Query 006174
Match_columns 658
No_of_seqs 170 out of 318
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 2E-40 6.7E-45 290.7 -0.7 89 142-230 3-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 3.1E-39 1.1E-43 280.3 -0.8 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 5.9E-30 2E-34 208.6 0.8 59 146-204 2-60 (60)
4 1uad_C RSEC5, exocyst complex 66.8 12 0.0004 32.5 6.4 39 547-587 7-46 (99)
5 4hw6_A Hypothetical protein, I 47.7 28 0.00095 36.5 6.5 70 544-631 15-85 (433)
6 3tc9_A Hypothetical hydrolase; 34.2 66 0.0023 33.5 6.7 66 548-631 18-83 (430)
7 2cxk_A Camta1, calmodulin bind 31.7 37 0.0013 29.4 3.7 45 547-592 6-50 (95)
8 3hrp_A Uncharacterized protein 25.4 1.1E+02 0.0037 31.4 6.5 41 545-587 14-55 (409)
9 3fau_A NEDD4-binding protein 2 20.7 39 0.0013 27.9 1.6 31 450-481 51-81 (82)
10 1pby_A Quinohemoprotein amine 20.1 76 0.0026 35.2 4.2 31 545-575 273-303 (489)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2e-40 Score=290.68 Aligned_cols=89 Identities=64% Similarity=1.084 Sum_probs=80.4
Q ss_pred CCCCCCCceeecCCcchhcccchhhccccchhhhccccEeeeCCchhhHhHhhccCccCccccCccchHHHHHhhhhhhh
Q 006174 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (658)
Q Consensus 142 ~~~~~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RR 221 (658)
+++++.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcC
Q 006174 222 RKTNPDAVA 230 (658)
Q Consensus 222 Rk~~~~~~~ 230 (658)
||++++...
T Consensus 83 Rk~~~~~~~ 91 (94)
T 1ul4_A 83 RKSSGESGP 91 (94)
T ss_dssp CSCCCC---
T ss_pred ccCCCCcCC
Confidence 999998764
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.1e-39 Score=280.27 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.4
Q ss_pred CCCceeecCCcchhcccchhhccccchhhhccccEeeeCCchhhHhHhhccCccCccccCccchHHHHHhhhhhhhcCCC
Q 006174 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (658)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRRk~~ 225 (658)
+.++||||||++||+.+|.||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 006174 226 PDA 228 (658)
Q Consensus 226 ~~~ 228 (658)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.95 E-value=5.9e-30 Score=208.58 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeecCCcchhcccchhhccccchhhhccccEeeeCCchhhHhHhhccCccCcccc
Q 006174 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (658)
Q Consensus 146 ~~~~CqV~GC~~dLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQC~rFH~L~eFD 204 (658)
+.++|||+||++||+.+|.|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=66.82 E-value=12 Score=32.45 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.3
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeecCCCCceE-EEeecCc
Q 006174 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRL-LCAVEGK 587 (658)
Q Consensus 547 ~p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trl-Lcs~~Gk 587 (658)
.|+|..++|..-..| +.++++|.||......| -+...|.
T Consensus 7 ~P~It~i~P~~Gp~G--T~vTI~G~nlg~~~sdv~~V~vgg~ 46 (99)
T 1uad_C 7 PPLVTGISPNEGIPW--TKVTIRGENLGTGPTDLIGLTICGH 46 (99)
T ss_dssp CCEEEEEESSEESTT--CEEEEEEECSCSSGGGEEEEEETTE
T ss_pred CCEEEEEECCCcCCC--CEEEEEEEeCCCCcccceEEEECCE
Confidence 579999999988664 99999999998886665 4777773
No 5
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=47.67 E-value=28 Score=36.48 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCCCc-eeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhhhhhhcccccccccccCcceeeeeeccCCCC
Q 006174 544 SNNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAV 622 (658)
Q Consensus 544 s~~~p-~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e~~~~~~~~~~~~~~~dei~~~~f~~s~P~~ 622 (658)
.|+.| +|..+.|..- +..+++++.|.|+......+-+.|.|+-...- .+. .+.|.| .+|.-
T Consensus 15 ~~~~p~~i~~~~P~~g--~~~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~-------~~~----~~~i~~-----~vp~~ 76 (433)
T 4hw6_A 15 NPKEEIVVEKFLPTEG--RKGTRVVVYGRNFGNDVSKVKVTIGGYPAKVI-------NVK----GESLLC-----ICPSK 76 (433)
T ss_dssp CTTSCCEEEEEESSEE--CTTCEEEEEEECCCSCGGGEEEEETTEEEEEE-------EEC----SSEEEE-----ECCTT
T ss_pred CCCCCCEEEEECCCCC--CCCCEEEEEeECCCCCcceeEEEECCEEEEEE-------EeC----CCEEEE-----EeCCC
Confidence 34555 9999999984 66788999999999888899999999433211 121 334554 48887
Q ss_pred CCccEEEEe
Q 006174 623 TGRGFIEVL 631 (658)
Q Consensus 623 ~Gr~FIEVE 631 (658)
.|.|=|+|+
T Consensus 77 ~~~g~~~v~ 85 (433)
T 4hw6_A 77 AYEGDVKVS 85 (433)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 776666664
No 6
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=34.16 E-value=66 Score=33.47 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=46.5
Q ss_pred ceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhhhhhhcccccccccccCcceeeeeeccCCCCCCccE
Q 006174 548 SKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQEATHELLDDVDGFKELDELQCVNFSCSIPAVTGRGF 627 (658)
Q Consensus 548 p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e~~~~~~~~~~~~~~~dei~~~~f~~s~P~~~Gr~F 627 (658)
|.|..+.|..-. ..++|++.|.|+......+-+.+.|+-.. ++ ... .+.|. |.+|...|.|=
T Consensus 18 ~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~--v~-----~~~----~~~i~-----~~vp~~~~~g~ 79 (430)
T 3tc9_A 18 VVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSK--VV-----GAK----GKSLY-----CVVPAKAYDGD 79 (430)
T ss_dssp CEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEEC--EE-----EEC----SSEEE-----EECCTTCTTCC
T ss_pred CEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEE--EE-----EEC----CCEEE-----EEeCCCCCCcc
Confidence 399999999876 57889999999998778899999984222 11 111 23344 55898877665
Q ss_pred EEEe
Q 006174 628 IEVL 631 (658)
Q Consensus 628 IEVE 631 (658)
|+|.
T Consensus 80 ~~v~ 83 (430)
T 3tc9_A 80 IKLS 83 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 7
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=31.67 E-value=37 Score=29.36 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=36.9
Q ss_pred CceeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCccchhh
Q 006174 547 YSKILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGKYMVQE 592 (658)
Q Consensus 547 ~p~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~GkYl~~e 592 (658)
.=.|..++|-....+..+.+.|.|.+|.. +.++-|.|.+.-..+|
T Consensus 6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~-gs~~~~~fG~~~vpa~ 50 (95)
T 2cxk_A 6 SGMVTDYSPEWSYPEGGVKVLITGPWQEA-SNNYSCLFDQISVPAS 50 (95)
T ss_dssp CSCCCEEECSEECTTCCCEEEEESSCCCC-SSCEEEEETTEEEECE
T ss_pred cEEEEEECCCcccCCCCEEEEEEeECCCC-CccEEEEECCEEEeEE
Confidence 34799999999999999999999999965 4588898877544444
No 8
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.45 E-value=1.1e+02 Score=31.39 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCCc-eeeEeeeeeEecCCceEEEEEeeecCCCCceEEEeecCc
Q 006174 545 NNYS-KILSVKPIAVPASERAQFFVKGINLGRSATRLLCAVEGK 587 (658)
Q Consensus 545 ~~~p-~i~~V~PiAv~ag~~~~~~v~G~NL~~p~trlLcs~~Gk 587 (658)
++.| +|..+.|..- +..+++++.|.|+......+.+.+.|.
T Consensus 14 ~~~~~~~~~~~p~~g--~~~~~~~i~g~nfg~~~~~~~v~~~~~ 55 (409)
T 3hrp_A 14 PNQPVTVESFMPVEG--KLREKVIVKGSNFGTDKSKVKVYFVDE 55 (409)
T ss_dssp TTSCCEEEEEECSEE--CTTCEEEEEEECCCSCGGGEEEEEECS
T ss_pred CCCCcEEEEEcCCCC--CCCcEEEEEeEcCCCCccceEEEECCc
Confidence 4455 9999999964 578899999999999989999999983
No 9
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.73 E-value=39 Score=27.85 Aligned_cols=31 Identities=16% Similarity=0.520 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHhcCCCccCcccccCCceeEee
Q 006174 450 PLVLRAQILDWLSHSPSDMESYIRPGCVILTI 481 (658)
Q Consensus 450 P~~LR~QI~~WLs~~PtdmEgYIRPGCviLTi 481 (658)
++.||..|.+||...|-..+. .-|||+.+.+
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 356999999999998865533 5899988764
No 10
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=20.13 E-value=76 Score=35.19 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=28.9
Q ss_pred CCCceeeEeeeeeEecCCceEEEEEeeecCC
Q 006174 545 NNYSKILSVKPIAVPASERAQFFVKGINLGR 575 (658)
Q Consensus 545 ~~~p~i~~V~PiAv~ag~~~~~~v~G~NL~~ 575 (658)
.-.|+|+.|.|-++.+|.+++++|-|.+|..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 4467999999999999999999999999997
Done!