Query 006174
Match_columns 658
No_of_seqs 170 out of 318
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 19:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 5.7E-37 1.2E-41 263.0 -1.4 78 149-226 1-78 (79)
2 cd00603 IPT_PCSR IPT domain of 83.8 4.1 8.9E-05 34.7 6.6 68 548-631 1-70 (90)
3 cd01179 IPT_plexin_repeat2 Sec 79.7 6.8 0.00015 33.8 6.6 39 548-587 1-39 (85)
4 PF01833 TIG: IPT/TIG domain; 78.4 4.3 9.4E-05 33.2 4.8 45 548-592 1-45 (85)
5 cd00102 IPT Immunoglobulin-lik 75.3 11 0.00023 31.5 6.4 36 548-584 1-36 (89)
6 cd01180 IPT_plexin_repeat1 Fir 72.8 6 0.00013 34.9 4.5 39 548-586 1-41 (94)
7 smart00429 IPT ig-like, plexin 70.3 7 0.00015 33.2 4.2 38 548-586 2-39 (90)
8 PF10866 DUF2704: Protein of u 69.7 3.9 8.6E-05 40.6 2.9 31 452-482 123-160 (168)
9 PF09099 Qn_am_d_aIII: Quinohe 67.5 6.9 0.00015 34.8 3.7 26 548-573 2-27 (81)
10 cd01181 IPT_plexin_repeat3 Thi 53.2 24 0.00051 31.9 4.6 41 548-588 1-42 (99)
11 PF14901 Jiv90: Cleavage induc 34.1 19 0.0004 33.2 0.9 18 187-204 26-43 (94)
12 cd02849 CGTase_C_term Cgtase ( 32.2 1.4E+02 0.0031 26.1 6.1 77 547-650 2-79 (81)
13 PF05587 Anth_Ig: Anthrax rece 31.2 16 0.00035 34.2 0.0 37 549-585 7-45 (105)
14 cd02969 PRX_like1 Peroxiredoxi 28.3 96 0.0021 29.4 4.7 47 432-478 117-169 (171)
15 PRK00241 nudC NADH pyrophospha 27.2 16 0.00036 38.1 -0.7 37 162-199 92-128 (256)
16 PF10083 DUF2321: Uncharacteri 21.0 36 0.00078 34.0 0.3 33 164-196 2-36 (158)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=5.7e-37 Score=262.99 Aligned_cols=78 Identities=65% Similarity=1.133 Sum_probs=63.2
Q ss_pred ceeecCCcchhcccchhhccccchhhhccccEeeeCCchhhHhHhhccCccCccccCccchHHHHHhhhhhhhcCCCC
Q 006174 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 (658)
Q Consensus 149 ~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~~~ 226 (658)
+||||||++||+.+|.||+||||||.|+||++|+++|..+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=83.78 E-value=4.1 Score=34.68 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=48.7
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhhhhhhcccccccccccCcceeeeeeccCCCCCCc--
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGR-- 625 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e~~~~~~~~~~~~~~~dei~~~~f~~s~P~~~Gr-- 625 (658)
|+|..++|..-.....+.++++|.||.....++-|.+.|. .+... .-. .+ .+.|..|...+.
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~--~C~~~----~~~-----~~-----~i~C~~p~~~~~~~ 64 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGV--PCKVL----NVS-----ST-----EIVCRTPAAATPGE 64 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCE--ECcEE----ecC-----CC-----EEEEECCCCCCCCc
Confidence 7899999999999999999999999999876777777553 11111 101 22 355668887765
Q ss_pred cEEEEe
Q 006174 626 GFIEVL 631 (658)
Q Consensus 626 ~FIEVE 631 (658)
.-|+|.
T Consensus 65 ~~v~v~ 70 (90)
T cd00603 65 GPVEVT 70 (90)
T ss_pred EeEEEE
Confidence 666666
No 3
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=79.70 E-value=6.8 Score=33.76 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=33.8
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCc
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGK 587 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~Gk 587 (658)
|.|.++.|..-+....+.+.++|.||... .++.|.+.|.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~-~~~~V~ig~~ 39 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAG-SSVRVTVGGQ 39 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCC-CeEEEEECCe
Confidence 78999999999999999999999999764 4577877774
No 4
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=78.41 E-value=4.3 Score=33.23 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=39.0
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhh
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQE 592 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e 592 (658)
|.|.+|.|-.-.......+.|.|.||......+.|.+.+......
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~ 45 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVI 45 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEE
Confidence 789999999888888999999999998888888898888765544
No 5
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=75.35 E-value=11 Score=31.51 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=31.6
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEee
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAV 584 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~ 584 (658)
|+|..|.|..-.....+.+.|+|.||.... ++-|.|
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~-~~~v~~ 36 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGS-NLRVTF 36 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCC-cEEEEE
Confidence 789999999999989999999999997764 677777
No 6
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=72.78 E-value=6 Score=34.91 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=33.3
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCC--ceEEEeecC
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSA--TRLLCAVEG 586 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~--trlLcs~~G 586 (658)
|+|.+|+|.--+....+.++++|.||.... .++-+.+.|
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~ 41 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGG 41 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECC
Confidence 789999999999999999999999999884 455555555
No 7
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=70.29 E-value=7 Score=33.17 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=32.7
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecC
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEG 586 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~G 586 (658)
|+|..+.|........+.++|+|.||.. ...+.+.+..
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~-~~~~~~~~~~ 39 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDS-ISVVFVEVGV 39 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCc-ceEEEEEEEe
Confidence 7999999999998888899999999986 7777777654
No 8
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=69.68 E-value=3.9 Score=40.59 Aligned_cols=31 Identities=29% Similarity=0.671 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCc-------cCcccccCCceeEeee
Q 006174 452 VLRAQILDWLSHSPS-------DMESYIRPGCVILTIY 482 (658)
Q Consensus 452 ~LR~QI~~WLs~~Pt-------dmEgYIRPGCviLTiy 482 (658)
.++.+|++-|.+.=+ .--|||.|.|||+|.-
T Consensus 123 T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf~ 160 (168)
T PF10866_consen 123 TFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTFN 160 (168)
T ss_pred HHHHHHHHHHhhhccccccccccccCccCCCeEEEeee
Confidence 688999999987544 2459999999999963
No 9
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=67.52 E-value=6.9 Score=34.81 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=24.6
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeec
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINL 573 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL 573 (658)
|+|..|+|-.+.+|.++++++-|.||
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L 27 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGL 27 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES-
T ss_pred CeEEEECchhccCCCeEEEEEEecCc
Confidence 79999999999999999999999999
No 10
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=53.18 E-value=24 Score=31.85 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=35.3
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCc-eEEEeecCcc
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSAT-RLLCAVEGKY 588 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~t-rlLcs~~GkY 588 (658)
|.|..|+|..=..+..+.+.|+|.||..-.. ++-+.+.+.+
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~ 42 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVE 42 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCce
Confidence 7899999999999999999999999997754 7777788854
No 11
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=34.11 E-value=19 Score=33.20 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=14.8
Q ss_pred hhhHhHhhccCccCcccc
Q 006174 187 MQRFCQQCSRFHVLQEFD 204 (658)
Q Consensus 187 ~qRFCQQC~rFH~L~eFD 204 (658)
.-|+||+|..+|+-.+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876644
No 12
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=32.16 E-value=1.4e+02 Score=26.14 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=46.0
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhhhhhhcccccccccccCcceeeeeeccCCCC-CCc
Q 006174 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAV-TGR 625 (658)
Q Consensus 547 ~p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e~~~~~~~~~~~~~~~dei~~~~f~~s~P~~-~Gr 625 (658)
-|.|.+|.|.....|. ++.+.|.++.....++ .|.+... ++. -- .+.+ +.|.+|.. .|-
T Consensus 2 ~P~I~~i~P~~g~~G~--~VtI~G~gFg~~~~~V--~~g~~~a--~v~----s~-----sdt~-----I~~~vP~~~aG~ 61 (81)
T cd02849 2 TPLIGHVGPMMGKAGN--TVTISGEGFGSAPGTV--YFGTTAA--TVI----SW-----SDTR-----IVVTVPNVPAGN 61 (81)
T ss_pred CCEEeeEcCCCCCCCC--EEEEEEECCCCCCcEE--EECCEEe--EEE----EE-----CCCE-----EEEEeCCCCCce
Confidence 3799999999888766 5688888888554554 4444221 111 00 1222 34558877 666
Q ss_pred cEEEEeeecccCCCCCcccccccce
Q 006174 626 GFIEVLFFFGWGGGGGLYIALFFPF 650 (658)
Q Consensus 626 ~FIEVE~~~~~~~d~G~~s~~ffP~ 650 (658)
.-|=|+ ..+| -.||.+.|
T Consensus 62 ~~V~V~------~~~G-~~Sn~~~f 79 (81)
T cd02849 62 YDVTVK------TADG-ATSNGYNF 79 (81)
T ss_pred EEEEEE------eCCC-cccCcEee
Confidence 666666 3356 55556654
No 13
>PF05587 Anth_Ig: Anthrax receptor extracellular domain; InterPro: IPR008400 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively extracellular N-terminal half of the anthrax receptor. It is probably part of the Ig superfamily and most closely related to IPR002909 from INTERPRO.; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3N2N_E 1SHT_X 1TZN_o 1SHU_X.
Probab=31.16 E-value=16 Score=34.15 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred eeeEeeeeeEecCCceEEEEEee--ecCCCCceEEEeec
Q 006174 549 KILSVKPIAVPASERAQFFVKGI--NLGRSATRLLCAVE 585 (658)
Q Consensus 549 ~i~~V~PiAv~ag~~~~~~v~G~--NL~~p~trlLcs~~ 585 (658)
+|+.|.|--|=+|++-+++|+|. +.+.....+||+|.
T Consensus 7 Eil~~ePSsvC~ge~f~Vvv~G~GF~~~~~~d~ViC~F~ 45 (105)
T PF05587_consen 7 EILSVEPSSVCVGESFQVVVRGNGFNNARNVDQVICRFK 45 (105)
T ss_dssp ---------------------------------------
T ss_pred eEEEEcCCceECCCceEEEEECccccccCCCCeEEEEEE
Confidence 78999999999999999999887 55555677999984
No 14
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=28.29 E-value=96 Score=29.35 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.3
Q ss_pred cccceEEEE-ecCCCCCC-----ccHHHHHHHHHHhcCCCccCcccccCCcee
Q 006174 432 SRTDRIVFK-LFGKEPND-----FPLVLRAQILDWLSHSPSDMESYIRPGCVI 478 (658)
Q Consensus 432 ~rTgRIsFK-LF~k~P~d-----fP~~LR~QI~~WLs~~PtdmEgYIRPGCvi 478 (658)
++.|||++. -++-.... =...|++.|-.||+..+...|--+=+||.+
T Consensus 117 d~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 117 DPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred CCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 567899864 11111111 125799999999999999999999999974
No 15
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=27.22 E-value=16 Score=38.09 Aligned_cols=37 Identities=14% Similarity=0.352 Sum_probs=28.6
Q ss_pred cchhhccccchhhhccccEeeeCCchhhHhHhhccCcc
Q 006174 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHV 199 (658)
Q Consensus 162 ~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQC~rFH~ 199 (658)
+-.+|++||-|..+-....+.. +...|.|..|++.|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~~-~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPSK-TEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeecC-CceeEECCCCCCEEC
Confidence 4579999999999888766554 455688999997653
No 16
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.04 E-value=36 Score=34.01 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=26.4
Q ss_pred hhhccccchhh-hccccEeeeC-CchhhHhHhhcc
Q 006174 164 DYHRRHKVCEM-HSKASRALVG-NVMQRFCQQCSR 196 (658)
Q Consensus 164 ~Y~rR~rVCe~-H~kA~~V~v~-G~~qRFCQQC~r 196 (658)
.||+-..||.- |.-...+.-+ -..+-||.|||.
T Consensus 2 g~y~~aqiC~NGH~~t~~~~~~p~~~~~fC~kCG~ 36 (158)
T PF10083_consen 2 GTYRIAQICLNGHVITDSYDKNPELREKFCSKCGA 36 (158)
T ss_pred cchhHHHHccCccccccccccCchHHHHHHHHhhH
Confidence 47788889976 8777777766 668899999995
Done!