Query 006172
Match_columns 658
No_of_seqs 242 out of 972
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 17:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 5.5E-26 1.9E-30 234.2 7.8 105 526-657 1-105 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 1.2E-24 4.2E-29 225.7 11.8 117 520-656 11-127 (295)
3 4h0n_A DNMT2; SAH binding, tra 99.9 2.1E-23 7.3E-28 219.5 9.8 111 525-657 3-114 (333)
4 3qv2_A 5-cytosine DNA methyltr 99.9 2.1E-23 7.2E-28 219.1 8.5 118 517-657 2-125 (327)
5 3me5_A Cytosine-specific methy 99.9 2.9E-23 1E-27 228.4 9.0 125 525-657 88-222 (482)
6 3g7u_A Cytosine-specific methy 99.9 9.6E-23 3.3E-27 217.6 8.9 113 525-657 2-114 (376)
7 2c7p_A Modification methylase 99.9 2.8E-22 9.7E-27 210.2 11.5 106 524-657 10-115 (327)
8 4ft4_B DNA (cytosine-5)-methyl 99.9 1.3E-22 4.4E-27 232.8 7.4 122 523-657 210-427 (784)
9 1g55_A DNA cytosine methyltran 99.9 3E-22 1E-26 210.7 8.9 111 525-657 2-114 (343)
10 4dkj_A Cytosine-specific methy 99.8 1E-21 3.5E-26 211.8 7.5 111 524-652 9-167 (403)
11 3swr_A DNA (cytosine-5)-methyl 99.8 1.3E-19 4.4E-24 213.5 5.7 120 522-657 537-664 (1002)
12 2qrv_B DNA (cytosine-5)-methyl 99.8 2.4E-19 8.1E-24 180.5 6.0 86 524-656 32-117 (230)
13 3av4_A DNA (cytosine-5)-methyl 99.8 1.3E-19 4.3E-24 218.2 3.3 118 524-657 850-975 (1330)
14 2pv0_B DNA (cytosine-5)-methyl 99.7 4.9E-18 1.7E-22 181.5 7.6 88 522-656 186-273 (386)
15 2qrv_A DNA (cytosine-5)-methyl 99.5 4E-14 1.4E-18 146.9 10.9 158 333-523 135-293 (295)
16 4h0n_A DNMT2; SAH binding, tra 99.4 5.4E-14 1.8E-18 148.1 3.0 177 330-519 111-332 (333)
17 3qv2_A 5-cytosine DNA methyltr 99.4 2.2E-13 7.4E-18 143.2 4.4 178 330-522 122-325 (327)
18 4ae4_A Ubiquitin-associated pr 99.3 5.2E-13 1.8E-17 122.2 1.8 111 9-139 5-115 (118)
19 4dkj_A Cytosine-specific methy 98.8 1E-09 3.5E-14 118.6 3.0 186 328-524 175-394 (403)
20 3ubt_Y Modification methylase 98.8 4.6E-10 1.6E-14 115.5 0.2 192 328-520 100-322 (331)
21 3me5_A Cytosine-specific methy 98.7 1.1E-08 3.6E-13 113.0 7.5 177 328-522 217-456 (482)
22 2c7p_A Modification methylase 98.7 1E-08 3.4E-13 107.6 6.7 182 329-521 111-321 (327)
23 2qrv_B DNA (cytosine-5)-methyl 98.7 3.8E-09 1.3E-13 106.5 1.6 54 331-385 123-176 (230)
24 1g55_A DNA cytosine methyltran 98.6 6.7E-08 2.3E-12 101.7 7.3 54 465-518 288-341 (343)
25 4ae4_A Ubiquitin-associated pr 98.5 2E-07 6.8E-12 85.3 9.1 104 98-209 8-113 (118)
26 2lbc_A Ubiquitin carboxyl-term 98.5 5.6E-07 1.9E-11 82.5 11.6 108 15-138 6-116 (126)
27 4ft4_B DNA (cytosine-5)-methyl 98.2 1.3E-06 4.5E-11 100.5 7.4 56 457-514 678-733 (784)
28 2lbc_A Ubiquitin carboxyl-term 98.1 2E-05 6.7E-10 72.2 10.3 105 100-210 5-116 (126)
29 3g7u_A Cytosine-specific methy 98.0 2.4E-06 8.3E-11 91.2 4.2 53 466-520 313-365 (376)
30 2igt_A SAM dependent methyltra 97.7 6.4E-05 2.2E-09 78.7 9.1 85 524-615 153-239 (332)
31 2pv0_B DNA (cytosine-5)-methyl 97.7 1.6E-05 5.6E-10 85.4 4.6 56 331-387 279-334 (386)
32 3c0k_A UPF0064 protein YCCW; P 97.6 0.00012 4E-09 77.7 9.5 86 524-615 220-307 (396)
33 3k6r_A Putative transferase PH 97.5 0.00013 4.3E-09 75.3 6.5 82 521-613 122-204 (278)
34 3gdh_A Trimethylguanosine synt 97.4 0.00022 7.4E-09 69.1 7.4 81 524-616 78-159 (241)
35 1wy7_A Hypothetical protein PH 97.4 0.00033 1.1E-08 66.1 8.4 78 524-615 49-126 (207)
36 2frn_A Hypothetical protein PH 97.4 0.00021 7.2E-09 72.2 7.2 80 523-613 124-204 (278)
37 3swr_A DNA (cytosine-5)-methyl 97.4 0.00024 8.2E-09 84.6 8.2 50 467-518 945-994 (1002)
38 2b78_A Hypothetical protein SM 97.2 0.00092 3.2E-08 71.0 9.4 86 524-615 212-299 (385)
39 1ws6_A Methyltransferase; stru 97.2 0.0006 2.1E-08 61.6 6.7 83 522-612 39-121 (171)
40 2yx1_A Hypothetical protein MJ 97.1 0.00072 2.4E-08 70.4 7.9 76 523-613 194-270 (336)
41 3p9n_A Possible methyltransfer 97.1 0.00047 1.6E-08 64.5 5.6 82 524-613 44-125 (189)
42 3a27_A TYW2, uncharacterized p 97.1 0.00081 2.8E-08 67.8 7.6 80 522-611 117-196 (272)
43 2cos_A Serine/threonine protei 97.1 0.0005 1.7E-08 54.7 4.5 41 13-53 10-50 (54)
44 4dmg_A Putative uncharacterize 97.1 0.00063 2.2E-08 73.0 6.7 77 524-611 214-290 (393)
45 2fpo_A Methylase YHHF; structu 97.0 0.00078 2.7E-08 64.4 6.5 77 525-610 55-131 (202)
46 1whc_A RSGI RUH-027, UBA/UBX 3 97.0 0.00091 3.1E-08 54.8 5.9 39 14-52 11-49 (64)
47 3ajd_A Putative methyltransfer 97.0 0.0007 2.4E-08 68.1 6.4 88 524-617 83-172 (274)
48 2ift_A Putative methylase HI07 97.0 0.00082 2.8E-08 64.3 6.2 80 524-611 53-135 (201)
49 2crn_A Ubash3A protein; compac 97.0 0.00082 2.8E-08 55.2 5.3 40 13-52 10-49 (64)
50 2dak_A Ubiquitin carboxyl-term 97.0 0.00074 2.5E-08 55.0 4.9 48 5-53 2-49 (63)
51 2as0_A Hypothetical protein PH 97.0 0.0014 4.8E-08 69.3 8.1 86 524-615 217-303 (396)
52 1ne2_A Hypothetical protein TA 96.9 0.0019 6.4E-08 60.9 7.4 74 524-615 51-124 (200)
53 2ekk_A UBA domain from E3 ubiq 96.9 0.00076 2.6E-08 51.7 3.8 36 13-50 10-45 (47)
54 1wgn_A UBAP1, ubiquitin associ 96.9 0.0011 3.9E-08 54.1 4.9 42 96-139 17-58 (63)
55 1ify_A HHR23A, UV excision rep 96.8 0.0017 5.8E-08 50.5 5.1 40 97-138 7-46 (49)
56 3lpm_A Putative methyltransfer 96.7 0.0032 1.1E-07 62.2 8.2 83 524-614 49-132 (259)
57 3evz_A Methyltransferase; NYSG 96.7 0.0036 1.2E-07 59.9 8.3 83 522-615 53-137 (230)
58 1wxx_A TT1595, hypothetical pr 96.7 0.0026 8.8E-08 67.2 7.9 85 524-615 209-293 (382)
59 3bt7_A TRNA (uracil-5-)-methyl 96.7 0.0017 6E-08 68.3 6.1 83 525-614 214-308 (369)
60 1oqy_A HHR23A, UV excision rep 96.7 0.0037 1.3E-07 67.0 8.5 36 15-51 171-206 (368)
61 1vg5_A RSGI RUH-014, rhomboid 96.6 0.0014 4.7E-08 55.4 4.1 40 98-139 29-68 (73)
62 2fhp_A Methylase, putative; al 96.6 0.0039 1.3E-07 57.2 7.5 81 524-610 44-125 (187)
63 3v97_A Ribosomal RNA large sub 96.6 0.0033 1.1E-07 72.3 8.3 81 524-613 539-621 (703)
64 3tma_A Methyltransferase; thum 96.6 0.0075 2.6E-07 62.6 10.2 80 524-612 203-283 (354)
65 3grz_A L11 mtase, ribosomal pr 96.6 0.0034 1.1E-07 59.2 6.9 85 517-613 53-137 (205)
66 2g3q_A Protein YBL047C; endocy 96.6 0.0035 1.2E-07 47.0 5.5 37 99-137 5-41 (43)
67 1ixk_A Methyltransferase; open 96.6 0.005 1.7E-07 63.5 8.4 86 524-617 118-203 (315)
68 3av4_A DNA (cytosine-5)-methyl 96.5 0.0038 1.3E-07 76.4 8.5 51 328-378 970-1029(1330)
69 2jjq_A Uncharacterized RNA met 96.5 0.0041 1.4E-07 67.3 7.9 77 523-613 289-365 (425)
70 2dak_A Ubiquitin carboxyl-term 96.5 0.0032 1.1E-07 51.2 5.2 41 98-140 9-49 (63)
71 2esr_A Methyltransferase; stru 96.5 0.0021 7.2E-08 59.0 4.7 79 524-611 31-110 (177)
72 4dzr_A Protein-(glutamine-N5) 96.5 0.0018 6.1E-08 60.4 4.3 87 523-615 29-115 (215)
73 2b9e_A NOL1/NOP2/SUN domain fa 96.4 0.0057 2E-07 63.5 8.0 88 524-617 102-190 (309)
74 2b3t_A Protein methyltransfera 96.4 0.0051 1.7E-07 61.4 7.4 82 524-615 109-190 (276)
75 1wji_A Tudor domain containing 96.4 0.0042 1.4E-07 50.8 5.5 40 99-140 10-49 (63)
76 2h00_A Methyltransferase 10 do 96.4 0.0059 2E-07 59.7 7.6 86 524-615 65-154 (254)
77 2ekk_A UBA domain from E3 ubiq 96.4 0.0019 6.6E-08 49.4 3.2 38 98-138 9-46 (47)
78 3axs_A Probable N(2),N(2)-dime 96.4 0.0037 1.3E-07 67.3 6.6 80 524-613 52-137 (392)
79 3mti_A RRNA methylase; SAM-dep 96.4 0.0053 1.8E-07 56.7 6.8 84 518-611 16-99 (185)
80 1whc_A RSGI RUH-027, UBA/UBX 3 96.4 0.004 1.4E-07 51.0 5.1 38 101-139 12-49 (64)
81 2vdv_E TRNA (guanine-N(7)-)-me 96.3 0.0064 2.2E-07 59.6 7.2 85 524-614 49-141 (246)
82 3tm4_A TRNA (guanine N2-)-meth 96.3 0.0095 3.3E-07 62.8 8.8 80 523-611 216-296 (373)
83 1z96_A DNA-damage, UBA-domain 96.3 0.0049 1.7E-07 45.0 4.6 36 98-135 4-39 (40)
84 1veg_A NEDD8 ultimate buster-1 96.3 0.0051 1.8E-07 53.1 5.4 41 98-140 29-69 (83)
85 1nv8_A HEMK protein; class I a 96.3 0.0089 3.1E-07 60.8 8.2 82 525-616 124-207 (284)
86 1wgn_A UBAP1, ubiquitin associ 96.2 0.0019 6.6E-08 52.8 2.5 37 15-52 22-58 (63)
87 1wji_A Tudor domain containing 96.2 0.0057 2E-07 50.0 5.1 37 15-52 12-48 (63)
88 2knz_A Ubiquilin-4; cytoplasm, 96.2 0.0058 2E-07 48.2 4.8 42 96-139 9-51 (53)
89 2g3q_A Protein YBL047C; endocy 96.1 0.005 1.7E-07 46.1 4.2 35 15-50 7-41 (43)
90 3m4x_A NOL1/NOP2/SUN family pr 96.1 0.0058 2E-07 67.0 6.4 86 524-617 105-191 (456)
91 1vek_A UBP14, ubiquitin-specif 96.1 0.011 3.7E-07 51.0 6.7 41 98-139 29-69 (84)
92 2dag_A Ubiquitin carboxyl-term 96.1 0.0066 2.3E-07 51.1 5.1 41 98-139 9-49 (74)
93 2dag_A Ubiquitin carboxyl-term 96.0 0.005 1.7E-07 51.8 4.2 39 14-52 11-49 (74)
94 2h1r_A Dimethyladenosine trans 96.0 0.0072 2.5E-07 61.9 6.1 79 524-615 42-120 (299)
95 2crn_A Ubash3A protein; compac 96.0 0.007 2.4E-07 49.7 4.8 38 101-139 12-49 (64)
96 1ify_A HHR23A, UV excision rep 96.0 0.0044 1.5E-07 48.1 3.3 35 15-50 11-45 (49)
97 3m6w_A RRNA methylase; rRNA me 96.0 0.0096 3.3E-07 65.5 7.3 86 524-617 101-186 (464)
98 3ll7_A Putative methyltransfer 96.0 0.0092 3.1E-07 64.7 7.0 79 525-612 94-174 (410)
99 2ozv_A Hypothetical protein AT 96.0 0.012 4E-07 58.7 7.2 89 524-614 36-128 (260)
100 1ve3_A Hypothetical protein PH 95.9 0.015 5E-07 55.0 7.4 76 523-610 37-112 (227)
101 1zq9_A Probable dimethyladenos 95.9 0.0076 2.6E-07 61.3 5.7 78 524-614 28-106 (285)
102 1uwv_A 23S rRNA (uracil-5-)-me 95.9 0.014 4.7E-07 62.9 8.0 85 524-615 286-370 (433)
103 2dul_A N(2),N(2)-dimethylguano 95.9 0.0073 2.5E-07 64.4 5.8 79 524-612 47-142 (378)
104 2frx_A Hypothetical protein YE 95.9 0.011 3.7E-07 65.1 7.0 86 524-617 117-203 (479)
105 3lbf_A Protein-L-isoaspartate 95.8 0.025 8.5E-07 53.3 8.4 81 523-614 76-156 (210)
106 1dus_A MJ0882; hypothetical pr 95.7 0.022 7.4E-07 52.0 7.5 77 524-612 52-130 (194)
107 1wiv_A UBP14, ubiquitin-specif 95.7 0.0099 3.4E-07 49.9 4.7 40 98-139 29-68 (73)
108 1vek_A UBP14, ubiquitin-specif 95.7 0.0081 2.8E-07 51.8 4.2 39 14-52 31-69 (84)
109 3dmg_A Probable ribosomal RNA 95.7 0.018 6.3E-07 61.3 7.9 77 524-612 233-309 (381)
110 2f8l_A Hypothetical protein LM 95.7 0.01 3.6E-07 61.4 5.8 80 524-613 130-213 (344)
111 2cpw_A CBL-interacting protein 95.7 0.007 2.4E-07 49.6 3.5 37 15-51 22-58 (64)
112 2pxx_A Uncharacterized protein 95.7 0.016 5.5E-07 54.0 6.5 83 518-612 36-118 (215)
113 3k0b_A Predicted N6-adenine-sp 95.7 0.019 6.6E-07 61.4 7.9 79 524-611 201-317 (393)
114 2cpw_A CBL-interacting protein 95.7 0.007 2.4E-07 49.6 3.4 37 101-138 22-58 (64)
115 1oqy_A HHR23A, UV excision rep 95.6 0.034 1.2E-06 59.5 9.4 41 96-138 166-206 (368)
116 1vg5_A RSGI RUH-014, rhomboid 95.6 0.01 3.5E-07 50.0 4.2 37 15-52 32-68 (73)
117 3gru_A Dimethyladenosine trans 95.6 0.012 4.1E-07 60.9 5.7 96 502-612 28-125 (295)
118 2pbf_A Protein-L-isoaspartate 95.6 0.031 1.1E-06 53.4 8.2 96 515-614 71-175 (227)
119 2yxl_A PH0851 protein, 450AA l 95.6 0.025 8.4E-07 61.2 8.3 88 524-617 259-346 (450)
120 3ldu_A Putative methylase; str 95.5 0.015 5E-07 62.1 6.4 79 523-610 194-310 (385)
121 3m70_A Tellurite resistance pr 95.5 0.022 7.7E-07 56.4 7.3 76 524-612 120-195 (286)
122 2jy5_A Ubiquilin-1; UBA, alter 95.5 0.012 4.3E-07 46.1 4.3 38 98-137 12-50 (52)
123 2ih2_A Modification methylase 95.5 0.014 4.8E-07 61.2 6.0 96 500-616 16-113 (421)
124 2yxd_A Probable cobalt-precorr 95.4 0.026 8.9E-07 51.1 6.8 75 524-610 35-109 (183)
125 3eey_A Putative rRNA methylase 95.4 0.014 4.8E-07 54.4 5.1 82 522-611 20-103 (197)
126 2nxc_A L11 mtase, ribosomal pr 95.4 0.016 5.6E-07 57.5 5.9 75 523-610 119-193 (254)
127 3q87_B N6 adenine specific DNA 95.4 0.01 3.4E-07 55.2 4.0 69 525-615 24-92 (170)
128 1veg_A NEDD8 ultimate buster-1 95.4 0.017 5.9E-07 49.8 5.0 39 14-53 31-69 (83)
129 3e05_A Precorrin-6Y C5,15-meth 95.4 0.036 1.2E-06 52.1 7.8 80 524-612 40-119 (204)
130 3tqs_A Ribosomal RNA small sub 95.3 0.013 4.3E-07 59.3 4.7 99 500-610 5-105 (255)
131 3ldg_A Putative uncharacterize 95.3 0.027 9.3E-07 60.2 7.5 79 524-611 194-310 (384)
132 2dai_A Ubadc1, ubiquitin assoc 95.3 0.056 1.9E-06 46.5 7.9 40 98-139 29-68 (83)
133 1i1n_A Protein-L-isoaspartate 95.3 0.034 1.2E-06 53.0 7.3 91 515-614 68-164 (226)
134 3sm3_A SAM-dependent methyltra 95.2 0.03 1E-06 52.9 6.6 85 517-612 23-112 (235)
135 2xvm_A Tellurite resistance pr 95.2 0.044 1.5E-06 50.5 7.6 74 525-610 33-106 (199)
136 3cgg_A SAM-dependent methyltra 95.2 0.033 1.1E-06 50.8 6.6 76 522-613 44-119 (195)
137 1sqg_A SUN protein, FMU protei 95.2 0.037 1.3E-06 59.3 8.0 86 524-617 246-331 (429)
138 3l8d_A Methyltransferase; stru 95.1 0.023 7.9E-07 54.3 5.7 82 514-609 43-124 (242)
139 1z96_A DNA-damage, UBA-domain 95.1 0.015 5.3E-07 42.3 3.3 34 15-49 7-40 (40)
140 2knz_A Ubiquilin-4; cytoplasm, 95.1 0.024 8.1E-07 44.7 4.6 36 15-51 14-50 (53)
141 3njr_A Precorrin-6Y methylase; 95.1 0.049 1.7E-06 52.1 7.7 75 524-609 55-130 (204)
142 3e23_A Uncharacterized protein 95.0 0.048 1.6E-06 51.3 7.5 70 522-609 41-110 (211)
143 1yzh_A TRNA (guanine-N(7)-)-me 95.0 0.045 1.5E-06 52.1 7.3 82 524-612 41-122 (214)
144 3fut_A Dimethyladenosine trans 95.0 0.035 1.2E-06 56.7 6.8 75 524-612 47-121 (271)
145 2qm3_A Predicted methyltransfe 95.0 0.038 1.3E-06 58.1 7.2 81 524-613 172-253 (373)
146 3ihp_A Ubiquitin carboxyl-term 94.9 0.079 2.7E-06 62.3 10.5 107 14-140 654-760 (854)
147 2jy5_A Ubiquilin-1; UBA, alter 94.9 0.018 6E-07 45.3 3.4 35 15-50 15-50 (52)
148 1wiv_A UBP14, ubiquitin-specif 94.9 0.02 6.7E-07 48.1 3.9 36 15-51 32-67 (73)
149 3pfg_A N-methyltransferase; N, 94.9 0.024 8.2E-07 55.4 5.2 77 516-609 42-118 (263)
150 3mb5_A SAM-dependent methyltra 94.8 0.055 1.9E-06 52.6 7.4 79 524-612 93-173 (255)
151 1qam_A ERMC' methyltransferase 94.8 0.042 1.4E-06 54.5 6.6 76 524-612 30-105 (244)
152 2kw5_A SLR1183 protein; struct 94.8 0.039 1.3E-06 51.5 6.1 73 523-608 29-101 (202)
153 1y8c_A S-adenosylmethionine-de 94.8 0.047 1.6E-06 51.9 6.7 74 523-609 36-109 (246)
154 1m6y_A S-adenosyl-methyltransf 94.7 0.058 2E-06 55.9 7.7 85 524-613 26-110 (301)
155 4azs_A Methyltransferase WBDD; 94.7 0.012 4.2E-07 65.4 2.8 77 523-608 65-141 (569)
156 2dkl_A Trinucleotide repeat co 94.7 0.029 1E-06 48.4 4.5 40 98-139 21-60 (85)
157 1l3i_A Precorrin-6Y methyltran 94.6 0.054 1.8E-06 49.2 6.4 79 524-613 33-112 (192)
158 1vbf_A 231AA long hypothetical 94.6 0.074 2.5E-06 50.7 7.7 79 524-615 70-148 (231)
159 3g5l_A Putative S-adenosylmeth 94.5 0.045 1.5E-06 53.0 6.1 73 524-609 44-116 (253)
160 3dou_A Ribosomal RNA large sub 94.5 0.046 1.6E-06 52.2 6.0 77 522-612 23-102 (191)
161 2dkl_A Trinucleotide repeat co 94.5 0.023 7.9E-07 49.1 3.5 36 15-51 24-59 (85)
162 2d9s_A CBL E3 ubiquitin protei 94.5 0.052 1.8E-06 43.1 5.1 40 13-53 10-49 (53)
163 3s1s_A Restriction endonucleas 94.5 0.043 1.5E-06 64.4 6.7 103 503-612 295-410 (878)
164 2dai_A Ubadc1, ubiquitin assoc 94.5 0.029 1E-06 48.2 4.0 37 15-52 32-68 (83)
165 3kkz_A Uncharacterized protein 94.5 0.075 2.6E-06 52.1 7.5 83 522-614 44-127 (267)
166 1wzn_A SAM-dependent methyltra 94.4 0.079 2.7E-06 51.1 7.5 71 524-607 41-111 (252)
167 4dcm_A Ribosomal RNA large sub 94.4 0.05 1.7E-06 57.7 6.5 77 526-612 224-303 (375)
168 3ou2_A SAM-dependent methyltra 94.4 0.058 2E-06 50.4 6.2 80 512-608 35-114 (218)
169 3ggd_A SAM-dependent methyltra 94.4 0.081 2.8E-06 50.9 7.4 86 520-614 52-137 (245)
170 1o9g_A RRNA methyltransferase; 94.3 0.022 7.5E-07 55.7 3.3 45 524-569 51-97 (250)
171 3f4k_A Putative methyltransfer 94.3 0.13 4.4E-06 49.7 8.5 81 523-613 45-126 (257)
172 3bgv_A MRNA CAP guanine-N7 met 94.2 0.056 1.9E-06 54.6 6.0 95 511-609 21-122 (313)
173 1o54_A SAM-dependent O-methylt 94.2 0.082 2.8E-06 52.5 7.1 79 524-612 112-192 (277)
174 2ooa_A E3 ubiquitin-protein li 94.2 0.083 2.8E-06 41.8 5.6 35 100-136 13-47 (52)
175 3duw_A OMT, O-methyltransferas 94.1 0.082 2.8E-06 50.3 6.8 84 524-614 58-146 (223)
176 2oyr_A UPF0341 protein YHIQ; a 94.1 0.055 1.9E-06 55.0 5.8 41 526-569 90-130 (258)
177 2r6z_A UPF0341 protein in RSP 94.1 0.038 1.3E-06 55.7 4.6 81 524-611 83-171 (258)
178 1dl5_A Protein-L-isoaspartate 94.1 0.094 3.2E-06 53.6 7.5 84 524-615 75-158 (317)
179 2cos_A Serine/threonine protei 94.1 0.049 1.7E-06 43.4 4.1 39 99-138 10-48 (54)
180 3dh0_A SAM dependent methyltra 94.0 0.082 2.8E-06 49.8 6.5 79 523-609 36-114 (219)
181 4htf_A S-adenosylmethionine-de 94.0 0.077 2.6E-06 52.5 6.5 79 522-610 66-145 (285)
182 2okc_A Type I restriction enzy 94.0 0.1 3.6E-06 56.1 8.0 83 524-615 171-267 (445)
183 2yvl_A TRMI protein, hypotheti 93.9 0.12 4.2E-06 49.5 7.6 76 524-610 91-167 (248)
184 1jsx_A Glucose-inhibited divis 93.9 0.09 3.1E-06 49.2 6.5 71 525-607 66-138 (207)
185 1wr1_B Ubiquitin-like protein 93.9 0.077 2.6E-06 42.7 5.1 41 96-138 15-56 (58)
186 2fca_A TRNA (guanine-N(7)-)-me 93.9 0.16 5.6E-06 48.7 8.4 82 524-612 38-119 (213)
187 2dah_A Ubiquilin-3; UBA domain 93.8 0.074 2.5E-06 42.2 4.8 39 98-138 9-48 (54)
188 1yb2_A Hypothetical protein TA 93.8 0.12 4E-06 51.6 7.5 76 523-610 109-188 (275)
189 2zig_A TTHA0409, putative modi 93.8 0.076 2.6E-06 54.1 6.3 45 524-571 235-279 (297)
190 3mgg_A Methyltransferase; NYSG 93.8 0.14 4.7E-06 50.2 7.8 83 522-613 35-117 (276)
191 2bwb_A Ubiquitin-like protein 93.7 0.11 3.7E-06 39.9 5.5 39 97-137 6-45 (46)
192 2pwy_A TRNA (adenine-N(1)-)-me 93.7 0.14 4.7E-06 49.5 7.6 80 524-612 96-177 (258)
193 3dtn_A Putative methyltransfer 93.7 0.095 3.2E-06 50.0 6.4 79 522-614 42-122 (234)
194 3lcc_A Putative methyl chlorid 93.7 0.068 2.3E-06 51.2 5.4 76 526-613 68-144 (235)
195 3vc1_A Geranyl diphosphate 2-C 93.6 0.12 4.2E-06 52.2 7.3 84 513-608 107-192 (312)
196 1dv0_A DNA repair protein HHR2 93.6 0.02 6.9E-07 44.1 1.2 38 98-137 4-41 (47)
197 1xxl_A YCGJ protein; structura 93.6 0.11 3.8E-06 50.2 6.7 79 523-612 20-98 (239)
198 2p7i_A Hypothetical protein; p 93.6 0.08 2.7E-06 50.2 5.5 81 512-609 31-111 (250)
199 1dv0_A DNA repair protein HHR2 93.6 0.03 1E-06 43.2 2.0 35 15-50 7-41 (47)
200 2yqz_A Hypothetical protein TT 93.6 0.13 4.4E-06 49.6 7.1 77 522-610 37-113 (263)
201 1pjz_A Thiopurine S-methyltran 93.5 0.13 4.3E-06 49.0 6.9 75 523-607 21-107 (203)
202 3h2b_A SAM-dependent methyltra 93.5 0.11 3.9E-06 48.3 6.4 69 525-609 42-110 (203)
203 2d9s_A CBL E3 ubiquitin protei 93.4 0.12 4.1E-06 41.1 5.3 35 100-136 11-45 (53)
204 3bzb_A Uncharacterized protein 93.4 0.23 7.8E-06 49.9 8.9 44 524-569 79-123 (281)
205 2gb4_A Thiopurine S-methyltran 93.3 0.11 3.9E-06 51.8 6.4 74 524-607 68-158 (252)
206 3ofk_A Nodulation protein S; N 93.3 0.072 2.4E-06 50.2 4.7 72 524-609 51-122 (216)
207 2ooa_A E3 ubiquitin-protein li 93.3 0.093 3.2E-06 41.6 4.4 36 15-51 14-49 (52)
208 3hm2_A Precorrin-6Y C5,15-meth 93.2 0.14 4.9E-06 46.3 6.5 82 524-613 25-106 (178)
209 1xdz_A Methyltransferase GIDB; 93.2 0.08 2.7E-06 51.5 5.1 81 523-609 69-149 (240)
210 1mjf_A Spermidine synthase; sp 93.2 0.07 2.4E-06 53.9 4.8 78 523-611 74-162 (281)
211 1g8a_A Fibrillarin-like PRE-rR 93.2 0.23 8E-06 47.3 8.2 80 523-610 72-152 (227)
212 3r0q_C Probable protein argini 93.1 0.14 4.9E-06 53.9 7.2 74 524-609 63-137 (376)
213 1vl5_A Unknown conserved prote 93.1 0.14 4.9E-06 49.7 6.7 93 507-612 22-114 (260)
214 1vej_A Riken cDNA 4931431F19; 93.1 0.27 9.1E-06 41.5 7.3 40 97-138 28-68 (74)
215 3jwh_A HEN1; methyltransferase 93.0 0.26 8.7E-06 46.6 8.1 78 524-610 29-111 (217)
216 3dxy_A TRNA (guanine-N(7)-)-me 93.0 0.11 3.7E-06 50.6 5.6 84 524-613 34-117 (218)
217 2bwb_A Ubiquitin-like protein 93.0 0.084 2.9E-06 40.5 3.7 35 15-50 10-45 (46)
218 4fp9_B Mterf domain-containing 92.9 0.23 8E-06 52.4 8.4 26 14-39 48-73 (335)
219 3m33_A Uncharacterized protein 92.9 0.16 5.3E-06 48.8 6.5 72 523-609 47-119 (226)
220 3iv6_A Putative Zn-dependent a 92.9 0.13 4.3E-06 52.4 6.1 81 523-615 44-124 (261)
221 3hnr_A Probable methyltransfer 92.8 0.22 7.4E-06 46.9 7.3 73 524-612 45-117 (220)
222 3g89_A Ribosomal RNA small sub 92.8 0.12 3.9E-06 51.5 5.6 79 523-607 79-157 (249)
223 2ex4_A Adrenal gland protein A 92.8 0.084 2.9E-06 50.9 4.5 76 524-609 79-154 (241)
224 3g2m_A PCZA361.24; SAM-depende 92.8 0.14 4.7E-06 51.3 6.2 70 526-607 84-156 (299)
225 2ar0_A M.ecoki, type I restric 92.8 0.099 3.4E-06 58.2 5.6 85 524-615 169-275 (541)
226 3ocj_A Putative exported prote 92.8 0.15 5.1E-06 51.4 6.4 80 521-609 115-195 (305)
227 3tr6_A O-methyltransferase; ce 92.8 0.22 7.7E-06 47.2 7.3 80 525-611 65-150 (225)
228 3adn_A Spermidine synthase; am 92.7 0.17 5.6E-06 52.0 6.8 81 523-611 82-167 (294)
229 3d2l_A SAM-dependent methyltra 92.7 0.14 4.9E-06 48.7 5.9 73 522-608 31-103 (243)
230 3jwg_A HEN1, methyltransferase 92.6 0.26 8.8E-06 46.6 7.5 46 524-570 29-74 (219)
231 2yxe_A Protein-L-isoaspartate 92.6 0.23 7.9E-06 46.7 7.2 83 524-614 77-159 (215)
232 1r18_A Protein-L-isoaspartate( 92.6 0.12 4.1E-06 49.5 5.3 93 513-614 73-176 (227)
233 1jg1_A PIMT;, protein-L-isoasp 92.6 0.23 7.9E-06 47.9 7.3 81 524-614 91-171 (235)
234 1inl_A Spermidine synthase; be 92.6 0.12 4.1E-06 52.8 5.5 81 523-612 89-174 (296)
235 3bxo_A N,N-dimethyltransferase 92.6 0.09 3.1E-06 50.0 4.2 73 518-607 34-106 (239)
236 3q7e_A Protein arginine N-meth 92.5 0.16 5.6E-06 52.8 6.5 76 524-610 66-142 (349)
237 1ri5_A MRNA capping enzyme; me 92.5 0.15 5.1E-06 50.1 5.9 79 522-609 62-141 (298)
238 3hem_A Cyclopropane-fatty-acyl 92.5 0.26 8.9E-06 49.3 7.7 73 523-609 71-145 (302)
239 3ntv_A MW1564 protein; rossman 92.5 0.24 8.1E-06 48.1 7.2 84 524-614 71-155 (232)
240 2cp8_A NEXT to BRCA1 gene 1 pr 92.4 0.081 2.8E-06 42.2 3.1 38 14-52 11-49 (54)
241 2qfm_A Spermine synthase; sper 92.3 0.18 6.2E-06 54.0 6.6 83 523-611 187-277 (364)
242 3kr9_A SAM-dependent methyltra 92.3 0.27 9.3E-06 49.0 7.5 53 519-572 10-62 (225)
243 1i9g_A Hypothetical protein RV 92.3 0.24 8.4E-06 48.6 7.1 79 524-611 99-181 (280)
244 3lkd_A Type I restriction-modi 92.2 0.11 3.8E-06 58.1 5.0 84 524-612 221-308 (542)
245 1fbn_A MJ fibrillarin homologu 92.0 0.32 1.1E-05 46.9 7.5 77 523-608 73-150 (230)
246 3ujc_A Phosphoethanolamine N-m 92.0 0.21 7.2E-06 48.0 6.2 75 523-610 54-129 (266)
247 2gpy_A O-methyltransferase; st 92.0 0.2 6.7E-06 48.2 5.9 85 524-614 54-139 (233)
248 3bkw_A MLL3908 protein, S-aden 92.0 0.25 8.6E-06 47.0 6.6 74 524-610 43-116 (243)
249 1zx0_A Guanidinoacetate N-meth 91.9 0.17 5.8E-06 48.8 5.4 75 524-607 60-134 (236)
250 1iy9_A Spermidine synthase; ro 91.9 0.18 6.1E-06 51.0 5.7 80 523-611 74-158 (275)
251 2avd_A Catechol-O-methyltransf 91.9 0.37 1.3E-05 45.8 7.6 85 524-612 69-156 (229)
252 3lec_A NADB-rossmann superfami 91.8 0.31 1.1E-05 48.8 7.4 52 520-572 17-68 (230)
253 3v97_A Ribosomal RNA large sub 91.8 0.19 6.4E-06 57.8 6.4 82 524-611 190-313 (703)
254 3u81_A Catechol O-methyltransf 91.8 0.18 6.2E-06 48.2 5.4 83 525-614 59-147 (221)
255 1wr1_B Ubiquitin-like protein 91.7 0.14 4.9E-06 41.2 3.8 36 15-51 20-56 (58)
256 2pjd_A Ribosomal RNA small sub 91.6 0.36 1.2E-05 49.9 7.8 76 525-612 197-272 (343)
257 2avn_A Ubiquinone/menaquinone 91.6 0.2 7E-06 48.9 5.7 72 522-610 52-123 (260)
258 2gs9_A Hypothetical protein TT 91.6 0.24 8.4E-06 46.3 5.9 76 518-611 30-105 (211)
259 1wj7_A Hypothetical protein (R 91.6 0.23 7.9E-06 44.5 5.3 40 97-138 38-78 (104)
260 3ftd_A Dimethyladenosine trans 91.5 0.13 4.3E-06 51.6 4.1 76 524-612 31-106 (249)
261 1vej_A Riken cDNA 4931431F19; 91.5 0.13 4.4E-06 43.5 3.5 35 15-50 32-67 (74)
262 2y1w_A Histone-arginine methyl 91.4 0.33 1.1E-05 50.4 7.3 75 524-610 50-125 (348)
263 3e8s_A Putative SAM dependent 91.4 0.25 8.5E-06 46.1 5.8 76 524-612 52-127 (227)
264 2juj_A E3 ubiquitin-protein li 91.4 0.3 1E-05 39.1 5.2 38 98-137 7-44 (56)
265 1ej0_A FTSJ; methyltransferase 91.3 0.16 5.4E-06 45.1 4.1 80 523-615 21-102 (180)
266 1g60_A Adenine-specific methyl 91.3 0.23 7.8E-06 49.6 5.7 43 524-569 212-254 (260)
267 2dah_A Ubiquilin-3; UBA domain 91.2 0.29 1E-05 38.7 5.1 37 14-51 11-48 (54)
268 3gnl_A Uncharacterized protein 91.2 0.4 1.4E-05 48.5 7.4 52 520-572 17-68 (244)
269 1nkv_A Hypothetical protein YJ 91.1 0.42 1.4E-05 46.0 7.3 73 523-607 35-109 (256)
270 1xtp_A LMAJ004091AAA; SGPP, st 91.0 0.21 7E-06 48.0 4.9 74 524-609 93-166 (254)
271 3tfw_A Putative O-methyltransf 91.0 0.46 1.6E-05 46.7 7.5 82 524-613 63-148 (248)
272 2ipx_A RRNA 2'-O-methyltransfe 91.0 0.38 1.3E-05 46.2 6.7 79 524-610 77-156 (233)
273 3dlc_A Putative S-adenosyl-L-m 90.9 0.49 1.7E-05 43.9 7.3 75 527-612 46-122 (219)
274 3khk_A Type I restriction-modi 90.9 0.2 6.8E-06 56.0 5.4 80 526-612 246-340 (544)
275 2p8j_A S-adenosylmethionine-de 90.9 0.57 1.9E-05 43.5 7.6 75 523-609 22-97 (209)
276 3cc8_A Putative methyltransfer 90.8 0.35 1.2E-05 45.2 6.2 73 523-611 31-103 (230)
277 2fk8_A Methoxy mycolic acid sy 90.8 0.47 1.6E-05 47.7 7.6 73 523-609 89-163 (318)
278 2oo9_A E3 ubiquitin-protein li 90.8 0.5 1.7E-05 36.5 5.7 37 98-136 4-40 (46)
279 2fyt_A Protein arginine N-meth 90.8 0.39 1.3E-05 49.8 7.1 75 524-609 64-139 (340)
280 2p35_A Trans-aconitate 2-methy 90.8 0.44 1.5E-05 45.8 7.0 74 524-614 33-108 (259)
281 1kpg_A CFA synthase;, cyclopro 90.7 0.53 1.8E-05 46.4 7.6 73 523-609 63-137 (287)
282 3dli_A Methyltransferase; PSI- 90.6 0.29 9.9E-06 47.1 5.6 44 520-566 37-80 (240)
283 3g5t_A Trans-aconitate 3-methy 90.6 0.46 1.6E-05 47.4 7.2 83 524-610 36-122 (299)
284 3k9o_A Ubiquitin-conjugating e 90.6 0.28 9.4E-06 48.0 5.4 39 97-137 162-200 (201)
285 3g07_A 7SK snRNA methylphospha 90.6 0.47 1.6E-05 47.7 7.3 51 515-568 37-89 (292)
286 2dna_A Unnamed protein product 90.4 0.28 9.7E-06 40.7 4.5 43 96-140 17-60 (67)
287 4gek_A TRNA (CMO5U34)-methyltr 90.4 0.43 1.5E-05 47.8 6.8 78 522-609 68-147 (261)
288 1yub_A Ermam, rRNA methyltrans 90.2 0.03 1E-06 55.1 -1.8 77 524-613 29-105 (245)
289 3dr5_A Putative O-methyltransf 90.2 0.25 8.5E-06 48.1 4.7 82 525-613 57-141 (221)
290 3gu3_A Methyltransferase; alph 90.0 0.33 1.1E-05 48.3 5.5 75 523-610 21-98 (284)
291 1g6q_1 HnRNP arginine N-methyl 89.8 0.55 1.9E-05 48.3 7.2 76 524-610 38-114 (328)
292 3b3j_A Histone-arginine methyl 89.5 0.45 1.5E-05 52.2 6.5 75 524-610 158-233 (480)
293 3uzu_A Ribosomal RNA small sub 89.4 0.43 1.5E-05 48.7 6.0 81 524-610 42-123 (279)
294 2o07_A Spermidine synthase; st 89.3 0.29 1E-05 50.3 4.6 81 523-611 94-178 (304)
295 2b25_A Hypothetical protein; s 89.1 0.6 2E-05 47.7 6.8 82 524-612 105-198 (336)
296 2nyu_A Putative ribosomal RNA 89.0 0.5 1.7E-05 43.5 5.6 77 523-611 21-107 (196)
297 4hg2_A Methyltransferase type 88.9 0.17 5.9E-06 50.8 2.5 74 518-608 33-106 (257)
298 4hc4_A Protein arginine N-meth 88.9 0.57 1.9E-05 50.1 6.6 71 525-607 84-155 (376)
299 4fzv_A Putative methyltransfer 88.7 1.4 4.6E-05 46.9 9.3 88 524-614 148-236 (359)
300 2i7c_A Spermidine synthase; tr 88.5 0.45 1.5E-05 48.1 5.3 81 523-611 77-161 (283)
301 3ccf_A Cyclopropane-fatty-acyl 88.4 0.85 2.9E-05 44.9 7.2 71 524-611 57-127 (279)
302 2hnk_A SAM-dependent O-methylt 88.4 0.74 2.5E-05 44.4 6.6 49 524-572 60-108 (239)
303 2o57_A Putative sarcosine dime 88.3 0.82 2.8E-05 45.2 7.0 76 523-609 81-158 (297)
304 2cwb_A Chimera of immunoglobul 88.0 0.69 2.3E-05 41.7 5.5 39 98-138 66-105 (108)
305 2juj_A E3 ubiquitin-protein li 87.9 0.48 1.6E-05 37.9 3.9 39 14-53 9-47 (56)
306 1ixs_A Holliday junction DNA h 87.8 0.88 3E-05 36.9 5.6 39 98-136 17-58 (62)
307 3bus_A REBM, methyltransferase 87.8 1.4 4.7E-05 42.9 8.1 79 524-613 61-141 (273)
308 1p91_A Ribosomal RNA large sub 87.7 0.73 2.5E-05 44.9 6.1 71 523-609 84-156 (269)
309 3thr_A Glycine N-methyltransfe 87.7 1.1 3.9E-05 44.0 7.6 76 524-607 57-136 (293)
310 1uir_A Polyamine aminopropyltr 87.7 0.48 1.6E-05 48.7 5.0 81 523-611 76-161 (314)
311 3bwc_A Spermidine synthase; SA 87.6 0.5 1.7E-05 48.3 5.0 82 523-611 94-179 (304)
312 2oo3_A Protein involved in cat 87.6 0.22 7.5E-06 51.6 2.3 90 511-611 80-169 (283)
313 2pt6_A Spermidine synthase; tr 87.4 0.5 1.7E-05 48.9 4.9 80 523-610 115-198 (321)
314 2plw_A Ribosomal RNA methyltra 87.3 0.9 3.1E-05 42.1 6.2 55 523-588 21-76 (201)
315 3ckk_A TRNA (guanine-N(7)-)-me 87.3 0.67 2.3E-05 45.5 5.6 85 524-614 46-136 (235)
316 3ihp_A Ubiquitin carboxyl-term 87.3 1.6 5.3E-05 51.4 9.5 104 98-209 652-757 (854)
317 3c3y_A Pfomt, O-methyltransfer 87.1 1 3.4E-05 44.0 6.7 83 524-613 70-159 (237)
318 3i9f_A Putative type 11 methyl 86.8 1.4 4.8E-05 39.6 7.1 69 523-610 16-84 (170)
319 2oo9_A E3 ubiquitin-protein li 86.8 0.72 2.4E-05 35.6 4.2 37 15-52 7-43 (46)
320 3c3p_A Methyltransferase; NP_9 86.5 1.1 3.8E-05 42.2 6.4 78 525-613 57-138 (210)
321 2b2c_A Spermidine synthase; be 86.4 0.67 2.3E-05 48.0 5.2 80 523-610 107-190 (314)
322 2dna_A Unnamed protein product 86.3 0.59 2E-05 38.8 3.8 37 15-52 22-59 (67)
323 1qyr_A KSGA, high level kasuga 86.3 0.97 3.3E-05 45.3 6.2 82 524-613 21-102 (252)
324 2vdw_A Vaccinia virus capping 86.0 1.9 6.4E-05 44.1 8.3 47 523-571 47-93 (302)
325 2cp8_A NEXT to BRCA1 gene 1 pr 85.9 1.1 3.6E-05 35.9 4.9 39 98-138 9-48 (54)
326 3cbg_A O-methyltransferase; cy 85.9 1.2 4E-05 43.2 6.4 84 525-612 73-159 (232)
327 3ege_A Putative methyltransfer 85.8 0.4 1.4E-05 46.9 3.1 73 523-612 33-105 (261)
328 1sui_A Caffeoyl-COA O-methyltr 85.4 0.79 2.7E-05 45.2 5.0 83 524-613 79-168 (247)
329 3mq2_A 16S rRNA methyltransfer 85.3 0.63 2.1E-05 43.9 4.0 40 524-564 27-66 (218)
330 3d5l_A Regulatory protein RECX 85.2 2.8 9.7E-05 41.4 8.9 128 14-200 80-212 (221)
331 2i62_A Nicotinamide N-methyltr 85.0 0.76 2.6E-05 44.2 4.6 45 524-570 56-100 (265)
332 3m66_A Mterf3, mterf domain-co 84.8 2 6.7E-05 43.0 7.6 145 13-194 6-172 (270)
333 3dfg_A Xcrecx, regulatory prot 84.6 12 0.00042 35.0 12.5 118 15-193 37-158 (162)
334 1xj5_A Spermidine synthase 1; 84.5 0.67 2.3E-05 48.4 4.2 81 523-610 119-203 (334)
335 3uwp_A Histone-lysine N-methyl 84.3 1.7 5.8E-05 47.6 7.3 81 523-611 172-262 (438)
336 3gjy_A Spermidine synthase; AP 84.2 0.68 2.3E-05 48.5 4.0 78 524-610 89-168 (317)
337 2cwb_A Chimera of immunoglobul 83.9 1.1 3.6E-05 40.5 4.6 35 15-50 69-104 (108)
338 3r3h_A O-methyltransferase, SA 83.6 0.44 1.5E-05 46.9 2.2 85 525-613 61-148 (242)
339 1vlm_A SAM-dependent methyltra 83.2 0.75 2.6E-05 43.6 3.6 70 517-609 41-110 (219)
340 2cmg_A Spermidine synthase; tr 83.0 0.73 2.5E-05 46.4 3.6 73 523-609 71-147 (262)
341 3fzg_A 16S rRNA methylase; met 82.2 1.1 3.6E-05 44.5 4.3 49 523-572 48-96 (200)
342 3htx_A HEN1; HEN1, small RNA m 82.1 1.2 4.2E-05 52.7 5.4 44 524-567 721-764 (950)
343 3fpf_A Mtnas, putative unchara 82.0 2.5 8.7E-05 43.9 7.3 72 523-607 121-194 (298)
344 3e46_A Ubiquitin-conjugating e 81.8 1.7 5.9E-05 44.2 5.8 39 97-137 214-252 (253)
345 3ufb_A Type I restriction-modi 79.7 2 6.7E-05 47.8 5.8 83 525-611 218-312 (530)
346 1tte_A Ubiquitin-conjugating e 79.5 1.5 5.3E-05 43.5 4.4 28 99-126 170-197 (215)
347 3e3v_A Regulatory protein RECX 79.0 11 0.00038 35.8 10.2 125 13-196 36-165 (177)
348 1wj7_A Hypothetical protein (R 78.9 1.3 4.4E-05 39.7 3.3 38 172-211 41-79 (104)
349 4fsd_A Arsenic methyltransfera 78.6 1.9 6.6E-05 45.1 5.1 84 524-610 83-175 (383)
350 2r3s_A Uncharacterized protein 78.3 3.1 0.00011 41.8 6.3 79 523-614 164-245 (335)
351 3id6_C Fibrillarin-like rRNA/T 77.8 4.2 0.00014 40.4 7.0 80 523-610 75-155 (232)
352 2qsf_X RAD23, UV excision repa 77.7 2.4 8.4E-05 40.9 5.1 39 96-136 128-166 (171)
353 2zfu_A Nucleomethylin, cerebra 77.4 2.2 7.6E-05 39.9 4.7 68 512-609 56-123 (215)
354 1qzz_A RDMB, aclacinomycin-10- 76.6 7.5 0.00026 39.8 8.8 80 523-614 181-261 (374)
355 3orh_A Guanidinoacetate N-meth 76.5 1.9 6.5E-05 41.9 4.1 76 523-607 59-134 (236)
356 1boo_A Protein (N-4 cytosine-s 76.4 2.8 9.4E-05 43.3 5.5 43 524-569 252-294 (323)
357 1u2z_A Histone-lysine N-methyl 75.4 6.5 0.00022 42.7 8.3 41 523-565 241-282 (433)
358 4df3_A Fibrillarin-like rRNA/T 74.7 7.8 0.00027 38.7 8.0 81 523-611 76-157 (233)
359 1ixs_A Holliday junction DNA h 74.2 3 0.0001 33.8 3.9 33 172-204 19-54 (62)
360 3bkx_A SAM-dependent methyltra 74.0 3.4 0.00012 40.1 5.1 83 523-612 42-133 (275)
361 1x19_A CRTF-related protein; m 73.3 7.8 0.00027 39.7 7.9 64 522-587 188-252 (359)
362 2oxt_A Nucleoside-2'-O-methylt 73.0 1.6 5.5E-05 44.0 2.6 35 522-560 72-106 (265)
363 2kna_A Baculoviral IAP repeat- 72.5 3.7 0.00013 36.4 4.5 41 13-53 28-74 (104)
364 1nt2_A Fibrillarin-like PRE-rR 72.4 7.6 0.00026 37.1 7.1 78 523-608 56-133 (210)
365 3hp7_A Hemolysin, putative; st 71.9 2.2 7.6E-05 44.1 3.4 36 524-561 85-120 (291)
366 1tw3_A COMT, carminomycin 4-O- 71.0 10 0.00035 38.6 8.1 80 523-614 182-262 (360)
367 2a14_A Indolethylamine N-methy 70.1 1.2 4.1E-05 43.8 0.9 45 524-570 55-99 (263)
368 1eg2_A Modification methylase 69.1 3.4 0.00012 42.9 4.0 44 523-569 241-287 (319)
369 3opn_A Putative hemolysin; str 68.9 2.9 0.0001 41.1 3.4 40 523-564 36-75 (232)
370 1i4w_A Mitochondrial replicati 67.3 6.6 0.00023 41.6 5.9 60 525-588 59-118 (353)
371 3k9o_A Ubiquitin-conjugating e 66.7 3.7 0.00013 40.0 3.5 27 171-197 164-190 (201)
372 3p2e_A 16S rRNA methylase; met 63.6 9.2 0.00031 37.0 5.7 64 524-588 24-91 (225)
373 1cuk_A RUVA protein; DNA repai 63.3 7.9 0.00027 38.0 5.2 39 98-136 160-199 (203)
374 4e2x_A TCAB9; kijanose, tetron 61.5 12 0.00042 39.0 6.6 41 523-566 106-146 (416)
375 3sso_A Methyltransferase; macr 61.5 6.9 0.00024 42.7 4.7 74 523-607 215-294 (419)
376 3c1d_A Protein ORAA, regulator 61.5 60 0.0021 30.0 10.7 119 14-193 24-156 (159)
377 4fp9_B Mterf domain-containing 61.0 16 0.00056 38.4 7.4 88 98-195 46-138 (335)
378 2p41_A Type II methyltransfera 60.9 2.9 9.9E-05 43.0 1.6 32 522-557 80-111 (305)
379 1tte_A Ubiquitin-conjugating e 58.8 5.6 0.00019 39.4 3.2 27 172-198 171-197 (215)
380 2ztd_A Holliday junction ATP-d 57.6 14 0.00049 36.5 5.9 40 98-137 164-206 (212)
381 2kna_A Baculoviral IAP repeat- 55.9 18 0.00063 31.9 5.7 43 99-141 28-75 (104)
382 2dhy_A CUE domain-containing p 55.7 15 0.00051 30.3 4.7 37 15-53 21-60 (67)
383 4auk_A Ribosomal RNA large sub 55.1 11 0.00039 40.4 5.0 74 522-613 209-282 (375)
384 3ua3_A Protein arginine N-meth 54.8 5.2 0.00018 46.5 2.5 88 517-609 399-503 (745)
385 2xyq_A Putative 2'-O-methyl tr 54.6 12 0.00041 38.5 4.9 66 522-611 61-133 (290)
386 3dfg_A Xcrecx, regulatory prot 54.1 16 0.00056 34.1 5.4 77 13-124 85-161 (162)
387 2qsf_X RAD23, UV excision repa 51.2 10 0.00035 36.6 3.6 31 170-200 130-160 (171)
388 3frh_A 16S rRNA methylase; met 50.9 17 0.00057 37.2 5.2 44 523-570 104-147 (253)
389 2pwq_A Ubiquitin conjugating e 49.5 3.5 0.00012 40.9 0.0 38 98-137 177-214 (216)
390 3lcv_B Sisomicin-gentamicin re 49.1 12 0.00042 38.7 3.9 48 523-571 131-178 (281)
391 1wg8_A Predicted S-adenosylmet 48.9 28 0.00095 36.1 6.6 76 525-612 23-100 (285)
392 3e46_A Ubiquitin-conjugating e 48.3 11 0.00039 38.2 3.5 27 171-197 216-242 (253)
393 2dpm_A M.dpnii 1, protein (ade 48.1 9.9 0.00034 38.9 3.1 44 518-566 28-72 (284)
394 2w84_A Peroxisomal membrane pr 46.9 21 0.0007 29.9 4.2 30 98-127 35-64 (70)
395 2g1p_A DNA adenine methylase; 45.6 8.6 0.0003 39.1 2.2 46 517-567 20-65 (278)
396 3mva_O Transcription terminati 45.2 28 0.00096 36.0 6.0 16 179-194 249-264 (343)
397 2wa2_A Non-structural protein 42.6 8.9 0.0003 38.8 1.7 35 522-560 80-114 (276)
398 3t6p_A Baculoviral IAP repeat- 41.6 23 0.0008 37.3 4.8 41 13-53 120-166 (345)
399 4fs3_A Enoyl-[acyl-carrier-pro 41.5 34 0.0012 33.5 5.7 66 538-608 24-93 (256)
400 3cvo_A Methyltransferase-like 40.3 62 0.0021 31.5 7.3 59 524-587 30-92 (202)
401 1cuk_A RUVA protein; DNA repai 40.2 19 0.00065 35.3 3.6 33 172-204 162-195 (203)
402 3mcz_A O-methyltransferase; ad 39.7 43 0.0015 33.8 6.4 82 524-614 179-261 (352)
403 4gqb_A Protein arginine N-meth 39.4 17 0.00059 41.5 3.6 72 525-606 358-433 (637)
404 2w84_A Peroxisomal membrane pr 38.7 28 0.00096 29.1 3.8 28 172-199 37-64 (70)
405 1yf3_A DNA adenine methylase; 38.5 9 0.00031 38.5 1.0 46 516-567 16-61 (259)
406 3c6k_A Spermine synthase; sper 37.5 65 0.0022 34.6 7.5 81 526-612 207-295 (381)
407 1ixr_A Holliday junction DNA h 35.7 7.8 0.00027 37.8 0.0 34 99-132 147-183 (191)
408 3e3v_A Regulatory protein RECX 35.3 40 0.0014 32.0 4.9 80 13-125 87-166 (177)
409 2ip2_A Probable phenazine-spec 35.1 37 0.0013 34.0 4.9 77 526-614 169-246 (334)
410 3m66_A Mterf3, mterf domain-co 34.5 1.2E+02 0.0041 29.9 8.5 24 14-37 78-101 (270)
411 3ff5_A PEX14P, peroxisomal bio 33.0 37 0.0013 27.0 3.5 25 98-122 30-54 (54)
412 3c1d_A Protein ORAA, regulator 32.4 54 0.0019 30.4 5.2 76 12-122 82-157 (159)
413 2ztd_A Holliday junction ATP-d 32.1 34 0.0012 33.9 3.9 34 172-205 166-202 (212)
414 3ged_A Short-chain dehydrogena 32.0 35 0.0012 34.0 4.1 61 538-608 18-82 (247)
415 2g72_A Phenylethanolamine N-me 31.2 21 0.00073 35.0 2.3 43 524-569 71-114 (289)
416 4fn4_A Short chain dehydrogena 30.8 46 0.0016 33.3 4.8 63 539-607 24-90 (254)
417 1xu9_A Corticosteroid 11-beta- 30.4 1.2E+02 0.004 29.6 7.6 97 504-606 3-111 (286)
418 2k4m_A TR8_protein, UPF0146 pr 29.9 31 0.001 32.8 3.0 39 521-562 32-72 (153)
419 2bm8_A Cephalosporin hydroxyla 29.1 32 0.0011 33.3 3.2 73 525-607 82-158 (236)
420 3d5l_A Regulatory protein RECX 28.8 39 0.0013 33.2 3.7 82 12-126 129-210 (221)
421 3gwz_A MMCR; methyltransferase 27.8 1.1E+02 0.0038 31.4 7.2 81 523-615 201-282 (369)
422 1q02_A Sequestosome 1; helical 26.0 77 0.0026 25.1 4.1 36 98-135 10-47 (52)
423 3ff5_A PEX14P, peroxisomal bio 26.0 48 0.0017 26.3 3.0 23 172-194 32-54 (54)
424 2aot_A HMT, histamine N-methyl 24.6 1.5E+02 0.0051 29.0 7.2 46 524-569 52-102 (292)
425 4b79_A PA4098, probable short- 23.7 47 0.0016 33.2 3.3 57 539-607 28-84 (242)
426 4g81_D Putative hexonate dehyd 23.1 80 0.0028 31.5 4.9 65 539-609 26-94 (255)
427 1wgl_A TOLL-interacting protei 22.5 78 0.0027 25.2 3.7 37 15-53 12-51 (59)
428 1ixr_A Holliday junction DNA h 21.6 19 0.00067 34.9 0.0 32 172-203 148-182 (191)
429 3oig_A Enoyl-[acyl-carrier-pro 21.3 1.3E+02 0.0045 28.8 5.9 67 538-609 25-95 (266)
430 3f1l_A Uncharacterized oxidore 20.5 1.2E+02 0.0042 29.0 5.5 66 540-608 30-99 (252)
431 2pwq_A Ubiquitin conjugating e 20.2 22 0.00074 35.2 0.0 27 172-198 179-205 (216)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.92 E-value=5.5e-26 Score=234.17 Aligned_cols=105 Identities=17% Similarity=0.342 Sum_probs=93.3
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV 605 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV 605 (658)
|+||||||||||+++||+++|| ++++++|+|+.|++||+.+|. ..++.+||++|+.+++ +++|||
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence 6899999999999999999998 579999999999999998653 2367899999998765 579999
Q ss_pred EecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 606 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 606 IGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+||||||+||.+|+ ++|++|+|+.||++|+|+|+++||+.
T Consensus 66 ~ggpPCQ~fS~ag~------------~~g~~d~R~~L~~~~~r~i~~~~Pk~ 105 (331)
T 3ubt_Y 66 IGGPPSQSWSEGGS------------LRGIDDPRGKLFYEYIRILKQKKPIF 105 (331)
T ss_dssp ECCCCGGGTEETTE------------ECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred EecCCCCCcCCCCC------------ccCCCCchhHHHHHHHHHHhccCCeE
Confidence 99999999998753 46789999999999999999999974
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=225.65 Aligned_cols=117 Identities=22% Similarity=0.371 Sum_probs=101.9
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
...+.+++||||||||||+++||+++||++++++++|+|+.|+++|+.+|. ++.++.+||++++.+++.. .
T Consensus 11 ~~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~ 81 (295)
T 2qrv_A 11 AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----W 81 (295)
T ss_dssp CCCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----T
T ss_pred cccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----c
Confidence 345678999999999999999999999988779999999999999988653 3446789999999987754 3
Q ss_pred CCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172 600 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656 (658)
Q Consensus 600 g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~ 656 (658)
+++|||+||||||+||.+|+ ++.|++|+|+.||++|+|+|+++||+
T Consensus 82 ~~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 82 GPFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CCcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence 68999999999999998863 23678999999999999999999987
No 3
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.88 E-value=2.1e-23 Score=219.47 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
++++|||||||||+++||+++|+.+++++++|+|+.|+++|+.+|.. ..++.+||++++.+++.. ..+||
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~ 72 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT 72 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence 57899999999999999999999888999999999999999987643 335689999999988754 26999
Q ss_pred EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-ccc
Q 006172 605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMK 657 (658)
Q Consensus 605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK-~~~ 657 (658)
|+||||||+||.+|+ +.|++|+|+.||++|+|+|+++| |++
T Consensus 73 l~ggpPCQ~fS~ag~------------~~~~~d~r~~L~~~~~r~i~~~~~P~~ 114 (333)
T 4h0n_A 73 ILMSPPCQPFTRNGK------------YLDDNDPRTNSFLYLIGILDQLDNVDY 114 (333)
T ss_dssp EEECCCCCCSEETTE------------ECCTTCTTSCCHHHHHHHGGGCTTCCE
T ss_pred EEecCCCcchhhhhh------------ccCCcCcccccHHHHHHHHHHhcCCCE
Confidence 999999999998753 35688999999999999999997 863
No 4
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.88 E-value=2.1e-23 Score=219.13 Aligned_cols=118 Identities=18% Similarity=0.317 Sum_probs=98.5
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeE-EEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172 517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~v-vavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
+|.++...++++|||||||||+++||+++||+++++ +++|+|+.|++||+.+|..+ ++.+||++++.++|..
T Consensus 2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~- 74 (327)
T 3qv2_A 2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES- 74 (327)
T ss_dssp ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence 456666778999999999999999999999877889 99999999999999877432 5689999999988754
Q ss_pred hhccCCccEEEecCCCCCc--ccCCCCCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hccc
Q 006172 596 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSMK 657 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPCQ~F--S~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~R-IV~~v--K~~~ 657 (658)
.++|||+||||||+| |.+|+ ++|++|+|+.||++|+| +|+++ ||++
T Consensus 75 ----~~~Dil~ggpPCQ~fs~S~ag~------------~~~~~d~r~~L~~~~~r~~i~~~~~~P~~ 125 (327)
T 3qv2_A 75 ----LNCNTWFMSPPCQPYNNSIMSK------------HKDINDPRAKSVLHLYRDILPYLINKPKH 125 (327)
T ss_dssp ----TCCCEEEECCCCTTCSHHHHTT------------TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred ----CCCCEEEecCCccCcccccCCC------------CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence 279999999999999 87653 46788999999999999 99999 7763
No 5
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.88 E-value=2.9e-23 Score=228.35 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=88.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL 595 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~--------I-e~l 595 (658)
++++|||||||||+++||+++|+ ++++++|+|+.|++||+.+|... ++..++.+||++++... + ..+
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i 163 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHI 163 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhh
Confidence 58999999999999999999997 57999999999999999987422 34456679999887432 1 111
Q ss_pred hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006172 596 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~-D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
....+++|||+||||||+||.+|+.++. ..+.+.|+. |+|+.||++|+|+|+.+||++
T Consensus 164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~----~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~ 222 (482)
T 3me5_A 164 RQHIPEHDVLLAGFPCQPFSLAGVSKKN----SLGRAHGFACDTQGTLFFDVVRIIDARRPAM 222 (482)
T ss_dssp HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred hhcCCCCCEEEecCCCcchhhhCccccc----ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence 2345789999999999999998863220 012335665 899999999999999999974
No 6
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.87 E-value=9.6e-23 Score=217.58 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=92.7
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+++||||||||||+++||+++|+ +++++||+|+.|+++|+.+|. ...++.+||++++.+++.......+.+||
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 48999999999999999999997 579999999999999998653 33467899999998877543223478999
Q ss_pred EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
|+||||||+||.+|+ ++.+|+|+.||++|+|+|+++||++
T Consensus 75 i~ggpPCQ~fS~ag~-------------~~~~d~r~~L~~~~~~~v~~~~P~~ 114 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGK-------------GNPDDSRNQLYMHFYRLVSELQPLF 114 (376)
T ss_dssp EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCCCCcccccC-------------CCCCCchHHHHHHHHHHHHHhCCCE
Confidence 999999999998754 2578999999999999999999974
No 7
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.87 E-value=2.8e-22 Score=210.23 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=92.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.++++||||||+||+++||+++|+ +++++||+|+.|+++|+.+|... . .+||+++..+.+ +++|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence 568999999999999999999998 57999999999999999987532 1 689999987654 4699
Q ss_pred EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
||+||||||+||.+|+ +.|++|+|+.||++|+|+|+++||++
T Consensus 74 ~l~~gpPCQ~fS~ag~------------~~g~~d~r~~L~~~~~r~i~~~~P~~ 115 (327)
T 2c7p_A 74 ILCAGFPCQAFSISGK------------QKGFEDSRGTLFFDIARIVREKKPKV 115 (327)
T ss_dssp EEEEECCCTTTCTTSC------------CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred EEEECCCCCCcchhcc------------cCCCcchhhHHHHHHHHHHHhccCcE
Confidence 9999999999998764 35688999999999999999999964
No 8
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=1.3e-22 Score=232.84 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=96.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES---- 594 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~---- 594 (658)
.++++|||||||||||++||+++|. .+++++|||+|+.|++||+.|+ +.+.+...||.++....++.
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence 4569999999999999999999982 2478999999999999998854 44456678887664332211
Q ss_pred --------------------------------------------------------------------------------
Q 006172 595 -------------------------------------------------------------------------------- 594 (658)
Q Consensus 595 -------------------------------------------------------------------------------- 594 (658)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------hhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 595 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 595 --------l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+....|++|||+||||||+||.+|+++ +...+++|+|+.||++|+|+|+++||+.
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~ 427 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY 427 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence 111236899999999999999998642 2335688999999999999999999974
No 9
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.86 E-value=3e-22 Score=210.73 Aligned_cols=111 Identities=17% Similarity=0.347 Sum_probs=81.4
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+++|||||||+||+++||+++|+++++++++|+|+.|+++|+.+|.. ..++.+||++++.+.+... .+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~~-----~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDRL-----SFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHHH-----CCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCcC-----CcCE
Confidence 47899999999999999999998778999999999999999987643 2356899999988766432 6999
Q ss_pred EEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--ccc
Q 006172 605 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SMK 657 (658)
Q Consensus 605 VIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK--~~~ 657 (658)
|+||||||+||.+|+ +.|++|+|+.||++|+|+|+++| |++
T Consensus 72 l~~gpPCq~fS~ag~------------~~g~~d~r~~l~~~~~~~i~~~~~~P~~ 114 (343)
T 1g55_A 72 ILMSPPCQPFTRIGR------------QGDMTDSRTNSFLHILDILPRLQKLPKY 114 (343)
T ss_dssp EEECCC------------------------------CHHHHHHHHGGGCSSCCSE
T ss_pred EEEcCCCcchhhcCC------------cCCccCccchHHHHHHHHHHHhcCCCCE
Confidence 999999999998754 35788999999999999999998 753
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.84 E-value=1e-21 Score=211.85 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=90.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceee----EEEeeCCHHHHHHHHHHhhhcCCC---------------CC-c-----
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------GE-L----- 578 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~----vvavEid~~a~~t~k~~~~~~n~~---------------g~-l----- 578 (658)
.+++||||||||||+++||+++|+++++ +++||+|+.|+++|+++|...... +. .
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~ 88 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG 88 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence 4689999999999999999999976666 999999999999999988643100 00 0
Q ss_pred --------------------cccccccccChhhHHHhhhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCC-
Q 006172 579 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD- 637 (658)
Q Consensus 579 --------------------~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D- 637 (658)
...+||++++..+++ +.+|||+||||||+||.+|+ +.|++|
T Consensus 89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~------------~~g~~d~ 150 (403)
T 4dkj_A 89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL------------QKGIDKE 150 (403)
T ss_dssp HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC------------CCCCCGG
T ss_pred cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC------------CCCCCcc
Confidence 024888888876553 35899999999999998764 356776
Q ss_pred --CCcchHHHHHHHHHH
Q 006172 638 --FDFSLYYEFVRVVQR 652 (658)
Q Consensus 638 --~Rs~Lf~Ey~RIV~~ 652 (658)
+|+.||++|+|+|++
T Consensus 151 ~~~r~~L~~~~~rii~~ 167 (403)
T 4dkj_A 151 LNTRSGLLWEIERILEE 167 (403)
T ss_dssp GCCSGGGHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHH
Confidence 999999999999998
No 11
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.77 E-value=1.3e-19 Score=213.53 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=93.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----Hh--
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----SL-- 595 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie----~l-- 595 (658)
...++++|||||||||+++||++|||. ++++++|||+.|+.||+.||. ++.++.+||++|....+. ..
T Consensus 537 ~~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~ 610 (1002)
T 3swr_A 537 KLPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRG 610 (1002)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred cCCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhh
Confidence 346799999999999999999999982 679999999999999988653 445667888776432111 10
Q ss_pred --hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 596 --IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 596 --~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+...+.+|||+||||||+||.+|+.. ..+..|+|+.||++|+|+|+++||.+
T Consensus 611 ~~lp~~~~vDll~GGpPCQ~FS~ag~~~----------~~~~~d~R~~L~~~~~riv~~~rPk~ 664 (1002)
T 3swr_A 611 QRLPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 664 (1002)
T ss_dssp CBCCCTTTCSEEEECCCCTTCCSSSCCC----------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred hhcccCCCeeEEEEcCCCcchhhhCCCC----------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence 11235799999999999999887521 12356889999999999999999864
No 12
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.76 E-value=2.4e-19 Score=180.49 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=70.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+++|||||||||| ||+++||++ + .|+++..++.+||++|+.++|+. ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 56899999999998 899999963 1 13445556789999999988764 47899
Q ss_pred EEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172 604 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656 (658)
Q Consensus 604 LVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~ 656 (658)
||+||||||+||.+ ++|++||++|+|||+++||+
T Consensus 84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk 117 (230)
T 2qrv_B 84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 117 (230)
T ss_dssp EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence 99999999999964 25889999999999999997
No 13
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.76 E-value=1.3e-19 Score=218.17 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=91.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----H----h
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L 595 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie----~----l 595 (658)
.++++|||||||||+++||++||| .++++++|+|+.|++||+.+|. ++.++.+||.++....+. . .
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 568999999999999999999998 3679999999999999998653 334567787766432210 0 0
Q ss_pred hhccCCccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006172 596 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK 657 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~~ 657 (658)
+...+.+|||+||||||+||.+|+.+ ..+..|+|+.||++|+|+|+.+||++
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~~----------~~~~~d~R~~L~~~~lriv~~~rPk~ 975 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRFN----------SRTYSKFKNSLVVSFLSYCDYYRPRF 975 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCCC----------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred ccccCccceEEecCCCcccccccccc----------cccccchhhHHHHHHHHHHHHhcCcE
Confidence 11235799999999999999887521 12356889999999999999999864
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.71 E-value=4.9e-18 Score=181.54 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=74.0
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
-..+++|||||||||| ||++|||++ ..|+++..++.+||++|+.++|+. +++
T Consensus 186 ~~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~ 237 (386)
T 2pv0_B 186 RRQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGP 237 (386)
T ss_dssp GCCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCC
T ss_pred hhcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCC
Confidence 3456999999999997 999999963 135555566789999999987754 478
Q ss_pred ccEEEecCCCCCcccCCCCCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006172 602 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 656 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS~anr~~r~G~~~~~~~r~Gl~D~Rs~Lf~Ey~RIV~~vK~~ 656 (658)
+|||+||||||+||.+ |+|++||++|+|||+++||+
T Consensus 238 ~DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk 273 (386)
T 2pv0_B 238 FDLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK 273 (386)
T ss_dssp CSEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred CCEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence 9999999999999964 36889999999999999996
No 15
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=146.89 Aligned_cols=158 Identities=20% Similarity=0.303 Sum_probs=116.7
Q ss_pred ccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCCcCCCC-CCCCcccccccCCCccCCCcC
Q 006172 333 YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWPSWD 411 (658)
Q Consensus 333 fF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R~~~~p-~~p~ti~e~lp~~~~~wp~wd 411 (658)
||++|||..+-...+.+|.++|. ..+.++||+.|.||+|+|.||.++|...+....+ .+.+|++|+|...+.+
T Consensus 135 ~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~----- 208 (295)
T 2qrv_A 135 FWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA----- 208 (295)
T ss_dssp EEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE-----
T ss_pred EEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc-----
Confidence 78999999998888888999996 6999999999999999999999999876532211 1368999999765432
Q ss_pred CCcccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccC
Q 006172 412 TRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAA 491 (658)
Q Consensus 412 ~r~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~ 491 (658)
...++++|++.+..+. ..++ +.+-. ..+++.+.|++.|+.||+|||++|+-.+
T Consensus 209 ~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~~~~ 261 (295)
T 2qrv_A 209 KFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYTDVS 261 (295)
T ss_dssp SSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTTCCT
T ss_pred ccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHeeCC
Confidence 2345556654321110 0000 00111 2346789999999999999999999988
Q ss_pred CCChHHHHHhhhhhhcccchhhhcccccccCC
Q 006172 492 GNSLTARLESLRHCFQTDTLGYHLSVLKSMFP 523 (658)
Q Consensus 492 ~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~ 523 (658)
+++.++++|.+||++.++.+.++...|+.++.
T Consensus 262 ~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~ 293 (295)
T 2qrv_A 262 NMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA 293 (295)
T ss_dssp TCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred CcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988887653
No 16
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.40 E-value=5.4e-14 Score=148.07 Aligned_cols=177 Identities=13% Similarity=0.124 Sum_probs=114.2
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-cccccccccc----ccCCCC--------CCcCCCCC
Q 006172 330 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE 391 (658)
Q Consensus 330 ~ppfF~feNV~~~~~-~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~----hNLP~~--------~R~~~~p~ 391 (658)
+|.||++|||..+-. ..|..|.+.| |.++..++||.+| .||+|+|.|+ ..++.. ..+|..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 399999999998864 3577777777 7889999999999 9999999997 222211 01121112
Q ss_pred CCCcccccccC-----------CCccCCCcCCCcc--cce--ecccCC------ch-h-----HHHHHHHHHHhhccCCC
Q 006172 392 PPMTIQDAIPH-----------TKKWWPSWDTRKH--LSC--INSGTS------GI-S-----QLCERFEKLLRDSRGVL 444 (658)
Q Consensus 392 ~p~ti~e~lp~-----------~~~~wp~wd~r~k--~~c--i~t~~~------~~-~-----~l~~~i~~~~~~~~~~~ 444 (658)
.+.+|.|+|.. +.+||..+|-.+. .+| .+..+. ++ . ...+++-+.+....+ .
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G 269 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G 269 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence 26789999852 1246666663222 222 111110 00 0 011122221111100 0
Q ss_pred chhhhHHHHHhhcccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccc
Q 006172 445 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK 519 (658)
Q Consensus 445 ~~~~q~~il~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK 519 (658)
.+.+ +.+..+.++++|+|.|++||+|||++||-...++.++|||.+||+..|++++++.+.|.
T Consensus 270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~ 332 (333)
T 4h0n_A 270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332 (333)
T ss_dssp -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 1111 12234678999999999999999999998778999999999999999999999987763
No 17
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.36 E-value=2.2e-13 Score=143.22 Aligned_cols=178 Identities=15% Similarity=0.156 Sum_probs=119.1
Q ss_pred CCCccccccccccch-hhHHHHhhhh----ccCCceeeccccc-cccccccccc-ccCCCCCCcCCC--CCCCCcccccc
Q 006172 330 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI 400 (658)
Q Consensus 330 ~ppfF~feNV~~~~~-~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~-hNLP~~~R~~~~--p~~p~ti~e~l 400 (658)
+|.||++|||..+-. ..|..|.+.| |.++..++||.+| .||+|+|.|+ +.... -.+|.. +.+..+|+|+|
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L 200 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL 200 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence 799999999998865 4677777777 7789999999999 9999999994 44433 122221 11358899998
Q ss_pred cC--------CCccCCCcCCC--------cccceecccCCchhHHHHHHHHHHhhccCCCchhhhHHHHHhhcccceeee
Q 006172 401 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV 464 (658)
Q Consensus 401 p~--------~~~~wp~wd~r--------~k~~ci~t~~~~~~~l~~~i~~~~~~~~~~~~~~~q~~il~~c~~~nlvW~ 464 (658)
+. ..+||..|... ++-.|.|..+ ++. ....++.+.... -......++++.
T Consensus 201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y---~~y-------~~~~gs~l~~~~----~~~~~~~~~~~~ 266 (327)
T 3qv2_A 201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSY---TKI-------VEGTGSIYCPIE----PHFIPVKKAEDL 266 (327)
T ss_dssp CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTT---TTS-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred cccccccccCCHHHHHhhhcccccccccccccccccccc---eEE-------ecCCCceeeccc----ccccccCCceee
Confidence 62 23344443321 1112322211 000 001111110000 000112356677
Q ss_pred cccccCCCChhhHHHHhcCCCCCccc-CCCChHHHHHhhhhhhcccchhhhcccccccC
Q 006172 465 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF 522 (658)
Q Consensus 465 g~~~~~ple~~E~E~i~GfP~~~Tr~-~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~f 522 (658)
.+++++.|+|.|+.||+|||.+|+-. .+++.+++||.+||++.+++++++...|+++.
T Consensus 267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l 325 (327)
T 3qv2_A 267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325 (327)
T ss_dssp TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence 88999999999999999999999977 68999999999999999999999988887653
No 18
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.29 E-value=5.2e-13 Score=122.16 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCC
Q 006172 9 SSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKE 88 (658)
Q Consensus 9 ssS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~ 88 (658)
|.|...++.+|++||||+++|.||++.+|. |+++++|+|++|+.|++.+-.+.+. +... .....+
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~---------e~~l-~~~~~~---- 69 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLV---------EEAL-EMHQCS---- 69 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHH---------HHHH-HHCSSC----
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhh---------HHHH-HhccCC----
Confidence 344567999999999999999999999999 9999999999999987654321100 0000 000000
Q ss_pred CCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 89 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 89 e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
.....++.++++.|+.|||+++.|.+|+.+++.+ ++.=+|.|++.-
T Consensus 70 ---~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~ 115 (118)
T 4ae4_A 70 ---EEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMARA 115 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred ---ccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence 0002235568999999999999999999999887 588999998863
No 19
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=98.82 E-value=1e-09 Score=118.58 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=111.2
Q ss_pred cCCCCccccccccccchh----hHHHHhhhh----ccCCceeeccccc-ccccccccccc------cCCCCCCc---CCC
Q 006172 328 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIP 389 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~~----~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~h------NLP~~~R~---~~~ 389 (658)
..+|.||++|||..+-.. .|..|.+.| |.+.+.++||.+| .||+|.|.|+= ..|..... .++
T Consensus 175 ~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~ 254 (403)
T 4dkj_A 175 EEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKV 254 (403)
T ss_dssp GGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGC
T ss_pred ccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCcccccccccc
Confidence 378999999999998653 566776666 6689999999999 99999999962 12221111 111
Q ss_pred CCCCCcccccccCC--Ccc-------CCC-cCCCcccceecc-cCCchhHHHHHHHHHHhhccC-CCchhhhHHHHHhhc
Q 006172 390 PEPPMTIQDAIPHT--KKW-------WPS-WDTRKHLSCINS-GTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSE 457 (658)
Q Consensus 390 p~~p~ti~e~lp~~--~~~-------wp~-wd~r~k~~ci~t-~~~~~~~l~~~i~~~~~~~~~-~~~~~~q~~il~~c~ 457 (658)
..++.+|.|+|... .++ .|. ..++.++.+..+ ......+ + +++.. ..+ .++... .+.
T Consensus 255 ~~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~v~~-~~~~~~Tlt~------~~~ 323 (403)
T 4dkj_A 255 KNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNS--E--NYVYN-INGIGPTLTA------SGA 323 (403)
T ss_dssp CCCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGG--G--SEEEE-TTSBBCCCCS------SSG
T ss_pred ccccccHHHHhccccccccchhhhhccccccccccchhcccccccccccc--C--cceec-CCCcccceec------CCC
Confidence 22357999999733 111 111 011111111100 0000000 0 00000 000 000000 011
Q ss_pred ccceeeecccccCCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHhhhhhhcccchhhhcccccccCCC
Q 006172 458 KLNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG 524 (658)
Q Consensus 458 ~~nlvW~g~~~~~ple~~E~E~i~GfP~-~~Tr~~--~-ls~teR~k~Lgnsfqvdti~~~lsvLK~~f~~ 524 (658)
..-++-....+++.|+|.|+.||+|||+ +|.... + ++.+++||.+||+..|+++..++..|+..+..
T Consensus 324 ~~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~ 394 (403)
T 4dkj_A 324 NSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE 394 (403)
T ss_dssp GGSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred CceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence 1122223457899999999999999999 677653 3 79999999999999999999999888876644
No 20
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.81 E-value=4.6e-10 Score=115.45 Aligned_cols=192 Identities=18% Similarity=0.173 Sum_probs=101.5
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-cccccccccc----ccCCCCCCcCCCCCCCC
Q 006172 328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM 394 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~----hNLP~~~R~~~~p~~p~ 394 (658)
..+|.||++|||..+-. ..+..|-+.| |.+.+.++||++| .||+|+|.|+ ..++..--+|.--....
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 45899999999987743 4566666666 6799999999999 9999999997 33333222122111256
Q ss_pred cccccccCCC-ccCCCcCCCcc--cceecccC----C---chhHHHHHHHHH------HhhccCCCc-hhhhHHHHHhhc
Q 006172 395 TIQDAIPHTK-KWWPSWDTRKH--LSCINSGT----S---GISQLCERFEKL------LRDSRGVLS-SQQQRDILHRSE 457 (658)
Q Consensus 395 ti~e~lp~~~-~~wp~wd~r~k--~~ci~t~~----~---~~~~l~~~i~~~------~~~~~~~~~-~~~q~~il~~c~ 457 (658)
|+.|++.... .-+|.+++... ..++.... . .......+++.. +...+.... ....+.+...++
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK 259 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence 7777762110 11111111000 00000000 0 000000000000 000000000 000000001111
Q ss_pred ccceee-ecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172 458 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 520 (658)
Q Consensus 458 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~ 520 (658)
..+-.+ ..+++.+.|++.|+.||+|||++|+= ...+.++++|.+||+..+....++...++.
T Consensus 260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f-~~~s~~~~ykqiGNAVpp~la~~I~~~I~~ 322 (331)
T 3ubt_Y 260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPVNLAYEIAKTIKS 322 (331)
T ss_dssp TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCC-CCSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEe-CCCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence 111111 13456799999999999999999972 145899999999999998887777665543
No 21
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=98.73 E-value=1.1e-08 Score=113.02 Aligned_cols=177 Identities=13% Similarity=0.242 Sum_probs=105.4
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCC---------ceeeccccccccccccccc----ccCCCCCCc
Q 006172 328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF 386 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~---------Pe~vds~~fsaa~R~r~y~----hNLP~~~R~ 386 (658)
..+|.||++|||..+-. ..|..|-+-| |.+. +.++||++|.||+|+|.|+ .+++....|
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F 296 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF 296 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence 46899999999999854 3566676666 4454 7899999999999999997 244433333
Q ss_pred C------CCCCCCCcccccccCCCccCCCcCCCcccceecccCCchhHHHHHHHHHH----hhccCC----CchhhhHHH
Q 006172 387 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLL----RDSRGV----LSSQQQRDI 452 (658)
Q Consensus 387 ~------~~p~~p~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~~i~~~~----~~~~~~----~~~~~q~~i 452 (658)
. ..|.++.||.|+|.... + .|. ..+ .++-+.+.+.- .+-+++ .......
T Consensus 297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~-- 359 (482)
T 3me5_A 297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ-- 359 (482)
T ss_dssp CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence 2 24555678999985211 0 000 000 11111111100 000010 0000000
Q ss_pred HHhhcc---------cce-e---e-------------ecccccCCCChhhHHHHhcCCCCCcc--cCCCChHHHHHhhhh
Q 006172 453 LHRSEK---------LNL-V---W-------------VGAYKLGPVDPEHIELILGYPSNHTQ--AAGNSLTARLESLRH 504 (658)
Q Consensus 453 l~~c~~---------~nl-v---W-------------~g~~~~~ple~~E~E~i~GfP~~~Tr--~~~ls~teR~k~Lgn 504 (658)
..|+. .++ + | ....+++.|+|.|+.||+|||...++ .+.++.+.+||.+||
T Consensus 360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN 438 (482)
T 3me5_A 360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN 438 (482)
T ss_dssp -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence 00100 011 1 1 01357899999999999999953322 357899999999999
Q ss_pred hhcccchhhhcccccccC
Q 006172 505 CFQTDTLGYHLSVLKSMF 522 (658)
Q Consensus 505 sfqvdti~~~lsvLK~~f 522 (658)
+..++++..+...|+.++
T Consensus 439 sV~v~v~~~i~~~l~~~l 456 (482)
T 3me5_A 439 SVVVPVFAAVAKLLEPKI 456 (482)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHH
Confidence 999999999888776643
No 22
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=98.72 E-value=1e-08 Score=107.61 Aligned_cols=182 Identities=13% Similarity=0.119 Sum_probs=104.7
Q ss_pred CCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccccCC-CCCC-cCCCCCC---CC
Q 006172 329 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM 394 (658)
Q Consensus 329 ~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~hNLP-~~~R-~~~~p~~---p~ 394 (658)
.+|.||++|||..+-. ..|..|.+.| |.+...++||..| .||+|+|.|+=-.- ..+. ....|.| ..
T Consensus 111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~ 190 (327)
T 2c7p_A 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT 190 (327)
T ss_dssp HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence 5899999999998864 3566776666 7788999999999 99999999984321 1110 1123332 57
Q ss_pred cccccccCC--CccCC-C-----cCCCcccceecccCCchhHHHH-HHHHHHhhcc-CCCchhhhHHHHHh----hcc-c
Q 006172 395 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLCE-RFEKLLRDSR-GVLSSQQQRDILHR----SEK-L 459 (658)
Q Consensus 395 ti~e~lp~~--~~~wp-~-----wd~r~k~~ci~t~~~~~~~l~~-~i~~~~~~~~-~~~~~~~q~~il~~----c~~-~ 459 (658)
|+.|+|... ..+|. + |.-..+....... ....+.. .... ..+.. +.+... |... +.+ .
T Consensus 191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~T----i~~~~~~~~~~~~ 263 (327)
T 2c7p_A 191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVGKGGQG-ERIYSTRGIAIT----LSAYGGGIFAKTG 263 (327)
T ss_dssp CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEESTTCCTT-CEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhccCCccc-cccccCCCCcCc----eecCCCCccCCCC
Confidence 899998421 11111 1 0000000000000 0000000 0000 00000 001000 0000 111 1
Q ss_pred ceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhccccccc
Q 006172 460 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM 521 (658)
Q Consensus 460 nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~~ 521 (658)
+.+. +.+.+.|++.|+.||+|||++|+- ..+.++++|.+||+..+....++...|+..
T Consensus 264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~ 321 (327)
T 2c7p_A 264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS 321 (327)
T ss_dssp EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence 2232 677899999999999999999984 589999999999999998888777666543
No 23
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.67 E-value=3.8e-09 Score=106.51 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCC
Q 006172 331 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 385 (658)
Q Consensus 331 ppfF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R 385 (658)
|.||++|||..|-......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus 123 P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~ 176 (230)
T 2qrv_B 123 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS 176 (230)
T ss_dssp CCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred CcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence 3467899999998888899999994 89999999999999999999999998865
No 24
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=98.56 E-value=6.7e-08 Score=101.67 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=47.5
Q ss_pred cccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172 465 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 518 (658)
Q Consensus 465 g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL 518 (658)
.+.+++.|++.|+.||+|||++|+=.+.++.+++||.+||+..++.+..++..|
T Consensus 288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l 341 (343)
T 1g55_A 288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL 341 (343)
T ss_dssp HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence 466789999999999999999999655689999999999999999988776544
No 25
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.55 E-value=2e-07 Score=85.29 Aligned_cols=104 Identities=11% Similarity=0.149 Sum_probs=69.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCC--CCCCCCCCcccccchhhhHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDN--DGTNEDKSDETLYGTMEITL 175 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~--d~~~ed~~~e~~~~~m~k~~ 175 (658)
..+.+.+|+.||||++.|.+|+.++|. + ++..+++|++++.+...+-+.++ .+. +.. ..... .-....+++.
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~d~~~--~e~~l~~~-~~~~~-~~~~~~~~v~ 81 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGFDPLL--VEEALEMH-QCSEE-KMMEFLQLMS 81 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTCCHHH--HHHHHHHC-SSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCCChhh--hHHHHHhc-cCCcc-ccccCHHHHH
Confidence 567889999999999999999999998 4 59999999999866442210000 000 000 00000 0011225677
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006172 176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 209 (658)
Q Consensus 176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~A 209 (658)
.|..|||++++|..|+-+++-| ++-=+|.+++
T Consensus 82 ~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~ 113 (118)
T 4ae4_A 82 KFKEMGFELKDIKEVLLLHNND--QDNALEDLMA 113 (118)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 9999999999999999999876 3334444443
No 26
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.53 E-value=5.6e-07 Score=82.46 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC--c
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN--V 92 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~--~ 92 (658)
.+.+++.||||++.+.||+...|..+.+.-++.|+..+.-..-. +.. ..+...+..+...+.- .
T Consensus 6 ~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~----epl----------~~~~~~s~~~~~~~~l~~~ 71 (126)
T 2lbc_A 6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA----EPL----------TMPGYGGAASAGASVFGAS 71 (126)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS----CTT----------CCSSCCSSSSSCCCCSTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc----ccc----------cccccccccccchhhhccc
Confidence 56899999999999999999999999999999999976521100 000 0000000000000000 0
Q ss_pred -cccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 93 -MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 93 -~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
.+.....+.+..|+.|||+++.+.+|+..+|.+ ++.=+++|+.+
T Consensus 72 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~ 116 (126)
T 2lbc_A 72 GLDNQPPEEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH 116 (126)
T ss_dssp SCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred ccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 000124578999999999999999999999764 57888888865
No 27
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=98.21 E-value=1.3e-06 Score=100.46 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=44.9
Q ss_pred cccceeeecccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhh
Q 006172 457 EKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH 514 (658)
Q Consensus 457 ~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~ 514 (658)
...+..|+-+.+.+.|+|.|+.||+|||++|+= .-+.++++|.+||+.-++....+
T Consensus 678 ~~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f--~Gs~~~~ykQIGNAVpp~lA~aI 733 (784)
T 4ft4_B 678 EPHNQVIIHPTQARVLTIRENARLQGFPDYYRL--FGPIKEKYIQVGNAVAVPVARAL 733 (784)
T ss_dssp CSSSSEEECSSSSSBCCHHHHHHHTTCCTTCCC--CSCHHHHHHHHHHSCCHHHHHHH
T ss_pred cCCCCeecCCCCCcCCcHHHHHHHCCCCCCCEe--CCCHHHHHhhccCCCCHHHHHHH
Confidence 334455666778899999999999999999974 55899999999999866655444
No 28
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.05 E-value=2e-05 Score=72.21 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=69.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcc-------cccchhh
Q 006172 100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE-------TLYGTME 172 (658)
Q Consensus 100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e-------~~~~~m~ 172 (658)
+.+..|+.||||+..+.+|+..||..+ ++.-+++|+.++--...+.-. + ......... ...+ .+-...+
T Consensus 5 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl-~-~~~~~s~~~-~~~~~l~~~~~~~~~~e~ 80 (126)
T 2lbc_A 5 SSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPL-T-MPGYGGAAS-AGASVFGASGLDNQPPEE 80 (126)
T ss_dssp HHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTT-C-CSSCCSSSS-SCCCCSTTSSCCCCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccc-c-ccccccccc-cchhhhcccccccCcCHH
Confidence 478999999999999999999998854 689999999986532211000 0 000000000 0000 1112335
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006172 173 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG 210 (658)
Q Consensus 173 k~~~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~Aa 210 (658)
++..|+.|||++++|..|+..||-+ ++.=++.++..
T Consensus 81 ~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~ 116 (126)
T 2lbc_A 81 IVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH 116 (126)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 6779999999999999999999864 66667777643
No 29
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=98.02 E-value=2.4e-06 Score=91.23 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=41.6
Q ss_pred ccccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccccc
Q 006172 466 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS 520 (658)
Q Consensus 466 ~~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvLK~ 520 (658)
+.+-++|++-|.-||+|||++|.= ..+.++.+|.+||+.-+.....+-..++.
T Consensus 313 P~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~la~aia~~I~~ 365 (376)
T 3g7u_A 313 PYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLYN 365 (376)
T ss_dssp SSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHHHHHHHHHHHH
Confidence 457799999999999999999974 56788999999999866555444444443
No 30
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.74 E-value=6.4e-05 Score=78.67 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||||||.|++++.+.+.|. .|++||+++.+.+..+.+....+... ..++.+|+.++... +....+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~----~~~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR----EERRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH----HHHHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHH----HHhcCCC
Confidence 456899999999999999999986 37899999999998888765433221 23556676554221 1112357
Q ss_pred ccEEEecCCCCCcc
Q 006172 602 IDFVICQNSVPQIP 615 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS 615 (658)
||+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997655
No 31
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.74 E-value=1.6e-05 Score=85.42 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCccccccccccchhhHHHHhhhhccCCceeecccccccccccccccccCCCCCCcC
Q 006172 331 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH 387 (658)
Q Consensus 331 ppfF~feNV~~~~~~~w~~is~fL~~~~Pe~vds~~fsaa~R~r~y~hNLP~~~R~~ 387 (658)
|.||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|..
T Consensus 279 P~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~~ 334 (386)
T 2pv0_B 279 PFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSRH 334 (386)
T ss_dssp CCEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTTC
T ss_pred CcEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCcC
Confidence 4478999999998888889999995 8999999999977666666999999998743
No 32
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=97.65 E-value=0.00012 Score=77.74 Aligned_cols=86 Identities=19% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||||||+|++++.+.+.|. ..|++||+++.+.+..+.+....+. . ...++.+|+.++.. .+......
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence 557899999999999999999885 4589999999999998887654322 1 22345667654421 12112357
Q ss_pred ccEEEecCCCCCcc
Q 006172 602 IDFVICQNSVPQIP 615 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS 615 (658)
||+|+..||+...+
T Consensus 294 fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 294 FDVIVMDPPKFVEN 307 (396)
T ss_dssp EEEEEECCSSTTTC
T ss_pred CCEEEECCCCCCCC
Confidence 99999999987665
No 33
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.47 E-value=0.00013 Score=75.26 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=60.8
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172 521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+..+-+|||+|||+|++++.+-+.|-. -|+++|+|+.+.+.++.+-...+-.+ ..++.+|.+++.. .
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~ 190 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E 190 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence 3456789999999999999988777742 47899999999999988755433222 2245677776543 2
Q ss_pred CCccEEEecCCCCC
Q 006172 600 GSIDFVICQNSVPQ 613 (658)
Q Consensus 600 g~~DLVIGGpPCQ~ 613 (658)
+.+|.|+-++|+-.
T Consensus 191 ~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 191 NIADRILMGYVVRT 204 (278)
T ss_dssp SCEEEEEECCCSSG
T ss_pred cCCCEEEECCCCcH
Confidence 56999999999754
No 34
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.44 E-value=0.00022 Score=69.12 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|++.+.|.+.|. .++++|+++.+.+..+.+....+. ....++.+|+.++. ..+.|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence 457899999999999999999985 468999999998888876544321 12234566665543 12579
Q ss_pred cEEEecCCCCCccc
Q 006172 603 DFVICQNSVPQIPN 616 (658)
Q Consensus 603 DLVIGGpPCQ~FS~ 616 (658)
|+|+..+||..+..
T Consensus 146 D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 146 DVVFLSPPWGGPDY 159 (241)
T ss_dssp SEEEECCCCSSGGG
T ss_pred CEEEECCCcCCcch
Confidence 99999999998774
No 35
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.43 E-value=0.00033 Score=66.10 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||++||.|++...+.+.|.. .++++|+++.+.+..+.+....+. ...++.+|+.++. +.||
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 4568999999999999999998863 588999999998888876543321 2335567776653 3699
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999976554
No 36
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.41 E-value=0.00021 Score=72.22 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+-+|||+|||.|++++.+.+.|.. .|+++|+++.+....+.+....+... ..++.+|+.++.. .+.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~ 192 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI 192 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence 44678999999999999999999864 57899999999988887765433222 2256778776653 257
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+..+|+..
T Consensus 193 fD~Vi~~~p~~~ 204 (278)
T 2frn_A 193 ADRILMGYVVRT 204 (278)
T ss_dssp EEEEEECCCSSG
T ss_pred ccEEEECCchhH
Confidence 999999999653
No 37
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=97.37 E-value=0.00024 Score=84.62 Aligned_cols=50 Identities=6% Similarity=-0.041 Sum_probs=39.4
Q ss_pred cccCCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhcccc
Q 006172 467 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL 518 (658)
Q Consensus 467 ~~~~ple~~E~E~i~GfP~~~Tr~~~ls~teR~k~Lgnsfqvdti~~~lsvL 518 (658)
.+.++|++-|..||+|||++|.= .-+.+++++.+||+.-+.....+...+
T Consensus 945 ~~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~~~~i~~~i 994 (1002)
T 3swr_A 945 EQHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPLAKAIGLEI 994 (1002)
T ss_dssp SSSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHHHHHHHHHH
Confidence 35688999999999999999974 558899999999998766555443333
No 38
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.18 E-value=0.00092 Score=71.03 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||||||.|++++.+.+.|. .-|++||+++.+.+..+.+....+.. ...++.+|+.++ +..+......
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence 457899999999999999998885 35889999999999888876543322 223556676543 2222212347
Q ss_pred ccEEEecCCCCCcc
Q 006172 602 IDFVICQNSVPQIP 615 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS 615 (658)
||+|+.-||+-..+
T Consensus 286 fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 286 YDIIIIDPPSFARN 299 (385)
T ss_dssp EEEEEECCCCC---
T ss_pred ccEEEECCCCCCCC
Confidence 99999999986433
No 39
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.17 E-value=0.0006 Score=61.64 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
++.+-+|||+.||.|.+...+.+.|.. ++++|+++.+.+..+.+....+. ...++.+|+.+.. ..+....+.
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~ 110 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER 110 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence 445678999999999999999999864 88999999998888876554322 2234556665421 111111246
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
+|+|+..+|..
T Consensus 111 ~D~i~~~~~~~ 121 (171)
T 1ws6_A 111 FTVAFMAPPYA 121 (171)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999988854
No 40
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.14 E-value=0.00072 Score=70.43 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+-+|||||||+|++++. .+ |- ..++++|+++.+.+..+.+....+. ....++.+|+.++. +.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~ 258 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK 258 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence 4567899999999999988 55 42 4588999999999988887654332 12335567776553 47
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+..||...
T Consensus 259 fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 259 GNRVIMNLPKFA 270 (336)
T ss_dssp EEEEEECCTTTG
T ss_pred CcEEEECCcHhH
Confidence 999999988654
No 41
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.11 E-value=0.00047 Score=64.53 Aligned_cols=82 Identities=18% Similarity=0.344 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||+||.|++.+.+...|. ..++++|+++.+.+..+.+....+.....++.+|+.++... + ..+.||
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence 457899999999999997777775 35889999999998888876544322233456666544211 0 136799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+..+|...
T Consensus 116 ~i~~~~p~~~ 125 (189)
T 3p9n_A 116 LVLADPPYNV 125 (189)
T ss_dssp EEEECCCTTS
T ss_pred EEEECCCCCc
Confidence 9999888543
No 42
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.00081 Score=67.81 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=59.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+..+-+|||+|||+|++++.+.+.+-. ..++++|+++.+.+..+.+....+.....++.+|+.++ .. .+.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~ 186 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV 186 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence 345678999999999999998877422 24789999999999888876543323334667888776 32 247
Q ss_pred ccEEEecCCC
Q 006172 602 IDFVICQNSV 611 (658)
Q Consensus 602 ~DLVIGGpPC 611 (658)
+|+|+-.+|.
T Consensus 187 ~D~Vi~d~p~ 196 (272)
T 3a27_A 187 ADRVIMGYVH 196 (272)
T ss_dssp EEEEEECCCS
T ss_pred ceEEEECCcc
Confidence 9999999986
No 43
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.08 E-value=0.0005 Score=54.71 Aligned_cols=41 Identities=10% Similarity=0.360 Sum_probs=37.6
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
++-++.++.|||++++|.+|++..|....+.-+|.|+..+-
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 56789999999999999999999999999999999998653
No 44
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.06 E-value=0.00063 Score=72.98 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+|||.|++++.+.+.|. + |++||+++.+.+..+.+....+... .+..+|+.++- . ...+.||
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence 467899999999999999999886 3 8899999999988887765433221 23345554321 1 1124599
Q ss_pred EEEecCCC
Q 006172 604 FVICQNSV 611 (658)
Q Consensus 604 LVIGGpPC 611 (658)
+|+.-|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 45
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.04 E-value=0.00078 Score=64.45 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=55.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+||||+||.|.+++.+...|.. .|+++|+++.+.+..+.+....+.....++.+|+.++.. ...+.||+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~ 125 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI 125 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence 468999999999999987777753 578999999999988887654432222344566543211 11257999
Q ss_pred EEecCC
Q 006172 605 VICQNS 610 (658)
Q Consensus 605 VIGGpP 610 (658)
|+..+|
T Consensus 126 V~~~~p 131 (202)
T 2fpo_A 126 VFVDPP 131 (202)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999888
No 46
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.04 E-value=0.00091 Score=54.81 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=36.1
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
..+.+|+.|||+++.+.||+...|..|.+.-+|+|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 378999999999999999999999889999999999864
No 47
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.04 E-value=0.0007 Score=68.15 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||++||.||.+..+... |- ..++++|+++...+.++.+....+.....++.+|+.++... +....+.
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~ 156 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF 156 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence 4678999999999999888763 31 24789999999988888766544322333455666544211 0011357
Q ss_pred ccEEEecCCCCCcccC
Q 006172 602 IDFVICQNSVPQIPNS 617 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS~a 617 (658)
||+|+..+||.++...
T Consensus 157 fD~Vl~d~Pcs~~g~~ 172 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIK 172 (274)
T ss_dssp EEEEEEEECCC-----
T ss_pred CCEEEEcCCCCCCccc
Confidence 9999999999987643
No 48
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.00 E-value=0.00082 Score=64.26 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~--~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+||||+||.|++++.+...|. ..|+++|+++.+.+..+.+....+. ....++.+|+.++... + ..+.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~ 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ----P--QNQP 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS----C--CSSC
T ss_pred CCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh----h--ccCC
Confidence 346899999999999998777775 3588999999999888876654322 1223445665443210 0 1256
Q ss_pred -ccEEEecCCC
Q 006172 602 -IDFVICQNSV 611 (658)
Q Consensus 602 -~DLVIGGpPC 611 (658)
||+|+..+|.
T Consensus 125 ~fD~I~~~~~~ 135 (201)
T 2ift_A 125 HFDVVFLDPPF 135 (201)
T ss_dssp CEEEEEECCCS
T ss_pred CCCEEEECCCC
Confidence 9999998883
No 49
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.00 E-value=0.00082 Score=55.17 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
-..+.+++.||||++.+.||+...|..+.+.=+|+|+..+
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 10 PSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 3478999999999999999999999999999999999854
No 50
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00074 Score=54.97 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=38.9
Q ss_pred CCCCCCCchhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 5 ENIASSSGSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 5 ~~~assS~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
+|.++......+.+++.|||+++.+.+|++..+. |.+.-+|+|+....
T Consensus 2 ~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~ 49 (63)
T 2dak_A 2 SSGSSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHID 49 (63)
T ss_dssp CCCSCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 3444433445789999999999999999999986 79999999998643
No 51
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.96 E-value=0.0014 Score=69.35 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||||||+|++++.+.+.|. .-++++|+++.+.+..+.+....+.. ...++.+|+.++.. .+....+.|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence 567899999999999999998875 35889999999999888876543221 12244566654321 121123579
Q ss_pred cEEEecCCCCCcc
Q 006172 603 DFVICQNSVPQIP 615 (658)
Q Consensus 603 DLVIGGpPCQ~FS 615 (658)
|+|+.-||+-..+
T Consensus 291 D~Vi~dpP~~~~~ 303 (396)
T 2as0_A 291 DIVVLDPPAFVQH 303 (396)
T ss_dssp EEEEECCCCSCSS
T ss_pred CEEEECCCCCCCC
Confidence 9999999975543
No 52
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=96.87 E-value=0.0019 Score=60.87 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||++||.|++...+.+.|. ..++++|+++.+....+.+.. ...++.+|+.++. +.||
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999998875 358899999999888776432 2335677877653 4799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+..+|-..+.
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999998866544
No 53
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.00076 Score=51.74 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=32.7
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
...+.++++|||+++.+.+|++..| |.+.-+|+|+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence 3477999999999999999999997 89999999985
No 54
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.86 E-value=0.0011 Score=54.11 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=37.3
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
.+..+.+..|+.|||+++.+.+|++++|.+ |+..+|.|+++.
T Consensus 17 ~se~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~ 58 (63)
T 1wgn_A 17 PSERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 345677999999999999999999999986 799999999874
No 55
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.77 E-value=0.0017 Score=50.47 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
...++++.|+.|||++++|.+|+..+|.+ ++.-+++|+..
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 36778999999999999999999999874 47889999863
No 56
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=96.73 E-value=0.0032 Score=62.21 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=59.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|++.+.+.+.+-. .++++|+++.+....+.+....+... ..++.+|+.++... + ..+.|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence 4678999999999999999888752 57899999999888887765443222 33566787765421 1 13579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+.-||+-..
T Consensus 121 D~Ii~npPy~~~ 132 (259)
T 3lpm_A 121 DIVTCNPPYFAT 132 (259)
T ss_dssp EEEEECCCC---
T ss_pred cEEEECCCCCCC
Confidence 999999998766
No 57
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=96.73 E-value=0.0036 Score=59.92 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCCCcccccCCC-CChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 522 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 522 f~~~l~vLdLFSG-iGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+.+|||+.|| .|.+.+.+.+. +. .++++|+++.+.+..+.+....+. ...++.+|+..+.. + ..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~ 121 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE 121 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence 3467899999999 99999999887 54 478999999998888876554332 23355677653332 1 12
Q ss_pred CCccEEEecCCCCCcc
Q 006172 600 GSIDFVICQNSVPQIP 615 (658)
Q Consensus 600 g~~DLVIGGpPCQ~FS 615 (658)
+.||+|+.-||+-...
T Consensus 122 ~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKP 137 (230)
T ss_dssp SCEEEEEECCCCC---
T ss_pred CceeEEEECCCCcCCc
Confidence 5799999999986654
No 58
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.73 E-value=0.0026 Score=67.20 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+|||.|++++.+.+.+ .-++++|+++.+....+.+....+.....++.+|+.++.. .+....+.||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence 45789999999999999988763 4588999999999888876654332223345666654321 1211235799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-||+-..+
T Consensus 282 ~Ii~dpP~~~~~ 293 (382)
T 1wxx_A 282 LVVLDPPAFAKG 293 (382)
T ss_dssp EEEECCCCSCCS
T ss_pred EEEECCCCCCCC
Confidence 999999985544
No 59
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.67 E-value=0.0017 Score=68.27 Aligned_cols=83 Identities=10% Similarity=0.063 Sum_probs=57.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------ 598 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~------ 598 (658)
+-+|||||||+|++++.|.+.+ .-|+++|+++.+.+..+.+....+.....++.+|+.++.. .+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence 4579999999999999888744 3588999999999988887654332233355667654321 11110
Q ss_pred ------cCCccEEEecCCCCCc
Q 006172 599 ------LGSIDFVICQNSVPQI 614 (658)
Q Consensus 599 ------~g~~DLVIGGpPCQ~F 614 (658)
.+.||+|+--||+.+.
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g~ 308 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSGL 308 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTCC
T ss_pred cccccccCCCCEEEECcCcccc
Confidence 0369999999998754
No 60
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=96.66 E-value=0.0037 Score=67.00 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=33.1
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
.|..+++|||+++.|.|||...+- |.+.=+|+|++-
T Consensus 171 ~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~g 206 (368)
T 1oqy_A 171 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 689999999999999999999997 999999999753
No 61
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.65 E-value=0.0014 Score=55.36 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=35.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+++..|+.|||++++|..|+.+|+.+ ++.-+|+|+..+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~ 68 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS 68 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 5678999999999999999999999875 688899999764
No 62
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.63 E-value=0.0039 Score=57.22 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|++.+.+.+.|. .-++++|+++.+.+..+.+....+.. ...++.+|+.+... .+....+.|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence 456899999999999998777764 35789999999988887765443211 12245566654321 111113679
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99998877
No 63
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.62 E-value=0.0033 Score=72.26 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+-+|||||||.|++++.+-+.|.. -|++||+++.+....+.+....+.. ...++.+|+.++- . ...+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l----~---~~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWL----R---EANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHH----H---HCCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----H---hcCCC
Confidence 4678999999999999999888863 4889999999999888876543322 1224456655421 1 12357
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+.-|||-.
T Consensus 610 fD~Ii~DPP~f~ 621 (703)
T 3v97_A 610 FDLIFIDPPTFS 621 (703)
T ss_dssp EEEEEECCCSBC
T ss_pred ccEEEECCcccc
Confidence 999999999843
No 64
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=96.60 E-value=0.0075 Score=62.64 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++.. ..+.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~ 273 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV 273 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence 45789999999999988777654 11 2368999999999988887655432223356677776542 12458
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+.-|||-
T Consensus 274 D~Ii~npPyg 283 (354)
T 3tma_A 274 DRILANPPHG 283 (354)
T ss_dssp SEEEECCCSC
T ss_pred CEEEECCCCc
Confidence 9999999983
No 65
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.59 E-value=0.0034 Score=59.20 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=60.6
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172 517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 596 (658)
Q Consensus 517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~ 596 (658)
.|..+.+.+.+|||+.||.|.+...+.+.|. ..++++|+++.+.+..+.+....+.....+..+|+.+..
T Consensus 53 ~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 122 (205)
T 3grz_A 53 GIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-------- 122 (205)
T ss_dssp HHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--------
T ss_pred HHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--------
Confidence 3444445668999999999999999999875 357899999998888777654433222335566665432
Q ss_pred hccCCccEEEecCCCCC
Q 006172 597 HKLGSIDFVICQNSVPQ 613 (658)
Q Consensus 597 ~~~g~~DLVIGGpPCQ~ 613 (658)
.+.+|+|+..+|.+.
T Consensus 123 --~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 123 --DGKFDLIVANILAEI 137 (205)
T ss_dssp --CSCEEEEEEESCHHH
T ss_pred --CCCceEEEECCcHHH
Confidence 257999999887654
No 66
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.57 E-value=0.0035 Score=47.00 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
.+.+..|+.|||+++.+.+|+..|+-+ ++.=+++|+.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence 467899999999999999999999763 5777888874
No 67
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.55 E-value=0.005 Score=63.50 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=61.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.||.+..+....-.-..++++|+++...+..+.+....+.....++.+|+.++.. ..+.||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 189 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD 189 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence 457899999999999988876521112478999999998888876654333233455677765532 125799
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
+|+.-+||.+....
T Consensus 190 ~Il~d~Pcsg~g~~ 203 (315)
T 1ixk_A 190 KILLDAPCTGSGTI 203 (315)
T ss_dssp EEEEECCTTSTTTC
T ss_pred EEEEeCCCCCcccc
Confidence 99999999887643
No 68
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=96.54 E-value=0.0038 Score=76.41 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=40.8
Q ss_pred cCCCCccccccccccch----hhHHHHhhhh----ccCCceeeccccc-ccccccccccc
Q 006172 328 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH 378 (658)
Q Consensus 328 ~~~ppfF~feNV~~~~~----~~w~~is~fL----~~~~Pe~vds~~f-saa~R~r~y~h 378 (658)
..+|.||++|||..+-. ..+..|.+.| |.+...++||..| .||+|.|.|+=
T Consensus 970 ~~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A 970 YYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp HHCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred HhcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence 35799999999999853 2455565554 6788999999999 99999999963
No 69
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.52 E-value=0.0041 Score=67.30 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+-+|||||||.|.+++.|.+.|. -++++|+++.+.+..+.+....+.. ..++.+|+.++... .|
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f 354 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF 354 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence 4567899999999999999988875 4789999999988888766543322 34567777765321 69
Q ss_pred cEEEecCCCCC
Q 006172 603 DFVICQNSVPQ 613 (658)
Q Consensus 603 DLVIGGpPCQ~ 613 (658)
|+|+.-||..+
T Consensus 355 D~Vv~dPPr~g 365 (425)
T 2jjq_A 355 DTVIVDPPRAG 365 (425)
T ss_dssp SEEEECCCTTC
T ss_pred CEEEEcCCccc
Confidence 99999888643
No 70
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.50 E-value=0.0032 Score=51.22 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=35.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 140 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~ 140 (658)
..+++..|+.|||+++.+.+|+..++.+ ++.-+++|+.++-
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~~ 49 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID 49 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 3468899999999999999999999874 6899999998753
No 71
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.49 E-value=0.0021 Score=59.04 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||+.||.|.+...+.+.|. ..++++|+++.+.+..+.+....+.. ...++.+|+.+. +. ...+.|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence 456899999999999998888874 35789999999988888765433211 122344555432 11 122569
Q ss_pred cEEEecCCC
Q 006172 603 DFVICQNSV 611 (658)
Q Consensus 603 DLVIGGpPC 611 (658)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999988774
No 72
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.49 E-value=0.0018 Score=60.38 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...++.+|+.+ .+.......+.|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence 45689999999999999999988532 2478999999988777654432211 12234555554 111111123789
Q ss_pred cEEEecCCCCCcc
Q 006172 603 DFVICQNSVPQIP 615 (658)
Q Consensus 603 DLVIGGpPCQ~FS 615 (658)
|+|+..||+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986544
No 73
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.43 E-value=0.0057 Score=63.49 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=60.5
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||++||.||.++.+-.+ +=. ..|+++|+++...+.++.+....+.....++.+|..++.... ..++.|
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f 175 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV 175 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence 4578999999999999887653 211 247899999999998888765443223345667877665321 113579
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|+|+--+||.++...
T Consensus 176 D~Vl~D~PcSg~G~~ 190 (309)
T 2b9e_A 176 HYILLDPSCSGSGMP 190 (309)
T ss_dssp EEEEECCCCCC----
T ss_pred CEEEEcCCcCCCCCC
Confidence 999999999987753
No 74
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.43 E-value=0.0051 Score=61.35 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|++.+.+...- +-..++++|+++.+.+..+.+....+.....+..+|+.+.- ..+.||
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD 178 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA 178 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence 45789999999999999887541 11247899999999988887655433222334556664321 125799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-|||.+..
T Consensus 179 ~Iv~npPy~~~~ 190 (276)
T 2b3t_A 179 MIVSNPPYIDEQ 190 (276)
T ss_dssp EEEECCCCBCTT
T ss_pred EEEECCCCCCcc
Confidence 999999998764
No 75
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.42 E-value=0.0042 Score=50.80 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 140 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~ 140 (658)
.+++..|+.|||+++.|.+|+..|+.+ ++.-+++|+..+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~ 49 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence 467899999999999999999999874 6889999998754
No 76
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.42 E-value=0.0059 Score=59.69 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~-~ 599 (658)
.+.+|||+.||.|++...+... +. .++++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+. .. .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence 4678999999999988777654 43 47899999999888877655433222 23556776552111111 00 1
Q ss_pred CCccEEEecCCCCCcc
Q 006172 600 GSIDFVICQNSVPQIP 615 (658)
Q Consensus 600 g~~DLVIGGpPCQ~FS 615 (658)
+.||+|+..||+-...
T Consensus 139 ~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 139 IIYDFCMCNPPFFANQ 154 (254)
T ss_dssp CCBSEEEECCCCC---
T ss_pred CcccEEEECCCCccCc
Confidence 4799999999987554
No 77
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.0019 Score=49.45 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
..+++..|+.|||+++.+.+|+..+| + ++.-+++|+.+
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence 35688999999999999999999997 2 68889998753
No 78
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.40 E-value=0.0037 Score=67.30 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=54.8
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K 598 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~-~ 598 (658)
.+.+|||||||+|++++-+-.. |. .-|++||+++.+.+.++.+-...+-.. ..++.+|+.++ +. .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~ 121 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE 121 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence 4578999999999998866553 43 458899999999999998765432211 22344554332 22 1
Q ss_pred -cCCccEEEecCCCCC
Q 006172 599 -LGSIDFVICQNSVPQ 613 (658)
Q Consensus 599 -~g~~DLVIGGpPCQ~ 613 (658)
.+.||+|+--|||..
T Consensus 122 ~~~~fD~V~lDP~g~~ 137 (392)
T 3axs_A 122 WGFGFDYVDLDPFGTP 137 (392)
T ss_dssp CSSCEEEEEECCSSCC
T ss_pred hCCCCcEEEECCCcCH
Confidence 247999999987753
No 79
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.39 E-value=0.0053 Score=56.73 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=56.5
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
++...+.+.+|||+.||.|.++..|.+.|. -|+++|+++.+.+..+.+....+.....++.+|+..+.. +
T Consensus 16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~-- 85 (185)
T 3mti_A 16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y-- 85 (185)
T ss_dssp HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence 445556778999999999999999998865 378999999998887776554322222233344443321 1
Q ss_pred ccCCccEEEecCCC
Q 006172 598 KLGSIDFVICQNSV 611 (658)
Q Consensus 598 ~~g~~DLVIGGpPC 611 (658)
..+.||+|+..+|.
T Consensus 86 ~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 86 VREPIRAAIFNLGY 99 (185)
T ss_dssp CCSCEEEEEEEEC-
T ss_pred ccCCcCEEEEeCCC
Confidence 12579999876543
No 80
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.37 E-value=0.004 Score=50.99 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=33.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
.+..|+.|||+++.+.+|+..+|..+ ++.-+++|+.++
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~ 49 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCC
Confidence 68999999999999999999998654 599999999874
No 81
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=96.31 E-value=0.0064 Score=59.61 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~--------n~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
.+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+.... +.....++.+|+.+.-...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~--- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF--- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence 4678999999999999999888732 24789999999887776654321 11223355677765211111
Q ss_pred hhccCCccEEEecCCCCCc
Q 006172 596 IHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPCQ~F 614 (658)
..+.+|.|+-..|...+
T Consensus 125 --~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 125 --EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp --CTTCEEEEEEESCCCC-
T ss_pred --cccccCEEEEECCCccc
Confidence 12578888877776443
No 82
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=96.28 E-value=0.0095 Score=62.82 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=58.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||++||.|++.+.+.+.|.. ..++++|+|+.+.+..+.+....+. ....+..+|+.++.. ..+.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~ 286 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS 286 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence 45678999999999999999888852 1478999999998888877654322 112345677766542 1257
Q ss_pred ccEEEecCCC
Q 006172 602 IDFVICQNSV 611 (658)
Q Consensus 602 ~DLVIGGpPC 611 (658)
+|+|+.-||.
T Consensus 287 fD~Ii~npPy 296 (373)
T 3tm4_A 287 VDFAISNLPY 296 (373)
T ss_dssp EEEEEEECCC
T ss_pred cCEEEECCCC
Confidence 9999998885
No 83
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.26 E-value=0.0049 Score=45.04 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=29.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI 135 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I 135 (658)
..+++..|+.|||+++.+.+|+..|+-+ ++.=+++|
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L 39 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL 39 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence 5668999999999999999999999764 45555555
No 84
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.26 E-value=0.0051 Score=53.10 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=36.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 140 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~ 140 (658)
..+++..|+.|||+++.|.+|+.+++-+ ++.-+++|+.++-
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 4568999999999999999999999976 6889999998754
No 85
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.26 E-value=0.0089 Score=60.80 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+|||+.||.|.+.+.+.+. +. .++++|+++.+.+..+.+....+... ..++.+|+.+.- . ..++.+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~ 193 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI 193 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence 468999999999999999887 43 47899999999998887765433222 335567776421 1 123344
Q ss_pred cEEEecCCCCCccc
Q 006172 603 DFVICQNSVPQIPN 616 (658)
Q Consensus 603 DLVIGGpPCQ~FS~ 616 (658)
|+|+.-|||-+...
T Consensus 194 D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 194 EMILSNPPYVKSSA 207 (284)
T ss_dssp CEEEECCCCBCGGG
T ss_pred CEEEEcCCCCCccc
Confidence 99999999988763
No 86
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.25 E-value=0.0019 Score=52.79 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=34.7
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
.++.+++|||+++.+.||+|..|. |++..+|.|++..
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~ 58 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 789999999999999999999998 9999999999864
No 87
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.19 E-value=0.0057 Score=50.01 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=34.2
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
.+..+++|||+++.|.+|++..+. |.+.-+|+|++.+
T Consensus 12 ~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~ 48 (63)
T 1wji_A 12 ALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence 679999999999999999999986 8999999999864
No 88
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.17 E-value=0.0058 Score=48.18 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=36.5
Q ss_pred chhHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 96 GLHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 96 s~~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+.+++..|+.||| +++.+.+|+..+|-+ ++.-+++|+..+
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence 347789999999999 999999999999974 688899998764
No 89
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.14 E-value=0.005 Score=46.14 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=31.9
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
.+..+++|||+++.+.+|++..+. |.+.=+|+|+.
T Consensus 7 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~ 41 (43)
T 2g3q_A 7 AVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence 579999999999999999999965 89999999985
No 90
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=96.13 E-value=0.0058 Score=67.03 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.||.++.+-.+ +=. -.|+++|+++...+.++.+....+.....+..+|..++. .. ..+.|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F 176 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF 176 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence 4679999999999999887654 211 147899999999998888765443222223445554332 11 12579
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|+|+--+||.+....
T Consensus 177 D~Il~DaPCSg~G~~ 191 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMF 191 (456)
T ss_dssp EEEEEECCCCCGGGT
T ss_pred CEEEECCCCCCcccc
Confidence 999999999987753
No 91
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.12 E-value=0.011 Score=51.01 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=35.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+.+..|+.|||+++.+.+|+...|..+ ++.=+++|+.++
T Consensus 29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~ 69 (84)
T 1vek_A 29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHM 69 (84)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCC
Confidence 45689999999999999999999988654 588899999874
No 92
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.09 E-value=0.0066 Score=51.10 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+++..|+.|||+++.+.+|+..+|..+ ++.=+++|+.++
T Consensus 9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence 34688999999999999999999999643 588899999874
No 93
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.03 E-value=0.005 Score=51.82 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=36.0
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
..+.+|+.|||+++.+.||+...|..|.+.=+|+|+...
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 377999999999999999999999889999999999864
No 94
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=96.01 E-value=0.0072 Score=61.93 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=56.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|.++..|.+.|. -++++|+|+......+.+....+.....++.+|+.++. ++.+|
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~----------~~~~D 108 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV----------FPKFD 108 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC----------CCCCS
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC----------cccCC
Confidence 457899999999999999988874 47899999999888877654322222335667776654 24689
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|++-+|++..+
T Consensus 109 ~Vv~n~py~~~~ 120 (299)
T 2h1r_A 109 VCTANIPYKISS 120 (299)
T ss_dssp EEEEECCGGGHH
T ss_pred EEEEcCCccccc
Confidence 999999977543
No 95
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.01 E-value=0.007 Score=49.65 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
.+..|+.||||++.+.+|+..+|..+ ++.=+++|++++
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCC
Confidence 46899999999999999999998854 589999999874
No 96
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.00 E-value=0.0044 Score=48.13 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=32.6
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
.+..+++|||+++.|.+|++..|- |.+.-+|+|++
T Consensus 11 ~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~ 45 (49)
T 1ify_A 11 MLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 579999999999999999999986 89999999987
No 97
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.98 E-value=0.0096 Score=65.47 Aligned_cols=86 Identities=16% Similarity=-0.016 Sum_probs=60.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||.||.||.++.+-.+--.--.|+++|+++...+.++.+....+.. ..+..+|..++. .. ..+.||
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD 172 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH 172 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence 4678999999999999888754111114789999999999988876554333 334556655432 11 135799
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
+|+--+||.+....
T Consensus 173 ~Il~D~PcSg~G~~ 186 (464)
T 3m6w_A 173 RVLLDAPCSGEGMF 186 (464)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEECCCcCCcccc
Confidence 99999999987754
No 98
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.98 E-value=0.0092 Score=64.72 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=57.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+-+||||+||+|+.++.|-+.|. -|++||+|+.+....+.+.... +.....++.+|+.+.-.. +. .+.|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~-----~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IK-----TFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HH-----HHCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-cc-----CCCc
Confidence 67899999999999999999885 4789999999999988877543 221233567787654211 11 1379
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+--||=.
T Consensus 165 DvV~lDPPrr 174 (410)
T 3ll7_A 165 DYIYVDPARR 174 (410)
T ss_dssp SEEEECCEEC
T ss_pred eEEEECCCCc
Confidence 9999888744
No 99
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=95.97 E-value=0.012 Score=58.75 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~---~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+....+.+... .+... ..++.+|+.++....+... ...
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~-~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG-LPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT-CCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc-cCC
Confidence 4568999999999999988876522 3578999999998888876543 22111 2356778876632211100 012
Q ss_pred CCccEEEecCCCCCc
Q 006172 600 GSIDFVICQNSVPQI 614 (658)
Q Consensus 600 g~~DLVIGGpPCQ~F 614 (658)
+.||+|+..||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998765
No 100
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.93 E-value=0.015 Score=55.01 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=56.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+...+.+.|. .++++|+++......+.+....+ ....++.+|+.++.. ..+.+
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~ 104 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF 104 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence 3467999999999999999999986 47899999998887776654332 333456778776541 12479
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+..++
T Consensus 105 D~v~~~~~ 112 (227)
T 1ve3_A 105 DYVIFIDS 112 (227)
T ss_dssp EEEEEESC
T ss_pred EEEEEcCc
Confidence 99987766
No 101
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=95.92 E-value=0.0076 Score=61.25 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||+-||.|.++..|.+.|. -++++|+|+......+......+. ....++.+|+.++. ++.+
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~----------~~~f 94 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD----------LPFF 94 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC----------CCCC
T ss_pred CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc----------chhh
Confidence 457899999999999999998885 378999999998888775532211 12235567776653 2368
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|++..|++-.
T Consensus 95 D~vv~nlpy~~~ 106 (285)
T 1zq9_A 95 DTCVANLPYQIS 106 (285)
T ss_dssp SEEEEECCGGGH
T ss_pred cEEEEecCcccc
Confidence 999999998754
No 102
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=95.91 E-value=0.014 Score=62.91 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=60.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+||||+||.|.+++.|.+.+. -++++|+++.+.+..+.+....+.....++.+|+.+.-.. +....+.||
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~----~~~~~~~fD 358 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK----QPWAKNGFD 358 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS----SGGGTTCCS
T ss_pred CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh----hhhhcCCCC
Confidence 456899999999999999988864 4789999999988888776543322334567787663211 001124799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+.-||..+..
T Consensus 359 ~Vv~dPPr~g~~ 370 (433)
T 1uwv_A 359 KVLLDPARAGAA 370 (433)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEECCCCccHH
Confidence 999999987653
No 103
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=95.91 E-value=0.0073 Score=64.42 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=54.0
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL 587 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~---------------n~~g~l~~~~DI~~L 587 (658)
.+.+|||||||+|++++.+-.. |- .-|+++|+++.+.+..+.+.... +.....++.+|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 4678999999999999887765 52 23789999999999998876543 111112233444322
Q ss_pred ChhhHHHhhhc-cCCccEEEecCCCC
Q 006172 588 TTKKFESLIHK-LGSIDFVICQNSVP 612 (658)
Q Consensus 588 t~~~Ie~l~~~-~g~~DLVIGGpPCQ 612 (658)
... .+.||+|+--|||.
T Consensus 125 --------~~~~~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 125 --------MAERHRYFHFIDLDPFGS 142 (378)
T ss_dssp --------HHHSTTCEEEEEECCSSC
T ss_pred --------HHhccCCCCEEEeCCCCC
Confidence 222 24799999888886
No 104
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=95.85 E-value=0.011 Score=65.06 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||++||.||.+..+... +-. -.|+++|+++...+.++.+....+.....+..+|..++.. . ..+.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence 4678999999999999887764 211 2478999999999888877654332223345566655421 0 12579
Q ss_pred cEEEecCCCCCcccC
Q 006172 603 DFVICQNSVPQIPNS 617 (658)
Q Consensus 603 DLVIGGpPCQ~FS~a 617 (658)
|+|+.-+||.+....
T Consensus 189 D~Il~D~PcSg~G~~ 203 (479)
T 2frx_A 189 DAILLDAPCSGEGVV 203 (479)
T ss_dssp EEEEEECCCCCGGGG
T ss_pred CEEEECCCcCCcccc
Confidence 999999999987643
No 105
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=95.80 E-value=0.025 Score=53.28 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=58.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+.+|||+.||.|.+...|.+.|. .++++|+++......+.+....+.....+..+|+.+... ..+.|
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~ 144 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPF 144 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCc
Confidence 3567899999999999999988875 478999999998888876654332233355677765432 12579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+...++..+
T Consensus 145 D~i~~~~~~~~~ 156 (210)
T 3lbf_A 145 DAIIVTAAPPEI 156 (210)
T ss_dssp EEEEESSBCSSC
T ss_pred cEEEEccchhhh
Confidence 999987666544
No 106
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=95.74 E-value=0.022 Score=51.97 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+.||.|.+...+.+.|. .++++|+++.+....+.+....+... ..+..+|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 457899999999999999888865 47899999999888877654432222 2345566654221 257
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
+|+|+..+|..
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999876643
No 107
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.73 E-value=0.0099 Score=49.90 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+++..|+.|||+++.|.+|+..||. .++.=+++|+..+
T Consensus 29 ~~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence 456899999999999999999999986 3688899998763
No 108
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.72 E-value=0.0081 Score=51.76 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=36.1
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
..+..++.|||+++.+.||+...|..|.+.=+|+|+...
T Consensus 31 ~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 31 EIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 378999999999999999999999889999999999864
No 109
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.71 E-value=0.018 Score=61.30 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=59.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||.||.|.+.+.+.+.|.+ +++||+++.+....+.+....+. ...++.+|+.+.... .+.||
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~---V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAE---VVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCE---EEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcccc--------CCCeE
Confidence 4578999999999999999999864 68899999999888877654322 234566777665421 25799
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+..+|..
T Consensus 301 ~Ii~npp~~ 309 (381)
T 3dmg_A 301 IIVTNPPFH 309 (381)
T ss_dssp EEEECCCCC
T ss_pred EEEECCchh
Confidence 999988865
No 110
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=95.70 E-value=0.01 Score=61.39 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce----eeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKL----KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~----k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+.||.|++.+.+.+..-.. ..++++|+++.+.++.+.+....+. ...+..+|..... ..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence 45799999999999998886553211 3578999999998888776543322 2234456643211 12
Q ss_pred CCccEEEecCCCCC
Q 006172 600 GSIDFVICQNSVPQ 613 (658)
Q Consensus 600 g~~DLVIGGpPCQ~ 613 (658)
+.||+|++-||..-
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999743
No 111
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.70 E-value=0.007 Score=49.58 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
.+.+++.||||++.+.+|+...|..|.+.=+|+|+..
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 6799999999999999999999987999999999963
No 112
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=95.68 E-value=0.016 Score=54.01 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=59.3
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
|..+.+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+....+..... .....+...|+.++..
T Consensus 36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~-------- 103 (215)
T 2pxx_A 36 LEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF-------- 103 (215)
T ss_dssp HGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------
Confidence 3334456789999999999999999999873 578999999998887765432 1233355677776531
Q ss_pred ccCCccEEEecCCCC
Q 006172 598 KLGSIDFVICQNSVP 612 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ 612 (658)
..+.||+|+...+..
T Consensus 104 ~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 104 PSASFDVVLEKGTLD 118 (215)
T ss_dssp CSSCEEEEEEESHHH
T ss_pred CCCcccEEEECcchh
Confidence 125799999766543
No 113
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.68 E-value=0.019 Score=61.41 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 566 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k 566 (658)
.+.++||+|||.|++.+.+...+.++ ..++++|+|+.+.+..+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 45789999999999876555443321 13789999999999888
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172 567 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 567 ~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 611 (658)
.+....+... ..++.+|+.++.. .+.+|+||.-||-
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY 317 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence 8765543222 3356678876653 1479999999883
No 114
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.66 E-value=0.007 Score=49.56 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 101 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 101 ~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
.+..|+.|||+++.+.+|+..+|..+ ++.=+++|+.+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhC
Confidence 68999999999999999999998733 58889999865
No 115
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=95.59 E-value=0.034 Score=59.54 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=34.2
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
+...+.+..|+.|||+++.|.+||..++.+ . +.=+|+|++.
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn-~-~~A~e~L~~g 206 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYNN-P-HRAVEYLLTG 206 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCSS-T-THHHHTTTTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCC-H-HHHHHHHHhC
Confidence 347889999999999999999999999874 3 6778888643
No 116
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.59 E-value=0.01 Score=50.03 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=34.1
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
.+..+++|||+++.|.+|++..+- |.+.-+|+||+.+
T Consensus 32 ~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 32 QIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence 789999999999999999999986 8999999999743
No 117
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=95.59 E-value=0.012 Score=60.92 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=65.2
Q ss_pred hhhhhcc--cchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc
Q 006172 502 LRHCFQT--DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV 579 (658)
Q Consensus 502 Lgnsfqv--dti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~ 579 (658)
+|-.|-+ .++..++..+.. ..+-+|||+-||.|.++..|.+.|- -|++||+|+.....++..+.. .....+
T Consensus 28 ~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~v 100 (295)
T 3gru_A 28 LGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIEI 100 (295)
T ss_dssp --CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEEE
T ss_pred cCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeEE
Confidence 3554522 234444444432 2456899999999999999998874 478999999998888876542 123346
Q ss_pred ccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172 580 QIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 580 ~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
+.+|+.++.... ..+|+|++..|-+
T Consensus 101 i~gD~l~~~~~~--------~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 101 IWGDALKVDLNK--------LDFNKVVANLPYQ 125 (295)
T ss_dssp EESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred EECchhhCCccc--------CCccEEEEeCccc
Confidence 788988775322 2589999888743
No 118
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=95.58 E-value=0.031 Score=53.37 Aligned_cols=96 Identities=18% Similarity=0.108 Sum_probs=61.7
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcccccccc
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQ 585 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi----~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~ 585 (658)
+..|......+.+|||+-||.|.+...+.+.+- +-..++++|+++...+..+.+....+ .....+..+|+.
T Consensus 71 ~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIY 150 (227)
T ss_dssp HHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGG
T ss_pred HHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChH
Confidence 344443344568999999999999998887653 11247899999998887776654332 122334567776
Q ss_pred ccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172 586 ALTTKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 586 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
+...... ...+.||+|+...++..+
T Consensus 151 ~~~~~~~----~~~~~fD~I~~~~~~~~~ 175 (227)
T 2pbf_A 151 QVNEEEK----KELGLFDAIHVGASASEL 175 (227)
T ss_dssp GCCHHHH----HHHCCEEEEEECSBBSSC
T ss_pred hcccccC----ccCCCcCEEEECCchHHH
Confidence 5431111 112579999988877644
No 119
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.025 Score=61.22 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.||.+..+...--.-..++++|+++...+.++.+....+.....+..+|+.++... + ..+.||
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD 332 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD 332 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence 4578999999999999888764211124789999999988888765543332333556777665421 1 114699
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
+|+.-+||.++...
T Consensus 333 ~Vl~D~Pcsg~g~~ 346 (450)
T 2yxl_A 333 KVLLDAPCTSSGTI 346 (450)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEcCCCCCCeee
Confidence 99999999988754
No 120
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=95.54 E-value=0.015 Score=62.05 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=54.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRIL 565 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~ 565 (658)
..+.+|||+|||.|++.+.+-..|.++ ..++++|+|+.+.+..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 345789999999999877665544221 2478999999999888
Q ss_pred HHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172 566 KRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 610 (658)
Q Consensus 566 k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 610 (658)
+.+....+.. ...+..+|+.++.. .+.+|+||.-||
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP 310 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP 310 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred HHHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence 8766544321 12245677766543 246999999988
No 121
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=95.54 E-value=0.022 Score=56.43 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...|.+.|.+ ++++|+++.+....+.+....+. ...+..+|+.++.. .+.||
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence 4578999999999999999999974 68999999998887776544322 23355677766542 25789
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 998876544
No 122
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.52 E-value=0.012 Score=46.13 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=32.9
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
+.+++..|+.||| +++.+.+|+..+|-+ ++.-+++|+.
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~ 50 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG 50 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 5678999999999 999999999999874 5788888864
No 123
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=95.51 E-value=0.014 Score=61.16 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=58.7
Q ss_pred Hhhhhhhcccchhhhc-ccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 006172 500 ESLRHCFQTDTLGYHL-SVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE 577 (658)
Q Consensus 500 k~Lgnsfqvdti~~~l-svLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~ 577 (658)
+.+|..|..+.+...+ ..+.. +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+.. ...
T Consensus 16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~ 83 (421)
T 2ih2_A 16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA 83 (421)
T ss_dssp -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence 4456666555444432 22322 24559999999999999988763 111 3578999999874321 122
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCCCCCccc
Q 006172 578 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN 616 (658)
Q Consensus 578 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~ 616 (658)
.++.+|+.+... .+.||+|++-||......
T Consensus 84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE 113 (421)
T ss_dssp EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence 355677765432 257999999999977653
No 124
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.026 Score=51.06 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=53.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...+.+.+. .++++|+++.+....+.+....+.....++.+|+.+ .++ .+.+|
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D 102 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN 102 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence 456899999999999999988443 578999999998888776544322222344556543 111 15799
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+..+|
T Consensus 103 ~i~~~~~ 109 (183)
T 2yxd_A 103 KAFIGGT 109 (183)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9998887
No 125
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=95.44 E-value=0.014 Score=54.42 Aligned_cols=82 Identities=12% Similarity=0.076 Sum_probs=55.8
Q ss_pred CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+.+|||+.||.|.+...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++.. . ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence 345679999999999999888765 211 1478999999998888776554321 122345677655432 1 12
Q ss_pred CCccEEEecCCC
Q 006172 600 GSIDFVICQNSV 611 (658)
Q Consensus 600 g~~DLVIGGpPC 611 (658)
+.||+|+..+|-
T Consensus 92 ~~fD~v~~~~~~ 103 (197)
T 3eey_A 92 CPVKAVMFNLGY 103 (197)
T ss_dssp SCEEEEEEEESB
T ss_pred CCceEEEEcCCc
Confidence 579999988766
No 126
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.43 E-value=0.016 Score=57.47 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+.+.+.+.|. -++++|+++.+....+.+....+.. ..+..+|+.+. + ..+.|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f 185 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF 185 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence 4567999999999999999999996 4789999999988888765443221 22334454331 1 12579
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+...+
T Consensus 186 D~Vv~n~~ 193 (254)
T 2nxc_A 186 DLLVANLY 193 (254)
T ss_dssp EEEEEECC
T ss_pred CEEEECCc
Confidence 99997554
No 127
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.42 E-value=0.01 Score=55.18 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+|||+.||.|.+...+.+.| .++++|+++.+.+. . ....++.+|+.+.-. .+.||+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~--~~~~~~~~d~~~~~~---------~~~fD~ 81 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------H--RGGNLVRADLLCSIN---------QESVDV 81 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------C--SSSCEEECSTTTTBC---------GGGCSE
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------c--cCCeEEECChhhhcc---------cCCCCE
Confidence 4589999999999999999988 47899999997654 1 123356778765221 146999
Q ss_pred EEecCCCCCcc
Q 006172 605 VICQNSVPQIP 615 (658)
Q Consensus 605 VIGGpPCQ~FS 615 (658)
|+..+|-...+
T Consensus 82 i~~n~~~~~~~ 92 (170)
T 3q87_B 82 VVFNPPYVPDT 92 (170)
T ss_dssp EEECCCCBTTC
T ss_pred EEECCCCccCC
Confidence 99988765443
No 128
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.39 E-value=0.017 Score=49.81 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=35.4
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
..+..++.|||+++.|.+|++..+. |.+.=+|+|+..+.
T Consensus 31 e~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~ 69 (83)
T 1veg_A 31 ESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 3679999999999999999999996 69999999999765
No 129
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=95.37 E-value=0.036 Score=52.11 Aligned_cols=80 Identities=11% Similarity=0.009 Sum_probs=55.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...+.+.|-. ..++++|+++.+.+..+.+....+.....++.+|+.+.-. ..+.+|
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D 110 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD 110 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence 4678999999999999999988722 2478999999998888776544332222344566543221 225799
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+.+.+..
T Consensus 111 ~i~~~~~~~ 119 (204)
T 3e05_A 111 RVFIGGSGG 119 (204)
T ss_dssp EEEESCCTT
T ss_pred EEEECCCCc
Confidence 999877654
No 130
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.33 E-value=0.013 Score=59.28 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=63.3
Q ss_pred Hhhhhhhccc--chhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC
Q 006172 500 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE 577 (658)
Q Consensus 500 k~Lgnsfqvd--ti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~ 577 (658)
|.+|-.|-+| .+..++..+.. ..+-+|||+-||.|.++..|.+.|- -++++|+|+.....++..+.. ....
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v 77 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI 77 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence 3445555332 33333433321 2457899999999999999998884 478999999999888876543 1223
Q ss_pred ccccccccccChhhHHHhhhccCCccEEEecCC
Q 006172 578 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS 610 (658)
Q Consensus 578 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP 610 (658)
.++.+|+.++.-..+. ..+.+| |||-+|
T Consensus 78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 4678899888643321 113567 777776
No 131
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=95.33 E-value=0.027 Score=60.22 Aligned_cols=79 Identities=10% Similarity=0.088 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeeCCHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK 566 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~-------------------------------------k~vvavEid~~a~~t~k 566 (658)
.+.++||.|||.|++.+.+...+.++ ..++++|+|+.+.+..+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 45789999999999876555443321 13789999999999888
Q ss_pred HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172 567 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 567 ~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 611 (658)
.+....+... ..++.+|+.++.. ...+|+|+.-||-
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY 310 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred HHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence 8765543222 2345678777653 1479999998884
No 132
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.29 E-value=0.056 Score=46.46 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=34.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+.+..|+.|||+++.+.+|+..|+. .++.=+++|+.++
T Consensus 29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence 456899999999999999999999954 3688999999874
No 133
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=95.25 E-value=0.034 Score=53.05 Aligned_cols=91 Identities=18% Similarity=0.122 Sum_probs=60.3
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccC
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALT 588 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt 588 (658)
+..|......+.+|||+-||.|++...+.+. |-. ..++++|+++...+..+.+....+ .....+..+|+....
T Consensus 68 l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (226)
T 1i1n_A 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY 146 (226)
T ss_dssp HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred HHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc
Confidence 4444434456789999999999999888765 422 247899999998887776554321 111224456665332
Q ss_pred hhhHHHhhhccCCccEEEecCCCCCc
Q 006172 589 TKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 589 ~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
. ..+.||+|+...||..+
T Consensus 147 ~--------~~~~fD~i~~~~~~~~~ 164 (226)
T 1i1n_A 147 A--------EEAPYDAIHVGAAAPVV 164 (226)
T ss_dssp G--------GGCCEEEEEECSBBSSC
T ss_pred c--------cCCCcCEEEECCchHHH
Confidence 1 13579999999998765
No 134
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=95.20 E-value=0.03 Score=52.91 Aligned_cols=85 Identities=19% Similarity=0.275 Sum_probs=58.4
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhh
Q 006172 517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK 591 (658)
Q Consensus 517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-----g~l~~~~DI~~Lt~~~ 591 (658)
.++.+.+.+.+|||+-||.|.+...+...|.+ ++++|+++.+.+..+.+....+.. ...+...|+.++..
T Consensus 23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 97 (235)
T 3sm3_A 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-- 97 (235)
T ss_dssp THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence 34455667889999999999999999999874 688999999988877654332110 01234566655431
Q ss_pred HHHhhhccCCccEEEecCCCC
Q 006172 592 FESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
..+.||+|+......
T Consensus 98 ------~~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 98 ------HDSSFDFAVMQAFLT 112 (235)
T ss_dssp ------CTTCEEEEEEESCGG
T ss_pred ------CCCceeEEEEcchhh
Confidence 125799999765443
No 135
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=95.19 E-value=0.044 Score=50.51 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+|||+-||.|.+...+.+.|.+ ++++|+++.+....+......+.....+...|+.++.. .+.+|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~ 100 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYD---VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF 100 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence 459999999999999999998874 68899999988887776544322233345677766532 257899
Q ss_pred EEecCC
Q 006172 605 VICQNS 610 (658)
Q Consensus 605 VIGGpP 610 (658)
|+...+
T Consensus 101 v~~~~~ 106 (199)
T 2xvm_A 101 ILSTVV 106 (199)
T ss_dssp EEEESC
T ss_pred EEEcch
Confidence 886654
No 136
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.17 E-value=0.033 Score=50.77 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=55.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+.+|||+-||.|.+...+.+.|.+ ++++|+++.+....+.... ...++..|+.++.. ..+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGHD---VLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCCc---EEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence 456789999999999999999999864 6889999998877765432 23355677766531 1257
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
+|+|+..+++-.
T Consensus 108 ~D~i~~~~~~~~ 119 (195)
T 3cgg_A 108 FDLIVSAGNVMG 119 (195)
T ss_dssp EEEEEECCCCGG
T ss_pred eeEEEECCcHHh
Confidence 999998655543
No 137
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=95.16 E-value=0.037 Score=59.30 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.||.+..+...+-. -.++++|+++...+..+.+....+. ...+..+|..++... + ..+.||
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD 317 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD 317 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence 4578999999999999998887633 3578999999988888876654322 223456777655311 1 125799
Q ss_pred EEEecCCCCCcccC
Q 006172 604 FVICQNSVPQIPNS 617 (658)
Q Consensus 604 LVIGGpPCQ~FS~a 617 (658)
+|+.-+||.++...
T Consensus 318 ~Vl~D~Pcsg~g~~ 331 (429)
T 1sqg_A 318 RILLDAPCSATGVI 331 (429)
T ss_dssp EEEEECCCCCGGGT
T ss_pred EEEEeCCCCccccc
Confidence 99999999988754
No 138
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=95.14 E-value=0.023 Score=54.32 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=57.5
Q ss_pred hcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006172 514 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE 593 (658)
Q Consensus 514 ~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie 593 (658)
.+..+..+.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++.+....+... ...+..++.+|+.++..
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~---- 112 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF---- 112 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence 34445555667789999999999999999999874 678999999887766532 12233355677776542
Q ss_pred HhhhccCCccEEEecC
Q 006172 594 SLIHKLGSIDFVICQN 609 (658)
Q Consensus 594 ~l~~~~g~~DLVIGGp 609 (658)
..+.||+|+...
T Consensus 113 ----~~~~fD~v~~~~ 124 (242)
T 3l8d_A 113 ----ENEQFEAIMAIN 124 (242)
T ss_dssp ----CTTCEEEEEEES
T ss_pred ----CCCCccEEEEcC
Confidence 124688888643
No 139
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.09 E-value=0.015 Score=42.33 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=29.8
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLI 49 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LL 49 (658)
.+..++.|||+++.+.+|++..+. |.+.=+++|+
T Consensus 7 ~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 7 KIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 578999999999999999999965 8888788774
No 140
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.07 E-value=0.024 Score=44.66 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=33.2
Q ss_pred hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
-+..+++||| +++.+.+|++..|. |.+.-+|+|+..
T Consensus 14 ~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~ 50 (53)
T 2knz_A 14 QLEQLNSMGFINREANLQALIATGG-DINAAIERLLGS 50 (53)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHc
Confidence 4799999999 99999999999997 899999999974
No 141
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=95.05 E-value=0.049 Score=52.15 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|.+.+.+.+.|. .++++|+++.+.+..+.+....+.. ...++.+|+.+.- ...+.|
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~ 123 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP 123 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence 457899999999999999988865 3789999999988887765443322 2234566765421 122579
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+-+.
T Consensus 124 D~v~~~~ 130 (204)
T 3njr_A 124 EAVFIGG 130 (204)
T ss_dssp SEEEECS
T ss_pred CEEEECC
Confidence 9998554
No 142
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=95.05 E-value=0.048 Score=51.34 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... +..+..+|+.++.. .+.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~ 102 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA 102 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence 345679999999999999999999874 678999999887776643 12245677766651 257
Q ss_pred ccEEEecC
Q 006172 602 IDFVICQN 609 (658)
Q Consensus 602 ~DLVIGGp 609 (658)
||+|+...
T Consensus 103 fD~v~~~~ 110 (211)
T 3e23_A 103 YDAVWAHA 110 (211)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 88888654
No 143
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=95.03 E-value=0.045 Score=52.11 Aligned_cols=82 Identities=20% Similarity=0.083 Sum_probs=56.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+ ..+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence 3578999999999999988876322 2478999999998887776544332233356778766431 01 125699
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999887753
No 144
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=94.96 E-value=0.035 Score=56.67 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+ +|||+-||.|.++..|.+.|. -|+++|+|+.....++..... ....++.+|+.+++-..+ ..+|
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~-------~~~~ 112 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEV-------PQGS 112 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGS-------CTTE
T ss_pred CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhc-------cCcc
Confidence 35 899999999999999999985 478999999999888876532 223467899988865432 2578
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+|-.|=+
T Consensus 113 ~iv~NlPy~ 121 (271)
T 3fut_A 113 LLVANLPYH 121 (271)
T ss_dssp EEEEEECSS
T ss_pred EEEecCccc
Confidence 999988743
No 145
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=94.95 E-value=0.038 Score=58.06 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~-Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+. |.|.+.+.+.+.|.. ..++++|+++.+.+..+.+....+.....++.+|+.+ +... ..+.|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~f 242 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKF 242 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCB
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCc
Confidence 357899999 999999999888752 3578999999998888876654332223356788876 4311 12479
Q ss_pred cEEEecCCCCC
Q 006172 603 DFVICQNSVPQ 613 (658)
Q Consensus 603 DLVIGGpPCQ~ 613 (658)
|+|+..+||..
T Consensus 243 D~Vi~~~p~~~ 253 (373)
T 2qm3_A 243 DTFITDPPETL 253 (373)
T ss_dssp SEEEECCCSSH
T ss_pred cEEEECCCCch
Confidence 99999999853
No 146
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.93 E-value=0.079 Score=62.25 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=72.2
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCcc
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVM 93 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~~ 93 (658)
.+++.++.||||+....||+...|..+.+.-.+.|+..-. |.++++.-... ..+ ....... .
T Consensus 654 ~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~--~~~-~~~s~~~-~-- 715 (854)
T 3ihp_A 654 SVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILP--GSS-GPGSTSA-A-- 715 (854)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC-----------------
T ss_pred HHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------ccccccccccc--ccc-ccccccc-c--
Confidence 3789999999999999999999999999999999986432 11111111110 000 0000000 0
Q ss_pred ccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 006172 94 DEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI 140 (658)
Q Consensus 94 ~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~ 140 (658)
..+...+.+..|..|||+.+.+.+|+++.+.+ ++.-+|.|++...
T Consensus 716 ~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~d 760 (854)
T 3ihp_A 716 ADPPPEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID 760 (854)
T ss_dssp ---CCHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCcc
Confidence 01124567889999999999999999998764 6888999988643
No 147
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=94.92 E-value=0.018 Score=45.27 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=32.4
Q ss_pred hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
.+..+++||| +++.+.+|++..|. |.+.-+|+|+.
T Consensus 15 ~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~ 50 (52)
T 2jy5_A 15 QLEQLSAMGFLNREANLQALIATGG-DINAAIERLLG 50 (52)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 6799999999 99999999999987 89999999975
No 148
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=94.90 E-value=0.02 Score=48.09 Aligned_cols=36 Identities=11% Similarity=0.362 Sum_probs=33.5
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
.+..++.|||+++.+.+|++..|. |.+.=+|+|+..
T Consensus 32 ~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~ 67 (73)
T 1wiv_A 32 SVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 679999999999999999999986 999999999974
No 149
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=94.89 E-value=0.024 Score=55.40 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006172 516 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 516 svLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l 595 (658)
..|....+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.... ...++.+|+.++..
T Consensus 42 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~------ 107 (263)
T 3pfg_A 42 ALVRRHSPKAASLLDVACGTGMHLRHLADSFGT---VEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL------ 107 (263)
T ss_dssp HHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSE---EEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC------
T ss_pred HHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc------
Confidence 334445567789999999999999999999864 6889999998877765422 23356778776542
Q ss_pred hhccCCccEEEecC
Q 006172 596 IHKLGSIDFVICQN 609 (658)
Q Consensus 596 ~~~~g~~DLVIGGp 609 (658)
.+.||+|+...
T Consensus 108 ---~~~fD~v~~~~ 118 (263)
T 3pfg_A 108 ---GRRFSAVTCMF 118 (263)
T ss_dssp ---SCCEEEEEECT
T ss_pred ---cCCcCEEEEcC
Confidence 24788888654
No 150
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=94.79 E-value=0.055 Score=52.59 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+.||.|++...+.+. |-. ..++++|+++...+..+.+....+... ..+..+|+.+.- ..+.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 162 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN 162 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence 4578999999999999999887 411 247899999998887777654433222 234566765331 1246
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
+|+|+..+|+.
T Consensus 163 ~D~v~~~~~~~ 173 (255)
T 3mb5_A 163 VDHVILDLPQP 173 (255)
T ss_dssp EEEEEECSSCG
T ss_pred cCEEEECCCCH
Confidence 99999877765
No 151
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=94.79 E-value=0.042 Score=54.48 Aligned_cols=76 Identities=16% Similarity=0.007 Sum_probs=53.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|.++..|.+.|. -++++|+|+......+..... .....++.+|+.++.... ...+
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~- 96 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY- 96 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC-
T ss_pred CCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe-
Confidence 457899999999999999998884 478999999998888775532 122345678887765311 1234
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
.|++.+|=+
T Consensus 97 ~vv~nlPy~ 105 (244)
T 1qam_A 97 KIFGNIPYN 105 (244)
T ss_dssp EEEEECCGG
T ss_pred EEEEeCCcc
Confidence 577777643
No 152
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=94.78 E-value=0.039 Score=51.48 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+ +|||+-||.|.+...|.+.|.+ ++++|+++.+....+......+. ...+...|+.++.. ..+.|
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGYE---VTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTCE---EEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence 445 9999999999999999999874 68899999988877765543221 22345667765531 12468
Q ss_pred cEEEec
Q 006172 603 DFVICQ 608 (658)
Q Consensus 603 DLVIGG 608 (658)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 999864
No 153
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=94.77 E-value=0.047 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+......+. ...+..+|+.++.. .+.|
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence 45679999999999999999999864 78899999988877765543321 23345677766542 1579
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9998643
No 154
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=94.70 E-value=0.058 Score=55.88 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||++||.||.+..+-+.+=. ..++++|+|+.+....+.+....+ ....++.+|..++.. .+..+ ..+.||
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D 100 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD 100 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence 3468999999999999988775211 247899999999988877654322 222355677665531 11110 124799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
.|+--+||..
T Consensus 101 ~Vl~D~gvSs 110 (301)
T 1m6y_A 101 GILMDLGVST 110 (301)
T ss_dssp EEEEECSCCH
T ss_pred EEEEcCccch
Confidence 9999888853
No 155
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=94.70 E-value=0.012 Score=65.42 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+++|||+=||.|-++..|.++|.. |.+||.++.+..+-+.+-... |.+ .-+.+..+.+++... ...+.|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~---~~~--~~~~~~~~~~~~~~~-~~~~~f 135 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEEN---PDF--AAEFRVGRIEEVIAA-LEEGEF 135 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTS---TTS--EEEEEECCHHHHHHH-CCTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhc---CCC--ceEEEECCHHHHhhh-ccCCCc
Confidence 35689999999999999999999985 789999999988877654332 211 112222333333110 123579
Q ss_pred cEEEec
Q 006172 603 DFVICQ 608 (658)
Q Consensus 603 DLVIGG 608 (658)
|+|++-
T Consensus 136 D~v~~~ 141 (569)
T 4azs_A 136 DLAIGL 141 (569)
T ss_dssp SEEEEE
T ss_pred cEEEEC
Confidence 999864
No 156
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.68 E-value=0.029 Score=48.45 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=33.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 139 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q 139 (658)
..+++..|+.|||+++.|.+|+..++-+ ++.=+++|+.+.
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~ 60 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence 4788999999999999999999666654 588899998764
No 157
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=94.61 E-value=0.054 Score=49.22 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=53.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+. ....+..+|+.+ .....+.+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~ 101 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI 101 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence 45789999999999999999888 3578999999988887776543321 111233444432 11122579
Q ss_pred cEEEecCCCCC
Q 006172 603 DFVICQNSVPQ 613 (658)
Q Consensus 603 DLVIGGpPCQ~ 613 (658)
|+|+...+...
T Consensus 102 D~v~~~~~~~~ 112 (192)
T 1l3i_A 102 DIAVVGGSGGE 112 (192)
T ss_dssp EEEEESCCTTC
T ss_pred CEEEECCchHH
Confidence 99998776543
No 158
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=94.61 E-value=0.074 Score=50.75 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=56.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...+...|. .++++|+++......+......+ ...+..+|+.+.-. ..+.||
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD 136 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD 136 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence 457899999999999999999883 47899999999888777653321 22345667654211 125799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+...++..+.
T Consensus 137 ~v~~~~~~~~~~ 148 (231)
T 1vbf_A 137 RVVVWATAPTLL 148 (231)
T ss_dssp EEEESSBBSSCC
T ss_pred EEEECCcHHHHH
Confidence 999887776553
No 159
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=94.55 E-value=0.045 Score=53.01 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|.. .++++|+++......+.... .....++.+|+.++.. ..+.||
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence 5689999999999999999999873 57899999998877765432 1223356677766542 125788
Q ss_pred EEEecC
Q 006172 604 FVICQN 609 (658)
Q Consensus 604 LVIGGp 609 (658)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 888754
No 160
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=94.55 E-value=0.046 Score=52.18 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K 598 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~-~Ie~l~~--~ 598 (658)
++.+.+||||-||.||++..+.+.+- .|++||+++.. ...+..++.+||++.... .+..... .
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34578999999999999999887754 47899999852 123445678999876532 2222221 0
Q ss_pred cCCccEEEecCCCC
Q 006172 599 LGSIDFVICQNSVP 612 (658)
Q Consensus 599 ~g~~DLVIGGpPCQ 612 (658)
.+.||+|+.-.|++
T Consensus 89 ~~~~D~Vlsd~~~~ 102 (191)
T 3dou_A 89 IEKVDDVVSDAMAK 102 (191)
T ss_dssp CSSEEEEEECCCCC
T ss_pred CCcceEEecCCCcC
Confidence 14899999877654
No 161
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.54 E-value=0.023 Score=49.12 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=32.4
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
.+.+|+.|||+++.|.+|+ ..+..|.+.=+|+|+..
T Consensus 24 ~I~qL~~MGF~~~~a~~AL-~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 24 LIKQLTDMGFPREPAEEAL-KSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHTCCHHHHHHHH-HHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHH-HHcCCCHHHHHHHHHHC
Confidence 7899999999999999999 56667999999999974
No 162
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.51 E-value=0.052 Score=43.14 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=33.6
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
+--|.++|+|||+++-|.+|++.-.. |.+.--.+|+.+..
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 34589999999999999999998766 88888888887643
No 163
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=94.48 E-value=0.043 Score=64.36 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=59.4
Q ss_pred hhhhcccchhhhccc-----ccccCCCCCcccccCCCCChHHHHHHHcC--CceeeEEEeeCCHHHHHHH--HHHhhh--
Q 006172 503 RHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRLG--IKLKGVISIETSETNRRIL--KRWWES-- 571 (658)
Q Consensus 503 gnsfqvdti~~~lsv-----LK~~f~~~l~vLdLFSGiGGlslGL~~aG--i~~k~vvavEid~~a~~t~--k~~~~~-- 571 (658)
|..+....++..+.- +.+..+.+.+|+|.+||.|++-+++.+.. ..-..++++||++.+.+.. +.+...
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 444444444444322 23334567899999999999998876532 2123578999999987776 332211
Q ss_pred --cCCCCCccccccccccChhhHHHhhhccCCccEEEecCCCC
Q 006172 572 --SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 572 --~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
++.....+...|...... ...+.||+|||=||=-
T Consensus 375 LlhGi~~~~I~~dD~L~~~~-------~~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 375 LVSSNNAPTITGEDVCSLNP-------EDFANVSVVVMNPPYV 410 (878)
T ss_dssp TCBTTBCCEEECCCGGGCCG-------GGGTTEEEEEECCBCC
T ss_pred hhcCCCcceEEecchhcccc-------cccCCCCEEEECCCcc
Confidence 000011122334333221 1236799999999863
No 164
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.48 E-value=0.029 Score=48.25 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=33.4
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
.+.+++.|||+++.+.+|+...+ .|.+.=+|+|+...
T Consensus 32 ~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~ 68 (83)
T 2dai_A 32 ALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHA 68 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCC
Confidence 67999999999999999999984 59999999999854
No 165
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=94.45 E-value=0.075 Score=52.07 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
.+.+.+|||+-||.|.+...+.+.+. ..++++|+++......+......+... ..++.+|+.++.. ..+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~ 113 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNE 113 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCC
Confidence 34568999999999999999988853 247899999998887776654332211 3356778776642 125
Q ss_pred CccEEEecCCCCCc
Q 006172 601 SIDFVICQNSVPQI 614 (658)
Q Consensus 601 ~~DLVIGGpPCQ~F 614 (658)
.||+|+...+...+
T Consensus 114 ~fD~i~~~~~~~~~ 127 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI 127 (267)
T ss_dssp CEEEEEESSCGGGT
T ss_pred CEEEEEEcCCceec
Confidence 79999977665443
No 166
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=94.44 E-value=0.079 Score=51.11 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+......+ ....++.+|+.++.. .+.+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~~~fD 107 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERN-LKIEFLQGDVLEIAF---------KNEFD 107 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCCEEEESCGGGCCC---------CSCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcC-CceEEEECChhhccc---------CCCcc
Confidence 4578999999999999999999874 6889999998888776654332 123345677766532 13577
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|+.
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 167
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.38 E-value=0.05 Score=57.69 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=52.9
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC---CCccccccccccChhhHHHhhhccCCc
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT---GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~---g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+||||+||.|.+.+.+.+.+-. ..++++|+++.+.+..+.+....+.. ...+..+|+.+.- ..+.|
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~f 293 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFRF 293 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTCE
T ss_pred CeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCCe
Confidence 68999999999999999988411 24789999999988888766543211 0112445554311 12579
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+..||..
T Consensus 294 D~Ii~nppfh 303 (375)
T 4dcm_A 294 NAVLCNPPFH 303 (375)
T ss_dssp EEEEECCCC-
T ss_pred eEEEECCCcc
Confidence 9999999864
No 168
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=94.38 E-value=0.058 Score=50.44 Aligned_cols=80 Identities=20% Similarity=0.075 Sum_probs=53.4
Q ss_pred hhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 006172 512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 591 (658)
Q Consensus 512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~ 591 (658)
...+..+.. .+.+.+|||+-||.|.+...+.+.|.+ ++++|+++......+. .+.....++.+|+.++.
T Consensus 35 ~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~--- 103 (218)
T 3ou2_A 35 PAALERLRA-GNIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT--- 103 (218)
T ss_dssp HHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC---
T ss_pred HHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC---
Confidence 334444443 334569999999999999999998864 6789999998776654 11122335567776551
Q ss_pred HHHhhhccCCccEEEec
Q 006172 592 FESLIHKLGSIDFVICQ 608 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGG 608 (658)
..+.||+|+..
T Consensus 104 ------~~~~~D~v~~~ 114 (218)
T 3ou2_A 104 ------PDRQWDAVFFA 114 (218)
T ss_dssp ------CSSCEEEEEEE
T ss_pred ------CCCceeEEEEe
Confidence 12467887754
No 169
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=94.37 E-value=0.081 Score=50.94 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=58.6
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
...+.+.+|||+-||.|.+...|.+.|. .++++|+++.+....+.... .....++.+|+.++....- + ...
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~--~-~~~ 122 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ--I-HSE 122 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH--H-HHH
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc--c-ccc
Confidence 3345678899999999999999999886 36899999998887776432 2233456778876643211 0 011
Q ss_pred CCccEEEecCCCCCc
Q 006172 600 GSIDFVICQNSVPQI 614 (658)
Q Consensus 600 g~~DLVIGGpPCQ~F 614 (658)
..+|+|+......-+
T Consensus 123 ~~~d~v~~~~~~~~~ 137 (245)
T 3ggd_A 123 IGDANIYMRTGFHHI 137 (245)
T ss_dssp HCSCEEEEESSSTTS
T ss_pred cCccEEEEcchhhcC
Confidence 248999877655443
No 170
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=94.32 E-value=0.022 Score=55.72 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+|||++||.|.+.+.+.+. + .-..++++|+++.+.+..+.+.
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHH
Confidence 4578999999999999988765 2 1235789999999988777543
No 171
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=94.25 E-value=0.13 Score=49.69 Aligned_cols=81 Identities=10% Similarity=0.078 Sum_probs=57.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||+-||.|.+...+.+.+-. .++++|+++......+......+... ..++.+|+.++.. ..+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence 34579999999999999999888742 57899999998888777654433222 3356678766642 1257
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+.......
T Consensus 115 fD~v~~~~~l~~ 126 (257)
T 3f4k_A 115 LDLIWSEGAIYN 126 (257)
T ss_dssp EEEEEEESCSCC
T ss_pred EEEEEecChHhh
Confidence 999987754443
No 172
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=94.16 E-value=0.056 Score=54.57 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=57.6
Q ss_pred hhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc-------CCCCCcccccc
Q 006172 511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIED 583 (658)
Q Consensus 511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~-------n~~g~l~~~~D 583 (658)
+...+..++...+.+.+|||+-||.|++...+.+.+. .-++++|+++...+..+...... +.....++.+|
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 3334444554445678999999999999998887653 35789999999887776654322 11122345677
Q ss_pred ccccChhhHHHhhhccCCccEEEecC
Q 006172 584 IQALTTKKFESLIHKLGSIDFVICQN 609 (658)
Q Consensus 584 I~~Lt~~~Ie~l~~~~g~~DLVIGGp 609 (658)
+.++.... .+....+.||+|+...
T Consensus 99 ~~~~~~~~--~~~~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 99 SSKELLID--KFRDPQMCFDICSCQF 122 (313)
T ss_dssp TTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred ccccchhh--hcccCCCCEEEEEEec
Confidence 77653100 0000124688888654
No 173
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=94.15 E-value=0.082 Score=52.49 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+.||.|.+.+.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.- ..+.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 181 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD 181 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence 4578999999999999998877 421 2478999999998888776543321 11223455665431 1146
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
||+|+..+|+.
T Consensus 182 ~D~V~~~~~~~ 192 (277)
T 1o54_A 182 VDALFLDVPDP 192 (277)
T ss_dssp EEEEEECCSCG
T ss_pred cCEEEECCcCH
Confidence 99999888765
No 174
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.15 E-value=0.083 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
+.+..|++|||+.++|.+|+...+.+ ++.-..+|+
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn--ve~AaniLl 47 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNN--VEVARSILR 47 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 57999999999999999999998776 344444444
No 175
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=94.10 E-value=0.082 Score=50.26 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+-||.|+....|.++ |. .++++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence 3578999999999999999887 54 47899999998888887776543322 23455666432 22222122
Q ss_pred -CCccEEEecCCCCCc
Q 006172 600 -GSIDFVICQNSVPQI 614 (658)
Q Consensus 600 -g~~DLVIGGpPCQ~F 614 (658)
+.||+|+-..+|..+
T Consensus 131 ~~~fD~v~~d~~~~~~ 146 (223)
T 3duw_A 131 YEPFDFIFIDADKQNN 146 (223)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCCcCEEEEcCCcHHH
Confidence 569999987776643
No 176
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=94.10 E-value=0.055 Score=55.00 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=33.8
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+|||+|||.|..++-|-..|.+ |++||+++.....++.+.
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l 130 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGL 130 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHH
Confidence 78999999999999988888864 789999998665555443
No 177
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=94.10 E-value=0.038 Score=55.72 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL 595 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~-------~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l 595 (658)
.+.+|||++||.|.+++.|-+.|.+ |+++|+++ .+.+..+.+....+... ..++.+|+.++. ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence 4578999999999999999988864 68999999 66655544322111001 223445554321 111
Q ss_pred hhccCCccEEEecCCC
Q 006172 596 IHKLGSIDFVICQNSV 611 (658)
Q Consensus 596 ~~~~g~~DLVIGGpPC 611 (658)
....+.||+|+--||=
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 1101479999987653
No 178
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=94.05 E-value=0.094 Score=53.58 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|++...+.+.+-+-..++++|+++...+..+.+....+.....+..+|+.+... ..+.||
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD 146 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD 146 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence 457999999999999988887764212378999999988877776544322223345667665322 125799
Q ss_pred EEEecCCCCCcc
Q 006172 604 FVICQNSVPQIP 615 (658)
Q Consensus 604 LVIGGpPCQ~FS 615 (658)
+|+...++..+.
T Consensus 147 ~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 147 VIFVTVGVDEVP 158 (317)
T ss_dssp EEEECSBBSCCC
T ss_pred EEEEcCCHHHHH
Confidence 999888876553
No 179
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.05 E-value=0.049 Score=43.40 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
.+-++.|+.|||+++.|.+|+++-|... |+.-+|+|..-
T Consensus 10 ~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHh
Confidence 4458999999999999999999999865 68889988754
No 180
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=94.00 E-value=0.082 Score=49.77 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+.++.. ..+.|
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence 3567999999999999999988762212478999999988887776544332233356677766541 12468
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+...
T Consensus 108 D~v~~~~ 114 (219)
T 3dh0_A 108 DFIFMAF 114 (219)
T ss_dssp EEEEEES
T ss_pred eEEEeeh
Confidence 9998654
No 181
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=93.97 E-value=0.077 Score=52.51 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
-+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+......+. ....++.+|+.++.. + ..+
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~ 135 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-----H--LET 135 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-----G--CSS
T ss_pred CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-----h--cCC
Confidence 345689999999999999999999874 68899999988877765443221 122245677765542 0 125
Q ss_pred CccEEEecCC
Q 006172 601 SIDFVICQNS 610 (658)
Q Consensus 601 ~~DLVIGGpP 610 (658)
.||+|+....
T Consensus 136 ~fD~v~~~~~ 145 (285)
T 4htf_A 136 PVDLILFHAV 145 (285)
T ss_dssp CEEEEEEESC
T ss_pred CceEEEECch
Confidence 7999997543
No 182
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=93.96 E-value=0.1 Score=56.09 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChHHHHHHHcC------------CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT 589 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aG------------i~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~ 589 (658)
.+.+|+|..||.||+.+.+.+.- +....++++|+++.+.++.+.+...++.. ...+..+|......
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 35789999999999988776420 01124789999999888777654333221 22345566543321
Q ss_pred hhHHHhhhccCCccEEEecCCCCCcc
Q 006172 590 KKFESLIHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 590 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS 615 (658)
.+.||+|++-||.....
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRP 267 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCC
T ss_pred ---------cCCcCEEEECCCCCCcc
Confidence 24799999999987654
No 183
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=93.93 E-value=0.12 Score=49.54 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|.+...+.+.+. .++++|+++...+..+.+....+. ....+..+|+.+... ..+.+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~ 159 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF 159 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence 457899999999999998888754 478999999988887776543321 122234566654320 11479
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+..+|
T Consensus 160 D~v~~~~~ 167 (248)
T 2yvl_A 160 HAAFVDVR 167 (248)
T ss_dssp SEEEECSS
T ss_pred cEEEECCc
Confidence 99998665
No 184
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=93.89 E-value=0.09 Score=49.16 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=50.6
Q ss_pred CCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+|||+-||.|.+...+... +. .++++|+++.+....+.+....+.....+..+|+.++.. .+.|
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 133 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPF 133 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCE
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCc
Confidence 468999999999999888876 43 478999999998888776544332223345667765431 2479
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|+|+.
T Consensus 134 D~i~~ 138 (207)
T 1jsx_A 134 DGVIS 138 (207)
T ss_dssp EEEEC
T ss_pred CEEEE
Confidence 99984
No 185
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.89 E-value=0.077 Score=42.74 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=34.0
Q ss_pred chhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 96 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
+.+.+++..|+.|||+ ++.+.+|+.+++-+ ++.-+|+|+..
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 4467899999999996 66789999998865 57889999864
No 186
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=93.86 E-value=0.16 Score=48.71 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+.+.+.+..-. ..++++|+++.+....+.+....+.....++.+|+.++. ..+ ..+.+|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence 4578999999999999998876211 247899999998887776544333223335667776532 111 125689
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
.|+-.+|+.
T Consensus 111 ~v~~~~~~p 119 (213)
T 2fca_A 111 RVYLNFSDP 119 (213)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 888777654
No 187
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.83 E-value=0.074 Score=42.16 Aligned_cols=39 Identities=26% Similarity=0.133 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCCChHH-HHHHHHHhCCCCchHHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eee-v~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
+.+++..|+.|||+.+. +.+|+.+++-+ ++.-+|+|+..
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~ 48 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQS 48 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 56789999999997765 69999998865 68889999976
No 188
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=93.82 E-value=0.12 Score=51.55 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
..+.+|||+.||.|++...+.+. +. .++++|+++...+..+.+.... +.....+..+|+.+.- .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~ 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence 34578999999999999998876 44 4789999999888877765432 2122234556665421 1
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
.+.||+|+...|
T Consensus 177 ~~~fD~Vi~~~~ 188 (275)
T 1yb2_A 177 DQMYDAVIADIP 188 (275)
T ss_dssp SCCEEEEEECCS
T ss_pred CCCccEEEEcCc
Confidence 146999998555
No 189
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.80 E-value=0.076 Score=54.09 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
.+-+|||+|||.|...+++.++|.+ +++||+++.+..+.+..+..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence 4567999999999999999999964 68999999988877765543
No 190
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=93.77 E-value=0.14 Score=50.24 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=57.3
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++.. ..+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence 356789999999999999999888421 2478999999988777766544322233345677766542 1257
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+.......
T Consensus 106 fD~v~~~~~l~~ 117 (276)
T 3mgg_A 106 FDHIFVCFVLEH 117 (276)
T ss_dssp EEEEEEESCGGG
T ss_pred eeEEEEechhhh
Confidence 999997654443
No 191
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.73 E-value=0.11 Score=39.86 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 97 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 97 ~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
.+.+++..|+.|||+ ++.+..|+..++-+ ++.-+|+|+.
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence 467789999999996 56689999998865 5777888874
No 192
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=93.72 E-value=0.14 Score=49.49 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~-n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+.||.|.+...+.+. |-. ..++++|+++...+..+.+.... +.....+..+|+.+.. + ..+.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~ 166 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA 166 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence 4578999999999999999887 411 24789999999888887765433 2122234566776552 1 1146
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
+|+|+..+|+.
T Consensus 167 ~D~v~~~~~~~ 177 (258)
T 2pwy_A 167 YDGVALDLMEP 177 (258)
T ss_dssp EEEEEEESSCG
T ss_pred cCEEEECCcCH
Confidence 99999876654
No 193
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=93.71 E-value=0.095 Score=49.98 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=56.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+.+|||+-||.|.+...+.+. |. -++++|+++......+....... ...++.+|+.++...
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~--------- 107 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE--------- 107 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------
Confidence 345689999999999999999888 54 46889999998887776543221 233556777766431
Q ss_pred CCccEEEecCCCCCc
Q 006172 600 GSIDFVICQNSVPQI 614 (658)
Q Consensus 600 g~~DLVIGGpPCQ~F 614 (658)
+.||+|+......-+
T Consensus 108 ~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 108 EKYDMVVSALSIHHL 122 (234)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCceEEEEeCccccC
Confidence 579999987654443
No 194
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=93.71 E-value=0.068 Score=51.25 Aligned_cols=76 Identities=16% Similarity=0.010 Sum_probs=52.5
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
.+|||+-||.|.+...|.+.|.+ ++++|+++.+....+......+. ....+..+|+.++... +.||+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERF---VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEE---EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 49999999999999999887753 78999999988877765432111 1122456777665421 36899
Q ss_pred EEecCCCCC
Q 006172 605 VICQNSVPQ 613 (658)
Q Consensus 605 VIGGpPCQ~ 613 (658)
|+.......
T Consensus 136 v~~~~~l~~ 144 (235)
T 3lcc_A 136 IFDYVFFCA 144 (235)
T ss_dssp EEEESSTTT
T ss_pred EEEChhhhc
Confidence 887554433
No 195
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=93.61 E-value=0.12 Score=52.15 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=56.8
Q ss_pred hhcccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChh
Q 006172 513 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTK 590 (658)
Q Consensus 513 ~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~ 590 (658)
..+..|.. .+.+.+|||+.||.|.+...|.+. |.+ ++++|+++......+.+....+.. ...++.+|+.++.-
T Consensus 107 ~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~- 181 (312)
T 3vc1_A 107 FLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSR---VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF- 181 (312)
T ss_dssp HHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-
T ss_pred HHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC-
Confidence 34444432 245678999999999999998877 754 689999999888777665443222 23356778776541
Q ss_pred hHHHhhhccCCccEEEec
Q 006172 591 KFESLIHKLGSIDFVICQ 608 (658)
Q Consensus 591 ~Ie~l~~~~g~~DLVIGG 608 (658)
..+.||+|+..
T Consensus 182 -------~~~~fD~V~~~ 192 (312)
T 3vc1_A 182 -------DKGAVTASWNN 192 (312)
T ss_dssp -------CTTCEEEEEEE
T ss_pred -------CCCCEeEEEEC
Confidence 12578988853
No 196
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.60 E-value=0.02 Score=44.11 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
..+.+..|+.|||++..|.+|+..||-+ .+.=+++|++
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~ 41 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS 41 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence 3457899999999999999999999954 3555666653
No 197
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=93.56 E-value=0.11 Score=50.17 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=55.7
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+...+...|. .++++|+++......+......+.....++.+|+.++.. ..+.|
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 88 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSF 88 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcE
Confidence 3567899999999999999988875 478999999988777765543322233355677765541 12579
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+......
T Consensus 89 D~v~~~~~l~ 98 (239)
T 1xxl_A 89 DIITCRYAAH 98 (239)
T ss_dssp EEEEEESCGG
T ss_pred EEEEECCchh
Confidence 9999765443
No 198
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=93.56 E-value=0.08 Score=50.16 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=54.6
Q ss_pred hhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 006172 512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 591 (658)
Q Consensus 512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~ 591 (658)
.+.+..+.... .+.+|||+=||.|.+...|.+.|.+ ++++|+++......+..+.. ...++.+|+.++..
T Consensus 31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~-- 100 (250)
T 2p7i_A 31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQL-- 100 (250)
T ss_dssp HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCC--
T ss_pred HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCc--
Confidence 33444454443 4568999999999999999988864 68899999988777765421 22345667665521
Q ss_pred HHHhhhccCCccEEEecC
Q 006172 592 FESLIHKLGSIDFVICQN 609 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGGp 609 (658)
.+.||+|+...
T Consensus 101 -------~~~fD~v~~~~ 111 (250)
T 2p7i_A 101 -------PRRYDNIVLTH 111 (250)
T ss_dssp -------SSCEEEEEEES
T ss_pred -------CCcccEEEEhh
Confidence 14577777543
No 199
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.56 E-value=0.03 Score=43.17 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=32.1
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
.|..++.|||++..|.+|+...| .|.+.=++.|++
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFACE-KNENLAANFLLS 41 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 57999999999999999999999 699988999874
No 200
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=93.55 E-value=0.13 Score=49.63 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... ........+..+|+.++.. ..+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYR---YIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCE---EEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence 345689999999999999999988853 788999999888777654 1112233355677765531 1246
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 999987654
No 201
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=93.51 E-value=0.13 Score=49.04 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK 590 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~------------n~~g~l~~~~DI~~Lt~~ 590 (658)
+.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+...... ......++.+|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 45679999999999999999999974 789999999988776532110 012334567888887643
Q ss_pred hHHHhhhccCCccEEEe
Q 006172 591 KFESLIHKLGSIDFVIC 607 (658)
Q Consensus 591 ~Ie~l~~~~g~~DLVIG 607 (658)
.. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899885
No 202
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=93.47 E-value=0.11 Score=48.29 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+.+|||+-||.|.+...|.+.|.+ ++++|+++......+... ....++.+|+.++.. ..+.||+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence 578999999999999999999874 688999999877766532 233456777766531 1257999
Q ss_pred EEecC
Q 006172 605 VICQN 609 (658)
Q Consensus 605 VIGGp 609 (658)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 98754
No 203
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.41 E-value=0.12 Score=41.09 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 100 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 100 ~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
..+..|++|||+.++|.+|+...+.+ ++.-.+.|+
T Consensus 11 ~~I~~L~~lGF~r~~ai~AL~~a~nn--ve~Aa~iL~ 45 (53)
T 2d9s_A 11 SEIERLMSQGYSYQDIQKALVIAHNN--IEMAKNILR 45 (53)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 45999999999999999999998776 445444444
No 204
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=93.39 E-value=0.23 Score=49.92 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeC-CHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEi-d~~a~~t~k~~~ 569 (658)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+....+.+.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999985 35789999 899988887765
No 205
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=93.31 E-value=0.11 Score=51.78 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=52.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA 586 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~-----------------~n~~g~l~~~~DI~~ 586 (658)
.+.+|||+=||.|....-|.+.|++ |++||+++.+.+..+..... .......++.+|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4578999999999999999999985 78999999998876543210 001122355678876
Q ss_pred cChhhHHHhhhccCCccEEEe
Q 006172 587 LTTKKFESLIHKLGSIDFVIC 607 (658)
Q Consensus 587 Lt~~~Ie~l~~~~g~~DLVIG 607 (658)
+.... .+.||+|+.
T Consensus 145 l~~~~-------~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRAN-------IGKFDRIWD 158 (252)
T ss_dssp GGGGC-------CCCEEEEEE
T ss_pred CCccc-------CCCEEEEEE
Confidence 65321 257999984
No 206
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=93.31 E-value=0.072 Score=50.19 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=53.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|. .++++|+++.+....+...... ....++.+|+.++.. .+.||
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence 457899999999999999998874 4789999999888877654321 123356778776652 25799
Q ss_pred EEEecC
Q 006172 604 FVICQN 609 (658)
Q Consensus 604 LVIGGp 609 (658)
+|+...
T Consensus 117 ~v~~~~ 122 (216)
T 3ofk_A 117 LIVVAE 122 (216)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999753
No 207
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.27 E-value=0.093 Score=41.57 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=30.5
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
-|.++|+|||+++-|.+|++.-.. |.+.--.+||.+
T Consensus 14 ~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 14 KIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 679999999999999999998766 777766677665
No 208
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=93.24 E-value=0.14 Score=46.25 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...+.+.. +-..++++|+++......+.+....+....+.+.+|..+ .++ ...+.||
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D 96 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD 96 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence 45789999999999999887762 113478999999988887766543322212233444421 111 1116799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+.+.+...
T Consensus 97 ~i~~~~~~~~ 106 (178)
T 3hm2_A 97 VIFIGGGLTA 106 (178)
T ss_dssp EEEECC-TTC
T ss_pred EEEECCcccH
Confidence 9997665543
No 209
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=93.24 E-value=0.08 Score=51.45 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=52.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|.+.+.|..+.-. .-++++|+++.+....+.+....+.....++.+|+.++... ....+.|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCc
Confidence 35678999999999888877743211 23789999998888877765544322233456666554310 0012579
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+...
T Consensus 143 D~V~~~~ 149 (240)
T 1xdz_A 143 DIVTARA 149 (240)
T ss_dssp EEEEEEC
T ss_pred cEEEEec
Confidence 9999644
No 210
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=93.19 E-value=0.07 Score=53.93 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=54.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK 591 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-----------~~g~l~~~~DI~~Lt~~~ 591 (658)
+.+.+||+|.||.|++...+.+.|. .-+.+||+|+...+..+.++ ..+ .+...++.+|..+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~---- 146 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF---- 146 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence 4557899999999999998887753 46889999999998888876 321 11122344554321
Q ss_pred HHHhhhccCCccEEEecCCC
Q 006172 592 FESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGGpPC 611 (658)
+. . .+.||+|+.-+|+
T Consensus 147 l~---~-~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 147 IK---N-NRGFDVIIADSTD 162 (281)
T ss_dssp HH---H-CCCEEEEEEECCC
T ss_pred hc---c-cCCeeEEEECCCC
Confidence 11 1 3579999988876
No 211
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=93.17 E-value=0.23 Score=47.31 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+|||+.||.|.+...|.+. |-. ..++++|+++.+.+..+.+... .....++.+|+.+... + ....+.
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~--~~~v~~~~~d~~~~~~--~---~~~~~~ 143 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEE--RRNIVPILGDATKPEE--Y---RALVPK 143 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSS--CTTEEEEECCTTCGGG--G---TTTCCC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhc--cCCCEEEEccCCCcch--h---hcccCC
Confidence 34578999999999999988765 421 2478999999776655543321 1233355677765321 0 011247
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+...|
T Consensus 144 ~D~v~~~~~ 152 (227)
T 1g8a_A 144 VDVIFEDVA 152 (227)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 999997666
No 212
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=93.13 E-value=0.14 Score=53.89 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+||||.||.|.+.+.+.++|. .-|++||++ ......+.+....+... ..++.+|+.++... +.|
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 130 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV 130 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence 457899999999999999999996 357899999 55455555443322222 23567888776521 579
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+..+
T Consensus 131 D~Iv~~~ 137 (376)
T 3r0q_C 131 DVIISEW 137 (376)
T ss_dssp EEEEECC
T ss_pred eEEEEcC
Confidence 9999744
No 213
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=93.12 E-value=0.14 Score=49.74 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=61.2
Q ss_pred cccchhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006172 507 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA 586 (658)
Q Consensus 507 qvdti~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~ 586 (658)
+...+..++..+.. ..+.+|||+-||.|.+...|.+.+. .++++|+++......+......+.....+..+|+.+
T Consensus 22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 44445555554432 2457899999999999999988874 478999999888777665543322233456778776
Q ss_pred cChhhHHHhhhccCCccEEEecCCCC
Q 006172 587 LTTKKFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 587 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
+.- ..+.||+|+.....+
T Consensus 97 l~~--------~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 97 MPF--------TDERFHIVTCRIAAH 114 (260)
T ss_dssp CCS--------CTTCEEEEEEESCGG
T ss_pred CCC--------CCCCEEEEEEhhhhH
Confidence 541 124799998765443
No 214
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.08 E-value=0.27 Score=41.54 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhcCCC-hHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 97 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 97 ~~~~~~~~lv~MGF~-eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
.+.+++..|+.|||. ++.+.+|+..++-+ ++.-+|+|+..
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~ 68 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGA 68 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence 367799999999995 78889999998865 68889999865
No 215
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=93.03 E-value=0.26 Score=46.62 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=52.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-----g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+.. ...+..+|+..+.. .
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~ 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence 3468999999999999999988732 35789999999988887765432211 12244566643331 1
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
.+.||+|+....
T Consensus 100 ~~~fD~v~~~~~ 111 (217)
T 3jwh_A 100 FHGYDAATVIEV 111 (217)
T ss_dssp GCSCSEEEEESC
T ss_pred CCCcCEEeeHHH
Confidence 256888886543
No 216
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=93.00 E-value=0.11 Score=50.58 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=55.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+.+.+.+.+-. ..+++||+++......+.+....+.....++.+|+.++-. .. ...+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~----~~-~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLH----KM-IPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHH----HH-SCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HH-cCCCChh
Confidence 3568999999999999998876533 2478999999987777665443332233345666654311 11 1236799
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+--+|+.-
T Consensus 108 ~v~~~~~~p~ 117 (218)
T 3dxy_A 108 MVQLFFPDPW 117 (218)
T ss_dssp EEEEESCCCC
T ss_pred eEEEeCCCCc
Confidence 9988776553
No 217
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=92.97 E-value=0.084 Score=40.49 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=30.6
Q ss_pred hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
-+..+++|||+ +..+.+|++..+. |++.-+|+|+.
T Consensus 10 ~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence 46899999995 7789999999985 89999999984
No 218
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=92.94 E-value=0.23 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.0
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCC
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQD 39 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~ 39 (658)
+++..|.+|||+++-|.++|..+-.-
T Consensus 48 ~~l~~L~d~Gfs~~~i~~il~~~P~i 73 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHINELLSVRRGA 73 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCccc
Confidence 47788999999999999999887643
No 219
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=92.92 E-value=0.16 Score=48.84 Aligned_cols=72 Identities=8% Similarity=0.005 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~-~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.. .....++.+|+. .+... ..+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~-------~~~~ 111 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAAR---WAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAG-------LGAP 111 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTT-------CCCC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCc-------CCCC
Confidence 45689999999999999999998863 78999999988777654 223345677874 23210 0257
Q ss_pred ccEEEecC
Q 006172 602 IDFVICQN 609 (658)
Q Consensus 602 ~DLVIGGp 609 (658)
||+|+..+
T Consensus 112 fD~v~~~~ 119 (226)
T 3m33_A 112 FGLIVSRR 119 (226)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99998764
No 220
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=92.88 E-value=0.13 Score=52.38 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+||||-||.|.+++.|.+.|.+ |+++|+++......+...... .+..|+.+++..... ...+.|
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~---~~~~~f 111 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK---ELAGHF 111 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG---GGTTCC
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc---ccCCCc
Confidence 35679999999999999999999974 788999999988877643211 234555555431000 012579
Q ss_pred cEEEecCCCCCcc
Q 006172 603 DFVICQNSVPQIP 615 (658)
Q Consensus 603 DLVIGGpPCQ~FS 615 (658)
|+|+.....+.|.
T Consensus 112 D~Vv~~~~l~~~~ 124 (261)
T 3iv6_A 112 DFVLNDRLINRFT 124 (261)
T ss_dssp SEEEEESCGGGSC
T ss_pred cEEEEhhhhHhCC
Confidence 9999876555443
No 221
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=92.83 E-value=0.22 Score=46.89 Aligned_cols=73 Identities=22% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.... ....+..+|+.++... +.||
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 4578999999999999999999864 6889999998877765432 1233567788776421 5799
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+......
T Consensus 109 ~v~~~~~l~ 117 (220)
T 3hnr_A 109 TIVSTYAFH 117 (220)
T ss_dssp EEEEESCGG
T ss_pred EEEECcchh
Confidence 999775443
No 222
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=92.82 E-value=0.12 Score=51.50 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=52.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+-||.|...+.+..+.=. .-|+++|+++.+....+.+....+.....++.+|+.++.... ...+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence 45689999999999888887765211 247899999999888887665443222334556665543210 012579
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99985
No 223
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=92.81 E-value=0.084 Score=50.92 Aligned_cols=76 Identities=20% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.+. ..++++|+++......+......+.....++..|+.++.. ..+.||
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence 467999999999999998887763 3578999999998887765443211111234566655432 124699
Q ss_pred EEEecC
Q 006172 604 FVICQN 609 (658)
Q Consensus 604 LVIGGp 609 (658)
+|+...
T Consensus 149 ~v~~~~ 154 (241)
T 2ex4_A 149 VIWIQW 154 (241)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998653
No 224
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=92.79 E-value=0.14 Score=51.27 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=51.5
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~---~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
-+||||-||.|.+...|.+.|.+ ++++|+++......+......+. ....++.+|+.++.. .+.|
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f 151 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF 151 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence 48999999999999999999874 68899999988887765543210 123356788877642 2578
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|+|+.
T Consensus 152 D~v~~ 156 (299)
T 3g2m_A 152 GTVVI 156 (299)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 97774
No 225
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=92.78 E-value=0.099 Score=58.22 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=54.4
Q ss_pred CCCcccccCCCCChHHHHHHHc----CC-------------ceeeEEEeeCCHHHHHHHHHHhhhcCCCC-----Ccccc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNRRILKRWWESSGQTG-----ELVQI 581 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a----Gi-------------~~k~vvavEid~~a~~t~k~~~~~~n~~g-----~l~~~ 581 (658)
.+.+|+|..||.|||-+.+.+. +- ....++++|+++.+.++.+.+..-++... ..+..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 4689999999999998776532 10 11258999999999887776543332221 22344
Q ss_pred ccccccChhhHHHhhhccCCccEEEecCCCCCcc
Q 006172 582 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP 615 (658)
Q Consensus 582 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS 615 (658)
+|.-.. . ....+.||+|++-||.....
T Consensus 249 gDtL~~--~-----~~~~~~fD~Vv~NPPf~~~~ 275 (541)
T 2ar0_A 249 GNTLGS--D-----GENLPKAHIVATNPPFGSAA 275 (541)
T ss_dssp SCTTSH--H-----HHTSCCEEEEEECCCCTTCS
T ss_pred CCCccc--c-----cccccCCeEEEECCCccccc
Confidence 543211 1 11236799999999987654
No 226
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=92.77 E-value=0.15 Score=51.37 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172 521 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 521 ~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
..+.+.+|||+-||.|.+...+..+..+-..++++|+++......+.+....+... ..++.+|+.++.. .
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~- 185 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R- 185 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence 34567899999999999988873222222357899999999888877654322111 2245677766542 1
Q ss_pred CCccEEEecC
Q 006172 600 GSIDFVICQN 609 (658)
Q Consensus 600 g~~DLVIGGp 609 (658)
+.||+|+...
T Consensus 186 ~~fD~v~~~~ 195 (305)
T 3ocj_A 186 EGYDLLTSNG 195 (305)
T ss_dssp SCEEEEECCS
T ss_pred CCeEEEEECC
Confidence 5688888533
No 227
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=92.76 E-value=0.22 Score=47.17 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=53.7
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL- 599 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~- 599 (658)
+.+|||+-||.|..++.|.+. +. .++++|+++......+.++...+... ..++.+|+.+. +..+....
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~ 137 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ 137 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence 468999999999999998876 44 47899999999888888776543222 22445665432 11111111
Q ss_pred -CCccEEEecCCC
Q 006172 600 -GSIDFVICQNSV 611 (658)
Q Consensus 600 -g~~DLVIGGpPC 611 (658)
+.||+|+--+|.
T Consensus 138 ~~~fD~v~~~~~~ 150 (225)
T 3tr6_A 138 AWQYDLIYIDADK 150 (225)
T ss_dssp TTCEEEEEECSCG
T ss_pred CCCccEEEECCCH
Confidence 679999965553
No 228
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=92.71 E-value=0.17 Score=52.02 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
+++-+||+|-||.|++...+.+.. ...-+.+||||+...+..+.++...+ .+...++.+|..+.-..
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 456799999999999998888762 23467899999999998888765321 22334567777654211
Q ss_pred ccCCccEEEecCCC
Q 006172 598 KLGSIDFVICQNSV 611 (658)
Q Consensus 598 ~~g~~DLVIGGpPC 611 (658)
..+.||+||.-+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999986553
No 229
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=92.70 E-value=0.14 Score=48.67 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
++.+.+|||+-||.|.+...+.+. . .++++|+++......+......+ ....+...|+.++.. .+.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~ 96 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP 96 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence 444579999999999999888777 3 47899999998887776654322 223345677765532 146
Q ss_pred ccEEEec
Q 006172 602 IDFVICQ 608 (658)
Q Consensus 602 ~DLVIGG 608 (658)
+|+|+..
T Consensus 97 fD~v~~~ 103 (243)
T 3d2l_A 97 VDAITIL 103 (243)
T ss_dssp EEEEEEC
T ss_pred cCEEEEe
Confidence 8888854
No 230
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=92.65 E-value=0.26 Score=46.56 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=37.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
.+.+|||+-||.|.+...|.+.|-. ..++++|+++.+....+..+.
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence 3568999999999999999988732 357899999999888877654
No 231
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=92.65 E-value=0.23 Score=46.74 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+...-. ..+.||
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD 148 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD 148 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence 457999999999999988887652112478999999988877766543322222244556532111 125799
Q ss_pred EEEecCCCCCc
Q 006172 604 FVICQNSVPQI 614 (658)
Q Consensus 604 LVIGGpPCQ~F 614 (658)
+|+...++..+
T Consensus 149 ~v~~~~~~~~~ 159 (215)
T 2yxe_A 149 RIYTTAAGPKI 159 (215)
T ss_dssp EEEESSBBSSC
T ss_pred EEEECCchHHH
Confidence 99988776654
No 232
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=92.64 E-value=0.12 Score=49.55 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=58.6
Q ss_pred hhcccccccCCCCCcccccCCCCChHHHHHHH-cCC-----ceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCcccc
Q 006172 513 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQI 581 (658)
Q Consensus 513 ~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~-aGi-----~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~ 581 (658)
..+..|......+.+|||+-||.|.+...|.+ .|. . ..++++|+++...+..+.+....+ .....+..
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 33444443345567999999999999988776 342 0 147899999998877766543211 11122455
Q ss_pred ccccccChhhHHHhhhccCCccEEEecCCCCCc
Q 006172 582 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQI 614 (658)
Q Consensus 582 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F 614 (658)
+|+.+.-. ..+.||+|+...++..+
T Consensus 152 ~d~~~~~~--------~~~~fD~I~~~~~~~~~ 176 (227)
T 1r18_A 152 GDGRKGYP--------PNAPYNAIHVGAAAPDT 176 (227)
T ss_dssp SCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred CCcccCCC--------cCCCccEEEECCchHHH
Confidence 66654111 12579999988887655
No 233
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=92.61 E-value=0.23 Score=47.93 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=53.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+.||.|.+...+.+.+- ..++++|+++......+.+....+.....+..+|+. .. + ...+.||
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~----~~~~~fD 160 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---F----PPKAPYD 160 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---C----GGGCCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---C----CCCCCcc
Confidence 456899999999999988887652 247899999998887776654332222223455551 11 1 1124599
Q ss_pred EEEecCCCCCc
Q 006172 604 FVICQNSVPQI 614 (658)
Q Consensus 604 LVIGGpPCQ~F 614 (658)
+|+...++..+
T Consensus 161 ~Ii~~~~~~~~ 171 (235)
T 1jg1_A 161 VIIVTAGAPKI 171 (235)
T ss_dssp EEEECSBBSSC
T ss_pred EEEECCcHHHH
Confidence 99987776654
No 234
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=92.60 E-value=0.12 Score=52.78 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
+.+.+||+|.||.|++...+.+. +. .-+++||+|+...+..+.++... +.+...++.+|+.+.-. .
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence 35578999999999999888876 33 45789999999988888776321 11222345566543211 1
Q ss_pred ccCCccEEEecCCCC
Q 006172 598 KLGSIDFVICQNSVP 612 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ 612 (658)
..+.||+|+..+||.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999888774
No 235
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=92.55 E-value=0.09 Score=49.97 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
|+.+.+.+.+|||+-||.|.+...|.+.|. .++++|+++......+... ....++.+|+.++..
T Consensus 34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 97 (239)
T 3bxo_A 34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-------- 97 (239)
T ss_dssp HHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC--------
T ss_pred HHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc--------
Confidence 444345678999999999999999998875 4678999999887776542 122345667765531
Q ss_pred ccCCccEEEe
Q 006172 598 KLGSIDFVIC 607 (658)
Q Consensus 598 ~~g~~DLVIG 607 (658)
.+.+|+|+.
T Consensus 98 -~~~~D~v~~ 106 (239)
T 3bxo_A 98 -GRKFSAVVS 106 (239)
T ss_dssp -SSCEEEEEE
T ss_pred -CCCCcEEEE
Confidence 146788773
No 236
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=92.52 E-value=0.16 Score=52.84 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=51.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+...+.++|. .-|+++|+++ .....+......+... ..++.+|+.++.. ..+.|
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence 457899999999999999999986 3578999996 4444444333222222 2356778877632 12579
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+.-++
T Consensus 135 D~Iis~~~ 142 (349)
T 3q7e_A 135 DIIISEWM 142 (349)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99997543
No 237
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=92.51 E-value=0.15 Score=50.11 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=54.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
.+.+.+|||+-||.|++...+.+.|. ..++++|+++......+......+. ....++.+|+.++... ..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~ 132 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK 132 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence 34668999999999999999988885 2478999999998887776543221 1123456677655310 124
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 133 ~fD~v~~~~ 141 (298)
T 1ri5_A 133 EFDVISSQF 141 (298)
T ss_dssp CEEEEEEES
T ss_pred CcCEEEECc
Confidence 688887654
No 238
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=92.49 E-value=0.26 Score=49.32 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+-||.|++...+.+. |.+ ++++|+++......+......+.. ...+..+|+.++ .+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence 35679999999999999988877 853 789999999888777765543322 223556777665 15
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 799998654
No 239
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=92.47 E-value=0.24 Score=48.05 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=58.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|...+.|.+++- -..++++|+++...+..+.++...+.. ...++.+|+.+.-.. .+ .+.|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence 346899999999999999988432 235789999999988888877654332 233556777654220 11 2579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+-..++...
T Consensus 144 D~V~~~~~~~~~ 155 (232)
T 3ntv_A 144 DMIFIDAAKAQS 155 (232)
T ss_dssp EEEEEETTSSSH
T ss_pred cEEEEcCcHHHH
Confidence 999977766654
No 240
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.42 E-value=0.081 Score=42.25 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=34.3
Q ss_pred hhhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 14 NLRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 14 ~l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
+...+|..||| ..++-.+|++.+|. |.+..++.||+..
T Consensus 11 ~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 11 ALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhcc
Confidence 36689999999 99999999999988 8999999999864
No 241
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=92.30 E-value=0.18 Score=53.98 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-----C---CCccccccccccChhhHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-----T---GELVQIEDIQALTTKKFES 594 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-----~---g~l~~~~DI~~Lt~~~Ie~ 594 (658)
|++-+||+|++|.||+..-+.+.+. .-+..||||+...+..+.|+...+. + ...++.+|..+. +..
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~----L~~ 260 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKR 260 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHH----HHh
Confidence 5678999999999999988877774 5678999999999999988753221 0 122445555432 111
Q ss_pred hhhccCCccEEEecCCC
Q 006172 595 LIHKLGSIDFVICQNSV 611 (658)
Q Consensus 595 l~~~~g~~DLVIGGpPC 611 (658)
+....+.||+||--+|=
T Consensus 261 ~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 261 YAKEGREFDYVINDLTA 277 (364)
T ss_dssp HHHHTCCEEEEEEECCS
T ss_pred hhccCCCceEEEECCCC
Confidence 11123679999988764
No 242
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=92.28 E-value=0.27 Score=49.03 Aligned_cols=53 Identities=23% Similarity=0.118 Sum_probs=42.8
Q ss_pred cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172 519 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 572 (658)
Q Consensus 519 K~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~ 572 (658)
.++.+.+.+|+|+=||.|-+.+.+.+.|.. ..|+++|+++.+....+.+-...
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~ 62 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH 62 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 344556789999999999999999998843 46889999999988888765443
No 243
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=92.27 E-value=0.24 Score=48.64 Aligned_cols=79 Identities=22% Similarity=0.225 Sum_probs=53.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~-n--~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+.||.|.+...+.+. |-. ..++++|+++......+.+.... + .....+..+|+.++.. ..
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~ 169 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD 169 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence 4568999999999999998874 311 24789999999888777765432 1 1122345677765521 12
Q ss_pred CCccEEEecCCC
Q 006172 600 GSIDFVICQNSV 611 (658)
Q Consensus 600 g~~DLVIGGpPC 611 (658)
+.||+|+...|.
T Consensus 170 ~~~D~v~~~~~~ 181 (280)
T 1i9g_A 170 GSVDRAVLDMLA 181 (280)
T ss_dssp TCEEEEEEESSC
T ss_pred CceeEEEECCcC
Confidence 479999986653
No 244
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=92.19 E-value=0.11 Score=58.07 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=52.1
Q ss_pred CCCcccccCCCCChHHHHHHHc-C-CceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-G-i~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++.. ...+..+|.-..+ .. ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d---~p--~~~~ 295 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED---WP--TQEP 295 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC---SC--CSSC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc---cc--cccc
Confidence 4679999999999998776543 1 01135889999999888777654333211 1123445533221 00 0123
Q ss_pred CCccEEEecCCCC
Q 006172 600 GSIDFVICQNSVP 612 (658)
Q Consensus 600 g~~DLVIGGpPCQ 612 (658)
..||+|+|-||-.
T Consensus 296 ~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 296 TNFDGVLMNPPYS 308 (542)
T ss_dssp CCBSEEEECCCTT
T ss_pred ccccEEEecCCcC
Confidence 5799999999865
No 245
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=92.03 E-value=0.32 Score=46.88 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+||||-||.|.+...|.+. | . ..++++|+++.+.+..+.+... .....++.+|+.+... .....+.
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~-----~~~~~~~ 143 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQE-----YANIVEK 143 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGG-----GTTTSCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCccc-----ccccCcc
Confidence 35678999999999999888765 5 2 3578999999988777654322 1223345677765211 0001157
Q ss_pred ccEEEec
Q 006172 602 IDFVICQ 608 (658)
Q Consensus 602 ~DLVIGG 608 (658)
||+|+..
T Consensus 144 ~D~v~~~ 150 (230)
T 1fbn_A 144 VDVIYED 150 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999843
No 246
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=92.00 E-value=0.21 Score=48.04 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||+-||.|.+...+.+. |. .++++|+++......+...... ....++.+|+.++.. ..+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence 35679999999999999998886 65 3788999999887776543211 223345677766531 1257
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+....
T Consensus 121 fD~v~~~~~ 129 (266)
T 3ujc_A 121 FDLIYSRDA 129 (266)
T ss_dssp EEEEEEESC
T ss_pred EEEEeHHHH
Confidence 899886543
No 247
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=91.98 E-value=0.2 Score=48.18 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|++...+.+..- -..++++|+++...+..+.++...+.. ...+..+|+.+.- .... ..+.|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence 346899999999999998887621 124789999999988888776544321 1224456665431 1110 12579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+...||...
T Consensus 128 D~I~~~~~~~~~ 139 (233)
T 2gpy_A 128 DVLFIDAAKGQY 139 (233)
T ss_dssp EEEEEEGGGSCH
T ss_pred cEEEECCCHHHH
Confidence 999998888543
No 248
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=91.98 E-value=0.25 Score=46.96 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...+.+.|.. .++++|+++......+..... .+..+..+|+.++.. ..+.||
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence 4578999999999999999999862 478899999988777654321 122345566665431 124688
Q ss_pred EEEecCC
Q 006172 604 FVICQNS 610 (658)
Q Consensus 604 LVIGGpP 610 (658)
+|+....
T Consensus 110 ~v~~~~~ 116 (243)
T 3bkw_A 110 LAYSSLA 116 (243)
T ss_dssp EEEEESC
T ss_pred EEEEecc
Confidence 8886543
No 249
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=91.92 E-value=0.17 Score=48.81 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.+. ..++++|+++...+..+.+.... .....++.+|+.++.. .+ .-+.||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~----~~--~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAP----TL--PDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGG----GS--CTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhc----cc--CCCceE
Confidence 467899999999999999977765 35789999999988877754332 1222244566554311 00 125799
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+|+.
T Consensus 131 ~V~~ 134 (236)
T 1zx0_A 131 GILY 134 (236)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9997
No 250
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=91.89 E-value=0.18 Score=50.96 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
+++.+||+|.||.|++...+.+. |. .-+.+||+|+...+..+.++... +.+...++.+|..+. +. .
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence 45689999999999999888776 43 45789999999999888876431 112233455665431 11 1
Q ss_pred ccCCccEEEecCCC
Q 006172 598 KLGSIDFVICQNSV 611 (658)
Q Consensus 598 ~~g~~DLVIGGpPC 611 (658)
..+.+|+|+..+|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999987765
No 251
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=91.86 E-value=0.37 Score=45.77 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G 600 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~--g 600 (658)
.+.+|||+.||.|...+.+.++.-+-..++++|+++......+.++...+.. ...++.+|+.+. +..+.... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence 3468999999999999998875110124789999999988888877654321 222345565432 12221111 5
Q ss_pred CccEEEecCCCC
Q 006172 601 SIDFVICQNSVP 612 (658)
Q Consensus 601 ~~DLVIGGpPCQ 612 (658)
.||+|+.-+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999877644
No 252
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=91.84 E-value=0.31 Score=48.82 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=42.4
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 572 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~ 572 (658)
++.+.+-+|+|+=||.|-+.+.+.+.|.. ..|+++|+++.+....+.+-...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~ 68 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEH 68 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred HhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence 34456688999999999999999999843 46889999999998888765543
No 253
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=91.82 E-value=0.19 Score=57.80 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=54.1
Q ss_pred CCCcccccCCCCChHHHHHHHcC------Cc-----------------------------------eeeEEEeeCCHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR 562 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvavEid~~a~ 562 (658)
.+.++||.|||.|++.+.+-..+ +. -..++++|+|+.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45789999999999976554432 10 02478999999999
Q ss_pred HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEecCCC
Q 006172 563 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 563 ~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC 611 (658)
+.-+.+....+... ..+..+|+.++.... ..+.+|+||.-||=
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY 313 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY 313 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence 88888765543221 224567776654210 11379999999984
No 254
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=91.79 E-value=0.18 Score=48.20 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-- 598 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~-- 598 (658)
+.+||||.||.|..++.+.++ |. .++++|+++......+.++...+... ..++.+|+.++- +.+...
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~ 131 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD 131 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence 468999999999999988874 43 47899999999888888765443211 224456654321 111111
Q ss_pred cCCccEEEecCCCCCc
Q 006172 599 LGSIDFVICQNSVPQI 614 (658)
Q Consensus 599 ~g~~DLVIGGpPCQ~F 614 (658)
.+.||+|+-..++..+
T Consensus 132 ~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRY 147 (221)
T ss_dssp CCCCSEEEECSCGGGH
T ss_pred CCceEEEEEcCCcccc
Confidence 1579999877666554
No 255
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=91.72 E-value=0.14 Score=41.20 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=31.8
Q ss_pred hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
-+..+++|||+ ++.+.+|++..+. |++.-+|+|+..
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~ 56 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 56899999995 7799999999985 999999999973
No 256
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=91.62 E-value=0.36 Score=49.91 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+-+||||-||.|.+...+.+.|-.. .++++|+++.+....+.+....+.. ..+..+|+.+.. .+.||+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence 3589999999999999998887432 4678999999888777765443222 223455654321 257999
Q ss_pred EEecCCCC
Q 006172 605 VICQNSVP 612 (658)
Q Consensus 605 VIGGpPCQ 612 (658)
|+..+|..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99988865
No 257
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=91.62 E-value=0.2 Score=48.95 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+.+|||+-||.|.+...|.+.|.+ ++++|+++...+..+.... + .+...|+.++.. ..+.
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~-~~~~~d~~~~~~--------~~~~ 114 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----K-NVVEAKAEDLPF--------PSGA 114 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----S-CEEECCTTSCCS--------CTTC
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----C-CEEECcHHHCCC--------CCCC
Confidence 345679999999999999999998864 6889999998877665321 1 256677776541 1257
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+...+
T Consensus 115 fD~v~~~~~ 123 (260)
T 2avn_A 115 FEAVLALGD 123 (260)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEcch
Confidence 999986543
No 258
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=91.58 E-value=0.24 Score=46.32 Aligned_cols=76 Identities=24% Similarity=0.164 Sum_probs=51.4
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
|+.+.+.+.+|||+-||.|.+...+ |+ ..++++|+++...+..+... ....+..+|+.++..
T Consensus 30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------- 91 (211)
T 2gs9_A 30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF-------- 91 (211)
T ss_dssp HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence 3344446689999999999988777 65 24789999999877766543 223355677766531
Q ss_pred ccCCccEEEecCCC
Q 006172 598 KLGSIDFVICQNSV 611 (658)
Q Consensus 598 ~~g~~DLVIGGpPC 611 (658)
..+.||+|+....-
T Consensus 92 ~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 92 PGESFDVVLLFTTL 105 (211)
T ss_dssp CSSCEEEEEEESCT
T ss_pred CCCcEEEEEEcChh
Confidence 12479999866443
No 259
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.58 E-value=0.23 Score=44.52 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=34.0
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 97 LHIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 97 ~~~~~~~~lv~M-GF~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
...+++..|+.| ||++++|..|+.+|+-| ++.-+++|+..
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg 78 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence 367889999999 99999999999999887 46677777754
No 260
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=91.50 E-value=0.13 Score=51.57 Aligned_cols=76 Identities=21% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|.++..|.+.|- .-++++|+|+.....++.. ......++.+|+.+++-..+ .+ ..
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~------~~-~~ 97 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSL------GK-EL 97 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGS------CS-SE
T ss_pred CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHc------cC-Cc
Confidence 356899999999999999998862 2478999999988877643 12223467789988865432 12 33
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+|-+|=+
T Consensus 98 ~vv~NlPy~ 106 (249)
T 3ftd_A 98 KVVGNLPYN 106 (249)
T ss_dssp EEEEECCTT
T ss_pred EEEEECchh
Confidence 777877754
No 261
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.48 E-value=0.13 Score=43.45 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=31.8
Q ss_pred hhhhhccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGF-SPSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF-~~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
-+..++.||| .++.|.+||+..+. |++.-+|+|+.
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~ 67 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALVATDG-DIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 5699999999 58999999999885 99999999997
No 262
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=91.43 E-value=0.33 Score=50.42 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+.+.+.++|. .-|+++|+++.+ ...+......+. ....++.+|+.++.. .+.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence 456899999999999999999886 357899999744 344443322221 122355677776531 1479
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+...+
T Consensus 118 D~Ivs~~~ 125 (348)
T 2y1w_A 118 DIIISEPM 125 (348)
T ss_dssp EEEEECCC
T ss_pred eEEEEeCc
Confidence 99998765
No 263
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=91.40 E-value=0.25 Score=46.13 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=50.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+.. ....+...|+.++..... ...+.||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----PVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS----CCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc----ccCCCcc
Confidence 3478999999999999999999874 68899999987776643 112244555554421100 0113488
Q ss_pred EEEecCCCC
Q 006172 604 FVICQNSVP 612 (658)
Q Consensus 604 LVIGGpPCQ 612 (658)
+|+......
T Consensus 119 ~v~~~~~l~ 127 (227)
T 3e8s_A 119 LICANFALL 127 (227)
T ss_dssp EEEEESCCC
T ss_pred EEEECchhh
Confidence 888765444
No 264
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=91.39 E-value=0.3 Score=39.05 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
.++.+..|+.|||+.+.|.+|+.....|- +.-.+.|+.
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv--~~AtNiLlE 44 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNI--EMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCS--HHHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccH--HHHHHHHHH
Confidence 45689999999999999999999988774 444444443
No 265
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=91.28 E-value=0.16 Score=45.08 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g 600 (658)
..+.+|||+-||.|++...+.+. |-. ..++++|+++ .... ....+...|+.++.. +.+.... ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence 34578999999999999988876 422 2467899998 4211 122245667765431 0111111 125
Q ss_pred CccEEEecCCCCCcc
Q 006172 601 SIDFVICQNSVPQIP 615 (658)
Q Consensus 601 ~~DLVIGGpPCQ~FS 615 (658)
.||+|+..+|+..+.
T Consensus 88 ~~D~i~~~~~~~~~~ 102 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSG 102 (180)
T ss_dssp CEEEEEECCCCCCCS
T ss_pred ceeEEEECCCccccC
Confidence 799999999887654
No 266
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=91.27 E-value=0.23 Score=49.58 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+-.|||+|||.|...++..++|-+ ++++|+++.+..+.+..+
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~ 254 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVL 254 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHH
Confidence 4567999999999999999999964 678999999888776654
No 267
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.19 E-value=0.29 Score=38.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.8
Q ss_pred hhhhhhccCCCCHH-HHHHHHHHhCCCCHHHHHHHHHHH
Q 006172 14 NLRSSFIGMGFSPS-LVDKVIEEKGQDNVDLLLETLIEY 51 (658)
Q Consensus 14 ~l~~~fi~MGF~~e-~V~KAIqe~Ge~d~d~iLE~LLty 51 (658)
.-+..+..|||+.+ .+.+|++..+- |++.-+|+|+..
T Consensus 11 ~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 35699999999664 67999999985 999999999975
No 268
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=91.16 E-value=0.4 Score=48.48 Aligned_cols=52 Identities=12% Similarity=-0.104 Sum_probs=42.2
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 572 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~ 572 (658)
++.+.+-+|+|+=||.|-+.+.+.+.|. ...++++|+++.+....+.+-...
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~ 68 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS 68 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3445668999999999999999999984 346889999999988888765443
No 269
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=91.15 E-value=0.42 Score=45.98 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=49.8
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+=||.|.+...|.+. |.+ ++++|+++......+......+.. ...++.+|+.++.. .+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 102 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NE 102 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CC
Confidence 35678999999999999888765 653 589999999887777655432211 12345677765542 14
Q ss_pred CccEEEe
Q 006172 601 SIDFVIC 607 (658)
Q Consensus 601 ~~DLVIG 607 (658)
.||+|+.
T Consensus 103 ~fD~V~~ 109 (256)
T 1nkv_A 103 KCDVAAC 109 (256)
T ss_dssp CEEEEEE
T ss_pred CCCEEEE
Confidence 6787775
No 270
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=91.00 E-value=0.21 Score=48.02 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=51.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+-||.|.+...|.+.|. ..+.++|+++......+...... ....++.+|+.++.. ..+.||
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence 467899999999999999888874 35789999999888877654321 122345667665531 124689
Q ss_pred EEEecC
Q 006172 604 FVICQN 609 (658)
Q Consensus 604 LVIGGp 609 (658)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 888644
No 271
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=91.00 E-value=0.46 Score=46.66 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+-||.|+..+.+.++ +. .++++|+++......+.++...+... ..++.+|+.+. +..+ ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence 3578999999999999998876 43 47899999999888888776543221 22345565432 1111 112
Q ss_pred CCccEEEecCCCCC
Q 006172 600 GSIDFVICQNSVPQ 613 (658)
Q Consensus 600 g~~DLVIGGpPCQ~ 613 (658)
+.||+|+-..++..
T Consensus 135 ~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 135 PAFDLIFIDADKPN 148 (248)
T ss_dssp CCCSEEEECSCGGG
T ss_pred CCeEEEEECCchHH
Confidence 47999997776654
No 272
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=90.97 E-value=0.38 Score=46.25 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=49.0
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.|++...|.+. |-. ..++++|+++.+...+...-.. + ....++.+|+.+... +. ...+.|
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~ 148 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV 148 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence 4578999999999999888765 311 2478999998754433332211 1 233356677765321 11 112579
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+..+|
T Consensus 149 D~V~~~~~ 156 (233)
T 2ipx_A 149 DVIFADVA 156 (233)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99998555
No 273
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=90.94 E-value=0.49 Score=43.86 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=53.4
Q ss_pred cccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006172 527 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 527 ~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
+|||+-||.|.+...+.+. |. .++++|+++......+......+.. ...++.+|+.++.. ..+.||+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence 8999999999999999887 43 4789999999888877765443322 22356677776541 1257999
Q ss_pred EEecCCCC
Q 006172 605 VICQNSVP 612 (658)
Q Consensus 605 VIGGpPCQ 612 (658)
|+......
T Consensus 115 v~~~~~l~ 122 (219)
T 3dlc_A 115 IVSRGSVF 122 (219)
T ss_dssp EEEESCGG
T ss_pred EEECchHh
Confidence 99765443
No 274
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=90.94 E-value=0.2 Score=55.96 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=49.1
Q ss_pred CcccccCCCCChHHHHHHHc--------CC------ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 006172 526 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK 590 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~a--------Gi------~~k~vvavEid~~a~~t~k~~~~~~n~~g~l-~~~~DI~~Lt~~ 590 (658)
.+|+|.+||.|||-+.+.+. +. .-..++++|+++.+.++.+.+..-++....+ +..+|.-....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~- 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ- 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence 48999999999998776321 10 0135789999999988877654433322111 13444321110
Q ss_pred hHHHhhhccCCccEEEecCCCC
Q 006172 591 KFESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 591 ~Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
.....||+|++-||=.
T Consensus 325 ------~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 325 ------HPDLRADFVMTNPPFN 340 (544)
T ss_dssp ------CTTCCEEEEEECCCSS
T ss_pred ------cccccccEEEECCCcC
Confidence 0125799999999854
No 275
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=90.86 E-value=0.57 Score=43.51 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChH-HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGA-EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGl-slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+.+|||+-||.|.+ ...+...|.+ ++++|+++.+.+..+......+ ....+...|+.++.. ..+.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~ 89 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYK---TYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDES 89 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCE---EEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCc
Confidence 3457899999999887 3455677764 6889999998887776554322 223355677766541 1246
Q ss_pred ccEEEecC
Q 006172 602 IDFVICQN 609 (658)
Q Consensus 602 ~DLVIGGp 609 (658)
||+|+...
T Consensus 90 fD~v~~~~ 97 (209)
T 2p8j_A 90 MSFVYSYG 97 (209)
T ss_dssp EEEEEECS
T ss_pred eeEEEEcC
Confidence 89988654
No 276
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=90.85 E-value=0.35 Score=45.22 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=48.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+.+|||+-||.|.+...+.+.|. .++++|+++......+... ..+...|+.++... + ..+.|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~-~-----~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMP-Y-----EEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCC-S-----CTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCC-C-----CCCcc
Confidence 4568999999999999999998874 4788999999876655321 12445666543210 0 11467
Q ss_pred cEEEecCCC
Q 006172 603 DFVICQNSV 611 (658)
Q Consensus 603 DLVIGGpPC 611 (658)
|+|+.....
T Consensus 95 D~v~~~~~l 103 (230)
T 3cc8_A 95 DCVIFGDVL 103 (230)
T ss_dssp EEEEEESCG
T ss_pred CEEEECChh
Confidence 887765433
No 277
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=90.84 E-value=0.47 Score=47.70 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+-||.|++...+.+. |.+ ++++|+++......+......+.. ...+..+|+.++. +
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 154 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E 154 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence 35678999999999999888876 863 688999999888777655432211 1224456665542 4
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 155 ~fD~v~~~~ 163 (318)
T 2fk8_A 155 PVDRIVSIE 163 (318)
T ss_dssp CCSEEEEES
T ss_pred CcCEEEEeC
Confidence 688887654
No 278
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=90.80 E-value=0.5 Score=36.52 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
-+..+..|+.|||+.+.|.+|+.....+ |+.-.+.|+
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nn--ie~A~nIL~ 40 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNN--IEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhcc--HHHHHHHHH
Confidence 4567899999999999999999998776 455444444
No 279
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=90.80 E-value=0.39 Score=49.82 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+++.+.++|. .-++++|+++ .....+......+. ....++.+|+.++.. ..+.+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 132 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV 132 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence 456899999999999999999985 3578999997 55555554433222 223355677776531 12479
Q ss_pred cEEEecC
Q 006172 603 DFVICQN 609 (658)
Q Consensus 603 DLVIGGp 609 (658)
|+|+...
T Consensus 133 D~Ivs~~ 139 (340)
T 2fyt_A 133 DVIISEW 139 (340)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9999654
No 280
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=90.78 E-value=0.44 Score=45.81 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=53.0
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+-||.|.+...+.+. |.+ ++++|+++......+.. .....+..+|+.++.. .+.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~---v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~ 95 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNV---ITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK 95 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTS---EEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence 4578999999999999998877 653 78899999987776653 1223356777776541 246
Q ss_pred ccEEEecCCCCCc
Q 006172 602 IDFVICQNSVPQI 614 (658)
Q Consensus 602 ~DLVIGGpPCQ~F 614 (658)
||+|+.....+-+
T Consensus 96 fD~v~~~~~l~~~ 108 (259)
T 2p35_A 96 ADLLYANAVFQWV 108 (259)
T ss_dssp EEEEEEESCGGGS
T ss_pred cCEEEEeCchhhC
Confidence 8999886654433
No 281
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=90.66 E-value=0.53 Score=46.39 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=50.0
Q ss_pred CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+-||.|++...+. +.|. .++++|+++......+......+. ....+..+|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 356799999999999998887 6676 478899999988777765543221 12224456665442 4
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 129 ~fD~v~~~~ 137 (287)
T 1kpg_A 129 PVDRIVSIG 137 (287)
T ss_dssp CCSEEEEES
T ss_pred CeeEEEEeC
Confidence 688887553
No 282
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=90.64 E-value=0.29 Score=47.09 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=36.5
Q ss_pred ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 006172 520 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 566 (658)
Q Consensus 520 ~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k 566 (658)
+.++.+.+|||+-||.|.+...|.+.|.+ ++++|+++......+
T Consensus 37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~ 80 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE 80 (240)
T ss_dssp GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence 34456789999999999999999999875 588999998776654
No 283
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.46 Score=47.40 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+-||.|.+...|.+. +. ..++++|+++......+...... ......++.+|+.++....-.. ...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS--VDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT--TTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc--ccC
Confidence 5689999999999999998852 22 35789999999887777654332 1223345678887765221000 012
Q ss_pred CCccEEEecCC
Q 006172 600 GSIDFVICQNS 610 (658)
Q Consensus 600 g~~DLVIGGpP 610 (658)
+.||+|+....
T Consensus 112 ~~fD~V~~~~~ 122 (299)
T 3g5t_A 112 QKIDMITAVEC 122 (299)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEeHhhH
Confidence 57999987653
No 284
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=90.58 E-value=0.28 Score=47.98 Aligned_cols=39 Identities=26% Similarity=0.224 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
..+++++.|+.|||+++.|..|+.+++-| ++.-++.|+.
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~ 200 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS 200 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 36889999999999999999999999775 5677787775
No 285
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=90.56 E-value=0.47 Score=47.70 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=38.8
Q ss_pred cccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHH
Q 006172 515 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW 568 (658)
Q Consensus 515 lsvLK~~f~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~ 568 (658)
++.|......+.+|||+-||.|.+.+.+.+. +. .++++|+++......+.+
T Consensus 37 l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~ 89 (292)
T 3g07_A 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN 89 (292)
T ss_dssp GGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred HHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence 4445444345689999999999999998876 43 478999999987776654
No 286
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.41 E-value=0.28 Score=40.69 Aligned_cols=43 Identities=16% Similarity=-0.006 Sum_probs=35.1
Q ss_pred chhHHHHHHHHhcCCChHHH-HHHHHHhCCCCchHHHHHHHHHHhh
Q 006172 96 GLHIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI 140 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev-~~Ai~~~G~d~~i~~L~d~I~a~q~ 140 (658)
..+...+.+|+.|||...+. .+|+..++-+ |+.-||.|+..+.
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~ 60 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG 60 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence 44677999999999976655 9999998855 6899999998743
No 287
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=90.38 E-value=0.43 Score=47.83 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCCCcccccCCCCChHHHHHHHcC-CceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aG-i~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+.+||||=||.|.+.+.|.+.. .+---+++||+++......+......+.. ...++.+|+.++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---------- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---------- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence 3567899999999999999887642 11113689999998877766654433221 22245678876642
Q ss_pred CCccEEEecC
Q 006172 600 GSIDFVICQN 609 (658)
Q Consensus 600 g~~DLVIGGp 609 (658)
+++|+|+...
T Consensus 138 ~~~d~v~~~~ 147 (261)
T 4gek_A 138 ENASMVVLNF 147 (261)
T ss_dssp CSEEEEEEES
T ss_pred cccccceeee
Confidence 4688888654
No 288
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=90.23 E-value=0.03 Score=55.08 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+.||.|++...+.+.|. -++++|+++......+.... ......++.+|+.++... ..+.|
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f- 95 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY- 95 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence 457899999999999999988884 47899999987554433221 111223556777765421 01356
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|++-+|...
T Consensus 96 ~vv~n~Py~~ 105 (245)
T 1yub_A 96 KIVGNIPYHL 105 (245)
T ss_dssp EEEEECCSSS
T ss_pred EEEEeCCccc
Confidence 7888887654
No 289
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=90.21 E-value=0.25 Score=48.12 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=53.1
Q ss_pred CCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.+|||+-||.|..++.|-++ +-. ..++++|+++...+..+.++...+.. ...++.+|..++-. .+ ..+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence 358999999999999988764 211 24789999999998888888654322 12234455443211 11 1267
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+-..+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999987655443
No 290
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=89.99 E-value=0.33 Score=48.29 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
..+.+|||+-||.|.+...|.+. |. .++++|+++......+......+ ....+..+|+.++.. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~ 87 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N 87 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence 35689999999999999988776 44 36889999998887776543321 123356678776542 1
Q ss_pred CCccEEEecCC
Q 006172 600 GSIDFVICQNS 610 (658)
Q Consensus 600 g~~DLVIGGpP 610 (658)
+.||+|+....
T Consensus 88 ~~fD~v~~~~~ 98 (284)
T 3gu3_A 88 DKYDIAICHAF 98 (284)
T ss_dssp SCEEEEEEESC
T ss_pred CCeeEEEECCh
Confidence 47999987653
No 291
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=89.85 E-value=0.55 Score=48.31 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+++.+.++|. .-++++|+++ .....+......+... ..++.+|+.++.. ..+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 106 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKV 106 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCE
T ss_pred CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCcc
Confidence 346899999999999999999986 3578999995 4444454433322211 2345677776531 12479
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+...+
T Consensus 107 D~Ivs~~~ 114 (328)
T 1g6q_1 107 DIIISEWM 114 (328)
T ss_dssp EEEEECCC
T ss_pred cEEEEeCc
Confidence 99997654
No 292
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=89.50 E-value=0.45 Score=52.20 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=50.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+-||.|.+.+.+.+.|. .-|+++|+++ .....+......+. ....++.+|+.++.. .+.|
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence 457899999999999999988875 3578999998 44444444333221 123355677766531 1479
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99997554
No 293
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=89.44 E-value=0.43 Score=48.69 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCc-eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~-~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+-+|||+=||.|.++..|.+.|-+ -..++++|+|+.....++..+ . ....++.+|+.++.-..+.. ......
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---~~v~~i~~D~~~~~~~~~~~--~~~~~~ 115 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---ELLELHAGDALTFDFGSIAR--PGDEPS 115 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---GGEEEEESCGGGCCGGGGSC--SSSSCC
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---CCcEEEECChhcCChhHhcc--cccCCc
Confidence 4578999999999999999887642 011689999999988887753 1 12336789998887544310 000134
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
..|||-.|
T Consensus 116 ~~vv~NlP 123 (279)
T 3uzu_A 116 LRIIGNLP 123 (279)
T ss_dssp EEEEEECC
T ss_pred eEEEEccC
Confidence 56777776
No 294
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=89.28 E-value=0.29 Score=50.28 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+||+|.||.|++...+.+.+ +...+.+||+|+...+..+.++... +.....++.+|..+. +. ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence 455789999999999999887764 2345789999999998888876431 112223445565431 11 12
Q ss_pred cCCccEEEecCCC
Q 006172 599 LGSIDFVICQNSV 611 (658)
Q Consensus 599 ~g~~DLVIGGpPC 611 (658)
.+.||+|+..+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 3579999987664
No 295
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=89.14 E-value=0.6 Score=47.75 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=53.2
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK 591 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~------n~-----~g~l~~~~DI~~Lt~~~ 591 (658)
.+.+|||+.||.|.+...+.++ |-. ..++++|+++.+....+.+.... |+ ....+..+|+.++.. .
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~ 182 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D 182 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence 4578999999999999998886 532 24789999999888777765431 11 122345677765531 1
Q ss_pred HHHhhhccCCccEEEecCCCC
Q 006172 592 FESLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGGpPCQ 612 (658)
+. .+.||+|+...|+.
T Consensus 183 ~~-----~~~fD~V~~~~~~~ 198 (336)
T 2b25_A 183 IK-----SLTFDAVALDMLNP 198 (336)
T ss_dssp ----------EEEEEECSSST
T ss_pred cC-----CCCeeEEEECCCCH
Confidence 11 14699999776654
No 296
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=89.01 E-value=0.5 Score=43.53 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=46.3
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCc-------eeeEEEeeCCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF 592 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~-------~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~-~~DI~~Lt~~-~I 592 (658)
+.+.+||||-||.|++...+.+. |-. -..++++|+++.+ ......++ .+|+.+.... .+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence 34679999999999999988776 421 0147899999842 01122345 6677654321 11
Q ss_pred HHhhhccCCccEEEecCCC
Q 006172 593 ESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 593 e~l~~~~g~~DLVIGGpPC 611 (658)
.... ..+.||+|+...++
T Consensus 90 ~~~~-~~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 90 LEVL-PGRRADVILSDMAP 107 (196)
T ss_dssp HHHS-GGGCEEEEEECCCC
T ss_pred HHhc-CCCCCcEEEeCCCC
Confidence 1111 11479999976543
No 297
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=88.93 E-value=0.17 Score=50.76 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=51.8
Q ss_pred ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006172 518 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 518 LK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
|..+.+.+-+||||=||.|-+...|...|.+ |++||+++...+..+ .+++..++.+|+.++.-
T Consensus 33 l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~-------- 95 (257)
T 4hg2_A 33 LGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL-------- 95 (257)
T ss_dssp HHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC--------
T ss_pred HHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc--------
Confidence 4444566678999999999999999999864 689999998654322 12333455667665542
Q ss_pred ccCCccEEEec
Q 006172 598 KLGSIDFVICQ 608 (658)
Q Consensus 598 ~~g~~DLVIGG 608 (658)
.-+.||+|+.+
T Consensus 96 ~~~sfD~v~~~ 106 (257)
T 4hg2_A 96 PPASVDVAIAA 106 (257)
T ss_dssp CSSCEEEEEEC
T ss_pred cCCcccEEEEe
Confidence 12579999874
No 298
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=88.91 E-value=0.57 Score=50.10 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
+-+|||+=||.|-+++-..++|-. -|++||.++.+..+ +..-..++... ..++.+|+.++.. ...+|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D 151 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQA-REVVRFNGLEDRVHVLPGPVETVEL---------PEQVD 151 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHH-HHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHHH-HHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence 347999999999999999999974 58899999754322 22222222211 2245677776642 24799
Q ss_pred EEEe
Q 006172 604 FVIC 607 (658)
Q Consensus 604 LVIG 607 (658)
+||.
T Consensus 152 vivs 155 (376)
T 4hc4_A 152 AIVS 155 (376)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 299
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=88.66 E-value=1.4 Score=46.93 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=57.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~-l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+.||.||=+..+-.++-. ..++|+|+++.-.+.++.+-........ ....-.|...+...+... ..+.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~--~~~~f 224 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL--EGDTY 224 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH--STTCE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh--ccccC
Confidence 4678999999999999988887753 4688999999988877765543211100 000112333333333221 23579
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|.|+-=+||.+-
T Consensus 225 D~VLlDaPCSg~ 236 (359)
T 4fzv_A 225 DRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEECCCCCH
T ss_pred CEEEECCccCCC
Confidence 999999999873
No 300
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=88.49 E-value=0.45 Score=48.13 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=53.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+||+|-||.|++...+.+.. +..-+.+||+|+...+..+.++...+ .+...++.+|+.+. +. ..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence 456789999999999998887663 23457899999999988887764321 11222445555432 11 11
Q ss_pred cCCccEEEecCCC
Q 006172 599 LGSIDFVICQNSV 611 (658)
Q Consensus 599 ~g~~DLVIGGpPC 611 (658)
.+.+|+|+..++.
T Consensus 149 ~~~fD~Ii~d~~~ 161 (283)
T 2i7c_A 149 TNTYDVIIVDSSD 161 (283)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEEcCCC
Confidence 3579999986543
No 301
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=88.44 E-value=0.85 Score=44.90 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+.+|||+=||.|.+...+...|. .++++|+++......+..+ +...+..+|+.++.. .+.||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence 457899999999999999988775 4789999999877766543 223356777776542 14689
Q ss_pred EEEecCCC
Q 006172 604 FVICQNSV 611 (658)
Q Consensus 604 LVIGGpPC 611 (658)
+|+....-
T Consensus 120 ~v~~~~~l 127 (279)
T 3ccf_A 120 AVFSNAML 127 (279)
T ss_dssp EEEEESCG
T ss_pred EEEEcchh
Confidence 88876543
No 302
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=88.44 E-value=0.74 Score=44.44 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=37.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 572 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~ 572 (658)
.+.+|||+-||.|.....+.+..-+-..++++|+++......+.++...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 3568999999999999988876210124789999999988888776543
No 303
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=88.35 E-value=0.82 Score=45.24 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+-||.|.+...|.+. |.+ ++++|+++......+......+.. ...++.+|+.++.. ..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCE---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence 45679999999999999988876 763 688999999877766554332211 12345667766531 114
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 150 ~fD~v~~~~ 158 (297)
T 2o57_A 150 SYDFIWSQD 158 (297)
T ss_dssp CEEEEEEES
T ss_pred CEeEEEecc
Confidence 678777543
No 304
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=88.01 E-value=0.69 Score=41.69 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=33.0
Q ss_pred hHHHHHHHHhcCCCh-HHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 98 ~~~~~~~lv~MGF~e-eev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
..+++..|+.|||+. +.+.+|+.+++-+ ++.-||+|+..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~ 105 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG 105 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence 567899999999965 7999999998855 68889999864
No 305
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=87.93 E-value=0.48 Score=37.93 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=32.4
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
--|..|++|||+.+-|.+|+.--. +|.+.--++||.+-.
T Consensus 9 ~~Ia~L~smGfsr~da~~AL~ia~-Ndv~~AtNiLlEf~~ 47 (56)
T 2juj_A 9 SEIENLMSQGYSYQDIQKALVIAQ-NNIEMAKNILREFVS 47 (56)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-TCSHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc-ccHHHHHHHHHHHHc
Confidence 367999999999999999998755 488888888887654
No 306
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=87.84 E-value=0.88 Score=36.89 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~---G~d~~i~~L~d~I~ 136 (658)
..+.+..|+.+||++.|+.+|+.++ .++.++++++-.-|
T Consensus 17 ~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL 58 (62)
T 1ixs_A 17 AEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL 58 (62)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 5678999999999999999999997 44556677665443
No 307
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=87.78 E-value=1.4 Score=42.87 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=53.5
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
.+.+|||+-||.|.+...+.+. |. .++++|+++......+......+.. ...+..+|+.++.. ..+.
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 129 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS 129 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence 4679999999999999888764 54 4788999999887777655433221 12345677766531 1247
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+....-.-
T Consensus 130 fD~v~~~~~l~~ 141 (273)
T 3bus_A 130 FDAVWALESLHH 141 (273)
T ss_dssp EEEEEEESCTTT
T ss_pred ccEEEEechhhh
Confidence 999987654443
No 308
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=87.72 E-value=0.73 Score=44.93 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=49.1
Q ss_pred CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+-||.|.+...+.+. |. .++++|+++...+..+... ....+...|+.++.. ..+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence 35678999999999999888886 54 3788999999877766532 122345667665531 114
Q ss_pred CccEEEecC
Q 006172 601 SIDFVICQN 609 (658)
Q Consensus 601 ~~DLVIGGp 609 (658)
.||+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 688887543
No 309
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=87.71 E-value=1.1 Score=44.03 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC----CCCccccccccccChhhHHHhhhcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ----TGELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~----~g~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
.+.+|||+-||.|.+...|...|.+ ++++|+++......+........ ....+..+|+.++..+ + ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence 4578999999999999999999973 68999999988776653211111 0111234555443211 0 122
Q ss_pred CCccEEEe
Q 006172 600 GSIDFVIC 607 (658)
Q Consensus 600 g~~DLVIG 607 (658)
+.||+|+.
T Consensus 129 ~~fD~V~~ 136 (293)
T 3thr_A 129 DGFDAVIC 136 (293)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 67999986
No 310
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=87.66 E-value=0.48 Score=48.68 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=54.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n-----~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
+.+.+||+|-||.|++...+.+.. +..-+.+||+|+...+..+.++...+ .+...++.+|+.+. +. .
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LE---R 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HH---H
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HH---h
Confidence 455789999999999998887752 22457899999999888887764311 12223455666532 11 1
Q ss_pred ccCCccEEEecCCC
Q 006172 598 KLGSIDFVICQNSV 611 (658)
Q Consensus 598 ~~g~~DLVIGGpPC 611 (658)
..+.+|+|+..+|.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 23579999987664
No 311
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=87.60 E-value=0.5 Score=48.29 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+||++-||.|++...+.+.. ....+++||+|+...+..+.++... ......++.+|+.++... ..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~------~~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ------TP 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS------SC
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh------cc
Confidence 456799999999999999888763 2345789999999988888765311 111222445565432110 01
Q ss_pred cCCccEEEecCCC
Q 006172 599 LGSIDFVICQNSV 611 (658)
Q Consensus 599 ~g~~DLVIGGpPC 611 (658)
.+.||+|+...|.
T Consensus 167 ~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 167 DNTYDVVIIDTTD 179 (304)
T ss_dssp TTCEEEEEEECC-
T ss_pred CCceeEEEECCCC
Confidence 3579999986543
No 312
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=87.55 E-value=0.22 Score=51.65 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=57.7
Q ss_pred hhhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006172 511 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK 590 (658)
Q Consensus 511 i~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~ 590 (658)
+...|++++.+ ++-.+||||+|.|.+.+-+-+ |. .-++.||.++.+.++++.+.... ....++..|...
T Consensus 80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~---- 148 (283)
T 2oo3_A 80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS---- 148 (283)
T ss_dssp GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence 45566777763 456799999999998766666 33 45788999999999998765321 112233444321
Q ss_pred hHHHhhhccCCccEEEecCCC
Q 006172 591 KFESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 591 ~Ie~l~~~~g~~DLVIGGpPC 611 (658)
-+..+......+|||.-=||=
T Consensus 149 ~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 149 KLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp HHHHHCSCTTSCEEEEECCCC
T ss_pred HHHHhcCCCCCccEEEECCCC
Confidence 122222222369999998884
No 313
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=87.39 E-value=0.5 Score=48.91 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=52.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+|||+-||.|++...+.+.. +...+.+||+|+.+.+..+.++... +.+...++.+|+.+. +. ..
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence 355789999999999998887762 1245789999999998888765431 011222345555431 11 11
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
.+.||+|+..++
T Consensus 187 ~~~fDvIi~d~~ 198 (321)
T 2pt6_A 187 TNTYDVIIVDSS 198 (321)
T ss_dssp CSCEEEEEEECC
T ss_pred CCCceEEEECCc
Confidence 357999998664
No 314
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=87.34 E-value=0.9 Score=42.06 Aligned_cols=55 Identities=9% Similarity=-0.060 Sum_probs=36.9
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 588 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt 588 (658)
+.+.+||||=||.|+++..+.+. +-.-..++++|+++.+ ...+..++.+|+.++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~ 76 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDN 76 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchh
Confidence 45678999999999999988764 2001247899999842 1123335567777654
No 315
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=87.29 E-value=0.67 Score=45.53 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~------~n~~g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
.+.+|||+=||.|.+.+.|.+..=. ..+++||+++......+..... .+.....++.+|+.+. +....
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~- 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF- 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence 4578999999999999988776311 2578999999876655433211 1112223456777542 11111
Q ss_pred ccCCccEEEecCCCCCc
Q 006172 598 KLGSIDFVICQNSVPQI 614 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ~F 614 (658)
..+.+|+|+-.+|..-+
T Consensus 120 ~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp CTTCEEEEEEESCC---
T ss_pred CCcCeeEEEEeCCCchh
Confidence 23579999877765443
No 316
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=87.27 E-value=1.6 Score=51.43 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCccc--ccchhhhHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITL 175 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~--~~~~m~k~~ 175 (658)
..+.+..|+.||||+.-..+|+..-|..+. +.-++.|+++..-...+. + ... ........... .-..-+.+.
T Consensus 652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~-e~a~~wl~~hmdd~di~~--p--~~~-~~~~~~~s~~~~~~~~~~e~i~ 725 (854)
T 3ihp_A 652 DESVIIQLVEMGFPMDACRKAVYYTGNSGA-EAAMNWVMSHMDDPDFAN--P--LIL-PGSSGPGSTSAAADPPPEDCVT 725 (854)
T ss_dssp -CHHHHHHHHHTCCHHHHHHHHHHTTSCCH-HHHHHHHHHHTTSCGGGS--C--CCC-C--------------CCHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHhhcCCCch-HHHhHHHhhccCcccccc--c--ccc-cccccccccccccCCCCHHHHH
Confidence 346789999999999999999999988765 788888887632211110 0 000 00000000000 001235677
Q ss_pred HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006172 176 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS 209 (658)
Q Consensus 176 ~L~~MGf~e~Eas~AI~rcG~da~i~eL~D~I~A 209 (658)
.|..|||+.+.|..|+..++- .++.-+|.|+.
T Consensus 726 ~l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs 757 (854)
T 3ihp_A 726 TIVSMGFSRDQALKALRATNN--SLERAVDWIFS 757 (854)
T ss_dssp HHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence 899999999999999999975 57777787776
No 317
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=87.15 E-value=1 Score=43.96 Aligned_cols=83 Identities=14% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 598 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~- 598 (658)
.+-+|||+-||.|+..+.+.++ +. .++++|+++......+.+|...+... ..++.+|..++ ++.+...
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 142 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ 142 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence 3468999999999999888775 43 47899999999998888886543211 12344555432 1222111
Q ss_pred --cCCccEEEecCCCCC
Q 006172 599 --LGSIDFVICQNSVPQ 613 (658)
Q Consensus 599 --~g~~DLVIGGpPCQ~ 613 (658)
.+.||+|+-..+|..
T Consensus 143 ~~~~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 143 ESEGSYDFGFVDADKPN 159 (237)
T ss_dssp TCTTCEEEEEECSCGGG
T ss_pred CCCCCcCEEEECCchHH
Confidence 357999997766653
No 318
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=86.84 E-value=1.4 Score=39.61 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
..+.+|||+-||.|.+...+.+.+. .++++|+++......+.. .....+..+| ..+ ..+.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~----------~~~~~ 76 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK-----FDSVITLSDP-KEI----------PDNSV 76 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGS----------CTTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCC----------CCCce
Confidence 3567899999999999999999883 578999999988777654 1122234444 111 12579
Q ss_pred cEEEecCC
Q 006172 603 DFVICQNS 610 (658)
Q Consensus 603 DLVIGGpP 610 (658)
|+|+....
T Consensus 77 D~v~~~~~ 84 (170)
T 3i9f_A 77 DFILFANS 84 (170)
T ss_dssp EEEEEESC
T ss_pred EEEEEccc
Confidence 99986543
No 319
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=86.81 E-value=0.72 Score=35.65 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=30.8
Q ss_pred hhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
-|..+++|||+.+-|.||+.--.- |.+.--+.|+.+-
T Consensus 7 ~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 7 EIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 468899999999999999987654 8888778887754
No 320
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=86.46 E-value=1.1 Score=42.17 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+|||+-||.|.....+.++ |. .++++|+++...+..+.++...+... ..++.+|..++ +. ...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~ 126 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD 126 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence 468999999999999998876 43 47899999999888887765432111 11334444321 11 1124
Q ss_pred CccEEEecCCCCC
Q 006172 601 SIDFVICQNSVPQ 613 (658)
Q Consensus 601 ~~DLVIGGpPCQ~ 613 (658)
||+|+...++..
T Consensus 127 -fD~v~~~~~~~~ 138 (210)
T 3c3p_A 127 -IDILFMDCDVFN 138 (210)
T ss_dssp -EEEEEEETTTSC
T ss_pred -CCEEEEcCChhh
Confidence 999987766543
No 321
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=86.40 E-value=0.67 Score=47.98 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=53.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n----~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+||+|-||.|++...+.+.. +...+.+||+|+...+..+.++...+ .....++.+|+.+. +. ..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence 355789999999999998887762 23457899999999988888764321 11222345555431 11 12
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
.+.||+|+..+|
T Consensus 179 ~~~fD~Ii~d~~ 190 (314)
T 2b2c_A 179 KNEFDVIITDSS 190 (314)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCceEEEEcCC
Confidence 357999997664
No 322
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.30 E-value=0.59 Score=38.78 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=31.7
Q ss_pred hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006172 15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIEYN 52 (658)
Q Consensus 15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLty~ 52 (658)
-+.++..|||. ...+.+||+..+. |++.-+|+|+...
T Consensus 22 ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~ 59 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQ 59 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 56899999995 5577999999985 9999999999843
No 323
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=86.27 E-value=0.97 Score=45.33 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=55.5
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID 603 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D 603 (658)
.+-+|||+=||.|.++. +.+.+ + .-++++|+|+.....++...... ....++.+|+.++.-..+. ...+..+
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~~~~~ 92 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELA---EKMGQPL 92 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhh---cccCCce
Confidence 45689999999999999 87632 2 12789999999988877643211 1234678999888754331 0013468
Q ss_pred EEEecCCCCC
Q 006172 604 FVICQNSVPQ 613 (658)
Q Consensus 604 LVIGGpPCQ~ 613 (658)
+|+|..|=+-
T Consensus 93 ~vvsNlPY~i 102 (252)
T 1qyr_A 93 RVFGNLPYNI 102 (252)
T ss_dssp EEEEECCTTT
T ss_pred EEEECCCCCc
Confidence 9999998543
No 324
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=86.04 E-value=1.9 Score=44.10 Aligned_cols=47 Identities=9% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
|.+.+||||=||.|+....+...|. .-|+++|+++.+.+.-+..+..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~ 93 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK 93 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence 5678999999999987666666664 2478999999998887776543
No 325
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.91 E-value=1.1 Score=35.87 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred hHHHHHHHHhcCC-ChHHHHHHHHHhCCCCchHHHHHHHHHH
Q 006172 98 HIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA 138 (658)
Q Consensus 98 ~~~~~~~lv~MGF-~eeev~~Ai~~~G~d~~i~~L~d~I~a~ 138 (658)
+..++..|..||| .++.-..|+.++|-+ ++..|+.|+..
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gn--v~~aI~~Ll~~ 48 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYN--ILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTC--HHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhc
Confidence 5568999999999 788888899988765 67888888875
No 326
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=85.86 E-value=1.2 Score=43.16 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS 601 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~--g~ 601 (658)
+.+|||+-||.|...+.+.++--+-..++++|+++...+..+.++...+... ..++.+|+.+. +..+.... +.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~ 148 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE 148 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence 4589999999999999888751100247899999999888888775443211 12334454321 22221111 67
Q ss_pred ccEEEecCCCC
Q 006172 602 IDFVICQNSVP 612 (658)
Q Consensus 602 ~DLVIGGpPCQ 612 (658)
||+|+-..++.
T Consensus 149 fD~V~~d~~~~ 159 (232)
T 3cbg_A 149 FDLIFIDADKR 159 (232)
T ss_dssp EEEEEECSCGG
T ss_pred cCEEEECCCHH
Confidence 99998766543
No 327
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=85.78 E-value=0.4 Score=46.95 Aligned_cols=73 Identities=23% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+=||.|.+...|.+.|.+ ++++|+++......+. .....++.+|+.++.. ..+.|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLF---VYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCE---EEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCE---EEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence 35689999999999999999988864 6899999976433211 1123355677766542 12579
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|+|+......
T Consensus 96 D~v~~~~~l~ 105 (261)
T 3ege_A 96 DGVISILAIH 105 (261)
T ss_dssp SEEEEESCGG
T ss_pred eEEEEcchHh
Confidence 9999766543
No 328
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=85.42 E-value=0.79 Score=45.23 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=55.2
Q ss_pred CCCcccccCCCCChHHHHHHHc---CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK- 598 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a---Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~- 598 (658)
.+-+|||+-||.|...+.|.++ |. .++++|+++......+.+|...+... ..++.+|..++ +..+...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence 3468999999999999988775 43 47899999999888888876543211 12344554432 1212111
Q ss_pred --cCCccEEEecCCCCC
Q 006172 599 --LGSIDFVICQNSVPQ 613 (658)
Q Consensus 599 --~g~~DLVIGGpPCQ~ 613 (658)
.+.||+|+-..++..
T Consensus 152 ~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGTTCBSEEEECSCSTT
T ss_pred CCCCCEEEEEEcCchHH
Confidence 367999998776654
No 329
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=85.26 E-value=0.63 Score=43.93 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=31.7
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 564 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t 564 (658)
.+.+|||+-||.|.+...|.+.+-. .-++++|+++.....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~ 66 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEK 66 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHH
Confidence 5678999999999999999887311 347899999985543
No 330
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=85.22 E-value=2.8 Score=41.35 Aligned_cols=128 Identities=9% Similarity=0.096 Sum_probs=76.6
Q ss_pred hhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhc-cCCCCCCCccCcccCCCCCCCCCCccCCCCCCCC
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQ-ESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEE 89 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~-~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e 89 (658)
-|+..|...||+++.|+.||... |==|-....+..+....-. .-|
T Consensus 80 EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G------------------------------- 128 (221)
T 3d5l_A 80 DIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKG------------------------------- 128 (221)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCC-------------------------------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccc-------------------------------
Confidence 37888888899999888888755 4446667777777655431 110
Q ss_pred CCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccc
Q 006172 90 PNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYG 169 (658)
Q Consensus 90 ~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~ 169 (658)
.-.....|..-|++.+.|..|++++-++.. .+++.-++.-... ... . .+...
T Consensus 129 --------~~~I~~eL~~KGI~~~~I~~al~~~~~~~e-~e~a~~l~~Kk~~-~~~---~---------------~~~~~ 180 (221)
T 3d5l_A 129 --------PGIIRQHLRQKGIGESDIDDALTQFTPEVQ-AELAKKLALKLFR-RYR---N---------------QPERR 180 (221)
T ss_dssp --------HHHHHHHHHHTTCCHHHHHHHGGGCCHHHH-HHHHHHHHHHHHH-HTT---T---------------SCHHH
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHhCCHHHH-HHHHHHHHHHHHh-hcc---C---------------CChHH
Confidence 334567899999999999999998733221 1122222221111 100 0 00122
Q ss_pred hhhhHH-HHHhcCCCHHHHHHHHHhhCCCCCh
Q 006172 170 TMEITL-QLLEMGFSENQVSLAIEKFGSKTPI 200 (658)
Q Consensus 170 ~m~k~~-~L~~MGf~e~Eas~AI~rcG~da~i 200 (658)
...|+. +|..=||+-+.+..|+..+..+...
T Consensus 181 ~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~~~ 212 (221)
T 3d5l_A 181 REQKVQQGLTTKGFSSSVYEMIKDEVVPQPDL 212 (221)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTC-------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhccchhhh
Confidence 345665 9999999999999998877555433
No 331
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=85.00 E-value=0.76 Score=44.17 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
.+.+|||+-||.|.+...+.+.|. ..++++|+++.+....+.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999988888886 357899999999888877654
No 332
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=84.84 E-value=2 Score=43.00 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=78.7
Q ss_pred hhhhhhhccCCCCHHHHHHHHHH----hCCC---CHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCC
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEE----KGQD---NVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQ 85 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe----~Ge~---d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~ 85 (658)
|.+++.|.+||++...|.|...- .+-+ +....+++|. .+|=+... .+... ..+ |.
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~---~lG~~~~~----i~~il----~~~-P~------ 67 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK---DVGIEDNQ----LGAFL----TKN-HA------ 67 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH---HHTCCGGG----HHHHH----HHC-TT------
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHH---HcCCCHHH----HHHHH----HhC-Ch------
Confidence 56889999999999999888777 5654 3445566663 34422211 00000 000 01
Q ss_pred CCCCCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCC--CCc---hHHHHHHHH-HHhhhcc--------cccCCCCC
Q 006172 86 PKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGK--DAP---VYELVDFIT-AAQISEN--------FEKETDDA 151 (658)
Q Consensus 86 ~~~e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~--d~~---i~~L~d~I~-a~q~a~~--------~~~e~~D~ 151 (658)
....+......++..|...|++.++|.+++.+|-. ..+ +..-++++- .....++ .+.--.
T Consensus 68 ----lL~~~~e~l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-- 141 (270)
T 3m66_A 68 ----IFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-- 141 (270)
T ss_dssp ----GGGSCHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT--
T ss_pred ----hhhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee--
Confidence 10101111445778899999999999999988643 112 333344442 1111110 010000
Q ss_pred CCCCCCCCCCCCcccccchhhhHHHH-HhcCCCHHHHHHHHHhh
Q 006172 152 PHDNDGTNEDKSDETLYGTMEITLQL-LEMGFSENQVSLAIEKF 194 (658)
Q Consensus 152 ~~~~d~~~ed~~~e~~~~~m~k~~~L-~~MGf~e~Eas~AI~rc 194 (658)
.+.+ ....|+..| .+|||+++|+..++.+|
T Consensus 142 ----------~s~e---~~~~~v~~l~~~~G~s~~ei~~~v~~~ 172 (270)
T 3m66_A 142 ----------GSLE---PVKENMKVYRLELGFKHNEIQHMITRI 172 (270)
T ss_dssp ----------SCSH---HHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred ----------echH---HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 0000 012444544 59999999999999887
No 333
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=84.55 E-value=12 Score=35.04 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=73.9
Q ss_pred hhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 15 LRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 15 l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
|+..|...||+++.|..||... |==|-....+..+....- + +
T Consensus 37 L~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~-~--------------------------------- 81 (162)
T 3dfg_A 37 LNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-S-G--------------------------------- 81 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-T-T---------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-c-c---------------------------------
Confidence 7777888888888888887766 444555555655554332 0 0
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCcccccchh
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM 171 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~~~m 171 (658)
-+ .-.....|..-|++.+.|..|++++.++ - .+++--++.-+..... .. + ....
T Consensus 82 ---~G-~~~I~~eL~~KGI~~~~I~~al~~~~~d-e-~e~a~~l~~Kk~~~~~---~~-----------~------~~~k 135 (162)
T 3dfg_A 82 ---YG-PLHIRAELGTHGLDSDAVSAAMATFEGD-W-TENALDLIRRRFGEDG---PV-----------D------LAQR 135 (162)
T ss_dssp ---CC-HHHHHHHHHHTTCCHHHHHHHHTTCCSC-H-HHHHHHHHHHHHCTTC---CC-----------S------HHHH
T ss_pred ---cc-HHHHHHHHHHcCCCHHHHHHHHHhCcHh-H-HHHHHHHHHHhcCCCC---CC-----------C------HHHH
Confidence 00 3346688999999999999999998532 2 2333333322221100 00 0 1234
Q ss_pred hhHH-HHHhcCCCHHHHHHHHHh
Q 006172 172 EITL-QLLEMGFSENQVSLAIEK 193 (658)
Q Consensus 172 ~k~~-~L~~MGf~e~Eas~AI~r 193 (658)
.|+. +|+.=||+.+.+..||..
T Consensus 136 ~K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 136 RKAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCHHHHHHHHhc
Confidence 5665 999999999999988764
No 334
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=84.52 E-value=0.67 Score=48.44 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++... +.....++.+|+.+. +..+ .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence 455789999999999999888762 2245789999999998888776431 111223455665432 1110 1
Q ss_pred cCCccEEEecCC
Q 006172 599 LGSIDFVICQNS 610 (658)
Q Consensus 599 ~g~~DLVIGGpP 610 (658)
.+.||+|+.-++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 257999997543
No 335
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=84.31 E-value=1.7 Score=47.63 Aligned_cols=81 Identities=10% Similarity=0.127 Sum_probs=53.0
Q ss_pred CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeeCCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKF 592 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~-~aGi~~k~vvavEid~~a~~t~k~~~-------~~~n--~~g~l~~~~DI~~Lt~~~I 592 (658)
..+-+||||=||.|.+.+.+. ..|. .-+++||+++.+..+-+.+. ...+ .....++.+|+.++....
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d- 248 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE- 248 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc-
Confidence 356789999999999998775 4565 34789999987665544321 1111 122335678988764321
Q ss_pred HHhhhccCCccEEEecCCC
Q 006172 593 ESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 593 e~l~~~~g~~DLVIGGpPC 611 (658)
.++.+|+|+..++|
T Consensus 249 -----~~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 -----RIANTSVIFVNNFA 262 (438)
T ss_dssp -----HHHTCSEEEECCTT
T ss_pred -----ccCCccEEEEcccc
Confidence 12468999987776
No 336
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=84.20 E-value=0.68 Score=48.49 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=52.3
Q ss_pred CCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+.++||+|=||.|++...+.+. +.+ +..||||+...+..+.|+.........++.+|..++- ..+ ..+.
T Consensus 89 ~~~rVLdIG~G~G~la~~la~~~p~~~---v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~ 159 (317)
T 3gjy_A 89 SKLRITHLGGGACTMARYFADVYPQSR---NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPAS 159 (317)
T ss_dssp GGCEEEEESCGGGHHHHHHHHHSTTCE---EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTC
T ss_pred CCCEEEEEECCcCHHHHHHHHHCCCcE---EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCC
Confidence 3569999999999999888873 543 5789999999988888764321222334566665331 110 1257
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+||...+
T Consensus 160 fDvIi~D~~ 168 (317)
T 3gjy_A 160 RDVIIRDVF 168 (317)
T ss_dssp EEEEEECCS
T ss_pred CCEEEECCC
Confidence 999997543
No 337
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=83.86 E-value=1.1 Score=40.48 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.4
Q ss_pred hhhhhccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHH
Q 006172 15 LRSSFIGMGFS-PSLVDKVIEEKGQDNVDLLLETLIE 50 (658)
Q Consensus 15 l~~~fi~MGF~-~e~V~KAIqe~Ge~d~d~iLE~LLt 50 (658)
-+..+.+|||. ++.+.+||+..+. |++.-||+|+.
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~ 104 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA 104 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 56999999995 5799999999995 99999999996
No 338
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=83.63 E-value=0.44 Score=46.90 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhc--cCC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHK--LGS 601 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~--~g~ 601 (658)
+-+|||+-||.|..++.|.++-=+-..++++|+++......+.++...+.. ...++.+|..++- ..+... .+.
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~ 136 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ 136 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence 468999999999999998874100124789999998766666666544322 1224456654332 111111 368
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
||+|+-..++..
T Consensus 137 fD~V~~d~~~~~ 148 (242)
T 3r3h_A 137 FDFIFIDADKTN 148 (242)
T ss_dssp EEEEEEESCGGG
T ss_pred EeEEEEcCChHH
Confidence 999987766443
No 339
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=83.20 E-value=0.75 Score=43.59 Aligned_cols=70 Identities=26% Similarity=0.310 Sum_probs=47.1
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172 517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 596 (658)
Q Consensus 517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~ 596 (658)
.+..+.| +.+|||+-||.|.+...+... +++|+++...+..+.. +..+...|+.++..
T Consensus 41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~------- 98 (219)
T 1vlm_A 41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL------- 98 (219)
T ss_dssp HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence 3444445 679999999999998877554 7899999987776542 22345667665531
Q ss_pred hccCCccEEEecC
Q 006172 597 HKLGSIDFVICQN 609 (658)
Q Consensus 597 ~~~g~~DLVIGGp 609 (658)
..+.+|+|+...
T Consensus 99 -~~~~fD~v~~~~ 110 (219)
T 1vlm_A 99 -KDESFDFALMVT 110 (219)
T ss_dssp -CTTCEEEEEEES
T ss_pred -CCCCeeEEEEcc
Confidence 124688887654
No 340
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=83.01 E-value=0.73 Score=46.37 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK 598 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~----n~~g~l~~~~DI~~Lt~~~Ie~l~~~ 598 (658)
+++.+||++-||.|++...+.+.| .-+.+||+|+...+..+.++... ..+...++.+|..+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 355789999999999988777765 35789999998877666554220 1112223445554321
Q ss_pred cCCccEEEecC
Q 006172 599 LGSIDFVICQN 609 (658)
Q Consensus 599 ~g~~DLVIGGp 609 (658)
+.+|+|+...
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 4689998764
No 341
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=82.25 E-value=1.1 Score=44.47 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=40.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS 572 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~ 572 (658)
+..-+||||=||.|-+++.+....=.. .++++|||+.+..+.+.+....
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~ 96 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL 96 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence 456799999999999999998874333 6899999999999999876543
No 342
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=82.15 E-value=1.2 Score=52.72 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~ 567 (658)
.+.+||||-||.|.+...|.+.|-+..-++++|+++.+.+..+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe 764 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 56789999999999999999988222347899999998877655
No 343
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=82.00 E-value=2.5 Score=43.93 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=48.7
Q ss_pred CCCCcccccCCCCChHH-HHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 523 PGGLTMLSVFSGIGGAE-VTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGls-lGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+.+.+|||+=||.||++ +-+.+ .|. .|+++|+++.....-+.+....+.....++.+|+.++. .+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~ 187 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL 187 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence 45789999999999876 33333 465 37899999998887776654433222335567776542 25
Q ss_pred CccEEEe
Q 006172 601 SIDFVIC 607 (658)
Q Consensus 601 ~~DLVIG 607 (658)
.||+|+-
T Consensus 188 ~FDvV~~ 194 (298)
T 3fpf_A 188 EFDVLMV 194 (298)
T ss_dssp CCSEEEE
T ss_pred CcCEEEE
Confidence 7999973
No 344
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=81.78 E-value=1.7 Score=44.19 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 97 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 97 ~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
..+++++.|+.|||+++.|..|+.++|=+ ++.-++.|+.
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd--~~~A~e~L~~ 252 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWD--VETATELLLS 252 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence 46889999999999999999999999875 4677777764
No 345
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=79.70 E-value=2 Score=47.76 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCcccccCCCCChHHHHHHH-c---CC--------ceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhH
Q 006172 525 GLTMLSVFSGIGGAEVTLHR-L---GI--------KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKF 592 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~-a---Gi--------~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~I 592 (658)
+-+|+|-.||.|||-++..+ + +- .-..++++|+++...++.+.+..-++.....+..+|--......
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~- 296 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE- 296 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG-
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh-
Confidence 45899999999999766532 1 10 01247899999998877665443332221223344421111000
Q ss_pred HHhhhccCCccEEEecCCC
Q 006172 593 ESLIHKLGSIDFVICQNSV 611 (658)
Q Consensus 593 e~l~~~~g~~DLVIGGpPC 611 (658)
......||+|+|=||=
T Consensus 297 ---~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 ---MGDKDRVDVILTNPPF 312 (530)
T ss_dssp ---CCGGGCBSEEEECCCS
T ss_pred ---hcccccceEEEecCCC
Confidence 0112479999999984
No 346
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=79.51 E-value=1.5 Score=43.46 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKLGKDA 126 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~G~d~ 126 (658)
.+++..|+.|||+++.|..|+.++|-|.
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 4689999999999999999999998875
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=79.03 E-value=11 Score=35.83 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=79.3
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhcc-CCCCCCCccCcccCCCCCCCCCCccCCCCCCC
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQE-SNSQSSDSLDTLFGDKDANSPPEISTMVQPKE 88 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~-s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~ 88 (658)
.-|+..|...||+++.|..||... |==|-....+..+....-.. -|
T Consensus 36 ~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G------------------------------ 85 (177)
T 3e3v_A 36 KEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG------------------------------ 85 (177)
T ss_dssp HHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc------------------------------
Confidence 348889999999999999998765 44366677777766554321 11
Q ss_pred CCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCccccc
Q 006172 89 EPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY 168 (658)
Q Consensus 89 e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~ 168 (658)
.-.....|..-|.+.+.|..|++++.++.-. +.+.-++.-.... .. .. +..
T Consensus 86 ---------~~~I~~eL~~KGI~~~~I~~al~~~~~~de~-e~a~~l~~Kk~~~-~~---~~---------------~~~ 136 (177)
T 3e3v_A 86 ---------PKVIKLNLSKKGIDDNIAEDALILYTDKLQV-EKGVTLAEKLANR-YS---HD---------------SYR 136 (177)
T ss_dssp ---------HHHHHHHHHTTTCCHHHHHHHHTTSCHHHHH-HHHHHHHHHHHHH-TT---TS---------------CHH
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHhCCchhHH-HHHHHHHHHHHhh-cc---CC---------------ChH
Confidence 3345678999999999999999876432221 2222222221111 10 00 001
Q ss_pred chhhhHH-HHHhcCCCHHHHHHHHHhhCC
Q 006172 169 GTMEITL-QLLEMGFSENQVSLAIEKFGS 196 (658)
Q Consensus 169 ~~m~k~~-~L~~MGf~e~Eas~AI~rcG~ 196 (658)
....|+. +|+.-||+-+.+..||..+..
T Consensus 137 ~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 137 NKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 2235665 999999999999999987643
No 348
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.93 E-value=1.3 Score=39.70 Aligned_cols=38 Identities=16% Similarity=0.418 Sum_probs=31.0
Q ss_pred hhHHHHHhc-CCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006172 172 EITLQLLEM-GFSENQVSLAIEKFGSKTPISELADKIFSGQ 211 (658)
Q Consensus 172 ~k~~~L~~M-Gf~e~Eas~AI~rcG~da~i~eL~D~I~Aaq 211 (658)
+|+..|++| ||++++|..|+..|+-| +.+-+++|+-..
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~ 79 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 688899999 99999999999999988 455566666443
No 349
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=78.59 E-value=1.9 Score=45.10 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=52.4
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFES 594 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~--------n~~g~l~~~~DI~~Lt~~~Ie~ 594 (658)
.+.+||||-||.|.+...|.+. |-. ..++++|+++......+.+.... ......++.+|+.++....-
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-- 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-- 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS--
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc--
Confidence 5678999999999998888764 211 24789999999887776643211 01233356778876532100
Q ss_pred hhhccCCccEEEecCC
Q 006172 595 LIHKLGSIDFVICQNS 610 (658)
Q Consensus 595 l~~~~g~~DLVIGGpP 610 (658)
.....+.||+|+....
T Consensus 160 ~~~~~~~fD~V~~~~~ 175 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCV 175 (383)
T ss_dssp CCCCTTCEEEEEEESC
T ss_pred CCCCCCCEEEEEEccc
Confidence 0001257999997643
No 350
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=78.28 E-value=3.1 Score=41.81 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL 599 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a--Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~Lt~~~Ie~l~~~~ 599 (658)
..+.+|||+-||.|.+...+.+. +. -++++|++ ......+......+... ..+..+|+.+... .
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 230 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---------G 230 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---------C
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---------C
Confidence 56689999999999999998876 44 36789999 66665555443322111 2244566654321 1
Q ss_pred CCccEEEecCCCCCc
Q 006172 600 GSIDFVICQNSVPQI 614 (658)
Q Consensus 600 g~~DLVIGGpPCQ~F 614 (658)
+++|+|+....-..+
T Consensus 231 ~~~D~v~~~~~l~~~ 245 (335)
T 2r3s_A 231 NDYDLVLLPNFLHHF 245 (335)
T ss_dssp SCEEEEEEESCGGGS
T ss_pred CCCcEEEEcchhccC
Confidence 248988876655544
No 351
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=77.79 E-value=4.2 Score=40.43 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=47.0
Q ss_pred CCCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+||||=||.|+.+.-+.+ .|-. -.|+++|+++...+.+...-.. .++..++.+|++....- . ...+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence 3578999999999998877754 3322 1478999999764333211111 12233456787754211 0 01257
Q ss_pred ccEEEecCC
Q 006172 602 IDFVICQNS 610 (658)
Q Consensus 602 ~DLVIGGpP 610 (658)
||+|+-..|
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 898875543
No 352
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=77.70 E-value=2.4 Score=40.94 Aligned_cols=39 Identities=10% Similarity=-0.027 Sum_probs=31.3
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHH
Q 006172 96 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT 136 (658)
Q Consensus 96 s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~ 136 (658)
.+..+.+..|+.|||+++.|..|+..|+.+- +.=+++|+
T Consensus 128 pee~eaI~rL~~mGF~r~~viqA~~ac~kne--e~Aan~L~ 166 (171)
T 2qsf_X 128 PEDDQAISRLCELGFERDLVIQVYFACDKNE--EAAANILF 166 (171)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCH--HHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHcCCCH--HHHHHHHH
Confidence 3456789999999999999999999999873 33455555
No 353
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=77.44 E-value=2.2 Score=39.89 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred hhhcccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhh
Q 006172 512 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK 591 (658)
Q Consensus 512 ~~~lsvLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~ 591 (658)
...+..|... +.+.+|||+-||.|.+...+ +. .++++|+++.. ..+..+|+.++..
T Consensus 56 ~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l---~~---~v~~~D~s~~~---------------~~~~~~d~~~~~~-- 111 (215)
T 2zfu_A 56 DRIARDLRQR-PASLVVADFGCGDCRLASSI---RN---PVHCFDLASLD---------------PRVTVCDMAQVPL-- 111 (215)
T ss_dssp HHHHHHHHTS-CTTSCEEEETCTTCHHHHHC---CS---CEEEEESSCSS---------------TTEEESCTTSCSC--
T ss_pred HHHHHHHhcc-CCCCeEEEECCcCCHHHHHh---hc---cEEEEeCCCCC---------------ceEEEeccccCCC--
Confidence 3344444433 45678999999999987666 33 46789999861 1245667766431
Q ss_pred HHHhhhccCCccEEEecC
Q 006172 592 FESLIHKLGSIDFVICQN 609 (658)
Q Consensus 592 Ie~l~~~~g~~DLVIGGp 609 (658)
..+.||+|+...
T Consensus 112 ------~~~~fD~v~~~~ 123 (215)
T 2zfu_A 112 ------EDESVDVAVFCL 123 (215)
T ss_dssp ------CTTCEEEEEEES
T ss_pred ------CCCCEeEEEEeh
Confidence 124699999654
No 354
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=76.58 E-value=7.5 Score=39.77 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+|||+-||.|.+...+.+.+-.. .++++|+ +......+..+...+.. ...++.+|+.+- + ..+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~------~~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP----L------PVT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC----C------SCC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC-EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc----C------CCC
Confidence 456899999999999999998875322 3578999 88777766655433221 223445665431 1 124
Q ss_pred ccEEEecCCCCCc
Q 006172 602 IDFVICQNSVPQI 614 (658)
Q Consensus 602 ~DLVIGGpPCQ~F 614 (658)
+|+|+.......+
T Consensus 249 ~D~v~~~~vl~~~ 261 (374)
T 1qzz_A 249 ADVVLLSFVLLNW 261 (374)
T ss_dssp EEEEEEESCGGGS
T ss_pred CCEEEEeccccCC
Confidence 8988876554443
No 355
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=76.52 E-value=1.9 Score=41.95 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=49.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+|||+=||.|.....+.+.+. .-+++||+++...+..+.+....+ ....++.+|...+... ..-+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~------~~~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT------LPDGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG------SCTTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc------ccccCC
Confidence 4678999999999999888877653 457889999998888777544322 1222334454333211 012568
Q ss_pred cEEEe
Q 006172 603 DFVIC 607 (658)
Q Consensus 603 DLVIG 607 (658)
|.|+.
T Consensus 130 D~i~~ 134 (236)
T 3orh_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98864
No 356
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=76.41 E-value=2.8 Score=43.30 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=36.4
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+-.|||.|||.|...++.+++|.+ .+++|+++....+.+..+
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~---~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF 294 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCC---EEEEeCCHHHHHHHHHHH
Confidence 4567999999999999999999964 578999999887776544
No 357
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=75.40 E-value=6.5 Score=42.75 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRIL 565 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~ 565 (658)
..+.+||||-||.|.+.+.+.+. |. ..+++||+++.+....
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHH
Confidence 35678999999999999888874 53 2478999999876554
No 358
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=74.69 E-value=7.8 Score=38.67 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=52.3
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..|.+||||-||.|.+..-+.+. |-. -.|+++|+++...+.++..-.. .++...+..|..+...- ....+.
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~--~~ni~~V~~d~~~p~~~-----~~~~~~ 147 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRD--RRNIFPILGDARFPEKY-----RHLVEG 147 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTT--CTTEEEEESCTTCGGGG-----TTTCCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHh--hcCeeEEEEeccCcccc-----ccccce
Confidence 45799999999999999888753 533 2478999999988777654221 22223345666543321 112357
Q ss_pred ccEEEecCCC
Q 006172 602 IDFVICQNSV 611 (658)
Q Consensus 602 ~DLVIGGpPC 611 (658)
+|+|+.-.|.
T Consensus 148 vDvVf~d~~~ 157 (233)
T 4df3_A 148 VDGLYADVAQ 157 (233)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEeccC
Confidence 8988865543
No 359
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=74.20 E-value=3 Score=33.76 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=26.5
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELA 204 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc---G~da~i~eL~ 204 (658)
+-+..|+.+||++.||..|+.++ ..+.++++|+
T Consensus 19 ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lI 54 (62)
T 1ixs_A 19 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 54 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 45568999999999999999998 4466677664
No 360
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=73.96 E-value=3.4 Score=40.11 Aligned_cols=83 Identities=14% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHH------HHHHHHHHhhhcCC-CCCcccccc-ccccChhhHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSET------NRRILKRWWESSGQ-TGELVQIED-IQALTTKKFE 593 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~------a~~t~k~~~~~~n~-~g~l~~~~D-I~~Lt~~~Ie 593 (658)
+.+.+|||+-||.|.+...+.+. |-. ..++++|+++. .....+......+. ....++..| +... .+.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~ 117 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD---LGP 117 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC---CGG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc---cCC
Confidence 35678999999999999888876 422 24789999985 44444444332211 112233444 2111 110
Q ss_pred HhhhccCCccEEEecCCCC
Q 006172 594 SLIHKLGSIDFVICQNSVP 612 (658)
Q Consensus 594 ~l~~~~g~~DLVIGGpPCQ 612 (658)
...+.||+|+...+..
T Consensus 118 ---~~~~~fD~v~~~~~l~ 133 (275)
T 3bkx_A 118 ---IADQHFDRVVLAHSLW 133 (275)
T ss_dssp ---GTTCCCSEEEEESCGG
T ss_pred ---CCCCCEEEEEEccchh
Confidence 0125799998765543
No 361
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=73.34 E-value=7.8 Score=39.71 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=42.1
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCC-Ccccccccccc
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQAL 587 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g-~l~~~~DI~~L 587 (658)
++.+.+|||+-||.|.+...+.+..-.. -++++|+ +......+..+...+..+ ..++.+|+.+.
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCC-eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 4566899999999999999998873222 3578899 877777666554332222 22445665543
No 362
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=73.01 E-value=1.6 Score=43.98 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=28.9
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHH
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 560 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~ 560 (658)
++.+.+||||=||.||++..+.+.| .|++||+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m 106 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTL 106 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchh
Confidence 4456899999999999998888773 3789999884
No 363
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=72.50 E-value=3.7 Score=36.41 Aligned_cols=41 Identities=27% Similarity=0.506 Sum_probs=34.9
Q ss_pred hhhhhhhccCCCCHHHHHHHHHH----hCCC--CHHHHHHHHHHHhh
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEE----KGQD--NVDLLLETLIEYNA 53 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe----~Ge~--d~d~iLE~LLty~a 53 (658)
++++...+.|||....|.++++. +|.. ..+.||..||.-+.
T Consensus 28 s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 28 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp CTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 55889999999999999999887 4766 68999999997655
No 364
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=72.38 E-value=7.6 Score=37.14 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=46.1
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
+.+.+||||=||.|....-|.+.+=. ..|+++|+++.+.+.+...-... .+...+.+|+.+... .....+.|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~-----~~~~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK-----YSGIVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG-----TTTTCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchh-----hcccccce
Confidence 45679999999999998877654212 24789999997644332221111 122234567665311 00112579
Q ss_pred cEEEec
Q 006172 603 DFVICQ 608 (658)
Q Consensus 603 DLVIGG 608 (658)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999865
No 365
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=71.86 E-value=2.2 Score=44.06 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHH
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETN 561 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a 561 (658)
.+.+|||+=||.|+++..|.+.|. .-|++||+++..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~m 120 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQ 120 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSC
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHH
Confidence 567899999999999998888885 358899999864
No 366
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=71.03 E-value=10 Score=38.61 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=50.3
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
..+.+|||+-||.|.+...+.+.+-.+ .++.+|+ +......+.+....+.. ...++.+|+.+- + ..+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~------~~~ 249 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP----L------PRK 249 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC----C------SSC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC----C------CCC
Confidence 456799999999999999998876443 3567888 77666666555433221 222445666431 1 124
Q ss_pred ccEEEecCCCCCc
Q 006172 602 IDFVICQNSVPQI 614 (658)
Q Consensus 602 ~DLVIGGpPCQ~F 614 (658)
+|+|+.......+
T Consensus 250 ~D~v~~~~vl~~~ 262 (360)
T 1tw3_A 250 ADAIILSFVLLNW 262 (360)
T ss_dssp EEEEEEESCGGGS
T ss_pred ccEEEEcccccCC
Confidence 8888876544333
No 367
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=70.12 E-value=1.2 Score=43.84 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
.+.+||||=||.|.+...+...|+ ..|+++|+++.+.+..+.|..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHh
Confidence 567899999999888777777786 358899999999998887643
No 368
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=69.06 E-value=3.4 Score=42.87 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCH---HHHHHHHHHh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE---TNRRILKRWW 569 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~---~a~~t~k~~~ 569 (658)
+.+-.|||.|||.|...++..++|.+ .+++|+++ ....+.+..+
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r~---~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGRN---SICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTCE---EEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCCc---EEEEECCccHHHHHHHHHHHH
Confidence 34567999999999999999999964 57899999 6555554433
No 369
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=68.90 E-value=2.9 Score=41.06 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 564 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t 564 (658)
+.+.+||||-||.|+++..|.+.|.. .|+++|+++.....
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~ 75 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAW 75 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCH
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHH
Confidence 35678999999999999999998853 57899999876443
No 370
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=67.34 E-value=6.6 Score=41.63 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=44.8
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT 588 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt 588 (658)
+.+||++-.|.|.++..|...+- .+-++++|+|+.....|+.... ...-.++.+|+-+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~~---~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhcc---CCCEEEEECCccchh
Confidence 57899999999999999997521 1347899999999888876431 222346789995554
No 371
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=66.70 E-value=3.7 Score=39.97 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.5
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006172 171 MEITLQLLEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 171 m~k~~~L~~MGf~e~Eas~AI~rcG~d 197 (658)
.+|+..|++|||++++|..|+.+++=|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd 190 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWD 190 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 468889999999999999999999875
No 372
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=63.56 E-value=9.2 Score=37.05 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=38.2
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHH-HH---HHHHhhhcCCCCCccccccccccC
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNR-RI---LKRWWESSGQTGELVQIEDIQALT 588 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~-~t---~k~~~~~~n~~g~l~~~~DI~~Lt 588 (658)
.+-+|||+=||.|.+...+.+..-. ..++++|+++.+. +. .+......+.....+..+|+.++.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh
Confidence 4567999999999999888754322 3478999994432 11 122111112222334567777764
No 373
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=63.34 E-value=7.9 Score=38.03 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=31.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh-CCCCchHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL-GKDAPVYELVDFIT 136 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~-G~d~~i~~L~d~I~ 136 (658)
..+.+..|+.+||++.|+.+|+.++ .++.++++|+-.-|
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~AL 199 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSETLIREAL 199 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 4689999999999999999999998 55566677765433
No 374
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=61.54 E-value=12 Score=38.96 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=34.8
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 566 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k 566 (658)
+.+.+|||+=||.|.+...|.+.|.+ ++++|+++...+..+
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~---v~gvD~s~~~~~~a~ 146 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVR---HLGFEPSSGVAAKAR 146 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCE---EEEECCCHHHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCc---EEEECCCHHHHHHHH
Confidence 35679999999999999999999974 688999998766654
No 375
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=61.49 E-value=6.9 Score=42.66 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCCCcccccCCC------CChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006172 523 PGGLTMLSVFSG------IGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI 596 (658)
Q Consensus 523 ~~~l~vLdLFSG------iGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~ 596 (658)
..+.+||||=|| .||.++.+-+.-++-..++++|+++... . ......++.+|+.++.-. ..+.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~--~~l~ 283 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFL--DRIA 283 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHH--HHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchh--hhhh
Confidence 456899999999 6888777654311112478999999852 1 122334667888776321 1111
Q ss_pred hccCCccEEEe
Q 006172 597 HKLGSIDFVIC 607 (658)
Q Consensus 597 ~~~g~~DLVIG 607 (658)
...+.||+|+.
T Consensus 284 ~~d~sFDlVis 294 (419)
T 3sso_A 284 RRYGPFDIVID 294 (419)
T ss_dssp HHHCCEEEEEE
T ss_pred cccCCccEEEE
Confidence 12368999985
No 376
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.47 E-value=60 Score=30.04 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=70.1
Q ss_pred hhhhhhccC-----C-----CCHHHHHHHHHHh---CCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCc
Q 006172 14 NLRSSFIGM-----G-----FSPSLVDKVIEEK---GQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEI 80 (658)
Q Consensus 14 ~l~~~fi~M-----G-----F~~e~V~KAIqe~---Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~ 80 (658)
-|+..|..+ | |+++.|+.||... |==|-....+..+....-. +
T Consensus 24 EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~--g---------------------- 79 (159)
T 3c1d_A 24 ELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRK--G---------------------- 79 (159)
T ss_dssp HHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHT--T----------------------
T ss_pred HHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhC--C----------------------
Confidence 366777775 6 8888888887755 3336666666666544321 1
Q ss_pred cCCCCCCCCCCccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCC
Q 006172 81 STMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNE 160 (658)
Q Consensus 81 s~~~~~~~e~~~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~e 160 (658)
.+ .-.....|..-|.+.+.|..|++++..+ . .+++--++.-..... ..+
T Consensus 80 --------------~G-~~~I~~eL~~KGI~~~~i~~al~~~~~d-~-~~~a~~l~~kk~~~~----~~~---------- 128 (159)
T 3c1d_A 80 --------------YG-PARIRQELNQKGISREATEKAMREADID-W-AALARDQATRKYGEP----LPT---------- 128 (159)
T ss_dssp --------------CC-HHHHHHHHHHTTCCHHHHHHHHHHHCCC-H-HHHHHHHHHHHHCSS----CCC----------
T ss_pred --------------cc-HHHHHHHHHHcCCCHHHHHHHHHHcCHh-H-HHHHHHHHHHHcCCC----CCC----------
Confidence 00 3345678999999999999999998652 2 222222222222110 000
Q ss_pred CCCcccccchhhhHH-HHHhcCCCHHHHHHHHHh
Q 006172 161 DKSDETLYGTMEITL-QLLEMGFSENQVSLAIEK 193 (658)
Q Consensus 161 d~~~e~~~~~m~k~~-~L~~MGf~e~Eas~AI~r 193 (658)
+ .....|+. +|+.=||+-+.+..+|..
T Consensus 129 ~------~~~~~K~~~~L~rrGF~~~~i~~~l~~ 156 (159)
T 3c1d_A 129 V------FSEKVKIQRFLLYRGYLMEDIQDIWRN 156 (159)
T ss_dssp S------HHHHHHHHHHHHHTTCCHHHHTTCC--
T ss_pred C------HHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 0 12335665 999999999999766553
No 377
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=60.98 E-value=16 Score=38.39 Aligned_cols=88 Identities=19% Similarity=0.110 Sum_probs=48.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCCccccc----chhh-
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY----GTME- 172 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a~q~a~~~~~e~~D~~~~~d~~~ed~~~e~~~----~~m~- 172 (658)
..+.+..|++|||+.+.|..+|...-. ..-..|.+.|-....++-..+.-.. . =.+....+ ..+.
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~-il~~~l~~~i~~L~~LGls~e~V~k------i---L~k~P~lL~~s~e~L~~ 115 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRG-ASLQQLLDIISEFILLGLNPEPVCV------V---LKKSPQLLKLPIMQMRK 115 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSS-CCHHHHHHHHHHHHHTTCCHHHHHH------H---HHHCGGGGGSCHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcc-cchhHHHHHHHHHHHcCCCHHHHHH------H---HHhChhhccCCHHHHHH
Confidence 566788899999999999999999533 2223333333322223211000000 0 00000011 1233
Q ss_pred hHHHHHhcCCCHHHHHHHHHhhC
Q 006172 173 ITLQLLEMGFSENQVSLAIEKFG 195 (658)
Q Consensus 173 k~~~L~~MGf~e~Eas~AI~rcG 195 (658)
++.+|.++|++++++...|.+|-
T Consensus 116 ~l~fL~~lGl~~~~i~~ll~~~P 138 (335)
T 4fp9_B 116 RSSYLQKLGLGEGKLKRVLYCCP 138 (335)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHCG
T ss_pred HHHHHHHcCCCHHHHHHHHHhCc
Confidence 33488899999999988888874
No 378
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=60.89 E-value=2.9 Score=42.97 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.4
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET 557 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEi 557 (658)
++.+.+||||=||.||++.-+.+.| .|++||+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~ 111 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKG 111 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEec
Confidence 4456899999999999999888875 2678888
No 379
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=58.83 E-value=5.6 Score=39.42 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=24.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCC
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGSKT 198 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~da 198 (658)
+|+..|++|||+++.|..|+.+||-|.
T Consensus 171 ~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 171 DLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 577899999999999999999999984
No 380
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=57.56 E-value=14 Score=36.54 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=32.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~---G~d~~i~~L~d~I~a 137 (658)
..+.+..|+.+||++.++.+|+.++ .++.++++|+-.-|.
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk 206 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALS 206 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999997 345667777765543
No 381
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=55.88 E-value=18 Score=31.89 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh-----CCCCchHHHHHHHHHHhhh
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKL-----GKDAPVYELVDFITAAQIS 141 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~-----G~d~~i~~L~d~I~a~q~a 141 (658)
...+...+.|||....|..+|++- ..=.++++||..|+.++..
T Consensus 28 s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~ 75 (104)
T 2kna_A 28 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKD 75 (104)
T ss_dssp CTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHh
Confidence 347788999999999999999883 3445689999999988764
No 382
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.69 E-value=15 Score=30.32 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=32.5
Q ss_pred hhhhhccCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 15 LRSSFIGMGFS---PSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 15 l~~~fi~MGF~---~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
.+.+|..| || .+.|.++++.+|. |.|.-++.||..+.
T Consensus 21 ~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 21 AMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCC
Confidence 67889999 85 7899999999998 89999999999765
No 383
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=55.10 E-value=11 Score=40.40 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+..|++||||=|..||.+.-+-+.|.. |++||+.+-.-... ..++..++.+|...+... .+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~---V~aVD~~~l~~~l~-------~~~~V~~~~~d~~~~~~~--------~~~ 270 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMW---VYSVDNGPMAQSLM-------DTGQVTWLREDGFKFRPT--------RSN 270 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCE---EEEECSSCCCHHHH-------TTTCEEEECSCTTTCCCC--------SSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCE---EEEEEhhhcChhhc-------cCCCeEEEeCccccccCC--------CCC
Confidence 456899999999999999999988864 78999877543221 122333455666554432 257
Q ss_pred ccEEEecCCCCC
Q 006172 602 IDFVICQNSVPQ 613 (658)
Q Consensus 602 ~DLVIGGpPCQ~ 613 (658)
+|+|+.==-|++
T Consensus 271 ~D~vvsDm~~~p 282 (375)
T 4auk_A 271 ISWMVCDMVEKP 282 (375)
T ss_dssp EEEEEECCSSCH
T ss_pred cCEEEEcCCCCh
Confidence 999987555543
No 384
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=54.85 E-value=5.2 Score=46.53 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=52.5
Q ss_pred cccccCC---CCCcccccCCCCChHHH----HHHHcC---------CceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCcc
Q 006172 517 VLKSMFP---GGLTMLSVFSGIGGAEV----TLHRLG---------IKLKGVISIETSETNRRILKRWWESSGQT-GELV 579 (658)
Q Consensus 517 vLK~~f~---~~l~vLdLFSGiGGlsl----GL~~aG---------i~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~ 579 (658)
.+++.++ ....|+|+=||-|-++. |.+.+| -. .-|+|||.++.|..+++..-. .+.. ...+
T Consensus 399 al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~-~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtV 476 (745)
T 3ua3_A 399 ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLK-VKLYIVEKNPNAIVTLKYMNV-RTWKRRVTI 476 (745)
T ss_dssp HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCE-EEEEEEECCHHHHHHHHHHHH-HTTTTCSEE
T ss_pred HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccc-cEEEEEeCChHHHHHHHHHHh-cCCCCeEEE
Confidence 3455443 24679999999999974 233345 22 257899999988777665322 1111 2335
Q ss_pred ccccccccChhhHHHhhhccCCccEEEecC
Q 006172 580 QIEDIQALTTKKFESLIHKLGSIDFVICQN 609 (658)
Q Consensus 580 ~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGp 609 (658)
+.+|++++..- .-....+.+||||---
T Consensus 477 I~gd~eev~lp---~~~~~~ekVDIIVSEl 503 (745)
T 3ua3_A 477 IESDMRSLPGI---AKDRGFEQPDIIVSEL 503 (745)
T ss_dssp EESCGGGHHHH---HHHTTCCCCSEEEECC
T ss_pred EeCchhhcccc---cccCCCCcccEEEEec
Confidence 67888877531 0001236799988543
No 385
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=54.60 E-value=12 Score=38.45 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=44.6
Q ss_pred CCCCCcccccCC------CCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCcc-ccccccccChhhHHH
Q 006172 522 FPGGLTMLSVFS------GIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV-QIEDIQALTTKKFES 594 (658)
Q Consensus 522 f~~~l~vLdLFS------GiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~-~~~DI~~Lt~~~Ie~ 594 (658)
.+.+.+||||=| |.|+ .+..+.+|-. -.|+++|+++. + .+..+ +.+|+.++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v---------~~v~~~i~gD~~~~~~~---- 121 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V---------SDADSTLIGDCATVHTA---- 121 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B---------CSSSEEEESCGGGCCCS----
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C---------CCCEEEEECccccCCcc----
Confidence 346789999999 4477 6666776622 24789999987 1 12346 77898866421
Q ss_pred hhhccCCccEEEecCCC
Q 006172 595 LIHKLGSIDFVICQNSV 611 (658)
Q Consensus 595 l~~~~g~~DLVIGGpPC 611 (658)
+.||+|+.-.++
T Consensus 122 -----~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 122 -----NKWDLIISDMYD 133 (290)
T ss_dssp -----SCEEEEEECCCC
T ss_pred -----CcccEEEEcCCc
Confidence 479999975443
No 386
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=54.10 E-value=16 Score=34.14 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=49.2
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCc
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNV 92 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~ 92 (658)
-++...|..-|++.+.|..|+++..++..+.+.+++-. . .... . . .
T Consensus 85 ~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~K-k-~~~~--~--------------------------~--~-- 130 (162)
T 3dfg_A 85 LHIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIRR-R-FGED--G--------------------------P--V-- 130 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHHH-H-HCTT--C--------------------------C--C--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHHH-h-cCCC--C--------------------------C--C--
Confidence 45888999999999999999999854333333333322 1 1100 0 0 0
Q ss_pred cccchhHHHHHHHHhcCCChHHHHHHHHHhCC
Q 006172 93 MDEGLHIEKRASLLMMNFSVNEVDFALDKLGK 124 (658)
Q Consensus 93 ~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~ 124 (658)
+.....+.+.+|+.=||+-+.|..||+...+
T Consensus 131 -~~~~k~K~~~~L~rrGF~~~~I~~~l~~~~~ 161 (162)
T 3dfg_A 131 -DLAQRRKAADLLARRGFDGNSIRLATRFDLE 161 (162)
T ss_dssp -SHHHHHHHHHHHHHTTCCHHHHHHHTTC---
T ss_pred -CHHHHHHHHHHHHHCCCCHHHHHHHHhcCcC
Confidence 0123567778999999999999999876443
No 387
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=51.19 E-value=10 Score=36.58 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=27.1
Q ss_pred hhhhHHHHHhcCCCHHHHHHHHHhhCCCCCh
Q 006172 170 TMEITLQLLEMGFSENQVSLAIEKFGSKTPI 200 (658)
Q Consensus 170 ~m~k~~~L~~MGf~e~Eas~AI~rcG~da~i 200 (658)
+.+++..|+.|||+++.|-.|...|+-+..+
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~ 160 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEA 160 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHH
Confidence 3578889999999999999999999988543
No 388
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=50.92 E-value=17 Score=37.19 Aligned_cols=44 Identities=7% Similarity=0.016 Sum_probs=36.6
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 570 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~ 570 (658)
+.+-+||||=||.|=+++++. .+ ..++++|||+...+..+.+..
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~ 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFAR 147 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHH
Confidence 446799999999999999988 33 358899999999999988743
No 389
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=49.47 E-value=3.5 Score=40.93 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCchHHHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA 137 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~i~~L~d~I~a 137 (658)
..+++..|+.|||+++.|..|+..+|-+. +.-+|.|+.
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~--~~~~~~l~~ 214 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNE--TLALNTLLE 214 (216)
T ss_dssp ----------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCch--HHHHHHHhc
Confidence 35688999999999999999999999875 355555553
No 390
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=49.09 E-value=12 Score=38.72 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=40.0
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhh
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES 571 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~ 571 (658)
+..-+||||=||.|=+++.+..+.-. ..++++|||+.+....+.+...
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~ 178 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTR 178 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHh
Confidence 34679999999999999999887433 5789999999999999887654
No 391
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=48.94 E-value=28 Score=36.07 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=51.3
Q ss_pred CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc--cCCc
Q 006172 525 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK--LGSI 602 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~--~g~~ 602 (658)
+-.+||.-+|.||-+.++-+.+. .|+++|.|+.+....+. ... ....++.++-.++. ..+.. .+.|
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~-----~~L~~~g~~~v 90 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLK-----RHLAALGVERV 90 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHH-----HHHHHTTCSCE
T ss_pred CCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHH-----HHHHHcCCCCc
Confidence 34799999999999999988754 47899999999887665 322 11224455555443 22222 2579
Q ss_pred cEEEecCCCC
Q 006172 603 DFVICQNSVP 612 (658)
Q Consensus 603 DLVIGGpPCQ 612 (658)
|.|+-..++.
T Consensus 91 DgIL~DLGvS 100 (285)
T 1wg8_A 91 DGILADLGVS 100 (285)
T ss_dssp EEEEEECSCC
T ss_pred CEEEeCCccc
Confidence 9999765543
No 392
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=48.26 E-value=11 Score=38.18 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.5
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006172 171 MEITLQLLEMGFSENQVSLAIEKFGSK 197 (658)
Q Consensus 171 m~k~~~L~~MGf~e~Eas~AI~rcG~d 197 (658)
.+|+..|++|||+++.|..|+.+|+=|
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd 242 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWD 242 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 367789999999999999999999876
No 393
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=48.10 E-value=9.9 Score=38.86 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.4
Q ss_pred ccccCCC-CCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHH
Q 006172 518 LKSMFPG-GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK 566 (658)
Q Consensus 518 LK~~f~~-~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k 566 (658)
+.+++|. .-+.++.|+|.|+....+.. +.++.+|+|+...+.|+
T Consensus 28 i~~~lp~~~~~yvEpF~GggaV~~~~~~-----~~~i~ND~n~~Lin~y~ 72 (284)
T 2dpm_A 28 IRELIPKTYNRYFEPFVGGGALFFDLAP-----KDAVINDFNAELINCYQ 72 (284)
T ss_dssp HHHHSCSSCSCEEETTCTTCHHHHHHCC-----SEEEEEESCHHHHHHHH
T ss_pred HHHHhccccCEEEeecCCccHHHHhhhc-----cceeeeecchHHHHHHH
Confidence 4444554 34789999998887665522 45788999999877664
No 394
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.89 E-value=21 Score=29.91 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhCCCCc
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKLGKDAP 127 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~G~d~~ 127 (658)
..+++.+|..-|-+++||..|+.+.|...+
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 778999999999999999999999987654
No 395
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=45.57 E-value=8.6 Score=39.08 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=32.2
Q ss_pred cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172 517 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 517 vLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~ 567 (658)
.+.+++|..-+.++.|+|.|+....+ . .+.++.+|+|+...+.|+.
T Consensus 20 ~i~~~~p~~~~yvEpF~Ggg~V~~~~--~---~~~~i~ND~n~~lin~y~~ 65 (278)
T 2g1p_A 20 DIKRHLPKGECLVEPFVGAGSVFLNT--D---FSRYILADINSDLISLYNI 65 (278)
T ss_dssp HHHHHCCCCSEEEETTCTTCHHHHTC--C---CSEEEEEESCHHHHHHHHH
T ss_pred HHHHhccccCeEEeeccCccHHHHhh--c---ccceEEEeccHHHHHHHHH
Confidence 34455565568999999988875543 2 2457889999998776654
No 396
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=45.21 E-value=28 Score=36.04 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=13.6
Q ss_pred hcCCCHHHHHHHHHhh
Q 006172 179 EMGFSENQVSLAIEKF 194 (658)
Q Consensus 179 ~MGf~e~Eas~AI~rc 194 (658)
.+||+++|+..+|.+|
T Consensus 249 ~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 249 SLGCTEEEVQKFVLSY 264 (343)
T ss_dssp TTTCCHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHhC
Confidence 6899999998888876
No 397
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=42.57 E-value=8.9 Score=38.80 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=28.9
Q ss_pred CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHH
Q 006172 522 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 560 (658)
Q Consensus 522 f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~ 560 (658)
++.+.+||||=||.||++..+.+.| -|++||+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m 114 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTL 114 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchh
Confidence 4456899999999999999888774 3789999884
No 398
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=41.56 E-value=23 Score=37.34 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=34.9
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHh----CCC--CHHHHHHHHHHHhh
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEK----GQD--NVDLLLETLIEYNA 53 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~----Ge~--d~d~iLE~LLty~a 53 (658)
++++..-+.|||+.+.|.+++++. |.. .++.||+.||.-+.
T Consensus 120 ~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~~~~ 166 (345)
T 3t6p_A 120 TPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLNAED 166 (345)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHhccc
Confidence 567888899999999999998754 776 89999999997655
No 399
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=41.49 E-value=34 Score=33.45 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=38.7
Q ss_pred HHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEec
Q 006172 538 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 608 (658)
Q Consensus 538 lslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~----l~~~~g~~DLVIGG 608 (658)
....|.+.|.+ |+.++.++...+.+..-....+......+..||++- +.+.. ....+|.+|+++-.
T Consensus 24 iA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 24 VAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD--EEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH--HHHHHHHHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH--HHHHHHHHHHHHHhCCCCEEEec
Confidence 45667789986 344667766555444433333333344566788754 33333 33467999999843
No 400
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=40.30 E-value=62 Score=31.52 Aligned_cols=59 Identities=27% Similarity=0.365 Sum_probs=38.8
Q ss_pred CCCcccccCCCCChHHHHHHHc-CCceeeEEEeeCCHHHHHHHHHHhhhcCC--C-CCcccccccccc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ--T-GELVQIEDIQAL 587 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~a-Gi~~k~vvavEid~~a~~t~k~~~~~~n~--~-g~l~~~~DI~~L 587 (658)
+.-+||++=| |.-++-|-++ | ..|++||+|+.-.+..+.||...+. . ...++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCCEEEEECc--hHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 3457888755 4544544444 3 3588999999999998999987642 2 223566786543
No 401
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=40.22 E-value=19 Score=35.31 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=26.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh-CCCCChhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF-GSKTPISELA 204 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc-G~da~i~eL~ 204 (658)
+-...|+.+||++.||..|+.++ .++.++++|+
T Consensus 162 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 195 (203)
T 1cuk_A 162 EAVARLVALGYKPQEASRMVSKIARPDASSETLI 195 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 45569999999999999999998 5566676654
No 402
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=39.70 E-value=43 Score=33.79 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=48.8
Q ss_pred CCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006172 524 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI 602 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~ 602 (658)
.+.+|||+=||.|.+...+.+..-.. .++.+|+ +......+.+....+.. ...++.+|+.+... . ..+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~~~ 249 (352)
T 3mcz_A 179 RARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN-----F--EGGAA 249 (352)
T ss_dssp TCCEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG-----G--TTCCE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc-----c--CCCCc
Confidence 36899999999999999998874333 3567899 65555555444332211 12244566654321 0 11358
Q ss_pred cEEEecCCCCCc
Q 006172 603 DFVICQNSVPQI 614 (658)
Q Consensus 603 DLVIGGpPCQ~F 614 (658)
|+|+...-...+
T Consensus 250 D~v~~~~vlh~~ 261 (352)
T 3mcz_A 250 DVVMLNDCLHYF 261 (352)
T ss_dssp EEEEEESCGGGS
T ss_pred cEEEEecccccC
Confidence 988876544433
No 403
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=39.36 E-value=17 Score=41.50 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCcccccCCCCChHHHHH----HHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 525 GLTMLSVFSGIGGAEVTL----HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL----~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
...|+++=||-|-+.... .++|-++ -|+|||.++.|..+.+..-.+.-.....++.+|+++++. ..
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~v-kVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~L---------PE 427 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRI-KLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVA---------PE 427 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEE-EEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCC---------SS
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccC---------Cc
Confidence 356899999999874333 3444443 368999999988776653111101112356788888753 24
Q ss_pred CccEEE
Q 006172 601 SIDFVI 606 (658)
Q Consensus 601 ~~DLVI 606 (658)
++||||
T Consensus 428 KVDIIV 433 (637)
T 4gqb_A 428 KADIIV 433 (637)
T ss_dssp CEEEEE
T ss_pred ccCEEE
Confidence 688887
No 404
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=38.69 E-value=28 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=24.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCCC
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGSKTP 199 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~da~ 199 (658)
.|+.+|..-|-+++|+..|+.|.|..++
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 5777999999999999999999998654
No 405
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=38.46 E-value=9 Score=38.51 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHH
Q 006172 516 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR 567 (658)
Q Consensus 516 svLK~~f~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~ 567 (658)
..+.+++|..-+.++.|+|.|+....+. .+ ++.+|+|+...+.|+.
T Consensus 16 ~~i~~~lP~~~~yvEpF~GggaV~~~~~-----~~-~viNDin~~li~~~~~ 61 (259)
T 1yf3_A 16 PELKSHFPKYNRFVDLFCGGLSVSLNVN-----GP-VLANDIQEPIIEMYKR 61 (259)
T ss_dssp HHHHHTCCCCSEEEETTCTTCTTGGGSC-----SS-EEEECSCHHHHHHHHH
T ss_pred HHHHHhCcccCeEEEecCCccHHHHhcc-----cc-EEEecCChHHHHHHHH
Confidence 3344556655689999999998865542 14 7789999998877764
No 406
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=37.49 E-value=65 Score=34.59 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=47.4
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC--------CCccccccccccChhhHHHhhh
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--------GELVQIEDIQALTTKKFESLIH 597 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~--------g~l~~~~DI~~Lt~~~Ie~l~~ 597 (658)
-+||=+=.|.||....+.+... +.+..||||+...+..+.|+...+.. ...++++|-.+. |+....
T Consensus 207 krVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~f----l~~~~~ 280 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPV----LKRYAK 280 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHH----HHHHHH
T ss_pred CeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHH----HHhhhh
Confidence 4677776777777666666553 56788999999999988886532110 011223333211 222222
Q ss_pred ccCCccEEEecCCCC
Q 006172 598 KLGSIDFVICQNSVP 612 (658)
Q Consensus 598 ~~g~~DLVIGGpPCQ 612 (658)
....+|+||.=.+-.
T Consensus 281 ~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 281 EGREFDYVINDLTAV 295 (381)
T ss_dssp HTCCEEEEEEECCSS
T ss_pred ccCceeEEEECCCCC
Confidence 335799999875533
No 407
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=35.66 E-value=7.8 Score=37.77 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHh---CCCCchHHHH
Q 006172 99 IEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELV 132 (658)
Q Consensus 99 ~~~~~~lv~MGF~eeev~~Ai~~~---G~d~~i~~L~ 132 (658)
.+.+..|+.+||++.++.+|+.++ .++.++++|+
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~li 183 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 183 (191)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 457889999999999999999997 2334444443
No 408
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=35.28 E-value=40 Score=31.99 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred hhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCCc
Q 006172 13 SNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNV 92 (658)
Q Consensus 13 s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~~ 92 (658)
-.++..|..-|.+.+.|..|+++..+++.-..+..|+.=. +..... ..
T Consensus 87 ~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk-~~~~~~-----------------------------~~-- 134 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKL-ANRYSH-----------------------------DS-- 134 (177)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHTTT-----------------------------SC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHH-HhhccC-----------------------------CC--
Confidence 4578889999999999999998764333222222222211 110000 00
Q ss_pred cccchhHHHHHHHHhcCCChHHHHHHHHHhCCC
Q 006172 93 MDEGLHIEKRASLLMMNFSVNEVDFALDKLGKD 125 (658)
Q Consensus 93 ~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d 125 (658)
......+.+.+|+.=||+.+.|..||+++..+
T Consensus 135 -~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 135 -YRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp -HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred -hHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCC
Confidence 01124566788999999999999999986443
No 409
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=35.09 E-value=37 Score=34.03 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=46.1
Q ss_pred CcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCccE
Q 006172 526 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSIDF 604 (658)
Q Consensus 526 l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL 604 (658)
.+|||+-||.|.+...+.+..-.. .++++|+ +......+..+...+. ....++.+|+.+ . + .+.+|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~------~~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA-RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E---V------PSNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC-EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C---C------CSSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC-EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C---C------CCCCCE
Confidence 799999999999999988763222 3578999 7665555544322110 112234555543 1 1 135888
Q ss_pred EEecCCCCCc
Q 006172 605 VICQNSVPQI 614 (658)
Q Consensus 605 VIGGpPCQ~F 614 (658)
|+.......+
T Consensus 237 v~~~~vl~~~ 246 (334)
T 2ip2_A 237 YLLSRIIGDL 246 (334)
T ss_dssp EEEESCGGGC
T ss_pred EEEchhccCC
Confidence 8866655444
No 410
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=34.49 E-value=1.2e+02 Score=29.88 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=19.6
Q ss_pred hhhhhhccCCCCHHHHHHHHHHhC
Q 006172 14 NLRSSFIGMGFSPSLVDKVIEEKG 37 (658)
Q Consensus 14 ~l~~~fi~MGF~~e~V~KAIqe~G 37 (658)
+.++.|...|++.+.|.|+|..+-
T Consensus 78 p~v~~L~~~Gls~~~i~~~l~~~P 101 (270)
T 3m66_A 78 TRVAYLHSKNFSKADVAQMVRKAP 101 (270)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHST
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCC
Confidence 466788888999999999988774
No 411
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=32.99 E-value=37 Score=27.03 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHh
Q 006172 98 HIEKRASLLMMNFSVNEVDFALDKL 122 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev~~Ai~~~ 122 (658)
..+++.+|..-|.+++||..|++|+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 7789999999999999999999874
No 412
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.40 E-value=54 Score=30.35 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
.-.+...|..-|.+.+.|..||++.-++..+.+.+++-. . +.. .. ..
T Consensus 82 ~~~I~~eL~~KGI~~~~i~~al~~~~~d~~~~a~~l~~k-k-~~~-~~-----------------------------~~- 128 (159)
T 3c1d_A 82 PARIRQELNQKGISREATEKAMREADIDWAALARDQATR-K-YGE-PL-----------------------------PT- 128 (159)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCCCHHHHHHHHHHH-H-HCS-SC-----------------------------CC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCHhHHHHHHHHHHH-H-cCC-CC-----------------------------CC-
Confidence 345788999999999999999999866333333332221 1 110 00 00
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHh
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKL 122 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~ 122 (658)
+.-...+.+.+|+.=||+.+.|..||+++
T Consensus 129 --~~~~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 129 --VFSEKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp --SHHHHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred --CHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 01235677899999999999998887654
No 413
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=32.06 E-value=34 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=26.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF---GSKTPISELAD 205 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc---G~da~i~eL~D 205 (658)
+-...|+.+||++.||..|+.++ .++.++++|+-
T Consensus 166 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 202 (212)
T 2ztd_A 166 PVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALR 202 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 45569999999999999999997 44666776643
No 414
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=31.99 E-value=35 Score=34.02 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=37.3
Q ss_pred HHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEec
Q 006172 538 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQ 608 (658)
Q Consensus 538 lslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~----l~~~~g~~DLVIGG 608 (658)
+...|.+.|.+ |+.+++++.....+.. .......+..||++- +.++. ...++|.+|++|-.
T Consensus 18 ia~~la~~Ga~---V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~--~~v~~~v~~~~~~~g~iDiLVNN 82 (247)
T 3ged_A 18 ICLDFLEAGDK---VCFIDIDEKRSADFAK-----ERPNLFYFHGDVADP--LTLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp HHHHHHHTTCE---EEEEESCHHHHHHHHT-----TCTTEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHCCCE---EEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCH--HHHHHHHHHHHHHcCCCCEEEEC
Confidence 35667899986 4557888765444332 122334456788754 33433 33468999999843
No 415
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=31.23 E-value=21 Score=35.03 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=31.8
Q ss_pred CCCcccccCCCCChHHHHHHH-cCCceeeEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL~~-aGi~~k~vvavEid~~a~~t~k~~~ 569 (658)
.+.+||||=||.|.+..-+.. .|. -|+++|+++.+....+.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~---~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFE---DITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCS---EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCC---eEEEeCCCHHHHHHHHHHH
Confidence 557899999999995543333 233 4789999999988777654
No 416
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=30.81 E-value=46 Score=33.27 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh----hhccCCccEEEe
Q 006172 539 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL----IHKLGSIDFVIC 607 (658)
Q Consensus 539 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l----~~~~g~~DLVIG 607 (658)
...|-+.|.+ |+.++.++...+....-....+ ...+.+..||++- +.++.+ ..++|.+|++|-
T Consensus 24 A~~la~~Ga~---Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~--~~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 24 AKKFALNDSI---VVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKK--KDVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSH--HHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCH--HHHHHHHHHHHHHcCCCCEEEE
Confidence 4567789985 4557888776544443322222 2233456788754 344433 346899999984
No 417
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=30.44 E-value=1.2e+02 Score=29.63 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=40.7
Q ss_pred hhhcccchhhhcccccccCC----CCCcccccCCCCChHHH----HHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC
Q 006172 504 HCFQTDTLGYHLSVLKSMFP----GGLTMLSVFSGIGGAEV----TLHRLGIKLKGVISIETSETNRRILKRWWESSGQT 575 (658)
Q Consensus 504 nsfqvdti~~~lsvLK~~f~----~~l~vLdLFSGiGGlsl----GL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~ 575 (658)
+.|+.+-..+|...+++.+. .+.++| +.-|.||+-. .|.+.|.+ |+.+..++.....+.......+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vl-ITGasggIG~~la~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~ 78 (286)
T 1xu9_A 3 HQHQHQHQHQHQQPLNEEFRPEMLQGKKVI-VTGASKGIGREMAYHLAKMGAH---VVVTARSKETLQKVVSHCLELGAA 78 (286)
T ss_dssp ------------CCCSSCCCGGGGTTCEEE-ESSCSSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCS
T ss_pred chhhccchhhhccccccCCChhhcCCCEEE-EeCCCcHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHhCCC
Confidence 34555555555555555432 122232 3344455533 34577975 445667765443332211111111
Q ss_pred CCccccccccccChhhHHHh----hhccCCccEEE
Q 006172 576 GELVQIEDIQALTTKKFESL----IHKLGSIDFVI 606 (658)
Q Consensus 576 g~l~~~~DI~~Lt~~~Ie~l----~~~~g~~DLVI 606 (658)
...++..|+++. +.+..+ ...++++|+||
T Consensus 79 ~~~~~~~Dl~d~--~~v~~~~~~~~~~~g~iD~li 111 (286)
T 1xu9_A 79 SAHYIAGTMEDM--TFAEQFVAQAGKLMGGLDMLI 111 (286)
T ss_dssp EEEEEECCTTCH--HHHHHHHHHHHHHHTSCSEEE
T ss_pred ceEEEeCCCCCH--HHHHHHHHHHHHHcCCCCEEE
Confidence 123456788753 233332 23468999998
No 418
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=29.86 E-value=31 Score=32.83 Aligned_cols=39 Identities=8% Similarity=0.034 Sum_probs=30.4
Q ss_pred cCCCCCcccccCCCCC-hHHHHHHH-cCCceeeEEEeeCCHHHH
Q 006172 521 MFPGGLTMLSVFSGIG-GAEVTLHR-LGIKLKGVISIETSETNR 562 (658)
Q Consensus 521 ~f~~~l~vLdLFSGiG-GlslGL~~-aGi~~k~vvavEid~~a~ 562 (658)
.+..+-+||++=||-| -.+.-|.+ .|++ |.++||++.|.
T Consensus 32 ~~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av 72 (153)
T 2k4m_A 32 CSGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHG 72 (153)
T ss_dssp HSCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSST
T ss_pred cCCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCcccc
Confidence 3445679999988888 47778876 9986 67899999864
No 419
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=29.07 E-value=32 Score=33.34 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCcccccCCCCChHHHHHHHc----CCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006172 525 GLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG 600 (658)
Q Consensus 525 ~l~vLdLFSGiGGlslGL~~a----Gi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g 600 (658)
+-+|||+=||.|+.+..|.+. +-. ..|++||+++...+..+. . .....++.+|+.++.. +..+ ...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~--l~~~--~~~ 151 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTT--FEHL--REM 151 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGG--GGGG--SSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHH--HHhh--ccC
Confidence 358999999999999988876 211 247899999976433221 0 1223356788876421 1111 112
Q ss_pred CccEEEe
Q 006172 601 SIDFVIC 607 (658)
Q Consensus 601 ~~DLVIG 607 (658)
.||+|+-
T Consensus 152 ~fD~I~~ 158 (236)
T 2bm8_A 152 AHPLIFI 158 (236)
T ss_dssp CSSEEEE
T ss_pred CCCEEEE
Confidence 5898774
No 420
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=28.84 E-value=39 Score=33.16 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred chhhhhhhccCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhccCCCCCCCccCcccCCCCCCCCCCccCCCCCCCCCC
Q 006172 12 GSNLRSSFIGMGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN 91 (658)
Q Consensus 12 ~s~l~~~fi~MGF~~e~V~KAIqe~Ge~d~d~iLE~LLty~al~~s~~~ss~s~~~~~~d~~e~~~~~~s~~~~~~~e~~ 91 (658)
.-.++..|..-|++.+.|..|+++.-+++...++..|+.=. +..... ..
T Consensus 129 ~~~I~~eL~~KGI~~~~I~~al~~~~~~~e~e~a~~l~~Kk-~~~~~~-----------------------------~~- 177 (221)
T 3d5l_A 129 PGIIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKL-FRRYRN-----------------------------QP- 177 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHGGGCCHHHHHHHHHHHHHHH-HHHTTT-----------------------------SC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhhccC-----------------------------CC-
Confidence 34578899999999999999999873322222222222211 111000 00
Q ss_pred ccccchhHHHHHHHHhcCCChHHHHHHHHHhCCCC
Q 006172 92 VMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDA 126 (658)
Q Consensus 92 ~~~~s~~~~~~~~lv~MGF~eeev~~Ai~~~G~d~ 126 (658)
......+.+.+|+.=||+-+.|..||+++..+.
T Consensus 178 --~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~ 210 (221)
T 3d5l_A 178 --ERRREQKVQQGLTTKGFSSSVYEMIKDEVVPQP 210 (221)
T ss_dssp --HHHHHHHHHHHHHHTTCCHHHHHHHTTC-----
T ss_pred --hHHHHHHHHHHHHhCCCCHHHHHHHHHhccchh
Confidence 012256777899999999999999998765443
No 421
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=27.80 E-value=1.1e+02 Score=31.41 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=51.2
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006172 523 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS 601 (658)
Q Consensus 523 ~~~l~vLdLFSGiGGlslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~ 601 (658)
+...+|||+=||.|.+...+.+..-.+ .++.+|+ +......+.+....+.. ...+..+|+.+ .+ ..+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~----~~------p~~ 268 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE----TI------PDG 268 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT----CC------CSS
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC----CC------CCC
Confidence 456899999999999999998874333 3577899 77666666655433211 12234556541 11 126
Q ss_pred ccEEEecCCCCCcc
Q 006172 602 IDFVICQNSVPQIP 615 (658)
Q Consensus 602 ~DLVIGGpPCQ~FS 615 (658)
+|+|+...-...++
T Consensus 269 ~D~v~~~~vlh~~~ 282 (369)
T 3gwz_A 269 ADVYLIKHVLHDWD 282 (369)
T ss_dssp CSEEEEESCGGGSC
T ss_pred ceEEEhhhhhccCC
Confidence 89888776655554
No 422
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=26.02 E-value=77 Score=25.08 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=24.3
Q ss_pred hHHHHHHHHhcCCChHHH--HHHHHHhCCCCchHHHHHHH
Q 006172 98 HIEKRASLLMMNFSVNEV--DFALDKLGKDAPVYELVDFI 135 (658)
Q Consensus 98 ~~~~~~~lv~MGF~eeev--~~Ai~~~G~d~~i~~L~d~I 135 (658)
..+-+.+++.|||+.+.- .+.++..+-| |...+|.|
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gD--I~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYD--IGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCC--HHHHHHHh
Confidence 566788999999998765 3555554333 56666665
No 423
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=25.97 E-value=48 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF 194 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc 194 (658)
.|+.+|..-|-+++|+..|+.|+
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcC
Confidence 57779999999999999999985
No 424
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=24.64 E-value=1.5e+02 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.1
Q ss_pred CCCcccccCCCCChHHHHH----HHcCCcee-eEEEeeCCHHHHHHHHHHh
Q 006172 524 GGLTMLSVFSGIGGAEVTL----HRLGIKLK-GVISIETSETNRRILKRWW 569 (658)
Q Consensus 524 ~~l~vLdLFSGiGGlslGL----~~aGi~~k-~vvavEid~~a~~t~k~~~ 569 (658)
.+.+|||+=||.|.++..+ ...+-.+. .++++|+++...+..+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~ 102 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV 102 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH
Confidence 4578999999999776432 22211222 2489999999877766543
No 425
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=23.69 E-value=47 Score=33.17 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=36.4
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEe
Q 006172 539 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC 607 (658)
Q Consensus 539 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG 607 (658)
...|.+.|.+ |+.++.++.... .........+..||++ .+.+++++.++|.+|++|-
T Consensus 28 a~~la~~Ga~---Vv~~~~~~~~~~-------~~~~~~~~~~~~Dv~~--~~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 28 AMQFAELGAE---VVALGLDADGVH-------APRHPRIRREELDITD--SQRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHTTCE---EEEEESSTTSTT-------SCCCTTEEEEECCTTC--HHHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHh-------hhhcCCeEEEEecCCC--HHHHHHHHHhcCCCCEEEE
Confidence 5667799986 345677665321 1112222345678875 4668888888999999984
No 426
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=23.11 E-value=80 Score=31.51 Aligned_cols=65 Identities=15% Similarity=-0.022 Sum_probs=37.0
Q ss_pred HHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEecC
Q 006172 539 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 609 (658)
Q Consensus 539 slGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~----l~~~~g~~DLVIGGp 609 (658)
...|-+.|.+ |+.++.++........-.... ....+.+..||++- +.++. ...++|.+|++|-..
T Consensus 26 a~~la~~Ga~---Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~--~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 26 AEGLAAAGAR---VILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDE--LAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHHHTTCE---EEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCH--HHHHHHHHHHHHTTCCCCEEEECC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCH--HHHHHHHHHHHHHCCCCcEEEECC
Confidence 5667789986 455678776543322222222 12233456788754 33433 334689999998543
No 427
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.45 E-value=78 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=30.9
Q ss_pred hhhhhccCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHHhh
Q 006172 15 LRSSFIGMGFS---PSLVDKVIEEKGQDNVDLLLETLIEYNA 53 (658)
Q Consensus 15 l~~~fi~MGF~---~e~V~KAIqe~Ge~d~d~iLE~LLty~a 53 (658)
-+.+|..| || .+.|.++++.++. |.|.-++.||..+.
T Consensus 12 ~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 12 DLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSC
T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcC
Confidence 55788888 74 7899999999987 99999999998554
No 428
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=21.62 E-value=19 Score=34.94 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhh---CCCCChhhh
Q 006172 172 EITLQLLEMGFSENQVSLAIEKF---GSKTPISEL 203 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rc---G~da~i~eL 203 (658)
+-...|+.+||++.||..|+.++ .++.++++|
T Consensus 148 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~l 182 (191)
T 1ixr_A 148 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDL 182 (191)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 34458999999999999999987 334455544
No 429
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=21.34 E-value=1.3e+02 Score=28.83 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----hhhccCCccEEEecC
Q 006172 538 AEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----LIHKLGSIDFVICQN 609 (658)
Q Consensus 538 lslGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~----l~~~~g~~DLVIGGp 609 (658)
+...|.+.|.++ +.+..+......++..-...+.....++..|+++.. .+.. +...++.+|+||-..
T Consensus 25 ia~~l~~~G~~V---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 25 IARSLHEAGARL---IFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA--EIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp HHHHHHHTTCEE---EEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH--HHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHCCCEE---EEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH--HHHHHHHHHHHHhCCeeEEEEcc
Confidence 345667889863 334555443333333222222112345667887653 3333 334568999998654
No 430
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=20.51 E-value=1.2e+02 Score=28.99 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHcCCceeeEEEeeCCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh----hccCCccEEEec
Q 006172 540 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI----HKLGSIDFVICQ 608 (658)
Q Consensus 540 lGL~~aGi~~k~vvavEid~~a~~t~k~~~~~~n~~g~l~~~~DI~~Lt~~~Ie~l~----~~~g~~DLVIGG 608 (658)
..|.+.|.+ |+.++.++.....+.............++..|+..-+.+.+..++ ..++.+|+||-.
T Consensus 30 ~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~n 99 (252)
T 3f1l_A 30 MTYARYGAT---VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHN 99 (252)
T ss_dssp HHHHHTTCE---EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCSEEEEC
T ss_pred HHHHHCCCE---EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 445678985 344667765544333322221111233456787433444444333 457899999854
No 431
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=20.18 E-value=22 Score=35.21 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=0.0
Q ss_pred hhHHHHHhcCCCHHHHHHHHHhhCCCC
Q 006172 172 EITLQLLEMGFSENQVSLAIEKFGSKT 198 (658)
Q Consensus 172 ~k~~~L~~MGf~e~Eas~AI~rcG~da 198 (658)
+|+..|++|||.++.|..|..++|-+.
T Consensus 179 ~~v~~~~~mgf~~~~~~~al~~~~~~~ 205 (216)
T 2pwq_A 179 VIIKKITEMGFSEDQAKNALIKANWNE 205 (216)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHcCCCHHHHHHHHHHcCCch
Confidence 577799999999999999999999873
Done!