Query 006172
Match_columns 658
No_of_seqs 242 out of 972
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 19:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 99.9 5.5E-24 1.2E-28 217.6 8.4 105 526-657 1-105 (335)
2 COG0270 Dcm Site-specific DNA 99.9 8.7E-24 1.9E-28 223.3 9.1 109 524-656 2-110 (328)
3 PRK10458 DNA cytosine methylas 99.9 3.7E-22 8E-27 220.2 10.8 126 524-657 87-222 (467)
4 cd00315 Cyt_C5_DNA_methylase C 99.8 1.3E-21 2.7E-26 202.3 8.5 106 526-657 1-106 (275)
5 TIGR00675 dcm DNA-methyltransf 99.8 1.4E-21 3.1E-26 205.6 8.7 103 528-657 1-103 (315)
6 KOG0919 C-5 cytosine-specific 99.2 1E-11 2.2E-16 126.7 6.8 111 524-656 2-112 (338)
7 cd00315 Cyt_C5_DNA_methylase C 99.2 2.4E-11 5.2E-16 126.1 6.4 157 329-518 102-273 (275)
8 PRK10458 DNA cytosine methylas 98.4 1.6E-07 3.4E-12 104.9 4.9 57 466-522 398-456 (467)
9 PF00145 DNA_methylase: C-5 cy 98.3 1.4E-07 3.1E-12 96.9 0.1 55 463-519 280-334 (335)
10 TIGR00675 dcm DNA-methyltransf 97.9 4.5E-06 9.8E-11 88.7 1.1 179 328-513 98-310 (315)
11 PF13659 Methyltransf_26: Meth 97.7 7.3E-05 1.6E-09 66.3 6.5 83 525-615 1-84 (117)
12 TIGR03704 PrmC_rel_meth putati 97.4 0.00016 3.6E-09 74.5 4.2 82 525-616 87-168 (251)
13 COG0270 Dcm Site-specific DNA 97.3 0.0001 2.2E-09 78.8 2.7 183 328-520 106-322 (328)
14 PF03602 Cons_hypoth95: Conser 97.3 0.00033 7.2E-09 69.4 5.2 82 524-611 42-124 (183)
15 COG2520 Predicted methyltransf 97.1 0.0006 1.3E-08 73.9 5.9 95 506-611 171-266 (341)
16 PF02475 Met_10: Met-10+ like- 97.1 0.00095 2.1E-08 67.3 6.7 81 522-612 99-180 (200)
17 TIGR00095 RNA methyltransferas 97.1 0.0011 2.4E-08 65.8 7.0 83 524-612 49-132 (189)
18 PRK15128 23S rRNA m(5)C1962 me 97.0 0.0018 4E-08 71.4 7.6 82 524-611 220-303 (396)
19 PF09445 Methyltransf_15: RNA 96.9 0.0011 2.4E-08 65.0 4.9 82 527-617 2-85 (163)
20 PHA03412 putative methyltransf 96.8 0.002 4.4E-08 66.9 6.0 122 470-615 5-128 (241)
21 PRK10909 rsmD 16S rRNA m(2)G96 96.8 0.0038 8.3E-08 62.8 7.7 77 525-610 54-130 (199)
22 PF13847 Methyltransf_31: Meth 96.7 0.0045 9.8E-08 58.2 6.7 84 524-615 3-87 (152)
23 TIGR02085 meth_trns_rumB 23S r 96.5 0.0036 7.7E-08 68.3 5.9 76 525-610 234-309 (374)
24 smart00165 UBA Ubiquitin assoc 96.5 0.0044 9.5E-08 45.7 4.5 36 99-136 2-37 (37)
25 PRK03522 rumB 23S rRNA methylu 96.5 0.0051 1.1E-07 65.4 6.8 80 525-614 174-253 (315)
26 PF05175 MTS: Methyltransferas 96.5 0.0088 1.9E-07 57.9 7.5 77 524-610 31-107 (170)
27 TIGR01177 conserved hypothetic 96.4 0.013 2.9E-07 62.5 9.4 82 523-615 181-262 (329)
28 PF00627 UBA: UBA/TS-N domain; 96.4 0.0063 1.4E-07 45.3 4.9 36 98-135 2-37 (37)
29 TIGR00446 nop2p NOL1/NOP2/sun 96.4 0.0069 1.5E-07 62.9 7.0 85 524-616 71-155 (264)
30 PRK09328 N5-glutamine S-adenos 96.3 0.013 2.8E-07 59.9 8.4 82 524-615 108-189 (275)
31 PHA03411 putative methyltransf 96.3 0.0072 1.6E-07 64.0 6.4 93 503-615 46-140 (279)
32 cd00194 UBA Ubiquitin Associat 96.2 0.01 2.3E-07 43.8 5.1 36 99-136 2-37 (38)
33 smart00650 rADc Ribosomal RNA 96.2 0.012 2.7E-07 56.6 6.6 76 524-612 13-88 (169)
34 TIGR00479 rumA 23S rRNA (uraci 96.1 0.015 3.3E-07 64.2 8.1 83 524-613 292-374 (431)
35 PRK14904 16S rRNA methyltransf 96.0 0.013 2.8E-07 65.3 7.1 84 524-617 250-334 (445)
36 TIGR00537 hemK_rel_arch HemK-r 96.0 0.023 5E-07 55.0 7.8 76 526-615 21-96 (179)
37 PRK10901 16S rRNA methyltransf 95.9 0.022 4.7E-07 63.2 7.9 84 524-615 244-327 (427)
38 COG0742 N6-adenine-specific me 95.9 0.023 5.1E-07 57.1 7.3 91 515-612 34-125 (187)
39 PRK13168 rumA 23S rRNA m(5)U19 95.8 0.019 4.2E-07 63.8 7.3 85 524-615 297-381 (443)
40 PRK11805 N5-glutamine S-adenos 95.8 0.025 5.5E-07 60.3 7.8 80 526-615 135-215 (307)
41 TIGR03533 L3_gln_methyl protei 95.8 0.033 7.2E-07 58.7 8.6 81 525-615 122-203 (284)
42 PRK11783 rlmL 23S rRNA m(2)G24 95.8 0.024 5.1E-07 66.9 8.1 82 524-614 538-621 (702)
43 PRK05031 tRNA (uracil-5-)-meth 95.8 0.017 3.7E-07 62.8 6.5 82 526-611 208-298 (362)
44 PRK14902 16S rRNA methyltransf 95.8 0.022 4.8E-07 63.4 7.4 85 524-616 250-335 (444)
45 KOG0944 Ubiquitin-specific pro 95.6 0.035 7.6E-07 64.4 8.3 101 15-139 574-674 (763)
46 COG2263 Predicted RNA methylas 95.5 0.036 7.8E-07 56.0 7.1 73 524-610 45-117 (198)
47 COG2265 TrmA SAM-dependent met 95.5 0.017 3.7E-07 64.7 5.3 79 524-610 293-371 (432)
48 cd02440 AdoMet_MTases S-adenos 95.5 0.034 7.4E-07 45.5 5.9 79 527-614 1-79 (107)
49 PRK14967 putative methyltransf 95.5 0.029 6.2E-07 56.5 6.3 78 524-613 36-113 (223)
50 TIGR00536 hemK_fam HemK family 95.5 0.046 1E-06 57.3 8.0 80 526-615 116-196 (284)
51 smart00165 UBA Ubiquitin assoc 95.4 0.017 3.7E-07 42.5 3.4 34 15-49 4-37 (37)
52 PRK14901 16S rRNA methyltransf 95.4 0.037 8E-07 61.6 7.5 89 524-616 252-340 (434)
53 PF09288 UBA_3: Fungal ubiquit 95.4 0.011 2.3E-07 48.6 2.4 37 14-50 11-55 (55)
54 TIGR03534 RF_mod_PrmC protein- 95.4 0.032 6.9E-07 56.0 6.4 82 524-615 87-168 (251)
55 PF05958 tRNA_U5-meth_tr: tRNA 95.3 0.022 4.9E-07 61.8 5.2 81 527-610 199-287 (352)
56 PRK14903 16S rRNA methyltransf 95.3 0.043 9.3E-07 61.2 7.4 86 524-617 237-323 (431)
57 cd00194 UBA Ubiquitin Associat 95.2 0.029 6.3E-07 41.5 4.0 34 15-49 4-37 (38)
58 COG1092 Predicted SAM-dependen 95.2 0.084 1.8E-06 58.6 9.3 107 525-657 218-326 (393)
59 PRK04338 N(2),N(2)-dimethylgua 95.1 0.042 9.1E-07 60.6 6.5 76 525-610 58-134 (382)
60 PF10672 Methyltrans_SAM: S-ad 95.0 0.086 1.9E-06 56.2 8.5 83 524-615 123-207 (286)
61 COG5207 UBP14 Isopeptidase T [ 95.0 0.085 1.8E-06 59.8 8.6 88 15-125 561-648 (749)
62 PF00627 UBA: UBA/TS-N domain; 94.9 0.03 6.4E-07 41.7 3.4 34 14-48 4-37 (37)
63 TIGR02143 trmA_only tRNA (urac 94.9 0.042 9.2E-07 59.7 5.8 83 526-611 199-289 (353)
64 KOG0919 C-5 cytosine-specific 94.7 0.018 3.9E-07 60.1 2.4 51 468-518 286-336 (338)
65 TIGR02987 met_A_Alw26 type II 94.7 0.036 7.7E-07 62.9 4.8 88 524-615 31-126 (524)
66 PRK00117 recX recombination re 94.4 1 2.2E-05 43.2 13.5 124 13-197 29-156 (157)
67 TIGR02021 BchM-ChlM magnesium 94.3 0.13 2.8E-06 51.3 7.3 54 514-570 45-98 (219)
68 PRK14896 ksgA 16S ribosomal RN 94.3 0.084 1.8E-06 54.7 6.1 74 524-612 29-102 (258)
69 TIGR02752 MenG_heptapren 2-hep 94.3 0.14 3E-06 51.1 7.5 82 524-614 45-127 (231)
70 PRK00274 ksgA 16S ribosomal RN 93.9 0.13 2.9E-06 53.6 6.8 73 524-610 42-114 (272)
71 PRK14968 putative methyltransf 93.8 0.19 4.1E-06 48.0 7.2 78 524-613 23-102 (188)
72 TIGR00308 TRM1 tRNA(guanine-26 93.8 0.12 2.5E-06 57.1 6.3 77 525-610 45-123 (374)
73 TIGR00563 rsmB ribosomal RNA s 93.7 0.18 3.8E-06 56.1 7.7 85 524-617 238-325 (426)
74 TIGR00755 ksgA dimethyladenosi 93.7 0.12 2.6E-06 53.1 6.0 75 524-610 29-103 (253)
75 PF12847 Methyltransf_18: Meth 93.4 0.25 5.5E-06 43.2 6.7 74 525-609 2-78 (112)
76 PRK09489 rsmC 16S ribosomal RN 93.4 0.18 3.9E-06 54.8 6.9 73 527-611 199-271 (342)
77 TIGR00080 pimt protein-L-isoas 93.3 0.28 6.1E-06 49.1 7.7 83 524-614 77-159 (215)
78 COG5207 UBP14 Isopeptidase T [ 93.3 0.44 9.5E-06 54.3 9.7 85 99-192 559-643 (749)
79 COG2890 HemK Methylase of poly 93.1 0.15 3.2E-06 54.0 5.5 78 527-615 113-190 (280)
80 TIGR02469 CbiT precorrin-6Y C5 93.1 0.45 9.7E-06 42.0 7.8 76 524-607 19-94 (124)
81 TIGR00138 gidB 16S rRNA methyl 93.0 0.21 4.6E-06 49.3 6.2 75 525-609 43-117 (181)
82 KOG0944 Ubiquitin-specific pro 93.0 0.35 7.6E-06 56.5 8.7 99 99-210 572-673 (763)
83 PF02384 N6_Mtase: N-6 DNA Met 92.9 0.1 2.2E-06 54.8 4.0 108 500-614 23-138 (311)
84 TIGR00406 prmA ribosomal prote 92.8 0.22 4.8E-06 52.4 6.3 46 524-571 159-204 (288)
85 KOG3420 Predicted RNA methylas 92.8 0.17 3.7E-06 49.7 4.9 76 524-610 48-123 (185)
86 PRK14966 unknown domain/N5-glu 92.5 0.24 5.1E-06 55.6 6.3 78 525-611 252-329 (423)
87 PTZ00338 dimethyladenosine tra 92.4 0.23 5.1E-06 52.9 5.9 98 500-612 12-112 (294)
88 PF09288 UBA_3: Fungal ubiquit 92.3 0.18 3.8E-06 41.6 3.7 28 99-126 10-37 (55)
89 PRK11036 putative S-adenosyl-L 92.1 0.24 5.2E-06 50.8 5.5 78 523-610 43-121 (255)
90 PLN02396 hexaprenyldihydroxybe 92.1 0.4 8.6E-06 51.9 7.3 43 524-569 131-173 (322)
91 PF07499 RuvA_C: RuvA, C-termi 92.0 0.32 7E-06 38.2 4.8 36 98-133 3-40 (47)
92 PRK07580 Mg-protoporphyrin IX 91.8 0.41 8.9E-06 47.5 6.5 45 524-571 63-107 (230)
93 PRK11207 tellurite resistance 91.6 0.61 1.3E-05 46.3 7.5 73 525-609 31-103 (197)
94 PRK00517 prmA ribosomal protei 91.5 0.32 6.9E-06 50.1 5.5 51 518-570 113-163 (250)
95 PRK00312 pcm protein-L-isoaspa 91.5 0.53 1.1E-05 46.8 6.9 80 524-614 78-157 (212)
96 PRK08287 cobalt-precorrin-6Y C 91.3 0.63 1.4E-05 45.4 7.2 46 524-570 31-76 (187)
97 COG4123 Predicted O-methyltran 91.3 0.36 7.8E-06 50.7 5.7 82 525-613 45-127 (248)
98 KOG2730 Methylase [General fun 91.1 0.18 3.9E-06 52.3 3.3 103 507-616 77-180 (263)
99 PLN02244 tocopherol O-methyltr 90.9 0.68 1.5E-05 50.0 7.6 75 523-608 117-193 (340)
100 PRK00107 gidB 16S rRNA methylt 90.7 0.83 1.8E-05 45.6 7.5 79 520-608 41-119 (187)
101 KOG1227 Putative methyltransfe 90.5 0.23 5.1E-06 53.5 3.5 57 511-570 182-239 (351)
102 PRK00377 cbiT cobalt-precorrin 90.5 0.73 1.6E-05 45.6 6.8 78 524-609 40-119 (198)
103 PRK01544 bifunctional N5-gluta 90.5 0.59 1.3E-05 53.4 7.0 81 525-615 139-220 (506)
104 PRK00121 trmB tRNA (guanine-N( 90.4 0.94 2E-05 45.2 7.5 82 524-612 40-122 (202)
105 PRK15001 SAM-dependent 23S rib 90.2 0.45 9.7E-06 52.7 5.6 75 526-611 230-308 (378)
106 PF01170 UPF0020: Putative RNA 90.2 0.59 1.3E-05 46.1 5.9 79 524-610 28-115 (179)
107 PLN02585 magnesium protoporphy 90.2 0.62 1.3E-05 50.3 6.5 42 524-568 144-185 (315)
108 PRK14135 recX recombination re 89.9 5.3 0.00011 41.5 12.8 135 12-197 125-262 (263)
109 PRK07402 precorrin-6B methylas 89.8 0.61 1.3E-05 45.9 5.6 47 524-571 40-86 (196)
110 KOG2904 Predicted methyltransf 89.8 0.61 1.3E-05 50.0 5.8 83 526-612 150-233 (328)
111 COG2227 UbiG 2-polyprenyl-3-me 89.7 0.72 1.6E-05 48.3 6.2 72 524-607 59-130 (243)
112 COG2264 PrmA Ribosomal protein 89.6 0.66 1.4E-05 50.0 6.1 54 515-570 153-206 (300)
113 PRK14135 recX recombination re 89.3 6.2 0.00013 41.0 12.8 130 13-200 75-208 (263)
114 TIGR03840 TMPT_Se_Te thiopurin 89.0 0.81 1.8E-05 46.5 6.0 40 523-565 33-72 (213)
115 PF00398 RrnaAD: Ribosomal RNA 88.6 0.57 1.2E-05 48.7 4.6 77 524-610 30-106 (262)
116 PRK05134 bifunctional 3-demeth 88.4 1.8 3.8E-05 43.4 7.9 43 524-569 48-90 (233)
117 TIGR00091 tRNA (guanine-N(7)-) 88.3 1.4 3E-05 43.6 7.0 83 524-612 16-98 (194)
118 PTZ00098 phosphoethanolamine N 88.2 1.7 3.6E-05 45.3 7.8 72 475-568 22-94 (263)
119 KOG2561 Adaptor protein NUB1, 87.5 1.4 2.9E-05 49.9 6.8 89 16-138 379-467 (568)
120 TIGR00478 tly hemolysin TlyA f 87.2 1.2 2.5E-05 46.2 5.8 75 524-608 75-150 (228)
121 PF06325 PrmA: Ribosomal prote 87.1 1.1 2.3E-05 48.2 5.6 51 518-570 155-205 (295)
122 PF13649 Methyltransf_25: Meth 87.0 1.3 2.8E-05 38.7 5.3 70 528-607 1-73 (101)
123 TIGR00477 tehB tellurite resis 87.0 1.8 3.9E-05 42.9 6.9 75 525-612 31-105 (195)
124 PRK11188 rrmJ 23S rRNA methylt 86.9 1.4 3E-05 44.5 6.1 73 524-608 51-124 (209)
125 PRK11933 yebU rRNA (cytosine-C 86.9 1.5 3.2E-05 50.0 7.0 86 524-617 113-199 (470)
126 PRK13944 protein-L-isoaspartat 86.8 2.3 5.1E-05 42.4 7.6 82 524-614 72-155 (205)
127 PRK10258 biotin biosynthesis p 86.7 1.4 3.1E-05 44.7 6.2 86 507-610 27-112 (251)
128 TIGR02072 BioC biotin biosynth 86.7 0.97 2.1E-05 44.5 4.8 77 525-614 35-111 (240)
129 PRK12335 tellurite resistance 86.6 1.7 3.6E-05 45.8 6.7 42 527-571 123-164 (287)
130 PRK13942 protein-L-isoaspartat 86.4 2 4.3E-05 43.3 6.9 77 523-608 75-152 (212)
131 PRK05785 hypothetical protein; 86.3 1.5 3.2E-05 44.8 6.0 71 524-613 51-122 (226)
132 PRK13255 thiopurine S-methyltr 85.7 1.8 3.9E-05 44.2 6.2 40 523-565 36-75 (218)
133 PLN02233 ubiquinone biosynthes 85.4 2.6 5.7E-05 43.8 7.5 77 524-609 73-153 (261)
134 PLN02781 Probable caffeoyl-CoA 85.2 1.4 3E-05 45.3 5.2 92 512-609 57-152 (234)
135 COG2226 UbiE Methylase involve 85.0 3.7 8E-05 42.9 8.2 83 524-615 51-133 (238)
136 PF01555 N6_N4_Mtase: DNA meth 84.9 1.1 2.4E-05 43.5 4.2 40 523-565 190-229 (231)
137 PF02005 TRM: N2,N2-dimethylgu 84.5 1 2.2E-05 49.8 4.1 62 506-570 32-95 (377)
138 KOG2561 Adaptor protein NUB1, 84.4 1.2 2.7E-05 50.2 4.6 141 17-197 308-456 (568)
139 PRK10742 putative methyltransf 84.4 3.5 7.6E-05 43.5 7.8 84 526-612 90-175 (250)
140 TIGR01934 MenG_MenH_UbiE ubiqu 84.3 3 6.4E-05 40.8 6.9 74 524-607 39-112 (223)
141 TIGR01983 UbiG ubiquinone bios 83.9 2.5 5.3E-05 41.9 6.2 43 524-569 45-87 (224)
142 PF01189 Nol1_Nop2_Fmu: NOL1/N 83.9 2.5 5.5E-05 44.8 6.6 88 524-617 85-172 (283)
143 PRK14103 trans-aconitate 2-met 83.8 2.1 4.5E-05 43.9 5.8 74 524-614 29-102 (255)
144 PRK00811 spermidine synthase; 83.5 2.2 4.8E-05 45.1 6.0 78 523-609 75-158 (283)
145 PLN02672 methionine S-methyltr 83.1 1.9 4.2E-05 53.7 6.0 46 525-571 119-164 (1082)
146 PRK11783 rlmL 23S rRNA m(2)G24 82.9 2.3 5E-05 50.6 6.4 54 551-610 258-312 (702)
147 PLN03196 MOC1-like protein; Pr 82.6 9.2 0.0002 43.8 10.8 24 172-195 342-365 (487)
148 PRK01683 trans-aconitate 2-met 82.3 3 6.5E-05 42.5 6.2 74 524-612 31-104 (258)
149 PRK13943 protein-L-isoaspartat 81.8 3.9 8.5E-05 44.4 7.2 77 524-608 80-156 (322)
150 PF02086 MethyltransfD12: D12 81.7 0.82 1.8E-05 46.3 1.9 50 516-568 10-61 (260)
151 PRK11727 23S rRNA mA1618 methy 80.9 4.7 0.0001 43.9 7.3 81 524-611 114-199 (321)
152 PF07499 RuvA_C: RuvA, C-termi 80.8 2.2 4.8E-05 33.5 3.6 32 173-204 6-39 (47)
153 COG0116 Predicted N6-adenine-s 80.7 4.8 0.0001 44.9 7.4 109 518-653 186-333 (381)
154 PRK00117 recX recombination re 80.4 5.3 0.00011 38.3 6.8 79 12-125 78-156 (157)
155 PRK00216 ubiE ubiquinone/menaq 80.2 4.5 9.7E-05 39.9 6.5 75 525-607 52-127 (239)
156 COG1041 Predicted DNA modifica 80.0 2.4 5.2E-05 46.6 4.8 77 524-611 197-274 (347)
157 TIGR00601 rad23 UV excision re 79.3 1.9 4.1E-05 47.9 3.8 174 15-198 159-365 (378)
158 TIGR00438 rrmJ cell division p 79.3 4.3 9.3E-05 39.7 6.0 74 523-609 31-106 (188)
159 PRK08317 hypothetical protein; 79.0 6.2 0.00013 38.6 7.0 45 524-568 19-63 (241)
160 PLN02336 phosphoethanolamine N 78.7 2.9 6.2E-05 46.8 5.1 80 525-615 38-117 (475)
161 PF01728 FtsJ: FtsJ-like methy 78.7 3 6.4E-05 40.4 4.6 81 524-615 23-107 (181)
162 PF03848 TehB: Tellurite resis 78.1 6.3 0.00014 40.0 6.8 41 525-568 31-71 (192)
163 TIGR02081 metW methionine bios 78.1 3 6.5E-05 41.0 4.5 81 518-614 7-88 (194)
164 PF01209 Ubie_methyltran: ubiE 77.5 4.6 0.0001 41.7 5.8 77 524-609 47-124 (233)
165 PRK04148 hypothetical protein; 77.4 5.6 0.00012 38.3 5.9 67 525-608 17-84 (134)
166 TIGR00417 speE spermidine synt 77.2 7.2 0.00016 40.8 7.2 47 524-571 72-118 (270)
167 PRK11873 arsM arsenite S-adeno 76.6 6.1 0.00013 40.8 6.4 77 523-608 76-153 (272)
168 PF01135 PCMT: Protein-L-isoas 76.6 3.9 8.4E-05 41.7 4.9 98 507-614 57-154 (209)
169 PRK06202 hypothetical protein; 76.3 7.5 0.00016 39.2 6.9 78 523-612 59-140 (232)
170 COG0030 KsgA Dimethyladenosine 75.3 6 0.00013 42.0 6.0 76 525-612 31-106 (259)
171 COG0144 Sun tRNA and rRNA cyto 75.2 8.3 0.00018 42.3 7.3 90 524-618 156-246 (355)
172 COG2813 RsmC 16S RNA G1207 met 75.1 8.8 0.00019 41.6 7.2 73 527-610 161-233 (300)
173 COG3963 Phospholipid N-methylt 74.7 7.7 0.00017 39.2 6.2 87 523-617 47-133 (194)
174 PF08241 Methyltransf_11: Meth 74.2 8.7 0.00019 31.8 5.7 67 529-609 1-68 (95)
175 cd04708 BAH_plantDCM_II BAH, o 74.1 1.2 2.6E-05 45.6 0.5 16 523-538 187-202 (202)
176 PRK13256 thiopurine S-methyltr 73.4 6.6 0.00014 40.7 5.7 40 524-566 43-82 (226)
177 PRK06922 hypothetical protein; 73.1 6.2 0.00014 46.9 6.0 86 518-612 413-498 (677)
178 PF03291 Pox_MCEL: mRNA cappin 72.9 5.9 0.00013 43.2 5.4 44 524-569 62-105 (331)
179 PF13489 Methyltransf_23: Meth 72.6 5.2 0.00011 36.7 4.3 40 522-564 20-59 (161)
180 TIGR03587 Pse_Me-ase pseudamin 72.1 8.1 0.00018 38.9 5.8 44 523-568 42-86 (204)
181 PRK14134 recX recombination re 71.9 33 0.00072 36.7 10.7 124 15-196 81-208 (283)
182 PRK13699 putative methylase; P 71.9 6 0.00013 40.7 5.0 44 523-569 162-205 (227)
183 PRK14600 ruvA Holliday junctio 71.8 7.4 0.00016 39.3 5.5 39 98-136 145-183 (186)
184 PRK15451 tRNA cmo(5)U34 methyl 71.7 9.5 0.0002 39.2 6.4 66 522-587 54-121 (247)
185 KOG1270 Methyltransferases [Co 71.6 6.7 0.00015 42.0 5.3 41 525-568 90-130 (282)
186 PF05185 PRMT5: PRMT5 arginine 70.2 8.7 0.00019 43.6 6.2 80 525-614 187-275 (448)
187 PRK03612 spermidine synthase; 69.9 11 0.00023 43.5 6.9 81 523-611 296-383 (521)
188 PRK14134 recX recombination re 69.2 82 0.0018 33.7 12.9 82 12-124 127-208 (283)
189 TIGR00601 rad23 UV excision re 67.5 7 0.00015 43.5 4.6 42 95-138 153-194 (378)
190 PF02631 RecX: RecX family; I 67.5 98 0.0021 28.4 11.5 112 20-193 2-118 (121)
191 PRK11524 putative methyltransf 66.9 7.3 0.00016 41.1 4.5 42 523-567 207-248 (284)
192 PF07021 MetW: Methionine bios 66.4 11 0.00024 38.5 5.3 77 515-607 4-81 (193)
193 PF05724 TPMT: Thiopurine S-me 66.3 7.1 0.00015 40.0 4.1 74 524-607 37-122 (218)
194 PRK14136 recX recombination re 65.7 77 0.0017 34.7 11.8 76 99-197 229-305 (309)
195 PRK14603 ruvA Holliday junctio 65.6 13 0.00029 37.7 5.8 39 98-136 152-193 (197)
196 PRK15068 tRNA mo(5)U34 methylt 65.5 16 0.00034 39.5 6.7 36 525-562 123-158 (322)
197 PRK11088 rrmA 23S rRNA methylt 65.2 12 0.00026 38.9 5.6 70 525-607 86-157 (272)
198 COG2242 CobL Precorrin-6B meth 64.6 23 0.00049 36.1 7.2 56 515-573 27-82 (187)
199 PRK04266 fibrillarin; Provisio 64.4 19 0.00042 37.0 6.9 77 524-608 72-148 (226)
200 COG3897 Predicted methyltransf 63.9 6.4 0.00014 40.6 3.1 80 524-617 79-158 (218)
201 TIGR00740 methyltransferase, p 63.6 22 0.00048 36.0 7.0 82 523-614 52-135 (239)
202 PF02536 mTERF: mTERF; InterP 63.0 15 0.00033 39.0 6.0 23 172-194 245-267 (345)
203 PLN02476 O-methyltransferase 62.7 19 0.00041 38.6 6.5 93 512-610 107-203 (278)
204 PF03216 Rhabdo_ncap_2: Rhabdo 61.9 8.9 0.00019 41.4 3.9 82 15-133 32-114 (357)
205 PTZ00146 fibrillarin; Provisio 60.5 22 0.00049 38.4 6.7 80 522-609 130-210 (293)
206 PRK14606 ruvA Holliday junctio 59.8 18 0.00038 36.6 5.5 39 98-136 143-182 (188)
207 PLN02366 spermidine synthase 59.3 22 0.00048 38.4 6.5 80 523-609 90-173 (308)
208 TIGR00084 ruvA Holliday juncti 59.0 18 0.00038 36.6 5.3 40 98-137 147-188 (191)
209 COG0293 FtsJ 23S rRNA methylas 58.0 21 0.00046 36.7 5.8 71 522-606 43-116 (205)
210 TIGR01444 fkbM_fam methyltrans 57.6 22 0.00047 32.6 5.3 44 527-571 1-44 (143)
211 KOG0820 Ribosomal RNA adenine 57.6 28 0.00062 37.7 6.7 84 519-615 53-137 (315)
212 PLN03196 MOC1-like protein; Pr 57.1 80 0.0017 36.4 10.8 88 14-122 126-220 (487)
213 PRK14602 ruvA Holliday junctio 57.0 22 0.00048 36.3 5.7 40 98-137 155-197 (203)
214 smart00828 PKS_MT Methyltransf 56.8 30 0.00066 34.3 6.6 42 527-569 2-43 (224)
215 PRK14137 recX recombination re 56.5 1.4E+02 0.003 30.5 11.2 76 100-197 106-182 (195)
216 COG2521 Predicted archaeal met 56.2 7.2 0.00016 41.3 2.1 100 524-652 134-237 (287)
217 TIGR00452 methyltransferase, p 56.2 43 0.00094 36.4 8.1 37 525-563 122-158 (314)
218 PRK00050 16S rRNA m(4)C1402 me 54.1 26 0.00056 37.9 5.9 79 525-609 20-98 (296)
219 PRK14601 ruvA Holliday junctio 52.0 28 0.00061 35.1 5.4 38 98-136 142-179 (183)
220 PRK04457 spermidine synthase; 51.5 22 0.00048 37.2 4.8 76 524-607 66-142 (262)
221 PRK14136 recX recombination re 51.4 41 0.00088 36.8 6.8 77 13-125 229-305 (309)
222 KOG1975 mRNA cap methyltransfe 51.2 5.6 0.00012 43.8 0.4 114 486-611 79-206 (389)
223 KOG2187 tRNA uracil-5-methyltr 51.0 20 0.00044 41.6 4.7 59 503-564 358-420 (534)
224 PRK14605 ruvA Holliday junctio 50.9 31 0.00068 34.9 5.6 39 98-136 148-188 (194)
225 PLN03075 nicotianamine synthas 50.7 84 0.0018 34.1 9.1 77 524-608 123-202 (296)
226 PLN02490 MPBQ/MSBQ methyltrans 50.1 34 0.00074 37.6 6.1 73 524-609 113-186 (340)
227 PRK11705 cyclopropane fatty ac 50.0 34 0.00074 37.9 6.2 41 524-567 167-208 (383)
228 PLN02336 phosphoethanolamine N 49.6 37 0.0008 38.1 6.5 41 524-567 266-307 (475)
229 KOG1663 O-methyltransferase [S 49.4 41 0.00089 35.5 6.2 98 523-655 74-175 (237)
230 PF02536 mTERF: mTERF; InterP 48.3 22 0.00047 37.9 4.2 25 98-122 243-267 (345)
231 PRK14121 tRNA (guanine-N(7)-)- 47.7 37 0.00079 38.2 6.0 82 524-612 122-203 (390)
232 KOG2198 tRNA cytosine-5-methyl 47.6 48 0.001 37.1 6.7 127 476-616 120-251 (375)
233 PF02631 RecX: RecX family; I 46.9 51 0.0011 30.2 5.9 72 13-121 46-118 (121)
234 PF02353 CMAS: Mycolic acid cy 45.5 49 0.0011 35.1 6.3 43 523-568 61-104 (273)
235 TIGR03438 probable methyltrans 44.9 47 0.001 35.3 6.1 87 523-615 62-152 (301)
236 PF07223 DUF1421: Protein of u 44.3 20 0.00044 39.8 3.3 27 98-124 321-347 (358)
237 PF10294 Methyltransf_16: Puta 43.9 76 0.0016 31.1 6.9 81 524-610 45-128 (173)
238 PRK14600 ruvA Holliday junctio 43.4 25 0.00055 35.5 3.6 34 172-205 147-180 (186)
239 COG1867 TRM1 N2,N2-dimethylgua 42.9 48 0.001 37.2 5.9 43 525-570 53-97 (380)
240 PRK14604 ruvA Holliday junctio 42.8 47 0.001 33.8 5.4 39 98-136 149-189 (195)
241 COG3243 PhaC Poly(3-hydroxyalk 41.4 7.9 0.00017 43.8 -0.4 74 331-412 332-412 (445)
242 KOG1271 Methyltransferases [Ge 41.2 40 0.00087 34.8 4.6 80 526-615 69-150 (227)
243 PF14872 GHL5: Hypothetical gl 40.4 15 0.00032 43.7 1.6 28 328-355 423-450 (811)
244 PRK11760 putative 23S rRNA C24 39.5 53 0.0011 36.6 5.5 39 522-563 209-247 (357)
245 KOG4169 15-hydroxyprostaglandi 39.3 42 0.00091 35.7 4.5 73 532-609 14-91 (261)
246 PF05401 NodS: Nodulation prot 39.0 46 0.00099 34.3 4.6 69 526-608 45-113 (201)
247 cd01968 Nitrogenase_NifE_I Nit 36.8 1E+02 0.0022 34.2 7.3 128 474-612 221-367 (410)
248 COG0863 DNA modification methy 36.1 82 0.0018 32.5 6.1 49 519-570 217-265 (302)
249 KOG2078 tRNA modification enzy 35.3 30 0.00065 39.5 2.9 45 521-568 246-290 (495)
250 PRK00116 ruvA Holliday junctio 34.2 69 0.0015 32.3 5.1 39 98-136 149-188 (192)
251 PF04695 Pex14_N: Peroxisomal 33.9 63 0.0014 30.9 4.5 30 98-127 23-52 (136)
252 PRK14603 ruvA Holliday junctio 33.9 46 0.001 33.9 3.8 33 172-204 154-189 (197)
253 COG2230 Cfa Cyclopropane fatty 33.8 1.1E+02 0.0023 33.3 6.6 65 522-589 70-136 (283)
254 KOG2689 Predicted ubiquitin re 33.7 34 0.00074 36.8 2.9 33 17-49 5-37 (290)
255 PF10440 WIYLD: Ubiquitin-bind 32.5 78 0.0017 27.2 4.3 39 15-53 14-63 (65)
256 PRK01581 speE spermidine synth 31.8 1.1E+02 0.0023 34.5 6.4 80 523-610 149-235 (374)
257 PRK14602 ruvA Holliday junctio 31.7 53 0.0011 33.6 3.8 34 172-205 157-193 (203)
258 PF05219 DREV: DREV methyltran 31.7 75 0.0016 34.1 5.0 77 474-567 58-134 (265)
259 PRK14606 ruvA Holliday junctio 31.5 48 0.001 33.5 3.4 33 172-204 145-178 (188)
260 COG0632 RuvA Holliday junction 30.9 68 0.0015 33.0 4.4 34 102-135 160-196 (201)
261 COG0421 SpeE Spermidine syntha 30.7 69 0.0015 34.4 4.6 91 506-607 60-155 (282)
262 TIGR01283 nifE nitrogenase mol 30.3 2.1E+02 0.0046 32.3 8.7 131 474-615 260-409 (456)
263 KOG1122 tRNA and rRNA cytosine 29.5 1.4E+02 0.0029 34.4 6.7 84 524-617 241-328 (460)
264 PRK14605 ruvA Holliday junctio 29.3 58 0.0013 33.0 3.6 33 173-205 151-185 (194)
265 KOG0418 Ubiquitin-protein liga 29.3 52 0.0011 33.7 3.2 28 98-125 162-189 (200)
266 PRK14478 nitrogenase molybdenu 27.6 2.4E+02 0.0051 32.3 8.5 128 474-612 254-404 (475)
267 PRK14601 ruvA Holliday junctio 27.4 63 0.0014 32.6 3.5 32 172-204 144-175 (183)
268 KOG1099 SAM-dependent methyltr 27.1 85 0.0018 33.5 4.4 94 497-610 21-125 (294)
269 KOG0011 Nucleotide excision re 24.9 79 0.0017 35.0 3.8 41 96-138 133-173 (340)
270 KOG1500 Protein arginine N-met 24.6 1.4E+02 0.0029 33.7 5.5 50 511-563 163-214 (517)
271 PRK14137 recX recombination re 24.5 2.3E+02 0.005 28.9 6.8 75 14-124 106-181 (195)
272 COG0632 RuvA Holliday junction 24.4 68 0.0015 33.0 3.1 31 174-204 160-193 (201)
273 PF10440 WIYLD: Ubiquitin-bind 24.3 1.9E+02 0.0041 24.9 5.2 43 98-140 11-63 (65)
274 TIGR01839 PHA_synth_II poly(R) 24.1 28 0.0006 40.9 0.3 37 369-412 488-525 (560)
275 TIGR01838 PHA_synth_I poly(R)- 24.0 28 0.0006 40.6 0.2 38 368-412 461-499 (532)
276 TIGR00084 ruvA Holliday juncti 23.8 74 0.0016 32.2 3.2 34 173-206 150-185 (191)
277 KOG0011 Nucleotide excision re 23.2 74 0.0016 35.2 3.2 36 15-51 138-173 (340)
278 KOG1499 Protein arginine N-met 22.6 1E+02 0.0022 34.4 4.1 40 521-563 58-97 (346)
279 PRK13901 ruvA Holliday junctio 22.2 1E+02 0.0022 31.6 3.8 25 98-122 144-168 (196)
280 PLN02823 spermine synthase 21.8 2.4E+02 0.0053 31.0 6.9 78 524-609 103-184 (336)
281 KOG3191 Predicted N6-DNA-methy 21.6 2.5E+02 0.0054 29.2 6.3 87 516-615 37-124 (209)
282 cd01971 Nitrogenase_VnfN_like 21.5 4.1E+02 0.0088 29.9 8.7 36 474-509 223-261 (427)
283 COG1189 Predicted rRNA methyla 21.2 1.4E+02 0.003 31.8 4.7 65 522-593 77-142 (245)
284 PF02390 Methyltransf_4: Putat 20.2 2.1E+02 0.0046 28.8 5.6 84 527-616 20-103 (195)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.90 E-value=5.5e-24 Score=217.63 Aligned_cols=105 Identities=22% Similarity=0.396 Sum_probs=87.6
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 605 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 605 (658)
||||||||||||+++||+++|| ++++++|+|+.|++||+.+|. .+..+||++++.+.|+. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5899999999999999999996 679999999999999999774 36789999999886642 59999
Q ss_pred EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+||||||+||.+|+ +.|++|+|+.||++|+|+|+++||+.
T Consensus 66 ~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~~~v~~~~Pk~ 105 (335)
T PF00145_consen 66 IGGPPCQGFSIAGK------------RKGFDDPRNSLFFEFLRIVKELKPKY 105 (335)
T ss_dssp EEE---TTTSTTST------------HHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred EeccCCceEecccc------------ccccccccchhhHHHHHHHhhccceE
Confidence 99999999998864 35688999999999999999999974
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.89 E-value=8.7e-24 Score=223.28 Aligned_cols=109 Identities=19% Similarity=0.342 Sum_probs=95.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
..+++|||||||||+++||+.+|| ++++++|||+.|++||++++.. ..++..||.++..+.+... ++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-----~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-----DVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-----CCC
Confidence 468999999999999999999996 6799999999999999986532 3467899999998877432 799
Q ss_pred EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172 604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656 (658)
Q Consensus 604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~ 656 (658)
+|+||||||+||.+|+ |.|++|+|++||++|+|+|..+||+
T Consensus 70 vligGpPCQ~FS~aG~------------r~~~~D~R~~L~~~~~r~I~~~~P~ 110 (328)
T COG0270 70 VLIGGPPCQDFSIAGK------------RRGYDDPRGSLFLEFIRLIEQLRPK 110 (328)
T ss_pred EEEeCCCCcchhhcCc------------ccCCcCccceeeHHHHHHHHhhCCC
Confidence 9999999999998864 3679999999999999999999985
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.86 E-value=3.7e-22 Score=220.20 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=97.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL 595 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie--------~l 595 (658)
.++++|||||||||+++||+++|+ ++++++|+|+.|++||+.+|.. .+.+.+..+||++++...+. ..
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence 368999999999999999999998 5799999999999999998742 22344567899999854321 11
Q ss_pred h-hccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006172 596 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 596 ~-~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~-D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+ ...+++|||+||||||+||.+|+.+.. -.+.+.|+. |+|++||++|+|+|+++||++
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~----~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~ 222 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFECETQGTLFFDVARIIDAKRPAI 222 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhcccccc----cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence 1 234689999999999999998753210 012334664 889999999999999999975
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.85 E-value=1.3e-21 Score=202.29 Aligned_cols=106 Identities=19% Similarity=0.360 Sum_probs=92.1
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 605 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 605 (658)
++|+|||||+||+++||+++|+ ++++++|+|+.|+++|+++|.. .++.+||++++..++ .+++|+|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence 5799999999999999999997 5799999999999999987642 256899999987643 3679999
Q ss_pred EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+||||||+||.+|+ +.|.+|+|+.||++|+|+|+++||++
T Consensus 67 ~~gpPCq~fS~ag~------------~~~~~d~r~~L~~~~~~~i~~~~P~~ 106 (275)
T cd00315 67 TGGFPCQPFSIAGK------------RKGFEDTRGTLFFEIIRILKEKKPKY 106 (275)
T ss_pred EeCCCChhhhHHhh------------cCCCCCchHHHHHHHHHHHHhcCCCE
Confidence 99999999998764 25678999999999999999999974
No 5
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1.4e-21 Score=205.55 Aligned_cols=103 Identities=17% Similarity=0.362 Sum_probs=89.0
Q ss_pred ccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 006172 528 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 607 (658)
Q Consensus 528 vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 607 (658)
||||||||||+++||+++|| ++++++|+++.|+++|+.+|. + .++.+||++++..++ +++|||+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 68999999999999999997 579999999999999998653 2 356789999986543 47999999
Q ss_pred cCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 608 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 608 GpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
|||||+||.+|+ +.|++|+|+.||++|+|+|+++||++
T Consensus 66 g~PCq~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIAGK------------RKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchhcc------------cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 999999998764 35688999999999999999999864
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.24 E-value=1e-11 Score=126.66 Aligned_cols=111 Identities=18% Similarity=0.304 Sum_probs=95.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+.++|++|+||+||+..+|+.+-|+-.+|+|+|++..|..+|+.+ ..+.++...||+.|+.+++..+ .+|
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-----~h~~L~k~~~I~~lt~kefd~l-----~~~ 71 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-----YHSNLVKTRNIQSLTVKEFDKL-----QAN 71 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-----cccchhhccccceeeHhhhhhc-----ccc
Confidence 358999999999999999999999999999999999999999764 3345677889999999988765 689
Q ss_pred EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172 604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656 (658)
Q Consensus 604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~ 656 (658)
++.-.||||+|.-.| .++-+.|+|+..|.+.+.+|-+++..
T Consensus 72 m~lMSPpCQPfTRiG------------~q~D~~D~Rs~aflhil~~lP~~q~L 112 (338)
T KOG0919|consen 72 MLLMSPPCQPFTRIG------------LQRDTEDKRSDAFLHILGLLPECQEL 112 (338)
T ss_pred eEeeCCCCCchhhhc------------ccccccCchhHHHHHHHhhhhhhhhh
Confidence 999999999999443 23448899999999999999888653
No 7
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.18 E-value=2.4e-11 Score=126.11 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-cccccccccc-ccCCCCCCc-----CCCCCCC
Q 006172 329 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRF-----HIPPEPP 393 (658)
Q Consensus 329 ~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~-hNLP~~~R~-----~~~p~~p 393 (658)
.+|++|++|||..+-. ..+..|.+.| |.+.+.++|+..| .||.|+|.|+ .-..+.... |-.+.++
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999999865 4566776666 6789999999999 7889999995 222222211 1122346
Q ss_pred CcccccccCCCccCCCcCCCcccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCC
Q 006172 394 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD 473 (658)
Q Consensus 394 ~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~g~~~~~ple 473 (658)
.|+.|+| ++..|+. -..|+++.... ... .+... ..-+|..+.+.+.|+
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT 229 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT 229 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence 8999999 5677776 45677766421 000 00000 001145677899999
Q ss_pred hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172 474 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 518 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL 518 (658)
+.|+.||+|||++|+-.++ +.+.+++.+||+..+..++++...+
T Consensus 230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i 273 (275)
T cd00315 230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI 273 (275)
T ss_pred HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence 9999999999999987543 8999999999999998887765443
No 8
>PRK10458 DNA cytosine methylase; Provisional
Probab=98.44 E-value=1.6e-07 Score=104.94 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=46.8
Q ss_pred ccccCCCChhhHHHHhcCC--CCCcccCCCChHHHHHhhhhhhcccchhhhcccccccC
Q 006172 466 AYKLGPVDPEHIELILGYP--SNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 522 (658)
Q Consensus 466 ~~~~~ple~~E~E~i~GfP--~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f 522 (658)
.++++.|+|.|+-||+||| ..++=...++.++.||.+|||..|+++..++..|+.+.
T Consensus 398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~ 456 (467)
T PRK10458 398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI 456 (467)
T ss_pred cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 3578999999999999995 43332247899999999999999999998887777643
No 9
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.29 E-value=1.4e-07 Score=96.93 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=42.1
Q ss_pred eecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccc
Q 006172 463 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 519 (658)
Q Consensus 463 W~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK 519 (658)
++.+.+.+.|++.|+.||+|||++|.- ..+.+++++.+||+..+....++...|+
T Consensus 280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~ 334 (335)
T PF00145_consen 280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK 334 (335)
T ss_dssp EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence 456789999999999999999999985 5566699999999998888877765543
No 10
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=4.5e-06 Score=88.65 Aligned_cols=179 Identities=13% Similarity=0.169 Sum_probs=95.6
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccccCC---CCCCcCCCCC----
Q 006172 328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE---- 391 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~hNLP---~~~R~~~~p~---- 391 (658)
..+|.+|++|||..+-. ..+..|-+-| |.+...++||..| .||+|+|.|+--.- .... ...|.
T Consensus 98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~-~~~p~~~~~ 176 (315)
T TIGR00675 98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLN-FEFPKPIYV 176 (315)
T ss_pred hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcC-CCCCCCccc
Confidence 45899999999987643 3566665555 6778899999999 99999999876322 1111 12233
Q ss_pred -CCCcccccccCCC----ccCCCcCCCcccceecccC-------------CchhHHHHHHHHHHhhccCCCchhhhHHHH
Q 006172 392 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSGT-------------SGISQLCERFEKLLRDSRGVLSSQQQRDIL 453 (658)
Q Consensus 392 -~p~ti~e~lp~~~----~~wp~wd~r~k~~ci~t~~-------------~~~~~l~~~i~~~~~~~~~~~~~~~q~~il 453 (658)
...||.|++.... .|+++-...+.+..+.... ..........+++..+.... ...+..+.
T Consensus 177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~ 254 (315)
T TIGR00675 177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL 254 (315)
T ss_pred ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence 2567888775321 1111110000000000000 00000000000111100000 00000000
Q ss_pred HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhh
Q 006172 454 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGY 513 (658)
Q Consensus 454 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~ 513 (658)
..+. .+.. +-+.+.+.|++.|.-||+|||++|. |..+.+..++.+||+.-+....+
T Consensus 255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~--f~~s~~~~~~qiGNAVPp~la~~ 310 (315)
T TIGR00675 255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFK--FPVSDSQLYKQAGNAVVVPVIEA 310 (315)
T ss_pred eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccE--eCCCHHHHHhhhCCcccHHHHHH
Confidence 0011 0111 2356779999999999999999996 45899999999999986654443
No 11
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.72 E-value=7.3e-05 Score=66.29 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
|.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|++++.. . ...+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence 4689999999999999999999 2 35789999999999888876654321 22355677765531 0 1237899
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|++-||.-+..
T Consensus 73 ~Iv~npP~~~~~ 84 (117)
T PF13659_consen 73 LIVTNPPYGPRS 84 (117)
T ss_dssp EEEE--STTSBT
T ss_pred EEEECCCCcccc
Confidence 999999986543
No 12
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.36 E-value=0.00016 Score=74.54 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
..+||||+||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+ ..++.+|+.+.-...+ .+.||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~------~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL------RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc------CCCEeE
Confidence 458999999999999988754211 236889999999988887764322 2345677654221111 257999
Q ss_pred EEecCCCCCccc
Q 006172 605 VICQNSVPQIPN 616 (658)
Q Consensus 605 VIGGpPCQ~FS~ 616 (658)
|+.-|||.+.+.
T Consensus 157 Vv~NPPy~~~~~ 168 (251)
T TIGR03704 157 LAANAPYVPTDA 168 (251)
T ss_pred EEECCCCCCchh
Confidence 999999998763
No 13
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0001 Score=78.76 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=97.8
Q ss_pred cCCCCccccccccccchh---hHHHHhhhhc----cCCceeecccc-cccccccccccc-----cCCCCCCcCCCCC---
Q 006172 328 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE--- 391 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~~---~w~~is~fL~----~~~Pe~vds~~-fsaa~R~r~y~h-----NLP~~~R~~~~p~--- 391 (658)
..+|.||++|||..|-.. .|+.|.+-|. .+...++||++ --||+|.|-|+. |+-...--. .+.
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~ 184 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG 184 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence 456799999999999886 8888888774 45566777765 479999999999 777664311 111
Q ss_pred CCCcccccc-----cCCCccCC-CcCCCcccceecccCC----chhH-----HHHHHH--HHHhhcc-CCCchhhhHHHH
Q 006172 392 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTS----GISQ-----LCERFE--KLLRDSR-GVLSSQQQRDIL 453 (658)
Q Consensus 392 ~p~ti~e~l-----p~~~~~wp-~wd~r~k~~ci~t~~~----~~~~-----l~~~i~--~~~~~~~-~~~~~~~q~~il 453 (658)
...++-+++ +.+..-|. .+...-+.+-+..... .... ...+.. ....+.. ..+...+ .
T Consensus 185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t~----~ 260 (328)
T COG0270 185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKNKGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPTV----R 260 (328)
T ss_pred cccchhhhhhhccCcchhhhhccccccccccccCchhhhccccccccccccccccccCCCceeEeCCCCCCCcee----e
Confidence 022222221 11111000 0000000000000000 0000 000000 0000000 0000000 0
Q ss_pred HhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172 454 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 520 (658)
Q Consensus 454 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~ 520 (658)
...+-.=+-+...+.|++.|+-+|+|||+.|.=.+ +.+.+++.+||+..+....++..-+..
T Consensus 261 ---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~ 322 (328)
T COG0270 261 ---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK 322 (328)
T ss_pred ---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence 11111122355667799999999999999998765 999999999999988877776655443
No 14
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.28 E-value=0.00033 Score=69.39 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=49.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||||||.|.+.+=.-.-|.. -|+.||.++.+.++++.+....+... ..++..|... .+..+......|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f 115 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF 115 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence 5688999999999887644555764 58899999999999999887654221 1122333221 122222234789
Q ss_pred cEEEecCCC
Q 006172 603 DFVICQNSV 611 (658)
Q Consensus 603 DLVIGGpPC 611 (658)
|||.--||=
T Consensus 116 DiIflDPPY 124 (183)
T PF03602_consen 116 DIIFLDPPY 124 (183)
T ss_dssp EEEEE--ST
T ss_pred eEEEECCCc
Confidence 999999983
No 15
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.15 E-value=0.0006 Score=73.89 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=68.8
Q ss_pred hcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Cccccccc
Q 006172 506 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI 584 (658)
Q Consensus 506 fqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI 584 (658)
|+.-...-+..+++..++ |-+|+|+|||+|-+++-.-+.|-. + |+|+||||.|.+-++.+-.-+.-.+ ...+++|.
T Consensus 171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 444444445555655554 899999999999999999999954 4 8999999999999988754322223 22467787
Q ss_pred cccChhhHHHhhhccCCccEEEecCCC
Q 006172 585 QALTTKKFESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 585 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 611 (658)
+++... .+.+|=||-|-|=
T Consensus 248 rev~~~--------~~~aDrIim~~p~ 266 (341)
T COG2520 248 REVAPE--------LGVADRIIMGLPK 266 (341)
T ss_pred HHhhhc--------cccCCEEEeCCCC
Confidence 766543 2679988888884
No 16
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.12 E-value=0.00095 Score=67.34 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=49.9
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+..+-+|+|+|||+|.+++-+-+.+ +.+.|+|+|++|.|.+-++.+-...+-.+.+ ++.+|.+++.. .+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~ 168 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG 168 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence 4567889999999999999888743 2356899999999999998875543333322 35677766643 24
Q ss_pred CccEEEecCCCC
Q 006172 601 SIDFVICQNSVP 612 (658)
Q Consensus 601 ~~DLVIGGpPCQ 612 (658)
.+|-|+.+.|=.
T Consensus 169 ~~drvim~lp~~ 180 (200)
T PF02475_consen 169 KFDRVIMNLPES 180 (200)
T ss_dssp -EEEEEE--TSS
T ss_pred ccCEEEECChHH
Confidence 689899888733
No 17
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.11 E-value=0.0011 Score=65.79 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=56.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||||||.|.+.+.+-..|-. .+++||+++.+.++.+.++...+... ..++.+|+.+. +..+......+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence 3568999999999999999988864 58899999999999998876543211 12345555321 11111111237
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+--||=.
T Consensus 123 dvv~~DPPy~ 132 (189)
T TIGR00095 123 NVIYLDPPFF 132 (189)
T ss_pred eEEEECcCCC
Confidence 8888888753
No 18
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.96 E-value=0.0018 Score=71.38 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||||||+||+++..-..|- .-+++||+++.+....+.++..++.. ...++.+|+.++- ..+....+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHhcCCC
Confidence 457899999999999887666664 35789999999999988887654321 1234567765432 222222357
Q ss_pred ccEEEecCCC
Q 006172 602 IDFVICQNSV 611 (658)
Q Consensus 602 ~DLVIGGpPC 611 (658)
||+||--||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 19
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.91 E-value=0.0011 Score=65.02 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=49.1
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC-ccE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS-IDF 604 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~-~DL 604 (658)
+|||+|||+||=++.|-+.+ .-|++||+|+...+..+++-.-.+ .....++.+|..++-.. + +... +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~--~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----L--KSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B--------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----c--cccccccE
Confidence 58999999999999999996 358999999999888877543321 11122345555443211 0 1122 799
Q ss_pred EEecCCCCCcccC
Q 006172 605 VICQNSVPQIPNS 617 (658)
Q Consensus 605 VIGGpPCQ~FS~a 617 (658)
|...||=-+.+..
T Consensus 73 vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 73 VFLSPPWGGPSYS 85 (163)
T ss_dssp EEE---BSSGGGG
T ss_pred EEECCCCCCcccc
Confidence 9999998887754
No 20
>PHA03412 putative methyltransferase; Provisional
Probab=96.80 E-value=0.002 Score=66.85 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcC--C
Q 006172 470 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I 547 (658)
Q Consensus 470 ~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aG--i 547 (658)
++|+-+|.|-++ .||+-. ...-.+.+|-.|....+++++... . . .+.+|||+-||.|.+.+.+-+.- -
T Consensus 5 ~~~~~~~~~f~~---~n~~~~----~~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~ 74 (241)
T PHA03412 5 KALTYEEKLFII---ENFHEG----AFTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA 74 (241)
T ss_pred ccccHHHHHHHH---hhcccc----cccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence 456777777776 467652 222335668888888888876422 1 2 35799999999999999876531 0
Q ss_pred ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172 548 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 548 ~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 615 (658)
+-..+.+||||+.+.+..+.+. ....++..|+..... .+.||+||+=||=-...
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence 1125789999999988776532 223456677764321 14799999999866543
No 21
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.79 E-value=0.0038 Score=62.78 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=52.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+|||||||.|.+.+.+-..|. .-++++|+++.+.+..+.+....+.....++.+|+.+. +. ...+.+|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence 46899999999999985433343 34789999999999998877554322223445555321 11 11246999
Q ss_pred EEecCC
Q 006172 605 VICQNS 610 (658)
Q Consensus 605 VIGGpP 610 (658)
|+--||
T Consensus 125 V~~DPP 130 (199)
T PRK10909 125 VFVDPP 130 (199)
T ss_pred EEECCC
Confidence 999999
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.66 E-value=0.0045 Score=58.15 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=61.9
Q ss_pred CCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+||||-||.|-+...|. +++... -++++|+++.+.+..+......+.....++.+||.++... ++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 56899999999999999999 565433 3789999999998888765544333344677899886643 31 579
Q ss_pred cEEEecCCCCCcc
Q 006172 603 DFVICQNSVPQIP 615 (658)
Q Consensus 603 DLVIGGpPCQ~FS 615 (658)
|+|+...++..+.
T Consensus 75 D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 75 DIIISNGVLHHFP 87 (152)
T ss_dssp EEEEEESTGGGTS
T ss_pred eEEEEcCchhhcc
Confidence 9999998885443
No 23
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.53 E-value=0.0036 Score=68.32 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+|||||||+|.+++.+...|- -+++||+++.+.+..+.+....+.....+..+|+.++... ..+.+|+
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence 35799999999999998887763 4789999999999888876543221222455666443211 1145899
Q ss_pred EEecCC
Q 006172 605 VICQNS 610 (658)
Q Consensus 605 VIGGpP 610 (658)
|+-=||
T Consensus 304 vi~DPP 309 (374)
T TIGR02085 304 VLVNPP 309 (374)
T ss_pred EEECCC
Confidence 999998
No 24
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.53 E-value=0.0044 Score=45.67 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
.++++.|+.|||+++.+..|+.+||.+ ++.-+++|+
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~ 37 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL 37 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence 357899999999999999999999986 567777663
No 25
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.52 E-value=0.0051 Score=65.37 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+|||||||.|.+++.|.+.|- -++++|+++.+.+..+.+....+.....++.+|+.++... ..+.+|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence 46899999999999999998774 4789999999988877765433221223455666543210 1246899
Q ss_pred EEecCCCCCc
Q 006172 605 VICQNSVPQI 614 (658)
Q Consensus 605 VIGGpPCQ~F 614 (658)
|+--||+.+.
T Consensus 244 Vv~dPPr~G~ 253 (315)
T PRK03522 244 VLVNPPRRGI 253 (315)
T ss_pred EEECCCCCCc
Confidence 9999997764
No 26
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.45 E-value=0.0088 Score=57.86 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
..-++|||-||+|-+++.+.+.+-..+ +.++|+++.+....+.++...+-....+...|+.+-- ..+.||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence 456899999999999999999887644 7899999999999988876543221223345543211 136899
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+..||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 27
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.44 E-value=0.013 Score=62.51 Aligned_cols=82 Identities=21% Similarity=0.182 Sum_probs=57.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+|||.|++.+.+...|.. ++++|+|+...+..+.+....+.....+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 34678999999999998777777753 688999998777666554433222223456777765421 2479
Q ss_pred cEEEecCCCCCcc
Q 006172 603 DFVICQNSVPQIP 615 (658)
Q Consensus 603 DLVIGGpPCQ~FS 615 (658)
|+|+.-|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999986544
No 28
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.43 E-value=0.0063 Score=45.31 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 135 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I 135 (658)
..+++..|+.|||+++.+..|+..||-+ ++.=+++|
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L 37 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence 4578999999999999999999999984 56666654
No 29
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.43 E-value=0.0069 Score=62.91 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||++||.||.++.+..+--+--.++++|+++...+.++.+....+.....+...|.+.+. ...+.||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~--------~~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG--------AAVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh--------hhccCCC
Confidence 45789999999999998876531111148899999999888887665433222223345544332 1134699
Q ss_pred EEEecCCCCCccc
Q 006172 604 FVICQNSVPQIPN 616 (658)
Q Consensus 604 LVIGGpPCQ~FS~ 616 (658)
+|+--+||.+...
T Consensus 143 ~Vl~D~Pcsg~G~ 155 (264)
T TIGR00446 143 AILLDAPCSGEGV 155 (264)
T ss_pred EEEEcCCCCCCcc
Confidence 9999999986654
No 30
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.34 E-value=0.013 Score=59.89 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+.. ..+.||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence 4578999999999999999877522 357899999999888877654111122224455552211 125799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-||+-+.+
T Consensus 178 ~Iv~npPy~~~~ 189 (275)
T PRK09328 178 LIVSNPPYIPEA 189 (275)
T ss_pred EEEECCCcCCcc
Confidence 999999997765
No 31
>PHA03411 putative methyltransferase; Provisional
Probab=96.31 E-value=0.0072 Score=64.04 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=65.1
Q ss_pred hhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc
Q 006172 503 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQ 580 (658)
Q Consensus 503 gnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~ 580 (658)
|-.|..+.+.++| ++... .+-+||||+||+|.+.+.+... +. -++++|+++.+.+..+..+ +...++
T Consensus 46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~-----~~v~~v 114 (279)
T PHA03411 46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLL-----PEAEWI 114 (279)
T ss_pred eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhC-----cCCEEE
Confidence 6677888888887 34332 2358999999999998777543 33 4789999999887766532 223356
Q ss_pred cccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172 581 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 581 ~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 615 (658)
.+|+.++.. ...||+|++-||-....
T Consensus 115 ~~D~~e~~~---------~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 115 TSDVFEFES---------NEKFDVVISNPPFGKIN 140 (279)
T ss_pred ECchhhhcc---------cCCCcEEEEcCCccccC
Confidence 677765431 24699999999987654
No 32
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.23 E-value=0.01 Score=43.83 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
.++++.|+.|||+++.+..|+..|+-+ ++.-+++|+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 357899999999999999999999985 577777775
No 33
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.15 E-value=0.012 Score=56.57 Aligned_cols=76 Identities=17% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-++||++||.|.++..+.+.+- .++++|+|+.+...++.++... ....++.+|+.++... ...+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence 346899999999999999888763 4789999999998888765431 1223567777766421 12589
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|++.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999998854
No 34
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.14 E-value=0.015 Score=64.23 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||||||+|.+++.|.+.+- .++++|+++.+.+..+.+....+.....++.+|+.++ +..+....+.+|
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence 346899999999999999988763 4789999999998888766443322333556666542 111111124589
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+--||.-+
T Consensus 365 ~vi~dPPr~G 374 (431)
T TIGR00479 365 VLLLDPPRKG 374 (431)
T ss_pred EEEECcCCCC
Confidence 9999999765
No 35
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.04 E-value=0.013 Score=65.28 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=58.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||++||.||.+..+-++ +-. ..++++|+++......+.+....+.....++.+|..++.. .+.|
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~f 319 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNR-GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQP 319 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCC
Confidence 3578999999999988766542 211 2478999999998888876654332222244566655431 2469
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|+|+--+||.+....
T Consensus 320 D~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 320 DAILLDAPCTGTGVL 334 (445)
T ss_pred CEEEEcCCCCCcchh
Confidence 999999999887753
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.01 E-value=0.023 Score=55.02 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=56.0
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 605 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 605 (658)
-+||||.||.|.+...+.+.|. .++++|+++...+..+.+.... +....+..+|+.+.. .+.||+|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~V 86 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDVI 86 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccEE
Confidence 5799999999999999999885 4789999999988877765432 222223445654321 2479999
Q ss_pred EecCCCCCcc
Q 006172 606 ICQNSVPQIP 615 (658)
Q Consensus 606 IGGpPCQ~FS 615 (658)
+..+|+....
T Consensus 87 i~n~p~~~~~ 96 (179)
T TIGR00537 87 LFNPPYLPLE 96 (179)
T ss_pred EECCCCCCCc
Confidence 9999997665
No 37
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.89 E-value=0.022 Score=63.22 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||++||.||.+..+.+.+-. ..++++|+++......+.+....+.. ..++.+|+.++.. . ...+.||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~-~~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----W-WDGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----h-cccCCCC
Confidence 4578999999999999888876532 35889999999998888876554322 2355677765421 0 0124699
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+-.+||.+..
T Consensus 316 ~Vl~D~Pcs~~G 327 (427)
T PRK10901 316 RILLDAPCSATG 327 (427)
T ss_pred EEEECCCCCccc
Confidence 999999998754
No 38
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.023 Score=57.08 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=57.2
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHH
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFE 593 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie 593 (658)
|..|.+.+-.+-++||||||.|++.+=.-.-|. .-++.||.|..+..+++.|-...+..+ ..++..|.. .-+.
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L~ 107 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RALK 107 (187)
T ss_pred HHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHHH
Confidence 444554233568899999999997544444455 357889999999999998765543112 122333332 1111
Q ss_pred HhhhccCCccEEEecCCCC
Q 006172 594 SLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 594 ~l~~~~g~~DLVIGGpPCQ 612 (658)
. ....+.||+|.==||=.
T Consensus 108 ~-~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 108 Q-LGTREPFDLVFLDPPYA 125 (187)
T ss_pred h-cCCCCcccEEEeCCCCc
Confidence 1 11224599999999976
No 39
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.85 E-value=0.019 Score=63.84 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=58.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||||||.|.+++.|.+.+. .++++|+++.+.+..+.+....+.....++.+|+.+... .+....+.||
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD 369 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD 369 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence 346899999999999999988773 578999999998888776443322223355677654321 1100124699
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+--||+.+..
T Consensus 370 ~Vi~dPPr~g~~ 381 (443)
T PRK13168 370 KVLLDPPRAGAA 381 (443)
T ss_pred EEEECcCCcChH
Confidence 999999987654
No 40
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.83 E-value=0.025 Score=60.33 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+. + ..+.||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence 58999999999999998876422 347899999999998887654432111 22345555321 1 1136999
Q ss_pred EEecCCCCCcc
Q 006172 605 VICQNSVPQIP 615 (658)
Q Consensus 605 VIGGpPCQ~FS 615 (658)
|+.-||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987654
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.82 E-value=0.033 Score=58.65 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=56.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..++.+|+.+. + ..+.||
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence 4689999999999999998764222 47899999999888887654332111 12345565321 1 113699
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-||+-+.+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997654
No 42
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.80 E-value=0.024 Score=66.94 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||||||.||+++.+...|-. -|++||+++.+.+..+.+...++.. ...++.+|+.+. +.. ..+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~ 608 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ 608 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence 3568999999999999999998863 4889999999999988877543221 123445665432 111 1357
Q ss_pred ccEEEecCCCCCc
Q 006172 602 IDFVICQNSVPQI 614 (658)
Q Consensus 602 ~DLVIGGpPCQ~F 614 (658)
||+||-=||+-..
T Consensus 609 fDlIilDPP~f~~ 621 (702)
T PRK11783 609 FDLIFIDPPTFSN 621 (702)
T ss_pred cCEEEECCCCCCC
Confidence 9999999997553
No 43
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.79 E-value=0.017 Score=62.83 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=53.8
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh-----h---
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI-----H--- 597 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~-----~--- 597 (658)
-+|||||||.|++++++.+.. +-+++||+++.+.+..+.+-...+.....++.+|+.++-.. +.... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~ 283 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID 283 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence 469999999999999998764 35789999999999888764332221223456776553211 11000 0
Q ss_pred -ccCCccEEEecCCC
Q 006172 598 -KLGSIDFVICQNSV 611 (658)
Q Consensus 598 -~~g~~DLVIGGpPC 611 (658)
....+|+|+--||=
T Consensus 284 ~~~~~~D~v~lDPPR 298 (362)
T PRK05031 284 LKSYNFSTIFVDPPR 298 (362)
T ss_pred ccCCCCCEEEECCCC
Confidence 01148999999993
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.78 E-value=0.022 Score=63.37 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||++||.||.++.+.+. |-. ..++++|+++...+..+.+....+.....++.+|+.++.. .+ .+.|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence 3468999999999999887654 211 2478999999998888877654432223345677765431 11 1579
Q ss_pred cEEEecCCCCCccc
Q 006172 603 DFVICQNSVPQIPN 616 (658)
Q Consensus 603 DLVIGGpPCQ~FS~ 616 (658)
|+|+-.+||.++..
T Consensus 322 D~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 322 DKILVDAPCSGLGV 335 (444)
T ss_pred CEEEEcCCCCCCee
Confidence 99999999987654
No 45
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.035 Score=64.41 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=71.1
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCccc
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 94 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~ 94 (658)
++.+|+.||||++--.||+==.|..++++-...|...=. |.+++|--+ -.++.++...
T Consensus 574 ~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMd------------Dpd~~~p~v------vp~~~~~a~~---- 631 (763)
T KOG0944|consen 574 VISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMD------------DPDIDDPFV------VPGNSPKADA---- 631 (763)
T ss_pred HHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhcc------------CcccCCcee------cCCCCCcccc----
Confidence 899999999999999999999999999988888876321 222222111 1111111111
Q ss_pred cchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 95 EGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
.+...+.+..++.|||++..+.+|+.... +.|+..+|-|+.+-
T Consensus 632 ~~~~e~~v~si~smGf~~~qa~~aL~~~n--~nveravDWif~h~ 674 (763)
T KOG0944|consen 632 REVDEESVASIVSMGFSRNQAIKALKATN--NNVERAVDWIFSHM 674 (763)
T ss_pred CCCChhHheeeeeecCcHHHHHHHHHhcC--ccHHHHHHHHHhcc
Confidence 01123456889999999999999999944 45899999999874
No 46
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.036 Score=56.03 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|+||=||+|=+.+|..-+|- .-|++||+|+.+..+.+.+-.. ..-...+...||+++. +.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----------~~~d 110 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----------GKFD 110 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----------Cccc
Confidence 456799999999999999999996 4689999999999999986543 1112334566776554 5789
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
.||--||
T Consensus 111 tvimNPP 117 (198)
T COG2263 111 TVIMNPP 117 (198)
T ss_pred eEEECCC
Confidence 9999887
No 47
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.017 Score=64.69 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|+|||||+|++++.|-+... -|.++|+++.+....+.+-..++-....++.+|..++...-. ....+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-----~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-----EGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence 346899999999999999986554 588999999999888876433222223334444444432211 113678
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+==||
T Consensus 365 ~VvvDPP 371 (432)
T COG2265 365 VVVVDPP 371 (432)
T ss_pred EEEECCC
Confidence 8887776
No 48
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=95.52 E-value=0.034 Score=45.53 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=51.7
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 606 (658)
+++|+.||.|++...+...+ ...++++|+++.+....+............++..|+.+... ...+++|+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence 57999999999998888733 24678999999887666532111111122234455554432 1236799999
Q ss_pred ecCCCCCc
Q 006172 607 CQNSVPQI 614 (658)
Q Consensus 607 GGpPCQ~F 614 (658)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99998874
No 49
>PRK14967 putative methyltransferase; Provisional
Probab=95.49 E-value=0.029 Score=56.49 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||++||.|.+.+.+.+.|. ..++++|+++.+.+..+.+....+ ....++.+|+.+. + ..+.||
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD 103 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD 103 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence 346899999999999998888875 357899999998877666543321 1122344555431 1 125799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+..||-..
T Consensus 104 ~Vi~npPy~~ 113 (223)
T PRK14967 104 VVVSNPPYVP 113 (223)
T ss_pred EEEECCCCCC
Confidence 9999987543
No 50
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.45 E-value=0.046 Score=57.29 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=55.5
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
.+|||++||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+- + ....||+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~-----~~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----L-----AGQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----C-----cCCCccE
Confidence 58999999999999999876532 247899999999888887654332211 22344555321 1 0126999
Q ss_pred EEecCCCCCcc
Q 006172 605 VICQNSVPQIP 615 (658)
Q Consensus 605 VIGGpPCQ~FS 615 (658)
|+.-||.-+.+
T Consensus 186 IvsNPPyi~~~ 196 (284)
T TIGR00536 186 IVSNPPYIDEE 196 (284)
T ss_pred EEECCCCCCcc
Confidence 99999998765
No 51
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=95.44 E-value=0.017 Score=42.52 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.3
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 49 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL 49 (658)
.+++++.|||+++.+.+|++..|. |.+.-++.|+
T Consensus 4 ~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 4 KIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 578999999999999999999987 6888888874
No 52
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.43 E-value=0.037 Score=61.57 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||++||.||.+..+.++.-.--.++++|+++...+.++.+....+.....++.+|.+++.... ....+.||
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD 327 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD 327 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence 45789999999999998887652111247899999998888877655443222234556766543110 00125799
Q ss_pred EEEecCCCCCccc
Q 006172 604 FVICQNSVPQIPN 616 (658)
Q Consensus 604 LVIGGpPCQ~FS~ 616 (658)
.|+-.+||.+...
T Consensus 328 ~Vl~DaPCSg~G~ 340 (434)
T PRK14901 328 RILLDAPCSGLGT 340 (434)
T ss_pred EEEEeCCCCcccc
Confidence 9999999988543
No 53
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=95.43 E-value=0.011 Score=48.60 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=27.9
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQD--------NVDLLLETLIE 50 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~--------d~d~iLE~LLt 50 (658)
.++++|..|||+.+.|..|++..|=. ..+.|||.||.
T Consensus 11 ~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk 55 (55)
T PF09288_consen 11 DLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK 55 (55)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence 48899999999999999999998732 35689999984
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=95.41 E-value=0.032 Score=55.99 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=57.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...+....-. ..++++|+++.+.+..+.+....+.....++.+|+.+.- ..+.||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence 4468999999999999988876322 247899999999888877654432222234455654311 125799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-||+...+
T Consensus 157 ~Vi~npPy~~~~ 168 (251)
T TIGR03534 157 LIVSNPPYIPEA 168 (251)
T ss_pred EEEECCCCCchh
Confidence 999999988765
No 55
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.29 E-value=0.022 Score=61.78 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=45.1
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-----h---HHHhhhc
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----K---FESLIHK 598 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~-----~---Ie~l~~~ 598 (658)
++||||||+|.+++.|-..+ +-|++||+++.+.+.-+.+-...+-....++..+..++... . +..+...
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 79999999999999997765 45899999999988777665433222222334444443321 0 1100011
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
...+|+|+==||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 236889987777
No 56
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.28 E-value=0.043 Score=61.24 Aligned_cols=86 Identities=14% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||++||.||.+..+..+ |-. -.++++|+++...+.++.+....+.....+...|.+++.. . ..+.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~--~~~~f 308 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----Y--VQDTF 308 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----h--hhccC
Confidence 3568999999999998877654 111 2478999999999998887654432222244566554431 1 12469
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|.|+-=+||.++...
T Consensus 309 D~Vl~DaPCsg~G~~ 323 (431)
T PRK14903 309 DRILVDAPCTSLGTA 323 (431)
T ss_pred CEEEECCCCCCCccc
Confidence 999999999888653
No 57
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.21 E-value=0.029 Score=41.47 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.1
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 49 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL 49 (658)
.++.++.|||+++.|.+|++..+. |.+.-+++|+
T Consensus 4 ~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLLEMGFSREEARKALRATNN-NVERAVEWLL 37 (38)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHh
Confidence 578999999999999999999998 8888899886
No 58
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.19 E-value=0.084 Score=58.61 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=75.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
|=+||+|||=.||+++..-..|-. -+++||++..+...-+.|..-++..+ ..++.+|+-+. |.....+-..|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence 678999999999999999999973 47899999999998888765443322 22455665433 22222233489
Q ss_pred cEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 603 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 603 DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
||||-=|| .|+.+. + +. .+++..|.+++.....+.
T Consensus 292 DlIilDPP--sF~r~k--------------~---~~-~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 292 DLIILDPP--SFARSK--------------K---QE-FSAQRDYKDLNDLALRLL 326 (393)
T ss_pred cEEEECCc--ccccCc--------------c---cc-hhHHHHHHHHHHHHHHHc
Confidence 99999999 566211 1 12 668888988888776543
No 59
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.07 E-value=0.042 Score=60.57 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+.+|||+|||+|.+++-+. ..|. ..|+++|+++.+.+..+.+...++.....+..+|+..+ +...+.||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence 3689999999999998874 4564 45899999999999998876433222222344454332 11124689
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+-=||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9987765
No 60
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.04 E-value=0.086 Score=56.21 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+||+|||=.||+++..-..|-. -|++||.++.+....+.++.-++.. ...++..|+-+. +.. +++.+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~ 195 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR 195 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence 3569999999999999999999963 4789999999999888887644322 112344555432 111 234578
Q ss_pred ccEEEecCCCCCcc
Q 006172 602 IDFVICQNSVPQIP 615 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS 615 (658)
||+||-=|| .|+
T Consensus 196 fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 196 FDLIILDPP--SFA 207 (286)
T ss_dssp EEEEEE--S--SEE
T ss_pred CCEEEECCC--CCC
Confidence 999999999 665
No 61
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.085 Score=59.81 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=64.0
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCccc
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 94 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~ 94 (658)
++.++++||||.+..+||+--.|..|++.-++.|...-. |.+.+| +-....+-|+. +
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMd------------DPdlnd------P~~~~~~vPKk-----D 617 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMD------------DPDLND------PFVPPPNVPKK-----D 617 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhcc------------CcccCC------CCCCCCCCCcc-----c
Confidence 789999999999999999999999999999999987421 222222 11122222222 2
Q ss_pred cchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172 95 EGLHIEKRASLLMMNFSVNEVDFALDKLGKD 125 (658)
Q Consensus 95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d 125 (658)
.+....++.+|+.|||......+|+-....+
T Consensus 618 keVdE~~~~Slle~Gln~n~~Rkal~~~n~d 648 (749)
T COG5207 618 KEVDESKARSLLENGLNPNLCRKALMDMNTD 648 (749)
T ss_pred ccccHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence 3334567899999999999999998875444
No 62
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=94.94 E-value=0.03 Score=41.69 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=29.2
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETL 48 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~L 48 (658)
..+.+++.|||+++.+.+|++..|. |.+.=+++|
T Consensus 4 ~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 3578999999999999999999988 888888776
No 63
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=94.87 E-value=0.042 Score=59.70 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=54.2
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hhc---
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IHK--- 598 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~--l--~~~--- 598 (658)
-+|||||||.|.+++.|.+.. +-+++||+++.+.+..+.+....+-....++.+|+.++-...... + ...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999988765 258899999999999988765432222234566765543211000 0 000
Q ss_pred -cCCccEEEecCCC
Q 006172 599 -LGSIDFVICQNSV 611 (658)
Q Consensus 599 -~g~~DLVIGGpPC 611 (658)
...+|+|+=-||=
T Consensus 276 ~~~~~d~v~lDPPR 289 (353)
T TIGR02143 276 KSYNCSTIFVDPPR 289 (353)
T ss_pred ccCCCCEEEECCCC
Confidence 0137999999993
No 64
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=94.72 E-value=0.018 Score=60.14 Aligned_cols=51 Identities=16% Similarity=0.372 Sum_probs=46.1
Q ss_pred ccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172 468 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 518 (658)
Q Consensus 468 ~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL 518 (658)
+|+=++|.|+-|++|||.++-=-.+.+...||++||||.+|.+++++.+.|
T Consensus 286 ~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL 336 (338)
T KOG0919|consen 286 RLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL 336 (338)
T ss_pred HhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence 677889999999999999987667888999999999999999999987765
No 65
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.68 E-value=0.036 Score=62.95 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChHHHHHHHcC--------CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aG--------i~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
...+|+|..||.|++-+++-... +. ..+.++|||+.+....+..+...+..+..+..+|.-.-+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~---~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN---I 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc---c
Confidence 45789999999999988875422 22 357899999999887776554332111112222211100000 0
Q ss_pred hhccCCccEEEecCCCCCcc
Q 006172 596 IHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPCQ~FS 615 (658)
....+.||+|||=||=-...
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01236899999999977553
No 66
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=94.43 E-value=1 Score=43.17 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=81.7
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 89 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e 89 (658)
.-|+..+...||+++.|+.||++. |=-|.....+..+...... +
T Consensus 29 ~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~~--~------------------------------- 75 (157)
T PRK00117 29 AELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRARK--G------------------------------- 75 (157)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--C-------------------------------
Confidence 338899999999999999999876 4335557777766655211 0
Q ss_pred CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172 90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 169 (658)
Q Consensus 90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~ 169 (658)
.+ .......|..-||+.+.|..||+++.++ . .+++..++.-...... . .+. .
T Consensus 76 -----~g-~~~I~~~L~~kGi~~~~I~~~l~~~~~d-~-~e~a~~~~~k~~~~~~----~---------------~~~-~ 127 (157)
T PRK00117 76 -----YG-PRRIRQELRQKGVDREIIEEALAELDID-W-EELARELARKKFRRPL----P---------------DDA-K 127 (157)
T ss_pred -----ch-HHHHHHHHHHcCCCHHHHHHHHHHcCcc-H-HHHHHHHHHHHcCCCC----C---------------CCH-H
Confidence 00 3456688999999999999999998732 2 2333333322222110 0 011 1
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 006172 170 TMEITL-QLLEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~d 197 (658)
...|+. +|..=||+-+.+..||+....+
T Consensus 128 ~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 128 EKAKLVRFLARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 235664 9999999999999999876554
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.30 E-value=0.13 Score=51.30 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=40.0
Q ss_pred hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
++..|......+.+|||+.||.|.+...+...+. .++++|+++......+....
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence 3444442122467899999999999999988875 46899999998877766543
No 68
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.28 E-value=0.084 Score=54.68 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+-||.|.++..+.+.+. -++++|+|+.....++..... .....++.+|+.++.- ..+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d 93 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN 93 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence 456899999999999999999875 378999999988887765432 1223356778776542 2468
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+|-+|=+
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 999987744
No 69
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.26 E-value=0.14 Score=51.13 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|.+...+.+. |-. .-++++|+++...+..+......+.....++.+|+.++.. ..+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence 4578999999999998888654 322 2478999999887776654332222222344566655431 12579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+.+...+.+
T Consensus 116 D~V~~~~~l~~~ 127 (231)
T TIGR02752 116 DYVTIGFGLRNV 127 (231)
T ss_pred cEEEEecccccC
Confidence 999987665544
No 70
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.91 E-value=0.13 Score=53.64 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+=||.|.++..|.+.|- -++++|+|+.....++..+.. +...++.+|+.++....+ ..+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~--------~~~ 107 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSEL--------QPL 107 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHc--------Ccc
Confidence 456899999999999999998874 478999999998888764421 234467888887754321 158
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|||-+|
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 8999888
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=93.85 E-value=0.19 Score=48.02 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-++||+.||.|.+...+.+.|. .++++|+++.+....+.+....+... ..+...|..+- + . ...
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~---~--~~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----F---R--GDK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----c---c--ccC
Confidence 446799999999999999988875 36789999988777666543222111 22334554321 1 1 126
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
+|+|+..+|+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999998754
No 72
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.78 E-value=0.12 Score=57.11 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=48.8
Q ss_pred CCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+++|||+|||+|-..+-+-.- |. +.|+++|+|+.|...++.+....+.....+..+|...+-. .....|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence 489999999999776655443 65 4689999999999999987643321111233344332211 112458
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|.==||
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 88866554
No 73
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.72 E-value=0.18 Score=56.06 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
.+-+|||++||.||.+.-+.++ + . -.++++|+++...+..+.+....+.. ..+ ..+|...+.. ....+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~------~~~~~ 308 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ------WAENE 308 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc------ccccc
Confidence 3578999999999999887764 3 2 24789999999988888776543221 111 2334332221 01225
Q ss_pred CccEEEecCCCCCcccC
Q 006172 601 SIDFVICQNSVPQIPNS 617 (658)
Q Consensus 601 ~~DLVIGGpPCQ~FS~a 617 (658)
.||.|+-.+||.++..-
T Consensus 309 ~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 309 QFDRILLDAPCSATGVI 325 (426)
T ss_pred ccCEEEEcCCCCCCccc
Confidence 79999999999998754
No 74
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.70 E-value=0.12 Score=53.11 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|.++..+.+.+-+ ++++|+|+.....++..+.. .....++.+|+.++.... +...+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~ 96 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL 96 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence 4578999999999999999999843 78999999998888765532 122335677887665321 11124
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+|..|
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888887
No 75
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.44 E-value=0.25 Score=43.21 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=52.0
Q ss_pred CCcccccCCCCChHHHHHHH--cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006172 525 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~--aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+-+||||=||.|.+.+.+.+ .|.+ ++++|+++...+..+....... .....++.+|+ .... ...++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence 45799999999999999999 7764 7899999999988887662221 12233456777 2211 12357
Q ss_pred ccEEEecC
Q 006172 602 IDFVICQN 609 (658)
Q Consensus 602 ~DLVIGGp 609 (658)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99998655
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.38 E-value=0.18 Score=54.83 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=49.9
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 606 (658)
+||||.||.|.+...+.+.+-.. .+.++|+++.+....+.+....+-.+ .++..|+.+ .+ .+.||+|+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~----~~------~~~fDlIv 266 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLEG-EVFASNVFS----DI------KGRFDMII 266 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCC-EEEEccccc----cc------CCCccEEE
Confidence 79999999999998888765322 37889999998887776654432212 233344421 11 25799999
Q ss_pred ecCCC
Q 006172 607 CQNSV 611 (658)
Q Consensus 607 GGpPC 611 (658)
..||=
T Consensus 267 sNPPF 271 (342)
T PRK09489 267 SNPPF 271 (342)
T ss_pred ECCCc
Confidence 98873
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=93.34 E-value=0.28 Score=49.12 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|.++..|.+..-+--.++++|+++......+.+....+.....++.+|..+.-. ....||
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence 467899999999999988876532111378999999988777766554332223344566543211 124799
Q ss_pred EEEecCCCCCc
Q 006172 604 FVICQNSVPQI 614 (658)
Q Consensus 604 LVIGGpPCQ~F 614 (658)
+|+-.+++...
T Consensus 149 ~Ii~~~~~~~~ 159 (215)
T TIGR00080 149 RIYVTAAGPKI 159 (215)
T ss_pred EEEEcCCcccc
Confidence 99877766544
No 78
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.44 Score=54.33 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchhhhHHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLL 178 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m~k~~~L~ 178 (658)
-..+.+|++||||++.+.+|+---|..++ +.-.+.|+.+-.-- | .+|-=.......-.+---+..|..+|+
T Consensus 559 qs~I~qL~~mGfp~~~~~rAL~~tgNqDa-EsAMNWLFqHMdDP-------d-lndP~~~~~~vPKkDkeVdE~~~~Sll 629 (749)
T COG5207 559 QSLIRQLVDMGFPEEDAARALGITGNQDA-ESAMNWLFQHMDDP-------D-LNDPFVPPPNVPKKDKEVDESKARSLL 629 (749)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhccCcch-HHHHHHHHhhccCc-------c-cCCCCCCCCCCCcccccccHHHHHHHH
Confidence 45789999999999999999999999877 77888887662111 1 000000000000000000124667999
Q ss_pred hcCCCHHHHHHHHH
Q 006172 179 EMGFSENQVSLAIE 192 (658)
Q Consensus 179 ~MGf~e~Eas~AI~ 192 (658)
+|||....++-|+=
T Consensus 630 e~Gln~n~~Rkal~ 643 (749)
T COG5207 630 ENGLNPNLCRKALM 643 (749)
T ss_pred HcCCCHHHHHHHHH
Confidence 99999999998764
No 79
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.09 E-value=0.15 Score=54.00 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=56.6
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 606 (658)
+||||.||.|-+.+++...+-. -.|+++||++.|.++-+.|...++- .++..+.. ++-. .-.+.||+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence 7999999999999999998854 3678999999999888877654421 22333333 2211 1125899999
Q ss_pred ecCCCCCcc
Q 006172 607 CQNSVPQIP 615 (658)
Q Consensus 607 GGpPCQ~FS 615 (658)
.-||==+-.
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999977766
No 80
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=93.05 E-value=0.45 Score=41.99 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||.||.|.+..-+-+..-. ..++++|+++.+....+.+....+.....+..+|+...... ..+.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence 3468999999999999888765211 34789999999888877654433222222334554422110 124789
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|+-
T Consensus 91 ~v~~ 94 (124)
T TIGR02469 91 RVFI 94 (124)
T ss_pred EEEE
Confidence 8875
No 81
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=93.05 E-value=0.21 Score=49.29 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=50.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+|||+-||.|-+++.+..++-. ..++++|+++......+.+....+.....++.+|+.++.. .+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence 678999999999888777655522 2378999999877777766554332223355677765421 257999
Q ss_pred EEecC
Q 006172 605 VICQN 609 (658)
Q Consensus 605 VIGGp 609 (658)
|+...
T Consensus 113 I~s~~ 117 (181)
T TIGR00138 113 ITSRA 117 (181)
T ss_pred EEehh
Confidence 98653
No 82
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.35 Score=56.52 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCC---CCCCCCCCCCCCCCCcccccchhhhHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKET---DDAPHDNDGTNEDKSDETLYGTMEITL 175 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~---~D~~~~~d~~~ed~~~e~~~~~m~k~~ 175 (658)
...+.+|+.||||++-..+|+=--|...+ +.-...|+.+-.--..++-- +-....++. .-+ -+-.-
T Consensus 572 ~s~i~qL~~MGFp~eac~rAly~tgN~~a-EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~----~~~------e~~v~ 640 (763)
T KOG0944|consen 572 RSVISQLVEMGFPEEACRRALYYTGNSGA-EAASNWLMEHMDDPDIDDPFVVPGNSPKADAR----EVD------EESVA 640 (763)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhcCccH-HHHHHHHHHhccCcccCCceecCCCCCccccC----CCC------hhHhe
Confidence 34679999999999999999999988876 55555555542111100000 000000000 000 12233
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006172 176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 210 (658)
Q Consensus 176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~Aa 210 (658)
+++.|||+..+|..|..- .+..|+.+||-|++-
T Consensus 641 si~smGf~~~qa~~aL~~--~n~nveravDWif~h 673 (763)
T KOG0944|consen 641 SIVSMGFSRNQAIKALKA--TNNNVERAVDWIFSH 673 (763)
T ss_pred eeeeecCcHHHHHHHHHh--cCccHHHHHHHHHhc
Confidence 889999999999988765 356799999999864
No 83
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=92.87 E-value=0.1 Score=54.82 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=54.5
Q ss_pred HhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHc------CCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 006172 500 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG 573 (658)
Q Consensus 500 k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a------Gi~~k~vvavEid~~a~~t~k~~~~~~n 573 (658)
|.+|..|....++.++.-+-... .+-+|+|.+||.|||-+++.+. -+.-..++++|+++.+....+.+..-++
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 44566666666666654444332 3567999999999998887651 0111357899999998876554322221
Q ss_pred CCCC--ccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172 574 QTGE--LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 574 ~~g~--l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
-... .+..+|.- ..... .....+|+|+|-||=-..
T Consensus 102 ~~~~~~~i~~~d~l--~~~~~----~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDSL--ENDKF----IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-TT--TSHSC----TST--EEEEEEE--CTCE
T ss_pred cccccccccccccc--ccccc----ccccccccccCCCCcccc
Confidence 1011 12233321 11000 013579999999986655
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=92.78 E-value=0.22 Score=52.44 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
.+.+|||+.||.|.+++++.++|. ..++++|+++.+....+.+...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence 457899999999999999999986 3588999999998887776543
No 85
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.76 E-value=0.17 Score=49.73 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+++||=||||-++.|+...+- +.++++|||+.|..++.+|-.... -...+...||.++-. ..+-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence 578899999999999999999986 468999999999999877543321 011133455544432 236789
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
.++=-||
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 8887776
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=92.48 E-value=0.24 Score=55.61 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=52.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.++|||.||.|.+.+.+.+..-. ..+.++|+++.+.+..+.+....+ ....++.+|+.+.. + ...+.||+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL 322 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI 322 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence 458999999999999887754322 247899999999998887764432 12224456654321 0 01246999
Q ss_pred EEecCCC
Q 006172 605 VICQNSV 611 (658)
Q Consensus 605 VIGGpPC 611 (658)
|+.-||=
T Consensus 323 IVSNPPY 329 (423)
T PRK14966 323 IVSNPPY 329 (423)
T ss_pred EEECCCC
Confidence 9988873
No 87
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.38 E-value=0.23 Score=52.91 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=64.2
Q ss_pred Hhhhhhh--cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCC
Q 006172 500 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG 576 (658)
Q Consensus 500 k~Lgnsf--qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g 576 (658)
|.||-.| +..++..++..+. ...+-+|||+-||.|.++..|...+- -++++|+|+.....++......+ ...
T Consensus 12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 4456666 3334444444332 22456899999999999999888774 37899999999988887654322 122
Q ss_pred CccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172 577 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 577 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
..++.+|+.++. +..+|+|++-.|=+
T Consensus 87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 87 LEVIEGDALKTE----------FPYFDVCVANVPYQ 112 (294)
T ss_pred EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence 335677776543 13578999877654
No 88
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=92.30 E-value=0.18 Score=41.60 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDA 126 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~ 126 (658)
-+.+..|+.|||+.+-|..|+.+.|-+.
T Consensus 10 ~~lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 10 KDLVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 4578999999999999999999998755
No 89
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.15 E-value=0.24 Score=50.82 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=53.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||+=||.|.++..|.+.|.+ ++++|+++...+..+......+.. ...++.+|+.++.. . ..+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence 45679999999999999999999864 678999999888777654332211 11244566665532 1 1257
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+....
T Consensus 113 fD~V~~~~v 121 (255)
T PRK11036 113 VDLILFHAV 121 (255)
T ss_pred CCEEEehhH
Confidence 999996554
No 90
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.09 E-value=0.4 Score=51.90 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+|||+-||.|.+...|.+.|.+ |++||+++...+..+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence 4578999999999999999998864 689999999888777543
No 91
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=92.00 E-value=0.32 Score=38.22 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=29.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh--CCCCchHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVD 133 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~--G~d~~i~~L~d 133 (658)
..+.+..|+.+||++.+|.+|+.+. +++.++++++-
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik 40 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 4678899999999999999999998 78888777664
No 92
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=91.80 E-value=0.41 Score=47.50 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
.+.+|||+-||.|.+...|.+.|.. +.++|+++......+..+..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence 4578999999999999999988863 78999999988877766543
No 93
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.59 E-value=0.61 Score=46.29 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+|||+=||.|..++-|.+.|++ |.++|+++.+....+..-...+.........|+.++.. .+.||+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~fD~ 98 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---------DGEYDF 98 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---------CCCcCE
Confidence 468999999999999999999974 68899999987776654333221112223345443321 135777
Q ss_pred EEecC
Q 006172 605 VICQN 609 (658)
Q Consensus 605 VIGGp 609 (658)
|+...
T Consensus 99 I~~~~ 103 (197)
T PRK11207 99 ILSTV 103 (197)
T ss_pred EEEec
Confidence 77544
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.46 E-value=0.32 Score=50.05 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=40.7
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
|..+...+.+|||+-||.|.+.+.+.+.|.. .++++|+|+.+.+..+.+..
T Consensus 113 l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 113 LEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred HHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 3333346689999999999999999999864 37899999999887776543
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=91.46 E-value=0.53 Score=46.84 Aligned_cols=80 Identities=23% Similarity=0.204 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.++..|.+++- -++++|+++......+.++...+.....+..+|..+. + ...+.||
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG----W----PAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC----C----CcCCCcC
Confidence 458999999999999887777753 3789999999888777776544322222344554321 1 1125799
Q ss_pred EEEecCCCCCc
Q 006172 604 FVICQNSVPQI 614 (658)
Q Consensus 604 LVIGGpPCQ~F 614 (658)
+|+-..+|..+
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 98887776654
No 96
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=91.33 E-value=0.63 Score=45.38 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
.+.+|||+.||.|.+.+.+.+.+-. .-++++|+++.+.+..+.+..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 4568999999999999988876532 247899999998888776544
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=91.32 E-value=0.36 Score=50.70 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=53.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+-++|||=||+|.+.+.+..-==+ .-+++||+++.+..--+++-...+. ....++..||.++.... ....||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------~~~~fD 117 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------VFASFD 117 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc------cccccC
Confidence 678999999999999988765212 2467899999887655553322111 11224566776554321 235799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+||.-||=-.
T Consensus 118 ~Ii~NPPyf~ 127 (248)
T COG4123 118 LIICNPPYFK 127 (248)
T ss_pred EEEeCCCCCC
Confidence 9999998544
No 98
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.12 E-value=0.18 Score=52.34 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=62.4
Q ss_pred cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcccccccc
Q 006172 507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQ 585 (658)
Q Consensus 507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~ 585 (658)
++.-++-|+.--+.-+.+.-.+||-|||+||-..=|-.-|-. |+++|||+.....-+++-+-.+-+ -..++.+|+-
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l 153 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL 153 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence 444455555444443446677999999999999999988863 789999999876655432211111 1113456664
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCCccc
Q 006172 586 ALTTKKFESLIHKLGSIDFVICQNSVPQIPN 616 (658)
Q Consensus 586 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 616 (658)
++-. .+ ++.+ .-+|+|.+.||=-+-|.
T Consensus 154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSY 180 (263)
T ss_pred HHHH-HH-hhhh--heeeeeecCCCCCCcch
Confidence 3321 11 1111 23789988888766664
No 99
>PLN02244 tocopherol O-methyltransferase
Probab=90.87 E-value=0.68 Score=50.00 Aligned_cols=75 Identities=23% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
..+.+|||+-||.|++...|.+. |.+ ++++|+++...+..+......+. ....++.+|+.++.- ..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~---v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGAN---VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCC
Confidence 34578999999999999888774 653 67899999876665543322211 112345667765431 125
Q ss_pred CccEEEec
Q 006172 601 SIDFVICQ 608 (658)
Q Consensus 601 ~~DLVIGG 608 (658)
.||+|+..
T Consensus 186 ~FD~V~s~ 193 (340)
T PLN02244 186 QFDLVWSM 193 (340)
T ss_pred CccEEEEC
Confidence 79999853
No 100
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=90.74 E-value=0.83 Score=45.63 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=52.6
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
++++.+.+|||+=||.|.+++.+.++.-. ..++++|+++......+.+....+.....++.+|+.++.. .
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~ 110 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E 110 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence 34445789999999999988877653322 2478999999887777766554432223345566655432 2
Q ss_pred CCccEEEec
Q 006172 600 GSIDFVICQ 608 (658)
Q Consensus 600 g~~DLVIGG 608 (658)
+.||+|+..
T Consensus 111 ~~fDlV~~~ 119 (187)
T PRK00107 111 EKFDVVTSR 119 (187)
T ss_pred CCccEEEEc
Confidence 479999963
No 101
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.53 E-value=0.23 Score=53.50 Aligned_cols=57 Identities=25% Similarity=0.249 Sum_probs=44.1
Q ss_pred hhhhcccccccCCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlsl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
+.--++|++ ++..+-.++|||||||=+++ -+-.+|- +.|+|||++|.+...|++.-.
T Consensus 182 ~~EK~Rv~~-~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~ 239 (351)
T KOG1227|consen 182 IKEKKRVLN-TSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE 239 (351)
T ss_pred HHHHHHhhh-cccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence 333344443 34456779999999999999 6779998 469999999999999998643
No 102
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=90.47 E-value=0.73 Score=45.58 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=47.1
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||+.||.|.+++.+-+ +|-. .-++++|+++...+..+.+....+ .....+..+|..++ +. ...+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~---~~~~~ 111 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LF---TINEK 111 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hh---hcCCC
Confidence 456899999999999887754 3422 247899999998877665543221 11111223443321 11 11257
Q ss_pred ccEEEecC
Q 006172 602 IDFVICQN 609 (658)
Q Consensus 602 ~DLVIGGp 609 (658)
+|+|+-|.
T Consensus 112 ~D~V~~~~ 119 (198)
T PRK00377 112 FDRIFIGG 119 (198)
T ss_pred CCEEEECC
Confidence 99988654
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.45 E-value=0.59 Score=53.41 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=51.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+.+|||+.||.|.+.+++...- +-..++++|+++.+.+..+.+....+... ..++.+|+.+ .+ ..+.||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence 4689999999999998876431 11247899999999988887654332111 1123344321 11 124799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+..||=-+.+
T Consensus 209 lIvsNPPYi~~~ 220 (506)
T PRK01544 209 FIVSNPPYISHS 220 (506)
T ss_pred EEEECCCCCCch
Confidence 999999855443
No 104
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=90.39 E-value=0.94 Score=45.23 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=53.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI-~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+...+.+.. +-..+++||+++...+..+.+....+.....++.+|+ ..+. .. ...+.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCcccc
Confidence 45789999999999999886653 2235889999999888877765433222223455666 3221 11 112569
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+--+|.+
T Consensus 113 D~V~~~~~~p 122 (202)
T PRK00121 113 DRIYLNFPDP 122 (202)
T ss_pred ceEEEECCCC
Confidence 9998766543
No 105
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.24 E-value=0.45 Score=52.69 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=50.5
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~----l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
-+||||.||.|-+.+.+.+.+-. .-+.++|+++.+...-+.++... .... .+...|+.+ .+ ..+.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~ 298 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR 298 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence 37999999999999998877522 24688999999988888777533 2111 122333311 11 1246
Q ss_pred ccEEEecCCC
Q 006172 602 IDFVICQNSV 611 (658)
Q Consensus 602 ~DLVIGGpPC 611 (658)
||+|+.-||.
T Consensus 299 fDlIlsNPPf 308 (378)
T PRK15001 299 FNAVLCNPPF 308 (378)
T ss_pred EEEEEECcCc
Confidence 9999998885
No 106
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=90.21 E-value=0.59 Score=46.08 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCcccccCCCCChHHH--HHHHcCCc------eeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 006172 524 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES 594 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlsl--GL~~aGi~------~k~vvavEid~~a~~t~k~~~~~~n~~g~-l~~~~DI~~Lt~~~Ie~ 594 (658)
.+-.|||-|||.|++-+ ++....+. ...++++||++.+.+.-+.+....+.... .+...|.+++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------ 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence 45689999999999864 44444432 00167999999998877776654432111 12334555554
Q ss_pred hhhccCCccEEEecCC
Q 006172 595 LIHKLGSIDFVICQNS 610 (658)
Q Consensus 595 l~~~~g~~DLVIGGpP 610 (658)
...+.+|+||.=||
T Consensus 102 --~~~~~~d~IvtnPP 115 (179)
T PF01170_consen 102 --LPDGSVDAIVTNPP 115 (179)
T ss_dssp --GTTSBSCEEEEE--
T ss_pred --cccCCCCEEEECcc
Confidence 12257999999988
No 107
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=90.19 E-value=0.62 Score=50.29 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERR 185 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHH
Confidence 4679999999999999999999864 68899999987766554
No 108
>PRK14135 recX recombination regulator RecX; Provisional
Probab=89.89 E-value=5.3 Score=41.48 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=77.9
Q ss_pred chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
...+...|...||+.+.|..||++.-+++.-..+..+... .+..... ..
T Consensus 125 ~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k-~~~~~~~-----------------------------~~- 173 (263)
T PRK14135 125 PRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEK-LLKKYQK-----------------------------LP- 173 (263)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHH-HHHHhcC-----------------------------CC-
Confidence 3458999999999999999999988443221111111111 0100000 00
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH--hhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA--QISENFEKETDDAPHDNDGTNEDKSDETLYG 169 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~--q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~ 169 (658)
......+....|..-||+.+.|..||+++..+...++-.+.+... +...... .. + . ..
T Consensus 174 --~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~-~~-~---------------~-~k 233 (263)
T PRK14135 174 --FKALKQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYS-KY-D---------------G-YE 233 (263)
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHh-cC-C---------------H-HH
Confidence 001134567889999999999999999987543222222222211 1111111 00 0 0 12
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCC
Q 006172 170 TMEITL-QLLEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~d 197 (658)
...|+. +|..=||+-+.+..++.....+
T Consensus 234 ~k~K~~~~L~rrGF~~~~I~~~l~~~~~~ 262 (263)
T PRK14135 234 LKQKLKQALYRKGFSYDDIDSFLREYGIE 262 (263)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHhccC
Confidence 235665 9999999999999999887543
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.83 E-value=0.61 Score=45.90 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
.+-+|||++||.|.+...+.+++-. ..++++|+++...+..+.+...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence 3468999999999999888765322 3578999999998888876543
No 110
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.76 E-value=0.61 Score=49.96 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=53.1
Q ss_pred CcccccCCCCChHHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 526 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
..++|++||.|.+++++ |.++ + -.+.|+|.++.|.+....|-....-.|..-++.-|. +.+.........+..|+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--e~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--ESDASDEHPLLEGKIDL 225 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--ccccccccccccCceeE
Confidence 36899999999999997 4555 4 467899999999987766544332223222221111 22222222234589999
Q ss_pred EEecCCCC
Q 006172 605 VICQNSVP 612 (658)
Q Consensus 605 VIGGpPCQ 612 (658)
+++-||--
T Consensus 226 lvsNPPYI 233 (328)
T KOG2904|consen 226 LVSNPPYI 233 (328)
T ss_pred EecCCCcc
Confidence 99999853
No 111
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=89.69 E-value=0.72 Score=48.33 Aligned_cols=72 Identities=33% Similarity=0.356 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+++|||.=||.|=++.-+.++|. .|.++|+++.+..+-+.++..+. .. .|=...+.+ .+....+.||
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence 568999999999999999999996 47899999999999888776442 11 122223333 3333337899
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|++
T Consensus 127 vV~c 130 (243)
T COG2227 127 VVTC 130 (243)
T ss_pred EEEE
Confidence 9974
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=0.66 Score=49.98 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=45.3
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
|.-|..+-..+.+|||+=||.|=+++|..++|- +-++++||||.|.++-+.|-.
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence 455666666889999999999999999999997 458999999999888776543
No 113
>PRK14135 recX recombination regulator RecX; Provisional
Probab=89.29 E-value=6.2 Score=40.97 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=81.3
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 89 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e 89 (658)
.-|+..+..-||+++.|..||+.. |-=|.....+..+....-.. .
T Consensus 75 ~el~~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~-~------------------------------- 122 (263)
T PRK14135 75 KEVRDYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTG-D------------------------------- 122 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-c-------------------------------
Confidence 448888888899999999999865 43355666665555332110 0
Q ss_pred CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172 90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 169 (658)
Q Consensus 90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~ 169 (658)
- ...+....|...||+.+.|..||+++-++.-++.+.. +.. ........ . +...
T Consensus 123 -----~-g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~-~~~-k~~~~~~~-~-----------------~~~~ 176 (263)
T PRK14135 123 -----K-GPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQK-LAE-KLLKKYQK-L-----------------PFKA 176 (263)
T ss_pred -----c-chHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHH-HHH-HHHHHhcC-C-----------------CHHH
Confidence 0 0345678899999999999999999855433322111 111 11111000 0 0011
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 006172 170 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI 200 (658)
Q Consensus 170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~da~i 200 (658)
.-.|+. +|..-||+.+.+..|++.+..+...
T Consensus 177 ~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~ 208 (263)
T PRK14135 177 LKQKIIQSLLTKGFSYEVIKAALEELDLEQDE 208 (263)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHcccCCCh
Confidence 224554 8999999999999999999765433
No 114
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.00 E-value=0.81 Score=46.49 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 565 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~ 565 (658)
+.+-+||++.||.|--.+-|.+.|++ |+++|+++.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF 72 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence 45679999999999999999999996 78999999998754
No 115
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=88.58 E-value=0.57 Score=48.69 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||++-+|.|.++..|...| +-++++|+|+.....++..+. ......++.+|+.+++..... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~ 99 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL 99 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence 56889999999999999999999 457899999999988887543 122334678999888764321 23556
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+|--|
T Consensus 100 ~vv~NlP 106 (262)
T PF00398_consen 100 LVVGNLP 106 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 7888776
No 116
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=88.38 E-value=1.8 Score=43.42 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+|||+.||.|.+...+.+.|.+ ++++|+++......+...
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHH
Confidence 4678999999999999999888853 678999998876665544
No 117
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=88.34 E-value=1.4 Score=43.59 Aligned_cols=83 Identities=19% Similarity=0.117 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
...++||+=||.|.+...+.+..-. ..++++|+++......++.....+.....++.+|+.++....+ ..+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-----~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-----PDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-----CCCcee
Confidence 3457999999999999888876422 3578999999876665554443322222345666655421111 124699
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
.|+--+|.-
T Consensus 90 ~v~~~~pdp 98 (194)
T TIGR00091 90 KVFLNFPDP 98 (194)
T ss_pred EEEEECCCc
Confidence 998877643
No 118
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.19 E-value=1.7 Score=45.31 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=47.5
Q ss_pred hhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEE
Q 006172 475 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI 553 (658)
Q Consensus 475 ~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vv 553 (658)
.=.|+|||.-.-|+. ++..+... ++.+. .+.+.+|||+=||.|+....+.+ .|. -++
T Consensus 22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~ 79 (263)
T PTZ00098 22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH 79 (263)
T ss_pred hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence 345888887666664 55554433 11121 23557899999999998877744 354 378
Q ss_pred EeeCCHHHHHHHHHH
Q 006172 554 SIETSETNRRILKRW 568 (658)
Q Consensus 554 avEid~~a~~t~k~~ 568 (658)
++|+++......+..
T Consensus 80 giD~s~~~~~~a~~~ 94 (263)
T PTZ00098 80 GVDICEKMVNIAKLR 94 (263)
T ss_pred EEECCHHHHHHHHHH
Confidence 999999876666553
No 119
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.47 E-value=1.4 Score=49.88 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=60.7
Q ss_pred hhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCcccc
Q 006172 16 RSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDE 95 (658)
Q Consensus 16 ~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~~ 95 (658)
+..+++|||..+++.-|++.+- +|...-|+.|-+-+. +=+.+.+.+ ....
T Consensus 379 ~~rL~~mGyer~la~eaL~r~~-Ndi~~aldllq~esd------------------el~~n~~~~------p~~v----- 428 (568)
T KOG2561|consen 379 LERLVSMGYERELAAEALRRNE-NDIQKALDLLQDESD------------------ELESNKPKR------PEQV----- 428 (568)
T ss_pred HHHHHhcchHhHHHHHHHHhcc-CcHHHHHHhcCCcch------------------hhhccCCCC------Cccc-----
Confidence 3589999999999999999864 477777776533111 112222221 1111
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
-..++..|+.|||.+-.+..|++-.|.. .+....+|.++
T Consensus 429 --d~~~la~Lv~mGF~e~~A~~ALe~~gnn--~~~a~~~L~~s 467 (568)
T KOG2561|consen 429 --DGISLAELVSMGFEEGKARSALEAGGNN--EDTAQRLLSAS 467 (568)
T ss_pred --chhhHHHHHHhccccchHHHHHHhcCCc--HHHHHHHHHHh
Confidence 1246889999999999999999987764 46777777655
No 120
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=87.17 E-value=1.2 Score=46.20 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~-t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.++||+-||.||++..+.+.|. +.+++||+++.-.. .++. +..-..+...||+.++.+++. ..+..+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF 144 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence 567899999999999999999985 46899999984221 2221 111112345577766655442 123456
Q ss_pred cEEEec
Q 006172 603 DFVICQ 608 (658)
Q Consensus 603 DLVIGG 608 (658)
|+++-+
T Consensus 145 DvsfiS 150 (228)
T TIGR00478 145 DVSFIS 150 (228)
T ss_pred eEEEee
Confidence 766543
No 121
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=87.08 E-value=1.1 Score=48.24 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=41.5
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
|..+...+-+|||+=||.|=++++..++|-. -|+++|||+.|.++-+.|-.
T Consensus 155 l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~ 205 (295)
T PF06325_consen 155 LEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAE 205 (295)
T ss_dssp HHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHH
T ss_pred HHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHH
Confidence 4444445679999999999999999999985 58999999999988887654
No 122
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=87.03 E-value=1.3 Score=38.70 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=47.6
Q ss_pred ccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 528 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 528 vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
||||=||.|-....|.+. |.+ .-+.++|+++.+....+++....+ ....++..|++++.. ..+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~-~~~~~~~~D~~~l~~--------~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDG-PKVRFVQADARDLPF--------SDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTT-TTSEEEESCTTCHHH--------HSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcC-CceEEEECCHhHCcc--------cCCCeeE
Confidence 689999999999999876 432 357899999999888777654322 234467888877532 2358999
Q ss_pred EEe
Q 006172 605 VIC 607 (658)
Q Consensus 605 VIG 607 (658)
|+.
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 123
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=86.99 E-value=1.8 Score=42.89 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+|||+=||.|-.++-|.+.|.+ |.++|+++.+.+..+......+- .......|+.... + .+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~---~------~~~fD~ 97 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAA---L------NEDYDF 97 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhcc---c------cCCCCE
Confidence 368999999999999999888974 68899999988877654432221 1112233433221 1 146899
Q ss_pred EEecCCCC
Q 006172 605 VICQNSVP 612 (658)
Q Consensus 605 VIGGpPCQ 612 (658)
|+...+.-
T Consensus 98 I~~~~~~~ 105 (195)
T TIGR00477 98 IFSTVVFM 105 (195)
T ss_pred EEEecccc
Confidence 98766544
No 124
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=86.87 E-value=1.4 Score=44.50 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=46.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g~~ 602 (658)
.+-+||||=||.|+++..+.+..-.-..|++||+++.. +.++..++.+||.+... ..|.... ..+.+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCCC
Confidence 45689999999999987665542122358999999831 12344567889886542 2222111 23679
Q ss_pred cEEEec
Q 006172 603 DFVICQ 608 (658)
Q Consensus 603 DLVIGG 608 (658)
|+|+..
T Consensus 119 D~V~S~ 124 (209)
T PRK11188 119 QVVMSD 124 (209)
T ss_pred CEEecC
Confidence 999974
No 125
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=86.85 E-value=1.5 Score=49.96 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.||=+..+..+ +-+ -.++|+|+++.-.++++.+....+.....+...|.+++.. . ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence 4578999999999999887653 111 1488999999988888877655432222233445443321 1 12469
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|.|+-=.||.+...-
T Consensus 185 D~ILvDaPCSG~G~~ 199 (470)
T PRK11933 185 DAILLDAPCSGEGTV 199 (470)
T ss_pred CeEEEcCCCCCCccc
Confidence 999999999987653
No 126
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.82 E-value=2.3 Score=42.43 Aligned_cols=82 Identities=20% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+.||.|..+.-+.++ +-. ..++++|+++......+.+....+... ..++.+|..+.-. ..+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~-g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~ 142 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERR-GKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP 142 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence 4578999999999998776653 211 247899999987766665543322111 1234566653221 1257
Q ss_pred ccEEEecCCCCCc
Q 006172 602 IDFVICQNSVPQI 614 (658)
Q Consensus 602 ~DLVIGGpPCQ~F 614 (658)
||+|+-+..+..+
T Consensus 143 fD~Ii~~~~~~~~ 155 (205)
T PRK13944 143 FDAIIVTAAASTI 155 (205)
T ss_pred ccEEEEccCcchh
Confidence 9988877665443
No 127
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=86.71 E-value=1.4 Score=44.74 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=55.1
Q ss_pred cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172 507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 586 (658)
Q Consensus 507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~ 586 (658)
|......+++.|+. ...-+|||+=||.|.+...|...|. .++++|+++...+..+... ....++.+|+.+
T Consensus 27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~ 96 (251)
T PRK10258 27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence 33333344454543 2346799999999999988888775 4789999998876655421 112245677765
Q ss_pred cChhhHHHhhhccCCccEEEecCC
Q 006172 587 LTTKKFESLIHKLGSIDFVICQNS 610 (658)
Q Consensus 587 Lt~~~Ie~l~~~~g~~DLVIGGpP 610 (658)
+.- ..+.||+|+...+
T Consensus 97 ~~~--------~~~~fD~V~s~~~ 112 (251)
T PRK10258 97 LPL--------ATATFDLAWSNLA 112 (251)
T ss_pred CcC--------CCCcEEEEEECch
Confidence 531 1246899886543
No 128
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=86.66 E-value=0.97 Score=44.45 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=53.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+||||-||.|.+...+.+.+... .++++|+++...+..+.... ....++.+|+.++.. ..+.+|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence 4789999999999999999988543 47899999988766654322 112244566655431 1246999
Q ss_pred EEecCCCCCc
Q 006172 605 VICQNSVPQI 614 (658)
Q Consensus 605 VIGGpPCQ~F 614 (658)
|+....++-+
T Consensus 102 vi~~~~l~~~ 111 (240)
T TIGR02072 102 IVSNLALQWC 111 (240)
T ss_pred EEEhhhhhhc
Confidence 9977666543
No 129
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.57 E-value=1.7 Score=45.76 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=35.9
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
+|||+=||.|...+-|.+.|++ |.++|+++.+....+.....
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence 8999999999999999888974 68999999998877765443
No 130
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.42 E-value=2 Score=43.30 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+|||+-||.|.++.-+.++ |- -..++++|+++......+.++...+.....+..+|..+... ..+.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------~~~~ 145 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------ENAP 145 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------cCCC
Confidence 35679999999999999777654 32 12478999999988877776654322222344556543211 1256
Q ss_pred ccEEEec
Q 006172 602 IDFVICQ 608 (658)
Q Consensus 602 ~DLVIGG 608 (658)
||+|+-+
T Consensus 146 fD~I~~~ 152 (212)
T PRK13942 146 YDRIYVT 152 (212)
T ss_pred cCEEEEC
Confidence 8887643
No 131
>PRK05785 hypothetical protein; Provisional
Probab=86.28 E-value=1.5 Score=44.76 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+||||=||.|-+...|.+. |. -++++|+++...+.-+. . . ..+.+|..++.- .-+.|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~----~---~-~~~~~d~~~lp~--------~d~sf 111 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLV----A---D-DKVVGSFEALPF--------RDKSF 111 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHh----c---c-ceEEechhhCCC--------CCCCE
Confidence 3578999999999998888887 43 47899999998765432 1 1 124566655432 12579
Q ss_pred cEEEecCCCCC
Q 006172 603 DFVICQNSVPQ 613 (658)
Q Consensus 603 DLVIGGpPCQ~ 613 (658)
|+|+.+.-.+.
T Consensus 112 D~v~~~~~l~~ 122 (226)
T PRK05785 112 DVVMSSFALHA 122 (226)
T ss_pred EEEEecChhhc
Confidence 99998765443
No 132
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=85.69 E-value=1.8 Score=44.20 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 565 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~ 565 (658)
+.+-+||++.||.|--.+-|-..|++ |++||+++.|.+.+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~ 75 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF 75 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence 45579999999999999999999986 78999999998764
No 133
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=85.42 E-value=2.6 Score=43.81 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=48.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~---~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+-||.|.+...+.+. |-. ..++++|+++...+..+.... ........++.+|+.++.- .-
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~ 143 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD 143 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence 4578999999999998877653 432 247899999998776653211 0011122245667765542 12
Q ss_pred CCccEEEecC
Q 006172 600 GSIDFVICQN 609 (658)
Q Consensus 600 g~~DLVIGGp 609 (658)
+.||+|+.+.
T Consensus 144 ~sfD~V~~~~ 153 (261)
T PLN02233 144 CYFDAITMGY 153 (261)
T ss_pred CCEeEEEEec
Confidence 4699998654
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.21 E-value=1.4 Score=45.32 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=56.0
Q ss_pred hhhcccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 006172 512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT 589 (658)
Q Consensus 512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~ 589 (658)
+.+|..|-...+ .-+||++.+|+|...+.+.++ +-. -.++++|+++.+.+..+.+|...+... ..++.+|..++
T Consensus 57 g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 57 GLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred HHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 444444544433 457999999999866555443 211 147899999999999999987654321 22345665432
Q ss_pred hhHHHhhhc--cCCccEEEecC
Q 006172 590 KKFESLIHK--LGSIDFVICQN 609 (658)
Q Consensus 590 ~~Ie~l~~~--~g~~DLVIGGp 609 (658)
+..+... .+.||+|.-..
T Consensus 133 --L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 133 --LDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred --HHHHHhCCCCCCCCEEEECC
Confidence 2222222 25789887553
No 135
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=85.00 E-value=3.7 Score=42.94 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.|.+|||+-||.|=+.+.+.+..=.. -++++|+++.-.++-+.-..+.+..+..++.+|..+|.-. -..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~--------D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP--------DNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC--------CCccC
Confidence 57999999999999998887654232 4678999998766655432222111222456666655421 14689
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+-++==+++.
T Consensus 122 ~vt~~fglrnv~ 133 (238)
T COG2226 122 AVTISFGLRNVT 133 (238)
T ss_pred EEEeeehhhcCC
Confidence 998776444443
No 136
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.89 E-value=1.1 Score=43.53 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 565 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~ 565 (658)
+.+-.|||.|+|.|.-.++..++|-+ .+++|+++...++.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA 229 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence 34567999999999999999999954 68899999876553
No 137
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.50 E-value=1 Score=49.85 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=43.1
Q ss_pred hcccchhhhcccccccCCCCCcccccCCCCC--hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 506 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 506 fqvdti~~~lsvLK~~f~~~l~vLdLFSGiG--GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
.++-.+. .+++++.-+..++++||-+||+| |+.++.+-.|. ..|+++|+|+.|.+.++.|-.
T Consensus 32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence 4444444 45666665556799999999999 99999997776 468899999999999998754
No 138
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.37 E-value=1.2 Score=50.17 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=81.9
Q ss_pred hhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhh--c---cC-CCCCCCccCcccCCCCCCCCCCccCCCCCCCCC
Q 006172 17 SSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNAL--Q---ES-NSQSSDSLDTLFGDKDANSPPEISTMVQPKEEP 90 (658)
Q Consensus 17 ~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al--~---~s-~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~ 90 (658)
+.+++|||-+.-...|+.-.-. ++|.-+.+|..-.+= + +. ..++.- + +. -.++.... +.=.
T Consensus 308 sllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~-~--------~r--~k~~n~~~-~~wv 374 (568)
T KOG2561|consen 308 SLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREI-L--------ER--KKYGNTPM-KKWV 374 (568)
T ss_pred HHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-H--------HH--HHhcCCCc-cccc
Confidence 5689999999999999988744 888888887653321 0 00 000000 0 00 00000000 0011
Q ss_pred CccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccch
Q 006172 91 NVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGT 170 (658)
Q Consensus 91 ~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~ 170 (658)
....+..|++|||..+.|..|+.+.- +++..-||.+-... |+.. ..-..+-..
T Consensus 375 -------n~rs~~rL~~mGyer~la~eaL~r~~--Ndi~~aldllq~es----------del~--------~n~~~~p~~ 427 (568)
T KOG2561|consen 375 -------NPRSLERLVSMGYERELAAEALRRNE--NDIQKALDLLQDES----------DELE--------SNKPKRPEQ 427 (568)
T ss_pred -------CHHHHHHHHhcchHhHHHHHHHHhcc--CcHHHHHHhcCCcc----------hhhh--------ccCCCCCcc
Confidence 33457899999999999999999944 44544444332111 1000 000111122
Q ss_pred h--hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006172 171 M--EITLQLLEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 171 m--~k~~~L~~MGf~e~Eas~AI~rcG~d 197 (658)
. .++..||.|||.+--|..|++-.|..
T Consensus 428 vd~~~la~Lv~mGF~e~~A~~ALe~~gnn 456 (568)
T KOG2561|consen 428 VDGISLAELVSMGFEEGKARSALEAGGNN 456 (568)
T ss_pred cchhhHHHHHHhccccchHHHHHHhcCCc
Confidence 3 34459999999999999999999876
No 139
>PRK10742 putative methyltransferase; Provisional
Probab=84.36 E-value=3.5 Score=43.51 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=54.7
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+|||+|+|.|..+.=+-..|.. |..||-++.....++.......+...+- +...|+=+..+.+.-+......||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence 48999999999998888888974 7889999999998887655422111110 012243334443332222224699
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|.-=||=.
T Consensus 167 VVYlDPMfp 175 (250)
T PRK10742 167 VVYLDPMFP 175 (250)
T ss_pred EEEECCCCC
Confidence 999888743
No 140
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=84.29 E-value=3 Score=40.76 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...+.+.+.....++++|+++......+..+. . .....+..+|+.++.. ..+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence 45789999999999999888877432257899999988777665442 1 1122345567665431 124688
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|+.
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 8764
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=83.93 E-value=2.5 Score=41.89 Aligned_cols=43 Identities=37% Similarity=0.359 Sum_probs=34.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence 4678999999999999988888864 778999998766665543
No 142
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=83.93 E-value=2.5 Score=44.77 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.|+.||=+..+-.+-..--.++|+|+++.-...++.+....+.....+...|-+++..... ...||
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd 158 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFD 158 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccc
Confidence 346699999999999877766544223588999999999998887665543332222344443332211 12599
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
.|+-=.||.+....
T Consensus 159 ~VlvDaPCSg~G~i 172 (283)
T PF01189_consen 159 RVLVDAPCSGLGTI 172 (283)
T ss_dssp EEEEECSCCCGGGT
T ss_pred hhhcCCCccchhhh
Confidence 99999999997654
No 143
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=83.75 E-value=2.1 Score=43.88 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+=||.|.+...|.+..-. ..++++|+++...+..+. .+..++.+|+.++.. .+.||
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~---------~~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARE-------RGVDARTGDVRDWKP---------KPDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC---------CCCce
Confidence 4578999999999999888876311 236899999987665432 123355677665431 25799
Q ss_pred EEEecCCCCCc
Q 006172 604 FVICQNSVPQI 614 (658)
Q Consensus 604 LVIGGpPCQ~F 614 (658)
+|+.....+-+
T Consensus 92 ~v~~~~~l~~~ 102 (255)
T PRK14103 92 VVVSNAALQWV 102 (255)
T ss_pred EEEEehhhhhC
Confidence 99998766544
No 144
>PRK00811 spermidine synthase; Provisional
Probab=83.51 E-value=2.2 Score=45.06 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=52.6
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI 596 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l~ 596 (658)
+++-+||+|-+|.|++..-+.+. +. +-+..||+|+...+..+.++...+ .+...++.+|..+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence 45678999999999998766554 54 468899999999999988875321 1222344566543211
Q ss_pred hccCCccEEEecC
Q 006172 597 HKLGSIDFVICQN 609 (658)
Q Consensus 597 ~~~g~~DLVIGGp 609 (658)
...+.+|+|+.-.
T Consensus 146 ~~~~~yDvIi~D~ 158 (283)
T PRK00811 146 ETENSFDVIIVDS 158 (283)
T ss_pred hCCCcccEEEECC
Confidence 1235799999754
No 145
>PLN02672 methionine S-methyltransferase
Probab=83.14 E-value=1.9 Score=53.66 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=37.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
+.+||||=||.|-+.+.+...+=. ..++++||++.+....+.|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 358999999999999998876522 3578999999999888877653
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=82.91 E-value=2.3 Score=50.60 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=36.9
Q ss_pred eEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172 551 GVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 610 (658)
Q Consensus 551 ~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 610 (658)
.++++|+|+.+....+.+....+... ..+..+|+.++.... ..+.+|+|+.=||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 37899999999999998877654332 124467777664211 1146899998887
No 147
>PLN03196 MOC1-like protein; Provisional
Probab=82.56 E-value=9.2 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.5
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFG 195 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG 195 (658)
.|+.+|.+|||+++|+..+|.+|=
T Consensus 342 ~kvefL~~~Gls~edI~~mv~k~P 365 (487)
T PLN03196 342 KHVEFLRGRGFSAQDVAKMVVRCP 365 (487)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 566689999999999999988873
No 148
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.33 E-value=3 Score=42.53 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+=||.|.+...|.+.. +-..++++|+++...+..+.... ...++.+|+.++.. ...+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence 45789999999999988887653 12357899999998777665321 22245567654422 13688
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+.....+
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 888766544
No 149
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.84 E-value=3.9 Score=44.37 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=45.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+..-+.+..-.-..++++|+++......+......+.....++.+|..+... ..+.+|
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD 151 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD 151 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence 457899999999999887766431111378999999876655544333222222334555543221 124577
Q ss_pred EEEec
Q 006172 604 FVICQ 608 (658)
Q Consensus 604 LVIGG 608 (658)
+|+-+
T Consensus 152 ~Ii~~ 156 (322)
T PRK13943 152 VIFVT 156 (322)
T ss_pred EEEEC
Confidence 76653
No 150
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=81.74 E-value=0.82 Score=46.33 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=32.9
Q ss_pred ccccccCC--CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 516 SVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 516 svLK~~f~--~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
..+.+++| ..-+++|+|+|.|...+.+...+ ..++.+|+++.....++..
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~ 61 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAV 61 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHH
Confidence 33445566 47789999999999988887655 3578899999988877743
No 151
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=80.87 E-value=4.7 Score=43.91 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=48.6
Q ss_pred CCCcccccCCCCChHHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCc-c-ccccccccChhhHHHhhhc
Q 006172 524 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL-V-QIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l-~-~~~DI~~Lt~~~Ie~l~~~ 598 (658)
.+.++||+=||+|++..-+- .-|. .++++|||+.+...-+.+-... +..+.+ + +..|...+- ..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence 45889999999998865443 3354 3688999999988887765443 121111 1 111222111 111112
Q ss_pred cCCccEEEecCCC
Q 006172 599 LGSIDFVICQNSV 611 (658)
Q Consensus 599 ~g~~DLVIGGpPC 611 (658)
.+.||+|+.=||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 3579999999983
No 152
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=80.80 E-value=2.2 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=25.7
Q ss_pred hHHHHHhcCCCHHHHHHHHHhh--CCCCChhhhh
Q 006172 173 ITLQLLEMGFSENQVSLAIEKF--GSKTPISELA 204 (658)
Q Consensus 173 k~~~L~~MGf~e~Eas~AI~rc--G~da~i~eL~ 204 (658)
-+..|+..||++.||..|+.+. +++.++++++
T Consensus 6 ~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 6 ALEALISLGYSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 3458999999999999999999 7888887765
No 153
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=80.70 E-value=4.8 Score=44.89 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=68.5
Q ss_pred ccccCCCCCcccccCCCCChHHH--HHHHc------------------------------------CCceeeEEEeeCCH
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEV--TLHRL------------------------------------GIKLKGVISIETSE 559 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlsl--GL~~a------------------------------------Gi~~k~vvavEid~ 559 (658)
|-.+.+. -.++|-|||.|.+-+ ||..+ |-++..++++|||+
T Consensus 186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 4444444 578999999998743 33222 12223477999999
Q ss_pred HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCC
Q 006172 560 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF 638 (658)
Q Consensus 560 ~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~ 638 (658)
...+.-+.|+........+ +...|++.|... +..+|+||+-||=- .|-|-+..
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPYG------------------eRlg~~~~ 318 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPYG------------------ERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCcc------------------hhcCChhh
Confidence 9999988888765433222 345677766643 24789999888721 12221212
Q ss_pred CcchHHHHHHHHHHh
Q 006172 639 DFSLYYEFVRVVQRV 653 (658)
Q Consensus 639 Rs~Lf~Ey~RIV~~v 653 (658)
-..||.+|.+.+++.
T Consensus 319 v~~LY~~fg~~lk~~ 333 (381)
T COG0116 319 VAKLYREFGRTLKRL 333 (381)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345899999888554
No 154
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=80.35 E-value=5.3 Score=38.33 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=53.1
Q ss_pred chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
.-++...|..-||+.+.|..||++..+++. .++..|+.=.- .. ... .+
T Consensus 78 ~~~I~~~L~~kGi~~~~I~~~l~~~~~d~~-e~a~~~~~k~~----~~--------------------~~~----~~--- 125 (157)
T PRK00117 78 PRRIRQELRQKGVDREIIEEALAELDIDWE-ELARELARKKF----RR--------------------PLP----DD--- 125 (157)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCccHH-HHHHHHHHHHc----CC--------------------CCC----CC---
Confidence 446889999999999999999999874333 33333332110 00 000 00
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 125 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d 125 (658)
.....+.+.+|+.=||+-+.|..||++..++
T Consensus 126 ---~~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~~ 156 (157)
T PRK00117 126 ---AKEKAKLVRFLARRGFSMDVIQRVLRNALDD 156 (157)
T ss_pred ---HHHHHHHHHHHHHCCCCHHHHHHHHHhhhcc
Confidence 0125677899999999999999999986553
No 155
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.23 E-value=4.5 Score=39.93 Aligned_cols=75 Identities=21% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+.+|||+-||.|.+...+...+-....++++|+++......+.++...+.. ...+...|+.++.. ..+.+|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence 478999999999999988887721235789999998877777655332111 12234556654431 124688
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|+.
T Consensus 124 ~I~~ 127 (239)
T PRK00216 124 AVTI 127 (239)
T ss_pred EEEE
Confidence 8874
No 156
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.98 E-value=2.4 Score=46.64 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~-~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.|-.|||=|||.||+-+-.-..|.. ++++||+....+=-+.|....+-.+-.+.. .|++++. +.+ ..|
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v 265 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV 265 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence 4567999999999998888888985 678899988655544443322111111222 2666555 211 149
Q ss_pred cEEEecCCC
Q 006172 603 DFVICQNSV 611 (658)
Q Consensus 603 DLVIGGpPC 611 (658)
|-|+.=||=
T Consensus 266 daIatDPPY 274 (347)
T COG1041 266 DAIATDPPY 274 (347)
T ss_pred ceEEecCCC
Confidence 999999884
No 157
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.31 E-value=1.9 Score=47.91 Aligned_cols=174 Identities=14% Similarity=0.151 Sum_probs=89.9
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccC---------CCCC-------CCccCcccCCCCCC---
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQES---------NSQS-------SDSLDTLFGDKDAN--- 75 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s---------~~~s-------s~s~~~~~~d~~e~--- 75 (658)
.|..++.|||+++.|.+||.--= +|.|-=|||||+- +=+. +... +-...++|.--...
T Consensus 159 ~I~~i~eMGf~R~qV~~ALRAaf-NNPdRAVEYL~tG--IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~a~~~~~~ 235 (378)
T TIGR00601 159 TIEEIMEMGYEREEVERALRAAF-NNPDRAVEYLLTG--IPEDPEQPEPVQQTAASTAAATTETPQHGSVFEQAAQGGTE 235 (378)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHh-CCHHHHHHHHHhC--CCccccccccCCCcccccccccCCCCCCcchhhhhhccccc
Confidence 78999999999999999998754 4999999999996 1111 0000 00000000000000
Q ss_pred -CCCCccCCCCCCCCCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhh-----cccccC--
Q 006172 76 -SPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS-----ENFEKE-- 147 (658)
Q Consensus 76 -~~~~~s~~~~~~~e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a-----~~~~~e-- 147 (658)
..+....+.. ...+.....++.. +..+|.- -++.+--.|+++|..++ +|+..|-..|.. .....+
T Consensus 236 ~~~~~~~~g~~--~l~~Lr~~pqf~~-lR~~vq~--NP~~L~~lLqql~~~nP--~l~q~I~~n~e~Fl~ll~~~~~~~~ 308 (378)
T TIGR00601 236 QPATEAAQGGN--PLEFLRNQPQFQQ-LRQVVQQ--NPQLLPPLLQQIGQENP--QLLQQISQHPEQFLQMLNEPVGELA 308 (378)
T ss_pred ccccccccCCc--hHHHhhcCHHHHH-HHHHHHH--CHHHHHHHHHHHHhhCH--HHHHHHHHCHHHHHHHhcCcccccc
Confidence 0000000000 1111111111222 2233322 35666777899999997 899988765542 221111
Q ss_pred -CCCCCCCCCCCCC-CC-C---cccccchhhhHHHHHhcCCCHHHHHHHHHhhCCCC
Q 006172 148 -TDDAPHDNDGTNE-DK-S---DETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKT 198 (658)
Q Consensus 148 -~~D~~~~~d~~~e-d~-~---~e~~~~~m~k~~~L~~MGf~e~Eas~AI~rcG~da 198 (658)
..+..+..+...+ +. . ..-.-++++.+..|..|||++..|-.|---|..+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~i~lT~eE~~AIeRL~~LGF~r~~viqaY~ACdKNE 365 (378)
T TIGR00601 309 GESDMEGGVGAIAEAGLPQMNQIQVTPEEKEAIERLCALGFDRGLVIQAYFACDKNE 365 (378)
T ss_pred cccccccccccccccCcccccccccCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcH
Confidence 0010000000000 00 0 01112346888899999999999999999998873
No 158
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=79.31 E-value=4.3 Score=39.67 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~--~~g 600 (658)
+.+-+|||+=||.||++..+.+....-..++++|+++.. + ..+..++..|+.+... ++.+.. ..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence 356789999999999988876654322247899999853 1 1122345567765321 222211 124
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.+|+|+...
T Consensus 98 ~~D~V~~~~ 106 (188)
T TIGR00438 98 KVDVVMSDA 106 (188)
T ss_pred CccEEEcCC
Confidence 699999643
No 159
>PRK08317 hypothetical protein; Provisional
Probab=78.98 E-value=6.2 Score=38.64 Aligned_cols=45 Identities=27% Similarity=0.184 Sum_probs=33.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
.+.+|||+-||.|++...+.+...+-..++++|+++......+..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 457899999999999888876532223578999998876555543
No 160
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=78.66 E-value=2.9 Score=46.83 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+||||-||.|.+...|-+.+. -++++|+++.....-+.. ........++..|+.+.... + ..+.||+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~--~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESI--NGHYKNVKFMCADVTSPDLN-I-----SDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHH--hccCCceEEEEecccccccC-C-----CCCCEEE
Confidence 45899999999999999988764 468999999876543221 11111222445666432110 0 1257999
Q ss_pred EEecCCCCCcc
Q 006172 605 VICQNSVPQIP 615 (658)
Q Consensus 605 VIGGpPCQ~FS 615 (658)
|+...++.-++
T Consensus 107 I~~~~~l~~l~ 117 (475)
T PLN02336 107 IFSNWLLMYLS 117 (475)
T ss_pred EehhhhHHhCC
Confidence 99888766543
No 161
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=78.65 E-value=3 Score=40.41 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=49.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhh-ccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~-~~Ie~l~~-~~g~ 601 (658)
++.+||||=|+.||++..+.+.+-+-..+++||+.+.. ..++...+.+||.+... +.|..... ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999998888887334578999998862 12233456788876533 22332221 1268
Q ss_pred ccEEE--ecCCCCCcc
Q 006172 602 IDFVI--CQNSVPQIP 615 (658)
Q Consensus 602 ~DLVI--GGpPCQ~FS 615 (658)
+|+|+ |+++|++..
T Consensus 92 ~dlv~~D~~~~~~g~~ 107 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR 107 (181)
T ss_dssp ESEEEE-------SSH
T ss_pred cceeccccccCCCCch
Confidence 99998 456777653
No 162
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=78.10 E-value=6.3 Score=39.97 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
+-++|||=||-|.=++=|.+.|++ |.|+|+++.+...++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRL 71 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHH
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHH
Confidence 468999999999999999999996 68899999998877654
No 163
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=78.08 E-value=3 Score=40.97 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=48.5
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLI 596 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~-Lt~~~Ie~l~ 596 (658)
+.++.+.+.+|||+-||.|.+...+.+.+. . .++++|+++.+....+. . +..++..|+.+ +.. +
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-~-~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~--~---- 71 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ-V-RGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEA--F---- 71 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccC-C-cEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccc--c----
Confidence 334445567899999999999988865431 1 35789999987655432 1 12234555543 110 0
Q ss_pred hccCCccEEEecCCCCCc
Q 006172 597 HKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 597 ~~~g~~DLVIGGpPCQ~F 614 (658)
..+.+|+|+...+.+-+
T Consensus 72 -~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 72 -PDKSFDYVILSQTLQAT 88 (194)
T ss_pred -CCCCcCEEEEhhHhHcC
Confidence 11457888776655433
No 164
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=77.51 E-value=4.6 Score=41.66 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=43.7
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|=++..+.+ +|-.. -++++|+++.-.+.-+.--...+.....++.+|..++.-.+ ..|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence 457999999999999887765 45332 46789999987766654322222222234567777765321 479
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9998776
No 165
>PRK04148 hypothetical protein; Provisional
Probab=77.38 E-value=5.6 Score=38.27 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=47.6
Q ss_pred CCcccccCCCCCh-HHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGG-AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGG-lslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+.+++++=+|-|. +...|.++|++ |+++|+++.+....+.. +..+..+||.+-+.+ .+.++|
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~---ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~-------~y~~a~ 79 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFD---VIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE-------IYKNAK 79 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCE---EEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH-------HHhcCC
Confidence 4789999999886 88889999986 68899999987665532 334667888755542 124566
Q ss_pred EEEec
Q 006172 604 FVICQ 608 (658)
Q Consensus 604 LVIGG 608 (658)
+|--.
T Consensus 80 liysi 84 (134)
T PRK04148 80 LIYSI 84 (134)
T ss_pred EEEEe
Confidence 66543
No 166
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=77.20 E-value=7.2 Score=40.76 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
++-+||+|.+|.|++...+.+.+ ....+..+|+|+...+..+.++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 44599999999999887776654 234578899999988888877643
No 167
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=76.58 E-value=6.1 Score=40.77 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCChHHHHH-HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL-~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+-+|||+=||.|...+-+ ...|-. ..++++|+++......+.+....+.....+..+|+.++.. ..+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------~~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------ADNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------CCCc
Confidence 35679999999997655433 344543 2478899999988777765443222122234466655431 1246
Q ss_pred ccEEEec
Q 006172 602 IDFVICQ 608 (658)
Q Consensus 602 ~DLVIGG 608 (658)
||+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 8888754
No 168
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=76.56 E-value=3.9 Score=41.75 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=58.9
Q ss_pred cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172 507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 586 (658)
Q Consensus 507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~ 586 (658)
+...+++.+..|+ ...+.+||++-||.|=++.-|-.+.=+.-.|+++|+++.....-+.++...+.....+..+|...
T Consensus 57 ~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 3445666677676 45679999999999977766665522323478999999877666666654433333355666543
Q ss_pred cChhhHHHhhhccCCccEEEecCCCCCc
Q 006172 587 LTTKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 587 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
--. ..++||.|+-+.-|...
T Consensus 135 g~~--------~~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 135 GWP--------EEAPFDRIIVTAAVPEI 154 (209)
T ss_dssp TTG--------GG-SEEEEEESSBBSS-
T ss_pred ccc--------cCCCcCEEEEeeccchH
Confidence 221 23689988877766543
No 169
>PRK06202 hypothetical protein; Provisional
Probab=76.32 E-value=7.5 Score=39.21 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCCcccccCCCCChHHHHHHH----cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHR----LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~----aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
..+.+||||=||.|++...|.+ .|... -++++|+++......+... ...+..+...|...+.. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~---~~~~~~~~~~~~~~l~~--------~ 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANP---RRPGVTFRQAVSDELVA--------E 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhcc---ccCCCeEEEEecccccc--------c
Confidence 3557899999999998887754 46543 4789999999876655321 11122222333322221 1
Q ss_pred cCCccEEEecCCCC
Q 006172 599 LGSIDFVICQNSVP 612 (658)
Q Consensus 599 ~g~~DLVIGGpPCQ 612 (658)
.+.+|+|+...-..
T Consensus 127 ~~~fD~V~~~~~lh 140 (232)
T PRK06202 127 GERFDVVTSNHFLH 140 (232)
T ss_pred CCCccEEEECCeee
Confidence 25799999865433
No 170
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=75.30 E-value=6 Score=41.97 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=56.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+||++=.|.|+++..|-+.|-. |+++|+|+....+++..... .....++.+|+-+++-..+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhc-------CCCE
Confidence 568999999999999999999854 78999999999999875421 11223667888777654321 4677
Q ss_pred EEecCCCC
Q 006172 605 VICQNSVP 612 (658)
Q Consensus 605 VIGGpPCQ 612 (658)
|+|--|=+
T Consensus 99 vVaNlPY~ 106 (259)
T COG0030 99 VVANLPYN 106 (259)
T ss_pred EEEcCCCc
Confidence 88777754
No 171
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=75.21 E-value=8.3 Score=42.33 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||+.|+.||=+.-+-.+.-+ -.+|+|+|+++.-.+.++.+-..-+.....+...|=+.+... ....+.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~-----~~~~~~f 230 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL-----LPGGEKF 230 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc-----ccccCcC
Confidence 3588999999999998877776643 234699999999888888765544332222333333322211 1111249
Q ss_pred cEEEecCCCCCcccCC
Q 006172 603 DFVICQNSVPQIPNSK 618 (658)
Q Consensus 603 DLVIGGpPCQ~FS~an 618 (658)
|.|.-=+||.+..+..
T Consensus 231 D~iLlDaPCSg~G~ir 246 (355)
T COG0144 231 DRILLDAPCSGTGVIR 246 (355)
T ss_pred cEEEECCCCCCCcccc
Confidence 9999999999987653
No 172
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=75.05 E-value=8.8 Score=41.62 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=49.9
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 606 (658)
+||||=||.|=+.+.+.+..=. .-+.-+|+|..|.+.-+.++..++-.+..+...|+-+ .+ .+.||+||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~----~v------~~kfd~Ii 229 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE----PV------EGKFDLII 229 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc----cc------cccccEEE
Confidence 8999999999888777766532 3456799999999988888764433332233444321 11 13699999
Q ss_pred ecCC
Q 006172 607 CQNS 610 (658)
Q Consensus 607 GGpP 610 (658)
.-||
T Consensus 230 sNPP 233 (300)
T COG2813 230 SNPP 233 (300)
T ss_pred eCCC
Confidence 8887
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=74.70 E-value=7.7 Score=39.23 Aligned_cols=87 Identities=24% Similarity=0.224 Sum_probs=67.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..++.||+|=.|.|=++.++-+-|++-..+.++|++++--..|..-+ ++..++.+|.-++...-=+ .+-..|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e---~~gq~~ 118 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGE---HKGQFF 118 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhh---cCCCee
Confidence 46789999999999999999999999999999999999877776543 3455777877666532101 122568
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|.||.|-|--+|+..
T Consensus 119 D~viS~lPll~~P~~ 133 (194)
T COG3963 119 DSVISGLPLLNFPMH 133 (194)
T ss_pred eeEEeccccccCcHH
Confidence 999999999999853
No 174
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.20 E-value=8.7 Score=31.78 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=44.9
Q ss_pred cccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 006172 529 LSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 607 (658)
Q Consensus 529 LdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 607 (658)
||+=||.|-....|.+. +. -++++|+++...+..+.++... +..+...|+.++.-. -+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~--------~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP--------DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS---------TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc--------ccccccccc
Confidence 56778999999999988 54 4789999999888777654322 222567777777421 257999986
Q ss_pred cC
Q 006172 608 QN 609 (658)
Q Consensus 608 Gp 609 (658)
..
T Consensus 67 ~~ 68 (95)
T PF08241_consen 67 NS 68 (95)
T ss_dssp ES
T ss_pred cc
Confidence 54
No 175
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=74.11 E-value=1.2 Score=45.58 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=13.8
Q ss_pred CCCCcccccCCCCChH
Q 006172 523 PGGLTMLSVFSGIGGA 538 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGl 538 (658)
.+.|..||+|||||||
T Consensus 187 ~~~LaTLDIFAGCGGL 202 (202)
T cd04708 187 ENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccceeeeecccCCC
Confidence 3568899999999996
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=73.40 E-value=6.6 Score=40.73 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 566 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k 566 (658)
.+-+||..=||-|==.+-|...|++ |++||+++.|...+.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~ 82 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFF 82 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHH
Confidence 4578988888888878888999996 789999999987653
No 177
>PRK06922 hypothetical protein; Provisional
Probab=73.06 E-value=6.2 Score=46.93 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=53.1
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
+.++. .+.+|||+.||.|.+...+.+.. +-.-++++|+++......+...... .....++.+|+.++.. .+
T Consensus 413 i~d~~-~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~-g~~ie~I~gDa~dLp~-~f----- 483 (677)
T PRK06922 413 ILDYI-KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE-GRSWNVIKGDAINLSS-SF----- 483 (677)
T ss_pred Hhhhc-CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-CCCeEEEEcchHhCcc-cc-----
Confidence 33444 35799999999999988776643 2235789999999877766543221 1111234566655431 11
Q ss_pred ccCCccEEEecCCCC
Q 006172 598 KLGSIDFVICQNSVP 612 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ 612 (658)
..+.||+|+..++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 125799999876543
No 178
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=72.92 E-value=5.9 Score=43.22 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+||||-||=||=-.=...+++. -++++||+..+..-.+.-|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHH
Confidence 6799999999999977777788875 6999999999887666555
No 179
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=72.61 E-value=5.2 Score=36.75 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=34.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 564 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t 564 (658)
.+.+.+|||+=||.|.+...|+..|++ ++++|+++.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFE---VTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSE---EEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCE---EEEEECCHHHHhh
Confidence 456789999999999999999999984 6789999987544
No 180
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=72.06 E-value=8.1 Score=38.93 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~ 568 (658)
+.+-+|||+=||.|-....|.+. +. ..+.++|+++.+.+..+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~ 86 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY 86 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh
Confidence 45568999999999999999876 22 2478999999998887764
No 181
>PRK14134 recX recombination regulator RecX; Provisional
Probab=71.91 E-value=33 Score=36.65 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=76.8
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCC---CHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~---d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
|+..|..-||+++.|..||+..=+. |-..-.+..+....-. -
T Consensus 81 lr~KL~~k~~~~~~Ie~vI~~L~e~~yldD~ryA~~yv~~~~~~-~---------------------------------- 125 (283)
T PRK14134 81 IKEKLYLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKINS-Y---------------------------------- 125 (283)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh-h----------------------------------
Confidence 8888898899999999988776433 5566666665543310 0
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchh
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM 171 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m 171 (658)
..-.....|..-|.+.+.|..||.+..++.. .+++--++.-..... .. .+.+....-
T Consensus 126 -----G~~~I~~eL~qKGI~~~iIe~al~~~~~e~e-~e~a~~l~~Kk~~~~----~~-------------~~~~~~k~k 182 (283)
T PRK14134 126 -----GRNKIKYTLLNKGIKENIIIEKINNIDEEKE-KKVAYKLAEKKYKIL----IL-------------SEKNKFKIY 182 (283)
T ss_pred -----hHHHHHHHHHHCCCCHHHHHHHHHhCChhhH-HHHHHHHHHHhhccc----cc-------------ccccHHHHH
Confidence 0234557899999999999999998654432 122222222111110 00 000111223
Q ss_pred hhHH-HHHhcCCCHHHHHHHHHhhCC
Q 006172 172 EITL-QLLEMGFSENQVSLAIEKFGS 196 (658)
Q Consensus 172 ~k~~-~L~~MGf~e~Eas~AI~rcG~ 196 (658)
.|+. +|..=||+-+.+..||..+-.
T Consensus 183 ~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 183 KKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 5664 999999999999999988754
No 182
>PRK13699 putative methylase; Provisional
Probab=71.87 E-value=6 Score=40.67 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=35.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
..+-.|||-|+|.|..-++.+++|-+ .+++|+++...++....+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~---~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRR---YIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCC---EEEEecCHHHHHHHHHHH
Confidence 34567999999999999999999975 578999998766554433
No 183
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=71.82 E-value=7.4 Score=39.26 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
.++.+..|+.+||++.++.+|+.+..++.++++++-..+
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~aL 183 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRKAL 183 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 467889999999999999999999987777787776554
No 184
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=71.69 E-value=9.5 Score=39.18 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=41.6
Q ss_pred CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcccccccccc
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQAL 587 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~L 587 (658)
.+.+.+|||+=||.|.....+.+. ..+---++++|+++...+..+......+.. ...++.+|+.++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 356678999999999988777652 111124789999998877766554322111 122445666544
No 185
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=71.58 E-value=6.7 Score=41.96 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=37.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
++++||.=||.|=++.-|-++|. .|.++|+.+.+..+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 68899999999999999999996 478999999999998865
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=70.15 E-value=8.7 Score=43.62 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=50.6
Q ss_pred CCcccccCCCCChHHHHHHHcC----CceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLG----IKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aG----i~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
...|+++=||-|-+....-+|| -. .-|+|||.++.|..+++..-...+ .....++.+|++++...+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a-~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-------- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGA-VKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-------- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCE-SEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCC-eEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC--------
Confidence 4679999999999987666665 22 357899999999888754211111 122346789999887532
Q ss_pred CCccEEE----ecCCCCCc
Q 006172 600 GSIDFVI----CQNSVPQI 614 (658)
Q Consensus 600 g~~DLVI----GGpPCQ~F 614 (658)
.+|||| |.+=|+-+
T Consensus 258 -kvDIIVSElLGsfg~nEl 275 (448)
T PF05185_consen 258 -KVDIIVSELLGSFGDNEL 275 (448)
T ss_dssp --EEEEEE---BTTBTTTS
T ss_pred -ceeEEEEeccCCcccccc
Confidence 689876 55444444
No 187
>PRK03612 spermidine synthase; Provisional
Probab=69.89 E-value=11 Score=43.51 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH--hhhcC-----CCCCccccccccccChhhHHHh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW--WESSG-----QTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~--~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
+++-+||++-+|.|++...+.+.+ .++.+..||||+...+..+.+ +...+ .+...++.+|.++. +.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~----l~-- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW----LR-- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH----HH--
Confidence 455689999999999987776654 235688999999999988873 22211 11222344555432 11
Q ss_pred hhccCCccEEEecCCC
Q 006172 596 IHKLGSIDFVICQNSV 611 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPC 611 (658)
...+.+|+|+.-+|-
T Consensus 369 -~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 -KLAEKFDVIIVDLPD 383 (521)
T ss_pred -hCCCCCCEEEEeCCC
Confidence 122579999998764
No 188
>PRK14134 recX recombination regulator RecX; Provisional
Probab=69.15 E-value=82 Score=33.73 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=51.8
Q ss_pred chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
.-.+...|..-|.+.++|..||.+..+++...++..|+. +--.. . . . .+..
T Consensus 127 ~~~I~~eL~qKGI~~~iIe~al~~~~~e~e~e~a~~l~~-----Kk~~~----~-------------~--~----~~~~- 177 (283)
T PRK14134 127 RNKIKYTLLNKGIKENIIIEKINNIDEEKEKKVAYKLAE-----KKYKI----L-------------I--L----SEKN- 177 (283)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCChhhHHHHHHHHHH-----Hhhcc----c-------------c--c----cccc-
Confidence 345788999999999999999999865543233333332 11000 0 0 0 0000
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCC
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 124 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~ 124 (658)
..-...+.+.+|+.-||+-+.|..||+++-.
T Consensus 178 --~~k~k~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 178 --KFKIYKKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred --HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 0112456778999999999999999998743
No 189
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.51 E-value=7 Score=43.53 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 95 EGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
.++....+..++.|||++++|..||.-.=. ++ +-=||||++.
T Consensus 153 g~~~e~~I~~i~eMGf~R~qV~~ALRAafN-NP-dRAVEYL~tG 194 (378)
T TIGR00601 153 GSERETTIEEIMEMGYEREEVERALRAAFN-NP-DRAVEYLLTG 194 (378)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHhC-CH-HHHHHHHHhC
Confidence 345778999999999999999999988433 34 6778999987
No 190
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=67.49 E-value=98 Score=28.37 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=63.1
Q ss_pred ccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhh-ccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCcccc
Q 006172 20 IGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNAL-QESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDE 95 (658)
Q Consensus 20 i~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al-~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~~ 95 (658)
..-||+++.|..||+.. |==|-....+..+....- ..-
T Consensus 2 ~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-------------------------------------- 43 (121)
T PF02631_consen 2 KRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-------------------------------------- 43 (121)
T ss_dssp HHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---------------------------------------
T ss_pred cccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc--------------------------------------
Confidence 34689999999998776 544666666666654442 111
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchhhhHH
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL 175 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m~k~~ 175 (658)
+ .-.....|..-|.+.+.+..|++ +... .+.+.-++.-....... .+ ....-.|+.
T Consensus 44 G-~~~I~~~L~~kGi~~~~i~~~l~---~~~~-~e~a~~~~~kk~~~~~~--~~-----------------~~~~~~K~~ 99 (121)
T PF02631_consen 44 G-PRRIRQKLKQKGIDREIIEEALE---EYDE-EEEALELAEKKYRRYRK--PS-----------------DRKRKQKLI 99 (121)
T ss_dssp --HHHHHHHHHHTT--HHHHHHHHT---CS-H-HHHHHHHHHHHHHHTTT--S------------------CHHHHHHHH
T ss_pred c-HHHHHHHHHHHCCChHHHHHHHH---HhhH-HHHHHHHHHHHHhcccC--CC-----------------CHHHHHHHH
Confidence 0 33466889999999999999999 2222 23333333222222100 00 012335665
Q ss_pred -HHHhcCCCHHHHHHHHHh
Q 006172 176 -QLLEMGFSENQVSLAIEK 193 (658)
Q Consensus 176 -~L~~MGf~e~Eas~AI~r 193 (658)
+|+.-||+.+.+..||.+
T Consensus 100 ~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 100 RFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHTT--HHHHHHHCHH
T ss_pred HHHHHCCCCHHHHHHHHhh
Confidence 999999999999999887
No 191
>PRK11524 putative methyltransferase; Provisional
Probab=66.89 E-value=7.3 Score=41.06 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~ 567 (658)
..+=.|||-|+|.|.-.++.+++|= ..+++|+++....+.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHH
Confidence 3456699999999999999999994 46899999987766554
No 192
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=66.37 E-value=11 Score=38.51 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=50.7
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 593 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie 593 (658)
|+.+.++-+.+-+||||=||-|-+-.-|.. .+. ...++|||+......- ..|..++.+|+.+ .+.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv-------~rGv~Viq~Dld~----gL~ 69 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACV-------ARGVSVIQGDLDE----GLA 69 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHH-------HcCCCEEECCHHH----hHh
Confidence 444556677789999999999988777765 454 3688999999754432 2355577787753 122
Q ss_pred HhhhccCCccEEEe
Q 006172 594 SLIHKLGSIDFVIC 607 (658)
Q Consensus 594 ~l~~~~g~~DLVIG 607 (658)
.+ .-..||.||-
T Consensus 70 ~f--~d~sFD~VIl 81 (193)
T PF07021_consen 70 DF--PDQSFDYVIL 81 (193)
T ss_pred hC--CCCCccEEeh
Confidence 11 1256787774
No 193
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=66.27 E-value=7.1 Score=40.00 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-cCC--CC---------CccccccccccChhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-SGQ--TG---------ELVQIEDIQALTTKK 591 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-~n~--~g---------~l~~~~DI~~Lt~~~ 591 (658)
.+-+||..-||-|=--+-|-..|++ |+++|+++.|++........ ... .+ ..+..+|+-+++.+.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~---VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHD---VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEE---EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCe---EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4467999999999888888899985 68999999998776321111 000 00 013456777666543
Q ss_pred HHHhhhccCCccEEEe
Q 006172 592 FESLIHKLGSIDFVIC 607 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIG 607 (658)
+ |.||+|.=
T Consensus 114 ~-------g~fD~iyD 122 (218)
T PF05724_consen 114 V-------GKFDLIYD 122 (218)
T ss_dssp H-------HSEEEEEE
T ss_pred c-------CCceEEEE
Confidence 3 57898874
No 194
>PRK14136 recX recombination regulator RecX; Provisional
Probab=65.71 E-value=77 Score=34.72 Aligned_cols=76 Identities=11% Similarity=0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchhhhH-HHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEIT-LQL 177 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m~k~-~~L 177 (658)
......|..-|.+.+.|..||+++.+ .. .+++-.++.-.. ..... + .....|. .+|
T Consensus 229 ~rIrqELrQKGId~eLIEqALeeieE-DE-~E~A~~L~eKK~----~~~~~-----------d------~kek~K~iRfL 285 (309)
T PRK14136 229 ARIVSELKRHAVGDALVESVGAQLRE-TE-FERAQAVWRKKF----GALPQ-----------T------PAERAKQARFL 285 (309)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhccH-hH-HHHHHHHHHHHh----cccCc-----------C------HHHHHHHHHHH
Confidence 34568899999999999999998733 22 122222222222 11000 0 0122344 499
Q ss_pred HhcCCCHHHHHHHHHhhCCC
Q 006172 178 LEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 178 ~~MGf~e~Eas~AI~rcG~d 197 (658)
..-||+-+.+..+|..+..+
T Consensus 286 ~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 286 AARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred HHCCCCHHHHHHHHHhchhc
Confidence 99999999999999876544
No 195
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=65.58 E-value=13 Score=37.71 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~---G~d~~i~~L~d~I~ 136 (658)
.++.+..|+.+||++.++.+||.++ ..+.++++++-..|
T Consensus 152 ~~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aL 193 (197)
T PRK14603 152 AEDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLIRKAL 193 (197)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 5678899999999999999999998 33445677665544
No 196
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=65.55 E-value=16 Score=39.52 Aligned_cols=36 Identities=31% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHH
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR 562 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~ 562 (658)
+-+|||+=||.|.+...+...|.. .|+++|.++...
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l 158 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFL 158 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHH
Confidence 468999999999999999888864 488999998654
No 197
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=65.16 E-value=12 Score=38.89 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=46.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCce--eeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKL--KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~--k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+|||+=||.|.+...|.+..-.. ..++++|+++.+.+..+.. .+...+..+|+.++.-. .+.|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~--------~~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFA--------DQSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCc--------CCce
Confidence 3679999999999988886542111 1478999999987765542 22233556777665421 2468
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 88874
No 198
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=64.61 E-value=23 Score=36.12 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=41.8
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG 573 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n 573 (658)
|+.|... .+-+++|+=||+|.+++-+-.+|-. --++|+|-++.+.++.++|....+
T Consensus 27 ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC
Confidence 4556543 3457999988888877766666754 457899999999999999876554
No 199
>PRK04266 fibrillarin; Provisional
Probab=64.43 E-value=19 Score=37.03 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|+++..+.+.-=. ..|+++|+++...+.+...-.. .++...+.+|+.+.. ....+ ...||
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~--~~~~l---~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPE--RYAHV---VEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcc--hhhhc---cccCC
Confidence 5678999999999999888764201 2589999999765544332111 122335567876421 10111 13589
Q ss_pred EEEec
Q 006172 604 FVICQ 608 (658)
Q Consensus 604 LVIGG 608 (658)
+|+-.
T Consensus 144 ~i~~d 148 (226)
T PRK04266 144 VIYQD 148 (226)
T ss_pred EEEEC
Confidence 98843
No 200
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=63.86 E-value=6.4 Score=40.62 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||=||.|=.+++-.++|-. -+++.||++.+...++.|= ++.|.. |.-+..+ ++...+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa---~angv~-----i~~~~~d----~~g~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNA---AANGVS-----ILFTHAD----LIGSPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcch---hhccce-----eEEeecc----ccCCCccee
Confidence 5689999999999999999999975 4789999999988776532 222321 2111111 112346789
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
||+.|-=|-+.+.+
T Consensus 145 l~LagDlfy~~~~a 158 (218)
T COG3897 145 LLLAGDLFYNHTEA 158 (218)
T ss_pred EEEeeceecCchHH
Confidence 98888877666543
No 201
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=63.58 E-value=22 Score=36.03 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+=||.|.+...+-+.. .+-..++++|+++......+........ ....++.+|+.++.. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------K 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----------C
Confidence 456789999999999988876642 2112478999999888777665443211 122345677765531 3
Q ss_pred CccEEEecCCCCCc
Q 006172 601 SIDFVICQNSVPQI 614 (658)
Q Consensus 601 ~~DLVIGGpPCQ~F 614 (658)
.+|+|+.....+-+
T Consensus 122 ~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 122 NASMVILNFTLQFL 135 (239)
T ss_pred CCCEEeeecchhhC
Confidence 56777766654443
No 202
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=62.99 E-value=15 Score=39.02 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.3
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF 194 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc 194 (658)
.|+..|.++||+++|+..++.+|
T Consensus 245 ~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 245 PKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHhcCcHHHHHHHHHhC
Confidence 56669999999999999988887
No 203
>PLN02476 O-methyltransferase
Probab=62.68 E-value=19 Score=38.63 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=56.4
Q ss_pred hhhcccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccCh
Q 006172 512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTT 589 (658)
Q Consensus 512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~ 589 (658)
+.+|..|-... +.-+||++.+|+|..++.+-++ +=. -.++++|+++...+.-+.+|...+... ..++.+|..+
T Consensus 107 g~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--- 181 (278)
T PLN02476 107 AQLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--- 181 (278)
T ss_pred HHHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH---
Confidence 33344444433 3468999999999998877653 211 137899999999999999998764321 2233455432
Q ss_pred hhHHHhhhc--cCCccEEEecCC
Q 006172 590 KKFESLIHK--LGSIDFVICQNS 610 (658)
Q Consensus 590 ~~Ie~l~~~--~g~~DLVIGGpP 610 (658)
.|+.+... .+.||+|+=..+
T Consensus 182 -~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 182 -SLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred -HHHHHHhcccCCCCCEEEECCC
Confidence 22232211 257887665443
No 204
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=61.87 E-value=8.9 Score=41.36 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=59.4
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCccc
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMD 94 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~~ 94 (658)
|.=.+.+--|..+++.+|+-..|...+.+-|-.||+|=..+..+.
T Consensus 32 L~vy~~g~d~d~~~I~~AlsavGGpqT~~ALsvLlafV~~g~~~~----------------------------------- 76 (357)
T PF03216_consen 32 LTVYFFGADTDGKMIKRALSAVGGPQTNQALSVLLAFVTQGTNQD----------------------------------- 76 (357)
T ss_pred EEEEEecCccchHHHHHHHHHcCCchHHHHHHHHHHHHHcCCChh-----------------------------------
Confidence 444567778899999999999999999999999999987653321
Q ss_pred cchhHHHHHHHHhcCCChHHHHHHHHH-hCCCCchHHHHH
Q 006172 95 EGLHIEKRASLLMMNFSVNEVDFALDK-LGKDAPVYELVD 133 (658)
Q Consensus 95 ~s~~~~~~~~lv~MGF~eeev~~Ai~~-~G~d~~i~~L~d 133 (658)
..+-+..-|.+|||..+.+..|-.- -|-.+|..+|++
T Consensus 77 --~~et~~kiL~dmgFkv~~~p~a~~~~agi~~P~~~lA~ 114 (357)
T PF03216_consen 77 --DTETKCKILTDMGFKVTQVPRATPIEAGIMMPMRKLAE 114 (357)
T ss_pred --hhhhHHHHHHHhCceeEecccCCCcccchhchHHHHHH
Confidence 1344667788999999988765321 344444444443
No 205
>PTZ00146 fibrillarin; Provisional
Probab=60.54 E-value=22 Score=38.41 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=46.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+..+.+||||-||.|+++.-+-.. |-. -.|++||+++...+-+...-. ..++...+..|++.- ..+.. ..+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~-G~VyAVD~s~r~~~dLl~~ak--~r~NI~~I~~Da~~p--~~y~~---~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPE-GVVYAVEFSHRSGRDLTNMAK--KRPNIVPIIEDARYP--QKYRM---LVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhh--hcCCCEEEECCccCh--hhhhc---ccC
Confidence 345689999999999998777654 321 258999999754322221100 112233556777632 11111 124
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+.-.
T Consensus 202 ~vDvV~~Dv 210 (293)
T PTZ00146 202 MVDVIFADV 210 (293)
T ss_pred CCCEEEEeC
Confidence 689887665
No 206
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=59.76 E-value=18 Score=36.64 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC-CCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGK-DAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~-d~~i~~L~d~I~ 136 (658)
.++.+..|+.+||++.++.+||++.-. +.++++|+-.-+
T Consensus 143 ~~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lik~AL 182 (188)
T PRK14606 143 YHESLEALVSLGYPEKQAREAVKHVYREGMKTSELIKEAL 182 (188)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 567889999999999999999999854 556666665544
No 207
>PLN02366 spermidine synthase
Probab=59.28 E-value=22 Score=38.40 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+++-+||++=+|.||+...+.+.. .+.-+..||||+...+..+.|+...+ .+...++.+|-.+.- +.. .
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l----~~~--~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL----KNA--P 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH----hhc--c
Confidence 456789999999999887777662 34567889999998888888775421 122234445533211 110 1
Q ss_pred cCCccEEEecC
Q 006172 599 LGSIDFVICQN 609 (658)
Q Consensus 599 ~g~~DLVIGGp 609 (658)
.+.+|+||.-.
T Consensus 163 ~~~yDvIi~D~ 173 (308)
T PLN02366 163 EGTYDAIIVDS 173 (308)
T ss_pred CCCCCEEEEcC
Confidence 24699998743
No 208
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=58.99 E-value=18 Score=36.62 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=31.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~--d~~i~~L~d~I~a 137 (658)
.++.+..|+.+||++.+|.+||.+.-. +.++++|+...+.
T Consensus 147 ~~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~aLk 188 (191)
T TIGR00084 147 RDELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEALK 188 (191)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 467889999999999999999999743 4566777765543
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.97 E-value=21 Score=36.73 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=49.8
Q ss_pred CCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlsl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
|..+.+||||=|=-||-+. +.+.+|=..+ |++||+.|.. ..+|...+.+||+.-+. ++.+....+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~-----------~~~~V~~iq~d~~~~~~--~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMK-----------PIPGVIFLQGDITDEDT--LEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECcccc-----------cCCCceEEeeeccCccH--HHHHHHHcC
Confidence 4568999999999999986 6667774432 7899999874 35566778899976543 233333333
Q ss_pred --CccEEE
Q 006172 601 --SIDFVI 606 (658)
Q Consensus 601 --~~DLVI 606 (658)
.+|+|+
T Consensus 109 ~~~~DvV~ 116 (205)
T COG0293 109 GAPVDVVL 116 (205)
T ss_pred CCCcceEE
Confidence 369888
No 210
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=57.57 E-value=22 Score=32.59 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=37.2
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
++||+-||.|-.++.+.+.|-. ..++++|.++.+...++.++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHH
Confidence 5799999999999999988854 2578999999999988887654
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=57.55 E-value=28 Score=37.69 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhh
Q 006172 519 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 519 K~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~~Ie~l~~ 597 (658)
|.-.+.+-.||+.=-|.|-+++.|-.+|- .|+|||+|+.-..-+++-...+...+.+ ++.+|+-+.+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---------
Confidence 33334456799999999999999999994 5899999999887777765544322222 4556665443
Q ss_pred ccCCccEEEecCCCCCcc
Q 006172 598 KLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ~FS 615 (658)
+.-||++|.--|-|=-|
T Consensus 121 -~P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 121 -LPRFDGCVSNLPYQISS 137 (315)
T ss_pred -CcccceeeccCCccccC
Confidence 34688888877777443
No 212
>PLN03196 MOC1-like protein; Provisional
Probab=57.08 E-value=80 Score=36.38 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=48.9
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCC-------CCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCC
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQ-------DNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQP 86 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge-------~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~ 86 (658)
++++.|-+.||+..-|.++|..+-. .+..-.+++|- .|+-+... .+.... . .+.+-..
T Consensus 126 Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~---~lGvs~~~----i~~~l~----r-~P~LL~~--- 190 (487)
T PLN03196 126 PVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQ---GLDVKRQD----IPRVLE----R-YPELLGF--- 190 (487)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHH---HcCCCHHH----HHHHHH----h-CchhhcC---
Confidence 4789999999999999999998742 23334555553 23311110 000000 0 0000000
Q ss_pred CCCCCccccchhHHHHHHHHhcCCChHHHHHHHHHh
Q 006172 87 KEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKL 122 (658)
Q Consensus 87 ~~e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~ 122 (658)
. . ...-.-++.+|.++|++++++.++|.++
T Consensus 191 ~--~----e~~l~p~v~fL~~lGvs~~~i~~il~~~ 220 (487)
T PLN03196 191 K--L----EGTMSTSVAYLVSIGVAPRDIGPMLTRF 220 (487)
T ss_pred C--H----HHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 0 0 0112346778888899998888888875
No 213
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=56.99 E-value=22 Score=36.28 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhC---CCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLG---KDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G---~d~~i~~L~d~I~a 137 (658)
.++.+..|+.+||++.++.+|+.++- ++.++++|+-.-+.
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 197 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALK 197 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 46788999999999999999999983 34456666665554
No 214
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=56.78 E-value=30 Score=34.31 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=30.7
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
+|||+=||.|++...+-+..-.. .+.++|+++......+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~-~v~gid~s~~~~~~a~~~~ 43 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL-QLHGYTISPEQAEVGRERI 43 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHH
Confidence 58999999999887776543122 3678999998776666544
No 215
>PRK14137 recX recombination regulator RecX; Provisional
Probab=56.47 E-value=1.4e+02 Score=30.52 Aligned_cols=76 Identities=13% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchhhhHH-HHH
Q 006172 100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QLL 178 (658)
Q Consensus 100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m~k~~-~L~ 178 (658)
.....|..-|.+.+.|..||.++..+..++.+. -++. ....+-.. + .....|+. +|.
T Consensus 106 rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~-~l~~----KK~~~~~~-------------~----~~~k~K~~~~L~ 163 (195)
T PRK14137 106 RVRQTLRRRGVEETLIEETLAARDPQEEQQEAR-NLLE----RRWSSFAR-------------K----RDPRASAYAFLA 163 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHH-HHHH----HhccccCc-------------c----hhHHHHHHHHHH
Confidence 456889999999999999999875443322222 2222 22111000 0 01124554 999
Q ss_pred hcCCCHHHHHHHHHhhCCC
Q 006172 179 EMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 179 ~MGf~e~Eas~AI~rcG~d 197 (658)
.-||+-+.+..||..+-..
T Consensus 164 rRGFs~~~I~~al~~~~~~ 182 (195)
T PRK14137 164 RRGFSGAVIWPAIREVAAL 182 (195)
T ss_pred HCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887554
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=56.24 E-value=7.2 Score=41.32 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=60.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH-hhhcCCC-CCccccccccccChhhHHHhhhcc--
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW-WESSGQT-GELVQIEDIQALTTKKFESLIHKL-- 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~-~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~-- 599 (658)
.+-+|||-..|.|=..+..-+.|-. -|..+|.|+.-...-+.| |...-+. ...++.+|+-+ +++.+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------~V~~~~D 203 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------VVKDFDD 203 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH--------HHhcCCc
Confidence 5688999999999888887788863 367899998743221110 1100011 11234455432 33333
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHH
Q 006172 600 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 652 (658)
Q Consensus 600 g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~ 652 (658)
..||.||--|| -||.++. |.. -.+|.|++|||+.
T Consensus 204 ~sfDaIiHDPP--RfS~Age---------------LYs--eefY~El~RiLkr 237 (287)
T COG2521 204 ESFDAIIHDPP--RFSLAGE---------------LYS--EEFYRELYRILKR 237 (287)
T ss_pred cccceEeeCCC--ccchhhh---------------HhH--HHHHHHHHHHcCc
Confidence 46999999999 5775542 222 2378888888763
No 217
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=56.23 E-value=43 Score=36.35 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=30.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 563 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~ 563 (658)
+-+|||+=||.|.+...+...|.. .++++|.++....
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~ 158 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLC 158 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHH
Confidence 468999999999999999888864 5789999986543
No 218
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=54.07 E-value=26 Score=37.88 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=49.1
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-++||.=+|.||.+.++-+..=+--.|+++|+|+.+....+..... .....++.+|..++.. .+. ...+.+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~-~l~---~~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKE-VLA---EGLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHH-HHH---cCCCccCE
Confidence 35799999999999999987641112488999999998877654321 1112245566665531 111 11236888
Q ss_pred EEecC
Q 006172 605 VICQN 609 (658)
Q Consensus 605 VIGGp 609 (658)
|+-=.
T Consensus 94 Il~DL 98 (296)
T PRK00050 94 ILLDL 98 (296)
T ss_pred EEECC
Confidence 76433
No 219
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=51.96 E-value=28 Score=35.14 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
.++.+..|+.+||++.++.+|+.+.. +.++++|+-.-+
T Consensus 142 ~~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eelir~aL 179 (183)
T PRK14601 142 KSEALAALLTLGFKQEKIIKVLASCQ-STGTSELIKEAL 179 (183)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHHHHHH
Confidence 46788999999999999999999984 456666655433
No 220
>PRK04457 spermidine synthase; Provisional
Probab=51.50 E-value=22 Score=37.22 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=48.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+||+|=+|.|.+...+.+.- +-..+.+||+|+...+..+.|+...+ .+...++.+|..+.- .. ..+.+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l----~~---~~~~y 137 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI----AV---HRHST 137 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH----Hh---CCCCC
Confidence 34578999888888877776542 21246889999999998888765322 122334566655331 11 12479
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|+|+-
T Consensus 138 D~I~~ 142 (262)
T PRK04457 138 DVILV 142 (262)
T ss_pred CEEEE
Confidence 99884
No 221
>PRK14136 recX recombination regulator RecX; Provisional
Probab=51.39 E-value=41 Score=36.78 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=50.6
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCc
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNV 92 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~ 92 (658)
-++...|..-|.+.++|..||+++.++..+ ++..|+.=.- ... ..+
T Consensus 229 ~rIrqELrQKGId~eLIEqALeeieEDE~E-~A~~L~eKK~----~~~--------------------------~~d--- 274 (309)
T PRK14136 229 ARIVSELKRHAVGDALVESVGAQLRETEFE-RAQAVWRKKF----GAL--------------------------PQT--- 274 (309)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhccHhHHH-HHHHHHHHHh----ccc--------------------------CcC---
Confidence 457888999999999999999988433323 2222222111 100 000
Q ss_pred cccchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172 93 MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 125 (658)
Q Consensus 93 ~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d 125 (658)
.-..-+.+.+|+.-||+-+.|..+|+.+.++
T Consensus 275 --~kek~K~iRfL~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 275 --PAERAKQARFLAARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred --HHHHHHHHHHHHHCCCCHHHHHHHHHhchhc
Confidence 1124566789999999999999999987654
No 222
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=51.25 E-value=5.6 Score=43.79 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCcccCCCChHHHHHhhh------hhhcccchhhhcccccccC-CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCC
Q 006172 486 NHTQAAGNSLTARLESLR------HCFQTDTLGYHLSVLKSMF-PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 558 (658)
Q Consensus 486 ~~Tr~~~ls~teR~k~Lg------nsfqvdti~~~lsvLK~~f-~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid 558 (658)
||..+-++.+.+|+++-. |+| +=|+|=+.| +.+--+++|=||=||=-+=..+|||. -++.+||.
T Consensus 79 HYN~~~e~g~e~Rq~S~Ii~lRnfNNw-------IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIA 149 (389)
T KOG1975|consen 79 HYNERTEVGREKRQRSPIIFLRNFNNW-------IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIA 149 (389)
T ss_pred HHHHHHHHhHhhhccCceeehhhhhHH-------HHHHHHHHHhccccccceeccCCcccHhHhhhhccc--ceEeeehh
Confidence 666666677777776521 233 234444433 34455789999999999999999996 58899999
Q ss_pred HHHHHHHHHHhhhcCC------CCCccccccccccChhhHHHhhh-ccCCccEEEecCCC
Q 006172 559 ETNRRILKRWWESSGQ------TGELVQIEDIQALTTKKFESLIH-KLGSIDFVICQNSV 611 (658)
Q Consensus 559 ~~a~~t~k~~~~~~n~------~g~l~~~~DI~~Lt~~~Ie~l~~-~~g~~DLVIGGpPC 611 (658)
+...+-.+..+.+..+ ....++.+|-.... |..++. +-..||||.+.+-|
T Consensus 150 evSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~---l~d~~e~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 150 EVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER---LMDLLEFKDPRFDIVSCQFAF 206 (389)
T ss_pred hccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH---HHHhccCCCCCcceeeeeeeE
Confidence 8876654443332111 12234556654433 333332 12349999766643
No 223
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=51.04 E-value=20 Score=41.56 Aligned_cols=59 Identities=31% Similarity=0.327 Sum_probs=40.2
Q ss_pred hhhhcccchhh--hcccccccC--CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH
Q 006172 503 RHCFQTDTLGY--HLSVLKSMF--PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 564 (658)
Q Consensus 503 gnsfqvdti~~--~lsvLK~~f--~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t 564 (658)
+..||+.|.+- +.++..++- +.+-.++|++||.|-+.+++.+- ++-|+.||+++.+..-
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~d 420 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVED 420 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcch
Confidence 44567666443 233333322 44566899999999999999763 3458899999998643
No 224
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=50.88 E-value=31 Score=34.92 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~--d~~i~~L~d~I~ 136 (658)
..+.+..|+..||++.+|.+|+.+++. +.++++++-.-|
T Consensus 148 ~~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~aL 188 (194)
T PRK14605 148 NSDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLAL 188 (194)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 467889999999999999999999974 446666665544
No 225
>PLN03075 nicotianamine synthase; Provisional
Probab=50.73 E-value=84 Score=34.12 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=46.8
Q ss_pred CCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhh-cCC-CCCccccccccccChhhHHHhhhccC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWES-SGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~-~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
.+-+|+++=||.||++.-+-.++ ++--.+..+|+|+.+...-+++... ... ....+..+|+.++.. ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--------~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--------SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------ccC
Confidence 34679999888888765544332 2212477999999998877766532 111 123345566665422 135
Q ss_pred CccEEEec
Q 006172 601 SIDFVICQ 608 (658)
Q Consensus 601 ~~DLVIGG 608 (658)
+||+|+.=
T Consensus 195 ~FDlVF~~ 202 (296)
T PLN03075 195 EYDVVFLA 202 (296)
T ss_pred CcCEEEEe
Confidence 79998743
No 226
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=50.06 E-value=34 Score=37.63 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=45.5
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+||||=||.|.+...+.+. +- ..+.++|+++...+..+...... +..++.+|+.++.- ..+.|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~---~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLK---ECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhcc---CCeEEeccHHhCCC--------CCCce
Confidence 4578999999999988877553 21 24778999998766655433211 12244566654431 12468
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+...
T Consensus 180 DvVIs~~ 186 (340)
T PLN02490 180 DRYVSAG 186 (340)
T ss_pred eEEEEcC
Confidence 8887643
No 227
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=50.03 E-value=34 Score=37.94 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=32.3
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~ 567 (658)
.+.+|||+=||.|++..-+.+ .|.+ |+++|+++......+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~---V~giDlS~~~l~~A~~ 208 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVS---VVGVTISAEQQKLAQE 208 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCE---EEEEeCCHHHHHHHHH
Confidence 457899999999999876665 4653 6889999988776654
No 228
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=49.55 E-value=37 Score=38.10 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=32.0
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~ 567 (658)
.+.+|||+=||.|++...|... |. .++++|+++.+....+.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~ 307 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALE 307 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence 4678999999999988777653 54 37899999988766554
No 229
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.44 E-value=41 Score=35.47 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCCCcccccCCCCChHHHHHH--HcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc--
Q 006172 523 PGGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK-- 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~--~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~-- 598 (658)
++..-.|-.|+|.+-+.+|+. .-| .++++|||+.+-++....|... |+...+.=|..-.-+.|.+++.+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dG----rv~a~eid~~~~~~~~~~~k~a---gv~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDG----RVVAIEIDADAYEIGLELVKLA---GVDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCc----eEEEEecChHHHHHhHHHHHhc---cccceeeeeecchhhhHHHHHhcCC
Confidence 343444566999999988886 444 3789999999988776666533 33322223344445566666654
Q ss_pred cCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhc
Q 006172 599 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 655 (658)
Q Consensus 599 ~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~ 655 (658)
.+.||++. . + .|+++.. ..|.|.|+.+|+
T Consensus 147 ~~tfDfaF----------v---------------D--adK~nY~-~y~e~~l~Llr~ 175 (237)
T KOG1663|consen 147 SGTFDFAF----------V---------------D--ADKDNYS-NYYERLLRLLRV 175 (237)
T ss_pred CCceeEEE----------E---------------c--cchHHHH-HHHHHHHhhccc
Confidence 45666653 0 1 2455554 777788887764
No 230
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=48.28 E-value=22 Score=37.85 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL 122 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~ 122 (658)
...++..|..+||++++|.+++.++
T Consensus 243 l~~~i~~L~~lG~s~~ei~~mv~~~ 267 (345)
T PF02536_consen 243 LKPKIEFLQSLGFSEEEIAKMVRRF 267 (345)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHhC
Confidence 5678899999999999999999985
No 231
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=47.74 E-value=37 Score=38.21 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+..+||+=||.|.+.+.+-+.. +-..++++|+++.........-...+-....++.+|+..+.. .+ ..+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~-----~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL-----PSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC-----CCCcee
Confidence 35679999999999998888774 224688999998776555443222222222244566654321 11 236799
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
.|.--+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 998878764
No 232
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=47.58 E-value=48 Score=37.12 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=80.3
Q ss_pred hHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCcee----e
Q 006172 476 HIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLK----G 551 (658)
Q Consensus 476 E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k----~ 551 (658)
.++++-+|=..-|-+++|.+.+-...| ++++= + ...+-+|||+.|--||=++.|.++.+. . .
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSml------PvL~L------~-v~p~~~VLDmCAAPG~Kt~qLLeal~~-~~~~g~ 185 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSML------PVLAL------G-VKPGDKVLDMCAAPGGKTAQLLEALHK-DPTRGY 185 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhcc------chhhc------c-cCCCCeeeeeccCCCccHHHHHHHHhc-CCCCCe
Confidence 566777777777888888877766333 22221 1 123578999999999999999988863 2 5
Q ss_pred EEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh-hhccCCccEEEecCCCCCccc
Q 006172 552 VISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL-IHKLGSIDFVICQNSVPQIPN 616 (658)
Q Consensus 552 vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l-~~~~g~~DLVIGGpPCQ~FS~ 616 (658)
++++|+|+.-.+.+.+--...+.+...+...|++......+... -..+-.||=|..--||.+=+.
T Consensus 186 vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 186 VVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred eEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCcc
Confidence 78999999876666542222233333344555554443322100 012246899999999998753
No 233
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=46.93 E-value=51 Score=30.23 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=42.5
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCC-HHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDN-VDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d-~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
-.++..|..-|.+.+.|..|++ +.+ .+.+++++..--. ..... .
T Consensus 46 ~~I~~~L~~kGi~~~~i~~~l~---~~~~~e~a~~~~~kk~~-~~~~~------------------------------~- 90 (121)
T PF02631_consen 46 RRIRQKLKQKGIDREIIEEALE---EYDEEEEALELAEKKYR-RYRKP------------------------------S- 90 (121)
T ss_dssp HHHHHHHHHTT--HHHHHHHHT---CS-HHHHHHHHHHHHHH-HTTTS--------------------------------
T ss_pred HHHHHHHHHHCCChHHHHHHHH---HhhHHHHHHHHHHHHHh-cccCC------------------------------C-
Confidence 3477888888999999999998 333 3333333333111 10000 0
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHH
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDK 121 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~ 121 (658)
+.-...+.+..|+.-||+.+.|..||.+
T Consensus 91 --~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 91 --DRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp --CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred --CHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 0123667789999999999999999988
No 234
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=45.54 E-value=49 Score=35.10 Aligned_cols=43 Identities=23% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~ 568 (658)
..|.+|||+=||-||+.+-+.+. |.+ |.++.+++.-..-.+..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~ 104 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARER 104 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHH
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHH
Confidence 46789999999999999877766 875 67889998866555543
No 235
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=44.86 E-value=47 Score=35.35 Aligned_cols=87 Identities=10% Similarity=-0.049 Sum_probs=51.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhcc-
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKL- 599 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~--l~~~~DI~~Lt~~~Ie~l~~~~- 599 (658)
+.+.+||||=||.|-.+..|-+++.+...++++|+++......+...... .++. ..+.+|+.+.. . +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~--~---~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPL--A---LPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchh--h---hhcccc
Confidence 34578999999999999988877431124789999998654443322111 1221 12467776421 1 11111
Q ss_pred -CCccEEEecCCCCCcc
Q 006172 600 -GSIDFVICQNSVPQIP 615 (658)
Q Consensus 600 -g~~DLVIGGpPCQ~FS 615 (658)
+...+++-|+++..|+
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 2455677777777776
No 236
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=44.33 E-value=20 Score=39.82 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGK 124 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~ 124 (658)
.+++++.++.|||+.|-|.-.|.|+=+
T Consensus 321 ~ddvidKv~~MGf~rDqV~a~v~rl~E 347 (358)
T PF07223_consen 321 YDDVIDKVASMGFRRDQVRATVRRLTE 347 (358)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 678999999999999999988887543
No 237
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=43.88 E-value=76 Score=31.07 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChh-hHHHhhhccC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTK-KFESLIHKLG 600 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~-~Ie~l~~~~g 600 (658)
.+.+||+|=||+|=..+.+..+ |- ..|+.-|.++ +...++.+-..++. .... -.+..++=. .+........
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~---v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDGR---VSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred CCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHHhcccccccc---ccCcEEEecCcccccccccc
Confidence 5679999999999888888888 43 3577789999 77777776433210 1111 123333211 1111111235
Q ss_pred CccEEEecCC
Q 006172 601 SIDFVICQNS 610 (658)
Q Consensus 601 ~~DLVIGGpP 610 (658)
.||+|+|.==
T Consensus 119 ~~D~IlasDv 128 (173)
T PF10294_consen 119 SFDVILASDV 128 (173)
T ss_dssp SBSEEEEES-
T ss_pred cCCEEEEecc
Confidence 7999998753
No 238
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=43.41 E-value=25 Score=35.47 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=28.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGSKTPISELAD 205 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~da~i~eL~D 205 (658)
+-...|+.+||+..||..|+.+..++.++++++-
T Consensus 147 e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir 180 (186)
T PRK14600 147 DALAALISLGYEKTKAFNAIQKIKPNLSTQDIIR 180 (186)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHH
Confidence 3446999999999999999999987778887754
No 239
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=42.88 E-value=48 Score=37.16 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=34.4
Q ss_pred CCcccccCCCCC--hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 525 GLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 525 ~l~vLdLFSGiG--GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
..+|+|-|||.| |..++.+- |. ..++.+||+|.|.++.+.|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~--~~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GV--VKVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Cc--cEEEEccCCHHHHHHHHHHHH
Confidence 588999999888 88887664 33 257889999999999988654
No 240
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=42.75 E-value=47 Score=33.80 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCC--CCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~--d~~i~~L~d~I~ 136 (658)
.++.+..|+.+||++.++.+||.++-. +.++++++-.-|
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~ir~aL 189 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAALPSDAPPDLEERLRLAL 189 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 467889999999999999999999832 345566655444
No 241
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=41.35 E-value=7.9 Score=43.83 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=51.9
Q ss_pred CCccc-cccccccchhhHHHHhhhhcc-CCceeecccccc-----cccccccccccCCCCCCcCCCCCCCCcccccccCC
Q 006172 331 PPYFF-YGNVVDVSIDCWVKMSHFLYS-LEPEFVNSQYFS-----ALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHT 403 (658)
Q Consensus 331 ppfF~-feNV~~~~~~~w~~is~fL~~-~~Pe~vds~~fs-----aa~R~r~y~hNLP~~~R~~~~p~~p~ti~e~lp~~ 403 (658)
|-|++ =||=--+|...=..+.+-|.+ +.=.+++|-|+. |+.+++.||-|||..-. -=|.+|-.|-
T Consensus 332 pvy~~a~~~DhI~P~~Sv~~g~~l~~g~~~f~l~~sGHIa~vVN~p~~~k~~~w~n~~~~~~--------~Wl~~a~~~~ 403 (445)
T COG3243 332 PVYNLAAEEDHIAPWSSVYLGARLLGGEVTFVLSRSGHIAGVVNPPGNAKYQYWTNLPADAE--------AWLSGAKEHP 403 (445)
T ss_pred ceEEEeecccccCCHHHHHHHHHhcCCceEEEEecCceEEEEeCCcchhhhhcCCCCcchHH--------HHHHhhccCC
Confidence 44444 466666777777788888876 444566777764 68999999999766522 1145566788
Q ss_pred CccCCCcCC
Q 006172 404 KKWWPSWDT 412 (658)
Q Consensus 404 ~~~wp~wd~ 412 (658)
-+|||.|+.
T Consensus 404 gsww~~w~~ 412 (445)
T COG3243 404 GSWWPHWQQ 412 (445)
T ss_pred CccccchHH
Confidence 899999986
No 242
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=41.22 E-value=40 Score=34.82 Aligned_cols=80 Identities=19% Similarity=0.174 Sum_probs=51.3
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCCcc
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
-+||||=||-|-+-..|++-||+-+ ++.||.++.|...-+ +-...++-. ..++..||.+= +. ..+.||
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~--~~------~~~qfd 138 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDP--DF------LSGQFD 138 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCC--cc------ccccee
Confidence 4899999999999999999999743 789999999876533 222222222 22445666532 11 236788
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
||.-=----..|
T Consensus 139 lvlDKGT~DAis 150 (227)
T KOG1271|consen 139 LVLDKGTLDAIS 150 (227)
T ss_pred EEeecCceeeee
Confidence 876433333334
No 243
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=40.44 E-value=15 Score=43.72 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=24.4
Q ss_pred cCCCCccccccccccchhhHHHHhhhhc
Q 006172 328 VAQPPYFFYGNVVDVSIDCWVKMSHFLY 355 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~~~w~~is~fL~ 355 (658)
....||+.||-=.-=|...|+.||.++.
T Consensus 423 ~~r~~f~IfEDGRPWP~egWE~~StYr~ 450 (811)
T PF14872_consen 423 ARRLPFTIFEDGRPWPQEGWEEISTYRD 450 (811)
T ss_pred cceeEEEEecCCCcCCccchHHHHHHHH
Confidence 3456899999999999999999999874
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=39.46 E-value=53 Score=36.61 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 563 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~ 563 (658)
+..+.++|||=|+.||.+.-|.+.|.. |++||..+.+-.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~ 247 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQS 247 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHh
Confidence 456789999999999999999999984 789998876543
No 245
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=39.34 E-value=42 Score=35.66 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCCCC-hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEE
Q 006172 532 FSGIG-GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVI 606 (658)
Q Consensus 532 FSGiG-GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~----~~~g~~DLVI 606 (658)
++||| -++.+|-..|+..-++...+-++.+..-|+. ..+.....++.-||++ ..+++... ..+|.+|++|
T Consensus 14 agGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~a---i~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDIlI 88 (261)
T KOG4169|consen 14 AGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQA---INPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDILI 88 (261)
T ss_pred CchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhc---cCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEEEE
Confidence 34444 2356777889864333333333444444443 3334455567788887 45555443 3579999999
Q ss_pred ecC
Q 006172 607 CQN 609 (658)
Q Consensus 607 GGp 609 (658)
-|.
T Consensus 89 NgA 91 (261)
T KOG4169|consen 89 NGA 91 (261)
T ss_pred ccc
Confidence 765
No 246
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=39.02 E-value=46 Score=34.34 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 605 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 605 (658)
-++|++=||+|-++..|.... .-+.++|+++.|...-+..-. ..+...++..||....+ .+.||||
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P---------~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP---------EGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT------------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC---------CCCeeEE
Confidence 358999999999999987654 568899999999877665322 22333345666654332 2578888
Q ss_pred Eec
Q 006172 606 ICQ 608 (658)
Q Consensus 606 IGG 608 (658)
+-.
T Consensus 111 V~S 113 (201)
T PF05401_consen 111 VLS 113 (201)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 247
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=36.82 E-value=1e+02 Score=34.25 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=62.7
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhhcccc--------h-------hhhcccccccCCCCCcccccCCCC--
Q 006172 474 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT--------L-------GYHLSVLKSMFPGGLTMLSVFSGI-- 535 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr~~~ls~t-eR~k~Lgnsfqvdt--------i-------~~~lsvLK~~f~~~l~vLdLFSGi-- 535 (658)
...||+-||-|.-+....++..+ +.++.|...+..+. + ..-+...+.++. +.+|. ++.+.
T Consensus 221 a~~L~~~fGip~~~~~p~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~-gkrv~-i~~~~~~ 298 (410)
T cd01968 221 ARKMEEKYGIPYIEVSFYGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLE-GKKAA-LYTGGVK 298 (410)
T ss_pred HHHHHHHhCCCeEecCcCcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEE-EEcCCch
Confidence 67778888888766554555555 34555555554321 1 111222222232 34442 34332
Q ss_pred -ChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172 536 -GGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 536 -GGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
-++...|+.+|+++..+..-..++...+-++... +...++. .+.+..++...+.. .++||++|++=..
T Consensus 299 ~~~la~~l~elGm~v~~~~~~~~~~~~~~~~~~~~-----~~~~~v~---~~~~~~e~~~~i~~-~~pDl~ig~s~~~ 367 (410)
T cd01968 299 SWSLVSALQDLGMEVVATGTQKGTKEDYERIKELL-----GEGTVIV---DDANPRELKKLLKE-KKADLLVAGGKER 367 (410)
T ss_pred HHHHHHHHHHCCCEEEEEecccCCHHHHHHHHHHh-----CCCcEEE---eCCCHHHHHHHHhh-cCCCEEEECCcch
Confidence 3566778899998655443344433222222211 1111222 23444455444432 3699999985443
No 248
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=36.10 E-value=82 Score=32.51 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=38.9
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 519 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 519 K~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
+.+-..+-.|+|-|+|.|-..++..++|-. .+.+|+++........-|.
T Consensus 217 ~~~s~~~diVlDpf~GsGtt~~aa~~~~r~---~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 217 RDYSFPGDIVLDPFAGSGTTGIAAKNLGRR---FIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred HhcCCCCCEEeecCCCCChHHHHHHHcCCc---eEEEecCHHHHHHHHHHHH
Confidence 333445678999999999999999999964 5679999998877665554
No 249
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=35.33 E-value=30 Score=39.51 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=38.3
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHH
Q 006172 521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~ 568 (658)
+|.-|-.|-|+|||+|=+++-+-.-| ..|++.|.++...+.|+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKAN 290 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHh
Confidence 57777889999999999988777777 3589999999999988864
No 250
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=34.24 E-value=69 Score=32.25 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=31.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCC-CchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKD-APVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d-~~i~~L~d~I~ 136 (658)
..+.+..|..+||++.++.+|+.+.+.+ ..+++++...+
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~aL 188 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKEAASVEELIREAL 188 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4678899999999999999999999874 35566665443
No 251
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=33.94 E-value=63 Score=30.89 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=23.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCc
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAP 127 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~ 127 (658)
.++|+.+|..-|.+++||..|+.+.|...+
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 788999999999999999999999998763
No 252
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=33.92 E-value=46 Score=33.87 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC---CCCChhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFG---SKTPISELA 204 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG---~da~i~eL~ 204 (658)
+-...|+.+||+..||..||.++- ++.++++++
T Consensus 154 ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~li 189 (197)
T PRK14603 154 DAVLALLALGFREAQVRSVVAELLAQNPEASAQTLI 189 (197)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 344589999999999999999983 344555554
No 253
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=33.80 E-value=1.1e+02 Score=33.27 Aligned_cols=65 Identities=20% Similarity=0.389 Sum_probs=40.6
Q ss_pred CCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 006172 522 FPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT 589 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlsl-GL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~ 589 (658)
...|++|||+=||-||+.+ +.++-|.+ |+++.+++.-..-.+.-....+-. ...+...|.+++..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 3568999999999999874 44444754 688999998766555432222211 12244556555543
No 254
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=34 Score=36.81 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=30.8
Q ss_pred hhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172 17 SSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 49 (658)
Q Consensus 17 ~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL 49 (658)
+.++.||||...+.+|+--+|..+.+.+++-|-
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~ 37 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLE 37 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHHH
Confidence 789999999999999999999999999999883
No 255
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=32.49 E-value=78 Score=27.21 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.7
Q ss_pred hhhhhccCCCCHHHHHHHHHHh----C-------CCCHHHHHHHHHHHhh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEK----G-------QDNVDLLLETLIEYNA 53 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~----G-------e~d~d~iLE~LLty~a 53 (658)
.++++-.|||+.+.|.-+|+++ | +++-..|++.||..++
T Consensus 14 A~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 14 ALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 6789999999999999998876 3 3455567777776553
No 256
>PRK01581 speE spermidine synthase; Validated
Probab=31.82 E-value=1.1e+02 Score=34.48 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=47.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh-----hhc--CCCCCccccccccccChhhHHHh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW-----ESS--GQTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~-----~~~--n~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
++.-+||.+=+|.|++...+-+.. .+..+..||||+...++.+.+. ... ..+...++++|..+.- .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL----~-- 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL----S-- 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH----H--
Confidence 455689999888777655555433 3456889999999887776521 111 1122223455554321 1
Q ss_pred hhccCCccEEEecCC
Q 006172 596 IHKLGSIDFVICQNS 610 (658)
Q Consensus 596 ~~~~g~~DLVIGGpP 610 (658)
...+.+|+|+.-.|
T Consensus 222 -~~~~~YDVIIvDl~ 235 (374)
T PRK01581 222 -SPSSLYDVIIIDFP 235 (374)
T ss_pred -hcCCCccEEEEcCC
Confidence 12357999998754
No 257
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=31.74 E-value=53 Score=33.59 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=25.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhC---CCCChhhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFG---SKTPISELAD 205 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG---~da~i~eL~D 205 (658)
+-...|+.+||+..||..|+.++- ++.++++|+-
T Consensus 157 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 193 (203)
T PRK14602 157 DALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALR 193 (203)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 445689999999999999999983 3455655543
No 258
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=31.73 E-value=75 Score=34.11 Aligned_cols=77 Identities=25% Similarity=0.086 Sum_probs=48.1
Q ss_pred hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEE
Q 006172 474 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVI 553 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vv 553 (658)
.|.+--++|...=| =+|..+=+++|...-...+ + .-+..++|||=||.|+.+.-+..+ ++-|+
T Consensus 58 ~T~iNG~LgRG~MF----vfS~~Q~~~LL~~~~~~~~---------~-~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~ 120 (265)
T PF05219_consen 58 KTDINGILGRGSMF----VFSEEQFRKLLRISGFSWN---------P-DWKDKSLLDLGAGDGEVTERLAPL---FKEVY 120 (265)
T ss_pred HHhHhhhhcCCcEE----EecHHHHHHHhhhhccCCC---------C-cccCCceEEecCCCcHHHHHHHhh---cceEE
Confidence 45555555543322 3455566666654321100 1 013468999999999998888553 46789
Q ss_pred EeeCCHHHHHHHHH
Q 006172 554 SIETSETNRRILKR 567 (658)
Q Consensus 554 avEid~~a~~t~k~ 567 (658)
+-|+++.-|..++.
T Consensus 121 aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 121 ATEASPPMRWRLSK 134 (265)
T ss_pred eecCCHHHHHHHHh
Confidence 99999998777753
No 259
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=31.50 E-value=48 Score=33.54 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=26.1
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCC-CCChhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGS-KTPISELA 204 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~-da~i~eL~ 204 (658)
+-...|+.+||+..||..||.+.-. +.++++|+
T Consensus 145 e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 178 (188)
T PRK14606 145 ESLEALVSLGYPEKQAREAVKHVYREGMKTSELI 178 (188)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHH
Confidence 3446899999999999999999854 55666654
No 260
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=30.92 E-value=68 Score=33.00 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=26.8
Q ss_pred HHHHHhcCCChHHHHHHHHHhCC---CCchHHHHHHH
Q 006172 102 RASLLMMNFSVNEVDFALDKLGK---DAPVYELVDFI 135 (658)
Q Consensus 102 ~~~lv~MGF~eeev~~Ai~~~G~---d~~i~~L~d~I 135 (658)
+..|+.+||++.|+.+|+...-. +.++++++-.-
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik~a 196 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIKEA 196 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 78999999999999999998654 45556665443
No 261
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=30.66 E-value=69 Score=34.41 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=56.1
Q ss_pred hcccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC----CCCcccc
Q 006172 506 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQI 581 (658)
Q Consensus 506 fqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~----~g~l~~~ 581 (658)
|.-..+..|.-.+.---| -+||=+=-|.||+..-+.+..- ++-++.||||+.-...-+.|+....+ +-..+++
T Consensus 60 ~~yhEml~h~~~~ah~~p--k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i 136 (282)
T COG0421 60 FIYHEMLAHVPLLAHPNP--KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHHhchhhhCCCC--CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEe
Confidence 344445555555443333 3677777788888777777663 57788999999999988888765421 1222344
Q ss_pred ccccccChhhHHHhhhcc-CCccEEEe
Q 006172 582 EDIQALTTKKFESLIHKL-GSIDFVIC 607 (658)
Q Consensus 582 ~DI~~Lt~~~Ie~l~~~~-g~~DLVIG 607 (658)
+|.. +++... ..||+||-
T Consensus 137 ~Dg~--------~~v~~~~~~fDvIi~ 155 (282)
T COG0421 137 DDGV--------EFLRDCEEKFDVIIV 155 (282)
T ss_pred ccHH--------HHHHhCCCcCCEEEE
Confidence 4443 233333 36998773
No 262
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=30.34 E-value=2.1e+02 Score=32.34 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=64.8
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhhcccc------------hhhhcccc---cccCCCCCcccccCCCCC-
Q 006172 474 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCFQTDT------------LGYHLSVL---KSMFPGGLTMLSVFSGIG- 536 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr~~~ls~t-eR~k~Lgnsfqvdt------------i~~~lsvL---K~~f~~~l~vLdLFSGiG- 536 (658)
...||+-||-|.-.....++..| +.++.|+..+..+. .+.....| +..+ .+.+|. +|.|..
T Consensus 260 a~~L~e~~GiP~~~~~~~G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L-~Gkrv~-i~~g~~~ 337 (456)
T TIGR01283 260 ARKMEEKYGIPYFEGSFYGIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERL-KGKKAA-IYTGGVK 337 (456)
T ss_pred HHHHHHHcCCCEEecCCCcHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEE-EEcCCch
Confidence 67788888888765554566655 45566666554321 01111122 2222 244442 344421
Q ss_pred --hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172 537 --GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 537 --GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
++...|..+|+++..+..-...+.....++.. .....++.. +-+..++...+.+ .++||++|++....+
T Consensus 338 ~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~-----~~~~~~v~~---~~d~~e~~~~i~~-~~pDl~ig~~~~~~~ 408 (456)
T TIGR01283 338 SWSLVSALQDLGMEVVATGTQKGTEEDYARIREL-----MGEGTVMLD---DANPRELLKLLLE-YKADLLIAGGKERYT 408 (456)
T ss_pred HHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHH-----cCCCeEEEe---CCCHHHHHHHHhh-cCCCEEEEccchHHH
Confidence 34456688999864443334444332233221 111112222 2344455554433 369999998776555
Q ss_pred c
Q 006172 615 P 615 (658)
Q Consensus 615 S 615 (658)
+
T Consensus 409 a 409 (456)
T TIGR01283 409 A 409 (456)
T ss_pred H
Confidence 4
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=29.54 E-value=1.4e+02 Score=34.41 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred CCCcccccCCCCChHHHH----HHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVT----LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslG----L~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.++||+.|--||=+.- ++.-| +++|.|.+..-.+.++.+......+++++.+.|..++..+.+ .
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~------~ 310 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF------P 310 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc------C
Confidence 578999999999996533 34556 489999999999999998887777888888888887765442 1
Q ss_pred CCccEEEecCCCCCcccC
Q 006172 600 GSIDFVICQNSVPQIPNS 617 (658)
Q Consensus 600 g~~DLVIGGpPCQ~FS~a 617 (658)
+.||=|.=-.||.+....
T Consensus 311 ~~fDRVLLDAPCSGtgvi 328 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVI 328 (460)
T ss_pred cccceeeecCCCCCCccc
Confidence 369988889999996543
No 264
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=29.32 E-value=58 Score=33.03 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=26.7
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhh
Q 006172 173 ITLQLLEMGFSENQVSLAIEKFGS--KTPISELAD 205 (658)
Q Consensus 173 k~~~L~~MGf~e~Eas~AI~rcG~--da~i~eL~D 205 (658)
-...|+..||+..||..|+.+++. +.++++++-
T Consensus 151 ~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir 185 (194)
T PRK14605 151 ILATLTALGYSSSEAAKAISSLGDNGDLPLEERIK 185 (194)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHH
Confidence 345899999999999999999985 556666543
No 265
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.26 E-value=52 Score=33.68 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=23.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKD 125 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d 125 (658)
..+++..|..|||+++++..|+.+.+-+
T Consensus 162 ~~~~v~~l~~mGf~~~~~i~~L~~~~w~ 189 (200)
T KOG0418|consen 162 DKKKVDSLIEMGFSELEAILVLSGSDWN 189 (200)
T ss_pred hHHHHHHHHHhcccHHHHHHHhhccccc
Confidence 5578999999999999999988876554
No 266
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=27.59 E-value=2.4e+02 Score=32.35 Aligned_cols=128 Identities=14% Similarity=0.225 Sum_probs=65.5
Q ss_pred hhhHHHHhcCCCCCcccCCCChH-HHHHhhhhhh---cccc----------------hhhhcccccccCCCCCcccccCC
Q 006172 474 PEHIELILGYPSNHTQAAGNSLT-ARLESLRHCF---QTDT----------------LGYHLSVLKSMFPGGLTMLSVFS 533 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr~~~ls~t-eR~k~Lgnsf---qvdt----------------i~~~lsvLK~~f~~~l~vLdLFS 533 (658)
...||+-||-|--+....++..| ..++.|...+ ..+. +...+...+.++.. .+| -+|.
T Consensus 254 A~~L~erfGiP~~~~~p~G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~G-k~v-aI~~ 331 (475)
T PRK14478 254 ARKMEERYGIPFFEGSFYGIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEG-KRV-LLYT 331 (475)
T ss_pred HHHHHHHhCCCEEecCCCcHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CEE-EEEc
Confidence 67788888888766554466665 3455555555 1211 11112223333433 333 1233
Q ss_pred CCC---hHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172 534 GIG---GAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 610 (658)
Q Consensus 534 GiG---GlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 610 (658)
|.. ++...|..+|+++..++.-...+...+.++... ... .++..| .+..++.+.+.+ .++||++|++-
T Consensus 332 ~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~----~~~-~~v~~d---~~~~e~~~~i~~-~~pDliig~s~ 402 (475)
T PRK14478 332 GGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM----GPD-AHMIDD---ANPRELYKMLKE-AKADIMLSGGR 402 (475)
T ss_pred CCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc----CCC-cEEEeC---CCHHHHHHHHhh-cCCCEEEecCc
Confidence 321 445567899998866655555554333443221 112 223333 344555544433 46999999865
Q ss_pred CC
Q 006172 611 VP 612 (658)
Q Consensus 611 CQ 612 (658)
-.
T Consensus 403 ~~ 404 (475)
T PRK14478 403 SQ 404 (475)
T ss_pred hh
Confidence 43
No 267
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=27.35 E-value=63 Score=32.65 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.4
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGSKTPISELA 204 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~da~i~eL~ 204 (658)
+-...|+.+||+..||..|+.+.- +.++++++
T Consensus 144 ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eeli 175 (183)
T PRK14601 144 EALAALLTLGFKQEKIIKVLASCQ-STGTSELI 175 (183)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHH
Confidence 445699999999999999999983 55666553
No 268
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.12 E-value=85 Score=33.55 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHhhhhhhcccchhhhcccccccCCCCCcccccCCCCChHHHHHHH-cC-------CceeeEEEeeCCHHHHHHHHHH
Q 006172 497 ARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LG-------IKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 497 eR~k~Lgnsfqvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aG-------i~~k~vvavEid~~a~~t~k~~ 568 (658)
+|-++-.+-.|.|....+|.= --+|+||.+--|.-+.-|.+ +. -.=+.++|||+-+-+
T Consensus 21 wRARSAFKLlqideef~i~~g-------v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------- 86 (294)
T KOG1099|consen 21 WRARSAFKLLQIDEEFQIFEG-------VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------- 86 (294)
T ss_pred chHHhHHHHhhhhhhhhHHhh-------hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------
Confidence 344444555577766554433 35799999999998877653 22 111237899987764
Q ss_pred hhhcCCCCCccccccccccChhhHHHhhhcc--CCccEEEe-cCC
Q 006172 569 WESSGQTGELVQIEDIQALTTKKFESLIHKL--GSIDFVIC-QNS 610 (658)
Q Consensus 569 ~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~--g~~DLVIG-GpP 610 (658)
.-.|..-+.+||++.+.. +.++..| .+.||||+ |.|
T Consensus 87 ----PI~GV~qlq~DIT~~sta--e~Ii~hfggekAdlVvcDGAP 125 (294)
T KOG1099|consen 87 ----PIEGVIQLQGDITSASTA--EAIIEHFGGEKADLVVCDGAP 125 (294)
T ss_pred ----ccCceEEeecccCCHhHH--HHHHHHhCCCCccEEEeCCCC
Confidence 355776778999988764 3344444 36898773 444
No 269
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=24.86 E-value=79 Score=34.96 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=31.0
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
++....+..++.|||..++|..|+.-- -.++ +--||+|+..
T Consensus 133 ~~~e~~V~~Im~MGy~re~V~~AlRAa-fNNP-eRAVEYLl~G 173 (340)
T KOG0011|consen 133 SEYEQTVQQIMEMGYDREEVERALRAA-FNNP-ERAVEYLLNG 173 (340)
T ss_pred chhHHHHHHHHHhCccHHHHHHHHHHh-hCCh-hhhHHHHhcC
Confidence 457788899999999999999999872 2233 5557777754
No 270
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=24.59 E-value=1.4e+02 Score=33.70 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=36.1
Q ss_pred hhhhcccccc--cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH
Q 006172 511 LGYHLSVLKS--MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 563 (658)
Q Consensus 511 i~~~lsvLK~--~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~ 563 (658)
-.|+-.+|.+ -|..+ .|||.=||.|=++.=...||-+ -|++||-++-|..
T Consensus 163 gTY~~Ail~N~sDF~~k-iVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqy 214 (517)
T KOG1500|consen 163 GTYQRAILENHSDFQDK-IVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQY 214 (517)
T ss_pred hHHHHHHHhcccccCCc-EEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHH
Confidence 3444445544 34443 4899999999999988999984 5889998877643
No 271
>PRK14137 recX recombination regulator RecX; Provisional
Probab=24.46 E-value=2.3e+02 Score=28.94 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=49.3
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCC-HHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCc
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDN-VDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNV 92 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d-~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~ 92 (658)
.+...|..-|.+.++|..||.+.-+++ .+.+.+++-.. ..+. ....
T Consensus 106 rI~~eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~KK-----~~~~--------------------------~~~~-- 152 (195)
T PRK14137 106 RVRQTLRRRGVEETLIEETLAARDPQEEQQEARNLLERR-----WSSF--------------------------ARKR-- 152 (195)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHHHh-----cccc--------------------------Ccch--
Confidence 478889999999999999999874433 23333333221 1100 0000
Q ss_pred cccchhHHHHHHHHhcCCChHHHHHHHHHhCC
Q 006172 93 MDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 124 (658)
Q Consensus 93 ~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~ 124 (658)
....+.+.+|+.-||+-+.|..||.++-.
T Consensus 153 ---~~k~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 153 ---DPRASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred ---hHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 11456778999999999999999988543
No 272
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=24.43 E-value=68 Score=33.01 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=25.6
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCC---CCChhhhh
Q 006172 174 TLQLLEMGFSENQVSLAIEKFGS---KTPISELA 204 (658)
Q Consensus 174 ~~~L~~MGf~e~Eas~AI~rcG~---da~i~eL~ 204 (658)
...|+.+||++.|+..|+...-. +++++++.
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~I 193 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELI 193 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 67999999999999999988775 56666654
No 273
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=24.34 E-value=1.9e+02 Score=24.91 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh----C------CCCchHHHHHHHHHHhh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL----G------KDAPVYELVDFITAAQI 140 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~----G------~d~~i~~L~d~I~a~q~ 140 (658)
.+.-+.++..|||+++.|.-.|.++ | ++++-..|+|.|+..|.
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 5667788999999999999998885 3 23444568888887764
No 274
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=24.06 E-value=28 Score=40.90 Aligned_cols=37 Identities=27% Similarity=0.634 Sum_probs=25.5
Q ss_pred cccccccccccCCCCCCcCCCCCCCCc-ccccccCCCccCCCcCC
Q 006172 369 ALSRREGYLHNLPTTNRFHIPPEPPMT-IQDAIPHTKKWWPSWDT 412 (658)
Q Consensus 369 aa~R~r~y~hNLP~~~R~~~~p~~p~t-i~e~lp~~~~~wp~wd~ 412 (658)
|.+-||+||.|=. +|..|-. +..|=.+.-+|||.|..
T Consensus 488 P~~~k~~y~~~~~-------~~~~~~~W~~~a~~~~GSWW~~W~~ 525 (560)
T TIGR01839 488 PGNPKARYMTNAK-------LSSDPRAWQEDAKRHEGSWWPHWLS 525 (560)
T ss_pred CCCCCCceeeCCC-------CCCCHHHHHhcCCcCCCCchHhHHH
Confidence 6778999999841 2232333 55566788899999865
No 275
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=23.97 E-value=28 Score=40.56 Aligned_cols=38 Identities=26% Similarity=0.674 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCCCcCCCCCCCCc-ccccccCCCccCCCcCC
Q 006172 368 SALSRREGYLHNLPTTNRFHIPPEPPMT-IQDAIPHTKKWWPSWDT 412 (658)
Q Consensus 368 saa~R~r~y~hNLP~~~R~~~~p~~p~t-i~e~lp~~~~~wp~wd~ 412 (658)
.+.+-||+||.| . . +|..|-+ +..|-.+.-+|||.|..
T Consensus 461 Pp~~~k~~y~~~--~-~----~~~~~~~w~~~a~~~~gSWW~~w~~ 499 (532)
T TIGR01838 461 PPSKNKYGHWTN--A-A----LPADPEVWLAGATEHPGSWWPDWAA 499 (532)
T ss_pred CCCCCCCceeeC--C-C----CCCCHHHHHhcCCcCCCCchHhHHH
Confidence 357789999998 1 1 2232333 55566788899998864
No 276
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=23.81 E-value=74 Score=32.19 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=26.5
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhCC--CCChhhhhhh
Q 006172 173 ITLQLLEMGFSENQVSLAIEKFGS--KTPISELADK 206 (658)
Q Consensus 173 k~~~L~~MGf~e~Eas~AI~rcG~--da~i~eL~D~ 206 (658)
=...|+.+||+..||..||.+.-. +.++++++..
T Consensus 150 ~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~ 185 (191)
T TIGR00084 150 LFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEE 185 (191)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 345899999999999999999843 5677766543
No 277
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=23.20 E-value=74 Score=35.18 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.2
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
-+...+.||+.+|-|.+|+.--= +|.|.-|||||+-
T Consensus 138 ~V~~Im~MGy~re~V~~AlRAaf-NNPeRAVEYLl~G 173 (340)
T KOG0011|consen 138 TVQQIMEMGYDREEVERALRAAF-NNPERAVEYLLNG 173 (340)
T ss_pred HHHHHHHhCccHHHHHHHHHHhh-CChhhhHHHHhcC
Confidence 46789999999999999998754 4899999999973
No 278
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=22.64 E-value=1e+02 Score=34.36 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=31.8
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHH
Q 006172 521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 563 (658)
Q Consensus 521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~ 563 (658)
+|. +-+|||.=||.|=+++=--+||- +.|+|||.+..+..
T Consensus 58 lf~-dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 58 LFK-DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADF 97 (346)
T ss_pred hcC-CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHH
Confidence 454 35699999999999998889996 56889998877643
No 279
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=22.25 E-value=1e+02 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL 122 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~ 122 (658)
.++.+..|+.+||++.++.+|+.++
T Consensus 144 ~~ea~~AL~~LGy~~~ea~~al~~v 168 (196)
T PRK13901 144 FKELEQSIVNMGFDRKLVNSAIKEI 168 (196)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678899999999999999999874
No 280
>PLN02823 spermine synthase
Probab=21.84 E-value=2.4e+02 Score=31.02 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
+.-+||-|=.|.|++..-+.+.. .++.+..||||+...+..+.|+.... .+...++.+|.++.- + ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L----~---~~~ 174 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL----E---KRD 174 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH----h---hCC
Confidence 44567666555555544343432 23567889999999999998875321 122234455554321 1 123
Q ss_pred CCccEEEecC
Q 006172 600 GSIDFVICQN 609 (658)
Q Consensus 600 g~~DLVIGGp 609 (658)
+.+|+|+.-.
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 5799999863
No 281
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.58 E-value=2.5e+02 Score=29.17 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=53.3
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH-HHHHhhhcCCCCCccccccccccChhhHHH
Q 006172 516 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI-LKRWWESSGQTGELVQIEDIQALTTKKFES 594 (658)
Q Consensus 516 svLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t-~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~ 594 (658)
.-|+.++| .-++++=||.|-.+--|.+.=.+....++.|||+.|.++ +++- . .+.. + |.-+-.+-+..
T Consensus 37 ~eL~~~~~--~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA--~-~n~~-~-----~~~V~tdl~~~ 105 (209)
T KOG3191|consen 37 AELKGHNP--EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA--R-CNRV-H-----IDVVRTDLLSG 105 (209)
T ss_pred HHHhhcCc--eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH--H-hcCC-c-----cceeehhHHhh
Confidence 44666654 458999999999888776543345578899999998875 3321 1 1111 1 12222222211
Q ss_pred hhhccCCccEEEecCCCCCcc
Q 006172 595 LIHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 595 l~~~~g~~DLVIGGpPCQ~FS 615 (658)
+ +.+.+|+++--||--+-+
T Consensus 106 l--~~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 106 L--RNESVDVLVFNPPYVPTS 124 (209)
T ss_pred h--ccCCccEEEECCCcCcCC
Confidence 2 238999999999865544
No 282
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.50 E-value=4.1e+02 Score=29.86 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=24.0
Q ss_pred hhhHHHHhcCCCCCcc-c-CCCChHHH-HHhhhhhhccc
Q 006172 474 PEHIELILGYPSNHTQ-A-AGNSLTAR-LESLRHCFQTD 509 (658)
Q Consensus 474 ~~E~E~i~GfP~~~Tr-~-~~ls~teR-~k~Lgnsfqvd 509 (658)
...||+-||-|..+.. + .++..|++ ++.|+..+..+
T Consensus 223 a~~L~~~~giP~i~~~~~P~G~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 223 AQHLEEKYGQPYIHSPTLPIGAKATAEFLRQVAKFAGIE 261 (427)
T ss_pred HHHHHHHhCCceEecCCCccCHHHHHHHHHHHHHHhCCC
Confidence 6778899999987654 2 47776654 46666655443
No 283
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=1.4e+02 Score=31.77 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=42.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHH
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFE 593 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~-l~~~~DI~~Lt~~~Ie 593 (658)
..++-.+||+=|-.|||+.-+-+.|-. -|+|+|.--. +.+|.=.+.+.. .+...+++.++++++.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~-----Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYG-----QLHWKLRNDPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCC-----ccCHhHhcCCcEEEEecCChhhCCHHHcc
Confidence 356788999999999999888888875 4888887642 122321112221 1334567777776653
No 284
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=20.18 E-value=2.1e+02 Score=28.76 Aligned_cols=84 Identities=20% Similarity=0.148 Sum_probs=46.8
Q ss_pred cccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006172 527 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI 606 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI 606 (658)
.+||+=||-|.+-+.+-..-=+ ..++++|+...............+.+...++.+|...+-. .+. ..+.+|-|.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~----~~~-~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR----RLF-PPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH----HHS-TTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh----hcc-cCCchheEE
Confidence 5899999999997776554323 3678999998865544333333334444455667665322 221 236788888
Q ss_pred ecCCCCCccc
Q 006172 607 CQNSVPQIPN 616 (658)
Q Consensus 607 GGpPCQ~FS~ 616 (658)
=-+|+-=+-.
T Consensus 94 i~FPDPWpK~ 103 (195)
T PF02390_consen 94 INFPDPWPKK 103 (195)
T ss_dssp EES-----SG
T ss_pred EeCCCCCccc
Confidence 8888875543
Done!