L~~fi~~~ 363 (658)
.|.+|++++
T Consensus 92 ~l~~~l~~~ 100 (101)
T TIGR01068 92 ALKQLINKN 100 (101)
T ss_pred HHHHHHHhh
Confidence 999999763
No 219
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.96 E-value=0.0031 Score=54.90 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 291 RASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 291 ~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
...|.+..++..+.+ .+.|+.+... ....++++|+|..+||+++|+++. ....|.|..+.+.|.+||
T Consensus 33 ~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 33 RLAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred HhCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 346777778888765 4556655422 236799999999999999998654 445689999988888774
No 220
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.90 E-value=0.0044 Score=54.05 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=48.9
Q ss_pred CcHHHHHHHHhhc--cCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 292 ASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 292 ~~~~~~~~A~~~~--~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
..+.+..++..+. ..+.|+.+.........++++|+|.++|++++|+++. ....|.|..+.+.|.+|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 35 MKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred hCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 3566666776665 3455666654433357899999999999999998754 455689998888888774
No 221
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.88 E-value=0.0034 Score=55.30 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=45.6
Q ss_pred HHHhhccCceEEEEEecccc--cHhHHhhcCCCCCCEEEEEeC-CCCCeeeecCCCChHHHHHHH
Q 006171 299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 299 ~A~~~~~~~~f~~v~~~~~~--s~~l~~~f~V~~~Ptlvlfk~-~~~~p~~y~g~~~~~~L~~fi 360 (658)
++..+.+.+.+..+.+...+ ...++++|+|.+.||+++|+. ++..+..+.|.++.+.|.+++
T Consensus 39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 44555556666777654322 367999999999999999986 455666678988988888876
No 222
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.86 E-value=0.005 Score=53.81 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=56.1
Q ss_pred EEEEEEeCC---CCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHH
Q 006171 280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (658)
Q Consensus 280 v~vl~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~ 355 (658)
+.|.|+.+- |....|.+..++..+.. .+.|+.+... +...++++|+|.++||+++|+++. ...|.|..+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 555555432 33456777777776543 3566666533 246799999999999999998764 456899999999
Q ss_pred HHHHHHh
Q 006171 356 LSEVMEQ 362 (658)
Q Consensus 356 L~~fi~~ 362 (658)
|.+|+++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9999863
No 223
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.84 E-value=0.00093 Score=58.02 Aligned_cols=97 Identities=13% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccccee----eee
Q 006171 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP 218 (658)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~----~yP 218 (658)
..+|.+++....-+||.|...--..-..+ ..+.++|+.++|.+.++-|||.+. .-..||+++. |. .-|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~ 80 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP 80 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence 46788888888889998887644333333 489999999999999999999943 2456999987 44 233
Q ss_pred -EEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 219 -Tl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
+|+-|.+|.-+ .+|+-..+..+|+.|++.
T Consensus 81 ~~LkHYKdG~fH----kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDFH----TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCcc----ccccchhhHHHHHHHhhC
Confidence 36778888653 789999999999999864
No 224
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.82 E-value=0.0022 Score=64.71 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--------~~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
.++.-||.||.+.|+.|+.++|+...+++++. ..|-.|+.+.. .....++++++ |..+|++++.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 46788999999999999999999999999883 35555555421 11234777887 8899999999
Q ss_pred CCCCCCCCCcccccCCCCHhHHHH
Q 006171 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (658)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Lv~ 247 (658)
..+... ....-.|..+.++|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 876531 2222368888888875
No 225
>PRK09381 trxA thioredoxin; Provisional
Probab=96.80 E-value=0.0055 Score=54.39 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=59.0
Q ss_pred CcEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (658)
Q Consensus 278 ~~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~ 353 (658)
+++.++.| .+. |....|.++.++..+.+.+.|+.+.... ...++++|+|.+.||+++|+++. ....+.|..+.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~ 97 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSK 97 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCH
Confidence 34545544 432 2334677788888887777777776433 46789999999999999998653 22346888888
Q ss_pred HHHHHHHHhh
Q 006171 354 SRLSEVMEQN 363 (658)
Q Consensus 354 ~~L~~fi~~~ 363 (658)
+.|.+|+..+
T Consensus 98 ~~l~~~i~~~ 107 (109)
T PRK09381 98 GQLKEFLDAN 107 (109)
T ss_pred HHHHHHHHHh
Confidence 8999998764
No 226
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.73 E-value=0.0046 Score=54.05 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=57.9
Q ss_pred cEEEEEEeCC-C---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCC--CCCEEEEEeCCCCCeeee-cCCC
Q 006171 279 KVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSF 351 (658)
Q Consensus 279 ~v~vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y-~g~~ 351 (658)
++.+++|... + +...+.++.+|.+|++.+.|+.+...+ ...+++.|++. +.|++++++....+...+ .|.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 4556666432 2 233566777999999888888886433 36799999999 899999999842222224 3445
Q ss_pred ChHHHHHHHHh
Q 006171 352 NNSRLSEVMEQ 362 (658)
Q Consensus 352 ~~~~L~~fi~~ 362 (658)
+.+.|.+|++.
T Consensus 91 ~~~~l~~fi~~ 101 (103)
T cd02982 91 TAESLEEFVED 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 88999999975
No 227
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.71 E-value=0.0068 Score=57.05 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171 277 PHKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (658)
Q Consensus 277 ~~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~ 352 (658)
.+++.||.|.. .|....+.+..++..|.+.+.|..|.+.......++.+|+|..+|++++|..++..-..+.|..+
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 34566766642 22334667777887887667788876544333578999999999999999654433334688888
Q ss_pred hHHHHHHHHhh
Q 006171 353 NSRLSEVMEQN 363 (658)
Q Consensus 353 ~~~L~~fi~~~ 363 (658)
.+.|.+++...
T Consensus 99 ~~~l~~~l~~l 109 (142)
T cd02950 99 KQVLAQNLDAL 109 (142)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 228
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.69 E-value=0.012 Score=52.75 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=63.5
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEE----
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlf---- 337 (658)
+++.+.++.|+... +..++|.+|.+........+..+|..+|+.+.|+.+. ...+.+++++. .|.+++|
T Consensus 5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence 33434467776532 1234444666543323455677888898888887764 34677888886 5778888
Q ss_pred --eCCCCCeeeecCC-CChHH-HHHHHHhh
Q 006171 338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (658)
Q Consensus 338 --k~~~~~p~~y~g~-~~~~~-L~~fi~~~ 363 (658)
+..+.+..+|.|. .+..+ |.+|++.|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 5566777789888 67766 99999865
No 229
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.68 E-value=0.016 Score=52.20 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=43.5
Q ss_pred cEEEEEEcC----CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccC
Q 006171 396 WYCVILAGR----LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSE 471 (658)
Q Consensus 396 ~lcVi~~~~----~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~ 471 (658)
+++++++.. +.++.+.+++.++.+|+ ++|+.++.|+|+|.+.....++.|-..+
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk----------------------~fk~gki~Fv~~D~~~~~~~l~~fgl~~ 73 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAK----------------------DFPDRKLNFAVADKEDFSHELEEFGLDF 73 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHH----------------------HCcCCeEEEEEEcHHHHHHHHHHcCCCc
Confidence 366665532 34566788888888888 7873349999999987666777772221
Q ss_pred CcccccCCcCCCCCCCeEEEE
Q 006171 472 TSFETCGARRDMSDVPRLFIV 492 (658)
Q Consensus 472 ~~~~~c~~~~~~~~~p~vvI~ 492 (658)
+....|.++|+
T Consensus 74 ----------~~~~~P~~~i~ 84 (111)
T cd03073 74 ----------SGGEKPVVAIR 84 (111)
T ss_pred ----------ccCCCCEEEEE
Confidence 10125999988
No 230
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.64 E-value=0.0019 Score=58.44 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=42.5
Q ss_pred CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC
Q 006171 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (658)
Q Consensus 152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~ 206 (658)
.+++.+|.||+. ||++|+...+.+.++..+++.. +.+..|..+.......+++++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 568999999999 9999999999999999999864 377777776443333444443
No 231
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.61 E-value=0.0059 Score=61.95 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=53.7
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeee-cCCCChHHHHHHHHhhcc
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNSRLSEVMEQNKL 365 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y-~g~~~~~~L~~fi~~~~~ 365 (658)
..|.+..++..+.+.+.|+.+... ....++++|+|.++||+++|+++ +...| .|..+.+.|.+|+..+..
T Consensus 70 ~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 70 MAPAWERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCCCHHHHHHHHHHHHH
Confidence 467777788888777777776432 24789999999999999999965 33444 677899999999987653
No 232
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.59 E-value=0.0014 Score=68.08 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=69.0
Q ss_pred eEEEecC-CCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171 137 AFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 137 ~V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
.|..|+. +.|-+.|. ....++|.||.|.+..|..+...+..+|..+. .++|.+|... ... ++.+|+
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~---~~~-~~~~f~----- 195 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRAS---KCP-ASENFP----- 195 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEEC---GCC-TTTTS------
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehh---ccC-cccCCc-----
Confidence 4678865 67888883 34568899999999999999999999999874 4688888877 322 566777
Q ss_pred ceeeeeEEEEcCCCCCCCCCc---ccccC-CCCHhHHHHHHHHh
Q 006171 213 FRRGLPSLVAFPPGCKSSDCM---TRFEG-ELSVDAVTDWFATA 252 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~---~~Y~G-~rs~~~Lv~fv~k~ 252 (658)
+...|||++|++|... ... .+.-| ..+..+|-.|+.+.
T Consensus 196 -~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 -DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred -ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 7899999999988531 011 11112 45677777777765
No 233
>PRK10996 thioredoxin 2; Provisional
Probab=96.59 E-value=0.0087 Score=56.10 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=57.4
Q ss_pred CcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171 278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (658)
Q Consensus 278 ~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~ 353 (658)
+++.+|.|.. .+ ....+.+..++..+.+.+.|+.+... +...++++|+|.+.|++++|+++. ....+.|.++.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~G~-~v~~~~G~~~~ 128 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKNGQ-VVDMLNGAVPK 128 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEECCE-EEEEEcCCCCH
Confidence 4565666643 22 12345566677777666667666543 347899999999999999998643 33346888899
Q ss_pred HHHHHHHHhh
Q 006171 354 SRLSEVMEQN 363 (658)
Q Consensus 354 ~~L~~fi~~~ 363 (658)
+.|.+|+++.
T Consensus 129 e~l~~~l~~~ 138 (139)
T PRK10996 129 APFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 234
>PHA02278 thioredoxin-like protein
Probab=96.55 E-value=0.008 Score=53.42 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=54.7
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEecccc--cHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (658)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~--s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~ 351 (658)
+++.+|.| .+ .|....|.+..++..+.....|..+.+.... .+.++++|+|.+.||+++|+++. .-....|..
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~ 92 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV 92 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCC
Confidence 34556655 33 2334567777777765445567777654321 25799999999999999999863 323467877
Q ss_pred ChHHHHHHH
Q 006171 352 NNSRLSEVM 360 (658)
Q Consensus 352 ~~~~L~~fi 360 (658)
+.+.|.++-
T Consensus 93 ~~~~l~~~~ 101 (103)
T PHA02278 93 TPMQLQELE 101 (103)
T ss_pred CHHHHHhhh
Confidence 777777653
No 235
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.53 E-value=0.0017 Score=54.54 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=37.3
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh--hhHHHhhCCCCcccceeeeeEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~--~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++.|+++||++|+++.+.++++. ..+...+-.||-+++.. ...+.+..+ +.++|++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeEE
Confidence 47899999999999999988876 33223444444432211 123556666 77999984
No 236
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0021 Score=60.02 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=51.6
Q ss_pred ccCcccccCcc--CCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHHcCChhhhhccc
Q 006171 36 PPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYD 97 (658)
Q Consensus 36 ~~d~Y~iLgv~--~~a~~~eIk~ayr~l~~~~HPD~~~--------~~~~~f~~i~~Aye~L~d~~~R~~YD 97 (658)
+.+||.++|.. ...++.-++.-|.-..++.|||+.. .+++.-.++++||.+|+||.+|+.|=
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56899999755 4566777787899999999999632 25677999999999999999999986
No 237
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.40 E-value=0.018 Score=50.71 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=54.3
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccC---ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~---~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~ 351 (658)
++.+|.| .+. |....|.+..++..+++. +.++.+... ....++++|+|.++||+++|+++ ....|.|..
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~ 91 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT--AYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPR 91 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc--cCHhHHhhcCCccccEEEEEcCC--CceeecCCC
Confidence 3445544 332 233467777788777532 344444322 23689999999999999999754 345689999
Q ss_pred ChHHHHHHHHh
Q 006171 352 NNSRLSEVMEQ 362 (658)
Q Consensus 352 ~~~~L~~fi~~ 362 (658)
+.+.|.+|+++
T Consensus 92 ~~~~l~~~~~~ 102 (104)
T cd03000 92 TKDDIVEFANR 102 (104)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 238
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.31 E-value=0.0088 Score=55.33 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
+++++|.|| +.||+.|....|.+.++.+.+... +.+..|..+......+.+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 678999999 589999999999999999988754 3677776664444445555554
No 239
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.30 E-value=0.0084 Score=54.03 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=76.7
Q ss_pred EEEecCCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHH---hhcccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 138 V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~---l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
|.++|.+|++....+..+..+.||.+ ..-..+.+.++++|+. ++|.+.+..+|.++. ....+.+| +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fg------l 69 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLG------K 69 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcC------C
Confidence 35678888887777777777777733 2236788899999999 899999999999944 34778888 5
Q ss_pred ee--eeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 215 RG--LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 215 ~~--yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
++ +|.+.+...... ..+..+.+..+.++|.+|+.+.
T Consensus 70 ~~~~~P~i~i~~~~~~--~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 70 TPADLPVIAIDSFRHM--YLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CHhHCCEEEEEcchhc--CcCCCCccccCHHHHHHHHHHH
Confidence 55 999999876431 1122256889999999999876
No 240
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.27 E-value=0.026 Score=49.81 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=56.9
Q ss_pred hhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccc-cHhHHhhcCCCCCCEEEEEeCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV 342 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~-s~~l~~~f~V~~~Ptlvlfk~~~~ 342 (658)
+++.+... .+++.+|.|. +- |....|.+..++..| ..+.|+.+...... ...++++|+|.+.||+++|+++.
T Consensus 6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~- 82 (103)
T cd02985 6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE- 82 (103)
T ss_pred HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-
Confidence 34444432 3556666553 32 223467777788887 56777777644321 14799999999999999998753
Q ss_pred CeeeecCCCChHHHHHHHH
Q 006171 343 KPVVYYGSFNNSRLSEVME 361 (658)
Q Consensus 343 ~p~~y~g~~~~~~L~~fi~ 361 (658)
....+.|. ....|.+-+.
T Consensus 83 ~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 83 KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEEEeCC-CHHHHHHHHH
Confidence 34446775 4556665544
No 241
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.18 E-value=0.025 Score=49.81 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=54.9
Q ss_pred hhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~ 342 (658)
++.+++ .+++.+|.|. + .|....+.+..++..|.+ .+.|+.+.. +...++++|+|...||+++|+++..
T Consensus 10 ~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---d~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 10 WEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---DTIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred HHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---CCHHHHHHcCCCcCcEEEEEECCEE
Confidence 555554 3456666663 2 223345666667777753 245666643 3567899999999999999997532
Q ss_pred CeeeecCCCChHHHHHHHHh
Q 006171 343 KPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 343 ~p~~y~g~~~~~~L~~fi~~ 362 (658)
. ....| .+...|.++|.+
T Consensus 84 ~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 84 V-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred E-EEEec-CChHHHHHHHhh
Confidence 2 22355 477778888764
No 242
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.13 E-value=0.012 Score=55.88 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcc---cceeeeecccc----------------------hhhhHHHhhC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK 206 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~---~~vg~Vdc~e~----------------------~~~~~Lc~k~ 206 (658)
.++++.+.|-|-||+.|+.|.|...++-+.++.. .-|.=|.-+.+ ....+|+++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4689999999999999999999999988888765 23444443311 1222344444
Q ss_pred CCCcccceeeeeEEEEcCCCC
Q 006171 207 PIGQIFFRRGLPSLVAFPPGC 227 (658)
Q Consensus 207 ~i~k~f~V~~yPTl~~f~~g~ 227 (658)
+|.+.|++++..+.+
T Consensus 112 ------~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 ------EVKGIPALVILKPDG 126 (157)
T ss_pred ------ccCcCceeEEecCCC
Confidence 499999998887654
No 243
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.09 E-value=0.022 Score=49.54 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCcEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCC
Q 006171 277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (658)
Q Consensus 277 ~~~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~ 352 (658)
.+++.+++|.. .+ ....+.+..++..+.+.+.+..+... +..++.++++|.+.|++++|+++ ..-..+.|..+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~~g~~~ 88 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKDK-ELVKEISGVKM 88 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEECC-eEEEEEeCCcc
Confidence 34566666642 22 22345566677777655666666532 24679999999999999999864 33334678888
Q ss_pred hHHHHHHHH
Q 006171 353 NSRLSEVME 361 (658)
Q Consensus 353 ~~~L~~fi~ 361 (658)
.+.|.+|++
T Consensus 89 ~~~~~~~l~ 97 (97)
T cd02949 89 KSEYREFIE 97 (97)
T ss_pred HHHHHHhhC
Confidence 888888763
No 244
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.09 E-value=0.015 Score=57.17 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHH-hhc--ccceeeeecccch-hhhHHHh--------hCC-----------C
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIR-LATHLAE--------RKP-----------I 208 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l~g--~~~vg~Vdc~e~~-~~~~Lc~--------k~~-----------i 208 (658)
.+++++|+|+|.||+.|..-.|..++++.. +.- .-....||.++.. ....+.+ .++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999999642 211 0023667766421 0111111 111 1
Q ss_pred CcccceeeeeEE-EEcCCCCCCCCCcccccCCCCHhHHHH
Q 006171 209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD 247 (658)
Q Consensus 209 ~k~f~V~~yPTl-~~f~~g~~~~~~~~~Y~G~rs~~~Lv~ 247 (658)
.+.|.+.++|+- +++-..++ ....+.|..+.+.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~Gk---Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGK---VKFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCc---EEEEEeCCCCHHHHHH
Confidence 124558899776 45543332 3456689888877766
No 245
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.07 E-value=0.0094 Score=61.53 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc--------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~--------~~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
.++.-||.||..-|++|++++|+.+.+++.+. +.+-.|+.+.. +....++++++ |..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence 46688999999999999999999999999874 35555555532 11233677887 8899999998
Q ss_pred CCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
..+... ....=.|..+.++|.+=+...
T Consensus 221 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 221 NPKSQK--MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 776442 111125889999988765444
No 246
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.041 Score=49.22 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=60.2
Q ss_pred CcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (658)
Q Consensus 278 ~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~ 353 (658)
+++.|+.|.. .+....|.+..+|.+|.+ +.|..|.+.+ ..++++.++|...||+++||++... ..+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE-EEEecC-CH
Confidence 5677776632 334568999999999987 8899998765 6889999999999999999987543 335555 44
Q ss_pred HHHHHHHHhh
Q 006171 354 SRLSEVMEQN 363 (658)
Q Consensus 354 ~~L~~fi~~~ 363 (658)
..+.+.+..+
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5677766543
No 247
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.98 E-value=0.029 Score=58.21 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=78.8
Q ss_pred CcHHHHHHHHhhccCceEEEEE--eccccc-HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCC
Q 006171 292 ASPFVRQISRNYWAYASFAFVL--WREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL 368 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~--~~~~~s-~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~v 368 (658)
..|.+..+|..|++...-+.|- .++|+. ..|+.+|.|++|||+-+|+.|....-.|-|..+.+.|.+||+...--.+
T Consensus 31 L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 31 LKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred HhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence 4677777777776543322222 235655 6899999999999999999876544459999999999999998765556
Q ss_pred ccccCcchhhhcccccCCcCCCCCCcccEEEEEEc-CCChhHHHHHHHHHHHHHhhc
Q 006171 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLL 424 (658)
Q Consensus 369 P~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~-~~~~~~~~~~~~lr~~a~~~~ 424 (658)
-++.+.+..+.... ++| ...+.++- .++++++. ++++|.++.
T Consensus 111 ~Ef~sl~~l~n~~~------p~K----~~vIgyF~~kdspey~~----~~kva~~lr 153 (375)
T KOG0912|consen 111 NEFESLDQLQNLDI------PSK----RTVIGYFPSKDSPEYDN----LRKVASLLR 153 (375)
T ss_pred HHHHhHHHHHhhhc------ccc----ceEEEEeccCCCchHHH----HHHHHHHHh
Confidence 67777776653332 133 34455554 35556543 555565444
No 248
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.97 E-value=0.051 Score=48.98 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=49.6
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC-CeeeecCCCChHHHHHHHHh
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~-~p~~y~g~~~~~~L~~fi~~ 362 (658)
.+.+..++..+ +.+.|..+... +.+++.++|+|.+.||+++|++++. ..+.+.|..+..++.+|+..
T Consensus 41 ~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 41 KQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 56666677665 45667777643 2478999999999999999997643 33457887777888888765
No 249
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.97 E-value=0.021 Score=56.20 Aligned_cols=55 Identities=9% Similarity=-0.128 Sum_probs=42.5
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecc--------cchhhhHHHh-hCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAE-RKP 207 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~--------e~~~~~~Lc~-k~~ 207 (658)
.++++||.|+|.||+.|++ .|.++++.+++++.+ .|-.|.|. ......+.|+ +++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g 88 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG 88 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC
Confidence 4689999999999999976 779999999998754 88899984 2233445665 565
No 250
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.038 Score=57.56 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=80.1
Q ss_pred cceEEEecCCCCCcccc---CCCcEEEEEecc----CCCCCCCChHHHHHHHHHhhcc--------cceeeeecccchhh
Q 006171 135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRLA 199 (658)
Q Consensus 135 ~~~V~~Lt~~nF~~~v~---~~~~~lV~FYap----wC~~Ck~l~P~w~~~A~~l~g~--------~~vg~Vdc~e~~~~ 199 (658)
+..|+.+++++|.+.+. .+...+|+|.|- .|.-|++...+|.-+|...... +=++.||-++-+
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-- 116 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-- 116 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH--
Confidence 34689999999999993 456678889874 5999999999999999876321 148999999544
Q ss_pred hHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc---cCCCCHhHHHHHHHHh
Q 006171 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF---EGELSVDAVTDWFATA 252 (658)
Q Consensus 200 ~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y---~G~rs~~~Lv~fv~k~ 252 (658)
++-+.++ ++..|+|.+|++..........+ +-...++++.+|+.+.
T Consensus 117 -~~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 117 -QVFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred -HHHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 4778887 89999999996543321222222 2233499999999775
No 251
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.86 E-value=0.02 Score=51.78 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=46.9
Q ss_pred CcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 278 ~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
+++.||.|. + .|....|.+..+|.+|.+.+.|..|.+.+ .+++..+|+|.+.||+++||++.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence 456666663 2 23334688888999887777788887544 57899999999999999999864
No 252
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.86 E-value=0.04 Score=51.09 Aligned_cols=87 Identities=11% Similarity=0.161 Sum_probs=62.0
Q ss_pred CCcEEEEEEeCCC-C-------CCcHHHHHHHHhhccC-ceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCCCCee
Q 006171 277 PHKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPV 345 (658)
Q Consensus 277 ~~~v~vl~f~~~~-~-------~~~~~~~~~A~~~~~~-~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~~~p~ 345 (658)
.+.+++|.|-++. + .....++.+|.+|++. +.|+++...+ ...+.+.||+++ +|+++++...+.+..
T Consensus 19 ~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~ 96 (130)
T cd02983 19 EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFA 96 (130)
T ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCccc
Confidence 3568888775421 0 1233456699999988 8888886544 345999999964 999999987543433
Q ss_pred eecCCCChHHHHHHHHhhcc
Q 006171 346 VYYGSFNNSRLSEVMEQNKL 365 (658)
Q Consensus 346 ~y~g~~~~~~L~~fi~~~~~ 365 (658)
.+.|+++.+.|.+|++...-
T Consensus 97 ~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 97 TLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred cccCccCHHHHHHHHHHHHc
Confidence 36799999999999987533
No 253
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.82 E-value=0.015 Score=56.13 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=43.9
Q ss_pred CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
.+++++|.||+.| |+.|.+-.|.+.+++++++ .+.|..|+++........+++++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 3678999999999 9999999999999999984 45778888875444455677766
No 254
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.81 E-value=0.042 Score=49.55 Aligned_cols=47 Identities=9% Similarity=0.211 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
..|.+..++..|. .+.|..|.... ...+.++|+|...||+++|+++.
T Consensus 40 ~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~ 86 (113)
T cd02989 40 MDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGK 86 (113)
T ss_pred HHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCE
Confidence 4677777888775 46777776433 46799999999999999999874
No 255
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.81 E-value=0.036 Score=53.72 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=36.0
Q ss_pred CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeeccc
Q 006171 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (658)
Q Consensus 153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e 195 (658)
+++++|.|| +.||++|..-.|.+.++++++... +.+..|.++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 578999999 899999999999999999999754 3666677663
No 256
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.80 E-value=0.014 Score=59.85 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc--c------hhhhHHHhhCCCCcccceeeeeEEEEc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--I------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e--~------~~~~~Lc~k~~i~k~f~V~~yPTl~~f 223 (658)
.++.-||.||...|++|++++|+.+.+++.+.= .|-.|..+. . +.....+++++ |..+|++++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv 213 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLV 213 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEE
Confidence 466889999999999999999999999998742 333344331 1 11222556666 8899999999
Q ss_pred CCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 224 PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
..+..+ ....=.|..+.++|.+=+..
T Consensus 214 ~~~t~~--~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 214 DPKSGS--VRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHH
Confidence 776542 11112588898888775543
No 257
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.75 E-value=0.041 Score=54.18 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=36.5
Q ss_pred CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e 195 (658)
.+++++|.|| +.||+.|..-.|.+.++.++++... .|..|+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3578999999 9999999999999999999997543 677777663
No 258
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.73 E-value=0.035 Score=54.45 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=34.7
Q ss_pred CCc-EEEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecc
Q 006171 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (658)
Q Consensus 153 ~~~-~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~ 194 (658)
+++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 454 455668999999999999999999999875 478888874
No 259
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.71 E-value=0.013 Score=53.34 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=63.2
Q ss_pred cCCCcEEEEEecc----CCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 151 ~~~~~~lV~FYap----wC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
++.+..+|.+|+| ||..|+..- .=+++.+-+....-+-..|.+... -..+|..++ +++||++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPE-GYRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChH-HHHHHHHhC------CCCCCEEEEEEec
Confidence 3678999999999 888886532 112344455544455666665332 245888888 8899999888422
Q ss_pred CCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
...-.......|..++++|+..+...
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 11112345678999999999988765
No 260
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.70 E-value=0.048 Score=46.96 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=50.8
Q ss_pred hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~ 343 (658)
+++.+.... +++.++.|. +.+ ....+.+..++..+...+.|..+.. .+..+++++|+|.+.||+++|+++. .
T Consensus 5 ~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g~-~ 80 (97)
T cd02984 5 FEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNGT-I 80 (97)
T ss_pred HHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECCE-E
Confidence 344444332 355555553 322 2234555666666544555555542 2346799999999999999998652 2
Q ss_pred eeeecCCCChHHHHHHH
Q 006171 344 PVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 344 p~~y~g~~~~~~L~~fi 360 (658)
-..+.|. +...|.+.|
T Consensus 81 ~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEEeCC-CHHHHHHhh
Confidence 2223554 566666654
No 261
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.68 E-value=0.05 Score=49.35 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=48.3
Q ss_pred ccCceEEEEEeccc---ccHhHHhhcCCC--CCCEEEEEeCCCCCeeee--cCCCChHHHHHHHHhhccC
Q 006171 304 WAYASFAFVLWREE---ESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQ 366 (658)
Q Consensus 304 ~~~~~f~~v~~~~~---~s~~l~~~f~V~--~~Ptlvlfk~~~~~p~~y--~g~~~~~~L~~fi~~~~~~ 366 (658)
.+.+.++.|.+.+- ++.+|.++|++. .+|.+++|..+.+.|+.| +|+++.+.|+.|+++|.-.
T Consensus 52 ~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 52 SDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp -SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred CCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 35677888887663 458899999996 489999999888889988 8999999999999998443
No 262
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.044 Score=54.69 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=58.3
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCC
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~ 228 (658)
...+..++.|+++||..|+++.-..+.+|+.. ....+.+++.++ ...+|+.+. |...|+++++..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~------v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIA------VEAVPYFVFFFLGEK 82 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHH------HhcCceeeeeecchh
Confidence 46788899999999999999999999999988 556899999994 445888887 889999999977754
No 263
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.62 E-value=0.034 Score=49.91 Aligned_cols=59 Identities=12% Similarity=0.221 Sum_probs=41.9
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
.+.++.| .+. |....|.+..+|..|. .+.|..|...+ . .++++|+|.+.||+++|+++.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCCcCCEEEEEECCE
Confidence 5656655 332 2234577777888875 46777776543 2 799999999999999999864
No 264
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.60 E-value=0.019 Score=53.41 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCcEEEEE-eccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171 153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 153 ~~~~lV~F-YapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
+++++|.| .+.||+.|+.-.|.+.++.++++.. +.+..|+.+........+++.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 34555555 5999999999999999999999754 4788888775444334555554
No 265
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.58 E-value=0.12 Score=46.51 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=59.6
Q ss_pred EEEEEEcCCChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccc
Q 006171 397 YCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFET 476 (658)
Q Consensus 397 lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~ 476 (658)
+.++++ +.++.+..++.++.+|+.+. ++|++ +.|+|+|++.....++.|-.++
T Consensus 19 ~~~l~f--~~~~~~~~~~~~~~vAk~~~-------------------~~kgk-i~Fv~~d~~~~~~~~~~fgl~~----- 71 (111)
T cd03072 19 FLILFH--DKDDLESLKEFKQAVARQLI-------------------SEKGA-INFLTADGDKFRHPLLHLGKTP----- 71 (111)
T ss_pred eEEEEe--cchHHHHHHHHHHHHHHHHH-------------------hcCce-EEEEEEechHhhhHHHHcCCCH-----
Confidence 334555 45567888999999888322 27765 9999999987766777773222
Q ss_pred cCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHhh
Q 006171 477 CGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 549 (658)
Q Consensus 477 c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 549 (658)
++.|.++|. +...- .||. + + ++ .-+.+.|.+|+++++.
T Consensus 72 -------~~~P~i~i~----~~~~~-~Ky~---~--~---~~---------------~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 72 -------ADLPVIAID----SFRHM-YLFP---D--F---ED---------------VYVPGKLKQFVLDLHS 109 (111)
T ss_pred -------hHCCEEEEE----cchhc-CcCC---C--C---cc---------------ccCHHHHHHHHHHHhc
Confidence 246999988 33220 3444 1 1 11 2255899999999997
No 266
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.54 E-value=0.053 Score=45.14 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=50.9
Q ss_pred cEEEEEEeC-CC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171 279 KVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (658)
Q Consensus 279 ~v~vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~ 354 (658)
++.+++|.. .+ ....+.+..++.. ...+.|+.+.... ...+++.|++.+.|++++|+++. ....+.|..+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~ 86 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKE 86 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHH
Confidence 455665543 22 2234455555554 3456666665432 46799999999999999998764 333467877778
Q ss_pred HHHHHH
Q 006171 355 RLSEVM 360 (658)
Q Consensus 355 ~L~~fi 360 (658)
.|.+||
T Consensus 87 ~l~~~i 92 (93)
T cd02947 87 ELEEFL 92 (93)
T ss_pred HHHHHh
Confidence 888876
No 267
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.44 E-value=0.062 Score=52.49 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=53.5
Q ss_pred cEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeee--e----c
Q 006171 279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----Y 348 (658)
Q Consensus 279 ~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~--y----~ 348 (658)
.++||.|. +.+ ....+.+..+|..|. .+.|..|....+ .++.+|+|...||+++|+++...-.. + .
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g 159 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLVYKGGELIGNFVRVTEDLG 159 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence 36666553 322 223567777888874 578888865432 69999999999999999986422111 1 1
Q ss_pred CCCChHHHHHHHHhh
Q 006171 349 GSFNNSRLSEVMEQN 363 (658)
Q Consensus 349 g~~~~~~L~~fi~~~ 363 (658)
..++.+.|..++..+
T Consensus 160 ~~f~~~~le~~L~~~ 174 (175)
T cd02987 160 EDFDAEDLESFLVEY 174 (175)
T ss_pred CCCCHHHHHHHHHhc
Confidence 256777888877653
No 268
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.33 E-value=0.007 Score=55.17 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=44.6
Q ss_pred CCCcEEEEEec-------cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171 152 DSKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (658)
Q Consensus 152 ~~~~~lV~FYa-------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~ 224 (658)
++++.+|.|++ +||+.|....|..+++-........+..|...+.+.-.+-...|..+..+.|+++|||+-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 56889999995 59999999999999988776544566666665221111111111111135599999999997
Q ss_pred CC
Q 006171 225 PG 226 (658)
Q Consensus 225 ~g 226 (658)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 269
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.29 E-value=0.036 Score=52.43 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.7
Q ss_pred CCCcEEEEEecc-CCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 152 ~~~~~lV~FYap-wC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
.+++++|.||+. ||..|....+.+.++++.++.. +.+..|+.+........+++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 467899999975 6888999999999999999765 4677777764444444555554
No 270
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.24 E-value=0.034 Score=51.82 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=42.0
Q ss_pred CCCcEEEEEeccC-CCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCC
Q 006171 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 152 ~~~~~lV~FYapw-C~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
.++++++.||+.| |++|+.-.|.+.++.+++++ +.|..|+.+.........++++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence 3678999999998 69999999999999999864 4788888874333344555554
No 271
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.21 E-value=0.042 Score=63.44 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=62.0
Q ss_pred CCcEEEE-EeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 153 SKPWLIQ-VYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 153 ~~~~lV~-FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
+++.-|+ |++|+|++|.+..-.++++|.+.. .+..-.||.+++ .+++++|+ |.++|++++ ++.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~---~~~~~~~~------v~~vP~~~i--~~~---- 538 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHF---PDLKDEYG------IMSVPAIVV--DDQ---- 538 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECccc---HHHHHhCC------ceecCEEEE--CCE----
Confidence 4555454 579999999999999999998764 456778888854 45999999 889999886 342
Q ss_pred CcccccCCCCHhHHHHHH
Q 006171 232 CMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv 249 (658)
..|.|..+.+.|++++
T Consensus 539 --~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 --QVYFGKKTIEEMLELI 554 (555)
T ss_pred --EEEeeCCCHHHHHHhh
Confidence 4578988999998875
No 272
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.15 E-value=0.032 Score=52.16 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=40.8
Q ss_pred CcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhCC
Q 006171 154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 154 ~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
++++|.|| +.||+.|..-.|.+.++.++++.. +.+..|+.+........+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 67777777 999999999999999999999753 4777888774333344556554
No 273
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.99 E-value=0.072 Score=48.49 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.4
Q ss_pred HhHHhhcCCCCCCEEEEEeCC-CCCeeeecCCCChHHHHHHHHh
Q 006171 320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~-~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
..++.+|+|.+.||+++|.++ +.....+.|..+.+.+..+++.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 579999999999999999886 4444456888887888877665
No 274
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.98 E-value=0.027 Score=47.82 Aligned_cols=80 Identities=8% Similarity=0.083 Sum_probs=52.7
Q ss_pred EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcc
Q 006171 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (658)
Q Consensus 156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~ 234 (658)
-++.|+.|||++|++....+++++.++. .+.+..+|.+++.. ...+.+..+.+ +..+|+|. .+|..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------ 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence 3678999999999999999999887653 34677777774321 12344444422 56899975 35532
Q ss_pred cccCCCCHhHHHHHHHHh
Q 006171 235 RFEGELSVDAVTDWFATA 252 (658)
Q Consensus 235 ~Y~G~rs~~~Lv~fv~k~ 252 (658)
-| ..++|.++++..
T Consensus 69 --ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 --IG--GCTDFEAYVKEN 82 (85)
T ss_pred --Ec--CHHHHHHHHHHh
Confidence 22 347788877655
No 275
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.98 E-value=0.11 Score=51.42 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=60.0
Q ss_pred CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchh----------------------hhHHHhhCCC
Q 006171 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL----------------------ATHLAERKPI 208 (658)
Q Consensus 153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~----------------------~~~Lc~k~~i 208 (658)
++++++.|| +.||+.|..-.+.+.+...+++... .+..|.++.... ...+++.|++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 568889999 9999999999999999999997543 666666653211 1235555652
Q ss_pred Ccccceeee--eEEEEcCCCCCCCCCcc-cc--cCCCCHhHHHHHHHH
Q 006171 209 GQIFFRRGL--PSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFAT 251 (658)
Q Consensus 209 ~k~f~V~~y--PTl~~f~~g~~~~~~~~-~Y--~G~rs~~~Lv~fv~k 251 (658)
-.. -.+. |+.+++-+.+. ..+. .+ ...++++++...+..
T Consensus 111 ~~~--~~g~~~r~tfIID~~G~--I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 111 MRE--DEGLADRATFVVDPQGI--IQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred Ccc--cCCceeeEEEEECCCCE--EEEEEEeCCCCCCCHHHHHHHHHh
Confidence 100 0255 88888754432 0111 11 234788888887744
No 276
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.95 E-value=0.037 Score=51.21 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=37.1
Q ss_pred CCCcEEEEEeccCCCC-CCCChHHHHHHHHHhhcc----cceeeeecc
Q 006171 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG 194 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~-Ck~l~P~w~~~A~~l~g~----~~vg~Vdc~ 194 (658)
.+++++|.||++||+. |.+..|.++++.++++.. +.+..|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4679999999999997 999999999999999753 577777775
No 277
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.94 E-value=0.12 Score=46.60 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCcEEEEEEeCC----CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeee
Q 006171 277 PHKVKVIFFSKT----GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (658)
Q Consensus 277 ~~~v~vl~f~~~----~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y 347 (658)
..++.||-|+.. +....|.+..+|..|.+.+.|..|.+.+ .+++++.|+|..-||.++|+++.+-.+.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 467778877532 2224577888999887667777776543 57899999999999999999876555544
No 278
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=94.93 E-value=0.14 Score=48.30 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=56.8
Q ss_pred hhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEE-EEeCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGV 342 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlv-lfk~~~~ 342 (658)
+++.+... .+++.||-|. + .|....|.+..+|.++.+...|..|.+.+ .+++++.|+|.+.|+++ +||++..
T Consensus 14 ~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 14 VDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCeE
Confidence 45555433 4556666553 2 22335678888999887777777776543 57899999999765555 8887642
Q ss_pred Ceee-ecC--------CCChHHHHHHHHh
Q 006171 343 KPVV-YYG--------SFNNSRLSEVMEQ 362 (658)
Q Consensus 343 ~p~~-y~g--------~~~~~~L~~fi~~ 362 (658)
.+. ..| ..+.++|.+.++.
T Consensus 91 -~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 91 -MIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred -EEEEecccccccccccCCHHHHHHHHHH
Confidence 333 355 2355666666554
No 279
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.91 E-value=0.034 Score=44.75 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.2
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
++.|+++||++|.++.+.+++. .+.+..+|.+.+.. ...+.+..+ +.++|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5789999999999987766552 23666777764322 222433335 679999976
No 280
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.019 Score=51.60 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=55.3
Q ss_pred CCCCccc---cCCCcEEEEEec--------cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCccc
Q 006171 144 EDFPSIF---HDSKPWLIQVYS--------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (658)
Q Consensus 144 ~nF~~~v---~~~~~~lV~FYa--------pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f 212 (658)
+.|++.+ .+++..+|.|++ +||+.|.+..|...++-+.......|..|+..+.+.=...+..|. +.+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR--~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR--KDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc--cCC
Confidence 3455555 255569999995 799999999999999988665556888888875433222333332 333
Q ss_pred ce-eeeeEEEEcCC
Q 006171 213 FR-RGLPSLVAFPP 225 (658)
Q Consensus 213 ~V-~~yPTl~~f~~ 225 (658)
++ .++|||.=+.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 34 89999988774
No 281
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.81 E-value=0.069 Score=61.10 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=66.1
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
++..-+-.|++|.|++|.+......++|.. .+.+..-.||+.++ .+++++|+ |.++|++++ ++.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~---~~~~~~~~------v~~VP~~~i--~~~---- 178 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALF---QDEVEARN------IMAVPTVFL--NGE---- 178 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhC---HhHHHhcC------CcccCEEEE--CCc----
Confidence 345668889999999999999889888874 45667888888844 45999998 889999965 442
Q ss_pred CcccccCCCCHhHHHHHHHHh
Q 006171 232 CMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
..|.|..+.++|++.+.+.
T Consensus 179 --~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred --EEEecCCCHHHHHHHHhcc
Confidence 5678999999999888653
No 282
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.65 E-value=0.066 Score=49.35 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=41.7
Q ss_pred CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccchhhhHHHhhC
Q 006171 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (658)
Q Consensus 152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~~~~~Lc~k~ 206 (658)
.+++++|.|| +.||..|....|.+.++.+.++.. +.|..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4788999999 789999999999999999999543 478888876433333444554
No 283
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.51 E-value=0.11 Score=49.47 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=46.1
Q ss_pred hhhhhhhcCCCcEEEE-EEeCC---CCCCcHHHHHHHHhhcc-CceEEEEEecccccHhHHhhcCCCC------CCEEEE
Q 006171 268 GKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVF 336 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl-~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~v~~~~~~s~~l~~~f~V~~------~Ptlvl 336 (658)
+++.+... ...+.+| |+.+. +....|.+..++..+.+ .+.|+.|+... .++++++|+|.+ .||+++
T Consensus 38 f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 38 LEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEE
Confidence 44554332 2334455 44432 23346777778887753 47778876433 478999999987 999999
Q ss_pred EeCCC
Q 006171 337 LKDPG 341 (658)
Q Consensus 337 fk~~~ 341 (658)
|+++.
T Consensus 115 f~~Gk 119 (152)
T cd02962 115 FQGGK 119 (152)
T ss_pred EECCE
Confidence 99763
No 284
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.45 E-value=0.025 Score=55.08 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCCCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 143 ~~nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
..+|-..+....-+++.||-|.-..|+-+-...+.+|+..-+ .+|.+||+. ..+=||.+++ |+-.|++.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae---~~PFlv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAE---KAPFLVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecc---cCceeeeeee------eeEeeeEEE
Confidence 455666666677899999999999999999999999975422 289999999 4444899999 889999999
Q ss_pred cCCCCC
Q 006171 223 FPPGCK 228 (658)
Q Consensus 223 f~~g~~ 228 (658)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999864
No 285
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.24 E-value=0.08 Score=47.71 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=66.5
Q ss_pred EecCCCCCccccCCCcEEEEEe----ccCCCCCCCChHHHHHHHHHhh-cccceeeeecccchhhhHHHhhCCCCcccce
Q 006171 140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (658)
Q Consensus 140 ~Lt~~nF~~~v~~~~~~lV~FY----apwC~~Ck~l~P~w~~~A~~l~-g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V 214 (658)
++|.+|..... ..+.++-|| +..-..-..+...+.++|+.++ |.+.++.+|.++.. ...+.+| +
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fg------l 71 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFG------L 71 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcC------C
Confidence 45666655443 334455554 2222333567889999999999 68999999999443 3677888 5
Q ss_pred e--e--eeEEEEcCCCCCCCCCcccccCCC-CHhHHHHHHHHh
Q 006171 215 R--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (658)
Q Consensus 215 ~--~--yPTl~~f~~g~~~~~~~~~Y~G~r-s~~~Lv~fv~k~ 252 (658)
+ . +|++.++.....+ ....+.. +.++|.+|+.+.
T Consensus 72 ~~~~~~~P~~~i~~~~~~K----Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 72 DFSGGEKPVVAIRTAKGKK----YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CcccCCCCEEEEEeCCCCc----cCCCcccCCHHHHHHHHHHh
Confidence 5 4 9999998643221 1246778 999999999764
No 286
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.23 E-value=0.42 Score=42.34 Aligned_cols=97 Identities=14% Similarity=0.326 Sum_probs=60.5
Q ss_pred EEEEEEcC-CChhHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcC-CCcEEEEEEeccchHHHHHHHcccCCcc
Q 006171 397 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR-NKRLTFAWLDGEAQDRYCSFYLFSETSF 474 (658)
Q Consensus 397 lcVi~~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~v~F~wvd~~~q~~~~~~f~~~~~~~ 474 (658)
+.+++|.. .+++--++.+.++++|+ .++ ...++|+|||-+.-+-.+.+.-+....
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~----------------------~nt~np~LsiIWIDPD~FPllv~yWektF~I- 78 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVAR----------------------DNTDNPDLSIIWIDPDDFPLLVPYWEKTFGI- 78 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHH----------------------hcCcCCCceEEEECCccCchhhHHHHhhcCc-
Confidence 45666665 45555677888888888 332 366999999997766666665433332
Q ss_pred cccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHh
Q 006171 475 ETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 548 (658)
Q Consensus 475 ~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 548 (658)
+.. .|.|=|+ |.+- .... | ++..+.++ .+ +.++++.||+.+|
T Consensus 79 -------Dl~-~PqIGVV----~vtd--adSv---W--~~m~~~~d----------~~---t~~~Le~WiedVL 120 (120)
T cd03074 79 -------DLF-RPQIGVV----NVTD--ADSV---W--MEMDDDED----------LP---TAEELEDWIEDVL 120 (120)
T ss_pred -------ccC-CCceeeE----eccc--ccce---e--Eecccccc----------cC---cHHHHHHHHHhhC
Confidence 332 5999998 6664 2222 6 41111111 11 5689999999875
No 287
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.11 E-value=0.26 Score=40.83 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
..+.+..++..+...+.+..+... +..+++++|++.+.|++++ ++. ..+.|..+.+.|.+++..
T Consensus 17 ~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 17 AKRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHHHHHh
Confidence 355666677777655666776543 3567899999999999886 332 257888888888888765
No 288
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.04 E-value=0.12 Score=52.92 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHH-h---------hcc---------------------------cceeeeecc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EGI---------------------------ANTGMVELG 194 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~-l---------~g~---------------------------~~vg~Vdc~ 194 (658)
+.+..++.|.-|.|++|+++.++++++.+. + .|. ..+..-.|.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 567889999999999999999888775430 0 000 001111343
Q ss_pred c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHHh
Q 006171 195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
. -.....+|+++| |+|.|||+ |.+|. ...|..+.+.|.+++.+.
T Consensus 186 ~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 1 122334778887 89999999 66763 348989999999988653
No 289
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.89 E-value=0.073 Score=52.76 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHh--------------------------------hccc---ce--eeeecc
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--------------------------------EGIA---NT--GMVELG 194 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--------------------------------~g~~---~v--g~Vdc~ 194 (658)
+.++.++.|..|.|++|+++.+...+....+ .... .. ..-.|.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~ 155 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD 155 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence 4678999999999999999988876410000 0000 00 011233
Q ss_pred c-chhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHH
Q 006171 195 D-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDW 248 (658)
Q Consensus 195 e-~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~f 248 (658)
. -.....+++++| |++.|||+ |.+|. .+.|..+.+.|.++
T Consensus 156 ~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~ 196 (197)
T cd03020 156 NPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEAL 196 (197)
T ss_pred chHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhh
Confidence 1 112334788888 88999997 77663 34788888877765
No 290
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=93.83 E-value=0.05 Score=48.58 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=55.8
Q ss_pred eEEEecCCCCCccccCCCcEEEEEeccCCCCC---CCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC---GQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v~~~~~~lV~FYapwC~~C---k~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
....++.++++..+......++.|..+ |..| ...+=+.-|+.+.+.+....+.|.-. .+..|..+||
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gD-p~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------ 79 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGD-PARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------ 79 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS--TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT------
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCC-CCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------
Confidence 456788899998887666665555554 4444 34344666666667776677777745 5566999999
Q ss_pred eeeeeEEEEcCCCC
Q 006171 214 RRGLPSLVAFPPGC 227 (658)
Q Consensus 214 V~~yPTl~~f~~g~ 227 (658)
+..+|++++|++|.
T Consensus 80 v~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 80 VRRWPALVFFRDGR 93 (107)
T ss_dssp -TSSSEEEEEETTE
T ss_pred CccCCeEEEEECCE
Confidence 88999999999984
No 291
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.81 E-value=0.06 Score=43.00 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=36.8
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++.|+++||++|+++.+.+++.. +.+-.+|...+.. ...+.+..+ ...+|++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 56788999999999887776554 4667788775432 233555555 56888774
No 292
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=93.69 E-value=0.18 Score=45.45 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhcc---CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~---~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
++.++.| .+- +....+.+..++..+++ .+.|+.+.........++++|+|..+||+++|+++.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 4556655 332 22345667778777654 355555543222246799999999999999999875
No 293
>PTZ00051 thioredoxin; Provisional
Probab=93.60 E-value=0.38 Score=41.43 Aligned_cols=82 Identities=21% Similarity=0.221 Sum_probs=48.3
Q ss_pred hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~ 343 (658)
+...++ .+++.+++|. +.+ ....+.+..++..+. .+.|+.+... +...++++|+|.+.|++++|+++. .
T Consensus 11 ~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~ 83 (98)
T PTZ00051 11 FESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-V 83 (98)
T ss_pred HHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-E
Confidence 444443 3456566554 322 223455666666553 3556666432 246799999999999999998653 2
Q ss_pred eeeecCCCChHHHH
Q 006171 344 PVVYYGSFNNSRLS 357 (658)
Q Consensus 344 p~~y~g~~~~~~L~ 357 (658)
...+.|. ..++|+
T Consensus 84 ~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 84 VDTLLGA-NDEALK 96 (98)
T ss_pred EEEEeCC-CHHHhh
Confidence 2335664 444443
No 294
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.48 E-value=0.055 Score=45.10 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccc-h-hhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~-~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
++.|+++||++|+.+.+.++++... ..+-.|+..++ . ....+.+..+ +.++|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 5789999999999999888776542 23334444322 1 1122444456 7799986 4444
No 295
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.41 E-value=0.11 Score=43.99 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=26.1
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhccccee
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg 189 (658)
++.|+.+.|++|..+.+..+++.....+.+.+-
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 33 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVV 33 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEE
Confidence 468999999999999999999975555544433
No 296
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.045 Score=53.39 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=44.5
Q ss_pred ccCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHc
Q 006171 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL 87 (658)
Q Consensus 36 ~~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~----------~~~~~f~~i~~Aye~L 87 (658)
..+.|.+||+...++..+|+++||++..+.|||+-. ...+++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999522 1456799999999854
No 297
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.25 E-value=0.69 Score=49.24 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=43.1
Q ss_pred CceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhhccCCCccccCcc
Q 006171 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (658)
Q Consensus 306 ~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~~~~~vP~lts~~ 375 (658)
.+.||.|. ......+++++|+...++|++|+++ .-+.|.|.++...|.+|+-.---.-+-.+++..
T Consensus 90 gigfg~VD--~~Kd~klAKKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~ 155 (383)
T PF01216_consen 90 GIGFGMVD--SKKDAKLAKKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKH 155 (383)
T ss_dssp TEEEEEEE--TTTTHHHHHHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHH
T ss_pred CcceEEec--cHHHHHHHHhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChh
Confidence 34556654 3335789999999999999999986 456799999999999998764333343455544
No 298
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.95 E-value=0.44 Score=47.58 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=57.8
Q ss_pred EEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchh------------------------hhHHHhhCCCCc
Q 006171 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRL------------------------ATHLAERKPIGQ 210 (658)
Q Consensus 156 ~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~------------------------~~~Lc~k~~i~k 210 (658)
+|+.|.+.||+.|..-.+.+.++..+++... .+..|+++.... ...+++.||
T Consensus 31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg--- 107 (202)
T PRK13190 31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN--- 107 (202)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC---
Confidence 3446789999999999999999999997543 667777663211 012444444
Q ss_pred cccee------eeeEEEEcCCCCCC-CCCcccccCCCCHhHHHHHHHHh
Q 006171 211 IFFRR------GLPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 211 ~f~V~------~yPTl~~f~~g~~~-~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+. .+|+.+++-+++.- ........+.|+.++++..+...
T Consensus 108 ---v~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 108 ---LIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred ---CccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 53 58998888654430 00001114568999998887654
No 299
>PRK15000 peroxidase; Provisional
Probab=92.92 E-value=0.53 Score=46.95 Aligned_cols=97 Identities=8% Similarity=0.037 Sum_probs=61.3
Q ss_pred CCCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHh----hCC---------------CCc
Q 006171 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAE----RKP---------------IGQ 210 (658)
Q Consensus 152 ~~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~----k~~---------------i~k 210 (658)
.++++++.||+ .||+.|..-.|.+.+.+++++... .|-.|.++........++ +.+ +.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 36789999999 599999999999999999997654 677777773221111111 111 011
Q ss_pred cccee------eeeEEEEcCCCCCCCCCcccc----cCCCCHhHHHHHHHH
Q 006171 211 IFFRR------GLPSLVAFPPGCKSSDCMTRF----EGELSVDAVTDWFAT 251 (658)
Q Consensus 211 ~f~V~------~yPTl~~f~~g~~~~~~~~~Y----~G~rs~~~Lv~fv~k 251 (658)
.|.+. .+|+.+++-+.+. ....+ .-.|+.++++..+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~---I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGI---VRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCE---EEEEEecCCCCCCCHHHHHHHHHH
Confidence 24465 6888888864432 11112 234788888887754
No 300
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=92.79 E-value=0.08 Score=55.28 Aligned_cols=87 Identities=9% Similarity=0.191 Sum_probs=67.3
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
+..++=+.||+.||+..+...|.++-....+...-.++ .++........++++ +.+.|++.+.....
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~---- 141 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC---- 141 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc----
Confidence 46677889999999999999999987777665222333 344445555677788 77999999887654
Q ss_pred CcccccCCCCHhHHHHHHHHh
Q 006171 232 CMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+..|.|.++..+|++|-.+.
T Consensus 142 -~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 142 -PASYRGERDLASLVNFYTEI 161 (319)
T ss_pred -chhhcccccHHHHHHHHHhh
Confidence 58999999999999998776
No 301
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=92.78 E-value=0.45 Score=47.18 Aligned_cols=78 Identities=10% Similarity=0.197 Sum_probs=50.8
Q ss_pred CcEEEEEEe-CC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecC----
Q 006171 278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYG---- 349 (658)
Q Consensus 278 ~~v~vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g---- 349 (658)
+.++||.|. +. |....+.+..+|..|. .+.|..+.+.. ...+|++...||+++|+++.... .+.|
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G~~v~-~ivG~~~~ 174 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNGDIVK-QFIGLLEF 174 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECCEEEE-EEeCchhh
Confidence 345566553 32 2234677788998885 57888886432 36899999999999999874321 1222
Q ss_pred ---CCChHHHHHHHHh
Q 006171 350 ---SFNNSRLSEVMEQ 362 (658)
Q Consensus 350 ---~~~~~~L~~fi~~ 362 (658)
.++..+|..++.+
T Consensus 175 gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 175 GGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4566777777654
No 302
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.57 E-value=0.64 Score=46.21 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCcEEEEEec-cCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 153 ~~~~lV~FYa-pwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e 195 (658)
+++.+|.||+ .||.+|..-.+.+.+++++++... .|-.|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 5678889995 889999998899999999998654 777888773
No 303
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.23 E-value=0.083 Score=41.59 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=36.7
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
++.|..+||++|++....+++. .+.+-.+|.+++. ....|.+..+ ..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4678899999998876555321 1478888888653 3333445446 779999875
No 304
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.84 E-value=0.43 Score=54.60 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=63.3
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCC
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~ 231 (658)
+...-+--|++|.|++|....-...++|..- +.+..-.||+.++ .+++++|+ |.++|++++ ++.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~---~~~~~~~~------v~~VP~~~i--~~~---- 179 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALF---QDEVEALG------IQGVPAVFL--NGE---- 179 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhC---HHHHHhcC------CcccCEEEE--CCc----
Confidence 3456688899999999998887787777654 3556677888844 45899998 889999876 442
Q ss_pred CcccccCCCCHhHHHHHHHHh
Q 006171 232 CMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 232 ~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
..+.|..+.+.+++.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 4578989888888777543
No 305
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.65 E-value=0.11 Score=49.98 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=42.2
Q ss_pred cCCCcEEEEEeccCCCCCCCChH-HH--HHHHHHhhcccceeeeecccchhhhHHHhhC--------CCCcccceeeeeE
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFFRRGLPS 219 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P-~w--~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~--------~i~k~f~V~~yPT 219 (658)
..++++||.++++||+.|+.|+- .| .++|..|.....-.+||-++.+. +...| | ..|+|+
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd---id~~y~~~~~~~~~------~gGwPl 105 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD---IDKIYMNAVQAMSG------SGGWPL 105 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH---HHHHHHHHHHHHHS---------SSE
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc---HHHHHHHHHHHhcC------CCCCCc
Confidence 47899999999999999998874 44 34677776666666788876554 33333 4 459999
Q ss_pred EEEcCCCCC
Q 006171 220 LVAFPPGCK 228 (658)
Q Consensus 220 l~~f~~g~~ 228 (658)
-++..+...
T Consensus 106 ~vfltPdg~ 114 (163)
T PF03190_consen 106 TVFLTPDGK 114 (163)
T ss_dssp EEEE-TTS-
T ss_pred eEEECCCCC
Confidence 888876543
No 306
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=91.48 E-value=0.34 Score=54.27 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=27.1
Q ss_pred ccccCccCCCCHHHHHHHHHHHHHhcCCCCCC
Q 006171 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI 71 (658)
Q Consensus 40 Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~ 71 (658)
++=.++..=.+.++||++|||.++..||||-+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq 422 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ 422 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence 34446777789999999999999999999866
No 307
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.43 E-value=0.2 Score=46.62 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHh
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l 182 (658)
+.++.++.|+.++|+||+++.|.++++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 3567899999999999999999998877654
No 308
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=91.38 E-value=1 Score=41.13 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=50.9
Q ss_pred CcEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccc---------cHhHHhhcCCC----CCCEEEEEeCC
Q 006171 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVE----SAPAIVFLKDP 340 (658)
Q Consensus 278 ~~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---------s~~l~~~f~V~----~~Ptlvlfk~~ 340 (658)
++..+++|+. .|....|.++.++... ...+.+|.+.... -.++.++|++. +.||+++|++|
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 3455666642 2334578888877763 5667888765321 12566777655 49999999987
Q ss_pred CCCeeeecC-CCChHHHHHHHH
Q 006171 341 GVKPVVYYG-SFNNSRLSEVME 361 (658)
Q Consensus 341 ~~~p~~y~g-~~~~~~L~~fi~ 361 (658)
.... ...| ..+.+.|.+|+.
T Consensus 101 k~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 101 KQVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred eEEE-EEeCCCCCHHHHHHHhh
Confidence 5332 2456 456888888863
No 309
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=91.38 E-value=0.82 Score=40.16 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=55.8
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCCCcH---HHHHHHHhhccCceEEEEEecccccHhHHhhcCCC----CCCE-EEEEeC
Q 006171 268 GKNFLAKTGPHKVKVIFFSKTGERASP---FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAPA-IVFLKD 339 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~~~~~---~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~----~~Pt-lvlfk~ 339 (658)
+...+.. .+.+.++|..+.. .... .++.+|.+.++.-..++|...+.+...||++++|. ..|. |.-|++
T Consensus 12 fKKLLRT--r~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 12 FKKLLRT--RNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHhh--cCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccC
Confidence 3444433 3457666665432 2233 33447777665544555544444457899999998 5554 445676
Q ss_pred CCCCeeeecCCCChHHHHHHHHh
Q 006171 340 PGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 340 ~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
|+ -...|+..++...|..|++.
T Consensus 89 G~-fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 GD-FHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CC-ccccccchhhHHHHHHHhhC
Confidence 54 33458888888999999864
No 310
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.15 E-value=0.25 Score=41.37 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=38.3
Q ss_pred CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
+.-++.|..+||++|++..-.+++. + +.+-.+|++++.....+.+..| ...+|+|.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHC------CCCcCeEEE
Confidence 3457789999999999877666432 2 3566678775533344555556 679999853
No 311
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=91.03 E-value=0.23 Score=42.42 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=47.1
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~ 235 (658)
++.|..|||++|.+..-.++++..+..+ +.+-.+|.+.+. ....+.+..+.+ +..+|+|. .+|..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~~------- 67 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEKH------- 67 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCEE-------
Confidence 6788899999999987766665433212 356666665322 122354444421 46899984 34421
Q ss_pred ccCCCCHhHHHHHHHHh
Q 006171 236 FEGELSVDAVTDWFATA 252 (658)
Q Consensus 236 Y~G~rs~~~Lv~fv~k~ 252 (658)
-| ..++|++++++.
T Consensus 68 -ig--G~~dl~~~~~~~ 81 (86)
T TIGR02183 68 -VG--GCTDFEQLVKEN 81 (86)
T ss_pred -ec--CHHHHHHHHHhc
Confidence 22 247888887665
No 312
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=90.87 E-value=0.077 Score=49.17 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
.+.-++-|..+|||.|.+.-|...++|+... .+.+--+--+++. ++-.++-. ......||++++..+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~---el~~~~lt---~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENK---ELMDQYLT---NGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHH---HHTTTTTT----SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCCh---hHHHHHHh---CCCeecCEEEEEcCC
Confidence 4456667889999999999999999999753 3444444444332 24444310 117799999999654
No 313
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=0.64 Score=44.05 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=59.5
Q ss_pred cccCCCcEEEEEeccCCCCCCCChHHHHH---HHHHhhcccceeeeecc-------------cchhhhHHHhhCCCCccc
Q 006171 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKT---IAALLEGIANTGMVELG-------------DIRLATHLAERKPIGQIF 212 (658)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~Ck~l~P~w~~---~A~~l~g~~~vg~Vdc~-------------e~~~~~~Lc~k~~i~k~f 212 (658)
....++..|++|-++.|..|.+|...-.. +-+-+++...+..+|.. +--...+||++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~----- 112 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA----- 112 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc-----
Confidence 33678999999999999999988754432 23334443333333332 1112346999998
Q ss_pred ceeeeeEEEEcCCCCCCCCCcccccCCCCHhHH---HHHHHH
Q 006171 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV---TDWFAT 251 (658)
Q Consensus 213 ~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~L---v~fv~k 251 (658)
|++.||+++|...+. ..-.-.|-...+.+ .+|+.+
T Consensus 113 -vrstPtfvFfdk~Gk---~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 113 -VRSTPTFVFFDKTGK---TILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred -cccCceEEEEcCCCC---EEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999976644 12333576666654 445433
No 314
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=0.13 Score=50.16 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=46.9
Q ss_pred CcccccCccCCC--CHHHHHHHHHHHHHhcCCCCCCCh--------HHHHHHHHHHHHHcCChhhhhcccc
Q 006171 38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPS--------TADFLKIQYAYELLTDPLWKRNYDV 98 (658)
Q Consensus 38 d~Y~iLgv~~~a--~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Aye~L~d~~~R~~YD~ 98 (658)
|+...+|..+.+ ..+.++..|+.+.+.+|||+...+ -+.+..++.||.+|.+|-.|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344555655544 457789999999999999976521 2458899999999999999998864
No 315
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=89.94 E-value=3.2 Score=37.03 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCcEEEEEEeCCCCCC-cHHHHH------HHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeC-CCCCeeeec
Q 006171 277 PHKVKVIFFSKTGERA-SPFVRQ------ISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYY 348 (658)
Q Consensus 277 ~~~v~vl~f~~~~~~~-~~~~~~------~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~-~~~~p~~y~ 348 (658)
.+++.+|++....... ..+.+. +...+.+...+..+...+.+...+...|++.++|+++++.. .+.......
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 4678888775432101 111111 22233223333333333334467999999999999999987 444444468
Q ss_pred CCCChHHHHHHHHh
Q 006171 349 GSFNNSRLSEVMEQ 362 (658)
Q Consensus 349 g~~~~~~L~~fi~~ 362 (658)
|..+.+.+...++.
T Consensus 96 G~~~~~~f~~~L~~ 109 (114)
T cd02958 96 GNITPEDLLSQLIE 109 (114)
T ss_pred CCCCHHHHHHHHHH
Confidence 98888877766654
No 316
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.91 E-value=0.35 Score=46.46 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccccee
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg 189 (658)
..++.+++|+.+.|+||+++.+...++.+++.+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 57889999999999999999999999988875544443
No 317
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=89.75 E-value=1 Score=39.54 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=64.7
Q ss_pred cCCCCCcccc-CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEE
Q 006171 142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (658)
Q Consensus 142 t~~nF~~~v~-~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl 220 (658)
+.++.+.++. ++.+.+|=|+..--+ .....|.++|..+.....++...-. . +.+.++ + ..|++
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~~~~i 70 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-KMNEV 70 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-CCCcE
Confidence 3445677777 778888877765333 4566899999999766677665544 2 556665 4 47999
Q ss_pred EEcCCCCCCCCCcccc-cCCCCHhHHHHHHHHh
Q 006171 221 VAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (658)
Q Consensus 221 ~~f~~g~~~~~~~~~Y-~G~rs~~~Lv~fv~k~ 252 (658)
++++.... ....| .|..+.+.|.+|+...
T Consensus 71 ~l~~~~~e---~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFME---EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCC---CCcccCCCCCCHHHHHHHHHHh
Confidence 99976322 23669 8888999999998653
No 318
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=89.60 E-value=1.7 Score=39.76 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=38.4
Q ss_pred CcHHHHHHHHhhccCceEEEEEeccc-----ccHhHHhhcCCC-CCCEEEEEeCC
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~-----~s~~l~~~f~V~-~~Ptlvlfk~~ 340 (658)
..|.++.++..+.+.+.|..|.+.+. .+..+..+++|. +.||+++|+.+
T Consensus 46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 46778888888876788888876542 236799999998 99999999754
No 319
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=89.47 E-value=0.78 Score=40.57 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCccccCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (658)
Q Consensus 145 nF~~~v~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~ 224 (658)
+.+..+...++.+|=|+..--. .....|.++|..+.....++...-. . +.++++ + .|++++|+
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~~ 72 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLFR 72 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEEe
Confidence 3455566677888877765433 4677899999999766677766544 2 566776 6 68899995
Q ss_pred CCC--CC-CCCcccccCCCCHhHHHHHHHHh
Q 006171 225 PGC--KS-SDCMTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 225 ~g~--~~-~~~~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
+.. .+ ......|.|..+.++|.+|+...
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 421 00 01235699999999999998753
No 320
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=89.35 E-value=4.2 Score=36.14 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=55.7
Q ss_pred EEEEEEcCCCh--hHHHHHHHHHHHHHhhccccccccccccCCchHHHHhcCCCcEEEEEEecc-chHHHHHHHcccCCc
Q 006171 397 YCVILAGRLSP--ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGE-AQDRYCSFYLFSETS 473 (658)
Q Consensus 397 lcVi~~~~~~~--~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~~v~F~wvd~~-~q~~~~~~f~~~~~~ 473 (658)
-|+|++++..+ +++..++.+..+|+.. ...|++.-.+.-..+.++++ .-.++++-|..
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~---------------~aka~~k~~dap~~f~~a~ede~tdsLRDf~n---- 76 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKI---------------IAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTN---- 76 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHH---------------HHHhhccCCCcceeeeeeccchHHHHHHHhcC----
Confidence 58888886433 4778889998888832 22333322233334444442 23666666621
Q ss_pred ccccCCcCCCCCCCeEEEEEeecCCccccceeccccCcccccccccccCccccchhccCCCCChhHHHHHHHHHh
Q 006171 474 FETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 548 (658)
Q Consensus 474 ~~~c~~~~~~~~~p~vvI~~~~~n~~~~~~k~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 548 (658)
..+..|.+||+ |-..| -+|. . +.++. |.+.+..+|++++
T Consensus 77 --------L~d~~P~LviL----Dip~r-~~~v------~---~~eeI--------------T~e~~~~fv~~yl 115 (116)
T cd03071 77 --------LPEAAPLLTIL----DMSAR-AKYV------M---DVEEI--------------TPAIVEAFVSDFL 115 (116)
T ss_pred --------CCccCceEEEE----ecccc-ceEe------C---chHhc--------------CHHHHHHHHHHhh
Confidence 23345999999 76664 3444 2 44333 4467777777764
No 321
>PRK10329 glutaredoxin-like protein; Provisional
Probab=89.20 E-value=0.52 Score=39.85 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=46.9
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y 236 (658)
++.|..+||++|++..-.+++ +| +.+-.+|.++++......+..| ...+|++++ ++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~~-------- 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDLS-------- 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCEE--------
Confidence 567788999999886655532 12 3777888886554344444455 669999865 3321
Q ss_pred cCCCCHhHHHHHHHHh
Q 006171 237 EGELSVDAVTDWFATA 252 (658)
Q Consensus 237 ~G~rs~~~Lv~fv~k~ 252 (658)
-+....+.|.+.+...
T Consensus 61 ~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 61 WSGFRPDMINRLHPAP 76 (81)
T ss_pred EecCCHHHHHHHHHhh
Confidence 2345577777776543
No 322
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.84 E-value=0.64 Score=42.37 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=59.0
Q ss_pred Cccc--cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcC
Q 006171 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (658)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~ 224 (658)
+..| .+.+.++|-|--+|.+-|.++-....++|..+...+.|.-||.++- ..+-+-++ +...||+++|-
T Consensus 15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~------l~~p~tvmfFf 85 (142)
T KOG3414|consen 15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYE------LYDPPTVMFFF 85 (142)
T ss_pred HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhc------ccCCceEEEEE
Confidence 3445 3678899999999999999999999999999998889999998843 34555555 88999999887
Q ss_pred CCC
Q 006171 225 PGC 227 (658)
Q Consensus 225 ~g~ 227 (658)
++.
T Consensus 86 n~k 88 (142)
T KOG3414|consen 86 NNK 88 (142)
T ss_pred cCc
Confidence 663
No 323
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.81 E-value=1.2 Score=44.50 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=34.1
Q ss_pred cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e 195 (658)
.+|+.|.++||+.|..-.+.+.+++++++... .|..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45667889999999999999999999997654 777777774
No 324
>PTZ00062 glutaredoxin; Provisional
Probab=88.65 E-value=6 Score=39.63 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=48.9
Q ss_pred cEEEEEEeC----CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChH
Q 006171 279 KVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (658)
Q Consensus 279 ~v~vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~ 354 (658)
...|++|.. .+....+.+..++..| ..+.|..|. .+ |+|...|++++|+++..- -.+.|. +..
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~ 84 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTS 84 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHH
Confidence 355777732 2223456667788887 457777774 11 999999999999976431 224555 677
Q ss_pred HHHHHHHhhcc
Q 006171 355 RLSEVMEQNKL 365 (658)
Q Consensus 355 ~L~~fi~~~~~ 365 (658)
.|..++..+.-
T Consensus 85 ~~~~~~~~~~~ 95 (204)
T PTZ00062 85 TLVSFIRGWAQ 95 (204)
T ss_pred HHHHHHHHHcC
Confidence 78888877544
No 325
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.42 E-value=11 Score=43.27 Aligned_cols=172 Identities=11% Similarity=0.069 Sum_probs=91.6
Q ss_pred CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCc
Q 006171 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (658)
Q Consensus 154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~ 233 (658)
.++-+.+|.+-|..|..+....+++++.- +. |.+..+.. -...|++.+..+|.. ..
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~-----i~~~~~~~---------------~~~~p~~~~~~~~~~---~~ 74 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DK-----ITVEEDSL---------------DVRKPSFSITRPGED---TG 74 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-Cc-----eEEEEccC---------------CCCCCEEEEEcCCcc---ce
Confidence 34444444557999988776666666533 22 22221110 014699998876543 45
Q ss_pred ccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCc--HHHHHHHHhhccCce
Q 006171 234 TRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERAS--PFVRQISRNYWAYAS 308 (658)
Q Consensus 234 ~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~-~~~~--~~~~~~A~~~~~~~~ 308 (658)
..|.|--.=..+-.|+...+. +.+... ++ ++ ..+.+.... ..+.+. |.+.+| -|+. .....+|.. ...+.
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~-~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~ 149 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGHPPK-LD-QE-VIEQIKALD-GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNIT 149 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcC-CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCce
Confidence 788887776777777755422 122222 22 12 223333321 223333 334433 2332 222223332 23444
Q ss_pred EEEEEeccc-ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171 309 FAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 309 f~~v~~~~~-~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
+-.+ +. ..+++.++|++.+.|++++ ++ + ..+.|..+.+.|.+.+..
T Consensus 150 ~~~i---d~~~~~~~~~~~~v~~VP~~~i---~~-~-~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 150 HTMI---DGALFQDEVEARNIMAVPTVFL---NG-E-EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEE---EchhCHhHHHhcCCcccCEEEE---CC-c-EEEecCCCHHHHHHHHhc
Confidence 3333 33 3488999999999999976 22 2 347888777777766654
No 326
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.40 E-value=1.2 Score=46.49 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=44.1
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeee-----e-cCCCChHHHHHHHHhhcc
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----Y-YGSFNNSRLSEVMEQNKL 365 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~-----y-~g~~~~~~L~~fi~~~~~ 365 (658)
...+..+|..|. .++|..+....+. +..+|.+...|||++|++|...... . ...++..+|..|+..+..
T Consensus 165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 344566888874 6889888765542 6788999999999999986532221 1 224677889999887543
No 327
>PRK13191 putative peroxiredoxin; Provisional
Probab=88.27 E-value=2.1 Score=43.23 Aligned_cols=41 Identities=7% Similarity=-0.067 Sum_probs=33.5
Q ss_pred cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e 195 (658)
.+|+.|.++||+.|..-.+.+.+++.+++... .|..|+++.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34447789999999999999999999997654 777788773
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.34 E-value=15 Score=42.10 Aligned_cols=172 Identities=13% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~ 232 (658)
+.+.|+.|.. -|..|..+....+++++.- +.+.+-.-+- + ....|++.+..+|.. .
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~-------------~------~~~~p~~~~~~~~~~---~ 74 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTA-------------D------TLRKPSFTILRDGAD---T 74 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecC-------------C------cCCCCeEEEecCCcc---c
Confidence 3444555555 5888877666555555432 2222211111 1 225699988866643 3
Q ss_pred cccccCCCCHhHHHHHHHHhhc-cCCcceeeccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCcH--HHHHHHHhhccCc
Q 006171 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERASP--FVRQISRNYWAYA 307 (658)
Q Consensus 233 ~~~Y~G~rs~~~Lv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~~v~vl-~f~~~~-~~~~~--~~~~~A~~~~~~~ 307 (658)
...|.|--.=..+..|+...+. +.+... ++. + ..+.+...+ ..+.+. |.+..| -|+.. ....++... ..+
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i 149 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-G-IIDRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNI 149 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCc
Confidence 5788887766677777755321 122211 222 2 223333321 223333 344443 23321 112233321 233
Q ss_pred eEEEEEeccc-ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171 308 SFAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (658)
Q Consensus 308 ~f~~v~~~~~-~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~ 361 (658)
. +.+.+. ..+++.++|++.+.|++++ ++ + ..+.|..+.+.+.+.+.
T Consensus 150 ~---~~~id~~~~~~~~~~~~v~~VP~~~i---~~-~-~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 150 S---HTMIDGALFQDEVEALGIQGVPAVFL---NG-E-EFHNGRMDLAELLEKLE 196 (515)
T ss_pred e---EEEEEchhCHHHHHhcCCcccCEEEE---CC-c-EEEecCCCHHHHHHHHh
Confidence 3 333343 3488999999999999987 22 2 34788877776655554
No 329
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=87.24 E-value=1.3 Score=46.15 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred CCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeeccc
Q 006171 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (658)
Q Consensus 153 ~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e 195 (658)
++++++.|| +.||+.|..-.|.+.+..++++... .|..|.++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 456777778 8999999999999999999997654 788888874
No 330
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=86.62 E-value=3.3 Score=43.32 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhhccCceEEEEEecccc---------cHhHHhhcCCCCCCEEEEEeCCCCCe-
Q 006171 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKP- 344 (658)
Q Consensus 279 ~v~vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---------s~~l~~~f~V~~~Ptlvlfk~~~~~p- 344 (658)
++.+++| .+. |....|.+..++..|. +.+..|.+.... ...+.++|||...|+++++++++...
T Consensus 167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 3555555 332 2334677777887763 445555443211 24588999999999999998744332
Q ss_pred eeecCCCChHHHHHHHHh
Q 006171 345 VVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 345 ~~y~g~~~~~~L~~fi~~ 362 (658)
.+..|.++.+.|.+.+..
T Consensus 245 ~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 245 PIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 235688888888887654
No 331
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=86.20 E-value=2.5 Score=37.87 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=44.7
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCC----C--cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFSKTGER----A--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~~----~--~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
++.|+... ...|+||.+...+ . ...+=.+.++|......+.+. ......|..+||+..+|++++|+++.
T Consensus 19 ld~~l~~~---~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAP---GDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCC---SCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCC---CcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence 78888754 3567888643222 1 123344667776666555554 33357899999999999999999863
No 332
>PRK13599 putative peroxiredoxin; Provisional
Probab=86.13 E-value=1.3 Score=44.74 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=35.7
Q ss_pred cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccc
Q 006171 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (658)
Q Consensus 155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~ 196 (658)
.+|+.|.++||+.|..-.+.+.++..+++... .+..|+++..
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 35678889999999999999999999997654 8888998854
No 333
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=86.05 E-value=1.3 Score=40.90 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=37.7
Q ss_pred CcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChh
Q 006171 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL 91 (658)
Q Consensus 38 d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~d~~ 91 (658)
.-..||||++..+.++|.+.|.+|-...+|+++ ++.=.=.+|..|.|.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999999999976 44445566788888776443
No 334
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=85.99 E-value=3.3 Score=39.45 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=35.3
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
..+.+.|++...|+++++.+++.-...+.|..+.+.+.++++.-
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 56889999999999999976664444578888888899888753
No 335
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=85.99 E-value=0.87 Score=37.21 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=34.6
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
+.|..++|++|++....+++. .+.+-.+|.++++......++.| ..++|++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence 456779999998877555431 23677788886554333334446 669999755
No 336
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=85.86 E-value=1.1 Score=36.64 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=34.8
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCcccceeeeeEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++.|+.|||++|++..-.+++. -+.+-.+|..++.. ...+.+..+ -..+|++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 5678899999998877555542 13677778875432 233555555 45889874
No 337
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=85.80 E-value=0.57 Score=38.85 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=33.9
Q ss_pred EEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEE
Q 006171 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 158 V~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
+.|..+||++|.+....+++.. +.+-.+|.+.++ ....+.+..+ ...+|+|.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i~ 54 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSG------RRTVPQIF 54 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhC------CCCcCEEE
Confidence 5677899999999887776432 356666766443 2233444445 66899974
No 338
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=85.48 E-value=2.8 Score=48.69 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHhhccCceEEEEEeccc--ccHhHHhhcCCCCCCEEEEEeCCCCC--eeeecCCCChHHHHHHHHh
Q 006171 300 SRNYWAYASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 300 A~~~~~~~~f~~v~~~~~--~s~~l~~~f~V~~~Ptlvlfk~~~~~--p~~y~g~~~~~~L~~fi~~ 362 (658)
...++ .+.+..+++.+. +..++.++|++.+.||+++|+.+++. ...+.|..+.+++.+++++
T Consensus 503 ~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 503 QQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred HHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 33443 455666766543 23679999999999999999755443 2346888899999998876
No 339
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=85.09 E-value=1.2 Score=36.32 Aligned_cols=53 Identities=8% Similarity=0.075 Sum_probs=33.6
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchh-hhHHHhhCCCCccccee-eeeEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLV 221 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~-~~~Lc~k~~i~k~f~V~-~yPTl~ 221 (658)
++.|..+||++|.+....+++. .+.+-.+|.++++. ...+-+..+ .. ++|+|.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE
Confidence 4677889999999877666542 13667778775432 222334444 44 889774
No 340
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=83.96 E-value=1.3 Score=35.98 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=41.9
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y 236 (658)
++.|..+||+.|.+..-.+++. .+.+-.+|.+++.....+-+..| ...+|.| |.+|..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~-------- 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL-------- 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence 5778899999998875444421 23666777775443333434445 6789987 444521
Q ss_pred cCCCCHhHHHHHH
Q 006171 237 EGELSVDAVTDWF 249 (658)
Q Consensus 237 ~G~rs~~~Lv~fv 249 (658)
-| ..++|.+|+
T Consensus 61 ig--g~~~l~~~l 71 (72)
T cd03029 61 IG--GSDDLEKYF 71 (72)
T ss_pred Ee--CHHHHHHHh
Confidence 22 256777764
No 341
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.87 E-value=2.4 Score=48.03 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=45.3
Q ss_pred CCCCCCcHHHHHHHHhhccCceEEEEEecccc---cHhHHhhcCCCCCCEEEEEeCCC
Q 006171 287 KTGERASPFVRQISRNYWAYASFAFVLWREEE---SSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 287 ~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~---s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
.+|-...|.++.+|....+-.....|...+|. +..+|..|+|..+|+|.+|+.+.
T Consensus 70 GhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 70 GHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence 34456789999999988777777888888884 36799999999999999998864
No 342
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=6.3 Score=40.37 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=52.2
Q ss_pred CCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
.|+...|.+..+|.+|. ...|..|.+..| +..+..+||+..||.++|+++... ..+.|. +...|++-+.++
T Consensus 35 PCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 35 PCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred hHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecCC-CHHHHHHHHHHH
Confidence 34557899999999984 456777776665 467889999999999999976533 236665 666677766654
No 343
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=81.06 E-value=1.3 Score=44.26 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCcEEEEEeccCCCCCCCChHHH---HHHHHHhhcccceeeeec
Q 006171 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (658)
Q Consensus 153 ~~~~lV~FYapwC~~Ck~l~P~w---~~~A~~l~g~~~vg~Vdc 193 (658)
+++-+|+|++..|+||.++.|.+ +.+.+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 45679999999999999999865 677777655444544443
No 344
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=80.64 E-value=1.6 Score=38.30 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhH----HHhhCCCCcccceeeeeEEEEcCCC
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~----Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
++.|-.|||++|++..-.+++.. +.+..+|.++++.... +.+..| ...+|+| |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EECC
Confidence 67788899999988776554331 3455677764432222 333334 5688987 4555
No 345
>smart00594 UAS UAS domain.
Probab=79.71 E-value=11 Score=34.21 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=34.3
Q ss_pred EEEecccccHhHHhhcCCCCCCEEEEEeCCCCC---ee--eecCCCChHHHHHHH
Q 006171 311 FVLWREEESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM 360 (658)
Q Consensus 311 ~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~---p~--~y~g~~~~~~L~~fi 360 (658)
.+.+.+.+...+++.|++.++|+++++...+.. -+ ...|..+.++|..++
T Consensus 67 ~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 67 QVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 344444444789999999999999999765421 11 247888887776654
No 346
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=79.39 E-value=1.9 Score=42.50 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=67.8
Q ss_pred eEEEecCCCCCccc--cCCCc-EEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccc
Q 006171 137 AFNVVTSEDFPSIF--HDSKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (658)
Q Consensus 137 ~V~~Lt~~nF~~~v--~~~~~-~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~ 213 (658)
.|..++..+|.+.| .+... ++|..|...-..|.-+.-.+..+|..+-. ++|.++-.+ . +-..|.
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at---~---cIpNYP------ 158 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPAT---T---CIPNYP------ 158 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccc---c---ccCCCc------
Confidence 47888888888887 34455 55789999999999999999999988854 344444433 1 112334
Q ss_pred eeeeeEEEEcCCCCCC--CCCcccccCCC-CHhHHHHHHHHh
Q 006171 214 RRGLPSLVAFPPGCKS--SDCMTRFEGEL-SVDAVTDWFATA 252 (658)
Q Consensus 214 V~~yPTl~~f~~g~~~--~~~~~~Y~G~r-s~~~Lv~fv~k~ 252 (658)
=...|||.+|..|... ...+..+.|.+ +.+++-.++-+.
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 4589999999888542 11223445544 455666665544
No 347
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=78.53 E-value=1.4 Score=41.47 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHHHHHh--hcccceeeeec
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVEL 193 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l--~g~~~vg~Vdc 193 (658)
+..+.+++|+.+.|+||.++.+...++.+.+ .+.+.+.-++.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 5678899999999999999999999888887 55555555544
No 348
>PRK10638 glutaredoxin 3; Provisional
Probab=78.28 E-value=2.2 Score=35.85 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=34.0
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch-hhhHHHhhCCCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~-~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
++.|..+||++|++..-.+++. + +.+..+|++++. ....+.+..+ ...+|+|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSG------RTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 4556679999998876555432 2 356677887543 2233555556 668998743
No 349
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=77.98 E-value=2.5 Score=42.11 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=62.7
Q ss_pred CCcceEEEecC-CCCCcccc---CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCC
Q 006171 133 HSVHAFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPI 208 (658)
Q Consensus 133 ~~~~~V~~Lt~-~nF~~~v~---~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i 208 (658)
|.+..|++|+. +.|-..|+ +....+|..|-|.-.-|-.+.....=+|.++ +.++|.+|-.. .. +.
T Consensus 135 p~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~~-------ga 203 (273)
T KOG3171|consen 135 PRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---NT-------GA 203 (273)
T ss_pred CccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---cc-------cc
Confidence 33456788875 67888883 3456779999999999999888888888776 55678777766 21 22
Q ss_pred CcccceeeeeEEEEcCCCCC
Q 006171 209 GQIFFRRGLPSLVAFPPGCK 228 (658)
Q Consensus 209 ~k~f~V~~yPTl~~f~~g~~ 228 (658)
+..|..+++|||.+|.+|.-
T Consensus 204 s~~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 204 SDRFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred hhhhcccCCceEEEeeCCch
Confidence 23444889999999998853
No 350
>PHA03050 glutaredoxin; Provisional
Probab=77.51 E-value=1.6 Score=39.08 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=33.9
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeeccc---ch-hhhHHHhhCCCCcccceeeeeEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD---IR-LATHLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e---~~-~~~~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
++.|..+||++|++....+++..-+. ..+-.+|.++ .. ....+-+..| .+.+|+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEEE
Confidence 77889999999998776665542111 1355566653 11 1223444455 66899984
No 351
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=76.66 E-value=3.5 Score=36.26 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.3
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHH
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi 360 (658)
..+.+.|+|.+.||++++...+.....+.|.++.+.|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 46899999999999999965444444578999988887753
No 352
>PRK13189 peroxiredoxin; Provisional
Probab=76.01 E-value=3.8 Score=41.52 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=34.2
Q ss_pred cEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccc
Q 006171 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (658)
Q Consensus 155 ~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~ 196 (658)
.+|+.|.++||+.|..-.+.+.+++.+++... .|..|.++..
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 44556779999999999999999999997654 7888888844
No 353
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=75.23 E-value=15 Score=32.61 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=29.2
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHH
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~ 358 (658)
..+++.|+|.+.|+++++..++ ....+.|..+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 5699999999999999998765 4334678777776643
No 354
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=75.00 E-value=3.4 Score=35.43 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=31.1
Q ss_pred cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhh-hHHHhhCCCCcccceeeeeEEEEcCCC
Q 006171 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (658)
Q Consensus 163 pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~-~~Lc~k~~i~k~f~V~~yPTl~~f~~g 226 (658)
|||++|++....+++.. +.+..+|..++... ..|.+..| ...+|+| |.+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 79999988765554332 46777777644432 33455555 6689987 4444
No 355
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.11 E-value=44 Score=32.00 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.9
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHH
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~ 358 (658)
++|+++|+|.+.|++++|...++.--...|.++.+.+..
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLA 143 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHH
Confidence 589999999999999999876544322377777665443
No 356
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.77 E-value=5.9 Score=39.72 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=46.0
Q ss_pred CcEEEEEEe---CCCCCCcHHHHHHHHhhc-cCceEEEEEecccccHhHHhhcCCC------CCCEEEEEeCCC
Q 006171 278 HKVKVIFFS---KTGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVE------SAPAIVFLKDPG 341 (658)
Q Consensus 278 ~~v~vl~f~---~~~~~~~~~~~~~A~~~~-~~~~f~~v~~~~~~s~~l~~~f~V~------~~Ptlvlfk~~~ 341 (658)
.-|.+-||. ++|-+.+|.+-.++..|. +.++||.|.++. -++...+|+|+ ..||+++|+++.
T Consensus 145 t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--fpd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 145 TYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--FPDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred eEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--CcChHHheeeccCcccccCCeEEEEccch
Confidence 347676774 345556888888888775 567899998765 25688999996 399999998764
No 357
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=73.49 E-value=14 Score=33.04 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=44.4
Q ss_pred ccchhhhhhhhhcCCCcEEEEEEeCCCCCCcH--HHHH---HHHhhccCceEEEEEeccc--ccHhHHhhcCCCC-CCEE
Q 006171 263 TKESMGKNFLAKTGPHKVKVIFFSKTGERASP--FVRQ---ISRNYWAYASFAFVLWREE--ESSIWWNTFEVES-APAI 334 (658)
Q Consensus 263 t~~~~~~~Fl~~~~~~~v~vl~f~~~~~~~~~--~~~~---~A~~~~~~~~f~~v~~~~~--~s~~l~~~f~V~~-~Ptl 334 (658)
++.+.+++++... .+++.++|=.++ -|+.. .++. ......+.+.++++.+.+. -+..++.+|||.. -|-+
T Consensus 5 ~t~eql~~i~~~S-~~~~~~iFKHSt-~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 5 TTEEQLEEILEES-KEKPVLIFKHST-RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp -SHHHHHHHHHH----SEEEEEEE-T-T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CCHHHHHHHHHhc-ccCcEEEEEeCC-CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 3434467777653 355645444333 13321 1222 2222222377888887664 3477999999985 8999
Q ss_pred EEEeCCCCCeeeecCCCChHHH
Q 006171 335 VFLKDPGVKPVVYYGSFNNSRL 356 (658)
Q Consensus 335 vlfk~~~~~p~~y~g~~~~~~L 356 (658)
++++++...-..-+..++.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999863211112555666554
No 358
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=72.90 E-value=4.9 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=32.3
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcc-cceeeeecccch--hhhHHHhhC-CCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~-~~vg~Vdc~e~~--~~~~Lc~k~-~i~k~f~V~~yPTl~~ 222 (658)
++.|--|+|++|++....+. .. +.+..++.+.+. ......++. | .+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 45677799999987654443 32 266666666443 222333333 5 679998765
No 359
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=72.59 E-value=1.2 Score=39.59 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCCCCcccc--CCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhH-HHhhCCCCccccee-eee
Q 006171 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRR-GLP 218 (658)
Q Consensus 143 ~~nF~~~v~--~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~-Lc~k~~i~k~f~V~-~yP 218 (658)
.++++.++. .+++++|.=.+..|+-.......|++......+.+.++-|+.-+++...+ +|+++| |+ .=|
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSP 80 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESP 80 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SS
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCC
Confidence 355666773 47888888889999988888788888887776657899999887665444 788888 55 679
Q ss_pred EEEEcCCCC
Q 006171 219 SLVAFPPGC 227 (658)
Q Consensus 219 Tl~~f~~g~ 227 (658)
.++++++|.
T Consensus 81 Q~ili~~g~ 89 (105)
T PF11009_consen 81 QVILIKNGK 89 (105)
T ss_dssp EEEEEETTE
T ss_pred cEEEEECCE
Confidence 999999995
No 360
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=70.97 E-value=15 Score=42.17 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.5
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHH
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~ 361 (658)
..+.+.|+|...|+++++.+++.....+.|.++.+.|.++|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 568899999999999877554443344689999999999887
No 361
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=69.95 E-value=13 Score=33.78 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=18.6
Q ss_pred HhHHhhcCCCCCCEEEEEeCCC
Q 006171 320 SIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
..+.+.|+|...|+++++..++
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G 110 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADG 110 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4678899999999999997654
No 362
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=67.52 E-value=13 Score=29.27 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=27.0
Q ss_pred cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEE
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvl 336 (658)
.+.+..++..+ ..+.|..+... +.+++.++|++.+.|++++
T Consensus 18 ~~~l~~l~~~~-~~i~~~~id~~--~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 18 VQAANRIAALN-PNISAEMIDAA--EFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHHhC-CceEEEEEEcc--cCHhHHHHcCCcccCEEEE
Confidence 34444454433 34666666543 2467999999999999876
No 363
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=67.18 E-value=16 Score=34.75 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=41.4
Q ss_pred CcEEEEEe-ccCCCCCCCC-hHHHHHHHHHhhccc--ceeeeecccchhhhHHHhhCC
Q 006171 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 154 ~~~lV~FY-apwC~~Ck~l-~P~w~~~A~~l~g~~--~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
++.++.|| +.||+.|..- .+.+.+...+++..+ .|..|.++......+.|++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 34444455 7899999997 999999999997654 488899886555566788876
No 364
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=66.58 E-value=22 Score=29.33 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCC-ChHHHHHHH
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~-~~~~L~~fi 360 (658)
..+.++.++.++...+.|..+. ..+.+.+|++.+.||+++ ++ +. .+.|.. +.+.|.+++
T Consensus 16 ~~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~G--~~-~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 16 TEKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV--DG--EL-VIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE--CC--EE-EEEeccCCHHHHHHHh
Confidence 3456667777765455554443 233477899999999999 33 22 377754 346676665
No 365
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=65.46 E-value=7 Score=34.16 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=29.4
Q ss_pred cCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhh-HHHhhCCCCcccceeeeeEEE
Q 006171 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLV 221 (658)
Q Consensus 163 pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~-~Lc~k~~i~k~f~V~~yPTl~ 221 (658)
|||++|++....+++.. +.+-.+|..++.... .|.+..| ...+|+|.
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg------~~tvP~vf 72 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQLY 72 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhC------CCCCCEEE
Confidence 99999988776554431 356677776443322 3444445 56888874
No 366
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=64.98 E-value=4.9 Score=33.73 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=50.8
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccc
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y 236 (658)
++.|..|.|+-|..+....++++.. ....+-.||.++++. +-++|+ . ..|.|.+=..... .....-
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~---l~~~Y~------~-~IPVl~~~~~~~~--~~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPE---LFEKYG------Y-RIPVLHIDGIRQF--KEQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHH---HHHHSC------T-STSEEEETT-GGG--CTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHH---HHHHhc------C-CCCEEEEcCcccc--ccccee
Confidence 6788899999998766555544322 225799999996553 888997 3 6888665432111 112344
Q ss_pred cCCCCHhHHHHHHH
Q 006171 237 EGELSVDAVTDWFA 250 (658)
Q Consensus 237 ~G~rs~~~Lv~fv~ 250 (658)
.+..+.+.|.+|++
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 67788898888863
No 367
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=64.96 E-value=12 Score=38.69 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.1
Q ss_pred CCCcEEEEEeccCCCCCCCChHHHHHH
Q 006171 152 DSKPWLIQVYSDGSYLCGQFSGAWKTI 178 (658)
Q Consensus 152 ~~~~~lV~FYapwC~~Ck~l~P~w~~~ 178 (658)
+.+..++.|.-|.|++|+++.++..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 456789999999999999998776543
No 368
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=64.94 E-value=36 Score=29.10 Aligned_cols=70 Identities=7% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CcEEEEEEe-CCC-CCC--cHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCCh
Q 006171 278 HKVKVIFFS-KTG-ERA--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (658)
Q Consensus 278 ~~v~vl~f~-~~~-~~~--~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~ 353 (658)
+.+.+.+|. ..+ .|+ .+.+..++..+ ..+.+..+... +..+++++|+|.+.|++++ ++ + ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi--dG--~-~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGA--LFQDEVEERGIMSVPAIFL--NG--E-LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhH--hCHHHHHHcCCccCCEEEE--CC--E-EEEeCCCCH
Confidence 345566664 322 232 34445566544 34566666533 2467999999999999975 32 2 346675443
Q ss_pred HH
Q 006171 354 SR 355 (658)
Q Consensus 354 ~~ 355 (658)
++
T Consensus 84 ~e 85 (89)
T cd03026 84 EE 85 (89)
T ss_pred HH
Confidence 33
No 369
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=63.98 E-value=11 Score=37.35 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=31.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 006171 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (658)
Q Consensus 46 ~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~ 88 (658)
+++|+.+||.+|+.++..+|- ++.+.-.+|..||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence 578999999999999999993 34567888999999654
No 370
>PF13728 TraF: F plasmid transfer operon protein
Probab=63.63 E-value=34 Score=34.49 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=43.8
Q ss_pred CcHHHHHHHHhhccCceEEEEEeccc---------ccHhHHhhcCCCCCCEEEEEeCCCCCee-eecCCCChHHHHH
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSE 358 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~---------~s~~l~~~f~V~~~Ptlvlfk~~~~~p~-~y~g~~~~~~L~~ 358 (658)
..|.++.++..| .+....|.+... .+..+.++|||...|++++...++.+.. +-.|-++.++|.+
T Consensus 138 ~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 138 QAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred HHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHH
Confidence 467777788876 344444443211 2367899999999999999988774422 2478888777654
No 371
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=62.76 E-value=9.2 Score=34.56 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred CCcEEEEEEe-CCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCC--CCEEEEEeCCC
Q 006171 277 PHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPG 341 (658)
Q Consensus 277 ~~~v~vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~--~Ptlvlfk~~~ 341 (658)
.+++.+|.|. +-| ....+.+...+..+.....|..+.+.. +.......|++.+ .||+++|...+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~-~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED-DEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC-CCCchhhhcccCCCccceEEEECCCC
Confidence 4567677664 222 222333333333222234566665543 2234567888876 99999997544
No 372
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=60.83 E-value=5.9 Score=36.64 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=49.9
Q ss_pred cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeE-EEEc
Q 006171 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS-LVAF 223 (658)
Q Consensus 151 ~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPT-l~~f 223 (658)
..++.++|-|-.+|-..|.++-....++|..++....|..||.++-+ .+.+-|. +. -|. +++|
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp---dfn~~ye------l~-dP~tvmFF 81 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP---DFNQMYE------LY-DPCTVMFF 81 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH---CCHHHTT------S--SSEEEEEE
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch---hhhcccc------cC-CCeEEEEE
Confidence 46889999999999999999999999999999999999999999444 3556666 65 454 5555
No 373
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=59.55 E-value=8.3 Score=42.89 Aligned_cols=54 Identities=9% Similarity=0.074 Sum_probs=33.7
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhh---------CCCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER---------KPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k---------~~i~k~f~V~~yPTl~~ 222 (658)
++.|..|||++|++..-.+++. | +.+-.||.++++...++-++ .| .+.+|+|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g------~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEH------IRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCC------CCccCeEEE
Confidence 6778899999998766444432 2 36667888755432222222 24 668999855
No 374
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=59.32 E-value=65 Score=29.51 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.7
Q ss_pred hcCCCCCCEEEEEeCCCC
Q 006171 325 TFEVESAPAIVFLKDPGV 342 (658)
Q Consensus 325 ~f~V~~~Ptlvlfk~~~~ 342 (658)
.|++.++|+++++...+.
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 468999999999987654
No 375
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=57.26 E-value=44 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=18.2
Q ss_pred HhHHhhcCCCCCCEEEEEeCCC
Q 006171 320 SIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
..+.+.|++.+.|+++++.+.+
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g 108 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDG 108 (116)
T ss_pred chHHHhcCcCccceEEEECCCC
Confidence 5688999999999999986554
No 376
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=9.8 Score=40.94 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCC-------ChHHHHHHHHHHHHHcCChhhhhcccccC
Q 006171 49 SSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (658)
Q Consensus 49 a~~~eIk~ayr~l~~~~HPD~~~-------~~~~~f~~i~~Aye~L~d~~~R~~YD~~g 100 (658)
++..+|+.+|+..+...||++-. ...+.+.+|.+||.+|++.+.|...|.+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56788999999999999999652 34566999999999999977666777654
No 377
>PF13446 RPT: A repeated domain in UCH-protein
Probab=55.87 E-value=11 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=32.1
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Aye~L~ 88 (658)
.+-|+.|||+++.+.+.|-.+|+.... -.| .......+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHH
Confidence 367999999999999999999999887 112 23444555555554
No 378
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=55.67 E-value=29 Score=31.55 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.9
Q ss_pred HhHHhhcCCCCCCEEEEEeCCC
Q 006171 320 SIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
..+.+.|+|...|+++++..++
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4577889999999999997544
No 379
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=54.64 E-value=1.1e+02 Score=28.29 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=43.9
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCCC-cHHHHHHHHhhccCceEEEEEeccccc-HhHHhhcCCCCCCEEEEEeCCCCC
Q 006171 268 GKNFLAKTGPHKVKVIFFSKTGERA-SPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK 343 (658)
Q Consensus 268 ~~~Fl~~~~~~~v~vl~f~~~~~~~-~~~~~~~A~~~~~~~~f~~v~~~~~~s-~~l~~~f~V~~~Ptlvlfk~~~~~ 343 (658)
+++-+.+ ...+++|+=|+...+.. ..+-..++..-.+..+|+.+...+-+. ++..+-|++...|++++|-.+.+-
T Consensus 14 VdqaI~~-t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 14 VDQAILS-TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHhc-ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 3444433 34678888898654211 111122222222344566666666544 789999999999999988765433
No 380
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=54.64 E-value=63 Score=30.74 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=42.2
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccc----------cHhH-Hhhc---CCCCCCEEEEEeCCCCCee-eecCCCChHHH
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVKPV-VYYGSFNNSRL 356 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~----------s~~l-~~~f---~V~~~Ptlvlfk~~~~~p~-~y~g~~~~~~L 356 (658)
..|.+..++.+|. +.+..|...+.. ...+ ...| ++...|+.+++...+.... .+.|.++.+.|
T Consensus 68 e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l 145 (153)
T TIGR02738 68 FAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAEL 145 (153)
T ss_pred HHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHH
Confidence 3566666766662 444445443221 1223 3445 7888999999976544322 46899998888
Q ss_pred HHHHHh
Q 006171 357 SEVMEQ 362 (658)
Q Consensus 357 ~~fi~~ 362 (658)
.+.+..
T Consensus 146 ~~~I~~ 151 (153)
T TIGR02738 146 ANRMDE 151 (153)
T ss_pred HHHHHH
Confidence 877754
No 381
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=54.21 E-value=18 Score=32.14 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=58.1
Q ss_pred CCCCccccCC-CcEEEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEE
Q 006171 144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 144 ~nF~~~v~~~-~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
++.+.++... ++.+|=|+..--+ .....|.++|..+.....++...-. .+.++++ +. .|++++
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~------~~-~~~vvl 72 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLK------VS-PGQLVV 72 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcC------CC-CCceEE
Confidence 3355555444 6777777765433 4567899999999777788766544 2556665 53 577888
Q ss_pred cCCCCCC---CCCcccccCC-CCHhH-HHHHHHH
Q 006171 223 FPPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT 251 (658)
Q Consensus 223 f~~g~~~---~~~~~~Y~G~-rs~~~-Lv~fv~k 251 (658)
|++..-+ ......|.|. .+.++ |..|++.
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8553211 1123568887 66656 9999864
No 382
>PRK10824 glutaredoxin-4; Provisional
Probab=53.86 E-value=14 Score=33.60 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=18.0
Q ss_pred cCCCCCCCChHHHHHHHHHhhcccceeeeecccc
Q 006171 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI 196 (658)
Q Consensus 163 pwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~ 196 (658)
|||++|++..-.+.+.. +.+..+|..++
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d 55 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQN 55 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCC
Confidence 79999988776555442 24555666544
No 383
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=53.07 E-value=24 Score=33.02 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=47.3
Q ss_pred CcEEEEEeccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCCCCCCCCC
Q 006171 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (658)
Q Consensus 154 ~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~ 232 (658)
..-++.+|+|.||-|.. |-+ .|+..+ .|..+..++ ...|-++++|. +.-++-=|.++ +|
T Consensus 25 ~~~~~vyksPnCGCC~~----w~~---~mk~~Gf~Vk~~~~~d---~~alK~~~gIp--~e~~SCHT~VI--~G------ 84 (149)
T COG3019 25 ATEMVVYKSPNCGCCDE----WAQ---HMKANGFEVKVVETDD---FLALKRRLGIP--YEMQSCHTAVI--NG------ 84 (149)
T ss_pred eeeEEEEeCCCCccHHH----HHH---HHHhCCcEEEEeecCc---HHHHHHhcCCC--hhhccccEEEE--cC------
Confidence 34578899999999975 433 344333 677776663 23366667632 22223334332 22
Q ss_pred cccccCCCCHhHHHHHHHHh
Q 006171 233 MTRFEGELSVDAVTDWFATA 252 (658)
Q Consensus 233 ~~~Y~G~rs~~~Lv~fv~k~ 252 (658)
.-.+|..-+++|..++...
T Consensus 85 -y~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 85 -YYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred -EEEeccCCHHHHHHHHhCC
Confidence 2237888899999998765
No 384
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=52.48 E-value=37 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.1
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHH
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L 356 (658)
..+++.|++...|+.+++...+.....+.|.++.+.|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4678889999999777775444433346787776543
No 385
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=52.05 E-value=1.4e+02 Score=26.97 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=31.0
Q ss_pred ccHhHHhhcCCCCCCEEEEEeCCCCCee---eecCCCChHHHHHHHH
Q 006171 318 ESSIWWNTFEVESAPAIVFLKDPGVKPV---VYYGSFNNSRLSEVME 361 (658)
Q Consensus 318 ~s~~l~~~f~V~~~Ptlvlfk~~~~~p~---~y~g~~~~~~L~~fi~ 361 (658)
+...++..+++.++|+++++-..+.+-. ...|.++.++|...++
T Consensus 64 eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 64 EGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred HHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 3367999999999999999843222221 2589888888776554
No 386
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=49.96 E-value=71 Score=26.83 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=36.3
Q ss_pred CcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 278 ~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
..+.+|+.+-.. ....++.....+ ...+..+...+.....+.+.|+|...|+++++..++
T Consensus 34 ~~v~~v~Vs~d~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 34 DDVEFVFVSLDE--DEEEWKKFLKKN--NFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp TTEEEEEEE-SS--SHHHHHHHHHTC--TTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred CCEEEEEEEeCC--CHHHHHHHHHhc--CCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCC
Confidence 346667665422 233444433332 235566655554457899999999999999997654
No 387
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=47.41 E-value=73 Score=32.07 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=49.8
Q ss_pred EEEEEEeCCC---CCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCCCeee------ecCC
Q 006171 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV------YYGS 350 (658)
Q Consensus 280 v~vl~f~~~~---~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~------y~g~ 350 (658)
++|.++.+.. +.....+.-+|..| ..++|..+..+.. ..-.+|..+..|+|++|+.++-.... +..+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~---gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT---GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc---cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 4455665422 22233344477776 4677888765443 35678888899999999987532210 1233
Q ss_pred CChHHHHHHHHhhcc
Q 006171 351 FNNSRLSEVMEQNKL 365 (658)
Q Consensus 351 ~~~~~L~~fi~~~~~ 365 (658)
+...++..|++...+
T Consensus 238 ffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGL 252 (273)
T ss_pred hhhhhHHHHHHHcCC
Confidence 455678888877543
No 388
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.31 E-value=1.4e+02 Score=31.85 Aligned_cols=99 Identities=9% Similarity=0.197 Sum_probs=57.6
Q ss_pred eccchhhhhhhhhcCCCcEEEEEEeCC---CCC---C--cHHHHHHHHhhccC--------ceEEEEEecccccHhHHhh
Q 006171 262 YTKESMGKNFLAKTGPHKVKVIFFSKT---GER---A--SPFVRQISRNYWAY--------ASFAFVLWREEESSIWWNT 325 (658)
Q Consensus 262 it~~~~~~~Fl~~~~~~~v~vl~f~~~---~~~---~--~~~~~~~A~~~~~~--------~~f~~v~~~~~~s~~l~~~ 325 (658)
.++.+ ...|+...+.|--.+++|+-. ..| . ...+..+|..++.. +-|+.|... +.+.+.+.
T Consensus 45 ~n~d~-~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~ 121 (331)
T KOG2603|consen 45 MNDDK-FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQ 121 (331)
T ss_pred ecCcc-hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHH
Confidence 34444 788887555555566666421 111 1 12223366655432 335556543 36889999
Q ss_pred cCCCCCCEEEEEeCCCCCee---eecC---CCChHHHHHHHHhh
Q 006171 326 FEVESAPAIVFLKDPGVKPV---VYYG---SFNNSRLSEVMEQN 363 (658)
Q Consensus 326 f~V~~~Ptlvlfk~~~~~p~---~y~g---~~~~~~L~~fi~~~ 363 (658)
+++++.|++++|++....+. .+++ ....+.|.+|++.-
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 99999999999977543332 1211 12366777888763
No 389
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=46.98 E-value=81 Score=32.79 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=43.6
Q ss_pred CcHHHHHHHHhhccCceEEEEEecccc---------cHhHHhhcCCCCCCEEEEEeCCCCCee-eecCCCChHHHHHH
Q 006171 292 ASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEV 359 (658)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~v~~~~~~---------s~~l~~~f~V~~~Ptlvlfk~~~~~p~-~y~g~~~~~~L~~f 359 (658)
..|.++..+..| .+....|.+.... ...+++++||+..|++++...++.+.. +-.|-++.++|.+=
T Consensus 168 ~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 168 MAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKER 243 (256)
T ss_pred HHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 467777777776 3444444433221 144888999999999999988755432 23788888777653
No 390
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=46.16 E-value=46 Score=34.08 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=40.6
Q ss_pred cceEEEecCCCCCccc---cCCCcEEEEEeccCCCCCCCChHHHHHHHHHhhccc
Q 006171 135 VHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (658)
Q Consensus 135 ~~~V~~Lt~~nF~~~v---~~~~~~lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~ 186 (658)
++.|+.++.++..++. +.+.|.+++|=|=.|+.=..-.+.++++++++....
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a 135 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA 135 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh
Confidence 5567888887754444 579999999999888877777788889988887654
No 391
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=43.34 E-value=88 Score=39.28 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=54.1
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhhccCceEEEEEec----cc-----------------------ccHhHHhhc
Q 006171 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWR----EE-----------------------ESSIWWNTF 326 (658)
Q Consensus 278 ~~v~vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~v~~~----~~-----------------------~s~~l~~~f 326 (658)
.++.+|.| .. .|....|.+..+..+|.+. .|..+.+. +. ....+.++|
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 45666655 22 2334567788888888643 23333321 11 123577899
Q ss_pred CCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 327 ~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
+|...|+.+++...+.....+.|....+.|.+++...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 9999999999965554434468888888888887764
No 392
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=42.85 E-value=31 Score=30.75 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=33.2
Q ss_pred EEEEeccCCCCCCCChHHHHHHHHHhhcccceeeeecccch--hhhHHHhhCCCCcccceeeeeEEEE
Q 006171 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERKPIGQIFFRRGLPSLVA 222 (658)
Q Consensus 157 lV~FYapwC~~Ck~l~P~w~~~A~~l~g~~~vg~Vdc~e~~--~~~~Lc~k~~i~k~f~V~~yPTl~~ 222 (658)
+|.|-.+||..|+++.-.|.+ +.....+-.+|-.++. ....|.+-.+ -+.+|.+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg------~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTG------QRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcC------CCCCCEEEE
Confidence 466888999999997767765 3333356666655321 2222443334 457887554
No 393
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=42.80 E-value=1.8e+02 Score=23.77 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=25.2
Q ss_pred cHhHHhhcCCCCCCEEEEEeCCCCCeeeecC-CCChHHHHHHHH
Q 006171 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (658)
Q Consensus 319 s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g-~~~~~~L~~fi~ 361 (658)
.+++ .+|||.+.|++++ ++ .+.+.| ..+.+.|.+|++
T Consensus 39 ~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 39 FEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 3566 9999999999976 22 356888 456777887764
No 394
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=42.41 E-value=1.3e+02 Score=28.80 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=32.3
Q ss_pred HhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 320 ~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
..+.+.|++.+.|+.+++..++.....+.|.++.+.|.+++.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 45778899999997777755444333467888999998888763
No 395
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.33 E-value=38 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhhcccCCCchHHHHHHHHHHHHHHHHHhcc
Q 006171 589 MKQRIRNIMGQCYDYLGDPRIGPALLLAALMSFGTIWLMRG 629 (658)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (658)
++.+.......+.+|+.++|+-.+++..| +.+...|+.+|
T Consensus 54 ~~~~~~~~~~~~~~~V~e~P~~svgiAag-vG~llG~Ll~R 93 (94)
T PF05957_consen 54 AREQAREAAEQTEDYVRENPWQSVGIAAG-VGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHHHHHhC
Confidence 34667888999999999999999887655 55555666555
No 396
>PHA03049 IMV membrane protein; Provisional
Probab=39.41 E-value=38 Score=27.40 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCCCCCChHHHHHH
Q 006171 614 LLAALMSFGTIWLMRGQQRAHPSQSGQPGPSANEVIES 651 (658)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (658)
+.+|.+.++.+-.-+|++ + .|.++|||...|-+|.
T Consensus 10 ICVaIi~lIvYgiYnkk~-~--~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 10 ICVVIIGLIVYGIYNKKT-T--TSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHhccc-c--cCCCCCChhhccCchh
Confidence 334445555555556665 2 3445566555555554
No 397
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=38.46 E-value=45 Score=38.39 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=43.9
Q ss_pred ceEEEEEeccc--ccHhHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHhh
Q 006171 307 ASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (658)
Q Consensus 307 ~~f~~v~~~~~--~s~~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~~ 363 (658)
+..-.++++.. +..++.++|++-+.|++++|..++.++..-.|.++.+.+.++++..
T Consensus 509 ~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 509 VVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 34445555443 3367899999999999999997777777788989999888888753
No 398
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=36.78 E-value=2e+02 Score=24.96 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=38.2
Q ss_pred CcEEEEEEeCCCCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCC-CCCeeeecCCCC
Q 006171 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFN 352 (658)
Q Consensus 278 ~~v~vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~-~~~p~~y~g~~~ 352 (658)
.+.++-+|.++.....-.++.+|..+++...|.... .+. + ....-. .+.+++|++. ......|.|.++
T Consensus 17 kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~-G~~----~-~~~~~~-~~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 17 KRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF-GDV----T-KPERPP-GDNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred CceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe-ccc----c-ccccCC-CCCeEEECCCCCCCceEEccCCC
Confidence 345555776654333455677999999888765432 221 1 111122 3455666665 334467999874
No 399
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=35.84 E-value=80 Score=30.33 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.1
Q ss_pred CCCcEEEEEe-ccCCCCCCCChHHHHHHHHHhhccc-ceeeeecccchhhhHHHhhCC
Q 006171 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP 207 (658)
Q Consensus 152 ~~~~~lV~FY-apwC~~Ck~l~P~w~~~A~~l~g~~-~vg~Vdc~e~~~~~~Lc~k~~ 207 (658)
.++++++.|| ..+++-|..=+-.|++.-.+++... .|--|.-+.......++++++
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 3557888888 5688889888888999888888765 666777775556677899986
No 400
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=35.84 E-value=69 Score=24.96 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=20.3
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHHHHHhccccccCC
Q 006171 598 GQCYDYLGDPRIGPALLLAALMSFGTIWLMRGQQRAHP 635 (658)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (658)
+.+.+.++-......+++++++.....+..++++ +||
T Consensus 19 D~l~~~lglg~~~~~~~~~~~l~~~~~~~~~~~~-~~p 55 (55)
T PF03988_consen 19 DFLSKTLGLGYLISTLIFAALLAVVLALWYRSKR-YRP 55 (55)
T ss_pred HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 3333345555566666777765555544444444 565
No 401
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=35.22 E-value=1.1e+02 Score=32.82 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCccCcccccCccC-CCCHHHHHHHHHHHHHhc-------CCCCCC------ChHHHHHHHHHHHHHc
Q 006171 22 LGLFYQLVVLPRSFPPSHYDALGIKP-YSSVEQVKEAYEKFSSKW-------NSGEEI------PSTADFLKIQYAYELL 87 (658)
Q Consensus 22 ~~~l~~~~~~~~~~~~d~Y~iLgv~~-~a~~~eIk~ayr~l~~~~-------HPD~~~------~~~~~f~~i~~Aye~L 87 (658)
+.+++.+++-......++++-||++. ..+.+|+.+-.+.++.+. ++|.+. ...+-+.++.+||+.|
T Consensus 67 ~y~~F~~~WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l 146 (318)
T PF12725_consen 67 LYFLFYLLWGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENL 146 (318)
T ss_pred HHHHHHHHhhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 34455666666666788899999997 789999887777666543 344321 2356699999999988
Q ss_pred CChhhh
Q 006171 88 TDPLWK 93 (658)
Q Consensus 88 ~d~~~R 93 (658)
++....
T Consensus 147 ~~~~p~ 152 (318)
T PF12725_consen 147 AERYPF 152 (318)
T ss_pred HHhCCc
Confidence 754433
No 402
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=34.72 E-value=1e+02 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=20.0
Q ss_pred cHHHHHHHHhhccCceEEEEEeccc-ccHhHHhhcCCCCCCEE
Q 006171 293 SPFVRQISRNYWAYASFAFVLWREE-ESSIWWNTFEVESAPAI 334 (658)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~v~~~~~-~s~~l~~~f~V~~~Ptl 334 (658)
.+.+..++..+.+.+.+..+...+. +...+.+++++..+|++
T Consensus 40 ~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 40 LPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred hHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 3455555555544444443321111 12446667777666754
No 403
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=34.36 E-value=15 Score=35.70 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=23.0
Q ss_pred EEeccCCCCCCCChHHHHHHHHHhhccc
Q 006171 159 QVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (658)
Q Consensus 159 ~FYapwC~~Ck~l~P~w~~~A~~l~g~~ 186 (658)
.|.-|.|+.|-.++|.|.++..++...+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5889999999999999999999998765
No 404
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=33.94 E-value=1.5e+02 Score=30.74 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHhhccCceEEEEEeccc---------ccHhHHhhcCCCCCCEEEEEeCCCCCee-eecCCCChHHHHHH
Q 006171 291 RASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEV 359 (658)
Q Consensus 291 ~~~~~~~~~A~~~~~~~~f~~v~~~~~---------~s~~l~~~f~V~~~Ptlvlfk~~~~~p~-~y~g~~~~~~L~~f 359 (658)
...|.++..+..| .....-|.+... ......+++||..+|++++...++.+.. +-.|-++.++|.+=
T Consensus 160 ~~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~R 236 (248)
T PRK13703 160 QLAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKR 236 (248)
T ss_pred HHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 3467777788776 333333433221 1123667999999999999988765432 24788888777653
No 405
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=33.16 E-value=63 Score=29.19 Aligned_cols=44 Identities=9% Similarity=-0.012 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCC---CC----hHHHHHHHHHHHHHcCCh
Q 006171 47 PYSSVEQVKEAYEKFSSKWNSGEE---IP----STADFLKIQYAYELLTDP 90 (658)
Q Consensus 47 ~~a~~~eIk~ayr~l~~~~HPD~~---~~----~~~~f~~i~~Aye~L~d~ 90 (658)
+..+..+++.|.|.+-++.|||.- |. ..+-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456778999999999999999942 21 233377777777766654
No 406
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=29.41 E-value=60 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=27.0
Q ss_pred HHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHHHH
Q 006171 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (658)
Q Consensus 201 ~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv~k 251 (658)
..+++.+ |.+.||+++ +| ..+.|..+.++|.+.+.+
T Consensus 127 ~~~~~~~------i~~tPt~~i--nG-------~~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLG------ITGTPTFFI--NG-------KYVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-------SSSSEEEE--TT-------CEEETTTSHHHHHHHHHH
T ss_pred HHHHHcC------CccccEEEE--CC-------EEeCCCCCHHHHHHHHcC
Confidence 3667778 889999988 55 235888999999988753
No 407
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=29.40 E-value=78 Score=31.45 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=41.2
Q ss_pred CcEEEEEEeCC---CCCCcHHHHHHHHhhccCceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCC
Q 006171 278 HKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (658)
Q Consensus 278 ~~v~vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~ 341 (658)
.++++-|+.+. |+-....+.-+|..+. ...|..|.... .+-|+.+++|.-.|+|++|+++.
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~--~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEK--APFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEeccc--CceeeeeeeeeEeeeEEEEEcCE
Confidence 34545565432 3333445566777654 45677776544 47799999999999999999864
No 408
>PHA02125 thioredoxin-like protein
Probab=28.31 E-value=1.4e+02 Score=24.33 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.9
Q ss_pred ccHhHHhhcCCCCCCEEE
Q 006171 318 ESSIWWNTFEVESAPAIV 335 (658)
Q Consensus 318 ~s~~l~~~f~V~~~Ptlv 335 (658)
+..+++++|+|.+.||++
T Consensus 34 ~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 34 EGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CCHHHHHHcCCceeCeEE
Confidence 357899999999999987
No 409
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=26.99 E-value=39 Score=32.80 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=15.1
Q ss_pred hHHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhH
Q 006171 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDA 244 (658)
Q Consensus 200 ~~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~ 244 (658)
..++++.+ |+++||+++|..... ......+|..+.+.
T Consensus 137 ~~la~~m~------I~~~Ptlvi~~~~~~--~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 137 QQLAREMG------ITGFPTLVIFNENNE--EYGILIEGYYSYEV 173 (176)
T ss_dssp HHHHHHTT-------SSSSEEEEE---------------------
T ss_pred HHHHHHcC------CCCCCEEEEEecccc--cccccccccccccc
Confidence 34889999 889999999983322 12233455554443
No 410
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.99 E-value=55 Score=30.06 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=6.5
Q ss_pred HHHHHHHHHhcccc
Q 006171 618 LMSFGTIWLMRGQQ 631 (658)
Q Consensus 618 ~~~~~~~~~~~~~~ 631 (658)
+|.++.++++|+++
T Consensus 80 ~Illi~y~irR~~K 93 (122)
T PF01102_consen 80 IILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhc
Confidence 34444555555554
No 411
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=25.90 E-value=3.4e+02 Score=26.66 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=32.2
Q ss_pred HhHHhhcCC--CCCCEEEEEeCCCCCe-eeecCCCChHHHHHHHHh
Q 006171 320 SIWWNTFEV--ESAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 320 ~~l~~~f~V--~~~Ptlvlfk~~~~~p-~~y~g~~~~~~L~~fi~~ 362 (658)
..+...|++ ...|+.+++..++... ..+.|.++.+.|.+.|..
T Consensus 124 ~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 124 DVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred hHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 346778995 5899999997776552 257899998888776655
No 412
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=25.59 E-value=1.2e+02 Score=29.59 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=31.5
Q ss_pred hHHhhcCCCCCCEEEEEeCCCCCeeeecCCCChHHHHHHHHh
Q 006171 321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (658)
Q Consensus 321 ~l~~~f~V~~~Ptlvlfk~~~~~p~~y~g~~~~~~L~~fi~~ 362 (658)
.+...|+|...|+.+++...+.-...+.|.++.+.+.++++.
T Consensus 133 ~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred cHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 466789999999888776555444456899998888887765
No 413
>PF15179 Myc_target_1: Myc target protein 1
Probab=24.45 E-value=1e+02 Score=30.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 006171 613 LLLAALMSFGTIWLMRGQQRA 633 (658)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~ 633 (658)
|++||+|-+...|+.||+.++
T Consensus 33 LviG~li~~LltwlSRRRASa 53 (197)
T PF15179_consen 33 LVIGALIWALLTWLSRRRASA 53 (197)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 678889999999999988655
No 414
>PF15102 TMEM154: TMEM154 protein family
Probab=24.19 E-value=61 Score=30.65 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=6.4
Q ss_pred cCCCCCCCCCCChH
Q 006171 633 AHPSQSGQPGPSAN 646 (658)
Q Consensus 633 ~~~~~~~~~~~~~~ 646 (658)
+.+..++|-+++++
T Consensus 87 ~K~~~ss~gsq~~~ 100 (146)
T PF15102_consen 87 TKQEPSSQGSQSAL 100 (146)
T ss_pred cCCCCccccccccc
Confidence 43434445555444
No 415
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=23.86 E-value=2.3e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHhhcccceeeeecccchhhhHHHhhCCCCcccceeeeeEEEEcCC
Q 006171 170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (658)
Q Consensus 170 ~l~P~w~~~A~~l~g~~~vg~Vdc~e~~~~~~Lc~k~~i~k~f~V~~yPTl~~f~~ 225 (658)
.+.++++.+.+.+......+.|..+ ..+-++|+ |+.+||+++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~Id-----P~~F~~y~------I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQID-----PRLFRQYN------ITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeEC-----hhHHhhCC------ceEcCEEEEEcC
Confidence 5667777776666544333344433 34778888 999999999887
No 416
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=23.51 E-value=55 Score=27.11 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=17.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhccc
Q 006171 605 GDPRIGPALLLAALMSFGTIWLMRGQ 630 (658)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (658)
.+++++|+++++|+..++.++..-|.
T Consensus 2 ~~pel~PL~~~vg~a~~~a~~~~~r~ 27 (73)
T PF06522_consen 2 KHPELYPLFVIVGVAVGGATFYLYRL 27 (73)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHH
Confidence 36899999877777555555444443
No 417
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=23.31 E-value=4.8e+02 Score=26.21 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=58.5
Q ss_pred HHHHHHHHhhccCCCccccCcchhhhcccccCCcCCCCCCcccEEEEEEcCCChhHHHHHHHHHHHHHhhcccccccccc
Q 006171 354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAAD 433 (658)
Q Consensus 354 ~~L~~fi~~~~~~~vP~lts~~~~~~~c~~~~~~~~~k~~~~~lcVi~~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~ 433 (658)
.++++-.+.++|..|-+++...+..++-.+. . ..|.+|-+..++-+...-+...|..++.
T Consensus 79 ~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As----~----gvwVvvhLy~~gvp~c~Ll~~~l~~la~------------ 138 (240)
T KOG3170|consen 79 AEWRATAEKAKFGEVFPISGPDYVKEVTKAS----E----GVWVVVHLYKQGVPLCALLSHHLQSLAC------------ 138 (240)
T ss_pred HHHHHHHHHhcccceeeccchHHHHHHHhcc----C----ccEEEEEeeccccHHHHHHHHHHHHHhh------------
Confidence 4456668888999999999999877666442 1 2355554555555555555566655555
Q ss_pred ccCCchHHHHhcCCCcEEEEEEeccchHHHHHHHcccCCcccccCCcCCCCCCCeEEEE
Q 006171 434 TDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV 492 (658)
Q Consensus 434 ~~~~~~~~A~~~~~~~v~F~wvd~~~q~~~~~~f~~~~~~~~~c~~~~~~~~~p~vvI~ 492 (658)
.|.. ++|+=+-+ -+|-|.++..++|.|+|+
T Consensus 139 ----------kfp~--iKFVki~a-----------------t~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 139 ----------KFPQ--IKFVKIPA-----------------TTCIPNYPESNLPTLLVY 168 (240)
T ss_pred ----------cCCc--ceEEeccc-----------------ccccCCCcccCCCeEEEe
Confidence 4533 45544322 247777788889999998
No 418
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=22.94 E-value=1.1e+02 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHhhCCCCcccceeeeeEEEEcCCCCCCCCCcccccCCCCHhHHHHHH
Q 006171 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (658)
Q Consensus 201 ~Lc~k~~i~k~f~V~~yPTl~~f~~g~~~~~~~~~Y~G~rs~~~Lv~fv 249 (658)
+++++++ |.|.||+++ +| ..+.|..+.+.|.+.+
T Consensus 120 ~~~~~~g------i~gtPt~~v--~g-------~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALG------ITGTPAFII--GD-------TVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcC------CCcCCeEEE--CC-------EEecCCCCHHHHHHHh
Confidence 4677888 889999887 34 3568888888877654
No 419
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=22.40 E-value=1.9e+02 Score=27.78 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=27.0
Q ss_pred ceEEEEEecccccHhHHhhcCCCCCCEEEEEeCCCC
Q 006171 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (658)
Q Consensus 307 ~~f~~v~~~~~~s~~l~~~f~V~~~Ptlvlfk~~~~ 342 (658)
..-.++...+...+++..+|+|+..|++++.++++.
T Consensus 92 ~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 92 GDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred CCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCC
Confidence 334455555554578999999999999999988663
No 420
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=2.1e+02 Score=23.80 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.2
Q ss_pred cCcccccCccCCCCHHHHHHHHHHHHHhcCCC
Q 006171 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSG 68 (658)
Q Consensus 37 ~d~Y~iLgv~~~a~~~eIk~ayr~l~~~~HPD 68 (658)
.|--+++|+.+.|+..||+.|-++.+++..--
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 45667889999999999999998888876433
Done!