Query 006176
Match_columns 658
No_of_seqs 383 out of 2459
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 19:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02730 carot_isom carotene 100.0 1.5E-60 3.2E-65 528.8 54.0 493 158-652 1-493 (493)
2 TIGR02734 crtI_fam phytoene de 100.0 4.3E-53 9.3E-58 471.3 52.1 478 160-655 1-496 (502)
3 KOG4254 Phytoene desaturase [C 100.0 2.9E-54 6.3E-59 435.7 31.7 488 155-652 12-547 (561)
4 TIGR02733 desat_CrtD C-3',4' d 100.0 5.1E-52 1.1E-56 461.3 52.0 474 158-650 2-491 (492)
5 COG1233 Phytoene dehydrogenase 100.0 7.4E-47 1.6E-51 416.0 38.5 470 156-652 2-484 (487)
6 PLN02612 phytoene desaturase 100.0 3.4E-32 7.4E-37 304.6 45.1 441 155-653 91-550 (567)
7 PLN02487 zeta-carotene desatur 100.0 4.4E-31 9.4E-36 292.0 42.5 476 131-652 46-554 (569)
8 PRK07233 hypothetical protein; 100.0 4.9E-31 1.1E-35 289.2 41.7 420 159-652 1-432 (434)
9 TIGR02732 zeta_caro_desat caro 100.0 3E-30 6.5E-35 283.6 37.7 443 159-648 1-474 (474)
10 PRK11883 protoporphyrinogen ox 100.0 7.4E-30 1.6E-34 281.3 33.5 423 158-649 1-450 (451)
11 TIGR00562 proto_IX_ox protopor 100.0 6.2E-30 1.3E-34 282.7 32.7 423 157-651 2-460 (462)
12 PRK12416 protoporphyrinogen ox 100.0 3.1E-29 6.7E-34 276.8 33.3 426 158-651 2-461 (463)
13 TIGR02731 phytoene_desat phyto 100.0 4.7E-28 1E-32 266.7 40.7 425 159-648 1-453 (453)
14 COG1232 HemY Protoporphyrinoge 100.0 8.2E-28 1.8E-32 255.2 29.7 413 159-648 2-443 (444)
15 PLN02576 protoporphyrinogen ox 100.0 2.9E-27 6.2E-32 263.6 35.0 427 155-652 10-488 (496)
16 PLN02268 probable polyamine ox 100.0 2.1E-27 4.5E-32 260.3 32.6 418 158-651 1-434 (435)
17 PRK07208 hypothetical protein; 100.0 2.9E-27 6.2E-32 262.4 31.6 424 156-651 3-461 (479)
18 PLN02676 polyamine oxidase 100.0 1.8E-26 4E-31 253.8 36.3 431 155-653 24-475 (487)
19 PLN02529 lysine-specific histo 100.0 8.6E-26 1.9E-30 254.5 37.7 416 156-652 159-599 (738)
20 PLN02568 polyamine oxidase 100.0 9.4E-26 2E-30 249.8 35.3 447 156-652 4-536 (539)
21 TIGR03467 HpnE squalene-associ 100.0 1.3E-25 2.8E-30 245.0 35.0 403 171-649 1-419 (419)
22 PLN02328 lysine-specific histo 99.9 4.1E-25 8.8E-30 249.9 37.1 420 155-653 236-681 (808)
23 PF01593 Amino_oxidase: Flavin 99.9 2.6E-26 5.5E-31 250.9 25.4 227 392-648 215-450 (450)
24 PLN03000 amine oxidase 99.9 1.8E-24 3.8E-29 244.3 37.5 421 156-652 183-624 (881)
25 COG1231 Monoamine oxidase [Ami 99.9 2.2E-24 4.8E-29 223.2 29.1 428 155-651 5-447 (450)
26 PLN02976 amine oxidase 99.9 2.4E-23 5.2E-28 240.1 40.4 452 154-653 690-1188(1713)
27 KOG0029 Amine oxidase [Seconda 99.9 2.2E-23 4.7E-28 226.9 30.3 432 155-652 13-460 (501)
28 KOG0685 Flavin-containing amin 99.9 5.7E-22 1.2E-26 204.9 25.8 430 156-652 20-492 (498)
29 COG3349 Uncharacterized conser 99.9 2.5E-21 5.4E-26 204.6 21.4 438 158-653 1-465 (485)
30 COG3380 Predicted NAD/FAD-depe 99.8 3.5E-20 7.6E-25 177.8 16.3 326 158-651 2-331 (331)
31 PTZ00363 rab-GDP dissociation 99.8 6.6E-18 1.4E-22 182.3 30.6 325 156-535 3-360 (443)
32 KOG1276 Protoporphyrinogen oxi 99.8 1.1E-17 2.3E-22 170.5 23.6 432 155-648 9-490 (491)
33 PF01266 DAO: FAD dependent ox 99.7 3.9E-16 8.6E-21 166.1 24.0 217 376-646 134-358 (358)
34 COG2907 Predicted NAD/FAD-bind 99.7 4.3E-16 9.2E-21 154.5 20.9 274 155-470 6-297 (447)
35 TIGR03329 Phn_aa_oxid putative 99.7 2.7E-14 5.9E-19 157.4 26.6 65 376-443 170-237 (460)
36 PRK13977 myosin-cross-reactive 99.6 1.1E-12 2.4E-17 143.2 36.1 73 154-232 19-97 (576)
37 PRK11259 solA N-methyltryptoph 99.6 1.3E-13 2.8E-18 148.4 27.0 219 377-650 137-360 (376)
38 TIGR01377 soxA_mon sarcosine o 99.6 5.3E-14 1.1E-18 151.6 24.0 65 377-443 133-200 (380)
39 PRK00711 D-amino acid dehydrog 99.6 2E-13 4.4E-18 148.9 27.3 68 376-444 188-258 (416)
40 TIGR01373 soxB sarcosine oxida 99.6 2.2E-13 4.8E-18 148.1 27.1 208 377-649 171-384 (407)
41 PRK12409 D-amino acid dehydrog 99.6 4.1E-12 8.9E-17 138.3 32.1 214 376-650 184-406 (410)
42 KOG2820 FAD-dependent oxidored 99.6 7.5E-13 1.6E-17 131.5 22.3 71 379-451 143-218 (399)
43 PRK01747 mnmC bifunctional tRN 99.5 2.3E-12 4.9E-17 148.4 27.9 66 376-443 395-463 (662)
44 COG2081 Predicted flavoprotein 99.5 5.1E-13 1.1E-17 137.0 17.7 64 377-441 101-165 (408)
45 COG0665 DadA Glycine/D-amino a 99.5 5.3E-12 1.2E-16 136.3 24.9 67 376-444 143-213 (387)
46 COG0644 FixC Dehydrogenases (f 99.5 1.1E-11 2.3E-16 134.2 25.4 65 387-451 96-160 (396)
47 PRK10157 putative oxidoreducta 99.4 3.6E-11 7.9E-16 131.2 25.4 62 387-449 109-170 (428)
48 PRK11101 glpA sn-glycerol-3-ph 99.4 4E-11 8.7E-16 134.6 25.6 68 376-444 137-212 (546)
49 PF03486 HI0933_like: HI0933-l 99.4 4.4E-12 9.5E-17 135.9 15.8 66 377-442 99-165 (409)
50 PF13450 NAD_binding_8: NAD(P) 99.4 1.4E-12 3E-17 102.9 8.2 68 162-232 1-68 (68)
51 KOG2844 Dimethylglycine dehydr 99.4 9.6E-11 2.1E-15 125.7 24.1 70 374-444 172-244 (856)
52 TIGR02032 GG-red-SF geranylger 99.4 4.3E-10 9.4E-15 116.4 29.0 63 387-450 92-155 (295)
53 COG0578 GlpA Glycerol-3-phosph 99.3 7.2E-11 1.6E-15 127.8 20.3 67 377-444 153-226 (532)
54 PRK10015 oxidoreductase; Provi 99.3 7.9E-10 1.7E-14 120.6 27.8 62 387-449 109-170 (429)
55 TIGR01988 Ubi-OHases Ubiquinon 99.3 6.5E-10 1.4E-14 119.9 26.6 63 387-450 107-170 (385)
56 PRK08773 2-octaprenyl-3-methyl 99.3 3.8E-10 8.2E-15 122.1 24.6 63 387-450 114-176 (392)
57 PF00996 GDI: GDP dissociation 99.3 1.5E-10 3.2E-15 123.8 20.6 324 155-534 2-358 (438)
58 COG0579 Predicted dehydrogenas 99.3 5E-11 1.1E-15 126.5 16.3 68 377-444 141-212 (429)
59 COG1635 THI4 Ribulose 1,5-bisp 99.3 5.1E-11 1.1E-15 111.9 14.2 41 157-197 30-70 (262)
60 PLN02697 lycopene epsilon cycl 99.3 1.4E-09 3.1E-14 120.2 27.4 56 387-443 193-248 (529)
61 PRK06847 hypothetical protein; 99.3 4.3E-09 9.3E-14 113.2 29.9 62 387-449 108-169 (375)
62 TIGR00031 UDP-GALP_mutase UDP- 99.3 1.1E-10 2.3E-15 123.6 16.8 58 158-215 2-60 (377)
63 PLN02463 lycopene beta cyclase 99.3 1E-09 2.2E-14 119.5 24.6 55 387-443 115-169 (447)
64 COG0654 UbiH 2-polyprenyl-6-me 99.3 3.2E-09 7E-14 114.6 28.2 64 386-450 104-169 (387)
65 PRK06185 hypothetical protein; 99.3 2.6E-09 5.7E-14 116.2 27.2 64 387-450 109-176 (407)
66 PRK09126 hypothetical protein; 99.2 6.3E-10 1.4E-14 120.4 21.7 62 388-450 112-174 (392)
67 PRK07364 2-octaprenyl-6-methox 99.2 2.3E-09 5E-14 116.9 26.1 63 387-450 122-188 (415)
68 PRK11728 hydroxyglutarate oxid 99.2 1.1E-10 2.4E-15 126.3 15.4 65 377-443 137-204 (393)
69 TIGR01984 UbiH 2-polyprenyl-6- 99.2 2.7E-09 5.9E-14 115.0 25.5 63 387-450 106-169 (382)
70 PTZ00383 malate:quinone oxidor 99.2 1.3E-10 2.7E-15 127.8 14.4 67 377-444 198-274 (497)
71 PRK04176 ribulose-1,5-biphosph 99.2 2.3E-10 5E-15 115.6 15.2 59 387-445 105-175 (257)
72 TIGR00292 thiazole biosynthesi 99.2 3.4E-10 7.4E-15 113.9 16.2 61 387-447 101-174 (254)
73 PRK08020 ubiF 2-octaprenyl-3-m 99.2 6.1E-09 1.3E-13 112.7 26.5 63 387-450 113-176 (391)
74 TIGR02028 ChlP geranylgeranyl 99.2 4.9E-09 1.1E-13 113.4 25.5 36 158-193 1-36 (398)
75 PRK07608 ubiquinone biosynthes 99.2 8E-09 1.7E-13 111.6 26.3 62 387-450 112-174 (388)
76 PRK07333 2-octaprenyl-6-methox 99.2 2.6E-09 5.7E-14 116.0 22.3 64 386-450 111-174 (403)
77 TIGR03364 HpnW_proposed FAD de 99.2 2.6E-10 5.5E-15 122.2 14.2 61 377-443 133-197 (365)
78 PRK06481 fumarate reductase fl 99.2 1.4E-09 2.9E-14 121.3 20.1 58 386-443 190-251 (506)
79 PRK08013 oxidoreductase; Provi 99.2 7.2E-09 1.6E-13 112.4 25.2 63 387-450 112-175 (400)
80 COG0493 GltD NADPH-dependent g 99.2 5.7E-11 1.2E-15 128.4 8.5 117 107-236 74-190 (457)
81 PRK05714 2-octaprenyl-3-methyl 99.2 8.6E-09 1.9E-13 112.1 25.6 64 387-451 113-176 (405)
82 TIGR02352 thiamin_ThiO glycine 99.2 4.4E-09 9.5E-14 111.2 22.6 208 376-649 124-335 (337)
83 PF01946 Thi4: Thi4 family; PD 99.2 3.3E-10 7.3E-15 107.4 12.2 41 157-197 17-57 (230)
84 PRK07045 putative monooxygenas 99.2 1.2E-08 2.6E-13 110.3 26.2 63 387-449 107-171 (388)
85 TIGR02023 BchP-ChlP geranylger 99.2 1.7E-08 3.7E-13 109.1 27.3 62 387-450 93-162 (388)
86 PRK08244 hypothetical protein; 99.2 1.3E-08 2.9E-13 113.4 27.2 63 387-450 101-166 (493)
87 PRK07494 2-octaprenyl-6-methox 99.2 5.4E-09 1.2E-13 113.0 23.3 63 387-450 112-174 (388)
88 KOG2853 Possible oxidoreductas 99.1 4.1E-09 8.8E-14 104.9 19.4 78 552-649 404-481 (509)
89 PRK12845 3-ketosteroid-delta-1 99.1 3.1E-09 6.8E-14 119.3 21.3 63 381-444 213-279 (564)
90 PLN00093 geranylgeranyl diphos 99.1 1.7E-08 3.6E-13 110.5 26.5 37 154-190 36-72 (450)
91 PRK08274 tricarballylate dehyd 99.1 1.6E-09 3.5E-14 119.9 18.4 62 382-443 127-192 (466)
92 PRK12779 putative bifunctional 99.1 5.7E-11 1.2E-15 139.8 7.1 93 107-203 252-351 (944)
93 PF00890 FAD_binding_2: FAD bi 99.1 1.9E-09 4E-14 117.8 18.5 61 384-444 139-204 (417)
94 PRK07588 hypothetical protein; 99.1 9.7E-09 2.1E-13 111.1 23.8 61 387-449 104-164 (391)
95 PRK05732 2-octaprenyl-6-methox 99.1 1.6E-08 3.4E-13 109.6 24.8 62 388-450 114-176 (395)
96 PRK08850 2-octaprenyl-6-methox 99.1 1.5E-08 3.3E-13 110.1 24.7 62 388-450 113-175 (405)
97 PLN02464 glycerol-3-phosphate 99.1 5.3E-10 1.2E-14 127.0 13.2 59 386-444 232-297 (627)
98 PRK06183 mhpA 3-(3-hydroxyphen 99.1 3.7E-08 8E-13 111.0 27.5 63 387-450 114-181 (538)
99 PRK12769 putative oxidoreducta 99.1 1.9E-10 4.1E-15 132.1 8.1 90 107-197 278-367 (654)
100 TIGR01790 carotene-cycl lycope 99.1 3.3E-08 7.1E-13 106.8 25.0 56 387-443 86-141 (388)
101 PRK08849 2-octaprenyl-3-methyl 99.1 5.1E-08 1.1E-12 105.2 25.9 62 388-450 112-174 (384)
102 PRK12809 putative oxidoreducta 99.1 2.1E-10 4.6E-15 131.2 7.8 96 107-204 261-356 (639)
103 TIGR01320 mal_quin_oxido malat 99.1 4.5E-09 9.8E-14 115.9 17.4 68 376-444 165-241 (483)
104 PRK12266 glpD glycerol-3-phosp 99.0 2.1E-09 4.6E-14 119.8 14.9 58 386-444 155-217 (508)
105 PRK05257 malate:quinone oxidor 99.0 5.4E-09 1.2E-13 115.4 17.8 67 377-444 171-247 (494)
106 COG2509 Uncharacterized FAD-de 99.0 2.9E-08 6.3E-13 103.4 21.7 57 386-442 173-229 (486)
107 PRK12842 putative succinate de 99.0 1.2E-08 2.6E-13 115.5 20.6 58 386-443 214-275 (574)
108 PRK12831 putative oxidoreducta 99.0 2.6E-10 5.6E-15 125.5 6.3 89 107-197 92-180 (464)
109 TIGR01318 gltD_gamma_fam gluta 99.0 4.4E-10 9.4E-15 123.9 8.0 90 107-197 92-181 (467)
110 TIGR03197 MnmC_Cterm tRNA U-34 99.0 1.9E-08 4E-13 108.5 20.3 66 376-443 122-190 (381)
111 PRK12775 putative trifunctiona 99.0 3.7E-10 7.9E-15 134.3 7.5 88 107-197 383-470 (1006)
112 PRK06753 hypothetical protein; 99.0 1.6E-07 3.5E-12 100.9 27.3 62 387-451 99-160 (373)
113 TIGR01813 flavo_cyto_c flavocy 99.0 7.2E-09 1.6E-13 113.9 17.1 59 386-444 130-193 (439)
114 PRK11445 putative oxidoreducta 99.0 4.2E-07 9.1E-12 96.8 29.7 57 392-450 105-164 (351)
115 PRK07121 hypothetical protein; 99.0 1.3E-08 2.9E-13 113.3 19.0 60 384-443 175-239 (492)
116 PRK13339 malate:quinone oxidor 99.0 4.5E-09 9.7E-14 115.3 14.7 67 377-444 172-248 (497)
117 COG0562 Glf UDP-galactopyranos 99.0 4.1E-09 8.8E-14 104.7 12.9 230 157-443 1-240 (374)
118 PRK08243 4-hydroxybenzoate 3-m 99.0 9.3E-08 2E-12 103.5 24.7 64 387-451 104-171 (392)
119 PRK08132 FAD-dependent oxidore 99.0 3.5E-07 7.7E-12 103.3 29.9 63 388-451 127-193 (547)
120 PRK13369 glycerol-3-phosphate 99.0 3.2E-09 7E-14 118.3 12.6 58 386-444 155-216 (502)
121 PRK06996 hypothetical protein; 99.0 1.6E-07 3.5E-12 101.8 24.5 63 387-450 116-182 (398)
122 PRK06617 2-octaprenyl-6-methox 98.9 3.5E-07 7.7E-12 98.3 26.8 63 387-451 105-168 (374)
123 PRK08163 salicylate hydroxylas 98.9 2.9E-08 6.3E-13 107.6 18.2 62 387-449 110-172 (396)
124 PLN02661 Putative thiazole syn 98.9 4.1E-08 8.8E-13 101.7 18.2 40 156-195 91-131 (357)
125 KOG2852 Possible oxidoreductas 98.9 4.9E-08 1.1E-12 95.4 17.4 62 387-451 148-214 (380)
126 PRK06134 putative FAD-binding 98.9 5.6E-08 1.2E-12 110.2 20.8 58 386-443 217-278 (581)
127 PLN02985 squalene monooxygenas 98.9 9.5E-07 2.1E-11 98.4 29.8 64 387-451 148-216 (514)
128 PRK07190 hypothetical protein; 98.9 1.4E-08 3E-13 112.4 15.2 63 387-450 110-172 (487)
129 KOG2415 Electron transfer flav 98.9 1.1E-07 2.4E-12 97.3 20.0 59 385-443 182-256 (621)
130 TIGR01316 gltA glutamate synth 98.9 1.3E-09 2.7E-14 119.8 6.6 91 107-197 80-173 (449)
131 PRK06452 sdhA succinate dehydr 98.9 2.6E-08 5.6E-13 112.4 17.3 58 386-443 136-198 (566)
132 PRK12844 3-ketosteroid-delta-1 98.9 3.6E-08 7.8E-13 111.0 18.3 59 386-444 208-270 (557)
133 PRK06834 hypothetical protein; 98.9 1.3E-08 2.9E-13 112.7 14.6 63 387-450 101-163 (488)
134 TIGR01989 COQ6 Ubiquinone bios 98.9 1.8E-07 3.8E-12 102.7 23.2 63 387-450 118-190 (437)
135 PRK07538 hypothetical protein; 98.9 9.4E-07 2E-11 96.3 28.8 64 387-451 103-173 (413)
136 PRK05192 tRNA uridine 5-carbox 98.9 9.3E-09 2E-13 113.9 12.9 56 387-443 101-157 (618)
137 PRK06184 hypothetical protein; 98.9 2.6E-08 5.6E-13 111.4 16.7 63 387-450 110-175 (502)
138 PRK12835 3-ketosteroid-delta-1 98.9 3.7E-08 7.9E-13 111.4 17.7 59 385-443 212-275 (584)
139 PF01134 GIDA: Glucose inhibit 98.9 1.3E-08 2.8E-13 107.1 12.9 55 387-442 96-151 (392)
140 PRK06175 L-aspartate oxidase; 98.9 4.2E-08 9E-13 107.2 17.4 58 386-443 128-189 (433)
141 PF05834 Lycopene_cycl: Lycope 98.9 4.8E-07 1E-11 97.1 25.2 55 387-443 88-142 (374)
142 TIGR01812 sdhA_frdA_Gneg succi 98.9 5E-08 1.1E-12 110.6 18.5 58 386-443 129-191 (566)
143 KOG0399 Glutamate synthase [Am 98.9 2.2E-09 4.7E-14 120.2 7.0 97 107-207 1738-1834(2142)
144 TIGR03378 glycerol3P_GlpB glyc 98.9 4.4E-08 9.5E-13 104.3 16.7 57 386-442 263-321 (419)
145 PRK07573 sdhA succinate dehydr 98.9 3.5E-08 7.6E-13 112.6 17.1 55 389-443 173-232 (640)
146 PRK12778 putative bifunctional 98.9 1.7E-09 3.8E-14 126.2 6.7 91 107-197 381-471 (752)
147 PRK07236 hypothetical protein; 98.9 7E-08 1.5E-12 104.2 18.3 49 400-449 112-160 (386)
148 TIGR00275 flavoprotein, HI0933 98.9 4.1E-08 8.8E-13 106.2 16.3 58 384-443 103-160 (400)
149 PRK12843 putative FAD-binding 98.9 1.3E-07 2.8E-12 107.1 20.4 59 386-444 221-283 (578)
150 PRK12834 putative FAD-binding 98.9 5.7E-08 1.2E-12 109.5 17.4 42 156-197 3-46 (549)
151 TIGR03315 Se_ygfK putative sel 98.9 2.7E-09 5.8E-14 124.8 6.6 88 107-197 489-577 (1012)
152 PRK09078 sdhA succinate dehydr 98.9 1.2E-07 2.6E-12 107.7 19.7 58 386-443 149-212 (598)
153 PRK07843 3-ketosteroid-delta-1 98.9 4.7E-08 1E-12 110.2 16.3 58 386-443 208-269 (557)
154 PF13738 Pyr_redox_3: Pyridine 98.8 1.8E-08 3.8E-13 98.4 11.2 55 387-442 83-137 (203)
155 PRK12837 3-ketosteroid-delta-1 98.8 8.1E-08 1.8E-12 107.3 17.6 58 386-443 173-235 (513)
156 PRK12810 gltD glutamate syntha 98.8 3.4E-09 7.3E-14 117.2 6.1 89 106-197 95-183 (471)
157 PTZ00139 Succinate dehydrogena 98.8 1.5E-07 3.3E-12 107.0 19.5 58 386-443 166-229 (617)
158 PRK06854 adenylylsulfate reduc 98.8 1.7E-07 3.7E-12 106.5 19.7 57 387-443 133-195 (608)
159 PRK05868 hypothetical protein; 98.8 9.2E-08 2E-12 102.6 16.5 52 398-450 116-167 (372)
160 PRK05945 sdhA succinate dehydr 98.8 8.8E-08 1.9E-12 108.5 17.0 58 386-443 135-197 (575)
161 KOG2614 Kynurenine 3-monooxyge 98.8 8.3E-07 1.8E-11 92.0 22.2 36 157-192 2-37 (420)
162 PRK09853 putative selenate red 98.8 7.4E-09 1.6E-13 120.5 8.1 88 107-197 491-579 (1019)
163 PRK07804 L-aspartate oxidase; 98.8 1.5E-07 3.3E-12 105.7 18.4 58 386-443 144-210 (541)
164 TIGR00551 nadB L-aspartate oxi 98.8 1.1E-07 2.5E-12 105.6 17.0 59 386-444 128-190 (488)
165 PLN02927 antheraxanthin epoxid 98.8 6.7E-07 1.5E-11 100.9 23.1 59 387-449 195-254 (668)
166 PRK08958 sdhA succinate dehydr 98.8 2.1E-07 4.6E-12 105.4 19.3 58 386-443 143-206 (588)
167 PF01494 FAD_binding_3: FAD bi 98.8 2.4E-08 5.1E-13 106.1 11.1 65 387-451 112-180 (356)
168 PRK08401 L-aspartate oxidase; 98.8 2.3E-07 5.1E-12 102.4 19.1 57 386-444 120-176 (466)
169 PRK07803 sdhA succinate dehydr 98.8 1.8E-07 3.9E-12 106.8 18.5 58 386-443 138-213 (626)
170 PRK12839 hypothetical protein; 98.8 2E-07 4.3E-12 105.1 18.5 59 386-444 214-277 (572)
171 PRK07057 sdhA succinate dehydr 98.8 3.5E-07 7.5E-12 103.8 20.2 58 386-443 148-211 (591)
172 PRK05249 soluble pyridine nucl 98.8 1.2E-08 2.6E-13 112.9 8.1 57 386-443 216-272 (461)
173 PTZ00367 squalene epoxidase; P 98.8 2.4E-06 5.1E-11 95.9 26.2 36 155-190 31-66 (567)
174 PRK07395 L-aspartate oxidase; 98.8 1.1E-07 2.4E-12 106.7 15.6 58 386-443 134-197 (553)
175 KOG1439 RAB proteins geranylge 98.8 1.6E-06 3.5E-11 88.9 22.3 250 157-439 4-285 (440)
176 TIGR02485 CobZ_N-term precorri 98.8 1.6E-07 3.4E-12 103.0 16.3 63 380-442 117-182 (432)
177 PLN02172 flavin-containing mon 98.8 9.3E-08 2E-12 104.9 14.2 42 156-197 9-50 (461)
178 PRK08275 putative oxidoreducta 98.8 1.4E-07 3.1E-12 106.4 16.1 58 386-443 137-200 (554)
179 PRK06567 putative bifunctional 98.8 6.9E-09 1.5E-13 119.2 5.5 83 107-194 323-420 (1028)
180 PRK06069 sdhA succinate dehydr 98.8 2.5E-07 5.4E-12 105.0 18.0 58 386-443 137-200 (577)
181 PLN00128 Succinate dehydrogena 98.8 2.4E-07 5.1E-12 105.6 17.8 58 386-443 187-250 (635)
182 PRK08626 fumarate reductase fl 98.7 8.9E-08 1.9E-12 109.5 14.2 58 386-443 158-220 (657)
183 PTZ00306 NADH-dependent fumara 98.7 2.5E-07 5.4E-12 112.5 18.7 43 155-197 407-449 (1167)
184 PRK06263 sdhA succinate dehydr 98.7 2.8E-07 6.1E-12 103.8 17.9 58 386-443 134-197 (543)
185 PRK08205 sdhA succinate dehydr 98.7 3E-07 6.5E-12 104.3 18.2 58 386-443 140-206 (583)
186 TIGR01317 GOGAT_sm_gam glutama 98.7 1.5E-08 3.2E-13 112.3 7.2 89 106-197 95-183 (485)
187 PRK08294 phenol 2-monooxygenas 98.7 1.6E-06 3.4E-11 99.1 23.8 64 387-451 142-218 (634)
188 PF12831 FAD_oxidored: FAD dep 98.7 1.1E-08 2.5E-13 111.5 6.1 58 392-450 96-156 (428)
189 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.2E-07 4.7E-12 100.4 15.9 65 387-451 104-171 (390)
190 PRK05329 anaerobic glycerol-3- 98.7 4.8E-08 1E-12 105.2 10.5 57 386-442 259-317 (422)
191 PF06100 Strep_67kDa_ant: Stre 98.7 1.2E-06 2.5E-11 93.6 20.1 70 157-232 2-77 (500)
192 TIGR01292 TRX_reduct thioredox 98.7 2.4E-07 5.2E-12 96.1 14.9 50 392-443 63-112 (300)
193 PRK06475 salicylate hydroxylas 98.7 4.6E-07 1E-11 98.3 17.4 63 387-450 108-174 (400)
194 PRK08071 L-aspartate oxidase; 98.7 3E-07 6.5E-12 102.6 16.2 57 386-443 130-190 (510)
195 PRK06126 hypothetical protein; 98.7 1.2E-07 2.6E-12 107.2 13.1 63 387-450 127-195 (545)
196 PLN02815 L-aspartate oxidase 98.7 3.1E-07 6.7E-12 103.7 16.1 58 386-443 155-222 (594)
197 PRK08641 sdhA succinate dehydr 98.7 5.7E-07 1.2E-11 102.0 18.4 58 386-443 133-200 (589)
198 PRK11749 dihydropyrimidine deh 98.7 1.8E-08 3.9E-13 111.2 5.9 89 107-197 92-180 (457)
199 TIGR02462 pyranose_ox pyranose 98.7 2.6E-07 5.7E-12 102.2 14.9 37 158-194 1-37 (544)
200 PRK09231 fumarate reductase fl 98.7 6.2E-07 1.3E-11 101.6 18.0 58 386-443 133-196 (582)
201 TIGR01811 sdhA_Bsu succinate d 98.7 4.5E-07 9.8E-12 102.9 16.7 57 387-443 130-196 (603)
202 PRK07512 L-aspartate oxidase; 98.7 3.3E-07 7.2E-12 102.3 15.3 58 386-443 136-197 (513)
203 TIGR01176 fum_red_Fp fumarate 98.7 6.7E-07 1.4E-11 101.1 17.9 58 386-443 132-195 (580)
204 KOG1298 Squalene monooxygenase 98.7 1.3E-06 2.9E-11 88.8 17.9 65 386-451 147-216 (509)
205 PRK15317 alkyl hydroperoxide r 98.6 3.9E-07 8.4E-12 102.1 15.1 55 388-443 268-322 (517)
206 TIGR03219 salicylate_mono sali 98.6 2.8E-07 6.1E-12 100.5 13.6 61 387-450 106-166 (414)
207 PRK09077 L-aspartate oxidase; 98.6 1.4E-06 3E-11 97.9 18.5 58 386-443 138-207 (536)
208 TIGR00136 gidA glucose-inhibit 98.6 2.5E-07 5.4E-12 102.5 12.0 56 387-443 97-154 (617)
209 TIGR03140 AhpF alkyl hydropero 98.6 4.7E-07 1E-11 101.4 14.4 54 388-442 269-322 (515)
210 COG0445 GidA Flavin-dependent 98.6 2.5E-07 5.4E-12 98.6 11.2 53 389-442 103-157 (621)
211 COG3075 GlpB Anaerobic glycero 98.6 9.9E-07 2.2E-11 88.1 14.6 56 387-442 259-316 (421)
212 COG0492 TrxB Thioredoxin reduc 98.6 7E-07 1.5E-11 92.1 12.8 54 387-443 62-115 (305)
213 TIGR02061 aprA adenosine phosp 98.6 3.2E-06 6.9E-11 95.6 19.2 57 387-443 127-191 (614)
214 PRK05976 dihydrolipoamide dehy 98.5 9.1E-07 2E-11 98.1 14.4 41 156-197 3-43 (472)
215 TIGR01424 gluta_reduc_2 glutat 98.5 1E-06 2.2E-11 97.0 14.3 40 157-197 2-41 (446)
216 PRK12814 putative NADPH-depend 98.5 8.3E-08 1.8E-12 110.1 5.8 88 107-197 146-233 (652)
217 PRK12771 putative glutamate sy 98.5 1.5E-07 3.2E-12 106.6 7.7 87 107-197 91-177 (564)
218 PRK06467 dihydrolipoamide dehy 98.5 1.8E-06 3.8E-11 95.7 15.6 42 156-197 3-44 (471)
219 PF00732 GMC_oxred_N: GMC oxid 98.5 2.5E-06 5.3E-11 88.6 15.6 65 386-450 192-265 (296)
220 PRK06116 glutathione reductase 98.5 1.5E-06 3.2E-11 95.9 14.1 41 156-197 3-43 (450)
221 PLN02507 glutathione reductase 98.5 1.8E-06 3.9E-11 96.1 14.6 57 386-443 244-300 (499)
222 TIGR01421 gluta_reduc_1 glutat 98.5 2.7E-06 5.8E-11 93.7 15.3 40 157-197 2-41 (450)
223 PRK06416 dihydrolipoamide dehy 98.5 2.4E-06 5.2E-11 94.6 15.0 41 156-197 3-43 (462)
224 COG2072 TrkA Predicted flavopr 98.4 2.8E-06 6.1E-11 92.8 14.3 53 155-207 6-59 (443)
225 COG5044 MRS6 RAB proteins gera 98.4 2.5E-06 5.4E-11 86.6 12.4 247 155-438 4-279 (434)
226 PF04820 Trp_halogenase: Trypt 98.4 2.6E-06 5.5E-11 93.5 13.6 57 386-443 154-211 (454)
227 PRK09897 hypothetical protein; 98.4 4.7E-06 1E-10 92.5 15.7 54 387-441 108-164 (534)
228 PRK13984 putative oxidoreducta 98.4 3E-07 6.4E-12 105.2 6.1 88 107-197 235-323 (604)
229 TIGR03143 AhpF_homolog putativ 98.4 2.3E-06 5.1E-11 96.6 12.8 40 156-196 3-42 (555)
230 PTZ00052 thioredoxin reductase 98.4 4E-07 8.6E-12 101.4 5.9 57 386-443 222-278 (499)
231 KOG1335 Dihydrolipoamide dehyd 98.4 1.1E-06 2.3E-11 89.5 7.9 58 386-443 252-314 (506)
232 COG1249 Lpd Pyruvate/2-oxoglut 98.3 2.7E-06 5.8E-11 92.3 11.4 57 386-443 214-272 (454)
233 PRK13800 putative oxidoreducta 98.3 9.4E-06 2E-10 96.7 17.0 58 386-443 139-205 (897)
234 KOG2404 Fumarate reductase, fl 98.3 1.3E-05 2.9E-10 79.8 14.7 39 159-197 11-49 (477)
235 PRK06327 dihydrolipoamide dehy 98.3 1E-05 2.2E-10 89.8 15.0 42 156-197 3-50 (475)
236 TIGR01810 betA choline dehydro 98.2 1.5E-05 3.4E-10 89.7 14.9 57 389-445 196-257 (532)
237 PF06039 Mqo: Malate:quinone o 98.2 3.4E-05 7.3E-10 81.7 16.1 69 385-455 180-254 (488)
238 KOG0042 Glycerol-3-phosphate d 98.2 5.7E-06 1.2E-10 87.8 9.7 42 156-197 66-107 (680)
239 PF13454 NAD_binding_9: FAD-NA 98.2 3E-05 6.5E-10 72.3 13.7 50 390-441 105-155 (156)
240 TIGR01438 TGR thioredoxin and 98.2 4.9E-06 1.1E-10 92.2 9.6 57 386-443 220-279 (484)
241 PF00070 Pyr_redox: Pyridine n 98.2 2.5E-05 5.5E-10 63.8 11.1 34 159-192 1-34 (80)
242 COG3573 Predicted oxidoreducta 98.2 2.2E-05 4.8E-10 78.6 12.5 41 156-196 4-46 (552)
243 COG1252 Ndh NADH dehydrogenase 98.2 1.4E-05 3E-10 84.8 11.7 53 386-443 209-262 (405)
244 COG0029 NadB Aspartate oxidase 98.1 2.1E-05 4.6E-10 83.4 12.6 62 381-442 127-195 (518)
245 COG1053 SdhA Succinate dehydro 98.1 2.3E-05 5.1E-10 87.5 13.0 43 155-197 4-46 (562)
246 PRK07845 flavoprotein disulfid 98.1 4.4E-05 9.6E-10 84.5 13.9 39 158-197 2-40 (466)
247 PRK06115 dihydrolipoamide dehy 98.0 5.1E-06 1.1E-10 91.9 5.3 41 157-197 3-43 (466)
248 COG2303 BetA Choline dehydroge 98.0 1.2E-05 2.5E-10 90.2 7.3 59 388-446 204-269 (542)
249 TIGR03377 glycerol3P_GlpA glyc 98.0 3.6E-05 7.8E-10 86.4 11.2 67 377-444 117-191 (516)
250 PRK07251 pyridine nucleotide-d 98.0 8.4E-06 1.8E-10 89.6 5.6 56 386-443 198-253 (438)
251 PRK08010 pyridine nucleotide-d 97.9 9.4E-06 2E-10 89.3 5.5 56 386-443 199-254 (441)
252 TIGR01350 lipoamide_DH dihydro 97.9 9.8E-06 2.1E-10 89.7 5.5 57 386-443 211-269 (461)
253 PRK14694 putative mercuric red 97.9 1.2E-05 2.5E-10 89.2 5.8 56 386-443 218-273 (468)
254 COG4716 Myosin-crossreactive a 97.9 0.00012 2.6E-09 74.6 11.6 61 382-442 223-291 (587)
255 PRK06370 mercuric reductase; V 97.9 1.7E-05 3.7E-10 87.8 5.9 57 386-443 212-271 (463)
256 PLN02785 Protein HOTHEAD 97.9 0.00022 4.8E-09 80.6 14.8 36 155-191 53-88 (587)
257 PLN02852 ferredoxin-NADP+ redu 97.8 2.2E-05 4.7E-10 86.3 6.3 42 156-197 25-68 (491)
258 PRK06292 dihydrolipoamide dehy 97.8 1.8E-05 3.9E-10 87.6 5.5 41 156-197 2-42 (460)
259 PRK08255 salicylyl-CoA 5-hydro 97.8 9.3E-05 2E-09 86.7 11.6 52 386-450 97-148 (765)
260 PRK07818 dihydrolipoamide dehy 97.8 2.2E-05 4.7E-10 87.1 5.8 57 386-443 213-273 (466)
261 KOG1399 Flavin-containing mono 97.8 2.1E-05 4.4E-10 85.2 5.2 42 156-197 5-46 (448)
262 PTZ00058 glutathione reductase 97.8 2.7E-05 5.8E-10 87.4 6.1 57 386-443 278-336 (561)
263 TIGR02053 MerA mercuric reduct 97.8 2.2E-05 4.9E-10 86.9 5.3 57 386-443 207-266 (463)
264 PRK09754 phenylpropionate diox 97.8 0.00031 6.8E-09 76.1 13.6 50 392-443 192-241 (396)
265 PRK09564 coenzyme A disulfide 97.8 0.00016 3.5E-09 79.6 11.6 47 396-443 66-115 (444)
266 COG1148 HdrA Heterodisulfide r 97.8 2.9E-05 6.3E-10 81.6 5.0 43 156-198 123-165 (622)
267 KOG2665 Predicted FAD-dependen 97.7 0.00061 1.3E-08 68.1 13.5 59 385-443 195-257 (453)
268 PTZ00153 lipoamide dehydrogena 97.7 7.9E-05 1.7E-09 84.9 8.6 44 154-197 113-157 (659)
269 PRK13748 putative mercuric red 97.7 3.1E-05 6.6E-10 88.0 5.3 56 386-443 310-365 (561)
270 PRK14727 putative mercuric red 97.7 3.7E-05 7.9E-10 85.5 5.7 56 386-443 228-283 (479)
271 PRK04965 NADH:flavorubredoxin 97.7 0.00044 9.6E-09 74.4 13.6 50 392-442 189-238 (377)
272 PRK10262 thioredoxin reductase 97.7 4.7E-05 1E-09 80.0 5.7 42 155-197 4-45 (321)
273 PTZ00318 NADH dehydrogenase-li 97.7 0.00022 4.7E-09 78.0 10.8 51 386-441 228-278 (424)
274 PTZ00188 adrenodoxin reductase 97.7 6.4E-05 1.4E-09 81.5 6.2 42 156-197 38-80 (506)
275 TIGR01423 trypano_reduc trypan 97.6 5.7E-05 1.2E-09 83.7 5.6 58 386-443 231-288 (486)
276 PLN02546 glutathione reductase 97.6 8.2E-05 1.8E-09 83.6 5.9 58 386-443 293-350 (558)
277 TIGR01350 lipoamide_DH dihydro 97.6 0.00079 1.7E-08 74.6 13.6 34 158-191 171-204 (461)
278 COG0446 HcaD Uncharacterized N 97.5 0.0006 1.3E-08 74.0 11.8 51 392-442 184-236 (415)
279 PRK06416 dihydrolipoamide dehy 97.5 0.00098 2.1E-08 73.8 13.3 51 392-443 219-272 (462)
280 PF00743 FMO-like: Flavin-bind 97.5 9.7E-05 2.1E-09 82.4 5.2 40 158-197 2-41 (531)
281 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00012 2.6E-09 78.2 5.2 35 158-192 3-37 (436)
282 TIGR01372 soxA sarcosine oxida 97.5 0.00012 2.6E-09 88.2 5.6 42 156-197 162-203 (985)
283 TIGR01789 lycopene_cycl lycope 97.5 0.00012 2.6E-09 78.4 5.1 36 159-194 1-38 (370)
284 PRK06116 glutathione reductase 97.5 0.0014 3.1E-08 72.2 13.8 52 392-443 214-265 (450)
285 KOG2311 NAD/FAD-utilizing prot 97.5 0.0002 4.3E-09 75.2 6.3 36 155-190 26-61 (679)
286 TIGR01421 gluta_reduc_1 glutat 97.4 0.0015 3.4E-08 71.9 13.3 52 392-443 213-265 (450)
287 PRK05976 dihydrolipoamide dehy 97.4 0.0015 3.2E-08 72.6 13.2 52 392-443 227-281 (472)
288 COG3634 AhpF Alkyl hydroperoxi 97.4 0.00038 8.3E-09 70.3 7.4 57 387-443 267-325 (520)
289 KOG0404 Thioredoxin reductase 97.4 0.0012 2.5E-08 63.0 10.0 54 387-443 71-124 (322)
290 PRK07251 pyridine nucleotide-d 97.4 0.0019 4.2E-08 71.0 13.7 35 158-192 158-192 (438)
291 PRK14989 nitrite reductase sub 97.4 0.0014 3.1E-08 77.2 13.2 51 392-442 193-244 (847)
292 PRK07845 flavoprotein disulfid 97.4 0.002 4.4E-08 71.3 13.8 51 392-443 224-274 (466)
293 KOG1238 Glucose dehydrogenase/ 97.4 0.0027 6E-08 70.1 14.2 39 154-192 54-93 (623)
294 PF07992 Pyr_redox_2: Pyridine 97.4 0.00019 4.2E-09 69.6 4.9 32 159-190 1-32 (201)
295 TIGR02374 nitri_red_nirB nitri 97.4 0.0016 3.4E-08 76.7 13.1 50 392-442 188-237 (785)
296 PRK07818 dihydrolipoamide dehy 97.3 0.0026 5.6E-08 70.5 13.7 34 158-191 173-206 (466)
297 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00022 4.8E-09 76.7 4.8 36 159-194 2-37 (433)
298 PRK14989 nitrite reductase sub 97.3 0.0012 2.6E-08 77.8 11.2 45 396-443 69-113 (847)
299 TIGR03169 Nterm_to_SelD pyridi 97.3 0.00088 1.9E-08 71.7 9.4 46 394-443 62-107 (364)
300 TIGR01424 gluta_reduc_2 glutat 97.3 0.003 6.6E-08 69.6 13.6 50 393-443 214-263 (446)
301 TIGR01423 trypano_reduc trypan 97.3 0.0028 6E-08 70.4 13.2 35 158-192 188-225 (486)
302 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0029 6.3E-08 69.3 13.2 48 392-442 185-232 (427)
303 PRK12770 putative glutamate sy 97.3 0.00041 9E-09 73.9 6.2 42 156-197 17-58 (352)
304 PRK06370 mercuric reductase; V 97.3 0.0039 8.4E-08 69.1 14.0 35 158-192 172-206 (463)
305 TIGR02374 nitri_red_nirB nitri 97.2 0.00094 2E-08 78.6 9.1 45 396-443 64-108 (785)
306 PRK06327 dihydrolipoamide dehy 97.2 0.0039 8.4E-08 69.3 13.5 50 393-443 231-284 (475)
307 PRK02106 choline dehydrogenase 97.2 0.00036 7.8E-09 79.2 5.3 53 397-449 212-268 (560)
308 PRK14694 putative mercuric red 97.2 0.004 8.8E-08 69.0 13.6 32 158-189 179-210 (468)
309 PRK07846 mycothione reductase; 97.2 0.0039 8.4E-08 68.7 13.2 45 398-443 218-262 (451)
310 COG4529 Uncharacterized protei 97.2 0.0042 9.1E-08 66.5 12.7 40 157-196 1-43 (474)
311 PRK06912 acoL dihydrolipoamide 97.2 0.0049 1.1E-07 68.2 13.9 33 158-190 171-203 (458)
312 TIGR02053 MerA mercuric reduct 97.2 0.004 8.6E-08 69.0 12.9 35 158-192 167-201 (463)
313 PRK14727 putative mercuric red 97.2 0.0041 9E-08 69.1 13.0 32 158-189 189-220 (479)
314 TIGR03862 flavo_PP4765 unchara 97.1 0.0092 2E-07 63.5 14.7 64 377-443 76-141 (376)
315 PRK08010 pyridine nucleotide-d 97.1 0.0054 1.2E-07 67.5 13.3 34 158-191 159-192 (441)
316 PRK13512 coenzyme A disulfide 97.1 0.0041 8.9E-08 68.3 12.3 47 392-443 195-241 (438)
317 PRK06115 dihydrolipoamide dehy 97.1 0.0062 1.4E-07 67.5 13.8 34 157-190 174-207 (466)
318 PRK06912 acoL dihydrolipoamide 97.1 0.00053 1.1E-08 75.8 5.1 56 386-443 211-268 (458)
319 PRK09564 coenzyme A disulfide 97.1 0.0055 1.2E-07 67.5 13.1 49 392-442 197-245 (444)
320 PRK13748 putative mercuric red 97.1 0.0054 1.2E-07 69.8 13.4 32 158-189 271-302 (561)
321 TIGR03452 mycothione_red mycot 97.0 0.0083 1.8E-07 66.2 13.4 44 399-443 222-265 (452)
322 PRK04965 NADH:flavorubredoxin 97.0 0.0054 1.2E-07 66.0 11.7 44 396-443 68-111 (377)
323 PF13434 K_oxygenase: L-lysine 96.9 0.00088 1.9E-08 70.7 4.8 35 157-191 2-37 (341)
324 PRK05675 sdhA succinate dehydr 96.9 0.021 4.6E-07 64.8 16.1 58 386-443 126-189 (570)
325 PTZ00058 glutathione reductase 96.9 0.012 2.6E-07 66.3 13.7 35 157-191 237-271 (561)
326 PRK07846 mycothione reductase; 96.9 0.001 2.2E-08 73.4 4.7 38 157-197 1-38 (451)
327 TIGR03452 mycothione_red mycot 96.9 0.0011 2.4E-08 73.1 4.9 38 157-197 2-39 (452)
328 PRK10262 thioredoxin reductase 96.8 0.0084 1.8E-07 62.9 11.2 49 394-442 193-247 (321)
329 KOG4405 GDP dissociation inhib 96.8 0.028 6.1E-07 58.4 14.1 114 324-440 220-342 (547)
330 PLN02546 glutathione reductase 96.8 0.013 2.9E-07 65.9 13.2 35 157-191 252-286 (558)
331 TIGR03140 AhpF alkyl hydropero 96.8 0.0081 1.8E-07 67.4 10.9 44 399-442 401-449 (515)
332 PRK06467 dihydrolipoamide dehy 96.7 0.016 3.4E-07 64.4 12.7 34 158-191 175-208 (471)
333 KOG1800 Ferredoxin/adrenodoxin 96.7 0.0024 5.2E-08 65.7 5.4 42 156-197 19-62 (468)
334 KOG1336 Monodehydroascorbate/f 96.6 0.019 4.1E-07 61.3 11.5 54 390-443 259-313 (478)
335 KOG2960 Protein involved in th 96.5 0.00083 1.8E-08 63.3 0.5 41 157-197 76-118 (328)
336 PRK06292 dihydrolipoamide dehy 96.5 0.03 6.4E-07 62.0 12.8 34 157-190 169-202 (460)
337 TIGR01316 gltA glutamate synth 96.4 0.036 7.9E-07 61.1 13.0 34 157-190 272-305 (449)
338 KOG4716 Thioredoxin reductase 96.4 0.0057 1.2E-07 61.9 5.6 54 154-209 16-70 (503)
339 PTZ00153 lipoamide dehydrogena 96.2 0.046 1E-06 62.7 12.4 34 158-191 313-346 (659)
340 PRK09754 phenylpropionate diox 96.1 0.0062 1.4E-07 66.0 5.1 44 397-443 69-112 (396)
341 COG1206 Gid NAD(FAD)-utilizing 96.0 0.0097 2.1E-07 60.2 5.4 37 158-194 4-40 (439)
342 PRK13512 coenzyme A disulfide 96.0 0.007 1.5E-07 66.5 5.0 35 158-192 2-38 (438)
343 PRK15317 alkyl hydroperoxide r 95.9 0.045 9.8E-07 61.5 10.9 44 399-442 400-448 (517)
344 COG1251 NirB NAD(P)H-nitrite r 95.9 0.022 4.8E-07 63.8 7.6 50 392-442 193-242 (793)
345 PRK11749 dihydropyrimidine deh 95.8 0.067 1.5E-06 59.1 11.6 33 157-189 273-306 (457)
346 TIGR01292 TRX_reduct thioredox 95.8 0.082 1.8E-06 54.5 11.4 33 157-189 141-173 (300)
347 KOG0405 Pyridine nucleotide-di 95.4 0.027 5.8E-07 57.5 5.7 60 383-442 226-286 (478)
348 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.03 6.5E-07 52.1 4.1 32 159-190 1-32 (157)
349 TIGR01470 cysG_Nterm siroheme 94.8 0.61 1.3E-05 45.4 13.2 34 157-190 9-42 (205)
350 PF02737 3HCDH_N: 3-hydroxyacy 94.8 0.035 7.5E-07 52.9 4.3 32 159-190 1-32 (180)
351 TIGR01816 sdhA_forward succina 94.7 0.12 2.5E-06 58.8 9.1 58 386-443 119-181 (565)
352 PF07156 Prenylcys_lyase: Pren 94.7 0.12 2.6E-06 54.9 8.5 111 326-442 69-186 (368)
353 COG3486 IucD Lysine/ornithine 94.6 0.17 3.7E-06 53.1 9.1 36 156-191 4-40 (436)
354 TIGR01372 soxA sarcosine oxida 94.2 0.34 7.4E-06 58.8 12.1 46 396-442 361-410 (985)
355 PF03721 UDPG_MGDP_dh_N: UDP-g 94.1 0.055 1.2E-06 51.8 4.0 33 158-190 1-33 (185)
356 KOG3855 Monooxygenase involved 93.9 0.068 1.5E-06 56.0 4.4 36 155-190 34-73 (481)
357 PRK02705 murD UDP-N-acetylmura 93.7 0.071 1.5E-06 59.0 4.6 34 159-192 2-35 (459)
358 PRK01438 murD UDP-N-acetylmura 93.7 0.085 1.8E-06 58.7 5.2 34 157-190 16-49 (480)
359 PF13434 K_oxygenase: L-lysine 93.7 0.37 8.1E-06 50.9 9.7 36 155-190 188-225 (341)
360 PRK06718 precorrin-2 dehydroge 93.5 2.2 4.9E-05 41.3 14.2 34 156-189 9-42 (202)
361 PF02558 ApbA: Ketopantoate re 93.1 0.14 3E-06 47.1 4.9 31 160-190 1-31 (151)
362 PRK06129 3-hydroxyacyl-CoA deh 92.9 0.11 2.4E-06 54.1 4.4 33 159-191 4-36 (308)
363 PRK07819 3-hydroxybutyryl-CoA 92.7 0.16 3.4E-06 52.4 5.0 34 158-191 6-39 (286)
364 PRK07066 3-hydroxybutyryl-CoA 92.4 0.2 4.4E-06 52.2 5.4 33 158-190 8-40 (321)
365 COG0569 TrkA K+ transport syst 92.1 0.17 3.8E-06 50.0 4.4 34 158-191 1-34 (225)
366 PRK08293 3-hydroxybutyryl-CoA 92.0 0.19 4E-06 51.9 4.6 33 158-190 4-36 (287)
367 PRK06249 2-dehydropantoate 2-r 92.0 0.24 5.1E-06 51.8 5.4 34 157-190 5-38 (313)
368 COG1249 Lpd Pyruvate/2-oxoglut 92.0 0.21 4.5E-06 54.7 5.1 36 157-192 173-208 (454)
369 PRK14106 murD UDP-N-acetylmura 91.9 0.2 4.4E-06 55.2 5.1 34 157-190 5-38 (450)
370 PRK09260 3-hydroxybutyryl-CoA 91.7 0.19 4.1E-06 51.8 4.3 32 159-190 3-34 (288)
371 PF01488 Shikimate_DH: Shikima 91.4 0.33 7.1E-06 43.8 5.0 34 156-189 11-45 (135)
372 PRK07530 3-hydroxybutyryl-CoA 91.4 0.27 5.8E-06 50.8 5.0 33 158-190 5-37 (292)
373 PF01262 AlaDh_PNT_C: Alanine 91.1 0.34 7.5E-06 45.5 5.0 33 157-189 20-52 (168)
374 PRK05249 soluble pyridine nucl 91.0 0.3 6.5E-06 54.0 5.2 36 157-192 175-210 (461)
375 KOG3923 D-aspartate oxidase [A 90.7 0.23 5.1E-06 49.9 3.5 51 387-452 152-202 (342)
376 PRK06035 3-hydroxyacyl-CoA deh 90.6 0.3 6.5E-06 50.5 4.5 33 158-190 4-36 (291)
377 PRK05708 2-dehydropantoate 2-r 90.5 0.33 7.3E-06 50.5 4.8 32 158-189 3-34 (305)
378 KOG1346 Programmed cell death 90.3 0.28 6.1E-06 51.4 3.8 55 387-442 394-448 (659)
379 TIGR02354 thiF_fam2 thiamine b 90.2 0.43 9.3E-06 46.3 4.8 34 157-190 21-55 (200)
380 PF13738 Pyr_redox_3: Pyridine 90.1 0.35 7.6E-06 46.7 4.2 34 157-190 167-200 (203)
381 PRK06522 2-dehydropantoate 2-r 90.0 0.38 8.2E-06 49.9 4.7 31 159-189 2-32 (304)
382 COG1004 Ugd Predicted UDP-gluc 90.0 0.37 8E-06 50.7 4.4 33 158-190 1-33 (414)
383 PRK11064 wecC UDP-N-acetyl-D-m 90.0 0.38 8.3E-06 52.3 4.8 34 158-191 4-37 (415)
384 PF13241 NAD_binding_7: Putati 89.9 0.27 5.8E-06 42.1 2.8 34 156-189 6-39 (103)
385 PRK04148 hypothetical protein; 89.8 0.38 8.2E-06 43.1 3.7 33 158-191 18-50 (134)
386 PRK05808 3-hydroxybutyryl-CoA 89.7 0.37 7.9E-06 49.5 4.2 33 158-190 4-36 (282)
387 cd01080 NAD_bind_m-THF_DH_Cycl 89.7 0.55 1.2E-05 44.1 5.0 34 156-189 43-77 (168)
388 PRK12921 2-dehydropantoate 2-r 89.6 0.4 8.6E-06 49.8 4.5 30 159-188 2-31 (305)
389 PRK08229 2-dehydropantoate 2-r 89.3 0.47 1E-05 50.2 4.8 32 158-189 3-34 (341)
390 PRK06719 precorrin-2 dehydroge 89.3 0.61 1.3E-05 43.3 4.9 33 156-188 12-44 (157)
391 PLN02545 3-hydroxybutyryl-CoA 89.0 0.55 1.2E-05 48.6 4.9 33 158-190 5-37 (295)
392 TIGR00518 alaDH alanine dehydr 89.0 0.55 1.2E-05 50.2 5.0 34 157-190 167-200 (370)
393 TIGR01763 MalateDH_bact malate 88.9 0.6 1.3E-05 48.5 5.1 33 158-190 2-35 (305)
394 PRK14618 NAD(P)H-dependent gly 88.9 0.61 1.3E-05 49.0 5.3 33 158-190 5-37 (328)
395 PF03446 NAD_binding_2: NAD bi 88.9 0.64 1.4E-05 43.4 4.8 33 158-190 2-34 (163)
396 TIGR03169 Nterm_to_SelD pyridi 88.8 1.1 2.3E-05 47.8 7.2 51 387-442 192-242 (364)
397 KOG3851 Sulfide:quinone oxidor 88.6 0.55 1.2E-05 47.7 4.3 38 383-420 233-270 (446)
398 TIGR03026 NDP-sugDHase nucleot 88.5 0.51 1.1E-05 51.4 4.4 33 159-191 2-34 (411)
399 PRK06130 3-hydroxybutyryl-CoA 88.5 0.64 1.4E-05 48.5 5.0 33 158-190 5-37 (311)
400 PLN02507 glutathione reductase 88.4 0.58 1.3E-05 52.3 4.9 35 158-192 204-238 (499)
401 COG0686 Ald Alanine dehydrogen 88.4 0.54 1.2E-05 47.7 4.1 34 156-189 167-200 (371)
402 PRK12831 putative oxidoreducta 88.4 0.63 1.4E-05 51.5 5.1 35 156-190 280-314 (464)
403 PRK08268 3-hydroxy-acyl-CoA de 88.3 0.65 1.4E-05 51.8 5.2 34 158-191 8-41 (507)
404 PRK14619 NAD(P)H-dependent gly 88.2 0.74 1.6E-05 47.9 5.3 34 157-190 4-37 (308)
405 COG1748 LYS9 Saccharopine dehy 88.2 0.64 1.4E-05 49.5 4.7 32 158-189 2-34 (389)
406 cd05292 LDH_2 A subgroup of L- 88.1 0.67 1.5E-05 48.2 4.9 32 159-190 2-35 (308)
407 TIGR03143 AhpF_homolog putativ 88.1 0.62 1.4E-05 52.8 5.0 35 157-191 143-177 (555)
408 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.0 0.56 1.2E-05 52.2 4.4 34 158-191 6-39 (503)
409 PRK00094 gpsA NAD(P)H-dependen 87.8 0.72 1.6E-05 48.3 5.0 33 158-190 2-34 (325)
410 PRK12770 putative glutamate sy 87.5 0.72 1.6E-05 49.0 4.8 34 157-190 172-206 (352)
411 PRK02106 choline dehydrogenase 87.4 0.64 1.4E-05 52.8 4.6 36 156-191 4-40 (560)
412 PRK14620 NAD(P)H-dependent gly 87.1 0.8 1.7E-05 48.1 4.8 32 159-190 2-33 (326)
413 PRK07531 bifunctional 3-hydrox 86.9 0.72 1.6E-05 51.5 4.5 33 158-190 5-37 (495)
414 TIGR01438 TGR thioredoxin and 86.8 0.82 1.8E-05 50.9 4.9 32 158-189 181-212 (484)
415 COG0771 MurD UDP-N-acetylmuram 86.8 0.79 1.7E-05 49.8 4.5 36 157-192 7-42 (448)
416 PTZ00052 thioredoxin reductase 86.7 0.82 1.8E-05 51.1 4.8 32 158-189 183-214 (499)
417 PRK09424 pntA NAD(P) transhydr 86.7 0.84 1.8E-05 50.6 4.8 35 156-190 164-198 (509)
418 cd00401 AdoHcyase S-adenosyl-L 86.5 0.97 2.1E-05 48.8 5.0 35 156-190 201-235 (413)
419 PRK07417 arogenate dehydrogena 86.4 0.78 1.7E-05 47.1 4.2 32 159-190 2-33 (279)
420 PRK12549 shikimate 5-dehydroge 86.4 0.99 2.2E-05 46.4 4.9 34 157-190 127-161 (284)
421 cd01075 NAD_bind_Leu_Phe_Val_D 86.1 1.4 3E-05 42.8 5.5 34 156-189 27-60 (200)
422 PF02254 TrkA_N: TrkA-N domain 86.1 1.1 2.5E-05 38.8 4.5 32 160-191 1-32 (116)
423 PRK12475 thiamine/molybdopteri 85.9 1.1 2.3E-05 47.4 4.9 34 157-190 24-58 (338)
424 PRK11730 fadB multifunctional 85.9 0.8 1.7E-05 53.5 4.3 34 158-191 314-347 (715)
425 PF00899 ThiF: ThiF family; I 85.7 1.2 2.6E-05 40.1 4.6 35 157-191 2-37 (135)
426 PRK02472 murD UDP-N-acetylmura 85.7 1.1 2.4E-05 49.4 5.1 34 157-190 5-38 (447)
427 PRK08306 dipicolinate synthase 85.6 1.2 2.6E-05 46.1 5.1 35 156-190 151-185 (296)
428 PRK01710 murD UDP-N-acetylmura 85.5 1 2.2E-05 49.8 4.8 33 158-190 15-47 (458)
429 PRK07688 thiamine/molybdopteri 85.4 1.2 2.6E-05 47.0 5.0 34 157-190 24-58 (339)
430 PRK04308 murD UDP-N-acetylmura 85.4 1.3 2.9E-05 48.6 5.7 36 157-192 5-40 (445)
431 PRK15057 UDP-glucose 6-dehydro 85.3 0.91 2E-05 48.9 4.2 32 159-191 2-33 (388)
432 KOG2495 NADH-dehydrogenase (ub 85.2 43 0.00093 36.0 16.0 53 387-442 274-328 (491)
433 COG3634 AhpF Alkyl hydroperoxi 85.1 0.82 1.8E-05 47.0 3.4 34 156-189 353-386 (520)
434 COG1250 FadB 3-hydroxyacyl-CoA 85.1 1 2.2E-05 46.5 4.1 33 158-190 4-36 (307)
435 TIGR02437 FadB fatty oxidation 84.9 0.94 2E-05 52.8 4.3 35 157-191 313-347 (714)
436 PLN02353 probable UDP-glucose 84.8 1.1 2.5E-05 49.4 4.7 34 158-191 2-37 (473)
437 PF13478 XdhC_C: XdhC Rossmann 84.5 1.3 2.9E-05 39.9 4.2 32 160-191 1-32 (136)
438 PRK04690 murD UDP-N-acetylmura 84.5 1.2 2.6E-05 49.3 4.8 34 157-190 8-41 (468)
439 KOG2755 Oxidoreductase [Genera 84.5 0.72 1.6E-05 45.7 2.6 33 160-192 2-36 (334)
440 cd01487 E1_ThiF_like E1_ThiF_l 84.1 1.5 3.2E-05 41.5 4.6 32 159-190 1-33 (174)
441 PRK03369 murD UDP-N-acetylmura 84.0 1.3 2.9E-05 49.3 4.9 33 157-189 12-44 (488)
442 TIGR01505 tartro_sem_red 2-hyd 84.0 1.1 2.4E-05 46.2 4.0 32 159-190 1-32 (291)
443 TIGR02356 adenyl_thiF thiazole 83.9 1.6 3.5E-05 42.3 4.9 34 157-190 21-55 (202)
444 PRK00066 ldh L-lactate dehydro 83.9 1.9 4.1E-05 45.1 5.6 36 155-190 4-41 (315)
445 cd05191 NAD_bind_amino_acid_DH 83.9 2.1 4.6E-05 35.1 4.9 32 157-188 23-55 (86)
446 TIGR01915 npdG NADPH-dependent 83.8 1.5 3.3E-05 43.1 4.7 32 159-190 2-34 (219)
447 PRK15116 sulfur acceptor prote 83.8 1.7 3.6E-05 44.1 5.0 34 157-190 30-64 (268)
448 PRK06223 malate dehydrogenase; 83.8 1.6 3.5E-05 45.3 5.2 33 158-190 3-36 (307)
449 TIGR02853 spore_dpaA dipicolin 83.7 1.6 3.4E-05 44.9 4.9 35 156-190 150-184 (287)
450 KOG2304 3-hydroxyacyl-CoA dehy 83.7 1.2 2.6E-05 43.0 3.6 36 156-191 10-45 (298)
451 PRK12810 gltD glutamate syntha 83.6 2.6 5.6E-05 46.8 7.0 48 393-440 336-397 (471)
452 PRK00421 murC UDP-N-acetylmura 83.6 1.3 2.9E-05 48.9 4.7 35 157-191 7-42 (461)
453 PTZ00082 L-lactate dehydrogena 83.6 2 4.3E-05 45.0 5.7 35 157-191 6-41 (321)
454 cd05311 NAD_bind_2_malic_enz N 83.5 1.5 3.3E-05 43.3 4.6 34 157-190 25-61 (226)
455 cd01078 NAD_bind_H4MPT_DH NADP 83.3 1.8 4E-05 41.5 5.0 33 157-189 28-61 (194)
456 TIGR02441 fa_ox_alpha_mit fatt 83.2 1.2 2.5E-05 52.3 4.1 34 158-191 336-369 (737)
457 PTZ00318 NADH dehydrogenase-li 83.1 1.5 3.4E-05 47.8 4.9 35 158-192 174-222 (424)
458 PRK11199 tyrA bifunctional cho 83.1 1.7 3.7E-05 46.6 5.1 37 153-189 94-131 (374)
459 PRK12548 shikimate 5-dehydroge 82.9 1.8 3.9E-05 44.6 4.9 34 157-190 126-160 (289)
460 cd05291 HicDH_like L-2-hydroxy 82.7 1.7 3.8E-05 45.1 4.8 33 159-191 2-36 (306)
461 TIGR02355 moeB molybdopterin s 82.6 1.8 3.9E-05 43.3 4.7 34 157-190 24-58 (240)
462 PRK08644 thiamine biosynthesis 82.5 1.9 4.1E-05 42.2 4.7 34 157-190 28-62 (212)
463 cd01483 E1_enzyme_family Super 82.5 2 4.4E-05 38.9 4.7 32 159-190 1-33 (143)
464 TIGR00507 aroE shikimate 5-deh 82.5 1.9 4.2E-05 43.9 5.0 34 157-190 117-150 (270)
465 PRK00141 murD UDP-N-acetylmura 82.4 1.7 3.6E-05 48.3 4.9 32 158-189 16-47 (473)
466 COG2084 MmsB 3-hydroxyisobutyr 82.3 1.8 3.8E-05 44.2 4.5 33 159-191 2-34 (286)
467 TIGR00936 ahcY adenosylhomocys 82.3 1.9 4.1E-05 46.4 5.0 35 156-190 194-228 (406)
468 PRK12778 putative bifunctional 82.2 1.6 3.6E-05 51.4 4.9 34 157-190 570-604 (752)
469 TIGR00561 pntA NAD(P) transhyd 82.1 2 4.3E-05 47.7 5.1 34 157-190 164-197 (511)
470 PRK01368 murD UDP-N-acetylmura 81.8 1.8 3.9E-05 47.8 4.7 32 157-189 6-37 (454)
471 PRK15461 NADH-dependent gamma- 81.7 1.7 3.7E-05 45.0 4.3 32 159-190 3-34 (296)
472 TIGR02440 FadJ fatty oxidation 81.7 1.6 3.4E-05 50.9 4.4 33 158-190 305-338 (699)
473 PTZ00142 6-phosphogluconate de 81.7 1.5 3.2E-05 48.4 4.0 34 158-191 2-35 (470)
474 COG1893 ApbA Ketopantoate redu 81.6 1.6 3.4E-05 45.4 4.0 33 159-191 2-34 (307)
475 PRK11154 fadJ multifunctional 81.5 1.5 3.3E-05 51.1 4.3 34 157-190 309-343 (708)
476 PRK07502 cyclohexadienyl dehyd 81.5 2.2 4.7E-05 44.4 5.0 33 158-190 7-41 (307)
477 PF00670 AdoHcyase_NAD: S-aden 81.3 2.2 4.7E-05 39.6 4.3 34 157-190 23-56 (162)
478 PRK05690 molybdopterin biosynt 81.1 2.2 4.7E-05 42.8 4.7 33 157-189 32-65 (245)
479 PRK05476 S-adenosyl-L-homocyst 80.6 2.3 5E-05 46.1 5.0 35 156-190 211-245 (425)
480 PTZ00117 malate dehydrogenase; 80.6 2.6 5.5E-05 44.2 5.2 34 157-190 5-39 (319)
481 cd01339 LDH-like_MDH L-lactate 80.4 2 4.4E-05 44.5 4.3 31 160-190 1-32 (300)
482 PRK00683 murD UDP-N-acetylmura 80.4 2.1 4.6E-05 46.7 4.7 33 158-190 4-36 (418)
483 COG1252 Ndh NADH dehydrogenase 80.3 1.5 3.2E-05 47.1 3.3 60 157-237 155-227 (405)
484 PRK02006 murD UDP-N-acetylmura 80.2 2.1 4.6E-05 47.9 4.7 33 158-190 8-40 (498)
485 TIGR01809 Shik-DH-AROM shikima 80.1 2.6 5.7E-05 43.3 5.0 34 157-190 125-159 (282)
486 PRK08328 hypothetical protein; 80.0 2.5 5.4E-05 42.0 4.6 34 157-190 27-61 (231)
487 PRK00258 aroE shikimate 5-dehy 79.9 2.7 5.8E-05 43.1 5.0 34 157-190 123-157 (278)
488 cd01065 NAD_bind_Shikimate_DH 79.7 3.1 6.6E-05 38.2 4.9 34 157-190 19-53 (155)
489 PF07992 Pyr_redox_2: Pyridine 79.5 2.2 4.8E-05 40.8 4.0 52 391-442 63-121 (201)
490 PRK03803 murD UDP-N-acetylmura 79.2 2.3 4.9E-05 46.9 4.5 33 158-190 7-39 (448)
491 TIGR02964 xanthine_xdhC xanthi 79.1 3.1 6.7E-05 41.7 5.0 36 156-191 99-134 (246)
492 PRK11559 garR tartronate semia 79.0 2.3 5E-05 43.9 4.3 33 158-190 3-35 (296)
493 PRK14027 quinate/shikimate deh 79.0 3 6.4E-05 42.8 5.0 34 157-190 127-161 (283)
494 PRK12779 putative bifunctional 78.9 2.6 5.6E-05 50.8 5.1 35 156-190 446-480 (944)
495 PRK03806 murD UDP-N-acetylmura 78.9 2.8 6.2E-05 46.0 5.1 34 157-190 6-39 (438)
496 TIGR00872 gnd_rel 6-phosphoglu 78.8 2.7 5.8E-05 43.5 4.7 32 159-190 2-33 (298)
497 cd00757 ThiF_MoeB_HesA_family 78.7 2.9 6.2E-05 41.5 4.6 34 157-190 21-55 (228)
498 PF00056 Ldh_1_N: lactate/mala 78.4 4 8.6E-05 37.1 5.1 32 159-190 2-36 (141)
499 PLN02520 bifunctional 3-dehydr 78.3 2.8 6.1E-05 47.1 4.9 33 157-189 379-411 (529)
500 cd05293 LDH_1 A subgroup of L- 78.3 3.2 7E-05 43.2 5.1 35 156-190 2-38 (312)
No 1
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.5e-60 Score=528.84 Aligned_cols=493 Identities=70% Similarity=1.234 Sum_probs=405.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
+||+|||||++||++|.+|+++|++|+|+||+..+||+++++.++||.||.|++.+.++....+.+.+.+.++.++..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 68999999999999999999999999999999999999999999999999999999887655566778888888887766
Q ss_pred EeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcChhh
Q 006176 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (658)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (658)
..+.+....+.++++..+.++.+.+++.+++.+.+|.+...+++|++.+.+.+..+..+....+..+......+...+..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLA 160 (493)
T ss_pred ccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhh
Confidence 66655567778888888999999999999999999999999999999888776644333222222222222222222222
Q ss_pred hhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCCccccCCChHHHHHHHHHHHH
Q 006176 318 CLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLA 397 (658)
Q Consensus 318 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~ 397 (658)
...+..+..+++.+++++++.++.++.+++..+.+.+..++...|+..+...+.....+++++|.||+..++++|.+.++
T Consensus 161 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~~~ 240 (493)
T TIGR02730 161 CLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKGLE 240 (493)
T ss_pred hhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHHHH
Confidence 22233455688999999999999999999887776654445677776655554444557889999999999999999999
Q ss_pred HcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCceEEEEEe
Q 006176 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (658)
Q Consensus 398 ~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~ 477 (658)
++|++|+++++|++|..+++++.+|++.+|+++.||.||+|++++.++.+|++...++...++..+.++.+++.++++++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~ 320 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLG 320 (493)
T ss_pred HCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEE
Confidence 99999999999999999989999999999988999999999999999888888766766554455666778899999999
Q ss_pred eecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHHHHHHHHHH
Q 006176 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (658)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~ 557 (658)
++.+..|.....|+++++ +|..+..+.+.+|++.|+..||+++|+|+++++++++.+...|.+++.++|++.|+++.++
T Consensus 321 l~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~ 399 (493)
T TIGR02730 321 VKADVLPPGTECHHILLE-DWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAER 399 (493)
T ss_pred ecCccCCCCCCccEEecc-hhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHH
Confidence 998765544444565553 4655545556789999999999999999999988888777889888888899999999999
Q ss_pred HHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHh
Q 006176 558 IINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVA 637 (658)
Q Consensus 558 il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~ga~ 637 (658)
+++.|+ +++|+++++|+..++.||.|+++|++..+|.||..+...+.+...+|.++|+++|||+||+++|||+|+++|+
T Consensus 400 il~~l~-~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~ 478 (493)
T TIGR02730 400 IIDRLE-KIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVA 478 (493)
T ss_pred HHHHHH-HHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHH
Confidence 999999 8899999999999999999999999999999987665433333333667899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhc
Q 006176 638 FSGVMCAHRVAADIG 652 (658)
Q Consensus 638 ~sG~~aA~~Il~~lg 652 (658)
.||+.||+.|++++|
T Consensus 479 ~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 479 FSGFACAHRVAADLG 493 (493)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=4.3e-53 Score=471.33 Aligned_cols=478 Identities=25% Similarity=0.352 Sum_probs=368.5
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCc----
Q 006176 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE---- 235 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~---- 235 (658)
|||||||++||+||.+|+++|++|+|+|+++.+||+++|++++||.||.|++++.. ...+.++++++|.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~------~~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM------PEALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc------ccHHHHHHHHcCCChhhe
Confidence 68999999999999999999999999999999999999999999999999999863 34577788888854
Q ss_pred eeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh-hhhhhhccchhhHhhhhhhcC
Q 006176 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNAL-NSLELKSLEEPIYLFGQFFKR 314 (658)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 314 (658)
++..+.+....+.++++..+.++.+.+++.+++.+.+|.+.+.+.+|++.....+... ..+...+..... .+...
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 150 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPR----DLLRA 150 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHH----HHHhH
Confidence 3444544455666788888999999999999999999999999999998877766522 111111111111 11110
Q ss_pred hhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCCccccCCChHHHHHHHHH
Q 006176 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAK 394 (658)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~ 394 (658)
. .......+...++.+++++++.++.++.++...+.+.+ ..+.+.+..+..+... .+.++.++|.||++.++++|.+
T Consensus 151 ~-~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~~-~~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 151 D-LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISAL-EREWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred h-hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHHH-HhhceEEEcCCCHHHHHHHHHH
Confidence 0 00112234567889999999999999999876554443 5566666655544332 3456888999999999999999
Q ss_pred HHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCceEEE
Q 006176 395 GLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSI 474 (658)
Q Consensus 395 ~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v 474 (658)
.++++|++|+++++|++|..+++++++|++.+|+++.||.||+|+++..++..|++....+...++..+.++.+.+.+++
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~ 307 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVL 307 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEE
Confidence 99999999999999999999988888999999988999999999999888777776644444444444566778899999
Q ss_pred EEeeecCc-CCCCCCcceeeecchhhhh-----c----cCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccCh
Q 006176 475 HMGVKAEV-LPPDTDCHHFVLEDDWNRL-----E----EPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (658)
Q Consensus 475 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~ 544 (658)
+++++... ..+....|++++.++|+.. . .....+|++.++..||+++|+|++++++++..+.+.+ ..
T Consensus 308 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~---~~ 384 (502)
T TIGR02734 308 YFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT---AD 384 (502)
T ss_pred EEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC---CC
Confidence 99998421 1133345667665555421 0 0124689999999999999999999988887653212 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh-CCCCcCcEEEEEecChhHHHHHhcCCCCc-ccCCCCCCCCCCCCCCC-CCCCCCcEE
Q 006176 545 KDYDAKKELVADEIINRLENKL-FPGLKQSIAFREIGSPKTHRRYLARDQGT-YGPMPRGTPKGLLGMPF-NTTGINGLY 621 (658)
Q Consensus 545 ~~~~~~ke~~~~~il~~L~~~~-~P~l~~~i~~~~~~tP~~~~~~~~~~~G~-yg~~p~~~~~~~~~~p~-~~t~i~gLy 621 (658)
.+|++.|+++.+++++.|+ +. +|+++++|+..++.||.||++|++.++|+ ||..+...+.. ..+|. .+|+++|||
T Consensus 385 ~~~~~~k~~~~~~il~~l~-~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~-~~rp~~~~t~i~gLy 462 (502)
T TIGR02734 385 VDWSVEGPRYRDRILAYLE-ERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSA-WFRPHNRDRKIDNLY 462 (502)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcc-cCCCCCCCCCCCCEE
Confidence 4677789999999999999 76 99999999999999999999999988886 76544332222 23554 468999999
Q ss_pred EeCCCccCCCChhHHhhhHHHHHHHHHHHhcccC
Q 006176 622 CVGDSCFPGQGVIAVAFSGVMCAHRVAADIGNRI 655 (658)
Q Consensus 622 laG~~~~pG~Gv~ga~~sG~~aA~~Il~~lg~~~ 655 (658)
+||+++|||+|+++|+.||+.||++|+++++...
T Consensus 463 l~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 463 LVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999998643
No 3
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.9e-54 Score=435.72 Aligned_cols=488 Identities=35% Similarity=0.514 Sum_probs=370.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceee-EeeCCeEEccccccccCCcCCCchH-HHHHHHH--
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLN-LITQALA-- 230 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t-~~~~g~~~d~G~~~~~g~~~~~~~~-~~~~ll~-- 230 (658)
+..||++|||+|..||.||.+|+|.|.+|+|+|++...||.+-+ +.++||+|+.+...+....+.+... .+.+..-
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l 91 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRL 91 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhh
Confidence 45799999999999999999999999999999999787776654 4579999998876654433322111 1111111
Q ss_pred --------------------hcCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 006176 231 --------------------AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIF 290 (658)
Q Consensus 231 --------------------~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 290 (658)
.+|.++...+.+ ..+|..+| ...++.+++|+.++...+++..+... +...++...
T Consensus 92 ~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~-i~kfs~~d---a~~~peye~fl~~~~~~~~pl~d~~~-~~~~~~~~~ 166 (561)
T KOG4254|consen 92 HERSPCSFTPSLMGYLPEGLLLGRDMAENQKE-IAKFSQPD---ARAYPEYEKFLVELYGAIDPLLDAAP-ADPPLFIHG 166 (561)
T ss_pred ccCCCccccchhhccchhhhhhccccccchhh-hhhhcCCc---cccchhHHHHHHHHHhccchhhhccc-cccchhhhh
Confidence 112222111111 22333333 34556677888877777765554433 333333333
Q ss_pred HHhhhhhhhccchhhHhhhhhhcChhhhhhHhhcccccHHHHHHHhcC--CHHHHHHHhhhhhhhccCCCCCchHHHHHH
Q 006176 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIK--DPQLLSFIDAECFIVSTINALQTPMINASM 368 (658)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~ 368 (658)
.....+.......|+.+.+.+..++........+.+.+ ..+.+|+. ++.+..+.+..++...+.....++....-.
T Consensus 167 ~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~--k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvllh~ 244 (561)
T KOG4254|consen 167 LLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPIS--KVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLLHH 244 (561)
T ss_pred hhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchh--hHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHHHH
Confidence 33333444455566777777777777666666666554 34555554 556667778888887777777777655444
Q ss_pred HH--hHhhcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh
Q 006176 369 VL--CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG 446 (658)
Q Consensus 369 ~~--~~~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~ 446 (658)
++ .+.+.++|.||.||++.+++++++.++++|++|.+++.|++|..++|+++||+++||+++.++.||+++++|.|+.
T Consensus 245 vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 245 VLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE 324 (561)
T ss_pred HHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH
Confidence 44 6778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCChHHHHHHHhh-c-----cCCceEE---------EEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEe
Q 006176 447 KLLKGEQLPKEEENFQKLY-V-----KAPSFLS---------IHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLS 511 (658)
Q Consensus 447 ~Ll~~~~lp~~~~~~~~~~-~-----~~~s~~~---------v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (658)
+|++.+.+|++.......+ . ..++++. -|.+++.....++.+++|.++++.++.+....+.|+++
T Consensus 325 kLlp~e~LPeef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~s 404 (561)
T KOG4254|consen 325 KLLPGEALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELS 404 (561)
T ss_pred HhCCCccCCchhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEe
Confidence 9999999998752111111 1 2233333 13333333334455567777777777777778889999
Q ss_pred ccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcC
Q 006176 512 IPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLAR 591 (658)
Q Consensus 512 ~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~ 591 (658)
+||..||+++|+|+|++++++....+.|.+....+|+..|+++++++++.++ +++|+|++.++..++.||.|++||.+.
T Consensus 405 iPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie-~l~Pgfsssv~~~dvgTP~t~qr~l~~ 483 (561)
T KOG4254|consen 405 IPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIE-KLAPGFSSSVESYDVGTPPTHQRFLGR 483 (561)
T ss_pred cccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHH-HHcCCccceEEEEecCCCchhhHHhcC
Confidence 9999999999999999999999888999988766999999999999999999 999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCC-----CCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhc
Q 006176 592 DQGTYGPMPRGTPKGLLGMPFN-----TTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 592 ~~G~yg~~p~~~~~~~~~~p~~-----~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
++|+|++.+.....+.+.+|.+ +|||+|||+||+.+|||+||.++ .|+++|...+.+.+
T Consensus 484 ~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~--aG~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 484 PGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAA--AGRLAAHSAILDRK 547 (561)
T ss_pred CCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCcccc--chhHHHHHHhhhhh
Confidence 9999998888888888888877 89999999999999999999997 49999999877664
No 4
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=5.1e-52 Score=461.30 Aligned_cols=474 Identities=26% Similarity=0.380 Sum_probs=353.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
.||+|||||++||+||.+|+++|++|+|+|+++.+||++++++++||.||.|+|++.++..+ ..+.++++++|+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~---~~~~~~~~~lg~~~~ 78 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPG---GIHARIFRELGIPLP 78 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcC---CHHHHHHHHcCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999865433 245677888898754
Q ss_pred -EeeCCCeEEEEcCCC-cEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhc----cchhhHhhhhh
Q 006176 238 -VIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKS----LEEPIYLFGQF 311 (658)
Q Consensus 238 -~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 311 (658)
....+....+.++|+ ..+.++.+.+++.+++.+.+|.+.. |+....+.+.......... ....... ...
T Consensus 79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (492)
T TIGR02733 79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWDL-LQL 153 (492)
T ss_pred ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHHH-HHH
Confidence 223333455566777 5677889999999999999988743 4444444333322211110 0111111 110
Q ss_pred hcC-hhhhhhHhhcccccHHHHHHHh--cCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHh-HhhcCCccccCCChHH
Q 006176 312 FKR-PLECLTLAYYLPQNAGNIARKY--IKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-DRHFGGINYPVGGVGG 387 (658)
Q Consensus 312 ~~~-~~~~~~~~~~~~~s~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~p~gG~~~ 387 (658)
... .........+...++.++++++ +.++.++.++...+....+..+.+.++.++.+... .....|.++++||++.
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~ 233 (492)
T TIGR02733 154 VSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQT 233 (492)
T ss_pred HHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHH
Confidence 100 0001112223457888999887 78999999998776555555566666665543322 2223577889999999
Q ss_pred HHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC-----cEEEcCEEEECCChhHHHhhccCCCCCChHHHHHH
Q 006176 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQ 462 (658)
Q Consensus 388 l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~ 462 (658)
|+++|++.++++|++|+++++|++|..+++++.+|.+.+| +++.||+||+|+++..+. +|++++.+|.+..+..
T Consensus 234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~-~ll~~~~~~~~~~~~~ 312 (492)
T TIGR02733 234 LSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLL-ELLGPLGLPPGYRKRL 312 (492)
T ss_pred HHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHH-HhcCcccCCHHHHHHH
Confidence 9999999999999999999999999999888878877665 578999999999998765 5777666776666566
Q ss_pred HhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhccc
Q 006176 463 KLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGL 542 (658)
Q Consensus 463 ~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l 542 (658)
..+..+++.+++++++++...+.+...|..... ++.+.+|++.++ .||+++|+|++++++.++.+...|..+
T Consensus 313 ~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~ 384 (492)
T TIGR02733 313 KKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS-------DHQGSLFVSISQ-EGDGRAPQGEATLIASSFTDTNDWSSL 384 (492)
T ss_pred hcCCCCCceEEEEEeecccccCCCCCcceeecc-------CCCceEEEEeCC-ccccCCCCCceEEEEEcCCCHHHHcCC
Confidence 667778888899999987543322222222111 112257887755 578999999999988888777788766
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCc-ccCCCCCCCCCCCCCCCCCCCCCcEE
Q 006176 543 AQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT-YGPMPRGTPKGLLGMPFNTTGINGLY 621 (658)
Q Consensus 543 ~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~-yg~~p~~~~~~~~~~p~~~t~i~gLy 621 (658)
+..+|++.|+++++++++.|+ +++|+++++|+..++.||.||++|++.++|+ ||..+...+...+ ++..+|+++|||
T Consensus 385 ~~~~y~~~k~~~~~~il~~le-~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~-~~~~~t~i~gLy 462 (492)
T TIGR02733 385 DEEDYTAKKKQYTQTIIERLG-HYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPF-GLSSRTPVKGLW 462 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCc-CCCCCCCCCCeE
Confidence 677899999999999999999 8899999999999999999999999998886 6654433222222 244579999999
Q ss_pred EeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 006176 622 CVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (658)
Q Consensus 622 laG~~~~pG~Gv~ga~~sG~~aA~~Il~~ 650 (658)
+||+++|||+|++|++.||+.||+.|+++
T Consensus 463 l~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 463 LCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred EecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999864
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.4e-47 Score=415.98 Aligned_cols=470 Identities=30% Similarity=0.418 Sum_probs=341.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcC-C
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG-C 234 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG-~ 234 (658)
+.+||||||||++||+||.+|+|+|++|+|+||+..+||+++|++..||+||+|++++.... .. .++++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~------~~-~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPD------PG-PLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCc------hH-HHHHHhccC
Confidence 46899999999999999999999999999999999999999999999999999998886422 12 4445555 3
Q ss_pred c---eeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 235 E---MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 235 ~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
. +...+.++.+...+++|..+..+++.+.+...+.+.+|.+.+.+..+.....+.++.+........... +...
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 151 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSE---LLLV 151 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhh---hhhc
Confidence 2 223333566777788899999999999999999999999999998888766555554443222221111 0011
Q ss_pred hcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCCccccCCChHHHHHH
Q 006176 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKS 391 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~ 391 (658)
.........+..+...+..+++..++.++.++..+.....+.+ ..+...+ ....+.....+..|+++|+||++.|+++
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~-a~~~~~~~~~~~~G~~~p~GG~~al~~a 229 (487)
T COG1233 152 PDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPP-ALYLLLSHLGLSGGVFYPRGGMGALVDA 229 (487)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchh-HHHHHHHHhcccCCeeeeeCCHHHHHHH
Confidence 2223334445556677888888888999999988877655554 4455444 3334444455677999999999999999
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCce
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSF 471 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~ 471 (658)
|++.++++|++|+++++|++|.+++++.++|+..+|+.+.+|.||+++.+ .+...+.+. .+. .+....+....+.
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~--~~~--~~~~~~~~~~~~a 304 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGE--ARR--PRYRGSYLKSLSA 304 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhh--hhh--hccccchhhhhHH
Confidence 99999999999999999999999999877888888877999999999997 333333332 111 1122333445567
Q ss_pred EEEEEeeecCcCCCCCCcceeeecchhhhhccCCC-------ceEEeccCCCCCCCCCCCceEE-EEEeccccchhcccC
Q 006176 472 LSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYG-------SIFLSIPTVLDSSLAPEGHHIL-HIFTICSIEDWEGLA 543 (658)
Q Consensus 472 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~d~~~ap~G~~~l-~~~~~~~~~~w~~l~ 543 (658)
+..+++++.. .++...++.++..+.+..+...+. .+++++|+..||+++|+|++.+ ..+...+ .
T Consensus 305 l~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~-------~ 376 (487)
T COG1233 305 LSLYLGLKGD-LLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP-------S 376 (487)
T ss_pred HHhccCCCCC-CcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC-------c
Confidence 7788888875 333333333444443333333321 4789999999999999998822 2222222 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCC-CCCCCcEEE
Q 006176 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN-TTGINGLYC 622 (658)
Q Consensus 544 ~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~-~t~i~gLyl 622 (658)
..+|++.++++.+. +..++ +++|+++++|+..++.+|.+++++.+.+.|.+........+....+|.. .|+++|||+
T Consensus 377 ~~~~~~~~~~~~~~-~~~~~-~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl 454 (487)
T COG1233 377 LGDYDELKESLADA-IDALE-ELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYL 454 (487)
T ss_pred CCChHHHHHHHHHH-HHHHh-hcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEE
Confidence 23567778888888 77888 8999999999999999999999998888887433333333334456655 599999999
Q ss_pred eCCCccCCCChhHHhhhHHHHHHHHHHHhc
Q 006176 623 VGDSCFPGQGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 623 aG~~~~pG~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
||++||||.|++++..++..++..+..+.+
T Consensus 455 ~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~~~ 484 (487)
T COG1233 455 VGASTHPGGGVPGVPGSAAAVALLIDLDRG 484 (487)
T ss_pred eCCcCCCCCCcchhhhhHHHHHhhhccccc
Confidence 999999999999987777666666655544
No 6
>PLN02612 phytoene desaturase
Probab=100.00 E-value=3.4e-32 Score=304.56 Aligned_cols=441 Identities=18% Similarity=0.261 Sum_probs=268.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEee-CCeEEccccccccCCcCCCchHHHHHHHHhcC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (658)
....+|+|||+|++||+||++|+++|++|+|+|+.+.+||++.++.. +|+.+|.|.|++++.. ..+.++++++|
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~-----~~~~~ll~elG 165 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY-----PNVQNLFGELG 165 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCC-----chHHHHHHHhC
Confidence 34578999999999999999999999999999999999999999874 7899999999998743 24778899999
Q ss_pred CceeEeeCCCeEEEEcCCC-cEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 234 CEMEVIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
+.......+....+.+++. ..+....... ..|.....+..+.... ........+.....+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~P~~l~~~~~~l~~~----------~~ls~~~kl~~~~~~~ 227 (567)
T PLN02612 166 INDRLQWKEHSMIFAMPNKPGEFSRFDFPE--------VLPAPLNGIWAILRNN----------EMLTWPEKIKFAIGLL 227 (567)
T ss_pred CcccceecccceEEEecCCCCceeeCcCch--------hcCChhhhhHHHHhcC----------ccCCHHHHHHHHHhhh
Confidence 8654332222222222211 1111000000 0111101111110000 0000000000000000
Q ss_pred cC-hhhhhhHhhcccccHHHHHHHhcCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHhHh----hcCCccccCCCh-
Q 006176 313 KR-PLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDR----HFGGINYPVGGV- 385 (658)
Q Consensus 313 ~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~g~~~p~gG~- 385 (658)
.. .........+...++.+++++...++.+. .++..........++.+.++......+... +.....++.|+.
T Consensus 228 ~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~ 307 (567)
T PLN02612 228 PAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 307 (567)
T ss_pred HHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCch
Confidence 00 00000112344678889999887666554 455554433434556565554433221111 111344566665
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKL 464 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~ 464 (658)
..++++|.+.+++.|++|++|++|++|..+ ++++++|++.+|+++.||+||+|+++ ..+..|++....+....+.+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~Ll~~~~~~~~~~~~l~~ 386 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLLLPDQWKEIPYFKKLDK 386 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHhCcchhcCcHHHHHHHh
Confidence 689999999999999999999999999985 55567788889988999999999976 4456677653323222222333
Q ss_pred hccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccCh
Q 006176 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (658)
Q Consensus 465 ~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~ 544 (658)
+. ..++++++++++++++.+ . .+++ +..+ +...++..++... +...++|+.++.+. ....++|.++
T Consensus 387 l~-~~~v~~v~l~~dr~~~~~-~-~~~~-~~~~------~~~~~~~d~S~~~-~~~~~~~~~ll~~~-~~~a~~~~~~-- 452 (567)
T PLN02612 387 LV-GVPVINVHIWFDRKLKNT-Y-DHLL-FSRS------PLLSVYADMSTTC-KEYYDPNKSMLELV-FAPAEEWISR-- 452 (567)
T ss_pred cC-CCCeEEEEEEECcccCCC-C-Ccee-ecCC------CCceeehhhhhcc-hhhcCCCCeEEEEE-EEcChhhhcC--
Confidence 33 446889999999986432 1 2333 3221 1112222222222 23455666655433 4455667654
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCCc------CcEE-EEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCC
Q 006176 545 KDYDAKKELVADEIINRLENKLFPGLK------QSIA-FREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGI 617 (658)
Q Consensus 545 ~~~~~~ke~~~~~il~~L~~~~~P~l~------~~i~-~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i 617 (658)
.+|++++.++++|+ ++||+.. ..++ +..+.+|.++ |...|.... .+|..++|+
T Consensus 453 -----sdeei~e~vl~~L~-~lfp~~~~~~~~~~~i~~~~~v~~P~a~----------~~~~pg~~~----~rp~~~tPi 512 (567)
T PLN02612 453 -----SDEDIIDATMKELA-KLFPDEISADQSKAKILKYHVVKTPRSV----------YKTVPNCEP----CRPLQRSPI 512 (567)
T ss_pred -----CHHHHHHHHHHHHH-HHCCcccccccCCceEEEEEEeccCCce----------EEeCCCCcc----cCccccCcc
Confidence 35889999999999 9999762 2233 3455566553 332333221 256678999
Q ss_pred CcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhcc
Q 006176 618 NGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGN 653 (658)
Q Consensus 618 ~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg~ 653 (658)
+|||||||||.++ ++|+||+.||++||++|+++++.
T Consensus 513 ~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 513 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999775 58999999999999999999874
No 7
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=4.4e-31 Score=292.01 Aligned_cols=476 Identities=13% Similarity=0.159 Sum_probs=284.3
Q ss_pred cccccccccchhhh--cCCCCCCCCC-CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEe-eCCeEE
Q 006176 131 LMAKTVMSVDNLVE--IGGNEGMSRG-ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTF 206 (658)
Q Consensus 131 ~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~ 206 (658)
.++|+.++|..... ....+.+... -...+|+|||+|++||++|+.|+++|++|+|+|+.+.+||+++++. ..|+.+
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~ 125 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI 125 (569)
T ss_pred HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEE
Confidence 36777777766544 2222211111 1346999999999999999999999999999999999999999986 579999
Q ss_pred ccccccccCCcCCCchHHHHHHHHhcCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006176 207 DVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGEC 286 (658)
Q Consensus 207 d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 286 (658)
|.|.|++++. ...+.++++++|+..+.........+...++....+.... ..+.....+..+....
T Consensus 126 e~G~h~~~~~-----~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~---------p~~~pl~~~~~~l~~~ 191 (569)
T PLN02487 126 EMGLHVFFGC-----YNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRF---------PVGAPLHGIKAFLTTN 191 (569)
T ss_pred ecceeEecCC-----cHHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCC---------CCCchhhhHHHHHcCC
Confidence 9999999863 3468889999998755432222222223333322211000 0000000111111000
Q ss_pred H-HHHHHhhhhhhhccchhhHhhhhhhcChhhhhhHhhcccccHHHHHHHhcCCH-HHHHHHhhhhhhhccCCCCCchHH
Q 006176 287 W-KIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDP-QLLSFIDAECFIVSTINALQTPMI 364 (658)
Q Consensus 287 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~p~~ 364 (658)
. ...+.+.. .......+. +..+............+...++.++++++..++ .+..+++..+....+.++++.++.
T Consensus 192 ~Ls~~dklr~-~~~l~~~~~--~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~ 268 (569)
T PLN02487 192 QLEPYDKARN-ALALATSPV--VRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISAR 268 (569)
T ss_pred CCCHHHHHhh-cccccccch--hhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 0 00000000 000000000 000000000000111234578999999999887 677888888887777888888876
Q ss_pred HHHHHHhH---hhc-CCccccCCChH-HHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-----EEEEEEE---CCCcEEE
Q 006176 365 NASMVLCD---RHF-GGINYPVGGVG-GIAKSLAKGLADKGSEILYKANVTKVILEQG-----KAVGVRL---SDGREFY 431 (658)
Q Consensus 365 ~~~~~~~~---~~~-~g~~~p~gG~~-~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~-----~v~gV~~---~~G~~i~ 431 (658)
.....+.. ... ....+++||.. .|++.+++.|+++|++|+++++|++|..+++ ++++|++ .+++++.
T Consensus 269 ~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~ 348 (569)
T PLN02487 269 CMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVK 348 (569)
T ss_pred HHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEE
Confidence 55544332 111 23678999998 5999999999999999999999999998732 4788988 3445689
Q ss_pred cCEEEECCChhHHHhhccCCCCCChHHHHH--HHhhccCCceEEEEEeeecCcCCCCC-Cc-ce----eeecchhhhhcc
Q 006176 432 AKTIISNATRWDTFGKLLKGEQLPKEEENF--QKLYVKAPSFLSIHMGVKAEVLPPDT-DC-HH----FVLEDDWNRLEE 503 (658)
Q Consensus 432 ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~--~~~~~~~~s~~~v~l~~~~~~~~~~~-~~-~~----~~~~~~~~~~~~ 503 (658)
+|.||+|++++.+ .+|+++. ++. ...+ +..+. ...+++++|.++++...+.. +. .. .-++..| +..+
T Consensus 349 aD~VV~A~p~~~~-~~Llp~~-~~~-~~~~~~l~~L~-~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~-~~~~ 423 (569)
T PLN02487 349 ADAYVAACDVPGI-KRLLPEQ-WRE-YEFFDNIYKLV-GVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLL-YSAD 423 (569)
T ss_pred CCEEEECCCHHHH-HHhCCch-hhc-cHHHhHHhcCC-CeeEEEEEEEecccccccccccccccccccccccccc-cccC
Confidence 9999999998864 6888753 222 1112 12222 45688999999987643321 00 00 0022222 1111
Q ss_pred CCCceEEeccCCCCCC-C-C-CCCceEEEEEeccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCc-EEEEEe
Q 006176 504 PYGSIFLSIPTVLDSS-L-A-PEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-IAFREI 579 (658)
Q Consensus 504 ~~~~~~~~~~s~~d~~-~-a-p~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~~ 579 (658)
+...+|.-+. ...+. . . .+| +.+.++... .+.+.. ..+|+++++++++|. +++|.+++. +.+..+
T Consensus 424 ~~~~f~~di~-l~~~~~~~~~~~g-~~l~~vis~-a~~~~~-------~~~~ei~~~~~~~L~-~~~p~~~~~~v~~~~v 492 (569)
T PLN02487 424 ADFSCFADLA-LTSPEDYYKEGEG-SLIQAVLTP-GDPYMP-------LSNDKIVEKVHKQVL-ELFPSSRGLEVTWSSV 492 (569)
T ss_pred CCcceEeeee-cCCHHHHcccCCc-eEEEEEEcC-CccccC-------CCHHHHHHHHHHHHH-HhCcccccCceEEEEE
Confidence 1111211110 00010 0 1 123 344443332 233333 346899999999999 999997654 333222
Q ss_pred cChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhc
Q 006176 580 GSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 580 ~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
.....++|...|... ..||..+|+++|||+|||||.++ .+|+||+.||+.||+.|+++.+
T Consensus 493 ---------v~~~~at~~~~pg~~----~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 493 ---------VKIGQSLYREAPGMD----PFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred ---------EEccCceeccCCCcc----ccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 223345565555432 13688999999999999999765 4899999999999999988763
No 8
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-31 Score=289.17 Aligned_cols=420 Identities=20% Similarity=0.209 Sum_probs=265.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCceeE
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEV 238 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~~ 238 (658)
+|+|||||++||+||++|+++|++|+|+|+.+++||++.++..+|+.+|.|.|.+++ ....+.++++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~-----~~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK-----SDEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc-----ccHHHHHHHHHcCCCCce
Confidence 589999999999999999999999999999999999999999999999999999875 234578999999986443
Q ss_pred eeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCC-cH-HHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcChh
Q 006176 239 IPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPH-EK-EGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (658)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (658)
........+.+. +....+ .+.... .+ ++. .. +.+... ...+ ....
T Consensus 76 ~~~~~~~~~~~~-~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~-------~~~~---~~~~---------------- 122 (434)
T PRK07233 76 RWRETKTGYYVD-GKLYPL-GTPLEL----LR-FPHLSLIDKFRLG-------LLTL---LARR---------------- 122 (434)
T ss_pred eeccCceEEEEC-CeEecC-CCHHHH----Hc-CCCCCHHHHHHhH-------HHHH---hhhh----------------
Confidence 332222223333 222211 111111 11 111 00 000000 0000 0000
Q ss_pred hhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhh-------cCCccccCCChHHHH
Q 006176 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRH-------FGGINYPVGGVGGIA 389 (658)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~~g~~~p~gG~~~l~ 389 (658)
......+...++.+++++.+.++.++.++...+....+..+.+.++......+.... ...+.+|+||++.++
T Consensus 123 -~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~ 201 (434)
T PRK07233 123 -IKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLI 201 (434)
T ss_pred -cccccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHH
Confidence 000112345778888988887777777777766555566777777654322111110 123678999999999
Q ss_pred HHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCC
Q 006176 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAP 469 (658)
Q Consensus 390 ~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~ 469 (658)
++|.+.+++.|++|+++++|++|..++++++.+. .+++++.+|+||+|+++..+ ..+++. ++....+....+. ..
T Consensus 202 ~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~-~~ll~~--~~~~~~~~~~~~~-~~ 276 (434)
T PRK07233 202 DALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPPPIL-ARLVPD--LPADVLARLRRID-YQ 276 (434)
T ss_pred HHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCHHHH-HhhcCC--CcHHHHhhhcccC-cc
Confidence 9999999999999999999999998888776554 56678999999999998665 466643 5544444444443 34
Q ss_pred ceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHH
Q 006176 470 SFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDA 549 (658)
Q Consensus 470 s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~ 549 (658)
+..+++++++.+..+ .++..+.+. +.++..+ ...+..+|...|+|++.+.+.++....+ ..|..
T Consensus 277 ~~~~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~--~~~s~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~ 340 (434)
T PRK07233 277 GVVCMVLKLRRPLTD----YYWLNINDP----GAPFGGV--IEHTNLVPPERYGGEHLVYLPKYLPGDH------PLWQM 340 (434)
T ss_pred ceEEEEEEecCCCCC----CceeeecCC----CCCcceE--EEecccCCccccCCceEEEEeeecCCCC------hhhcC
Confidence 567889999876522 122222110 1233222 2345567777777877654433332221 12344
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcC-cEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCcc
Q 006176 550 KKELVADEIINRLENKLFPGLKQ-SIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCF 628 (658)
Q Consensus 550 ~ke~~~~~il~~L~~~~~P~l~~-~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~ 628 (658)
.++++++.+++.|+ +++|+++. .++...+. ++ ..++...+.+. ...+|...++++|||+||+++.
T Consensus 341 ~~~~~~~~~~~~L~-~~~p~~~~~~~~~~~~~------r~----~~a~~~~~~g~---~~~~~~~~~~~~~l~~aG~~~~ 406 (434)
T PRK07233 341 SDEELLDRFLSYLR-KMFPDFDRDDVRAVRIS------RA----PYAQPIYEPGY---LDKIPPYDTPIEGLYLAGMSQI 406 (434)
T ss_pred CHHHHHHHHHHHHH-HhCCCCChhheeeEEEE------Ee----ccccccccCch---hhcCCCcccCcCCEEEeCCccc
Confidence 57889999999999 99998854 34433321 11 11111111110 0124455678999999999642
Q ss_pred --CCCChhHHhhhHHHHHHHHHHHhc
Q 006176 629 --PGQGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 629 --pG~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
++.+|++|+.||+.||++|++.+.
T Consensus 407 ~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 407 YPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred CCccCchhHHHHHHHHHHHHHhhhhc
Confidence 345899999999999999998875
No 9
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=3e-30 Score=283.59 Aligned_cols=443 Identities=15% Similarity=0.175 Sum_probs=257.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEe-eCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
+|+|||||++||++|++|+++|++|+|+|+.+.+||+++++. ..|+.+|.|+|++++. ...+.++++++|+..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~-----~~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC-----YANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc-----hHHHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999974 6799999999999863 3457889999998755
Q ss_pred EeeCCCeEEEEcCCCcEEEEcC-----CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 238 VIPDPTTVHFHLPNDLSVRVHR-----EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
.........+...++....+.. .+......+.+ ++.- .+.+.. +...... ..+ ....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~l-----s~~dkl-r~~~~~~-------~~~--~~~~~~ 139 (474)
T TIGR02732 76 LLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFT-TSQL-----KWVDKL-RNALALG-------TSP--IVRGLV 139 (474)
T ss_pred cccccceeEEEcCCCcccccccCCCCCCchhhhHHHhc-CCCC-----CHHHHH-HHHHHhh-------hhH--HHhhcc
Confidence 4333322222222232111110 00001111110 0000 000000 0000000 000 000000
Q ss_pred cChhhhhhHhhcccccHHHHHHHhcCCHH-HHHHHhhhhhhhccCCCCCchHHHHHH---HHhHhhc-CCccccCCChHH
Q 006176 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQ-LLSFIDAECFIVSTINALQTPMINASM---VLCDRHF-GGINYPVGGVGG 387 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~-~g~~~p~gG~~~ 387 (658)
........+..+...++.++++++..++. ++.+++..+....+.++.+.++..... .+..... ....+++||...
T Consensus 140 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~ 219 (474)
T TIGR02732 140 DYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDK 219 (474)
T ss_pred ccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcch
Confidence 00000011223345789999999998875 677888777666667777777654422 1111111 245678888765
Q ss_pred -HHHHHHHHHHHcCcEEEeCceeeEEEEeC---C--EEEEEEECCC---cEEEcCEEEECCChhHHHhhccCCCCCC-hH
Q 006176 388 -IAKSLAKGLADKGSEILYKANVTKVILEQ---G--KAVGVRLSDG---REFYAKTIISNATRWDTFGKLLKGEQLP-KE 457 (658)
Q Consensus 388 -l~~~L~~~l~~~G~~I~~~~~V~~I~~~~---~--~v~gV~~~~G---~~i~ad~VV~a~g~~~~~~~Ll~~~~lp-~~ 457 (658)
+.+.|.+.|+++|++|+++++|++|..++ + ++++|++.+| +++.+|+||+|++++.+ ..|+++. .+ ..
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~-~~Ll~~~-~~~~~ 297 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI-KRLLPQE-WRQFE 297 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH-HhhCChh-hhcCH
Confidence 67789999999999999999999999864 2 3778878655 45899999999998875 5787652 11 11
Q ss_pred HHHHHHhhccCCceEEEEEeeecCcCCCCC-Ccceeee----cchhhhhccCCCceEEeccCCCCC-CCCCCCceE-EEE
Q 006176 458 EENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DCHHFVL----EDDWNRLEEPYGSIFLSIPTVLDS-SLAPEGHHI-LHI 530 (658)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~d~-~~ap~G~~~-l~~ 530 (658)
....+..+.+ .++.+++|+++++...+.. .....+. -+++.++.+....++.-+. ...+ ...+.|... +.+
T Consensus 298 ~~~~l~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 375 (474)
T TIGR02732 298 EFDNIYKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLA-LTSPDDYYKEGQGSLLQC 375 (474)
T ss_pred HHhhHhcCCC-CCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhh-ccCHHHHhccCCCeEEEE
Confidence 1122233333 4678999999876533211 0000000 0011011111001111000 0112 122334333 333
Q ss_pred EeccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCc-EEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCC
Q 006176 531 FTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLG 609 (658)
Q Consensus 531 ~~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~ 609 (658)
.+... ..+. +..+++++++++++|+ +++|.+.+. +....+ .....+.|...|... ..
T Consensus 376 ~~~~~-~~~~-------~~~~~~l~~~~~~~L~-~~~p~~~~~~~~~~~v---------~~~~~a~~~~~pg~~----~~ 433 (474)
T TIGR02732 376 VLTPG-DPWM-------PESNEEIAKRVDKQVR-ALFPSSKNLKLTWSSV---------VKLAQSLYREAPGMD----PF 433 (474)
T ss_pred EEeCh-hhhc-------CCCHHHHHHHHHHHHH-HhCccccCCceeEEEE---------EEecCceeccCCCCc----cc
Confidence 33222 2332 2346889999999999 999987553 222111 122234454444322 13
Q ss_pred CCCCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHH
Q 006176 610 MPFNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVA 648 (658)
Q Consensus 610 ~p~~~t~i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il 648 (658)
+|..+|+++|||+||||+.++ .+|+||+.||+.||+.|+
T Consensus 434 ~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 434 RPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 688899999999999999765 489999999999999874
No 10
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=7.4e-30 Score=281.25 Aligned_cols=423 Identities=18% Similarity=0.164 Sum_probs=251.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCc
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~ 235 (658)
.+|+|||||++||+||+.|+++| ++|+|+|+++++||+++|+...|+.+|.|+|++++. ...+.++++++|++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~-----~~~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLAR-----KPSAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCC-----cHHHHHHHHHcCCc
Confidence 36999999999999999999988 899999999999999999999999999999988752 22378899999987
Q ss_pred eeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhc
Q 006176 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGV--LAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (658)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (658)
.+.........+.+.+|....++... +. ..|...... ..++....+... ... ..
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~p~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~----------- 131 (451)
T PRK11883 76 DELVANTTGQSYIYVNGKLHPIPPGT------VM-GIPTSIAPFLFAGLVSPIGKLRA-AAD-----LR----------- 131 (451)
T ss_pred cceecCCCCcceEEECCeEEECCCCC------ee-ccCCCchhhhcCCCCCHHHHHHh-hCc-----cc-----------
Confidence 54433211111222344433332210 00 001000000 000000000000 000 00
Q ss_pred ChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH--------------hHhh-----
Q 006176 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL--------------CDRH----- 374 (658)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~--------------~~~~----- 374 (658)
. .........++.+++++.+.+..++.++...+....+.++.+.++......+ ....
T Consensus 132 ~----~~~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK11883 132 P----PRWKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK 207 (451)
T ss_pred C----CCCCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence 0 0001123467788888777666666666655443334455555443211000 0000
Q ss_pred --cCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCC
Q 006176 375 --FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (658)
Q Consensus 375 --~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~ 452 (658)
...+++++||++.+++.|.+.+.+. +|+++++|++|..+++.+. |++.+|+++.||+||+|+++..+. .++.++
T Consensus 208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~-v~~~~g~~~~~d~vI~a~p~~~~~-~l~~~~ 283 (451)
T PRK11883 208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYE-IVLSNGGEIEADAVIVAVPHPVLP-SLFVAP 283 (451)
T ss_pred CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEE-EEECCCCEEEcCEEEECCCHHHHH-HhccCh
Confidence 1134578999999999999988553 8999999999998887654 778889899999999999987754 554432
Q ss_pred CCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEe
Q 006176 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (658)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~ 532 (658)
...+....+.+. +..++++.++.+.. .....+.+++..+ .+.....+.+++...|...|+|..++..+.
T Consensus 284 ----~~~~~~~~~~~~-~~~~v~l~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 284 ----PAFALFKTIPST-SVATVALAFPESAT-NLPDGTGFLVARN-----SDYTITACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred ----hHHHHHhCCCCC-ceEEEEEEeccccC-CCCCceEEEecCC-----CCCcEEEEEeEcCcCCCCCCCCcEEEEEec
Confidence 223344455544 45689999988742 1122234444422 111112233455666777888877666555
Q ss_pred ccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCC--CCCCC
Q 006176 533 ICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPK--GLLGM 610 (658)
Q Consensus 533 ~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~--~~~~~ 610 (658)
..+.+.+ .++..++++++.+++.|+ ++++ +....+...+. .|..+|...+.+... ..+ +
T Consensus 353 ~~~~~~~------~~~~~~~~~~~~~~~~L~-~~~g-~~~~~~~~~~~----------rw~~a~p~~~~~~~~~~~~l-~ 413 (451)
T PRK11883 353 GRPGDEA------VVDATDEELVAFVLADLS-KVMG-ITGDPEFTIVQ----------RWKEAMPQYGVGHIERVAEL-R 413 (451)
T ss_pred CCCCCch------hccCCHHHHHHHHHHHHH-HHhC-CCCCceEEEEe----------ecCccCCCCCccHHHHHHHH-H
Confidence 4332221 123356889999999999 7663 43333333221 112222211111100 000 1
Q ss_pred CCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHH
Q 006176 611 PFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 649 (658)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~ 649 (658)
+.... ++|||+||+|+. |.|+++|+.||+.+|++|++
T Consensus 414 ~~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 414 AGLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred Hhhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence 11112 679999999975 78999999999999999975
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=6.2e-30 Score=282.66 Aligned_cols=423 Identities=15% Similarity=0.187 Sum_probs=258.7
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhc
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (658)
+.||+|||||++||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++++. ...+.++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~-----~~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLER-----KKSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccC-----ChHHHHHHHHc
Confidence 46899999999999999999999 9999999999999999999999999999999999853 23478899999
Q ss_pred CCceeEeeCCCeEEEE-cCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 233 GCEMEVIPDPTTVHFH-LPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 233 G~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
|++...........+. ..+|..+.++.....+... ..-.-...+... .. .+
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~---~~~~~~~~~~~~-------~~------------------~~ 128 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKT---GLFSLGGKLRAG-------MD------------------FI 128 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhcC---CCCCchhhHHhh-------hh------------------hc
Confidence 9865433222222222 2224443333322211100 000000000000 00 00
Q ss_pred hcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHHh------------Hh----
Q 006176 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLC------------DR---- 373 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~--~~~~------------~~---- 373 (658)
.... .....++.+++++.+.++....++........+.++.+.++.... +... ..
T Consensus 129 ~~~~-------~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 201 (462)
T TIGR00562 129 RPAS-------PGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLP 201 (462)
T ss_pred cCCC-------CCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccC
Confidence 0000 011367788888777766666666665544444444444433211 1000 00
Q ss_pred -------h---cCC-ccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 374 -------H---FGG-INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 374 -------~---~~g-~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+ .+. +..+.||++.++++|++.+.. ++|+++++|++|..++++++ |++.+|+++.||+||+|+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 202 QGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSNYT-LELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred ccccccccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCcEE-EEECCCcEEEcCEEEECCCHH
Confidence 0 011 456899999999999998852 78999999999998877764 788888889999999999987
Q ss_pred HHHhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCC
Q 006176 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP 522 (658)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap 522 (658)
.+ ..++++ +|....+.+..+.+. ++.++.+.++.+.+........++.+++ .....+.+.+.+...|...|
T Consensus 279 ~~-~~ll~~--~~~~~~~~l~~l~~~-~~~~v~l~~~~~~~~~~~~~~g~l~~~~-----~~~~~~~~i~~s~~~p~~~p 349 (462)
T TIGR00562 279 AA-AGLLSE--LSNSASSHLDKIHSP-PVANVNLGFPEGSVDGELEGFGFLISRS-----SKFAILGCIFTSKLFPNRAP 349 (462)
T ss_pred HH-HHHhcc--cCHHHHHHHhcCCCC-ceEEEEEEEchHHcCCCCCceEEEccCC-----CCCceEEEEEEccccCCcCC
Confidence 75 567753 666665566656554 4778899998765543322222333321 11111223345555677788
Q ss_pred CCceEEEEEeccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCC
Q 006176 523 EGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPR 601 (658)
Q Consensus 523 ~G~~~l~~~~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~ 601 (658)
+|...++++.... ...+ ++..++++.+.+++.|. ++++ +...++...+ ..|..+|-..+.
T Consensus 350 ~g~~~l~~~~~g~~~~~~-------~~~~~ee~~~~v~~~L~-~~~g-i~~~p~~~~v----------~rw~~a~P~~~~ 410 (462)
T TIGR00562 350 PGKTLLTAYIGGATDESI-------VDLSENEIINIVLRDLK-KVLN-INNEPEMLCV----------TRWHRAIPQYHV 410 (462)
T ss_pred CCcEEEEEEeCCCCCccc-------cCCCHHHHHHHHHHHHH-HHhC-CCCCCcEEEE----------eEccccCCCCCC
Confidence 8888777766542 1122 23346789999999998 7774 4443333322 111222211111
Q ss_pred CCCCCCCC-CCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 006176 602 GTPKGLLG-MPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 602 ~~~~~~~~-~p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~l 651 (658)
+....+.. ++...+..+|||+||+|. .|.||++|+.+|+.+|+.|++.+
T Consensus 411 g~~~~~~~i~~~l~~~~~~l~l~G~~~-~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 411 GHDQRLKEARELLESAYPGVFLTGNSF-EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred ChHHHHHHHHHHHHhhCCCEEEecccc-CCCcHHHHHHHHHHHHHHHHHhh
Confidence 10000000 000113357999999995 57899999999999999998875
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=3.1e-29 Score=276.84 Aligned_cols=426 Identities=15% Similarity=0.148 Sum_probs=249.2
Q ss_pred ccEEEECCChhHHHHHHHHHHc------CCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHh
Q 006176 158 YDAIVIGSGIGGLVAATQLAVK------GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~------g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (658)
.+|+|||||++||+||++|+++ |++|+|+|+++++||+++|.+..|+.+|.|+|++++ ....+.+++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~-----~~~~~~~l~~~ 76 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA-----RNEHVMPLVKD 76 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc-----CCHHHHHHHHH
Confidence 4699999999999999999986 379999999999999999999999999999999875 22347799999
Q ss_pred cCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHH--HHHHHHHHHHHhhhhhhhccchhhHhhh
Q 006176 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLA--FYGECWKIFNALNSLELKSLEEPIYLFG 309 (658)
Q Consensus 232 lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (658)
+|++...........+.+.++....++.... -.+|.....+.. ++....+ ...+ .
T Consensus 77 lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~p~~~~~~~~~~~~~~~~~-~~~~---------------~ 133 (463)
T PRK12416 77 LNLEEEMVYNETGISYIYSDNTLHPIPSDTI-------FGIPMSVESLFSSTLVSTKGK-IVAL---------------K 133 (463)
T ss_pred cCCccceecCCCCceEEEECCeEEECCCCCe-------ecCCCChHHhhcCCcCCHHHH-HHhh---------------h
Confidence 9987655433322222222333222221100 001111000000 0000000 0000 0
Q ss_pred hhhcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH------------h-H----
Q 006176 310 QFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL------------C-D---- 372 (658)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~------------~-~---- 372 (658)
....... ......|+.+++++.+.++..+.++...+....+..+.+.++......+ . .
T Consensus 134 ~~~~~~~-----~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~ 208 (463)
T PRK12416 134 DFITKNK-----EFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKK 208 (463)
T ss_pred hhccCCC-----CCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhh
Confidence 0000000 0123577888888887777666676665544444555555432211000 0 0
Q ss_pred ----hhcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhc
Q 006176 373 ----RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKL 448 (658)
Q Consensus 373 ----~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~L 448 (658)
.....+++++||++.|+++|++.+.+ ++|+++++|++|..+++++ .|++.+|+++.||+||+|+++... ..+
T Consensus 209 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~VI~a~p~~~~-~~l 284 (463)
T PRK12416 209 QFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRY-EISFANHESIQADYVVLAAPHDIA-ETL 284 (463)
T ss_pred ccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEE-EEEECCCCEEEeCEEEECCCHHHH-Hhh
Confidence 00112557899999999999999865 6899999999999888876 487888888999999999986664 577
Q ss_pred cCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEE
Q 006176 449 LKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHIL 528 (658)
Q Consensus 449 l~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l 528 (658)
+..+.++.. ...+. ..++.+++++++.+.+........++.+++ .+...--+.+++...+...+++..++
T Consensus 285 l~~~~l~~~----~~~~~-~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~l~ 354 (463)
T PRK12416 285 LQSNELNEQ----FHTFK-NSSLISIYLGFDILDEQLPADGTGFIVTEN-----SDLHCDACTWTSRKWKHTSGKQKLLV 354 (463)
T ss_pred cCCcchhHH----HhcCC-CCceEEEEEEechhhcCCCCCceEEEeeCC-----CCCeEEEEEeecCCCCCcCCCCeEEE
Confidence 765444432 23333 346789999998664322222222333321 11100112234433444455555555
Q ss_pred EEEecc---ccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCC--
Q 006176 529 HIFTIC---SIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGT-- 603 (658)
Q Consensus 529 ~~~~~~---~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~-- 603 (658)
.++... ..+.|.+ ..+|++.+.++++|+ +++ ++...++...+ ..+..+. -....+.
T Consensus 355 ~~~~~~~~~~~~~~~~-------~~dee~~~~~~~~L~-~~l-G~~~~p~~~~v---------~~W~~a~-P~y~~~~~~ 415 (463)
T PRK12416 355 RMFYKSTNPVYETIKN-------YSEEELVRVALYDIE-KSL-GIKGEPEVVEV---------TNWKDLM-PKYHLEHNQ 415 (463)
T ss_pred EEEeCCCCCCchhhhc-------CCHHHHHHHHHHHHH-HHh-CCCCCceEEEE---------EEccccC-CCcCcCHHH
Confidence 544431 1222222 245888999999999 777 45444444333 1111111 0000000
Q ss_pred CCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 006176 604 PKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 604 ~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~l 651 (658)
....+. +....+.+|||+||++ +.|.||++|+.||+.+|++|++.+
T Consensus 416 ~~~~~~-~~l~~~~~~l~~aG~~-~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 416 AVQSLQ-EKMMNLYPNIYLAGAS-YYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHH-HHHHhhCCCeEEeccc-cccccHHHHHHHHHHHHHHHHHHh
Confidence 000000 0111345899999999 458899999999999999999875
No 13
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=4.7e-28 Score=266.72 Aligned_cols=425 Identities=19% Similarity=0.245 Sum_probs=246.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEe-eCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
+|+|||||++||+||++|+++|++|+|+|+.+++||++.++. .+|+.+|.|.|++.+. ...+.++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-----~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA-----YPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccC-----CchHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999885 5799999999998853 2346789999998643
Q ss_pred EeeCCCeEEEEcC--CCcEEE--EcC--CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 238 VIPDPTTVHFHLP--NDLSVR--VHR--EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 238 ~~~~~~~~~~~~~--~g~~~~--~~~--~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
.........+... ++.... .+. ........+.+..+. ..+ .+.. +....+. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~~~~--------------~~~ 135 (453)
T TIGR02731 76 LQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDM--LTW---PEKI-KFAIGLL--------------PAI 135 (453)
T ss_pred eeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCC--CCH---HHHH-HHHHHhH--------------HHH
Confidence 3222222222211 111111 110 000000000000000 000 0000 0000000 000
Q ss_pred hcChhhhhhHhhcccccHHHHHHHhcCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHhHhh--cCC--ccccCCC-h
Q 006176 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH--FGG--INYPVGG-V 385 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~g--~~~p~gG-~ 385 (658)
.. .......+...++.+++++...++.+. .++...+....+.++.+.++......+.... ..+ ..+..|+ .
T Consensus 136 ~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~ 212 (453)
T TIGR02731 136 VR---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPP 212 (453)
T ss_pred hc---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCCh
Confidence 00 000112345678899998876666654 4555544444445666666554432222111 111 1234444 4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECCCc-----EEEcCEEEECCChhHHHhhccCCCCCC-hHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGR-----EFYAKTIISNATRWDTFGKLLKGEQLP-KEE 458 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~G~-----~i~ad~VV~a~g~~~~~~~Ll~~~~lp-~~~ 458 (658)
+.+++.|.+.++++|++|++|++|++|..+ ++++++|++.+|+ ++.||.||+|+++.. +.++++.. .+ ...
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~-~~~~~~ 290 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQP-WKQMPF 290 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchh-hhcCHH
Confidence 789999999999999999999999999864 5568888887665 799999999999866 56777542 21 222
Q ss_pred HHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccch
Q 006176 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIED 538 (658)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~ 538 (658)
.+....++ ..+.+++++.++++.+.+. ++++..+ +.......+..... ...+++++++.++.. ..+.
T Consensus 291 ~~~~~~~~-~~~~~~v~l~~~~~~~~~~----~~~~~~~------~~~~~~~~~s~~~~-~~~~~~~~l~~~~~~-~~~~ 357 (453)
T TIGR02731 291 FQKLNGLE-GVPVINVHIWFDRKLTTVD----HLLFSRS------PLLSVYADMSETCK-EYADPDKSMLELVFA-PAAD 357 (453)
T ss_pred HHHhhcCC-CCcEEEEEEEEccccCCCC----ceeeeCC------CcceeecchhhhCh-hhcCCCCeEEEEEec-Chhh
Confidence 22333333 3468899999998764322 2222221 11001111111111 123445555554333 2234
Q ss_pred hcccChhhhHHHHHHHHHHHHHHHHHhhCCCC------cCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 006176 539 WEGLAQKDYDAKKELVADEIINRLENKLFPGL------KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (658)
Q Consensus 539 w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l------~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (658)
|.+ ..+|++.+.++++|+ +++|+. .+.+.+.++..|.+ .|...|. .. ..+|.
T Consensus 358 ~~~-------~~~ee~~~~v~~~L~-~~~~~~~~~~~~~~~~~~~~~~~p~a----------~~~~~pg-~~---~~~~~ 415 (453)
T TIGR02731 358 WIG-------RSDEEIIDATMAELA-KLFPNHIKADSPAKILKYKVVKTPRS----------VYKTTPG-RQ---QYRPH 415 (453)
T ss_pred hhc-------CCHHHHHHHHHHHHH-HhCCcccCCCCCceEEEEEEEECCCc----------eeccCCC-Ch---hhCcc
Confidence 433 346889999999999 899852 11344455555543 1212222 11 12455
Q ss_pred CCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHH
Q 006176 613 NTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVA 648 (658)
Q Consensus 613 ~~t~i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il 648 (658)
.++|++||||||+++.++ ++|+||+.||++||++|.
T Consensus 416 ~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 416 QKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 678899999999998443 389999999999999873
No 14
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=8.2e-28 Score=255.16 Aligned_cols=413 Identities=19% Similarity=0.202 Sum_probs=271.4
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCce
Q 006176 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~ 236 (658)
.++|||||++||+||++|++++ ++|+|||+++++||...|+..+|+.||.|+|.+... -..+.++++++|++.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-----~~~~l~li~eLGled 76 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-----KEEILDLIKELGLED 76 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-----hHHHHHHHHHhCcHH
Confidence 5899999999999999999999 999999999999999999999999999999999753 246778999999987
Q ss_pred eEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEK----EGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
..+.......+.+.+|+.+.++....- .+|... ..+..... . +.
T Consensus 77 ~l~~~~~~~~~i~~~gkl~p~P~~~i~-------~ip~~~~~~~~~~~~~~~----------~---------------~~ 124 (444)
T COG1232 77 KLLWNSTARKYIYYDGKLHPIPTPTIL-------GIPLLLLSSEAGLARALQ----------E---------------FI 124 (444)
T ss_pred hhccCCcccceEeeCCcEEECCcccee-------ecCCccccchhHHHHHHH----------h---------------hh
Confidence 776443333345566666665543210 111111 11110100 0 00
Q ss_pred cChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH--h----Hhh------------
Q 006176 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL--C----DRH------------ 374 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~--~----~~~------------ 374 (658)
..+ ......+.++++++++.+.++.+..++........+.+.+..++....-.. . ...
T Consensus 125 ~~~----~~~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~ 200 (444)
T COG1232 125 RPK----SWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQ 200 (444)
T ss_pred ccc----CCCCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccc
Confidence 000 011233567889999998888888787776555555566655544111000 0 000
Q ss_pred ---cCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 375 ---FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 375 ---~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
..-..+++||++.+.++|++.+... |+++++|++|..+....+ +...+|.++.||.||+|++++.+ ..++++
T Consensus 201 ~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~-~~~~~g~~~~~D~VI~t~p~~~l-~~ll~~ 275 (444)
T COG1232 201 SLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKT-IVDVGGEKITADGVISTAPLPEL-ARLLGD 275 (444)
T ss_pred ccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCccE-EEEcCCceEEcceEEEcCCHHHH-HHHcCC
Confidence 0124578999999999999999765 999999999998855443 56788888999999999998775 577776
Q ss_pred CCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEE
Q 006176 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF 531 (658)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~ 531 (658)
... .....+.. ..+..++.++++.+..+...+.+++++.++ .++ ...+.++|...|...|+|++++.+.
T Consensus 276 ~~~----~~~~~~~~-~~s~~~vv~~~~~~~~~~~~~~~g~~iad~-----~~~-~~a~~~~S~~~p~~~p~g~~ll~~~ 344 (444)
T COG1232 276 EAV----SKAAKELQ-YTSVVTVVVGLDEKDNPALPDGYGLLIADD-----DPY-ILAITFHSNKWPHEAPEGKTLLRVE 344 (444)
T ss_pred cch----hhhhhhcc-ccceEEEEEEeccccccCCCCceEEEEecC-----CCc-ceeEEEecccCCCCCCCCcEEEEEE
Confidence 211 12333333 446678888888763333334466766653 232 2446778899999999999998887
Q ss_pred eccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCc--ccCCCCCCCCCCCC
Q 006176 532 TICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT--YGPMPRGTPKGLLG 609 (658)
Q Consensus 532 ~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~--yg~~p~~~~~~~~~ 609 (658)
.....+.| .+...+|++++.+++.|. ++++...+.. ..++ ..+..+. |..-....... +
T Consensus 345 ~~~~g~~~------~~~~~dee~~~~~l~~L~-~~~~~~~~~~-~~~v---------~r~~~~~PqY~vG~~~~~~~-i- 405 (444)
T COG1232 345 FGGPGDES------VSTMSDEELVAAVLDDLK-KLGGINGDPV-FVEV---------TRWKYAMPQYEVGHLDRLEP-I- 405 (444)
T ss_pred eecCCCcc------hhccCHHHHHHHHHHHHH-HHcCcCcchh-heee---------eeccccCCccchhHHHHHHH-H-
Confidence 76543333 234457999999999999 8886554433 2222 1222221 21100000000 0
Q ss_pred CCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 006176 610 MPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (658)
Q Consensus 610 ~p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il 648 (658)
+....+..+|++.+|.| +.|.|+++|+.+|..||+.++
T Consensus 406 r~~l~~~y~gi~~~G~~-~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 406 RAALKGAYPGIKSVGRY-GEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HHhhccccCCeEEeccC-CCCCCchHHHHHHHHHHHHhh
Confidence 11112234799999998 566899999999999999875
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=2.9e-27 Score=263.58 Aligned_cols=427 Identities=19% Similarity=0.184 Sum_probs=250.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (658)
..++||+|||||++||+||++|+++ |++|+|+|+++++||++.|...+|+.+|.|+|++.. ....+.++++. |
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~-----~~~~~~~l~~~-g 83 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP-----SDPELTSAVDS-G 83 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc-----CcHHHHHHHHc-C
Confidence 4567999999999999999999999 999999999999999999999999999999999974 22345556555 7
Q ss_pred CceeEe-eCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 234 CEMEVI-PDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
+..... ..+....+.+.+|....++.+...+. ...+-.....+... ... +...
T Consensus 84 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~---~~~~~~~~~~~~~~-------~~~---~~~~------------- 137 (496)
T PLN02576 84 LRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLP---TFDLLSAPGKIRAG-------LGA---FGWK------------- 137 (496)
T ss_pred ChhheecCCCCceEEEEECCEEEEcCCChHHhc---CcCcCChhHHHHHh-------HHH---hhcc-------------
Confidence 654332 22222233334565555444332211 00000000000000 000 0000
Q ss_pred cChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHh---------------Hh----
Q 006176 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC---------------DR---- 373 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~---------------~~---- 373 (658)
.+. ......++.+++++.+.++....++........+.++.+.++......+. ..
T Consensus 138 -~~~-----~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~ 211 (496)
T PLN02576 138 -RPP-----PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAK 211 (496)
T ss_pred -CCC-----CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhc
Confidence 000 00225678888988887777777777665554455555555432211000 00
Q ss_pred ---------------hcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE--CCCc-EEEcCEE
Q 006176 374 ---------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTI 435 (658)
Q Consensus 374 ---------------~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~--~~G~-~i~ad~V 435 (658)
.....+.++||++.|+++|++.+.+ ++|++|++|++|..++++.+.|++ .+|+ ++.||+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~V 289 (496)
T PLN02576 212 KNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAV 289 (496)
T ss_pred ccccccccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEE
Confidence 0012356799999999999987721 589999999999987765122443 3553 6999999
Q ss_pred EECCChhHHHhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCC------CCcceeeecchhhhhccCCCceE
Q 006176 436 ISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD------TDCHHFVLEDDWNRLEEPYGSIF 509 (658)
Q Consensus 436 V~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 509 (658)
|+|+++..+ ..++.. .++...+.+..+.+. ++.++++.++.+.|..+ ......+.... .....+.
T Consensus 290 I~a~P~~~l-~~ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~-----~~~~~lg 360 (496)
T PLN02576 290 VMTAPLYVV-SEMLRP--KSPAAADALPEFYYP-PVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRK-----QGVKTLG 360 (496)
T ss_pred EECCCHHHH-HHHhcc--cCHHHHHHhccCCCC-ceEEEEEEEchHHcccccccCCCCCceEEEccCC-----CCCceEE
Confidence 999987765 466653 444445555555444 46788999988765541 11111111110 1111122
Q ss_pred EeccCCCCCCCCCCCceEEEEEeccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCc-CcEEEEEecChhHHHH
Q 006176 510 LSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRR 587 (658)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~~~tP~~~~~ 587 (658)
+.+.+...|.+.|++...+..++... ...+. +..+|++.+.++++|. ++++.-. ...+...+
T Consensus 361 ~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~-------~~s~ee~~~~~~~~L~-~~~g~~~~~~p~~~~~-------- 424 (496)
T PLN02576 361 TIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIA-------SASEEELVEAVDRDLR-KLLLKPGAPPPKVVGV-------- 424 (496)
T ss_pred EEeecCcCCCCCCCCCEEEEEEECCCCCcccc-------cCCHHHHHHHHHHHHH-HHhCCCCCCCCcEEEE--------
Confidence 33445556777787776666665532 22222 2346788999999998 7775321 11122111
Q ss_pred HhcCCCCcccCCCCCCCCCCCCCCCCC---CCC--CcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhc
Q 006176 588 YLARDQGTYGPMPRGTPKGLLGMPFNT---TGI--NGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 588 ~~~~~~G~yg~~p~~~~~~~~~~p~~~---t~i--~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
..+ ..++-..+.+... .++... ... +|||+||+|+. |.|+++|+.||+.+|++|++.+.
T Consensus 425 -~~w-~~a~P~~~~g~~~---~~~~~~~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 425 -RVW-PKAIPQYLLGHLD---VLEAAEKMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred -eEc-CcccCCCCcCHHH---HHHHHHHHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHHHHh
Confidence 011 1111101100000 000000 122 69999999974 78999999999999999998764
No 16
>PLN02268 probable polyamine oxidase
Probab=99.96 E-value=2.1e-27 Score=260.27 Aligned_cols=418 Identities=19% Similarity=0.179 Sum_probs=235.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
.+|+|||||++||+||+.|.++|++|+|+|+++++||++.|....|+.+|.|++++++... .+.+.++++++|++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~---~~~~~~l~~~lgl~~~ 77 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCN---ENPLAPLIGRLGLPLY 77 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCC---CchHHHHHHHhCCceE
Confidence 3799999999999999999999999999999999999999988889999999999976321 1236789999998654
Q ss_pred EeeCCCeEEEEcCCC-cEEEEc-CCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcCh
Q 006176 238 VIPDPTTVHFHLPND-LSVRVH-REYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRP 315 (658)
Q Consensus 238 ~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (658)
......... +.++ ...... .... .+| ...+..+.....++........
T Consensus 78 ~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~------------------ 127 (435)
T PLN02268 78 RTSGDNSVL--YDHDLESYALFDMDGN--------QVP--QELVTKVGETFERILEETEKVR------------------ 127 (435)
T ss_pred eccCCcccc--ccccccccceecCCCC--------CCC--HHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 221111111 1111 000000 0000 000 0111111111111111000000
Q ss_pred hhhhhHhhcccccHHHHHHHhcCCH-------HHHHHHhhhh---hhhccCCCCCchHHHHHHHHhHhhcCCccccCCCh
Q 006176 316 LECLTLAYYLPQNAGNIARKYIKDP-------QLLSFIDAEC---FIVSTINALQTPMINASMVLCDRHFGGINYPVGGV 385 (658)
Q Consensus 316 ~~~~~~~~~~~~s~~~~~~~~~~~~-------~l~~~l~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~ 385 (658)
.......|+.+++++++... .-+.++.... ..+.+.++.+.+...... .....++..++.+|+
T Consensus 128 -----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~~~~g~~~~~~~G~ 200 (435)
T PLN02268 128 -----DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EELLEGGHGLMVRGY 200 (435)
T ss_pred -----hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--ccccCCCceeecCCH
Confidence 00112334445444433211 1122221110 011122333333221100 001122334677899
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc-CCCCCChHHHHHHHh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL-KGEQLPKEEENFQKL 464 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll-~~~~lp~~~~~~~~~ 464 (658)
+.++++|.+ |++|++|++|++|...+++++ |++.+|+++.||+||+|+++..+-..++ -.+.+|..+++.+..
T Consensus 201 ~~l~~~l~~-----~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~ 274 (435)
T PLN02268 201 DPVINTLAK-----GLDIRLNHRVTKIVRRYNGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISD 274 (435)
T ss_pred HHHHHHHhc-----cCceeCCCeeEEEEEcCCcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHh
Confidence 999998865 457999999999998877765 8888898899999999998776422222 234688887777777
Q ss_pred hccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccc-cchhcccC
Q 006176 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLA 543 (658)
Q Consensus 465 ~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~l~ 543 (658)
+.++ ...++.+.++.++|+.. .....+.+.. ... ..+... ..+.|..++.++.... ...+.
T Consensus 275 ~~~g-~~~Kv~l~f~~~fw~~~-~~~g~~~~~~-----~~~-~~~~~~-------~~~~g~~~l~~~~~g~~a~~~~--- 336 (435)
T PLN02268 275 LGVG-IENKIALHFDSVFWPNV-EFLGVVAPTS-----YGC-SYFLNL-------HKATGHPVLVYMPAGRLARDIE--- 336 (435)
T ss_pred CCcc-ceeEEEEEeCCCCCCCC-ceeeccCCCC-----CCc-eEEEec-------ccCCCCCEEEEEeccHHHHHHH---
Confidence 6554 46689999999887642 1111111110 010 011111 1124555666555432 22232
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEe
Q 006176 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCV 623 (658)
Q Consensus 544 ~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLyla 623 (658)
+..++++.+.+++.|. +++|..... +...+ ..|.. .....|+|...+.+..... .+..+.|+++||||
T Consensus 337 ----~~~~~e~~~~v~~~L~-~~~~~~~~p-~~~~~---~~W~~-dp~~~G~~~~~~~g~~~~~--~~~l~~p~~~l~FA 404 (435)
T PLN02268 337 ----KLSDEAAANFAMSQLK-KMLPDATEP-VQYLV---SRWGS-DPNSLGCYSYDLVGKPHDL--YERLRAPVDNLFFA 404 (435)
T ss_pred ----hCCHHHHHHHHHHHHH-HHcCCCCCc-cEEEe---cccCC-CCCCCccCCCCCCCCCHHH--HHHHhCCCCCeEEe
Confidence 2345788999999999 888754322 21111 12222 1223566654332221111 12345778999999
Q ss_pred CCCccCC--CChhHHhhhHHHHHHHHHHHh
Q 006176 624 GDSCFPG--QGVIAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 624 G~~~~pG--~Gv~ga~~sG~~aA~~Il~~l 651 (658)
|++|... +.|+||+.||++||++|++.|
T Consensus 405 Ge~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 405 GEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred eccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9998653 369999999999999998764
No 17
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=2.9e-27 Score=262.42 Aligned_cols=424 Identities=16% Similarity=0.126 Sum_probs=251.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCc
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~ 235 (658)
+++||+|||||++||+||++|+++|++|+|+|+.+++||++.|...+|+.+|.|+|+++. ....+.+++++++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~-----~~~~~~~l~~~l~~~ 77 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS-----KSPEVMDLWNEILPD 77 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc-----CCHHHHHHHHHhcCC
Confidence 467999999999999999999999999999999999999999999999999999999875 234577888888752
Q ss_pred eeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcCh
Q 006176 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRP 315 (658)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (658)
...........+.+ +|....++.....++. ..+ +........ ..+. .....
T Consensus 78 ~~~~~~~~~~~~~~-~g~~~~~p~~~~~~l~----~~~-----~~~~~~~~~---~~~~---------------~~~~~- 128 (479)
T PRK07208 78 DDFLLRPRLSRIYY-RGKFFDYPLKAFDALK----NLG-----LWRTAKCGA---SYLK---------------ARLRP- 128 (479)
T ss_pred CccccccccceEEE-CCEEecCCcchhHHHH----hCC-----HhHHHHHHH---HHHH---------------HhcCC-
Confidence 22221111111111 3433333222111110 000 000000000 0000 00000
Q ss_pred hhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHH-----------HH--HhH----------
Q 006176 316 LECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS-----------MV--LCD---------- 372 (658)
Q Consensus 316 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~-----------~~--~~~---------- 372 (658)
.....++.+++++.+.++....++..++....+.++.+.++.+.. +. +..
T Consensus 129 -------~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (479)
T PRK07208 129 -------RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKE 201 (479)
T ss_pred -------CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCC
Confidence 012467888888877777777777776655555566665543211 00 000
Q ss_pred ---hhcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCE-EEEEEE--CCCc--EEEcCEEEECCChhHH
Q 006176 373 ---RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL--SDGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 373 ---~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~-v~gV~~--~~G~--~i~ad~VV~a~g~~~~ 444 (658)
.....+.+|+||++.++++|.+.+++.|++|++|++|++|..++++ ++.+.. .+|+ ++.||+||+|+++..+
T Consensus 202 ~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l 281 (479)
T PRK07208 202 VETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL 281 (479)
T ss_pred ccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH
Confidence 0012456889999999999999999999999999999999998765 344443 2353 5889999999998876
Q ss_pred HhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCC
Q 006176 445 FGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEG 524 (658)
Q Consensus 445 ~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G 524 (658)
. .++.+ .+|....+....+.+. +..+++++++++...+ .+++++.+. ..+++. +...+..+|..+|+|
T Consensus 282 ~-~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~---~~~~~~~~~----~~~~~r--~~~~~~~~~~~~p~g 349 (479)
T PRK07208 282 V-AALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNLFP---DNWIYIHDP----DVKVGR--LQNFNNWSPYLVPDG 349 (479)
T ss_pred H-HhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCCCC---CceEEecCC----CCccce--ecccccCCcccCCCC
Confidence 5 45553 4666555555555444 5778899998764222 233333321 011211 223455567788998
Q ss_pred ce-EEEEEec--cccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCC
Q 006176 525 HH-ILHIFTI--CSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPR 601 (658)
Q Consensus 525 ~~-~l~~~~~--~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~ 601 (658)
++ .+.+..+ .....| ...+|++++.+++.|. ++.+.-.+.++..++. .+ ..+|.....
T Consensus 350 ~~~~l~~~~~~~~~~~~~--------~~~deel~~~~~~~L~-~l~~~~~~~~~~~~v~---------r~-~~a~P~y~~ 410 (479)
T PRK07208 350 RDTWLGLEYFCFEGDDLW--------NMSDEDLIALAIQELA-RLGLIRPADVEDGFVV---------RV-PKAYPVYDG 410 (479)
T ss_pred CceEEEEEEEccCCCccc--------cCCHHHHHHHHHHHHH-HcCCCChhheeEEEEE---------Ee-cCcccCCCc
Confidence 75 2222111 111222 2346789999999999 7644114444443321 01 111111000
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeCCCc-cCCCChhHHhhhHHHHHHHHHHHh
Q 006176 602 GTPKGLLGMPFNTTGINGLYCVGDSC-FPGQGVIAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 602 ~~~~~~~~~p~~~t~i~gLylaG~~~-~pG~Gv~ga~~sG~~aA~~Il~~l 651 (658)
+............++.+|||++|.++ +.-..+.+|+.||..+|+.|++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 411 TYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred hHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 00000000000225678999999765 323589999999999999998764
No 18
>PLN02676 polyamine oxidase
Probab=99.96 E-value=1.8e-26 Score=253.77 Aligned_cols=431 Identities=13% Similarity=0.114 Sum_probs=241.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (658)
...+||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++++.++... ..+.+.++++++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~-~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGP-ESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCc-ccChHHHHHHhcC
Confidence 346899999999999999999999998 59999999999999999888999999999999764321 2345678888999
Q ss_pred CceeEeeCCC-eEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 234 CEMEVIPDPT-TVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
+.....+.+. ...+...+|.... ......+ ...+....+....... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~---------- 153 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQDGGLYP-----KKVVQKS-----------MKVADASDEFGENLSI---SLSA---------- 153 (487)
T ss_pred CceeecCccccceeEECCCCCCCC-----HHHHHHH-----------HHHHHHHHHHHHHHHH---hhcc----------
Confidence 8754322111 1222222333221 1111111 1111111110000000 0000
Q ss_pred cChhhhhhHhhcccccH--HHHHHHhcCCH---HHHHHHhhhhhhhccCCCCCchHHHHHH-HHhHhhcCCcccc--CCC
Q 006176 313 KRPLECLTLAYYLPQNA--GNIARKYIKDP---QLLSFIDAECFIVSTINALQTPMINASM-VLCDRHFGGINYP--VGG 384 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~s~--~~~~~~~~~~~---~l~~~l~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~p--~gG 384 (658)
......+. .+.+.+..... ....++.. ....+..+...++..... .......+..++. ++|
T Consensus 154 ---------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G 222 (487)
T PLN02676 154 ---------KKAVDISILTAQRLFGQVPKTPLEMVIDYYNY--DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRG 222 (487)
T ss_pred ---------cCCCCccHHHHHHHHhhCCCCHHHHHHHHHhc--cceeccCccccchhhcCcccccccCCCceEEeecCCC
Confidence 00001111 11122222111 11111111 011123333343322110 0000011122333 689
Q ss_pred hHHHHHHHHHHHHHc------CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChH
Q 006176 385 VGGIAKSLAKGLADK------GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKE 457 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~------G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~ 457 (658)
+++|++.|++.+.++ +.+|++|++|++|..+++.|+ |++.+|+++.||+||+|+|+..+-. .+.-.+.||..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~ 301 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence 999999999987543 357999999999999887765 8899998999999999998765421 13334579987
Q ss_pred HHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccc-c
Q 006176 458 EENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-I 536 (658)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~-~ 536 (658)
+++.+..+..+ ...++++.+++++|+.+.....+.+.+. ...+..++.. .+. .++|..++.++...+ .
T Consensus 302 k~~ai~~l~~g-~~~Kv~l~f~~~FW~~~~~~~~~~~~~~----~~~~~~~~~~----~~~--~~~~~~~l~~~~~g~~a 370 (487)
T PLN02676 302 KIEAIYQFDMA-VYTKIFLKFPYKFWPSGPGTEFFLYAHE----RRGYYPFWQH----LEN--EYPGSNVLFVTVTDEES 370 (487)
T ss_pred HHHHHHhCCce-eeEEEEEEeCCCCCCCCCCceeeeeecc----ccccchhhhh----ccc--CCCCCCEEEEEechHHH
Confidence 77777666544 4679999999999876422111112110 0111111111 111 123444555554432 2
Q ss_pred chhcccChhhhHHHHHHHHHHHHHHHHHhhCCC-CcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCC
Q 006176 537 EDWEGLAQKDYDAKKELVADEIINRLENKLFPG-LKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTT 615 (658)
Q Consensus 537 ~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~-l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t 615 (658)
..|..+ .+++..+.+++.|. ++|+. ... ++.... .+|.. .....|+|...+.+..... .+..+.
T Consensus 371 ~~~~~~-------s~e~~~~~vl~~L~-~~~g~~~~~-p~~~~~---~~W~~-dp~s~Gsys~~~pG~~~~~--~~~L~~ 435 (487)
T PLN02676 371 RRIEQQ-------PDSETKAEIMEVLR-KMFGPNIPE-ATDILV---PRWWS-NRFFKGSYSNWPIGVSRYE--FDQIRA 435 (487)
T ss_pred HHHHhC-------CHHHHHHHHHHHHH-HHhCCCCCC-cceEEe---cccCC-CCCCCcccCCCCCCCChhH--HHHHhC
Confidence 233332 24677888999998 77752 221 111111 12322 1233577765543322111 123356
Q ss_pred CCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhcc
Q 006176 616 GINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGN 653 (658)
Q Consensus 616 ~i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg~ 653 (658)
|+++|||||+.|... +.|+||+.||++||++|++.+..
T Consensus 436 P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 436 PVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 789999999988653 46999999999999999998853
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=99.96 E-value=8.6e-26 Score=254.54 Aligned_cols=416 Identities=16% Similarity=0.171 Sum_probs=238.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeC--C--eEEccccccccCCcCCCchHHHHHHHHh
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--G--YTFDVGSSVMFGFSDKGNLNLITQALAA 231 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--g--~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (658)
..+||+|||||++||+||..|+++|++|+|+|+.+++||++.|.... | +.+|.|++++++... +.+..+.++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~----npl~~la~~ 234 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHA----NPLGVLARQ 234 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccccc----chHHHHHHH
Confidence 46799999999999999999999999999999999999999998864 3 489999999997532 346678888
Q ss_pred cCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 232 lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
+|+++.... ....++.++|..+....+. .+.. .+..+++..........
T Consensus 235 lgl~~~~~~--~~~~~~~~~G~~v~~~~~~-----~~~~-------~~~~~l~~~~~l~~~~~----------------- 283 (738)
T PLN02529 235 LSIPLHKVR--DNCPLYKPDGALVDKEIDS-----NIEF-------IFNKLLDKVTELRQIMG----------------- 283 (738)
T ss_pred hCCCccccC--CCceEEeCCCcCcchhhhh-----hHHH-------HHHHHHHHHHHHHHhcc-----------------
Confidence 898765432 2233444566443211110 0000 00111111100000000
Q ss_pred hcChhhhhhHhhcccccHHHHHHHhc------CCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHh---HhhcCCccccC
Q 006176 312 FKRPLECLTLAYYLPQNAGNIARKYI------KDPQLLSFIDAECFIVSTINALQTPMINASMVLC---DRHFGGINYPV 382 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~------~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~~g~~~p~ 382 (658)
......++++++++.. .++.-+.+++..........+...+.+....... ....+..+.+.
T Consensus 284 ----------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~ 353 (738)
T PLN02529 284 ----------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLA 353 (738)
T ss_pred ----------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEEC
Confidence 0011233444443332 1222233333222111111222222222111111 01123345688
Q ss_pred CChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHH
Q 006176 383 GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENF 461 (658)
Q Consensus 383 gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~~~~~ 461 (658)
||+++|+++|++.+ +|++|++|++|..++++++ |+. +++++.||+||+|+++..+.. .+.-.+++|..+.+.
T Consensus 354 GG~~~Li~aLA~~L-----~IrLnt~V~~I~~~~dGVt-V~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~A 426 (738)
T PLN02529 354 GGNWRLINALCEGV-----PIFYGKTVDTIKYGNDGVE-VIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAA 426 (738)
T ss_pred CcHHHHHHHHHhcC-----CEEcCCceeEEEEcCCeEE-EEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHH
Confidence 99999999998754 6999999999999887765 654 455799999999999876532 222234689888777
Q ss_pred HHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccc-cchhc
Q 006176 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWE 540 (658)
Q Consensus 462 ~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~ 540 (658)
+..+.+++ ..+|++.+++++|+.+......+.... ...+.+++... .. .+.|..++..++... +..|.
T Consensus 427 I~rL~yG~-v~KV~L~F~~~FW~~~~~~fG~l~~~~-----~~~g~~~~~~~----~~-~~~ggpvLvafv~G~~A~~le 495 (738)
T PLN02529 427 IDRLGFGL-LNKVAMVFPSVFWGEELDTFGCLNESS-----NKRGEFFLFYG----YH-TVSGGPALVALVAGEAAQRFE 495 (738)
T ss_pred HHcCCCce-eEEEEEEeCCccccCCCCceEEEeccC-----CCCceEEEEec----CC-CCCCCCEEEEEECchhhHHHh
Confidence 77776654 679999999998865433222221110 01111222111 11 122334555555432 22333
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHHhhCCC--C-----cCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCC
Q 006176 541 GLAQKDYDAKKELVADEIINRLENKLFPG--L-----KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 613 (658)
Q Consensus 541 ~l~~~~~~~~ke~~~~~il~~L~~~~~P~--l-----~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~ 613 (658)
.+ .++++++.+++.|. ++++. . ...+...|...| ...|+|...+.+...... ...
T Consensus 496 ~l-------sdeeii~~vl~~L~-~ifgp~~~~vp~Pi~~v~t~W~~DP--------~s~GsYS~~~~g~~~~d~--~~L 557 (738)
T PLN02529 496 NT-------DPSTLLHRVLSVLR-GIYNPKGINVPDPIQTICTRWGSDP--------LSYGSYSHVRVQSSGSDY--DIL 557 (738)
T ss_pred cC-------CHHHHHHHHHHHHH-HHhCccccccCCceEEEEccCCcCC--------CCCCCcccCCCCCchhHH--HHH
Confidence 22 34678889999998 77642 2 112222222222 235666643321110000 011
Q ss_pred CCC-CCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhc
Q 006176 614 TTG-INGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 614 ~t~-i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
..+ .++|||||++|.++ +.|+||+.||++||++|++.++
T Consensus 558 a~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 558 AESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred hCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 233 47899999998664 3799999999999999998774
No 20
>PLN02568 polyamine oxidase
Probab=99.95 E-value=9.4e-26 Score=249.80 Aligned_cols=447 Identities=13% Similarity=0.102 Sum_probs=236.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-----CeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHH
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKG-----ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g-----~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (658)
..+||+|||||++||+||.+|++.| ++|+|+|+++++||++.|.+..|+.+|.|++++++... +.+.++++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~----~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGG----SPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCC----CHHHHHHH
Confidence 3579999999999999999999988 89999999999999999999999999999999998642 35778888
Q ss_pred hcCCceeEeeCC------CeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-Hh-hhhhhhccc
Q 006176 231 AVGCEMEVIPDP------TTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFN-AL-NSLELKSLE 302 (658)
Q Consensus 231 ~lG~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 302 (658)
++|+.....+.. ....+...+|..+. ....+. +..++........ .. .........
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d 143 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVD-----PSIVES-----------ISTLFRGLMDDAQGKLIEPSEVDEVD 143 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCC-----HHHHHH-----------HHHHHHHHHHHhhccccccccccccc
Confidence 999753221100 01112222332111 011111 1111111110000 00 000000000
Q ss_pred hhhHhhhhhhcChhhhhhHhhcccccHHHHHHHhcC-------C----------H--H-HHHHHhhhhhhhc-cCCCCCc
Q 006176 303 EPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIK-------D----------P--Q-LLSFIDAECFIVS-TINALQT 361 (658)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-------~----------~--~-l~~~l~~~~~~~~-~~~~~~~ 361 (658)
+..+.....+.. ..-...++++++++.+. + + . ....+.....+.. .......
T Consensus 144 -----~~~~~~~~~~~~--~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l 216 (539)
T PLN02568 144 -----FVKLAAKAARVC--ESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDL 216 (539)
T ss_pred -----ccccchhccchh--ccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccH
Confidence 000000000000 00000122222222110 0 0 0 0111111111000 0011111
Q ss_pred hHHHHHHH-HhHhhcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCC
Q 006176 362 PMINASMV-LCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNAT 440 (658)
Q Consensus 362 p~~~~~~~-~~~~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g 440 (658)
+....... ......+..+.+.||++.|+++|++.+. +.+|++|++|++|..+++.++ |.+.+|+++.||+||+|++
T Consensus 217 s~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~-V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 217 STLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVK-LHFADGSTMTADHVIVTVS 293 (539)
T ss_pred hhccccccCcceecCCCeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEE-EEEcCCCEEEcCEEEEcCC
Confidence 11100000 0001123456789999999999999884 357999999999999887765 8888998899999999999
Q ss_pred hhHHHhh-----ccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCC-----Ccceeeecchhhhhc-cCCCceE
Q 006176 441 RWDTFGK-----LLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDT-----DCHHFVLEDDWNRLE-EPYGSIF 509 (658)
Q Consensus 441 ~~~~~~~-----Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~ 509 (658)
+..+... +.-.+.||..+.+.+..+.++ ...+|++.+++++|+.+. ....+++.++-.... ... ..+
T Consensus 294 l~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g-~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 371 (539)
T PLN02568 294 LGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFG-VVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKI-PWW 371 (539)
T ss_pred HHHHhhccccccceecCCCCHHHHHHHHhcCCc-eeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccc-cch
Confidence 8765321 222347998877777766554 467999999999876421 111112111100000 000 011
Q ss_pred EeccCCCCCCCCCCCceEEEEEeccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCC------------------
Q 006176 510 LSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGL------------------ 570 (658)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l------------------ 570 (658)
........+ ...+..++..++... +..|..+ .++++++.+++.|. ++++.-
T Consensus 372 ~~~~~~~~~--~~~~~~vL~~~~~G~~A~~~e~l-------~~~~~~~~~~~~L~-~~~g~~~~~~~~~~~~~~~~~~~~ 441 (539)
T PLN02568 372 MRRTASICP--IHKNSSVLLSWFAGKEALELEKL-------SDEEIIRGVQTTLS-SFLKRRVAGLGSQSHPLCNGGASS 441 (539)
T ss_pred hhccccccc--cCCCCCEEEEEeccHHHHHHHcC-------CHHHHHHHHHHHHH-HHcCCcccCccccccccccccccc
Confidence 100000011 112555666666543 3334333 24678889999998 777521
Q ss_pred --------cCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCC---CCCCCCCC--------CCCCCcEEEeCCCccCC-
Q 006176 571 --------KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPK---GLLGMPFN--------TTGINGLYCVGDSCFPG- 630 (658)
Q Consensus 571 --------~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~---~~~~~p~~--------~t~i~gLylaG~~~~pG- 630 (658)
...++..|... ....|+|...+.+... ..+..|-. ..+...|||||..|...
T Consensus 442 ~~~~~~~p~~~~~t~W~~d--------p~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~ 513 (539)
T PLN02568 442 NDGSRWKFVKVLKSKWGTD--------PLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTH 513 (539)
T ss_pred ccccCCCCceEEeCCCCCC--------CccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCc
Confidence 11112222222 2236777755433211 11222211 12334799999998664
Q ss_pred -CChhHHhhhHHHHHHHHHHHhc
Q 006176 631 -QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 631 -~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
+.|+||++||+++|++|++.+.
T Consensus 514 ~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 514 YSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999998764
No 21
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.95 E-value=1.3e-25 Score=244.96 Aligned_cols=403 Identities=18% Similarity=0.202 Sum_probs=237.5
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeE--EccccccccCCcCCCchHHHHHHHHhcCCceeEeeCCCeEEEE
Q 006176 171 VAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT--FDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFH 248 (658)
Q Consensus 171 ~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~--~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~~~~~~~~~~~~ 248 (658)
+||++|+++|++|+|+|+.+++||++.|+..+|+. +|.|+|++++. ...+.++++++|++...........+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~-----~~~~~~l~~~lgl~~~~~~~~~~~~~~ 75 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGA-----YTNLLALLRRIGAEPRLQGPRLPLPFY 75 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcc-----cHHHHHHHHHhCCchhhhcccCCccee
Confidence 48999999999999999999999999999988654 99999999852 345789999999875433111122233
Q ss_pred cCCCcEEEEcC----CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcChhhhhhHhhc
Q 006176 249 LPNDLSVRVHR----EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYY 324 (658)
Q Consensus 249 ~~~g~~~~~~~----~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (658)
.+++....+.. ........+............++...... +... ....+
T Consensus 76 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------------~~~~-----~~~~~ 128 (419)
T TIGR03467 76 DPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLA----------------------LRRT-----RFRAL 128 (419)
T ss_pred cCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHH----------------------HHhc-----Ccccc
Confidence 33333211110 01111111111111111111111100000 0000 00123
Q ss_pred ccccHHHHHHHhcCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHhHhh-----cCCccccCCChHHHH-HHHHHHHH
Q 006176 325 LPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH-----FGGINYPVGGVGGIA-KSLAKGLA 397 (658)
Q Consensus 325 ~~~s~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~g~~~p~gG~~~l~-~~L~~~l~ 397 (658)
...++.+++++++.++.+. .+++..+....+..+.+.++......+.... ..+.++|+||++++. +.|++.++
T Consensus 129 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 129 DDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 4678899999887665544 4556555444456667777654443322111 124678999987765 55999999
Q ss_pred HcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCceEEEEEe
Q 006176 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (658)
Q Consensus 398 ~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~ 477 (658)
+.|++|++|++|++|..++++++.+...+|+++.||.||+|+++..+ ..+++.+ ...+.+..+.+. ++.++++.
T Consensus 209 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~----~~~~~l~~~~~~-~~~~v~l~ 282 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE----DLGALLTALGYS-PITTVHLR 282 (419)
T ss_pred HcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc----hHHHHHhhcCCc-ceEEEEEE
Confidence 99999999999999999888765333356778999999999998775 4666541 233344555554 46689999
Q ss_pred eecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHHHHHHHHHH
Q 006176 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (658)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~ 557 (658)
+++++|.+. ....+ .. .+...++ . .+ .. ++....+.+++.. ...+. +..+|++.+.
T Consensus 283 ~~~~~~~~~-~~~~~-~~-------~~~~~~~-~-~~----~~-~~~~~~~~~~~~~-~~~~~-------~~~~e~~~~~ 338 (419)
T TIGR03467 283 LDRAVRLPA-PMVGL-VG-------GLAQWLF-D-RG----QL-AGEPGYLAVVISA-ARDLV-------DLPREELADR 338 (419)
T ss_pred eCCCcCCCC-Ceeee-cC-------CceeEEE-E-CC----cC-CCCCCEEEEEEec-chhhc-------cCCHHHHHHH
Confidence 998875332 11111 11 1111111 1 11 11 1111233333332 22222 2246889999
Q ss_pred HHHHHHHhhCCCCcC-cEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCC--CChh
Q 006176 558 IINRLENKLFPGLKQ-SIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPG--QGVI 634 (658)
Q Consensus 558 il~~L~~~~~P~l~~-~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG--~Gv~ 634 (658)
++++|+ +++|.... .++...+ ..+..+.|...|... ..+|...++++|||||||++++| ..|+
T Consensus 339 ~l~~l~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~----~~~~~~~~~~~~l~~aGd~~~~~~~~~~e 404 (419)
T TIGR03467 339 IVAELR-RAFPRVAGAKPLWARV---------IKEKRATFAATPGLN----RLRPGARTPWPNLFLAGDWTATGWPATME 404 (419)
T ss_pred HHHHHH-HhcCccccCCccceEE---------EEccCCccccCCccc----ccCCCCCCCcCCEEEecccccCCCcchHH
Confidence 999999 88986532 2222111 222234444333211 12455567889999999999875 3689
Q ss_pred HHhhhHHHHHHHHHH
Q 006176 635 AVAFSGVMCAHRVAA 649 (658)
Q Consensus 635 ga~~sG~~aA~~Il~ 649 (658)
||+.||++||++|++
T Consensus 405 gA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 405 GAVRSGYQAAEAVLK 419 (419)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999863
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.95 E-value=4.1e-25 Score=249.95 Aligned_cols=420 Identities=19% Similarity=0.223 Sum_probs=237.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCe----EEccccccccCCcCCCchHHHHHHHH
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGY----TFDVGSSVMFGFSDKGNLNLITQALA 230 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~----~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (658)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....|+ .+|.|++++++.. .+.+..+++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~----~npl~~l~~ 311 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGIN----GNPLGVLAR 311 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCC----ccHHHHHHH
Confidence 34689999999999999999999999999999999999999999887653 6899999998753 234577888
Q ss_pred hcCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhh
Q 006176 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (658)
Q Consensus 231 ~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (658)
++|++...... ...+..++|..+....+ .... ..+..++....+....... ..+.
T Consensus 312 ~lgl~~~~~~~--~~~~~~~dG~~~~~~~~--~~v~----------~~f~~lL~~~~klr~~~~~-~~~~---------- 366 (808)
T PLN02328 312 QLGLPLHKVRD--ICPLYLPDGKAVDAEID--SKIE----------ASFNKLLDRVCKLRQAMIE-EVKS---------- 366 (808)
T ss_pred HcCCceEecCC--CceEEeCCCcCcchhhh--hhHH----------HHHHHHHHHHHHHHHhhhh-cccc----------
Confidence 99987655432 23344566654321110 0000 0011111111110000000 0000
Q ss_pred hhcChhhhhhHhhcccccHHHHHHHh------cCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH-h--HhhcCCcccc
Q 006176 311 FFKRPLECLTLAYYLPQNAGNIARKY------IKDPQLLSFIDAECFIVSTINALQTPMINASMVL-C--DRHFGGINYP 381 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~-~--~~~~~g~~~p 381 (658)
...+++++++++ ..++.-+.+++................+...... . ....+..+.+
T Consensus 367 --------------~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v 432 (808)
T PLN02328 367 --------------VDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFI 432 (808)
T ss_pred --------------cCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEE
Confidence 012223333211 1122222333221110000000001111000000 0 0011235567
Q ss_pred CCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHH
Q 006176 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEEN 460 (658)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~~~~ 460 (658)
.||++.|+++|++.+ .|++|++|++|...++.+. | +.+|+++.||+||+|+++..+.. .+.-.+.+|.++.+
T Consensus 433 ~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV~-V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~ 505 (808)
T PLN02328 433 PGGNDTFVRELAKDL-----PIFYERTVESIRYGVDGVI-V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKD 505 (808)
T ss_pred CCcHHHHHHHHHhhC-----CcccCCeeEEEEEcCCeEE-E-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHH
Confidence 899999999999877 4999999999999887764 5 45788899999999999776431 12223468988888
Q ss_pred HHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccc-cchh
Q 006176 461 FQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDW 539 (658)
Q Consensus 461 ~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w 539 (658)
.+..+.++. ..+|++.+++++|.........+..+ . ...+.+++. .+. . .+.|..++..++... ...+
T Consensus 506 AI~~l~yG~-~~KV~L~F~~~FW~~~~d~fG~l~~d-~----s~rG~~~lf-~s~-s---~~~G~~vLvafv~G~~A~~~ 574 (808)
T PLN02328 506 AIQRLGYGL-LNKVALLFPYNFWGGEIDTFGHLTED-P----SMRGEFFLF-YSY-S---SVSGGPLLIALVAGDAAVKF 574 (808)
T ss_pred HHHcCCCcc-eEEEEEEeCCccccCCCCceEEEeec-C----CCCceEEEE-ecC-C---CCCCCcEEEEEecChhhHHH
Confidence 888777664 57999999999887543322222221 0 011112221 111 1 123555666665442 2223
Q ss_pred cccChhhhHHHHHHHHHHHHHHHHHhhCCC-------CcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 006176 540 EGLAQKDYDAKKELVADEIINRLENKLFPG-------LKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (658)
Q Consensus 540 ~~l~~~~~~~~ke~~~~~il~~L~~~~~P~-------l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (658)
..+ .++++++.+++.|. ++++. ....+++.|...| ...|+|...+.+..... .+.
T Consensus 575 e~l-------sdeE~v~~vL~~Lr-~ifgp~~~~vp~P~~~~vtrW~~DP--------~s~GSYS~~~pG~~~~~--~~~ 636 (808)
T PLN02328 575 ETL-------SPVESVKRVLQILR-GIFHPKGIVVPDPVQAVCTRWGKDC--------FTYGSYSYVAVGSSGDD--YDI 636 (808)
T ss_pred hcC-------CHHHHHHHHHHHHH-HHhCcccccccCcceEEEecCCCCC--------CcCCCCCCCCCCCchhH--HHH
Confidence 222 34678888999998 66642 1222233333222 22566654432221000 111
Q ss_pred CCCCC--CcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhcc
Q 006176 613 NTTGI--NGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGN 653 (658)
Q Consensus 613 ~~t~i--~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg~ 653 (658)
...++ ++|||||++|... +.|+||+.||++||++|++.+..
T Consensus 637 LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 637 LAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred HhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhh
Confidence 12343 5899999998653 37999999999999999998753
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.95 E-value=2.6e-26 Score=250.93 Aligned_cols=227 Identities=25% Similarity=0.383 Sum_probs=140.7
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHHHHhhccCCc
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVKAPS 470 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~~~s 470 (658)
+...+...|++|++|++|++|..++++++ |.+.+|+++.||+||+|+++..+.. .+.+ .+|....++...+.+. +
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~~~~a~~~~~~~-~ 290 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPEDKRRAIENLPYS-S 290 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHHHHHHHHTEEEE-E
T ss_pred HHHHHhhcCceeecCCcceeccccccccc-cccccceEEecceeeecCchhhhhhhhhcc--cccccccccccccccC-c
Confidence 33444455779999999999999999886 8899999999999999999877643 3333 5776666666555444 4
Q ss_pred eEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccc-cchhcccChhhhHH
Q 006176 471 FLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDA 549 (658)
Q Consensus 471 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~l~~~~~~~ 549 (658)
..++++.++.++|+++.....++..+. .....++..++..++. ++..++..++..+ ...|.++
T Consensus 291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~------- 354 (450)
T PF01593_consen 291 VSKVFLGFDRPFWPPDIDFFGILYSDG------FSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDL------- 354 (450)
T ss_dssp EEEEEEEESSGGGGSTTTESEEEEESS------TSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTS-------
T ss_pred ceeEEEeeecccccccccccceecccC------ccccccccccccCccc---ccCCcceeeeeccccchhccc-------
Confidence 569999999999877532233333332 0111233334333322 3455555555443 2334333
Q ss_pred HHHHHHHHHHHHHHHhhCCC--CcCcE--EEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCC-CcEEEeC
Q 006176 550 KKELVADEIINRLENKLFPG--LKQSI--AFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGI-NGLYCVG 624 (658)
Q Consensus 550 ~ke~~~~~il~~L~~~~~P~--l~~~i--~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i-~gLylaG 624 (658)
.+|++.+.++++|+ +++|. ..+.. ...+ |.+ .....++|+..+.+.. ...++..++++ +||||||
T Consensus 355 ~~e~~~~~~~~~L~-~~~~~~~~~~~~~~~~~~------w~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aG 424 (450)
T PF01593_consen 355 SDEEILERVLDDLR-KILPGASIPDPIDITVTR------WSR-DPYPRGSYSYFPPGQS--SQFRPALRTPIDPGLYFAG 424 (450)
T ss_dssp CHHHHHHHHHHHHH-HHHTTGGGGEESEEEEEE------CTT-STTTSSSCECHCTTHH--HHHHHHHHSCBTTTEEE-S
T ss_pred chhhhHHHHHHHhh-hccccccccccccccccc------ccc-cccccccccccccccc--ccccccccCCcceEEEEee
Confidence 35778899999998 88884 12111 1111 111 1123455543332211 00134445777 6999999
Q ss_pred CCccCC--CChhHHhhhHHHHHHHHH
Q 006176 625 DSCFPG--QGVIAVAFSGVMCAHRVA 648 (658)
Q Consensus 625 ~~~~pG--~Gv~ga~~sG~~aA~~Il 648 (658)
++++++ +|++||+.||++||++|+
T Consensus 425 ~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 425 DWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp GGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 999987 699999999999999986
No 24
>PLN03000 amine oxidase
Probab=99.94 E-value=1.8e-24 Score=244.31 Aligned_cols=421 Identities=17% Similarity=0.203 Sum_probs=236.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeC----CeEEccccccccCCcCCCchHHHHHHHHh
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD----GYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~----g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (658)
...+|+|||||++||+||..|++.|++|+|+|+.+++||++.|.+.. |+.+|.|++++++.. .+.+..++++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~----~npl~~L~~q 258 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTL----GNPLGIIARQ 258 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCC----ccHHHHHHHH
Confidence 46899999999999999999999999999999999999999998854 578999999999752 2346677889
Q ss_pred cCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 232 lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
+|+.+...... ..+...+|..+. .+... .+. ..+..+++.+.+....... .....++. ..
T Consensus 259 lgl~l~~~~~~--~~ly~~~Gk~v~--~~~~~---~ve-------~~fn~lLd~~~~lr~l~~~---~~~D~SLg---~a 318 (881)
T PLN03000 259 LGSSLYKVRDK--CPLYRVDGKPVD--PDVDL---KVE-------VAFNQLLDKASKLRQLMGD---VSMDVSLG---AA 318 (881)
T ss_pred cCCceeecCCC--CeEEEeCCcCCc--hhhhh---hHH-------HHHHHHHHHHHHHHHHhcc---cCcCCcHH---HH
Confidence 99875533222 222333454321 11000 000 0011111111111110000 00000000 00
Q ss_pred hcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHh-H--hhcCCccccCCChHHH
Q 006176 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-D--RHFGGINYPVGGVGGI 388 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~-~--~~~~g~~~p~gG~~~l 388 (658)
+ + .+.++...-+. +.-+.++.................+....... . ...+..+.+.||++.|
T Consensus 319 L----e----------~~~~~~g~~~t-~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 319 L----E----------TFRQVSGNDVA-TEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred H----H----------HHHHHHcccCC-HHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHH
Confidence 0 0 00000000001 11111221111000001111111111111110 0 1123355678999999
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHHHHhhcc
Q 006176 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVK 467 (658)
Q Consensus 389 ~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~ 467 (658)
+++|++.+ .|+++++|++|...++.+. |++.+ +++.||+||+|+++..+-. .+.-.++||+++.+++..+.+
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~-V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~ 456 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYGSNGVK-VIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGF 456 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEECCCeEE-EEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCC
Confidence 99999877 4999999999999887765 66543 5799999999998766421 222234799988888887766
Q ss_pred CCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCC-CCceEEEEEeccc-cchhcccChh
Q 006176 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP-EGHHILHIFTICS-IEDWEGLAQK 545 (658)
Q Consensus 468 ~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap-~G~~~l~~~~~~~-~~~w~~l~~~ 545 (658)
+. ..+|++.|++++|+.+......+.++. ..-+.++.. .+ ..+ .|..++..++..+ +..|..+
T Consensus 457 G~-l~KViL~Fd~~FW~~d~~~FG~l~~~~-----~~rg~~~~f-~s-----~sp~~G~pVLvafv~Gd~A~~le~l--- 521 (881)
T PLN03000 457 GL-LNKVAMLFPYVFWSTDLDTFGHLTEDP-----NYRGEFFLF-YS-----YAPVAGGPLLIALVAGEAAHKFETM--- 521 (881)
T ss_pred cc-eEEEEEEeCCccccCCCCceeEEecCC-----CCCceeEEE-eC-----CCCCCCCcEEEEEecCchhHHhhcC---
Confidence 64 679999999999876644333332221 000112221 11 122 4555666666553 3334433
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCC--C--c---CcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCC-
Q 006176 546 DYDAKKELVADEIINRLENKLFPG--L--K---QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGI- 617 (658)
Q Consensus 546 ~~~~~ke~~~~~il~~L~~~~~P~--l--~---~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i- 617 (658)
.++++++.+++.|. ++|+. . . ..++..|... .+..|+|...+.+..... ......|+
T Consensus 522 ----SdeE~ve~vl~~Lr-kifg~~~~~vp~Pv~~ivtrW~~D--------PysrGSYS~~~pG~~~~~--~d~LaePv~ 586 (881)
T PLN03000 522 ----PPTDAVTRVLHILR-GIYEPQGINVPDPLQTVCTRWGGD--------PFSLGSYSNVAVGASGDD--YDILAESVG 586 (881)
T ss_pred ----CHHHHHHHHHHHHH-HHhCccccccCCceEEEEccCCCC--------CCCCccccCCCCCCchHH--HHHHhCcCC
Confidence 34778899999999 77752 1 1 2222222222 223677765543221110 11123444
Q ss_pred -CcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhc
Q 006176 618 -NGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 618 -~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
++|||||+.|... +.|+||+.||++||++|++.++
T Consensus 587 ~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence 4899999887542 4799999999999999999885
No 25
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.94 E-value=2.2e-24 Score=223.19 Aligned_cols=428 Identities=18% Similarity=0.125 Sum_probs=239.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~ 234 (658)
....||||||+|++||++|+.|.|.|++|+|+|+++++|||+.+.+..|-..|.|++++.. ..+.+..+.++.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-----~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-----THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-----cchhhhhhHHhcCC
Confidence 4578999999999999999999999999999999999999999988877788999777753 44567788889998
Q ss_pred ceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcC
Q 006176 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (658)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (658)
..+...........+..... ..+..+... ...+............... ...+...+
T Consensus 80 ~~~~fi~~g~~~~~~~~~~~----~~p~~~~~~--------~~d~~~~~~~~~~~a~~~~--~~~~~~t~---------- 135 (450)
T COG1231 80 PLEPFIRDGDNVIGYVGSSK----STPKRSLTA--------AADVRGLVAELEAKARSAG--ELDPGLTP---------- 135 (450)
T ss_pred CCCceeccCccccccccccc----ccchhccch--------hhhhcchhhhhhhhhhccc--ccCcccCc----------
Confidence 76544322111111100000 000000000 0000000000000000000 00000000
Q ss_pred hhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchH---HHHHHHHh--Hh-----hcCCccccCCC
Q 006176 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPM---INASMVLC--DR-----HFGGINYPVGG 384 (658)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~---~~~~~~~~--~~-----~~~g~~~p~gG 384 (658)
...+.+.+++..| . ......+...+....... ...+.+... ........ .. .....+.+.||
T Consensus 136 -----~~~e~~~~~~~~W-~-~~~~~~~~~~~~a~~~~g-~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG 207 (450)
T COG1231 136 -----EDRELDLESLAAW-K-TSSLRGLSRDPGARVSPG-PIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG 207 (450)
T ss_pred -----chhhhhhHHHHhh-h-hccccccccCccceeccC-CCCcccccchhhhhhhhhhhhccccccccccchhhccCcc
Confidence 0000111111222 0 000000100010000000 011111110 00000000 00 01123455699
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHh
Q 006176 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKL 464 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~ 464 (658)
|+.|++++++.+ |-.|+++++|.+|...+++|+ |++.+..++.+|.||+|+++..+ .++--.+.++.+.++..+.
T Consensus 208 md~la~Afa~ql---~~~I~~~~~V~rI~q~~~gV~-Vt~~~~~~~~ad~~i~tiPl~~l-~qI~f~P~l~~~~~~a~~~ 282 (450)
T COG1231 208 MDQLAEAFAKQL---GTRILLNEPVRRIDQDGDGVT-VTADDVGQYVADYVLVTIPLAIL-GQIDFAPLLPAEYKQAAKG 282 (450)
T ss_pred HHHHHHHHHHHh---hceEEecCceeeEEEcCCeEE-EEeCCcceEEecEEEEecCHHHH-hhcccCCCCCHHHHHHhcC
Confidence 999999999888 568999999999999988876 88877457999999999987554 4544344688888777776
Q ss_pred hccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEE-Ee-ccccchhccc
Q 006176 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHI-FT-ICSIEDWEGL 542 (658)
Q Consensus 465 ~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~-~~-~~~~~~w~~l 542 (658)
+.+. +..++.+.+++++|...-......+.| .+ ..+++.++. + -.+|..++.- +. ...+..|..+
T Consensus 283 ~~y~-~~~K~~v~f~rpFWee~~~l~G~~~tD------~~--~~~i~~~s~-~---~~~G~gVl~g~~~~g~~A~~~~~~ 349 (450)
T COG1231 283 VPYG-SATKIGVAFSRPFWEEAGILGGESLTD------LG--LGFISYPSA-P---FADGPGVLLGSYAFGDDALVIDAL 349 (450)
T ss_pred cCcc-hheeeeeecCchhhhhcccCCceEeec------CC--cceEecCcc-c---cCCCceEEEeeeeccccceeEecC
Confidence 5444 467999999999987654112222322 12 245666654 2 2256666654 22 2345667766
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHhhCCCCc-CcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEE
Q 006176 543 AQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLY 621 (658)
Q Consensus 543 ~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLy 621 (658)
++ ++.++.++.++. ++||+-. +...... -.+|.+. .+..|.+..++.+....+ -|....+.+.+|
T Consensus 350 ~~-------~~r~~~vl~~l~-~~~g~~a~~~f~~~~---~~~W~~d-pwt~G~~aa~~~g~~~~~--~~~l~~p~gRIh 415 (450)
T COG1231 350 PE-------AERRQKVLARLA-KLFGDEAADPFDYGA---SVDWSKD-PWTLGGTAAYPPGQRTKL--YPTLPAPHGRIH 415 (450)
T ss_pred CH-------HHHHHHHHHhHh-hhCChhhccccccce---eeecccC-CcCCccccccCCcccccc--cccccCCCCceE
Confidence 43 678899999999 8999432 2222201 1223332 122344444443332221 234457889999
Q ss_pred EeC-CCc-cCCCChhHHhhhHHHHHHHHHHHh
Q 006176 622 CVG-DSC-FPGQGVIAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 622 laG-~~~-~pG~Gv~ga~~sG~~aA~~Il~~l 651 (658)
+|| .++ ..++.++||+.||++||.+|.+.+
T Consensus 416 ~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 416 FAGTEHASEFGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred EeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence 999 433 225689999999999999998765
No 26
>PLN02976 amine oxidase
Probab=99.94 E-value=2.4e-23 Score=240.12 Aligned_cols=452 Identities=17% Similarity=0.148 Sum_probs=239.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEee-CCeEEccccccccCCcCCC----chHHHHHH
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKG----NLNLITQA 228 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~----~~~~~~~l 228 (658)
....+||+|||+|++|+++|+.|++.|++|+|||+.+.+||++.+... .|+.+|.|++++++..... ..+.+..+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~l 769 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLI 769 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHH
Confidence 345689999999999999999999999999999999999999988764 5889999999998754311 12344556
Q ss_pred HHhcCCceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhh-hhhhhccchhhH-
Q 006176 229 LAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALN-SLELKSLEEPIY- 306 (658)
Q Consensus 229 l~~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~- 306 (658)
++++|+.......... .+...+|..+. .+ ....+.. .+..+++.......... .....++...+.
T Consensus 770 a~qlGl~l~~~~~~~~-~yd~~~G~~V~--~e---~~~~v~~-------~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~ 836 (1713)
T PLN02976 770 CAQLGLELTVLNSDCP-LYDVVTGEKVP--AD---LDEALEA-------EYNSLLDDMVLLVAQKGEHAMKMSLEDGLEY 836 (1713)
T ss_pred HHhcCCccccccCCCc-eeEccCCcCCC--HH---HHHHHHH-------HHHHHHHHHHHHHhhcccCccCCCHHHHHHH
Confidence 7888887654432211 12233343321 11 1111110 01111111100000000 000000000000
Q ss_pred hhhhhhcC-h---hhhh--------hHhh----cccccHHHHHHHhcCCHHHHHHHhhhhhhh---ccCCCCCchHHHHH
Q 006176 307 LFGQFFKR-P---LECL--------TLAY----YLPQNAGNIARKYIKDPQLLSFIDAECFIV---STINALQTPMINAS 367 (658)
Q Consensus 307 ~~~~~~~~-~---~~~~--------~~~~----~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~p~~~~~ 367 (658)
.+...... . .+.. .... ....-.......-+.++..+.+++...... .+..+.+.++.+..
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~ 916 (1713)
T PLN02976 837 ALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWN 916 (1713)
T ss_pred HHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhh
Confidence 00000000 0 0000 0000 000000000011111122222222221111 01122222222111
Q ss_pred HH-HhHhhcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEe----------CCEEEEEEECCCcEEEcCEEE
Q 006176 368 MV-LCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE----------QGKAVGVRLSDGREFYAKTII 436 (658)
Q Consensus 368 ~~-~~~~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~----------~~~v~gV~~~~G~~i~ad~VV 436 (658)
.. ......+..+.+.||++.|+++|++.+ .|++|++|++|.+. ++.| .|.+.+|+++.||+||
T Consensus 917 qd~~y~~fgG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVI 990 (1713)
T PLN02976 917 QDDVYGGFGGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVL 990 (1713)
T ss_pred cccccccCCCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEE
Confidence 00 000112334568999999999998876 59999999999984 2344 4788899889999999
Q ss_pred ECCChhHHHh-hccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCC
Q 006176 437 SNATRWDTFG-KLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTV 515 (658)
Q Consensus 437 ~a~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 515 (658)
+|+++..+-. .+.-.++||..+...+..+.++ ...+|++.|++++|+.+.........+ . ...+.++..++
T Consensus 991 VTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG-~lnKV~LeFdrpFW~~d~d~FG~s~ed----t-dlrG~~~~~wn-- 1062 (1713)
T PLN02976 991 ITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFG-VLNKVVLEFPEVFWDDSVDYFGATAEE----T-DLRGQCFMFWN-- 1062 (1713)
T ss_pred EeCCHHHhhhcccccCCcccHHHHHHHHhhccc-cceEEEEEeCCccccCCCCcccccccc----C-CCCceEEEecc--
Confidence 9999765421 2333457998877777776655 366999999999987643221111111 0 01111232221
Q ss_pred CCCCCCCCCceEEEEEeccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCC-----cCcEEEEEecChhHHHHHh
Q 006176 516 LDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGL-----KQSIAFREIGSPKTHRRYL 589 (658)
Q Consensus 516 ~d~~~ap~G~~~l~~~~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l-----~~~i~~~~~~tP~~~~~~~ 589 (658)
...+.|..+|..+.... +..|..+ .++++++.+++.|. ++|+.- ...++..|...|
T Consensus 1063 ---lr~psG~pVLVafv~G~aAreiEsL-------SDEE~Ve~ALe~Lr-KlFG~~~iPdPv~~vvTrWssDP------- 1124 (1713)
T PLN02976 1063 ---VKKTVGAPVLIALVVGKAAIDGQSM-------SSSDHVNHALMVLR-KLFGEALVPDPVASVVTDWGRDP------- 1124 (1713)
T ss_pred ---CCCCCCCCEEEEEeccHhHHHHhhC-------CHHHHHHHHHHHHH-HHcCcccccCcceeEEecCCCCC-------
Confidence 12234656666655442 2233222 34678889999998 888632 122222332222
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhcc
Q 006176 590 ARDQGTYGPMPRGTPKGLLGMPFNTTGING-LYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGN 653 (658)
Q Consensus 590 ~~~~G~yg~~p~~~~~~~~~~p~~~t~i~g-LylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg~ 653 (658)
+..|+|...+.+..... +.....|+.| |||||..|.+. +.|+||+.||++||++|+..|+.
T Consensus 1125 -ySrGSYSy~~PGs~~~d--~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1125 -FSYGAYSYVAIGASGED--YDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred -CcCccccCCCCCCCchH--HHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 23577765433321100 1112356667 99999988553 46999999999999999998854
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.2e-23 Score=226.90 Aligned_cols=432 Identities=19% Similarity=0.173 Sum_probs=231.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeE-EccccccccCCcCCCchHHHHHHHHhcC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFGFSDKGNLNLITQALAAVG 233 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (658)
...++|||||||++||+||.+|...|++|+|+|+++++|||+.|+...++. +|+|++++++... +.+.-+.+++|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~----npl~~l~~qlg 88 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYN----NPLALLSKQLG 88 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCc----cHHHHHHHHhC
Confidence 456899999999999999999999999999999999999999999987766 9999999998643 26777888999
Q ss_pred CceeEeeCCCeEEEEcCCCcEEEEcC-CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhh
Q 006176 234 CEMEVIPDPTTVHFHLPNDLSVRVHR-EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (658)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (658)
++.....+.... +...++....... ..+... ..++................ + ....+....
T Consensus 89 l~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~~--------------~~l~~~~~~~~~~~~~~~~~-i--~~~~~~~~~ 150 (501)
T KOG0029|consen 89 LELYKVRDTCPL-FNENGGESDKVFDDFVEQEF--------------NRLLDDASNLEQRLDNEIIG-I--SDDSFGEAL 150 (501)
T ss_pred cccceecccccc-cccCCcccccccccchhhhh--------------HHHHHHHhhhhhhhhhcccc-c--ccccHHHHH
Confidence 876543322111 1111111111100 010000 00111000000000000000 0 000000000
Q ss_pred cChhhhhhHhhcccccHHHHHHHhcCC-HHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCC---ccccCCChHHH
Q 006176 313 KRPLECLTLAYYLPQNAGNIARKYIKD-PQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGG---INYPVGGVGGI 388 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g---~~~p~gG~~~l 388 (658)
.... .... ..........+... ..+...+...+. . . ..............+...++ .....+|...+
T Consensus 151 ~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v 221 (501)
T KOG0029|consen 151 EAFL---SASR--LMKTLLELLLEGEADKVLQWHLVNLEL-T--F-IAHLENASARLWDQDELFGGGGIHLLMKGGYEPV 221 (501)
T ss_pred HhHH---HHHH--HHHhhHHHhhhhhhhHHHHHHHHHHHH-H--h-hccHhHhhHHhhhhhhhcccccchhHhhCCccHH
Confidence 0000 0000 00000000000000 001000000000 0 0 00000001111111111111 24567888888
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHh-hccCCCCCChHHHHHHHhhcc
Q 006176 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVK 467 (658)
Q Consensus 389 ~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~ 467 (658)
...+++ |.+|+++..|.+|.+.++..+.|++.++..+.+|.||++++...+.. .+.-.+++|.++.++++++..
T Consensus 222 ~~~la~-----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~ 296 (501)
T KOG0029|consen 222 VNSLAE-----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGF 296 (501)
T ss_pred HhhcCC-----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCC
Confidence 888877 78999999999999987663346666776799999999999766532 133355799988888888875
Q ss_pred CCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEecc-ccchhcccChhh
Q 006176 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTIC-SIEDWEGLAQKD 546 (658)
Q Consensus 468 ~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~-~~~~w~~l~~~~ 546 (658)
+ ...+|.+.+++.+|+++.+....+-.+... .....++-+.+. .|...+..+... .+..+.
T Consensus 297 g-~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~---~~~~~f~~~~~~--------~~~~~l~~~~~~~~a~~~~------ 358 (501)
T KOG0029|consen 297 G-LVNKVILEFPRVFWDQDIDFFGIVPETSVL---RGLFTFYDCKPV--------AGHPVLMSVVVGEAAERVE------ 358 (501)
T ss_pred C-ceeEEEEEeccccCCCCcCeEEEccccccc---cchhhhhhcCcc--------CCCCeEEEEehhhhhHHHh------
Confidence 4 467999999999997654321111111100 000011111111 122234433332 233333
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCC--CcC---cEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCc-E
Q 006176 547 YDAKKELVADEIINRLENKLFPG--LKQ---SIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGING-L 620 (658)
Q Consensus 547 ~~~~ke~~~~~il~~L~~~~~P~--l~~---~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~g-L 620 (658)
...++++++.++..|+ ++|++ ..+ ..+..|.. .....|+|...+.+.+...+ ...+.++.| +
T Consensus 359 -~~~~~~~~~~~~~~l~-k~f~~~~~~~p~~~~vt~w~~--------d~~~~gsys~~~~~~~~~~y--~~l~~pi~~~~ 426 (501)
T KOG0029|consen 359 -TLSDSEIVKKAMKLLR-KVFGSEEVPDPLDALVTRWGT--------DPLSGGSYSYVAVGSDGDDY--DRLAEPIKNRV 426 (501)
T ss_pred -cCCHHHHHHHHHHHHH-HHhccCcCCCccceeeeeecc--------cccCCccccccCCCCChhHH--HHHhccccCcE
Confidence 3356889999999999 88882 222 22222221 12335666554433321111 123578889 9
Q ss_pred EEeCCCccCC--CChhHHhhhHHHHHHHHHHHhc
Q 006176 621 YCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 621 ylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
||||..|-.. +.|.||+.||.++|..|+..+.
T Consensus 427 ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 427 FFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred EecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 9999887332 4899999999999999999886
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.90 E-value=5.7e-22 Score=204.85 Aligned_cols=430 Identities=20% Similarity=0.245 Sum_probs=232.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcC-
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG- 233 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG- 233 (658)
...+|+|||||+|||+||.+|-..|+ +|+|+|+.+++|||+.|+......+|.|+++++|..+ +.+.++.++.|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~g----NpVY~la~~~g~ 95 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEG----NPVYELAKEYGD 95 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCC----ChHHHHHHHhCc
Confidence 45689999999999999999997775 5999999999999999999877799999999998432 34677778777
Q ss_pred CceeEeeCCCeEEE--EcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 234 CEMEVIPDPTTVHF--HLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 234 ~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
++.-....+..... ...+|.. -.+.+...+.+ ++.. .........+. .
T Consensus 96 ~~~~~~tg~~~~~~~~~~~~g~~-----V~~~~~~~~~~-----------~~~~---~~~~~r~~~~~---~-------- 145 (498)
T KOG0685|consen 96 LKLLEVTGPAYVDNFHTRSNGEV-----VPEELLDELNE-----------ITVT---LSDKLREAEIA---H-------- 145 (498)
T ss_pred cceeccCCccccceeEEEecCcc-----CcHHHHHHHHH-----------HHHh---hhhhccccccc---C--------
Confidence 22111111111100 0111111 11222222211 1100 00000000000 0
Q ss_pred hcChhhhhhHhhcccccHHHHH--------HHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcC--Ccccc
Q 006176 312 FKRPLECLTLAYYLPQNAGNIA--------RKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFG--GINYP 381 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~--------~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--g~~~p 381 (658)
+..++..+....+.+.+ ++-+..+.+..++..++.+.+..+..+.+... +.......+ .....
T Consensus 146 -----~~~SvG~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~--~~ey~~~~ge~~~~~~ 218 (498)
T KOG0685|consen 146 -----DEGSVGEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRA--LLEYTECPGEELLIWN 218 (498)
T ss_pred -----ccccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhh--ccceeecCchhhheec
Confidence 00000111111111111 01111122233333344333322222222111 000001111 22344
Q ss_pred CCChHHHHHHHHHHHHHc----C--cEEEeCceeeEEEEeC-CEEEEEEECCCcEEEcCEEEECCChhHHH---hhccCC
Q 006176 382 VGGVGGIAKSLAKGLADK----G--SEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDTF---GKLLKG 451 (658)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~----G--~~I~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VV~a~g~~~~~---~~Ll~~ 451 (658)
.-|..++.+.|.+.+.+. | .+++++++|.+|..++ +++ .|++.||+.+.||+||++.+...+. .+|+.
T Consensus 219 ~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~- 296 (498)
T KOG0685|consen 219 KKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFV- 296 (498)
T ss_pred hhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcC-
Confidence 557778888887766543 2 3566779999999885 455 4999999999999999999866532 22443
Q ss_pred CCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeec-chhhhhcc-CC---CceEEeccCCCCCCCCCCCce
Q 006176 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLE-DDWNRLEE-PY---GSIFLSIPTVLDSSLAPEGHH 526 (658)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~s~~d~~~ap~G~~ 526 (658)
++||.++.+++.++..+. +.+++|-+.+++||++...-.+++. ++...+.. .. ..++.-.+.. .+| +
T Consensus 297 P~LP~~K~~AIe~lgfGt-v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~----~~~---~ 368 (498)
T KOG0685|consen 297 PPLPAEKQRAIERLGFGT-VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVS----WAP---N 368 (498)
T ss_pred CCCCHHHHHHHHhccCCc-cceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcC----cch---h
Confidence 479999999999888775 5799999999999988654444443 33111110 00 0111111211 111 2
Q ss_pred EEEEEeccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCc-----CcEEEEEecChhHHHHHhcCCCCcccCCC
Q 006176 527 ILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-----QSIAFREIGSPKTHRRYLARDQGTYGPMP 600 (658)
Q Consensus 527 ~l~~~~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~-----~~i~~~~~~tP~~~~~~~~~~~G~yg~~p 600 (658)
++..++... +.....+ ++|++.+.+...|. +...+.. .-+-..|...| ...|+|.+++
T Consensus 369 vL~gWiaG~~~~~me~l-------sdEev~e~~~~~lr-~fl~n~~iP~p~kilRs~W~snp--------~frGSYSY~s 432 (498)
T KOG0685|consen 369 VLLGWIAGREARHMETL-------SDEEVLEGLTKLLR-KFLKNPEIPKPKKILRSQWISNP--------FFRGSYSYRS 432 (498)
T ss_pred hhheeccCCcceehhhC-------CHHHHHHHHHHHHH-HhcCCCCCCCchhhhhhcccCCC--------ccCceeeEee
Confidence 333222221 1222222 35777777777777 6554322 11111222222 2367776543
Q ss_pred CCC---CCCCCCCC---CCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhc
Q 006176 601 RGT---PKGLLGMP---FNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (658)
Q Consensus 601 ~~~---~~~~~~~p---~~~t~i~gLylaG~~~~pG--~Gv~ga~~sG~~aA~~Il~~lg 652 (658)
.+. ..+.+..| ...++-+.+-|||..||.- ..+.||++||++.|+++++.+.
T Consensus 433 vgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 433 VGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred ccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHH
Confidence 221 11222222 2234567899999999764 3789999999999999998554
No 29
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=204.56 Aligned_cols=438 Identities=18% Similarity=0.200 Sum_probs=244.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEee-CCeEEccccccccCCcCCCchHHHHHHHHhcCCce
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~ 236 (658)
.+|+|+|||+|||+||++|+++|++|+|+|+++++||.+.+++. +|...|.|-|.+++ .+..+.+++++++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~-----~Y~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFG-----CYYNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEech-----hHHHHHHHhhhCCchh
Confidence 36999999999999999999999999999999999999999985 68899999999997 4567888999998875
Q ss_pred eEeeCCCeEEE-EcC--CCcE--EEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhh
Q 006176 237 EVIPDPTTVHF-HLP--NDLS--VRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (658)
Q Consensus 237 ~~~~~~~~~~~-~~~--~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (658)
..........+ ..+ .|.. +..... |.....+..+.... .+ ...+.....-.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------p~p~~~~~~~l~~~--------~~---~~~~~~~~~~~l 132 (485)
T COG3349 76 RLQLREHTKTFVGSGTRPGAIGRFARPDA------------PQPTNGLKAFLRLP--------QL---PRREKIRFVLRL 132 (485)
T ss_pred eeehHhhhhhhcccCCCCCcccccccCCC------------CCcchhhhhhhhcc--------cc---CHHHHhHHhhcc
Confidence 44333222211 111 1110 111110 00111111111100 00 000000000011
Q ss_pred hcChh-hhhhHhhcccccHHHHHHHhcCCH-HHHHHHhhhhhhhccCCCCCchHHHHH---HHHhHhh-c-CCccccCCC
Q 006176 312 FKRPL-ECLTLAYYLPQNAGNIARKYIKDP-QLLSFIDAECFIVSTINALQTPMINAS---MVLCDRH-F-GGINYPVGG 384 (658)
Q Consensus 312 ~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~p~~~~~---~~~~~~~-~-~g~~~p~gG 384 (658)
...+. ....+.++...++.+++++....+ ..++.+...........++..++.... ..+.... . .-....+|+
T Consensus 133 ~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~ 212 (485)
T COG3349 133 GDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGS 212 (485)
T ss_pred ccccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCC
Confidence 11111 244566777889999998865543 455666665555555666666652111 1111111 1 122345666
Q ss_pred h-HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC----CEEEEEEECCCcEE---EcCEEEECCChhHHHhhccCCCCCCh
Q 006176 385 V-GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRLSDGREF---YAKTIISNATRWDTFGKLLKGEQLPK 456 (658)
Q Consensus 385 ~-~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~----~~v~gV~~~~G~~i---~ad~VV~a~g~~~~~~~Ll~~~~lp~ 456 (658)
. ..+...+.+.+.+.|.+++.+.+|+.|.... .+++++.+. +... .++.++.+.+... +...++.. .++
T Consensus 213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~-~~~~~ps~-W~~ 289 (485)
T COG3349 213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQR-FKRDLPSE-WPK 289 (485)
T ss_pred CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccch-HhhcCccc-ccc
Confidence 5 4678889999999999999999999999764 356777766 4433 3445555444322 33444432 221
Q ss_pred HHHHHHHhh-ccCCceEEEEEeeecCcCCCCCCcceeeec-chhhhhccCCCceEEeccCCCCCCCCCCCce-EEEEEec
Q 006176 457 EEENFQKLY-VKAPSFLSIHMGVKAEVLPPDTDCHHFVLE-DDWNRLEEPYGSIFLSIPTVLDSSLAPEGHH-ILHIFTI 533 (658)
Q Consensus 457 ~~~~~~~~~-~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~-~l~~~~~ 533 (658)
+. .+...+ .+...+.+++++++...++.....+...+. ..|. ..+....+.-.+.... ....+|.. .+. ...
T Consensus 290 ~~-~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s--~~~l~~~~ad~~~~~~-~y~e~g~~~~le-~~~ 364 (485)
T COG3349 290 WS-NFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWS--DDTLGGVVADLALTSP-DYVEPGAGCYLE-KVL 364 (485)
T ss_pred cc-cccccccccccceeEEEEeecCccccccccchhhhhhccccc--cccCCceeeeccccch-hhccccchhhhh-hhh
Confidence 11 111111 134467788999987654433211211111 1111 1111111111111111 12222321 111 111
Q ss_pred cccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcE-EEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 006176 534 CSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSI-AFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (658)
Q Consensus 534 ~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i-~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (658)
.+...|. .+.++++.....+++. ..+|...... ....+.+ ..+.|...|...+ .||.
T Consensus 365 ~~~~~~~-------~~~~~~~~a~~e~~~~-~~vP~~~~a~~~~~~i~~----------~q~~~~~~pgs~~----~rP~ 422 (485)
T COG3349 365 APGWPFL-------FESDEAIVATFEKELY-ELVPSLAEAKLKSSVLVN----------QQSLYGLAPGSYH----YRPE 422 (485)
T ss_pred ccccccc-------ccchhhHHHHHHHHhh-hcCCchhcccccccceec----------cccccccCCCccc----cCCC
Confidence 2222232 2345777788888888 7888776443 2222222 2344544454332 3788
Q ss_pred CCCCCCcEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhcc
Q 006176 613 NTTGINGLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIGN 653 (658)
Q Consensus 613 ~~t~i~gLylaG~~~~p--G~Gv~ga~~sG~~aA~~Il~~lg~ 653 (658)
..|+++|++++||++.. -+.|++|..||+.||+.|++.++.
T Consensus 423 ~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 423 QKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred CCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhh
Confidence 88999999999999843 357999999999999999988764
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.84 E-value=3.5e-20 Score=177.75 Aligned_cols=326 Identities=22% Similarity=0.246 Sum_probs=186.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCcee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~~ 237 (658)
.+|+|||+|++||+||+.|+.+|++|+|+||+.-+|||..|-+.+|..||.|+.++... ...+.++++.+..+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~-----~~~F~~~Ve~~~~~-- 74 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR-----DELFLRAVEALRDD-- 74 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCC-----chHHHHHHHHHHhC--
Confidence 36999999999999999999999999999999999999999999999999999887521 11222222221100
Q ss_pred EeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhcChhh
Q 006176 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (658)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (658)
|. +..++. .
T Consensus 75 --------------gl-V~~W~~-------------------------------------------~------------- 83 (331)
T COG3380 75 --------------GL-VDVWTP-------------------------------------------A------------- 83 (331)
T ss_pred --------------Cc-eeeccc-------------------------------------------c-------------
Confidence 00 000000 0
Q ss_pred hhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCCccccCCChHHHHHHHHHHHH
Q 006176 318 CLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLA 397 (658)
Q Consensus 318 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~ 397 (658)
+-.+..+. . .....+ .-|.-.-||..|++.|+..|
T Consensus 84 ---------------~~~~~~~~-~------------~~~~d~----------------~pyvg~pgmsalak~LAtdL- 118 (331)
T COG3380 84 ---------------VWTFTGDG-S------------PPRGDE----------------DPYVGEPGMSALAKFLATDL- 118 (331)
T ss_pred ---------------ccccccCC-C------------CCCCCC----------------CccccCcchHHHHHHHhccc-
Confidence 00000000 0 000000 00223456778888776666
Q ss_pred HcCcEEEeCceeeEEEEeCCEEEEEEECCC-cEEEcCEEEECCChhHHHhhccCC--CCCChHHHHHHHhhccCCceEEE
Q 006176 398 DKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWDTFGKLLKG--EQLPKEEENFQKLYVKAPSFLSI 474 (658)
Q Consensus 398 ~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VV~a~g~~~~~~~Ll~~--~~lp~~~~~~~~~~~~~~s~~~v 474 (658)
+|+++++|++|...++..+ +.+++| +...+|.||+|+++..+. .||.. ..+|+..+..+....+.| +.++
T Consensus 119 ----~V~~~~rVt~v~~~~~~W~-l~~~~g~~~~~~d~vvla~PAPQ~~-~LLt~~~~~~p~~l~~~~a~V~y~P-c~s~ 191 (331)
T COG3380 119 ----TVVLETRVTEVARTDNDWT-LHTDDGTRHTQFDDVVLAIPAPQTA-TLLTTDADDLPAALRAALADVVYAP-CWSA 191 (331)
T ss_pred ----hhhhhhhhhhheecCCeeE-EEecCCCcccccceEEEecCCCcch-hhcCcccccchHHHHHhhccceehh-HHHH
Confidence 8999999999998866554 888665 457899999999988874 56643 467877766655554443 4456
Q ss_pred EEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHHHHHHH
Q 006176 475 HMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELV 554 (658)
Q Consensus 475 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~ 554 (658)
.++|..+..-|- ...++++ .+..++-. ...-|.+.|.|.. +.+-. ..+|. .+.++..+|+.
T Consensus 192 ~lg~~q~l~~P~---~G~~vdg------~~laWla~---d~sK~g~~p~~~~-~vvqa---sp~wS---r~h~~~~~e~~ 252 (331)
T COG3380 192 VLGYPQPLDRPW---PGNFVDG------HPLAWLAR---DASKKGHVPDGEI-WVVQA---SPDWS---REHLDHPAEQV 252 (331)
T ss_pred HhcCCccCCCCC---CCcccCC------Ceeeeeec---cccCCCCCCcCce-EEEEe---CchHH---HHhhcCCHHHH
Confidence 677765532111 1122222 23333221 1224566777762 22211 23553 44555666776
Q ss_pred HHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCC-CCCCCCCCCCCCCCCCcEEEeCCCccCCCCh
Q 006176 555 ADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRG-TPKGLLGMPFNTTGINGLYCVGDSCFPGQGV 633 (658)
Q Consensus 555 ~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~-~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv 633 (658)
+..+-.... .+.+.--+... |.. .+.|. |.. |.. .....+ -..+--+||+||||+. |+=+
T Consensus 253 i~~l~aA~~-~~~~~~~~~p~---------~s~-~H~Wr--YA~-P~~~~~~~~L----~ad~~~~l~~cGDwc~-GgrV 313 (331)
T COG3380 253 IVALRAAAQ-ELDGDRLPEPD---------WSD-AHRWR--YAI-PNDAVAGPPL----DADRELPLYACGDWCA-GGRV 313 (331)
T ss_pred HHHHHHhhh-hccCCCCCcch---------HHH-hhccc--ccc-ccccccCCcc----ccCCCCceeeeccccc-Ccch
Confidence 633332222 33331111111 211 11111 221 111 010111 1133459999999985 5679
Q ss_pred hHHhhhHHHHHHHHHHHh
Q 006176 634 IAVAFSGVMCAHRVAADI 651 (658)
Q Consensus 634 ~ga~~sG~~aA~~Il~~l 651 (658)
+||.+||..+|+.|++.|
T Consensus 314 EgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 314 EGAVLSGLAAADHILNGL 331 (331)
T ss_pred hHHHhccHHHHHHHHhcC
Confidence 999999999999998764
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.82 E-value=6.6e-18 Score=182.33 Aligned_cols=325 Identities=17% Similarity=0.264 Sum_probs=193.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCC--------------------eEEccccccccC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG--------------------YTFDVGSSVMFG 215 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g--------------------~~~d~G~~~~~g 215 (658)
..+||||||+|++|+.+|..|+++|++|+++|+++..||+.+|+...+ |.+|..++.++.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 469999999999999999999999999999999999999999875322 223444555542
Q ss_pred CcCCCchHHHHHHHHhcCCcee--EeeCCCeEEEEc-CCCcEEEEcC-CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 006176 216 FSDKGNLNLITQALAAVGCEME--VIPDPTTVHFHL-PNDLSVRVHR-EYSDFVAELTSKFPHEKEGVLAFYGECWKIFN 291 (658)
Q Consensus 216 ~~~~~~~~~~~~ll~~lG~~~~--~~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 291 (658)
...+.+++...++.-. ..... ..+.+ .+|.....+. ..+.+...+...+ ++..+.+|+..+.....
T Consensus 83 ------~G~lv~lL~~s~v~ryleF~~l~--g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~~ 152 (443)
T PTZ00363 83 ------SGELVKILLHTDVTRYLEFKVID--GSYVYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYDE 152 (443)
T ss_pred ------CChHHHHHhhcCccceeeeEEec--eEEEEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhcc
Confidence 1245566666665322 22222 12222 4566666665 3444444444433 56666766655422100
Q ss_pred HhhhhhhhccchhhHhhhhhhcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH--
Q 006176 292 ALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV-- 369 (658)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~-- 369 (658)
.. + .. .....+...++.++++++..++..+.++.............+.|...+...
T Consensus 153 -------~~---~-~~-----------~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~ 210 (443)
T PTZ00363 153 -------ND---P-ET-----------HKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIK 210 (443)
T ss_pred -------CC---h-hh-----------hcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHH
Confidence 00 0 00 000112356788999999888888876654333221111122233222211
Q ss_pred -Hh---Hhh-cCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 370 -LC---DRH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 370 -~~---~~~-~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+. ..+ ...+.||.+|+++|+++|.+.++..|++++++++|++|..++ +++++|++.+|+++.|+.||++...+.
T Consensus 211 ~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 211 LYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence 11 111 124578999999999999999999999999999999999875 678889999999999999998655321
Q ss_pred HHhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCC-CCCcceeeecchhhhhccCCCceEEeccCCCCCCCCC
Q 006176 444 TFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP-DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP 522 (658)
Q Consensus 444 ~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap 522 (658)
. ... ....+....+.++.+.... +.....++++..- +.+ -..+|+..-+. +...+|
T Consensus 291 -------~-~~~-----------~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~--~~~-~~~i~v~~~s~-~~~~cp 347 (443)
T PTZ00363 291 -------D-KVK-----------KVGKVIRCICILNHPIPNTNNANSCQIIIPQKQ--LGR-KNDIYIMLVSS-NHGVCP 347 (443)
T ss_pred -------c-ccc-----------cccEEEEEEEEEcccccccCcCccEEEEECCcc--cCC-CCCEEEEEecC-CCCcCC
Confidence 1 000 0111223334445544111 1112235555421 111 12366544332 344689
Q ss_pred CCceEEEEEeccc
Q 006176 523 EGHHILHIFTICS 535 (658)
Q Consensus 523 ~G~~~l~~~~~~~ 535 (658)
.|+.++++.+...
T Consensus 348 ~g~~i~~~st~~~ 360 (443)
T PTZ00363 348 KGKYIAIISTTVE 360 (443)
T ss_pred CCcEEEEEEEecC
Confidence 9999988888753
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.1e-17 Score=170.48 Aligned_cols=432 Identities=15% Similarity=0.137 Sum_probs=241.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCe--EEEEecCCCCCcceee-EeeCCeEEccccccccCCcCCCchHHHHHHHHh
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR--VLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~--v~~~e~~~~~gg~~~t-~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (658)
....+|+|||||++||++||+|++++-+ |+|+|+.+++||..++ ...+|+.||-|+..+-...+.+ ..+.+++.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g--~~~l~lv~d 86 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGG--AETLDLVSD 86 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcch--hHHHHHHHH
Confidence 4568999999999999999999999865 5669999999999999 4467899999999997655433 346788999
Q ss_pred cCCceeEeeCCCe-----EEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhH
Q 006176 232 VGCEMEVIPDPTT-----VHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIY 306 (658)
Q Consensus 232 lG~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (658)
+|++.+.++-+.. .++....+....++........ ...+ .+.+. ++. .
T Consensus 87 LGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~---~~l~-------p~~k~---L~~--------------a 139 (491)
T KOG1276|consen 87 LGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLK---FSLQ-------PFGKP---LLE--------------A 139 (491)
T ss_pred cCccceeeecCCCChhhhheeeccCcccccCCcccccccc---cccC-------cccch---hHH--------------H
Confidence 9997665542211 1333333333333322211000 0000 00000 000 0
Q ss_pred hhhhhhcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHHh-------------
Q 006176 307 LFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLC------------- 371 (658)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~--~~~~------------- 371 (658)
.+++.++... -..-..+++.+++++.|.++....++++.+.-..+.++.+.++-..+ +...
T Consensus 140 ~l~e~fr~~~----~~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~ 215 (491)
T KOG1276|consen 140 FLRELFRKKV----SDPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIR 215 (491)
T ss_pred HHhhhccccC----CCCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHH
Confidence 0111111100 00122567888888888877777777777665555666665543211 0000
Q ss_pred Hh-------------------hcCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEE--CCCc-
Q 006176 372 DR-------------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRL--SDGR- 428 (658)
Q Consensus 372 ~~-------------------~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~--~~G~- 428 (658)
.. .....+-.+||.+.+.+++.+.|.+..+.|.++-++..+.... +++ .+.+ .++.
T Consensus 216 ~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~-~~tl~~~~~~~ 294 (491)
T KOG1276|consen 216 AKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNW-SLTLVDHSGTQ 294 (491)
T ss_pred HHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCc-eeEeEcCCCce
Confidence 00 0112455789999999999999998888888888888887543 222 2444 4443
Q ss_pred EEEcCEEEECCChhHHHhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCce
Q 006176 429 EFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSI 508 (658)
Q Consensus 429 ~i~ad~VV~a~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (658)
....++++.+.++.. +.++++. +.....+++.++. .+++.+|++.+..+....++.....+++..- ..++..+
T Consensus 295 ~~~~~~~~~t~~~~k-~a~ll~~--~~~sls~~L~ei~-y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~---~~~~~~L 367 (491)
T KOG1276|consen 295 RVVVSYDAATLPAVK-LAKLLRG--LQNSLSNALSEIP-YVPVAVVNTYYPKEKIDLPLQGFGLLVPSEP---KNGFKTL 367 (491)
T ss_pred eeeccccccccchHH-hhhhccc--cchhhhhhhhcCC-CCceEEEEEeccCcccccccccceeeccCCC---CCCCcee
Confidence 234455555776554 4567764 2233333444443 4567788888876532222332333333211 1233323
Q ss_pred EEeccCCCCCCCCCCCceEEEEEeccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHH
Q 006176 509 FLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRY 588 (658)
Q Consensus 509 ~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~ 588 (658)
-+-+.+...|.+.|.++.+++... ++...|... ....|++++.+.++|. ++. +++.......+. =|.
T Consensus 368 G~ifdS~~Fp~~~~s~~vtvm~gg-~~~~n~~~~-----~~S~ee~~~~v~~alq-~~L-gi~~~P~~~~v~---l~~-- 434 (491)
T KOG1276|consen 368 GTIFDSMLFPDRSPSPKVTVMMGG-GGSTNTSLA-----VPSPEELVNAVTSALQ-KML-GISNKPVSVNVH---LWK-- 434 (491)
T ss_pred EEEeecccCCCCCCCceEEEEecc-cccccCcCC-----CCCHHHHHHHHHHHHH-HHh-CCCCCcccccce---ehh--
Confidence 333344445556666654433322 222344332 2235778888888887 554 555543333221 011
Q ss_pred hcCCCCc--ccCCCCCCCCCCCCCCCCCCCC--CcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 006176 589 LARDQGT--YGPMPRGTPKGLLGMPFNTTGI--NGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (658)
Q Consensus 589 ~~~~~G~--yg~~p~~~~~~~~~~p~~~t~i--~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il 648 (658)
++. |..-........ ....+.. .+|+++|.| +.|.++..++++|+.+|.+++
T Consensus 435 ----~ciPqy~vGh~~~le~a---~~~l~~~~g~~l~l~G~~-y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 435 ----NCIPQYTVGHDDVLEAA---KSMLTDSPGLGLFLGGNH-YGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ----hcccceecchHHHHHHH---HHHHHhCCCCceEeeccc-cCCCChhHHHHhhHHHHHhhc
Confidence 111 110000000000 0011222 489999998 678999999999999998874
No 33
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.73 E-value=3.9e-16 Score=166.09 Aligned_cols=217 Identities=24% Similarity=0.378 Sum_probs=122.6
Q ss_pred CCccccCCC---hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCC
Q 006176 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (658)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~ 452 (658)
.+++.+.+| ...+++.|.+.+++.|++|+.+++|++|..+++++++|++.+|+ +.||.||+|+|++.. .++...
T Consensus 134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~--~l~~~~ 210 (358)
T PF01266_consen 134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP--QLLPLL 210 (358)
T ss_dssp EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH--HHHHTT
T ss_pred hhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce--eeeecc
Confidence 356778888 68999999999999999999999999999999999999999997 999999999999874 333321
Q ss_pred CCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEe
Q 006176 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (658)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~ 532 (658)
..+. .+. ......+.++.... .. .+.+.+.+.. ..+...+|+. |. + |...+- .
T Consensus 211 ~~~~-------~~~---~~~~~~~~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~-p~-------~-g~~~ig--~ 263 (358)
T PF01266_consen 211 GLDL-------PLR---PVRGQVLVLEPPES--PL-APAILFPPVI---FGPSDGVYIR-PR-------P-GGVLIG--T 263 (358)
T ss_dssp TTSS-------TEE---EEEEEEEEEEGCCS--GS-SSEEEEEEEC---ESSCTEEEEE-EE-------T-TEEEEE--E
T ss_pred cccc-------ccc---ccceEEEEEccCCc--cc-cccccccccc---ccccccceec-cc-------c-cccccc--c
Confidence 1110 000 11223333443211 11 1112111100 0111112221 10 1 322221 1
Q ss_pred ccccchhccc-Ch----hhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCC
Q 006176 533 ICSIEDWEGL-AQ----KDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGL 607 (658)
Q Consensus 533 ~~~~~~w~~l-~~----~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~ 607 (658)
.. ..|... .. ....+.+++ .+.+++.++ +++|.+.+..+.... .|.+...|+..+ +
T Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~~~p~l~~~~v~~~~-------------~g~r~~t~d~~p--~ 324 (358)
T PF01266_consen 264 AD--GNYDPGPSPEDSSGEDPDVDEE-IDELLERLA-RLLPGLGDAEVVRSW-------------AGIRPFTPDGRP--I 324 (358)
T ss_dssp SE--CEEEESSSHHHHSHHHHHHHHH-HHHHHHHHH-HHSGGGGGSEEEEEE-------------EEEEEEETTSEC--E
T ss_pred cc--ccccccccccccccccccccHH-HHHhHHHHH-HHHHHhhhccccccc-------------cceeeeccCCCe--e
Confidence 11 111111 11 111223444 778999998 899999875443221 233333344332 1
Q ss_pred CCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHH
Q 006176 608 LGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHR 646 (658)
Q Consensus 608 ~~~p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~ 646 (658)
++ ..+..+|||+++.. .|.|+..|..+|+.+|+.
T Consensus 325 ig---~~~~~~~l~~~~g~--~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 325 IG---ELPGSPNLYLAGGH--GGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EE---EESSEEEEEEEECE--TTCHHHHHHHHHHHHHHH
T ss_pred ee---ecCCCCCEEEEECC--CchHHHHHHHHHHHHhcC
Confidence 11 12457899999764 478999999999988874
No 34
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.73 E-value=4.3e-16 Score=154.55 Aligned_cols=274 Identities=18% Similarity=0.169 Sum_probs=156.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEe----eCCeEEccccccccCCcCCCchHHHHHHHH
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE----RDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~----~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (658)
..+.+|+|||+|++||+||+.|+++ ++|+++|++.+.||.++|.. -.|+.+|+|.++..+.. +..+.++++
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~t----Ypnl~~Lf~ 80 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERT----YPNLTRLFK 80 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCC----cchHHHHHH
Confidence 3567999999999999999999976 69999999999999999984 34678999999887643 345778999
Q ss_pred hcCCceeEeeCCCeEEEEcCC-CcEEEEcCCHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHhhhhhhhccchhhHh
Q 006176 231 AVGCEMEVIPDPTTVHFHLPN-DLSVRVHREYSDFVAELTSKFPHEKEGV--LAFYGECWKIFNALNSLELKSLEEPIYL 307 (658)
Q Consensus 231 ~lG~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (658)
.+|.+.+.- ...+.+.+.+ |..+.-......+ +. .+..+ .+|+.....+...-.. .. .+
T Consensus 81 ~iGv~t~as--~Msf~v~~d~gglEy~g~tgl~~L-------~a-qk~n~l~pRf~~mlaeiLrf~r~----~~-~~--- 142 (447)
T COG2907 81 TIGVDTKAS--FMSFSVSLDMGGLEYSGLTGLAGL-------LA-QKRNLLRPRFPCMLAEILRFYRS----DL-AP--- 142 (447)
T ss_pred HcCCCCccc--ceeEEEEecCCceeeccCCCccch-------hh-ccccccchhHHHHHHHHHHHhhh----hc-cc---
Confidence 999864322 2222222222 2222111111100 00 00000 1222222211110000 00 00
Q ss_pred hhhhhcChhhhhhHhhcccccHHHHHHHhcCCHHHH-HHHhhhhhhhccCCCCCc---hHHHHHHHHhHhh-------cC
Q 006176 308 FGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQT---PMINASMVLCDRH-------FG 376 (658)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~---p~~~~~~~~~~~~-------~~ 376 (658)
.........++.+++++..-..... .++..........+.... |+.. .+.++..+ ..
T Consensus 143 -----------~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~-~~~f~~nhGll~l~~rp 210 (447)
T COG2907 143 -----------SDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACN-FLVFTDNHGLLYLPKRP 210 (447)
T ss_pred -----------hhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHH-HHHHHhccCceecCCCC
Confidence 0011122345566665543333322 122111111111111111 2111 12222222 12
Q ss_pred CccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCCCCh
Q 006176 377 GINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPK 456 (658)
Q Consensus 377 g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~lp~ 456 (658)
-|..+.||+...++.|.+.+ +++|+++++|.+|..-.+.+. |+..+|++-.+|+||+|+.+...+ .||++ .-|+
T Consensus 211 ~wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~-l~~~~G~s~rFD~vViAth~dqAl-~mL~e-~sp~ 284 (447)
T COG2907 211 TWRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDGVV-LVNADGESRRFDAVVIATHPDQAL-ALLDE-PSPE 284 (447)
T ss_pred ceeEcccchHHHHHHHhccc---cceeecCCceeeeeeCCCceE-EecCCCCccccceeeeecChHHHH-HhcCC-CCHH
Confidence 35567899999999998877 468999999999998766654 556779988999999999998876 45654 3444
Q ss_pred HHHHHHHhhccCCc
Q 006176 457 EEENFQKLYVKAPS 470 (658)
Q Consensus 457 ~~~~~~~~~~~~~s 470 (658)
+ ++.+..+.++..
T Consensus 285 e-~qll~a~~Ys~n 297 (447)
T COG2907 285 E-RQLLGALRYSAN 297 (447)
T ss_pred H-HHHHHhhhhhhc
Confidence 4 446666666543
No 35
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.65 E-value=2.7e-14 Score=157.37 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=53.9
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++++.+.+|. ..++..|++.+++.|++|+.+++|++|.. ++. ..|++.+| ++.||+||+|++.|.
T Consensus 170 ~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 170 EGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred EEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEcccccc
Confidence 4567777775 68999999999999999999999999974 333 45778777 599999999999886
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.64 E-value=1.1e-12 Score=143.24 Aligned_cols=73 Identities=29% Similarity=0.476 Sum_probs=59.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCcceeeEe--eCCeEEccccccccCCcCCCchHHHHH
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQ 227 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~ 227 (658)
.....+|+|||||++||+||++|++. |++|+|+|+.+.+||++.++. ..||.++.|.+. .. .+..+++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~-----~y~~l~~ 92 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-EN-----HFECLWD 92 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cc-----hHHHHHH
Confidence 34457999999999999999999995 689999999999999998755 679999888664 22 4556777
Q ss_pred HHHhc
Q 006176 228 ALAAV 232 (658)
Q Consensus 228 ll~~l 232 (658)
+++.+
T Consensus 93 ll~~i 97 (576)
T PRK13977 93 LFRSI 97 (576)
T ss_pred HHHhc
Confidence 77665
No 37
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.62 E-value=1.3e-13 Score=148.37 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=117.6
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCCC
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQ 453 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~~ 453 (658)
+++.+.+|. ..++..+.+.+.+.|++++.+++|++|..+++.+ .|++++| ++.+|.||+|+|++.. .++....
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~~~--~l~~~~~ 212 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGV-TVTTADG-TYEAKKLVVSAGAWVK--DLLPPLE 212 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeE-EEEeCCC-EEEeeEEEEecCcchh--hhccccc
Confidence 445555554 5778888888889999999999999999877765 4888877 6999999999998863 4443211
Q ss_pred CChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEEec
Q 006176 454 LPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTI 533 (658)
Q Consensus 454 lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~ 533 (658)
+|- . ..-...+.++.............+.... ... ..+|+ .|. .+|..++ +-..
T Consensus 213 ~~i---------~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~-~~~y~-~p~-------~~~~~l~-ig~~ 266 (376)
T PRK11259 213 LPL---------T---PVRQVLAWFQADGRYSEPNRFPAFIWEV----PDG-DQYYG-FPA-------ENGPGLK-IGKH 266 (376)
T ss_pred CCc---------e---EEEEEEEEEecCCccCCccCCCEEEEec----CCC-ceeEe-ccC-------CCCCceE-EEEC
Confidence 111 0 0111112222110000000000000000 000 00121 111 1122121 1111
Q ss_pred cccchhcccChhhh--HHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 006176 534 CSIEDWEGLAQKDY--DAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (658)
Q Consensus 534 ~~~~~w~~l~~~~~--~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (658)
.. ..+.. .+..+ ....++..+.+++.+. +++|.+.+ ++.. +.|.+...|++.| .++
T Consensus 267 ~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~P~~~~-~~~~--------------~~g~~~~t~D~~P--~ig-- 324 (376)
T PRK11259 267 NG-GQEIT-SPDERDRFVTVAEDGAELRPFLR-NYLPGVGP-CLRG--------------AACTYTNTPDEHF--IID-- 324 (376)
T ss_pred CC-CCCCC-ChhhccCCCCcHHHHHHHHHHHH-HHCCCCCc-cccc--------------eEEecccCCCCCc--eee--
Confidence 10 00000 00000 0111445677788888 89998876 3221 2455555565544 122
Q ss_pred CCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 006176 612 FNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (658)
Q Consensus 612 ~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~ 650 (658)
....++|||++..+. |+|+..+...|+.+|+.|+..
T Consensus 325 -~~~~~~gl~~~~G~~--g~G~~~ap~~g~~la~li~~~ 360 (376)
T PRK11259 325 -TLPGHPNVLVASGCS--GHGFKFASVLGEILADLAQDG 360 (376)
T ss_pred -cCCCCCCEEEEeccc--chhhhccHHHHHHHHHHHhcC
Confidence 224478999988754 889999999999999999753
No 38
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.62 E-value=5.3e-14 Score=151.56 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=53.6
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+++.+.+|. ..+.+.|.+.+++.|++++.+++|++|..+++.+. |++.+| ++.+|.||+|+|.+.
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~-v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVT-VKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEE-EEeCCC-EEEeCEEEEecCcch
Confidence 445555654 57888999999999999999999999998777664 777766 699999999999875
No 39
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.61 E-value=2e-13 Score=148.92 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~ 444 (658)
++++.|.+|. ..+++.|.+.++++|++|+++++|++|..+++++++|++.++ ++.||+||+|+|+|..
T Consensus 188 ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 188 GGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred eEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 4566676653 588899999999999999999999999988888777887765 6999999999999863
No 40
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.61 E-value=2.2e-13 Score=148.09 Aligned_cols=208 Identities=21% Similarity=0.316 Sum_probs=116.7
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECCCcEEEcCEEEECCChhHH-HhhccCC
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDT-FGKLLKG 451 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VV~a~g~~~~-~~~Ll~~ 451 (658)
+++.+.+|. ..++..|.+.++++|++++.+++|++|... ++++.+|++.+| ++.+++||+|++.+.. +.++++.
T Consensus 171 a~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~ 249 (407)
T TIGR01373 171 GLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF 249 (407)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC
Confidence 444454553 467888999999999999999999999864 567777888888 5999999999998863 2333321
Q ss_pred CCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEE
Q 006176 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF 531 (658)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~ 531 (658)
.+|... . ...+.+..+. ++.. ..++...+ ..+|+. |. ++|. .+ +-
T Consensus 250 -~~~~~~---------~----~~~~~~~~~~-~~~~--~~~~~~~~--------~~~y~~-p~-------~~g~-~~-ig 294 (407)
T TIGR01373 250 -RLPIES---------H----PLQALVSEPL-KPII--DTVVMSNA--------VHFYVS-QS-------DKGE-LV-IG 294 (407)
T ss_pred -CCCcCc---------c----cceEEEecCC-CCCc--CCeEEeCC--------CceEEE-Ec-------CCce-EE-Ee
Confidence 122110 0 1111112111 1100 11111110 012221 11 1232 11 11
Q ss_pred eccc-cchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCC
Q 006176 532 TICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGM 610 (658)
Q Consensus 532 ~~~~-~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~ 610 (658)
.... ...... . ...+..+.+++.+. +++|.+++..+. ..|.|.+...|+..| .++.
T Consensus 295 ~~~~~~~~~~~-~------~~~~~~~~l~~~~~-~~~P~l~~~~~~-------------~~w~G~~~~t~D~~P--iIg~ 351 (407)
T TIGR01373 295 GGIDGYNSYAQ-R------GNLPTLEHVLAAIL-EMFPILSRVRML-------------RSWGGIVDVTPDGSP--IIGK 351 (407)
T ss_pred cCCCCCCccCc-C------CCHHHHHHHHHHHH-HhCCCcCCCCeE-------------EEeccccccCCCCCc--eeCC
Confidence 1110 001100 0 01234566777787 789999764221 123566666676654 2322
Q ss_pred CCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHH
Q 006176 611 PFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 649 (658)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~ 649 (658)
.+.+|+|++..+. |+|+..+...|+.+|+.|+.
T Consensus 352 ----~~~~gl~~a~G~~--g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 352 ----TPLPNLYLNCGWG--TGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred ----CCCCCeEEEeccC--CcchhhchHHHHHHHHHHhC
Confidence 2358999988654 88999999999999999874
No 41
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.57 E-value=4.1e-12 Score=138.32 Aligned_cols=214 Identities=16% Similarity=0.176 Sum_probs=116.1
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC-----cEEEcCEEEECCChhHH-Hh
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDT-FG 446 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VV~a~g~~~~-~~ 446 (658)
++++.+.+|. ..++..|.+.++++|++|+.+++|++|..+++.++ |.+.++ .++.||+||+|+|+|.. +.
T Consensus 184 ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~ 262 (410)
T PRK12409 184 GGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALA 262 (410)
T ss_pred eEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChHHHH
Confidence 4566676554 57788999999999999999999999998777764 444332 36899999999999863 22
Q ss_pred hccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCCCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCce
Q 006176 447 KLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHH 526 (658)
Q Consensus 447 ~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~ 526 (658)
..++. .+|- ....+.. +.+.+.....+... ....+.++ ..+ + ...+ .+.|.
T Consensus 263 ~~~~~-~~~i---------~p~~g~~-~~~~~~~~~~~~~~-p~~~~~~~------~~~--~-~~~~-------~~~~~- 313 (410)
T PRK12409 263 AMLGD-RVNV---------YPVKGYS-ITVNLDDEASRAAA-PWVSLLDD------SAK--I-VTSR-------LGADR- 313 (410)
T ss_pred HHhCC-CCcc---------ccCCceE-EEeecCCccccccC-Cceeeeec------CCc--E-EEEe-------cCCCc-
Confidence 22221 1111 0111111 11111111100000 00111111 000 1 1001 11232
Q ss_pred EEEEEeccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCC
Q 006176 527 ILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKG 606 (658)
Q Consensus 527 ~l~~~~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~ 606 (658)
.+..-.... .... . ....+..+.+++.+. +++|++++..+. .|.|.+...|++.|
T Consensus 314 ~~igg~~~~-~~~~---~----~~~~~~~~~l~~~~~-~~~P~l~~~~~~--------------~w~G~r~~t~D~~P-- 368 (410)
T PRK12409 314 FRVAGTAEF-NGYN---R----DIRADRIRPLVDWVR-RNFPDVSTRRVV--------------PWAGLRPMMPNMMP-- 368 (410)
T ss_pred EEEEEEEEe-cCCC---C----CCCHHHHHHHHHHHH-HhCCCCCccccc--------------eecccCCCCCCCCC--
Confidence 111111110 0100 0 011245667778887 899999764321 13566666666554
Q ss_pred CCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 006176 607 LLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (658)
Q Consensus 607 ~~~~p~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~~ 650 (658)
.+++ .+.+|||++..+ .|.|+..+...|+.+|+.|+..
T Consensus 369 iiG~----~~~~~l~~~~G~--~~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 369 RVGR----GRRPGVFYNTGH--GHLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred eeCC----CCCCCEEEecCC--cccchhhcccHHHHHHHHHcCC
Confidence 2332 236899998764 3679999999999999998653
No 42
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.55 E-value=7.5e-13 Score=131.51 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=57.4
Q ss_pred cccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEE--eCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 379 NYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVIL--EQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 379 ~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~--~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.-+.||. .+-.+++...+++.|+.++-+..|+.+.. +++..+.|++.+|..+.|+.+|+|+|+|. .+||+.
T Consensus 143 ~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~ 218 (399)
T KOG2820|consen 143 VNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT 218 (399)
T ss_pred ccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence 3445554 46778888999999999999999999874 34556679999999899999999999997 467763
No 43
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.53 E-value=2.3e-12 Score=148.37 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=57.7
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++++++.+|. ..++++|.+.+++ |++++.+++|++|..++++++ |++.+|..+.+|.||+|+|.+.
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 5677888875 6899999999988 999999999999998888776 8888887778999999999886
No 44
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=5.1e-13 Score=136.96 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=56.3
Q ss_pred CccccC-CChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCCh
Q 006176 377 GINYPV-GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (658)
Q Consensus 377 g~~~p~-gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~ 441 (658)
|..+|. .....|+++|.+.+++.|++|+++++|.+|..++... .|.+.+|+++.||.+|+|+|-
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f-~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGF-RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceE-EEEcCCCCEEEccEEEEecCC
Confidence 555666 7778999999999999999999999999999888544 488999988999999999993
No 45
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.49 E-value=5.3e-12 Score=136.30 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=55.3
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~ 444 (658)
++++.+.+|. ..+++.|.+.++++| ..+..+++|..+..++ ++..|.+.+|+ +.||+||+|+|+|..
T Consensus 143 ~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 143 GGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 4566677765 689999999999999 4566699999998764 66779898887 999999999999864
No 46
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.47 E-value=1.1e-11 Score=134.17 Aligned_cols=65 Identities=25% Similarity=0.185 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+.+.|++.+++.|++++.++.|+.+..+++.++.+...++.++.|+.||.|.|+...+.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 45556888999999999999999999999877665555555789999999999988877666664
No 47
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.42 E-value=3.6e-11 Score=131.15 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+-+.|.+.+++.|++|+.+++|++|..+++++++|. .+|+++.||.||.|.|....+.+.+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence 4555677888889999999999999998888877665 4666899999999999877655444
No 48
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.41 E-value=4e-11 Score=134.57 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=55.2
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC---C--cEEEcCEEEECCChhHH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWDT 444 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VV~a~g~~~~ 444 (658)
++++++. |. ..++.++++.+.++|++++++++|++|..+++++++|++.+ | .++.||.||+|+|+|..
T Consensus 137 ga~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 137 GAVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 3455553 33 57888899999999999999999999999888888888632 3 36899999999999973
No 49
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=4.4e-12 Score=135.88 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=49.1
Q ss_pred CccccCC-ChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 377 GINYPVG-GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 377 g~~~p~g-G~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+..||.- -..++.+.|.+.+++.|++|+++++|++|..+++++..|++++++++.||.||+|+|..
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence 4445554 35689999999999999999999999999999998888999777789999999999843
No 50
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.39 E-value=1.4e-12 Score=102.93 Aligned_cols=68 Identities=37% Similarity=0.551 Sum_probs=57.5
Q ss_pred EECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhc
Q 006176 162 VIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (658)
Q Consensus 162 iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (658)
|||||++||++|++|+++|++|+|+|+.+.+||++.++..+|+.+|.|++++.... ....+.++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~---~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPD---DYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETT---SCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCC---CchHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999999997542 224466776653
No 51
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.38 E-value=9.6e-11 Score=125.66 Aligned_cols=70 Identities=26% Similarity=0.487 Sum_probs=63.5
Q ss_pred hcCCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHH
Q 006176 374 HFGGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (658)
Q Consensus 374 ~~~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~ 444 (658)
..++.+.|.+|. ..++++|+..+.+.|+.|+.+++|++|..+.++..+|++..|. +++.+||.|+|.|+-
T Consensus 172 v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred heeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 446788888885 6899999999999999999999999999998888899999996 999999999999974
No 52
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.38 E-value=4.3e-10 Score=116.37 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC-CcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~-G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+++.|++++++++|+++..+++++. |.+.+ +.++++|.||.|+|.+..+.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence 5666788888889999999999999998887754 44443 457999999999998876655543
No 53
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.33 E-value=7.2e-11 Score=127.76 Aligned_cols=67 Identities=30% Similarity=0.488 Sum_probs=55.3
Q ss_pred CccccCCCh--HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCc-----EEEcCEEEECCChhHH
Q 006176 377 GINYPVGGV--GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-----EFYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG~--~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~-----~i~ad~VV~a~g~~~~ 444 (658)
+..|+.+=. .+++-..+..+.++|++++..++|+++..+++ +++|++.|.+ +++|+.||.|+|||..
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 444554443 47888888889999999999999999999999 8999987643 4889999999999973
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.32 E-value=7.9e-10 Score=120.58 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+-+.|.+.+++.|++++.+++|+.|..+++++.+|.. ++.++.||.||.|.|....+.+.+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~~l 170 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSMLGRSL 170 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhhhccc
Confidence 34455777888889999999999999988888877765 445799999999999877655443
No 55
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.31 E-value=6.5e-10 Score=119.92 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+.| ++|+.+++|++|..+++.+. |++++|+++.+|.||.|.|.++.+.+.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 67777888888888 99999999999998877765 88889988999999999998887766654
No 56
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.31 E-value=3.8e-10 Score=122.13 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+++.|++++.+++|++|..+++.++ |++.+|+++.+|.||.|.|.++.+.+.++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 6677788888889999999999999998877765 88888888999999999998887666554
No 57
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.31 E-value=1.5e-10 Score=123.81 Aligned_cols=324 Identities=17% Similarity=0.245 Sum_probs=171.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEee---------------------CCeEEccccccc
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER---------------------DGYTFDVGSSVM 213 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~---------------------~g~~~d~G~~~~ 213 (658)
+.+|||||+|.|+.-...|..|++.|.+|+.+|+++..||...++.. ..|.+|.-+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 45799999999999999999999999999999999999999887651 125677777777
Q ss_pred cCCcCCCchHHHHHHHHhcCCc--eeEeeCCCeEEEEcCCCcEEEEcCCHHHH-HHHHHHhCCCcHHHHHHHHHHHHHHH
Q 006176 214 FGFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREYSDF-VAELTSKFPHEKEGVLAFYGECWKIF 290 (658)
Q Consensus 214 ~g~~~~~~~~~~~~ll~~lG~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~l~~~~p~~~~~~~~~~~~~~~~~ 290 (658)
+. ...+.++|-..++. +++...... +.+.++....++....+. ...+... .++..+++|+..+...
T Consensus 82 ~a------~g~LV~lLi~S~V~rYLEFk~V~~~--~v~~~~~l~kVP~sr~dvf~s~~lsl--~eKR~lmkFl~~v~~~- 150 (438)
T PF00996_consen 82 YA------RGPLVKLLISSGVTRYLEFKAVDGS--YVYKNGKLHKVPCSREDVFKSKLLSL--FEKRRLMKFLKFVANY- 150 (438)
T ss_dssp ET------TSHHHHHHHHCTGGGGSEEEEESEE--EEEETTEEEE--SSHHHHHC-TTS-H--HHHHHHHHHHHHHHHG-
T ss_pred hc------cCHHHHHHHhCCcccceEEEEccee--EEEeCCEEeeCCCCHHHhhcCCCccH--HHHHHHHHHHHHHhhc-
Confidence 63 23455666666642 233332222 223466666666654432 2222111 1455666666544211
Q ss_pred HHhhhhhhhccchhhHhhhhhhcChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH-
Q 006176 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV- 369 (658)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~- 369 (658)
...... .....+....++.++++++.-++.++.++...............|+..+...
T Consensus 151 ------~~~~~~---------------~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri 209 (438)
T PF00996_consen 151 ------EEDDPS---------------THKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERI 209 (438)
T ss_dssp ------CTTBGG---------------GSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH
T ss_pred ------ccCCcc---------------hhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHH
Confidence 000000 0000123356778888888788888887753222221111112233322211
Q ss_pred --Hh--H-hh-cCCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 370 --LC--D-RH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 370 --~~--~-~~-~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~-~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+. . ++ .....||..|.++|++++.+.+.-.|+...+|++|++|.+ +++++.+|.. +|+++.|+.||.. +.
T Consensus 210 ~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d--ps 286 (438)
T PF00996_consen 210 KLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD--PS 286 (438)
T ss_dssp HHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE--GG
T ss_pred HHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC--Cc
Confidence 11 1 11 1346689999999999999999999999999999999998 4678888875 8889999999953 22
Q ss_pred HHHhhccCCCCCChHHHHHHHhhccCCceEEEEEeeecCcCCC-CCCcceeeecchhhhhccCCCceEEeccCCCCCCCC
Q 006176 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP-DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (658)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~a 521 (658)
. ++. + .+....+....+.++.+.... +.....++++..- ..+. ..+|+..-+ .+...+
T Consensus 287 y-----~p~-----~-------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~--~~~~-~dIyv~~~s-s~~~~C 345 (438)
T PF00996_consen 287 Y-----LPE-----K-------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQ--VGRK-SDIYVLQLS-SSTGVC 345 (438)
T ss_dssp G-----BGC-----G-------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGG--CTSS-S-EEEEEEE-GGGTSS
T ss_pred c-----Ccc-----c-------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcc--cCCC-CCeEEEEEC-CCcccc
Confidence 2 111 0 011112334444556554321 1122234455321 1111 125553322 133468
Q ss_pred CCCceEEEEEecc
Q 006176 522 PEGHHILHIFTIC 534 (658)
Q Consensus 522 p~G~~~l~~~~~~ 534 (658)
|.|..++++.+..
T Consensus 346 P~G~yi~~~St~~ 358 (438)
T PF00996_consen 346 PKGQYIAYVSTTV 358 (438)
T ss_dssp -TT-EEEEEEEEE
T ss_pred CCCcEEEEEEecc
Confidence 9999988887764
No 58
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.30 E-value=5e-11 Score=126.52 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=58.1
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcE-EEcCEEEECCChhHH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE-FYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~-i~ad~VV~a~g~~~~ 444 (658)
+.+.|.+|. ..++.+|++.++++|++|++|++|+.|...+++++.+.+.+|++ ++|+.||.|+|..+.
T Consensus 141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 455666663 68999999999999999999999999999887666688888877 999999999997754
No 59
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.29 E-value=5.1e-11 Score=111.95 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=38.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..||+|||+||+||+||++|+++|.+|+|+||+-.+||-+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 57999999999999999999999999999999999988554
No 60
>PLN02697 lycopene epsilon cyclase
Probab=99.28 E-value=1.4e-09 Score=120.19 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.+.|.+.+.+.|+++ ++++|++|..+++.+..|.+.+|.++.|+.||.|+|.+.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56677888888889998 688999998877766545667888899999999999887
No 61
>PRK06847 hypothetical protein; Provisional
Probab=99.27 E-value=4.3e-09 Score=113.18 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+.+.|.+.+.+.|++|+++++|++|..+++.+. |.+.+|+++.+|.||.|.|.+....+.+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGVT-VTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEE-EEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 6677788888888999999999999988777654 7788999999999999999887665544
No 62
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.27 E-value=1.1e-10 Score=123.61 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=52.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCCeE-EccccccccC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFG 215 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~d~G~~~~~g 215 (658)
+||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+.+....|.. .+.|+|.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t 60 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT 60 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec
Confidence 699999999999999999999999999999999999999887666654 4889999875
No 63
>PLN02463 lycopene beta cyclase
Probab=99.26 E-value=1e-09 Score=119.53 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.+.|.+.+.+.|++++ +++|++|..+++++ .|++++|+++.||.||.|+|...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 556668888888899986 57899999877765 48889998999999999999765
No 64
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.26 E-value=3.2e-09 Score=114.57 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEEC-CCcEEEcCEEEECCChhHHHhhccC
Q 006176 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS-DGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~-~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
..+.+.|.+.+.+.+ ++++.+++|+.+..+++.+. |++. +|+++.||.||-|=|.++.+.+.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 367788999998877 89999999999999988887 8888 9999999999999999998888777
No 65
>PRK06185 hypothetical protein; Provisional
Probab=99.25 E-value=2.6e-09 Score=116.16 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE--CCCc-EEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~--~~G~-~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+. |++++.+++|+++..+++++++|.+ .+|+ ++.||.||.|.|.++.+.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4556677777664 8999999999999988888876655 4564 7999999999999887777665
No 66
>PRK09126 hypothetical protein; Provisional
Probab=99.24 E-value=6.3e-10 Score=120.39 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=48.5
Q ss_pred HHHHHHHHH-HHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 388 IAKSLAKGL-ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 388 l~~~L~~~l-~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
+.+.|.+.+ ++.|++|+.+++|+++..+++.+. |++++|+++.+|.||.|.|..+...+.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQ-VTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 334455555 346999999999999987777654 88888989999999999998877666664
No 67
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=2.3e-09 Score=116.91 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECC-C--cEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~-G--~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+. |++++++++|++|..+++.+. |++.+ + .++.||.||.|.|.++.+.+.++
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 4666777777765 799999999999987777654 66653 3 35999999999999887766654
No 68
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.24 E-value=1.1e-10 Score=126.26 Aligned_cols=65 Identities=29% Similarity=0.387 Sum_probs=55.2
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+++.+.+|. ..+.++|.+.+++.|++++++++|++|..+++++ .|++.+| ++.+|.||+|+|.+.
T Consensus 137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeE-EEEECCC-EEEeCEEEECCCcch
Confidence 555666664 6899999999999999999999999998877765 5778777 699999999999886
No 69
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.23 E-value=2.7e-09 Score=115.02 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+ .|++++.+++|++|..+++.++ |.+.+|+++.||.||.|.|.++.+.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 677788888888 4999999999999988777664 77888888999999999999887666664
No 70
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.21 E-value=1.3e-10 Score=127.85 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=55.3
Q ss_pred CccccCCC-h---HHHHHHHHHHHHH----cC--cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHH
Q 006176 377 GINYPVGG-V---GGIAKSLAKGLAD----KG--SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG-~---~~l~~~L~~~l~~----~G--~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~ 444 (658)
+.+.|.+| . ..++..|.+.+++ +| ++|+++++|++|..+++..+.|++.+| ++.||.||+|+|+|+.
T Consensus 198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 55566543 2 6899999999998 78 789999999999988666667888877 5999999999999974
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=2.3e-10 Score=115.57 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-EEEEEEECC-----------CcEEEcCEEEECCChhHHH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRLSD-----------GREFYAKTIISNATRWDTF 445 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~-~v~gV~~~~-----------G~~i~ad~VV~a~g~~~~~ 445 (658)
.+...|.+.+.+.|++|++++.|++|..+++ ++.+|.+.. ..++.|+.||.|+|.+..+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v 175 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEV 175 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHH
Confidence 6777788889999999999999999988665 788876542 2368999999999976643
No 72
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=3.4e-10 Score=113.95 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCC--EEEEEEECC-----------CcEEEcCEEEECCChhHHHhh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG--KAVGVRLSD-----------GREFYAKTIISNATRWDTFGK 447 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~--~v~gV~~~~-----------G~~i~ad~VV~a~g~~~~~~~ 447 (658)
.+.+.|.+.+.+.|++++.++.|++|..+++ ++.+|.++. ..++.|+.||.|+|....+..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 5667788888899999999999999998777 688887742 236899999999996554333
No 73
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.20 E-value=6.1e-09 Score=112.68 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+. |++++.+++|+++..+++.+. |++.+|+++.||.||.|.|.++.+.+.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWE-LTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEE-EEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4556677777776 999999999999987777654 77888888999999999999988777665
No 74
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.20 E-value=4.9e-09 Score=113.42 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (658)
+||+||||||+|++||+.|+++|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 75
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.18 E-value=8e-09 Score=111.62 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+++.| ++++ +++|++|..+++.+. |++.+|+++.||.||.|.|.++.+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 56677888888887 8888 999999987777654 88888888999999999999877766665
No 76
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=2.6e-09 Score=116.03 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
..+.+.|.+.+.+.|++|+.+++|++|..+++.+. |++.+|+++.+|.||.|.|.+..+.+.++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVT-VTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 37788899999889999999999999988777764 77888988999999999998887766654
No 77
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.17 E-value=2.6e-10 Score=122.24 Aligned_cols=61 Identities=28% Similarity=0.255 Sum_probs=48.8
Q ss_pred CccccCCCh---HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+++++.+|. ..++..|.+.+.++ |++|+.+++|++|.. + .|++.+|+ +.||+||+|+|++.
T Consensus 133 ~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 133 GLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred EEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCCc-EEeCEEEECCCCCh
Confidence 455665553 57888999888775 999999999999963 2 47777775 78999999999986
No 78
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=1.4e-09 Score=121.32 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC--CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~--~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+++++|++|..+++++++|.+. +++ ++.+|.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 4688889999999999999999999999888888888763 333 588999999999654
No 79
>PRK08013 oxidoreductase; Provisional
Probab=99.17 E-value=7.2e-09 Score=112.44 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+.+. |++++++++|++|+.+++.+. |++.+|+++.||.||-|-|..+.+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4566677777775 799999999999987777654 77889999999999999999988877775
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.16 E-value=5.7e-11 Score=128.40 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=94.0
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||++.+||+.|+++. ...++.|..+++++.+......+..+..+......+|+||||||+||+||..|+++|+.|+|+
T Consensus 74 vcp~~~~ceg~cv~~~-~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~ 152 (457)
T COG0493 74 VCPLGNLCEGACVLGI-EELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF 152 (457)
T ss_pred cCCCCCceeeeeeecc-CCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence 7999999999999986 357899999999999999888776655444555689999999999999999999999999999
Q ss_pred ecCCCCCcceeeEeeCCeEEccccccccCCcCCCchHHHHHHHHhcCCce
Q 006176 187 EKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (658)
Q Consensus 187 e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG~~~ 236 (658)
|+.+..||+.. |.++.+..+. .......++++..|+++
T Consensus 153 e~~~~~GGll~-yGIP~~kl~k-----------~i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 153 ERVALDGGLLL-YGIPDFKLPK-----------DILDRRLELLERSGVEF 190 (457)
T ss_pred CCcCCCceeEE-ecCchhhccc-----------hHHHHHHHHHHHcCeEE
Confidence 99999999887 4455444332 13344556777777653
No 81
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.16 E-value=8.6e-09 Score=112.05 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+.+.|.+.+.+.|++|+.+++|++|..+++.+. |++.+|+++.||.||.|.|.++.+.++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 5666788888888999999999999988777665 788899889999999999999888777753
No 82
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.16 E-value=4.4e-09 Score=111.21 Aligned_cols=208 Identities=18% Similarity=0.311 Sum_probs=122.8
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCC
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~ 452 (658)
++++.+.+|. ..++..|++.++++|++++.+++|++|..+++++++|.+.+| ++.||.||+|+|+|.. .+..
T Consensus 124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~--~l~~-- 198 (337)
T TIGR02352 124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG--ELLP-- 198 (337)
T ss_pred eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh--hccc--
Confidence 4666677775 789999999999999999999999999998888888988877 6999999999999874 3443
Q ss_pred CCChHHHHHHHhhccCCceEEEEEeeecCcCC-CCCCcceeeecchhhhhccCCCceEEeccCCCCCCCCCCCceEEEEE
Q 006176 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLP-PDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF 531 (658)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~ 531 (658)
+|- ....+. . +.++.+..+ .+......+... .+|+ .|. ++|. +.+-
T Consensus 199 -~~~---------~~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~----------~~y~-~p~-------~~g~--~~iG 245 (337)
T TIGR02352 199 -LPL---------RPVRGQ-P--LRLEAPAVPLLNRPLRAVVYGR----------RVYI-VPR-------RDGR--LVVG 245 (337)
T ss_pred -CCc---------cccCce-E--EEeeccccccCCcccceEEEcC----------CEEE-EEc-------CCCe--EEEE
Confidence 221 111111 1 112211100 000000011100 0121 121 1232 1111
Q ss_pred eccccchhcccChhhhHHHHHHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 006176 532 TICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (658)
Q Consensus 532 ~~~~~~~w~~l~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (658)
.......|.. ...++..+.+++.+. +++|.+.+..+ ...+.|.+...++..| +++
T Consensus 246 ~~~~~~~~~~-------~~~~~~~~~l~~~~~-~~~P~l~~~~~-------------~~~~~g~r~~t~D~~p--iig-- 300 (337)
T TIGR02352 246 ATMEESGFDT-------TPTLGGIKELLRDAY-TILPALKEARL-------------LETWAGLRPGTPDNLP--YIG-- 300 (337)
T ss_pred EeccccCccC-------CCCHHHHHHHHHHHH-HhCCCcccCcH-------------HHheecCCCCCCCCCC--EeC--
Confidence 1111112211 012345667788888 88998865311 2234566665665444 122
Q ss_pred CCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHH
Q 006176 612 FNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 649 (658)
Q Consensus 612 ~~~t~i~gLylaG~~~~pG~Gv~ga~~sG~~aA~~Il~ 649 (658)
.....+|+|+++... |.|+..+...|+.+|+.|+.
T Consensus 301 -~~~~~~~~~~~~g~~--g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 301 -EHPEDRRLLIATGHY--RNGILLAPATAEVIADLILG 335 (337)
T ss_pred -ccCCCCCEEEEcccc--cCceehhhHHHHHHHHHHhc
Confidence 123468999988754 78999999999999999874
No 83
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.16 E-value=3.3e-10 Score=107.44 Aligned_cols=41 Identities=41% Similarity=0.695 Sum_probs=34.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
++||+|||||++||+||++|+++|++|+|+|+...+||...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 68999999999999999999999999999999998888543
No 84
>PRK07045 putative monooxygenase; Reviewed
Probab=99.15 E-value=1.2e-08 Score=110.31 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCE-EEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGK-AVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~-v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+.+.|.+.+.+ .|++++++++|++|..+++. ++.|++.+|+++.+|.||-|.|..+.+.+.+
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~ 171 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDDV 171 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHHh
Confidence 455667777754 57999999999999876543 4568888999999999999999998877743
No 85
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.15 E-value=1.7e-08 Score=109.06 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC------C--cEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD------G--REFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~------G--~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+.+.|++++.+ .|++|..+++.+. |++.+ | .++.||.||.|.|..+.+.+.++
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 45556778888889999765 6999987777654 65543 2 36899999999998887766654
No 86
>PRK08244 hypothetical protein; Provisional
Probab=99.15 E-value=1.3e-08 Score=113.42 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC--CC-cEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DG-REFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~--~G-~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+++.|++|+.+++|++|..+++.++ |++. +| +++++|.||.|.|.++.+.+.++
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 4455677778888999999999999988877664 5443 46 47999999999999988777664
No 87
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.15 E-value=5.4e-09 Score=112.96 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+.|+..+++++|+++..+++.+. |++++|+++.+|.||.|.|.++.+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 5667788888777655588999999988887765 88888989999999999998887666654
No 88
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.14 E-value=4.1e-09 Score=104.95 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcCcEEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCC
Q 006176 552 ELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQ 631 (658)
Q Consensus 552 e~~~~~il~~L~~~~~P~l~~~i~~~~~~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~ 631 (658)
+...++|+-.|. -..|.+....+. ..|.|.|..-.- ...+.++ ..+-..|||++-. |.|+
T Consensus 404 d~F~qkiwP~L~-nRVP~fetakVq-------------saWaGyyD~Ntf-D~ngViG---~HP~y~Nly~atG--Fsgh 463 (509)
T KOG2853|consen 404 DYFYQKIWPHLA-NRVPAFETAKVQ-------------SAWAGYYDHNTF-DDNGVIG---EHPLYTNLYMATG--FSGH 463 (509)
T ss_pred HHHHhhhhHHHH-hcccccceeeee-------------ehhccccccccc-ccCCccc---CCcceeeeeeeec--cccc
Confidence 345677888887 668888754442 223555543211 1112232 2334579999766 5599
Q ss_pred ChhHHhhhHHHHHHHHHH
Q 006176 632 GVIAVAFSGVMCAHRVAA 649 (658)
Q Consensus 632 Gv~ga~~sG~~aA~~Il~ 649 (658)
|+.-+...|+..|+.|++
T Consensus 464 Gvqqs~avgRAiaElIld 481 (509)
T KOG2853|consen 464 GVQQSPAVGRAIAELILD 481 (509)
T ss_pred chhcchHHHHHHHHHHhc
Confidence 999999999999999976
No 89
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=3.1e-09 Score=119.34 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=51.3
Q ss_pred cCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC-CCc--EEEc-CEEEECCChhHH
Q 006176 381 PVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYA-KTIISNATRWDT 444 (658)
Q Consensus 381 p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~a-d~VV~a~g~~~~ 444 (658)
..+| ..|+..|.+.+++.|++|+++++|++|..++++|+||... +|+ .+.+ +.||+|+|-+..
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 3455 8899999999999999999999999999878899998653 343 3556 579999997653
No 90
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.14 E-value=1.7e-08 Score=110.54 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
....+||+||||||+|++||..|+++|++|+|+|+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456999999999999999999999999999999974
No 91
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.13 E-value=1.6e-09 Score=119.91 Aligned_cols=62 Identities=31% Similarity=0.483 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC--CC--cEEEcCEEEECCChhH
Q 006176 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWD 443 (658)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VV~a~g~~~ 443 (658)
.++...+...|.+.+++.|++|+++++|++|..+++++++|.+. +| ..+.++.||+|+|.+.
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 34456788999999999999999999999999888899988763 33 3578999999999654
No 92
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.13 E-value=5.7e-11 Score=139.83 Aligned_cols=93 Identities=19% Similarity=0.067 Sum_probs=72.5
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCC--CCC----CC-CCCCCccEEEECCChhHHHHHHHHHHc
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGG--NEG----MS-RGADDYDAIVIGSGIGGLVAATQLAVK 179 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~iiG~g~~g~~~a~~l~~~ 179 (658)
.||++.+||+.|+++ ..|+.|..+|+++++........ ..+ .+ ..+..++|+|||||||||+||++|+++
T Consensus 252 VCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~ 328 (944)
T PRK12779 252 VCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLLAVE 328 (944)
T ss_pred cCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHHHHC
Confidence 799999999999888 25999999999998853321111 000 01 124578999999999999999999999
Q ss_pred CCeEEEEecCCCCCcceeeEeeCC
Q 006176 180 GARVLVLEKYVIPGGSSGYYERDG 203 (658)
Q Consensus 180 g~~v~~~e~~~~~gg~~~t~~~~g 203 (658)
|++|+|||+.+.+||..+ +.++.
T Consensus 329 G~~VtVfE~~~~~GG~l~-yGIP~ 351 (944)
T PRK12779 329 GFPVTVFEAFHDLGGVLR-YGIPE 351 (944)
T ss_pred CCeEEEEeeCCCCCceEE-ccCCC
Confidence 999999999999999775 33443
No 93
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.13 E-value=1.9e-09 Score=117.76 Aligned_cols=61 Identities=30% Similarity=0.492 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCc--EEEcCEEEECCChhHH
Q 006176 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 384 G~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~~ 444 (658)
+...+.+.|.+.++++|++|+++++|++|..++++|+||... +|+ ++.|+.||+|+|....
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 446889999999999999999999999999999999999886 454 4789999999997763
No 94
>PRK07588 hypothetical protein; Provisional
Probab=99.12 E-value=9.7e-09 Score=111.10 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+.+.|.+.+. .|++|+++++|++|+.+++.++ |++++|+++.+|.||-|.|.++...+.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 44455555553 3799999999999998887765 8889999899999999999988776654
No 95
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=1.6e-08 Score=109.59 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=49.0
Q ss_pred HHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 388 IAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 388 l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
+.+.|.+.+.+ .|++++++++|++|..+++.+. |++.+|.++.+|.||.|.|.+..+.+.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 34456666655 4799999999999987777665 88888888999999999998887666554
No 96
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.11 E-value=1.5e-08 Score=110.07 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 388 l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
+.+.|.+.+.+. |++++++++|++|..+++.+. |++.+|+++.||.||.|-|..+.+.+.++
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445566666654 799999999999988777654 88889999999999999998887777665
No 97
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.10 E-value=5.3e-10 Score=127.05 Aligned_cols=59 Identities=29% Similarity=0.460 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCEEEEEEE---CCCc--EEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~--~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~~ 444 (658)
..++..|++.++++|++|+.+++|++|..+ ++++++|++ .+|+ ++.+|.||+|+|+|..
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 588999999999999999999999999887 477777776 2344 5799999999999963
No 98
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.09 E-value=3.7e-08 Score=111.02 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEEC--CC--cEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+.+. |++|+++++|++|..+++.++ |++. +| ++++||.||-|.|..+.+.+.++
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 3445566767664 899999999999998877765 6664 56 36899999999999998877775
No 99
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.07 E-value=1.9e-10 Score=132.14 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=75.4
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||++.+||..|+++.. ..++.|..+|+++.+..................++|+|||+|++||++|++|++.|++|+|+
T Consensus 278 vCp~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~ 356 (654)
T PRK12769 278 VCPQDRLCEGACTLRDE-YGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVY 356 (654)
T ss_pred cCCCCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999999854 47999999999999877655543322222245689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||...
T Consensus 357 E~~~~~GG~l~ 367 (654)
T PRK12769 357 DRHPEIGGLLT 367 (654)
T ss_pred ecCCCCCceee
Confidence 99999999765
No 100
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=3.3e-08 Score=106.85 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.+.|.+.+.+.|++++ +.+|+.+..+++....|++.+|+++.|+.||.|+|.+.
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 566778888888899886 66899988774444558888888899999999999876
No 101
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.06 E-value=5.1e-08 Score=105.22 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 388 l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
+-..|.+.+.+. |++++.+++|++++.+++.++ |++++|.++.+|.||.|.|..+.+.+.++
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 444566665543 689999999999998877765 88899999999999999999988777664
No 102
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.06 E-value=2.1e-10 Score=131.22 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=78.9
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||++.+||..|+++.. ..++.|..+|+++.+.....++........+...+|+|||+|++||++|+.|++.|++|+|+
T Consensus 261 vCp~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 261 VCPQDRLCEGACTLKDH-SGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVF 339 (639)
T ss_pred cCCCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence 89999999999999854 47999999999999987766554432223345789999999999999999999999999999
Q ss_pred ecCCCCCcceeeEeeCCe
Q 006176 187 EKYVIPGGSSGYYERDGY 204 (658)
Q Consensus 187 e~~~~~gg~~~t~~~~g~ 204 (658)
|+.+.+||..+ +..+.+
T Consensus 340 e~~~~~GG~l~-~gip~~ 356 (639)
T PRK12809 340 DRHPEIGGMLT-FGIPPF 356 (639)
T ss_pred eCCCCCCCeee-ccCCcc
Confidence 99999999765 334443
No 103
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.05 E-value=4.5e-09 Score=115.91 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-EEEEEEE---CCCc--EEEcCEEEECCChhHH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~-~v~gV~~---~~G~--~i~ad~VV~a~g~~~~ 444 (658)
++++.|.+|. ..++.+|.+.++++|++|+++++|++|..+++ .+. |.+ .+|+ ++.||.||+|+|.|..
T Consensus 165 gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 165 AANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 3566677764 68999999999999999999999999987653 333 432 3342 6899999999998863
No 104
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=2.1e-09 Score=119.78 Aligned_cols=58 Identities=28% Similarity=0.431 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC---Cc--EEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VV~a~g~~~~ 444 (658)
..++..+++.++++|++++.+++|++|..+++.+ +|++.+ |+ ++.|+.||+|+|+|..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 5777888888999999999999999998877654 466543 53 6899999999999873
No 105
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.05 E-value=5.4e-09 Score=115.41 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=52.0
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCE-EEEEEE---CCCc--EEEcCEEEECCChhHH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKG-SEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~-v~gV~~---~~G~--~i~ad~VV~a~g~~~~ 444 (658)
+.+.|.+|. ..++++|.+.+++.| ++|+++++|++|..+++. +. |.+ .+|+ ++.|+.||+|+|.|+.
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 556666663 689999999999987 799999999999975543 43 443 3453 6899999999999874
No 106
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.04 E-value=2.9e-08 Score=103.45 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
..+++.+.+.+++.|++|+++++|++|+.+++.+.+|.+.+|+++.+|+||+|.|..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 478899999999999999999999999999998888999999999999999999954
No 107
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.04 E-value=1.2e-08 Score=115.53 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC--Cc-EEEcC-EEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR-EFYAK-TIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~--G~-~i~ad-~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+ ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 57888999999999999999999999999999999988754 33 36785 7999999775
No 108
>PRK12831 putative oxidoreductase; Provisional
Probab=99.03 E-value=2.6e-10 Score=125.50 Aligned_cols=89 Identities=19% Similarity=0.062 Sum_probs=75.2
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||.+..||..|.++.. ..|+.|..+++++.+......... ..+.....+||+|||||++||+||++|++.|++|+|+
T Consensus 92 vC~~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~~~~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 92 VCPQESQCEGKCVLGIK-GEPVAIGKLERFVADWARENGIDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred cCCCCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHHcCCCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999998855 479999999999988765544432 2334456789999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||.+.
T Consensus 170 e~~~~~GG~l~ 180 (464)
T PRK12831 170 EALHEPGGVLV 180 (464)
T ss_pred ecCCCCCCeee
Confidence 99999999764
No 109
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.02 E-value=4.4e-10 Score=123.89 Aligned_cols=90 Identities=18% Similarity=0.068 Sum_probs=74.8
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||.+.+||..|.++.. ..|+.|..+++++.+..................++|+|||+|++||++|..|++.|++|+|+
T Consensus 92 vC~~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~ 170 (467)
T TIGR01318 92 VCPQDRLCEGACTLNDE-FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVF 170 (467)
T ss_pred cCCCCCChHHhCcCCCC-CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 79999999999999854 47999999999998876554433322222345689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||..+
T Consensus 171 e~~~~~gG~l~ 181 (467)
T TIGR01318 171 DRHPEIGGLLT 181 (467)
T ss_pred ecCCCCCceee
Confidence 99999999765
No 110
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.02 E-value=1.9e-08 Score=108.51 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++.+++.+|. ..++.+|.+.+++ |++|+.+++|++|..+++++ .|++.+|+.+.||+||+|+|+|.
T Consensus 122 gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~-~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 122 GGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGW-QLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeE-EEEeCCCCEEEcCEEEEcCCccc
Confidence 3556676665 6899999999998 99999999999999877764 58888888799999999999987
No 111
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.02 E-value=3.7e-10 Score=134.29 Aligned_cols=88 Identities=17% Similarity=0.051 Sum_probs=74.1
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||++.+||..|+++.. ..|+.|..+++++++.........+ ......++|+|||||++||+||++|+++|++|+|+
T Consensus 383 vCp~~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~~~~~~~--~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~ 459 (1006)
T PRK12775 383 VCPQETQCEAQCIIAKK-HESVGIGRLERFVGDNARAKPVKPP--RFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVY 459 (1006)
T ss_pred cCCCCCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHHcCCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 89999999999999855 4799999999999887654443221 22335689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||..+
T Consensus 460 E~~~~~GG~l~ 470 (1006)
T PRK12775 460 EALHVVGGVLQ 470 (1006)
T ss_pred ecCCCCcceee
Confidence 99999999765
No 112
>PRK06753 hypothetical protein; Provisional
Probab=99.01 E-value=1.6e-07 Score=100.87 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+.+.|.+.+. +.+|+++++|++|..+++++. |++.+|+++.+|.||-|-|.++..++.+..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~~ 160 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVT-IHFADGESEAFDLCIGADGIHSKVRQSVNA 160 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEE-EEECCCCEEecCEEEECCCcchHHHHHhCC
Confidence 34444555543 358999999999987777664 788899999999999999999888776653
No 113
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.01 E-value=7.2e-09 Score=113.88 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEEC--CCc--EEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~--~G~--~i~ad~VV~a~g~~~~ 444 (658)
..+.+.|.+.+++.|++|+++++|++|..+ ++++++|++. +++ .+.++.||+|+|.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 478889999999999999999999999985 5678887764 343 3678999999997753
No 114
>PRK11445 putative oxidoreductase; Provisional
Probab=99.00 E-value=4.2e-07 Score=96.78 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE-CCCc--EEEcCEEEECCChhHHHhhccC
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~-~~G~--~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
|.+. .+.|++++.++.|++|..+++.+. |++ .+|+ ++.||.||.|.|..+.+.+.+.
T Consensus 105 L~~~-~~~gv~v~~~~~v~~i~~~~~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 105 LKSL-IPASVEVYHNSLCRKIWREDDGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HHHH-HhcCCEEEcCCEEEEEEEcCCEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 4443 456899999999999988777654 654 5664 6899999999998877666554
No 115
>PRK07121 hypothetical protein; Validated
Probab=99.00 E-value=1.3e-08 Score=113.26 Aligned_cols=60 Identities=30% Similarity=0.474 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECC-Cc--EEEc-CEEEECCChhH
Q 006176 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSD-GR--EFYA-KTIISNATRWD 443 (658)
Q Consensus 384 G~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~-G~--~i~a-d~VV~a~g~~~ 443 (658)
+...+.+.|.+.+++.|++|+++++|++|..+ ++++++|+..+ ++ .+.| +.||+|+|.+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 35678999999999999999999999999986 46888887743 33 4788 99999999765
No 116
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.00 E-value=4.5e-09 Score=115.27 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=51.2
Q ss_pred CccccCCCh---HHHHHHHHHHHHH-cCcEEEeCceeeEEEEe-CCEEEEEE---ECCCc--EEEcCEEEECCChhHH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLAD-KGSEILYKANVTKVILE-QGKAVGVR---LSDGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~-~~~v~gV~---~~~G~--~i~ad~VV~a~g~~~~ 444 (658)
+.+.|.++. ..+.++|.+.+.+ .|++|+++++|+.|..+ ++.++ |+ +.+|+ ++.||.||+|+|.|+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 455666653 6888999999865 48999999999999877 55544 43 34453 6899999999999873
No 117
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=4.1e-09 Score=104.72 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=129.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEee--CCe-EEccccccccCCcCCCchHHHHHHHHhcC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER--DGY-TFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~--~g~-~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (658)
++|.+|||+|++|+..|..|++.|++|.|+||++.+||.|-+... .|. .+-.|+|.++. +...+++.+...-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-----~~~~Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-----DNKRVWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-----CchHHHHHHhhhh
Confidence 479999999999999999999999999999999999999987664 565 44689999985 3344556555432
Q ss_pred CceeEeeCCCeEEEEcCCCcEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHhhhhhhc
Q 006176 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (658)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (658)
.-.... ..+ +.+.+|..+.++-+...+.+-+.+.+ ..+..+.|...... .....
T Consensus 76 e~~~Y~---hrV-la~~ng~~~~lP~nl~ti~ql~G~~~--~p~~a~~~i~~~~~---~~~~~----------------- 129 (374)
T COG0562 76 EFNPYQ---HRV-LALVNGQLYPLPFNLNTINQLFGKNF--TPDEARKFIEEQAA---EIDIA----------------- 129 (374)
T ss_pred hhhhhc---cce-eEEECCeeeeccccHHHHHHHhCccC--CHHHHHHHHHHhhc---ccccc-----------------
Confidence 111111 111 23456777777777665444333222 12222333322110 00000
Q ss_pred ChhhhhhHhhcccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH-----HhHhhcCC--ccccCCChH
Q 006176 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV-----LCDRHFGG--INYPVGGVG 386 (658)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~g--~~~p~gG~~ 386 (658)
.+++..+..-+++..+....++..+..-.++..+.+.|+.....+ ..+.+... ...|++|.-
T Consensus 130 -----------~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT 198 (374)
T COG0562 130 -----------EPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYT 198 (374)
T ss_pred -----------chhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHH
Confidence 112222223333333444555555544455566666655432211 11111111 236888888
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.+.|++ ..+++|++|+.-..+.... ++ +.+..||. +|+.+
T Consensus 199 ~~~~kMl~---hp~I~V~Lntd~~~~~~~~---------~~--~~~~~Vvy-tG~iD 240 (374)
T COG0562 199 AMFEKMLD---HPNIDVRLNTDFFDVKDQL---------RA--IPFAPVVY-TGPID 240 (374)
T ss_pred HHHHHHhc---CCCceEEecCcHHHHhhhh---------cc--cCCCceEE-ecchH
Confidence 87777754 3467999998766653221 11 44558888 45544
No 118
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.00 E-value=9.3e-08 Score=103.46 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCEEEEEEE-CCCc--EEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~-~~~~v~gV~~-~~G~--~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+.+.|.+.+.+.|++++++++|++|.. +++.+ .|++ .+|+ ++.+|.||-|-|..+...+.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 4455566667778999999999999976 33333 4666 4664 58999999999999888777653
No 119
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.99 E-value=3.5e-07 Score=103.34 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE--CCCc-EEEcCEEEECCChhHHHhhccCC
Q 006176 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 388 l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~--~~G~-~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
+-+.|.+.+.+. |++|+++++|+++..+++.++ +.+ .+|+ ++.+|.||.|.|..+.+.+.++.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT-LTVETPDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 344566777665 689999999999998777654 333 3554 68999999999999887777653
No 120
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=3.2e-09 Score=118.32 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC----cEEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG----REFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G----~~i~ad~VV~a~g~~~~ 444 (658)
..+...+++.++++|++++.+++|++|..+++.+ +|++.++ .++.|+.||.|+|+|..
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLW-RVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEE-EEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 4777888888999999999999999998876653 4766554 25899999999999873
No 121
>PRK06996 hypothetical protein; Provisional
Probab=98.95 E-value=1.6e-07 Score=101.82 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC---cEEEcCEEEECCCh-hHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATR-WDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VV~a~g~-~~~~~~Ll~ 450 (658)
.+.+.|.+.+++.|++++.+++|+++..+++.++ |++.+| +++.||.||-|-|. .....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 6677788889999999999999999987776665 667654 57999999999884 333334443
No 122
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.95 E-value=3.5e-07 Score=98.28 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.|-+.|.+.+.+.+ ++++++++|++|..+++.+. |.+.++ ++.||.||-|-|..+.+.+.+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYFA 168 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence 66777888888775 88999999999988777765 778776 79999999999999888776653
No 123
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.94 E-value=2.9e-08 Score=107.59 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.+.+.|.+.+.+.| ++++++++|+++..+++.+. |.+.+|+++.+|.||.|.|.++...+.+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 56667888887765 89999999999987777665 7788898899999999999988765544
No 124
>PLN02661 Putative thiazole synthesis
Probab=98.94 E-value=4.1e-08 Score=101.74 Aligned_cols=40 Identities=35% Similarity=0.695 Sum_probs=36.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCcc
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGS 195 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~ 195 (658)
.++||+|||+|++|++||++|++. |++|+|+|+...+||.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 468999999999999999999986 8999999999888773
No 125
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.94 E-value=4.9e-08 Score=95.43 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEEC---C-CcEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS---D-GREFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~~---~-G~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+++.|.+.+++.| +++.++. |.++..+.+++.+|-.. + +.....+++|+++|||+ .++++.
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~ 214 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEeecccccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence 77888888887776 8998875 88887667777766554 2 34567889999999998 456653
No 126
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=5.6e-08 Score=110.16 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC--CCc-EEEc-CEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR-EFYA-KTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~--~G~-~i~a-d~VV~a~g~~~ 443 (658)
..++..|.+.++++|++|+++++|++|..+++++++|... ++. ++.+ +.||+|+|.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5688999999999999999999999999888899888763 332 4788 99999999885
No 127
>PLN02985 squalene monooxygenase
Probab=98.93 E-value=9.5e-07 Score=98.38 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE--CCCcE--EEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGRE--FYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~--~~G~~--i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+.+.|.+.+.+. |++++.+ +|+++..+++.+.+|++ .+|++ +.||.||.|.|.++.+++.+..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~ 216 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLND 216 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhcc
Confidence 6777788888766 6888865 58888777777777776 35654 5689999999999888777653
No 128
>PRK07190 hypothetical protein; Provisional
Probab=98.93 E-value=1.4e-08 Score=112.45 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+.+.|++|+++++|++|..+++.++ |.+.+|+++.|+.||.|.|..+.+.+.++
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 3445577778888999999999999998887765 56678888999999999999988877765
No 129
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.92 E-value=1.1e-07 Score=97.32 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECC---------------CcEEEcCEEEECCChhH
Q 006176 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSD---------------GREFYAKTIISNATRWD 443 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~---------------G~~i~ad~VV~a~g~~~ 443 (658)
..+++..|.+.+++.|++|+-+..+.++.++ +|.|.||.++| |-++.|+.-|+|-|...
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 3588899999999999999999999999975 56788887754 22578888999888654
No 130
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.92 E-value=1.3e-09 Score=119.81 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=73.4
Q ss_pred CCCCCCCCCCcccccc-c--ccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeE
Q 006176 107 NFNGSTLRSEDLGCGE-S--ERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARV 183 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v 183 (658)
.||++..||..|.++. + ...++.|..+++++.+............+.....+||+|||+|++||++|+.|++.|++|
T Consensus 80 vC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V 159 (449)
T TIGR01316 80 VCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSV 159 (449)
T ss_pred CCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcE
Confidence 7999999999998875 1 347899999999988765544332222233456789999999999999999999999999
Q ss_pred EEEecCCCCCccee
Q 006176 184 LVLEKYVIPGGSSG 197 (658)
Q Consensus 184 ~~~e~~~~~gg~~~ 197 (658)
+|+|+.+.+||...
T Consensus 160 ~vie~~~~~GG~l~ 173 (449)
T TIGR01316 160 TVFEALHKPGGVVT 173 (449)
T ss_pred EEEecCCCCCcEee
Confidence 99999999998654
No 131
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.6e-08 Score=112.41 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+.+.|++|++++.++++..++++++||... +|+ .+.|+.||+|+|...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4678889888888899999999999999999999998764 333 578999999999765
No 132
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=3.6e-08 Score=111.04 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC-CCc--EEEcC-EEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VV~a~g~~~~ 444 (658)
..+...|.+.+++.|++|+++++|++|+.++++|++|... +|+ ++.|+ .||+|+|....
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 5688889999999999999999999999999999998773 443 46785 69999996653
No 133
>PRK06834 hypothetical protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=112.71 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+++.|++|+.+++|++|..+++.+. |++.+|+++.+|.||.|.|.++...+.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 4566677888888999999999999998877765 77788888999999999999887776664
No 134
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.91 E-value=1.8e-07 Score=102.74 Aligned_cols=63 Identities=25% Similarity=0.321 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcC---cEEEeCceeeEEEEe-------CCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKG---SEILYKANVTKVILE-------QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G---~~I~~~~~V~~I~~~-------~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+.+.+ ++++++++|++|..+ ++.+ .|++.+|+++.||.||-|-|..+.+.+.++
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 45566777777765 899999999999753 2334 488899999999999999999988887765
No 135
>PRK07538 hypothetical protein; Provisional
Probab=98.91 E-value=9.4e-07 Score=96.34 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHH-cCc-EEEeCceeeEEEEeCCEEEEEEECCC-----cEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLAD-KGS-EILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~-~G~-~I~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.|.+.|.+.+.+ .|. +|+++++|+++..+++.++ +.+.++ +++.||.||-|-|..+...+.+.+
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~ 173 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhcC
Confidence 555667777655 364 6999999999987665433 334332 479999999999999887776643
No 136
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=9.3e-09 Score=113.86 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+...|.+.+.+. |++++ .+.|++|..+++++.+|.+.+|.++.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4556677777766 78875 67899999999999999999999999999999999654
No 137
>PRK06184 hypothetical protein; Provisional
Probab=98.91 E-value=2.6e-08 Score=111.36 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE---CCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+.+.|++|+++++|++|..+++.++ |++ .+++++.||.||.|.|.++.+.+.++
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 3455677888888999999999999988777665 445 55668999999999999998877775
No 138
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.90 E-value=3.7e-08 Score=111.44 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEEC-CCc--EEEcC-EEEECCChhH
Q 006176 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS-DGR--EFYAK-TIISNATRWD 443 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~-~G~--~i~ad-~VV~a~g~~~ 443 (658)
...+...|.+.+++.|++|+++++|++|..+ +++|+||... +|+ ++.|+ .||+|+|.+.
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 3567888888899999999999999999986 6789998764 343 46787 5999999765
No 139
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.90 E-value=1.3e-08 Score=107.05 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
.+...+.+.+++ .+.+|+ +.+|++|..+++++.+|.+.+|+++.+|.||+|+|++
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 445556777776 467775 6889999999999999999999999999999999983
No 140
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.90 E-value=4.2e-08 Score=107.18 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEE-CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~-~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++ .|++|+++++|++|..+++++.+|.. .+++ .+.|+.||+|+|...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 4688888888875 49999999999999888888888653 3454 588999999999754
No 141
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.89 E-value=4.8e-07 Score=97.13 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+-+.+.+.+. .++.+++++.|++|..+++.+ .|++.+|+++.|+.||-|.|+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~-~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGV-LVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceE-EEEECCCCEEEeeEEEECCCccc
Confidence 45555777777 566788999999999887744 47889999999999999988543
No 142
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.89 E-value=5e-08 Score=110.58 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.+++.|++|++++.|++|..++++++||.. .+|+ .+.|+.||+|+|...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 367788888888889999999999999998899988865 3564 578999999999765
No 143
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.89 E-value=2.2e-09 Score=120.17 Aligned_cols=97 Identities=21% Similarity=0.061 Sum_probs=84.4
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||. -||++|+++-- ..|+.|-.++..+.+.++.+++..+-++.....++|+|||+||+||+||-.|.|.|+.|+|+
T Consensus 1738 vcpa--pcegactlgii-e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vy 1814 (2142)
T KOG0399|consen 1738 VCPA--PCEGACTLGII-EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVY 1814 (2142)
T ss_pred cCCC--CcCcceeeecc-cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEE
Confidence 5887 49999999965 47788999999999999999998887777778899999999999999999999999999999
Q ss_pred ecCCCCCcceeeEeeCCeEEc
Q 006176 187 EKYVIPGGSSGYYERDGYTFD 207 (658)
Q Consensus 187 e~~~~~gg~~~t~~~~g~~~d 207 (658)
||.+++||... |.++....|
T Consensus 1815 er~dr~ggll~-ygipnmkld 1834 (2142)
T KOG0399|consen 1815 ERSDRVGGLLM-YGIPNMKLD 1834 (2142)
T ss_pred EecCCcCceee-ecCCccchh
Confidence 99999999876 445544444
No 144
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.89 E-value=4.4e-08 Score=104.28 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC--cEEEcCEEEECCChh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRW 442 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VV~a~g~~ 442 (658)
.++.++|.+.++++|++++.+++|+++..+++++++|.+.++ .++.||+||+|+|.|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 488899999999999999999999999999999998887776 479999999999998
No 145
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=3.5e-08 Score=112.59 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 389 ~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
.+.|.+.+++.|++|++++.|++|..++++++||... +|+ .+.|+.||+|+|-+.
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 4667778888899999999999999988999999764 454 578999999999765
No 146
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.89 E-value=1.7e-09 Score=126.21 Aligned_cols=91 Identities=19% Similarity=0.050 Sum_probs=72.7
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||.+.+||..|++++....++.|..+++++.+..................+||+|||||++||+||++|+++|++|+|+
T Consensus 381 vC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~ 460 (752)
T PRK12778 381 VCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVF 460 (752)
T ss_pred cCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999998865336899999999988754332211111122345789999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||...
T Consensus 461 e~~~~~GG~l~ 471 (752)
T PRK12778 461 EALHEIGGVLK 471 (752)
T ss_pred ecCCCCCCeee
Confidence 99988999765
No 147
>PRK07236 hypothetical protein; Provisional
Probab=98.88 E-value=7e-08 Score=104.24 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred CcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 400 GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 400 G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
+++|+++++|++|..+++.++ |++.+|+++.+|.||.|-|..+.+.+.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVT-ARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 468999999999998877765 8889999999999999999888776655
No 148
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.87 E-value=4.1e-08 Score=106.23 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 384 G~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
....+.+.|.+.+++.|++++++++|++|..+++.+ .|++ +++++.+|.||+|+|...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 346889999999999999999999999997766644 4766 456799999999999754
No 149
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.86 E-value=1.3e-07 Score=107.15 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC-c--EEEc-CEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-R--EFYA-KTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-~--~i~a-d~VV~a~g~~~~ 444 (658)
..+...|.+.++++|++|+++++|++|..+++++++|.+.++ + ++.+ +.||+|+|.+..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 478899999999999999999999999988899999877543 3 4676 689999997754
No 150
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.86 E-value=5.7e-08 Score=109.53 Aligned_cols=42 Identities=48% Similarity=0.669 Sum_probs=38.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC--CCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~ 197 (658)
.++||+|||+|.+||+||..++++|.+|+|+||.. ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999998 7888654
No 151
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.85 E-value=2.7e-09 Score=124.77 Aligned_cols=88 Identities=23% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCC-CCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEG-MSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~ 185 (658)
.||+ .||..|.++.. ..++.|..+++++++........... .......+||+|||||+|||+||++|+++|++|+|
T Consensus 489 VC~h--~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV 565 (1012)
T TIGR03315 489 ICDH--QCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTV 565 (1012)
T ss_pred cCCc--chHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 7987 79999988754 47899999999988765433211111 11123568999999999999999999999999999
Q ss_pred EecCCCCCccee
Q 006176 186 LEKYVIPGGSSG 197 (658)
Q Consensus 186 ~e~~~~~gg~~~ 197 (658)
+|+.+.+||..+
T Consensus 566 ~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 566 FEKKEKPGGVVK 577 (1012)
T ss_pred EecccccCceee
Confidence 999999999875
No 152
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=1.2e-07 Score=107.67 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.+++.|++|++++.|++|..++ ++++||.. .+|+ .+.|+.||+|+|...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688899999999999999999999999875 78999875 3564 578999999999765
No 153
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.85 E-value=4.7e-08 Score=110.20 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC-CCc--EEEcC-EEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VV~a~g~~~ 443 (658)
..+...|.+.+++.|++|+++++|++|..++++|++|... +|+ .+.|+ .||+|+|...
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 4678889999999999999999999999888899998774 443 47786 5999998664
No 154
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.85 E-value=1.8e-08 Score=98.39 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
.+.+.|.+.+++.|.+++++++|++|..++++. .|++.+++++.||.||+|+|..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w-~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGW-TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTTE-EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccEE-EEEEEecceeeeeeEEEeeecc
Confidence 344556677788889999999999999998885 4999999889999999999953
No 155
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.84 E-value=8.1e-08 Score=107.33 Aligned_cols=58 Identities=16% Similarity=0.349 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEEC-CCc--EEEcC-EEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VV~a~g~~~ 443 (658)
..+...|.+.+.++ |++|+++++|++|..++++|++|... +|+ ++.|+ .||+|+|.+.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 35677777776654 99999999999999888999998763 343 47786 7999999764
No 156
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.83 E-value=3.4e-09 Score=117.23 Aligned_cols=89 Identities=20% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 006176 106 SNFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (658)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~ 185 (658)
-.||.+ ||..|.++.. ..++.|..+++++.+.........+..+.....++|+|||+|++||++|..|++.|++|+|
T Consensus 95 ~vC~~~--Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~v 171 (471)
T PRK12810 95 RVCPAP--CEGACTLNIN-FGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTV 171 (471)
T ss_pred CcCCch--hHHhccCCCC-CCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 379998 9999988863 5899999999999887654443122223344568999999999999999999999999999
Q ss_pred EecCCCCCccee
Q 006176 186 LEKYVIPGGSSG 197 (658)
Q Consensus 186 ~e~~~~~gg~~~ 197 (658)
+|+.+.+||...
T Consensus 172 ie~~~~~GG~l~ 183 (471)
T PRK12810 172 FERADRIGGLLR 183 (471)
T ss_pred EecCCCCCceee
Confidence 999999998654
No 157
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.83 E-value=1.5e-07 Score=107.00 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~-~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.+++.|++|+.++.|+++.. +++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 47888999999999999999999999998 6789999865 3564 578999999999764
No 158
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.82 E-value=1.7e-07 Score=106.54 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcC-cEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G-~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
.+...|.+.++++| ++|+.++.|++|..++++++||.. .+|+ .+.|+.||+|+|.+.
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 56677888888876 999999999999988888888753 3554 588999999999775
No 159
>PRK05868 hypothetical protein; Validated
Probab=98.82 E-value=9.2e-08 Score=102.64 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=44.9
Q ss_pred HcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 398 ~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
..|++++++++|++|..+++.++ |++++|+++++|.||-|-|.++..++.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 45899999999999987766665 88899999999999999999988877764
No 160
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=8.8e-08 Score=108.49 Aligned_cols=58 Identities=29% Similarity=0.403 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 478889999999999999999999999988888888763 4564 578999999999765
No 161
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.81 E-value=8.3e-07 Score=91.98 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=33.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
+.+|+|||||++||++|..|.|+|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 457999999999999999999999999999997665
No 162
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.81 E-value=7.4e-09 Score=120.54 Aligned_cols=88 Identities=22% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCC-CCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMS-RGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~ 185 (658)
.||+ .||..|.++.. ..++.|..+++++++............+ .....++|+|||||++||+||++|+++|++|+|
T Consensus 491 VCph--~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV 567 (1019)
T PRK09853 491 ICDH--QCQYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTV 567 (1019)
T ss_pred cCCc--hhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 7997 79999988754 4789999999998876543321111111 134578999999999999999999999999999
Q ss_pred EecCCCCCccee
Q 006176 186 LEKYVIPGGSSG 197 (658)
Q Consensus 186 ~e~~~~~gg~~~ 197 (658)
+|+.+.+||..+
T Consensus 568 ~Ek~~~~GG~lr 579 (1019)
T PRK09853 568 FEREENAGGVVK 579 (1019)
T ss_pred EecccccCccee
Confidence 999999999876
No 163
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.81 E-value=1.5e-07 Score=105.73 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEEC-------CC-cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS-------DG-REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~~-------~G-~~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+.++.|++|..++ +++.+|.+. ++ ..+.|+.||+|+|.+.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 4788899999999999999999999999875 688888663 22 3578999999999765
No 164
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.80 E-value=1.1e-07 Score=105.58 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEECC-C--cEEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~~~-G--~~i~ad~VV~a~g~~~~ 444 (658)
..+.+.|.+.+++ .|++|+.++.|++|..+++++++|.+.+ + ..+.++.||+|+|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4688889998887 6999999999999998888888887654 3 35889999999998763
No 165
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.80 E-value=6.7e-07 Score=100.95 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCc-EEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhcc
Q 006176 387 GIAKSLAKGLADKGS-EILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~-~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll 449 (658)
.|.+.|.+.+ +. .++.+++|++|..++++++ |++.+|+++.+|.||.|-|.++...+.+
T Consensus 195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAV---GEDVIRNESNVVDFEDSGDKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 5556665544 33 4678999999998888876 8889998899999999999998765554
No 166
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.1e-07 Score=105.38 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|...|.+.+.+.|++|++++.|+++..+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 568888998888899999999999999985 789999875 3564 478999999999765
No 167
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.80 E-value=2.4e-08 Score=106.11 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE-C-CCc--EEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL-S-DGR--EFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~-~-~G~--~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+-+.|.+.+++.|++|+++++|+++..+++.++.+.. . +|+ +++||.||-|-|.++.+.+.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 56677889999999999999999999988887653322 2 343 68999999999999887776653
No 168
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.79 E-value=2.3e-07 Score=102.44 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~ 444 (658)
..+.+.|.+.+++.|++++.+ .|+.+..+++++++|.. +|+.+.++.||+|+|.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 478889999999999999876 79999888888888877 5667999999999998764
No 169
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.8e-07 Score=106.77 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHc--------C-----cEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK--------G-----SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~--------G-----~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++. | ++|+.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 46888888888776 7 999999999999988888888764 3554 578999999999754
No 170
>PRK12839 hypothetical protein; Provisional
Probab=98.78 E-value=2e-07 Score=105.13 Aligned_cols=59 Identities=17% Similarity=0.374 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEEC--CCc-EEE-cCEEEECCChhHH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR-EFY-AKTIISNATRWDT 444 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~--~G~-~i~-ad~VV~a~g~~~~ 444 (658)
..++..|.+.+++.|++|+++++|++|..+ ++++++|... +|+ .+. ++.||+|+|.+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 568888999999999999999999999875 6889998753 444 233 4899999997753
No 171
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=3.5e-07 Score=103.80 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|.+.|.+.+.+.|++++.++.|+++..+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 468888999888999999999999999976 578989876 2454 578999999999765
No 172
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.78 E-value=1.2e-08 Score=112.91 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++++++++|++|..+++.+. |++.+|+++.+|.||+|+|...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 47788899999999999999999999987666554 6677888899999999999654
No 173
>PTZ00367 squalene epoxidase; Provisional
Probab=98.77 E-value=2.4e-06 Score=95.85 Aligned_cols=36 Identities=42% Similarity=0.713 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...+||+|||||++|+++|+.|+++|++|+|+||..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 346899999999999999999999999999999964
No 174
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.76 E-value=1.1e-07 Score=106.72 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC--CEEEEEEEC-CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQ--GKAVGVRLS-DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~--~~v~gV~~~-~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.++++ |++|++++.|+++..++ ++++||... +|+ .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 56888898888765 99999999999999863 788888653 454 378999999999754
No 175
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-06 Score=88.94 Aligned_cols=250 Identities=18% Similarity=0.255 Sum_probs=136.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeCC---------------------eEEccccccccC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG---------------------YTFDVGSSVMFG 215 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g---------------------~~~d~G~~~~~g 215 (658)
.|||+|+|.|+.-...+..|+..|.+|+.+||++..||...|..... +-+|.=+-.++.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmA 83 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMA 83 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhc
Confidence 49999999999999999999999999999999999999888765210 111111222211
Q ss_pred CcCCCchHHHHHHHHhcCCceeEeeCCCeEEEEcCCCcEEEEcCCH-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhh
Q 006176 216 FSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREY-SDFVAELTSKFPHEKEGVLAFYGECWKIFNALN 294 (658)
Q Consensus 216 ~~~~~~~~~~~~ll~~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 294 (658)
...+..+|-+.|+.--+.-......+.+.+|+...++... +.+...+...| ++..+.+|+.......+.-
T Consensus 84 ------n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e~~- 154 (440)
T KOG1439|consen 84 ------NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDEED- 154 (440)
T ss_pred ------cchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhhhc-
Confidence 1123334444443211111111223334455555555543 33333333333 3444555554332211100
Q ss_pred hhhhhccchhhHhhhhhhcChhhhhhHhhccc--ccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH---
Q 006176 295 SLELKSLEEPIYLFGQFFKRPLECLTLAYYLP--QNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV--- 369 (658)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~--- 369 (658)
. .++..+.. .++.+++.+++.......+.......+-.......|...+...
T Consensus 155 ------~-----------------~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~ 211 (440)
T KOG1439|consen 155 ------P-----------------KTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILL 211 (440)
T ss_pred ------c-----------------ccccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHH
Confidence 0 00111111 2455666666554444333321111111111223333222211
Q ss_pred HhH--hhc--CCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEE-eCCEEEEEEECCCcEEEcCEEEECC
Q 006176 370 LCD--RHF--GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGREFYAKTIISNA 439 (658)
Q Consensus 370 ~~~--~~~--~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~-~~~~v~gV~~~~G~~i~ad~VV~a~ 439 (658)
+.. ... ....||..|.++|++.+++...-.|++..+|.++.+|.. +++++.+|... ++...++.||+..
T Consensus 212 Y~~S~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~dp 285 (440)
T KOG1439|consen 212 YVRSFARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVICDP 285 (440)
T ss_pred HHHHHhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-CceeecceEEecC
Confidence 110 111 124689999999999999999999999999999999998 67777777543 3456778777643
No 176
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.76 E-value=1.6e-07 Score=103.05 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=52.5
Q ss_pred ccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCEEEEEEECC-CcEEEcCEEEECCChh
Q 006176 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSD-GREFYAKTIISNATRW 442 (658)
Q Consensus 380 ~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~--~~~v~gV~~~~-G~~i~ad~VV~a~g~~ 442 (658)
++.++...+.+.|.+.+++.|++|+++++|++|..+ ++++++|...+ +.++.++.||+|+|..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 344566789999999999999999999999999876 57888887643 3478999999999955
No 177
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.76 E-value=9.3e-08 Score=104.86 Aligned_cols=42 Identities=38% Similarity=0.508 Sum_probs=39.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..++|+|||||++||+||.+|++.|++|+|+|+++.+||...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 357999999999999999999999999999999999999665
No 178
>PRK08275 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.4e-07 Score=106.39 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+.++.|++|..+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467888999899999999999999999987 778888864 3564 478999999999764
No 179
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.75 E-value=6.9e-09 Score=119.20 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhh-----------cCCC----CCCCCCCCCccEEEECCChhHHH
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVE-----------IGGN----EGMSRGADDYDAIVIGSGIGGLV 171 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~iiG~g~~g~~ 171 (658)
.|| .||+.|+++ +..|+.|..+|+++.+..+.. .+.. ...+.....++|+|||+|||||+
T Consensus 323 VCp---~CE~aC~r~--~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLs 397 (1028)
T PRK06567 323 ICN---DCSKACIYQ--KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFS 397 (1028)
T ss_pred cCc---chHHHhcCC--CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHH
Confidence 688 499999988 357999999999888752110 1111 11123456789999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCc
Q 006176 172 AATQLAVKGARVLVLEKYVIPGG 194 (658)
Q Consensus 172 ~a~~l~~~g~~v~~~e~~~~~gg 194 (658)
||++|++.|++|+|+|+.+..|+
T Consensus 398 AA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 398 LSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred HHHHHHhCCCeEEEEcccccccc
Confidence 99999999999999999765544
No 180
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=2.5e-07 Score=104.98 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+.+ .|++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4678888888866 69999999999999988898888764 3564 478999999999765
No 181
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.75 E-value=2.4e-07 Score=105.55 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+.+.|++|+.++.++++..+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 468889999888899999999999999887 688999875 3464 578999999999765
No 182
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.74 E-value=8.9e-08 Score=109.52 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.+.+.|++|+.++.|++|..+++++.||... +|+ .+.|+.||+|||.+.
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4677788888899999999999999999988999888763 564 367999999999765
No 183
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.74 E-value=2.5e-07 Score=112.53 Aligned_cols=43 Identities=40% Similarity=0.527 Sum_probs=39.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
...+||+|||+|.+|++||..++++|.+|+|+||....||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4468999999999999999999999999999999999888653
No 184
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2.8e-07 Score=103.83 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCE-EEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~-v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|++++.|+++..++++ ++||.. .+|+ .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 467888988888899999999999999987664 888764 4564 588999999999765
No 185
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=3e-07 Score=104.31 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeC----CEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~----~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+++.|++|+.++.|++|..++ +++.||.. .+|+ .+.|+.||+|+|...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4688889999999999999999999999876 78888865 3554 478999999999765
No 186
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.73 E-value=1.5e-08 Score=112.26 Aligned_cols=89 Identities=21% Similarity=0.088 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 006176 106 SNFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (658)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~ 185 (658)
-.||+ .||..|.++.. ..++.|..+++++.+............+.....++|+|||+|++|+++|.+|++.|++|+|
T Consensus 95 rvC~~--~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v 171 (485)
T TIGR01317 95 RVCPA--PCEGACTLGIS-EDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTV 171 (485)
T ss_pred CcCCh--hhHHhccCCCC-CCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 47997 69999988865 3789999999998665544333222222233457999999999999999999999999999
Q ss_pred EecCCCCCccee
Q 006176 186 LEKYVIPGGSSG 197 (658)
Q Consensus 186 ~e~~~~~gg~~~ 197 (658)
+|+.+.+||...
T Consensus 172 ~e~~~~~gG~l~ 183 (485)
T TIGR01317 172 FEREDRCGGLLM 183 (485)
T ss_pred EecCCCCCceee
Confidence 999999998765
No 187
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.73 E-value=1.6e-06 Score=99.12 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCc--EEEeCceeeEEEEeCC---EEEEEEEC------CC--cEEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGS--EILYKANVTKVILEQG---KAVGVRLS------DG--REFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~--~I~~~~~V~~I~~~~~---~v~gV~~~------~G--~~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+-+.|.+.+.+.|+ +++++++|+++..++. .++ |++. +| ++++||.||-|-|..+.+++.++.
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi 218 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGR 218 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCC
Confidence 355667777877775 7789999999987642 233 5553 35 479999999999999988887753
No 188
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.73 E-value=1.1e-08 Score=111.55 Aligned_cols=58 Identities=31% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC---CcEEEcCEEEECCChhHHHhhccC
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
|.+.+.+.|++|++++.|.++..+++++++|++.+ ..++.|+.||-|+|-.++ ..+.+
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l-~~~aG 156 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDL-AALAG 156 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 44445778999999999999999999999998865 357999999999996543 34444
No 189
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.73 E-value=2.2e-07 Score=100.43 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC-CCc--EEEcCEEEECCChhHHHhhccCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
.+...|.+.+.+.|++++++.+++++...++....|++. +|+ ++++|.||-|-|..+.+.+.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 455567777777899999999988886533222346675 775 68999999999999988777653
No 190
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.72 E-value=4.8e-08 Score=105.24 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCc--EEEcCEEEECCChh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRW 442 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VV~a~g~~ 442 (658)
.++.+.|.+.+++.|++++++++|+++..+++++..|...+|+ .+.+|.||+|+|..
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 3789999999999999999999999999888888766665554 48999999999954
No 191
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.71 E-value=1.2e-06 Score=93.62 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=50.8
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCcceeeEe--eCCeEEccccccccCCcCCCchHHHHHHHH
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (658)
..++-|||+|+|+|+||.+|.|. |-+|+|||+.+.+||...... ..||..-.|-..- ..+..+++++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~------~~~eclwdLls 75 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME------FHYECLWDLLS 75 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc------chhHHHHHHHH
Confidence 35788999999999999999995 568999999999999876544 3465554442221 13455666666
Q ss_pred hc
Q 006176 231 AV 232 (658)
Q Consensus 231 ~l 232 (658)
..
T Consensus 76 ~I 77 (500)
T PF06100_consen 76 SI 77 (500)
T ss_pred hC
Confidence 54
No 192
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.71 E-value=2.4e-07 Score=96.14 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=40.5
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.+++.|+++++ ++|++|..+++.+. |++.+|+++.+|.||+|+|...
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~-v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFK-VKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeE-EEeCCCCEEEeCEEEECCCCCc
Confidence 55566778999998 89999988766554 7778888899999999999753
No 193
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.70 E-value=4.6e-07 Score=98.33 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE---CCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.|.+.|.+.+.+. |++++++++|+++..+++.++ |++ .+++++.+|.||-|-|.++...+.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 5667777777664 799999999999988776654 544 33457999999999999998887764
No 194
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.70 E-value=3e-07 Score=102.57 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC--Cc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~--G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.++ .|++|+.++.|++|..+++++.+|...+ |+ .+.|+.||+|+|.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457888888776 6999999999999998888988887643 33 578999999999765
No 195
>PRK06126 hypothetical protein; Provisional
Probab=98.69 E-value=1.2e-07 Score=107.18 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+-+.|.+.+++. |++|+++++|++|..+++.++ |++ .+|+ ++.+|.||.|.|.++.+.+.++
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 3455577777654 899999999999998877665 444 3464 6899999999999988777765
No 196
>PLN02815 L-aspartate oxidase
Probab=98.69 E-value=3.1e-07 Score=103.71 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEe-CC---EEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILE-QG---KAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~-~~---~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.++++ |++|+.++.+++|..+ ++ +++||.. .+|+ .+.|+.||+|+|-..
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46788888888765 8999999999999985 33 3788865 2454 468999999999765
No 197
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=5.7e-07 Score=101.99 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcC----cEEEeCceeeEEEEe-CCEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKG----SEILYKANVTKVILE-QGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G----~~I~~~~~V~~I~~~-~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
..|...|.+.+++++ ++++.++.++++..+ +++++||... +|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467778887776654 789999999999985 6899999764 343 478999999999765
No 198
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.68 E-value=1.8e-08 Score=111.17 Aligned_cols=89 Identities=20% Similarity=0.053 Sum_probs=71.2
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||.+.+|+..|.+++. ..++.|..+++.+.+.......... .......++|+|||||++||++|..|++.|++|+|+
T Consensus 92 vc~~~~~C~~~C~~~~~-~~~v~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 92 VCPQERLCEGACVRGKK-GEPVAIGRLERYITDWAMETGWVLF-KRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred cCCCccCHHHHhcCCCC-CCCcchHHHHHHHHHHHHhcCCCCC-CCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999988755 4578888888887765544433211 222345689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||...
T Consensus 170 e~~~~~gG~l~ 180 (457)
T PRK11749 170 EARDKAGGLLR 180 (457)
T ss_pred ccCCCCCcEee
Confidence 99999988654
No 199
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.68 E-value=2.6e-07 Score=102.21 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCc
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (658)
|||+|||+|++|+++|++|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 200
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.67 E-value=6.2e-07 Score=101.58 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|.+.|.+.+.+. |++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46778888877765 7999999999999998899888754 4564 588999999999765
No 201
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.67 E-value=4.5e-07 Score=102.94 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHH----cCcEEEeCceeeEEEEe-CCEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLAD----KGSEILYKANVTKVILE-QGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~----~G~~I~~~~~V~~I~~~-~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
.+...|.+.+++ .|++|+++++|++|..+ +++++||... +|+ .+.|+.||+|+|-..
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 455566555544 38999999999999885 4589998764 454 578999999999754
No 202
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.66 E-value=3.3e-07 Score=102.30 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEECC-Cc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~~-G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.++++ |++|+.++.|++|..+++++++|.+.+ ++ .+.|+.||+|+|...
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 47888899888875 899999999999988888999887643 32 588999999999764
No 203
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.66 E-value=6.7e-07 Score=101.10 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|.+.|.+.+.+. |++++.++.|++|..+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 46888898888764 7999999999999998999998864 3564 578999999999765
No 204
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.66 E-value=1.3e-06 Score=88.85 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCCEEEEEEECC--CcE--EEcCEEEECCChhHHHhhccCC
Q 006176 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSD--GRE--FYAKTIISNATRWDTFGKLLKG 451 (658)
Q Consensus 386 ~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~~v~gV~~~~--G~~--i~ad~VV~a~g~~~~~~~Ll~~ 451 (658)
+++++.|.+.+.. -++++..+ .|.++..+++.++||++++ |++ ..|..-|+|-|..+.+++-|-+
T Consensus 147 GRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~ 216 (509)
T KOG1298|consen 147 GRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD 216 (509)
T ss_pred cHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcC
Confidence 3788888876643 46777654 5999999999999998854 444 4567788888988877665554
No 205
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.64 E-value=3.9e-07 Score=102.09 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 388 l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.+.+.+++.|++++++++|++|..+++.. .|.+.+|+++.+|.||+|+|...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~-~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLI-EVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeE-EEEECCCCEEEcCEEEECCCCCc
Confidence 44446677788899999999999998876544 47788888899999999999743
No 206
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.64 E-value=2.8e-07 Score=100.51 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
.+.+.|.+.+. ++.++++++|++|..+++.+. |.+.+|+++.+|.||.|.|.++.+++.+.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l~ 166 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQ-VLFTDGTEYRCDLLIGADGIKSALRDYVL 166 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEE-EEEcCCCEEEeeEEEECCCccHHHHHHhc
Confidence 56666666653 356899999999988777654 88889989999999999999988766553
No 207
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.61 E-value=1.4e-06 Score=97.93 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCceeeEEEEeC------CEEEEEEEC---CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQ------GKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~------~~v~gV~~~---~G~--~i~ad~VV~a~g~~~ 443 (658)
..+...|.+.+.++ |++|+.++.|+++..++ ++++||... +|+ .+.++.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46778888888765 89999999999998764 789998763 354 478999999999765
No 208
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.61 E-value=2.5e-07 Score=102.51 Aligned_cols=56 Identities=25% Similarity=0.394 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-CcEEEeCceeeEEEEe-CCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADK-GSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+...|.+.+++. |++++ ...|+++..+ ++++.+|.+.+|..+.||.||+|+|.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 5566677888887 66776 4578888776 7789999999998999999999999884
No 209
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.61 E-value=4.7e-07 Score=101.36 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 388 l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.+.+.+++.|++++++++|++|..+++.. .|.+.+|+++.+|.||+|+|..
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCeE-EEEECCCCEEEeCEEEECCCCC
Confidence 33446666777899999999999998766544 4778888889999999999965
No 210
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=2.5e-07 Score=98.55 Aligned_cols=53 Identities=28% Similarity=0.576 Sum_probs=40.6
Q ss_pred HHHHHHHHHHc-CcEEEeCceeeEEEEeCC-EEEEEEECCCcEEEcCEEEECCChh
Q 006176 389 AKSLAKGLADK-GSEILYKANVTKVILEQG-KAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 389 ~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~-~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
...|.+.++.. +..|+ ...|++|.++++ +++||.+.+|..+.|+.||+|+|-+
T Consensus 103 ~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 103 RRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 34455555543 55665 456888888777 5999999999999999999999954
No 211
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.60 E-value=9.9e-07 Score=88.09 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcE--EEcCEEEECCChh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE--FYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~--i~ad~VV~a~g~~ 442 (658)
++-+.|...++..|+.+..+-+|.+....+++++.|.+.++.. +.||.+|+|+|..
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 6778899999999999999999999999999999999988764 6799999999854
No 212
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7e-07 Score=92.07 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.+.+.+.++..|+++.. ..|.++...++ ...|++.+|+ ++++.||+|+|...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 3444566666777888887 77888876665 4458888887 99999999999765
No 213
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.55 E-value=3.2e-06 Score=95.60 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeC---CEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQ---GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~---~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
.+...+.+.+.+.+++|+.++.|+++..++ |++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 444445566677778999999999999865 68999865 3554 478999999999875
No 214
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=9.1e-07 Score=98.12 Aligned_cols=41 Identities=37% Similarity=0.594 Sum_probs=37.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..|||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 4699999999999999999999999999999996 7788775
No 215
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.53 E-value=1e-06 Score=97.00 Aligned_cols=40 Identities=45% Similarity=0.645 Sum_probs=37.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
+|||+|||||++|++||..+++.|++|+|+|+. .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 589999999999999999999999999999984 7898775
No 216
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.53 E-value=8.3e-08 Score=110.09 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||. .||..|.++.. ..++.|..+++++.+..................++|+|||+|++||++|+.|++.|++|+|+
T Consensus 146 vC~~--~Ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 146 ICPA--PCEEACRRHGV-DEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CcCc--hhhHHHcCCCC-CCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 7998 69999977643 35778888998877654332221111222345689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||...
T Consensus 223 e~~~~~GG~l~ 233 (652)
T PRK12814 223 DANEQAGGMMR 233 (652)
T ss_pred ecCCCCCceee
Confidence 99999999764
No 217
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.52 E-value=1.5e-07 Score=106.62 Aligned_cols=87 Identities=17% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~ 186 (658)
.||. .||..|.++.. ..++.|..+++.+.+.........+ ........+|+|||+|++||++|+.|++.|++|+|+
T Consensus 91 vc~~--~ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~~~~~~-~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~ 166 (564)
T PRK12771 91 VCYH--PCESGCNRGQV-DDAVGINAVERFLGDYAIANGWKFP-APAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIF 166 (564)
T ss_pred cCCc--hhHHhccCCCC-CCCcCHHHHHHHHHHHHHHcCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 6888 79999988754 4678888888887765554433322 222345689999999999999999999999999999
Q ss_pred ecCCCCCccee
Q 006176 187 EKYVIPGGSSG 197 (658)
Q Consensus 187 e~~~~~gg~~~ 197 (658)
|+.+.+||..+
T Consensus 167 e~~~~~GG~l~ 177 (564)
T PRK12771 167 EAGPKLGGMMR 177 (564)
T ss_pred ecCCCCCCeee
Confidence 99999999664
No 218
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.8e-06 Score=95.66 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
.+|||+|||||++|+.||..|++.|++|+|+|+.+..||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 369999999999999999999999999999999878898764
No 219
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.50 E-value=2.5e-06 Score=88.59 Aligned_cols=65 Identities=32% Similarity=0.406 Sum_probs=45.8
Q ss_pred HHHHHH-HHHHHHHcCcEEEeCceeeEEEEe--CCEEEEEEECC--Cc----EEEcCEEEECCChhHHHhhccC
Q 006176 386 GGIAKS-LAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSD--GR----EFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 386 ~~l~~~-L~~~l~~~G~~I~~~~~V~~I~~~--~~~v~gV~~~~--G~----~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
...... |...+...|.+|++++.|++|..+ ++++++|++.+ +. .+.++.||+|+|+..+..-|+.
T Consensus 192 ~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 192 SSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp BHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred eehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 344444 444444449999999999999876 78899998743 33 4568999999998887544443
No 220
>PRK06116 glutathione reductase; Validated
Probab=98.49 E-value=1.5e-06 Score=95.91 Aligned_cols=41 Identities=44% Similarity=0.719 Sum_probs=37.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
.+|||+|||||++|++||..|+++|++|+|+|+. ..||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 3699999999999999999999999999999986 7888664
No 221
>PLN02507 glutathione reductase
Probab=98.48 E-value=1.8e-06 Score=96.14 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++++. |++.+|+++.+|.||+++|...
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~-v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIK-VITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEE-EEECCCcEEEcCEEEEeecCCC
Confidence 46777788889999999999999999987666543 6777888899999999999543
No 222
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.46 E-value=2.7e-06 Score=93.69 Aligned_cols=40 Identities=40% Similarity=0.676 Sum_probs=36.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
+|||+|||||++|++||..|++.|++|+|+|+. .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 599999999999999999999999999999995 5788765
No 223
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=2.4e-06 Score=94.61 Aligned_cols=41 Identities=46% Similarity=0.647 Sum_probs=37.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..|||+|||||++|++||..|++.|++|+|+|+.. .||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46999999999999999999999999999999976 888765
No 224
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.8e-06 Score=92.85 Aligned_cols=53 Identities=34% Similarity=0.485 Sum_probs=44.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCe-EEEEecCCCCCcceeeEeeCCeEEc
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYVIPGGSSGYYERDGYTFD 207 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~~~gg~~~t~~~~g~~~d 207 (658)
...+||+|||||++||++|+.|.++|.. ++||||++.+||.-+..+.++...+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~ 59 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLD 59 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEEC
Confidence 4578999999999999999999999999 9999999999997664444444443
No 225
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-06 Score=86.57 Aligned_cols=247 Identities=19% Similarity=0.241 Sum_probs=127.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceeeEeeC----------------C----eEEcccccccc
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD----------------G----YTFDVGSSVMF 214 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~----------------g----~~~d~G~~~~~ 214 (658)
...|||+|+|.|+.-...+..|+.+|.+|+.+|+++..|+...++... + +-+|.-+..++
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~ 83 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF 83 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc
Confidence 347999999999999999999999999999999999999988875411 1 12233233332
Q ss_pred CCcCCCchHHHHHHHHhcCCceeEeeCCCeEEEEcCCCcEEEEcCCHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Q 006176 215 GFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYS-DFVAELTSKFPHEKEGVLAFYGECWKIFNAL 293 (658)
Q Consensus 215 g~~~~~~~~~~~~ll~~lG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 293 (658)
. ...+..+|-+.|+.--..-......+.+.++....++.+-. .+...+...+ .+..+.+|++......+
T Consensus 84 A------~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~--eKr~vmrFl~~V~n~~~-- 153 (434)
T COG5044 84 A------NSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLF--EKRRVMRFLKWVSNYAE-- 153 (434)
T ss_pred c------cchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchh--hHHHHHHHHHHHHhHHh--
Confidence 1 11233344444542111111112223334445555544322 2222222222 34555566554221111
Q ss_pred hhhhhhccchhhHhhhhhhcChhhhhhHhhcccccHHHHH-HHhcCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH--
Q 006176 294 NSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIA-RKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL-- 370 (658)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~-- 370 (658)
.....+.+ +..+.+-+.+ ..|.-......++....... . ..+.|...+....
T Consensus 154 ~~~~~~~~----------------------~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~--l-dl~~p~re~~erIl~ 208 (434)
T COG5044 154 QKSTLQEL----------------------YESKDTMEFLFEKFGLSGATEEFIGHGIALS--L-DLDIPAREALERILR 208 (434)
T ss_pred hhhhchhh----------------------hhcccHHHHHHHHHccCcchhhhhhhhhhhh--c-cccCCchHHHHHHHH
Confidence 00011111 0111111222 22222122222221111110 0 1223322222111
Q ss_pred -hHh--hc--CCccccCCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEEC
Q 006176 371 -CDR--HF--GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISN 438 (658)
Q Consensus 371 -~~~--~~--~g~~~p~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a 438 (658)
+.. .. ....||+-|.++|++.+++...-.|+++.+|+++.+|...+. |.+|.. ++.+..|.+||..
T Consensus 209 Y~~Sf~~yg~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 209 YMRSFGDYGKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred HHHhhcccCCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccCC
Confidence 100 01 125689999999999999999999999999999999987766 344543 4456889999863
No 226
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.41 E-value=2.6e-06 Score=93.54 Aligned_cols=57 Identities=28% Similarity=0.452 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.++++|++++.++ |+++..+ ++.+++|++.+|+++.||.||-|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 3677778999999999999875 7777665 6678899999999999999999999755
No 227
>PRK09897 hypothetical protein; Provisional
Probab=98.41 E-value=4.7e-06 Score=92.54 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcC--cEEEeCceeeEEEEeCCEEEEEEECC-CcEEEcCEEEECCCh
Q 006176 387 GIAKSLAKGLADKG--SEILYKANVTKVILEQGKAVGVRLSD-GREFYAKTIISNATR 441 (658)
Q Consensus 387 ~l~~~L~~~l~~~G--~~I~~~~~V~~I~~~~~~v~gV~~~~-G~~i~ad~VV~a~g~ 441 (658)
...+.+.+.+.+.| ++++.+++|++|..+++++. |.+.+ |..+.+|.||+|+|.
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEE-EEECCCCeEEEcCEEEECCCC
Confidence 44455667777777 68888999999998887764 77655 467999999999994
No 228
>PRK13984 putative oxidoreductase; Provisional
Probab=98.40 E-value=3e-07 Score=105.18 Aligned_cols=88 Identities=23% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCCCCCCCCCcccccccccccccccccccccccchhhhcCCCC-CCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 006176 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNE-GMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (658)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~ 185 (658)
.||+ .||..|+++.. ..++.|..+++++.+....+..... .........+|+|||+|++|+++|..|+++|++|+|
T Consensus 235 vC~~--~Ce~~C~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~v 311 (604)
T PRK13984 235 VCTH--KCETVCSIGHR-GEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTV 311 (604)
T ss_pred cCCc--hHHHhhcccCC-CCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 7887 79999999854 4688888899888776543332111 112234568999999999999999999999999999
Q ss_pred EecCCCCCccee
Q 006176 186 LEKYVIPGGSSG 197 (658)
Q Consensus 186 ~e~~~~~gg~~~ 197 (658)
+|+.+.+||...
T Consensus 312 ie~~~~~gG~~~ 323 (604)
T PRK13984 312 YESLSKPGGVMR 323 (604)
T ss_pred EecCCCCCceEe
Confidence 999999998654
No 229
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.39 E-value=2.3e-06 Score=96.56 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=35.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcce
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 196 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~ 196 (658)
..|||+|||||++||+||.+|+++|++|+|+|+. ..||.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 3599999999999999999999999999999985 567754
No 230
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.37 E-value=4e-07 Score=101.40 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|...++.+ .|++.+|+++.+|.||+++|...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKI-KVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence 3577888899999999999999999998655544 47778888899999999999654
No 231
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=1.1e-06 Score=89.53 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC---C--cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VV~a~g~~~ 443 (658)
.++.+++.+.|+++|.+++++++|..+..++++.+.|++.+ + +++++|.+.+++|...
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 48899999999999999999999999998876433466543 3 3689999999999654
No 232
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.34 E-value=2.7e-06 Score=92.34 Aligned_cols=57 Identities=32% Similarity=0.361 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.+++.|++++++++|+++...++. ..|++++|+ ++.+|.|++|+|...
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 688999999999988999999999999887776 458888876 689999999999654
No 233
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=9.4e-06 Score=96.66 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHc----CcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADK----GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~----G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.|.+.+.++ ++++..+..+.++..+++++.||.. .+|+ .+.|+.||+|||...
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 35666666666544 5778888778898888899998875 3565 478999999999764
No 234
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.33 E-value=1.3e-05 Score=79.82 Aligned_cols=39 Identities=41% Similarity=0.596 Sum_probs=36.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
.|+|||+|+|||+|+..+...|-.|+++|+....||.+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999999999664
No 235
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=1e-05 Score=89.85 Aligned_cols=42 Identities=38% Similarity=0.630 Sum_probs=35.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC------CCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY------VIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~------~~~gg~~~ 197 (658)
..||++|||+|++|++||.+|++.|.+|+|+|+. ...||.|.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 3699999999999999999999999999999982 44566553
No 236
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.23 E-value=1.5e-05 Score=89.68 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHcCcEEEeCceeeEEEEeCCEEEEEEECCC-c---EEEcCEEEECCChhHHH
Q 006176 389 AKSLAKGL-ADKGSEILYKANVTKVILEQGKAVGVRLSDG-R---EFYAKTIISNATRWDTF 445 (658)
Q Consensus 389 ~~~L~~~l-~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-~---~i~ad~VV~a~g~~~~~ 445 (658)
...+...+ .+.|.+|++++.|++|..++++++||++.++ + .+.++.||+|+|+..+.
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 33333333 3557999999999999999999999988543 2 25789999999986654
No 237
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.23 E-value=3.4e-05 Score=81.75 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCceeeEEEEeCCEEEEEEEC---CC--cEEEcCEEEECCChhHHHhhccCCCCCC
Q 006176 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWDTFGKLLKGEQLP 455 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~-G~~I~~~~~V~~I~~~~~~v~gV~~~---~G--~~i~ad~VV~a~g~~~~~~~Ll~~~~lp 455 (658)
++.+++.|.+.++++ |++++++++|++|...++..+.|.+. .| .++.|+.|++.+|..++ .|+....+|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqksgi~ 254 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQKSGIP 254 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH--HHHHHcCCh
Confidence 479999999999888 99999999999999876653446553 23 47999999999998774 344433344
No 238
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.21 E-value=5.7e-06 Score=87.83 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
.++||+|||||.+|..||.-.+-+|.+|.++|+++...|.++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 469999999999999999999999999999999999888665
No 239
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.20 E-value=3e-05 Score=72.28 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCcEEE-eCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCCh
Q 006176 390 KSLAKGLADKGSEIL-YKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (658)
Q Consensus 390 ~~L~~~l~~~G~~I~-~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~ 441 (658)
+.+.+.+ ..|++|. ...+|+.|...++.. .|.+.+|..+.+|+||+|+|.
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDGY-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE-EEEECCCCEEEeCEEEECCCC
Confidence 3344444 4566654 567999999888775 488899999999999999983
No 240
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.19 E-value=4.9e-06 Score=92.25 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC---cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++|++++.+++|...++.+. |++.++ +++.+|.||+|+|...
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVK-VTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEecCCcceEEEeCEEEEEecCCc
Confidence 46778888999999999999999999986665543 666555 3799999999999543
No 241
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.17 E-value=2.5e-05 Score=63.77 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999998654
No 242
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.17 E-value=2.2e-05 Score=78.58 Aligned_cols=41 Identities=46% Similarity=0.682 Sum_probs=35.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC--CCCcce
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSS 196 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~ 196 (658)
..+||||||+|++||.||.+|+.+|++|+|+|... ..||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 36899999999999999999999999999999843 356633
No 243
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.16 E-value=1.4e-05 Score=84.76 Aligned_cols=53 Identities=32% Similarity=0.407 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCc-EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~-~i~ad~VV~a~g~~~ 443 (658)
.++.+...+.|+++|++|+++++|++|..+ +|++.+|+ ++.++.||+|+|...
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEEccCCeeEecCEEEEcCCCcC
Confidence 478888889999999999999999999643 47788887 499999999999553
No 244
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.15 E-value=2.1e-05 Score=83.45 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=48.4
Q ss_pred cCCCh-HHHHHHHHHHHHH-cCcEEEeCceeeEEEEeCC-EEEEEEECCC----cEEEcCEEEECCChh
Q 006176 381 PVGGV-GGIAKSLAKGLAD-KGSEILYKANVTKVILEQG-KAVGVRLSDG----REFYAKTIISNATRW 442 (658)
Q Consensus 381 p~gG~-~~l~~~L~~~l~~-~G~~I~~~~~V~~I~~~~~-~v~gV~~~~G----~~i~ad~VV~a~g~~ 442 (658)
..|.. ..+..+|.+.+++ .+++|+.++.+.+|..+++ .+.||.+.+. .++.++.||+|+|-.
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 34444 4678889888876 5899999999999999998 5558877433 367899999999954
No 245
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.12 E-value=2.3e-05 Score=87.46 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=38.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..++||+|||+|.|||.||..++.+|.+|+|+||....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 3578999999999999999999999999999999988876443
No 246
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.07 E-value=4.4e-05 Score=84.47 Aligned_cols=39 Identities=38% Similarity=0.480 Sum_probs=35.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
.|++|||+|++|+.+|..|++.|.+|+|+|+.. .||.|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 589999999999999999999999999999874 788775
No 247
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=5.1e-06 Score=91.92 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=38.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
+|||+|||+|++|++||.+++++|++|+|+|+...+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 59999999999999999999999999999998778899774
No 248
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.98 E-value=1.2e-05 Score=90.25 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=43.2
Q ss_pred HHHHHHHH-HHHcCcEEEeCceeeEEEEeCCEEEEEEECC--C---c-EEEcCEEEECCChhHHHh
Q 006176 388 IAKSLAKG-LADKGSEILYKANVTKVILEQGKAVGVRLSD--G---R-EFYAKTIISNATRWDTFG 446 (658)
Q Consensus 388 l~~~L~~~-l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~--G---~-~i~ad~VV~a~g~~~~~~ 446 (658)
-..++... ++..+.+|++++.|++|..+++++++|++.. + + .+.++.||+++|...+..
T Consensus 204 a~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~ 269 (542)
T COG2303 204 AARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPK 269 (542)
T ss_pred chhhcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHH
Confidence 33334443 4555699999999999999999999888743 3 2 246789999999876543
No 249
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=3.6e-05 Score=86.40 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=55.3
Q ss_pred CccccCCCh---HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCc--EEEcCEEEECCChhHH
Q 006176 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (658)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VV~a~g~~~~ 444 (658)
+++++ +|. ..++.++++.+.++|++|+.+++|++|..+++++++|++. +|+ ++.|+.||+|+|+|..
T Consensus 117 a~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 117 AVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 44555 343 5888999999999999999999999999988988888763 343 6899999999999974
No 250
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=8.4e-06 Score=89.57 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++++++++|++|..+++.+. +. .+|+++.+|.||+|+|...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~-v~-~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL-VV-TEDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE-EE-ECCeEEEcCEEEEeeCCCC
Confidence 45667777889999999999999999987665543 43 3567899999999999654
No 251
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=9.4e-06 Score=89.30 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++++++++|++|..+++.+. |.+.++ ++.+|.||+|+|...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~-v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQ-VHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEEcCC-eEEeCEEEEeecCCc
Confidence 46778888999999999999999999987666543 655555 489999999999654
No 252
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.93 E-value=9.8e-06 Score=89.71 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC--cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++++. |++.+| +++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 56778888999999999999999999988777665 666667 4799999999999654
No 253
>PRK14694 putative mercuric reductase; Provisional
Probab=97.91 E-value=1.2e-05 Score=89.18 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++.+. +.+.++ ++.+|.||+|+|...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~-v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFI-LETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEE-EEECCC-EEEeCEEEEccCCCC
Confidence 57788899999999999999999999987665443 655555 699999999999654
No 254
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.88 E-value=0.00012 Score=74.61 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCE--E--EEE-EECCCcEEE---cCEEEECCChh
Q 006176 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGK--A--VGV-RLSDGREFY---AKTIISNATRW 442 (658)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~--v--~gV-~~~~G~~i~---ad~VV~a~g~~ 442 (658)
-.-..+++..|...|+++|+++.+++.|+.|.+++.. . +.+ +..++++++ -|.|+++.|..
T Consensus 223 yNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 223 YNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred cchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 3445799999999999999999999999999987532 1 112 356676554 46788776643
No 255
>PRK06370 mercuric reductase; Validated
Probab=97.86 E-value=1.7e-05 Score=87.83 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE--C-CCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--S-DGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~--~-~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++++++++|++|..+++.+ .|.+ . ++.++.+|.||+|+|...
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCCc
Confidence 4567788888999999999999999998765543 2333 2 345799999999999543
No 256
>PLN02785 Protein HOTHEAD
Probab=97.86 E-value=0.00022 Score=80.63 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
...||+||||+|.+|+.+|..|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999999999999999999 689999999864
No 257
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.85 E-value=2.2e-05 Score=86.30 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=38.8
Q ss_pred CCccEEEECCChhHHHHHHHHHH--cCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAV--KGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 197 (658)
...+|+||||||+||.||..|++ .|++|+|||+.+.+||..+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 45789999999999999999997 7999999999999999776
No 258
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=1.8e-05 Score=87.58 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=37.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..|||+|||||++|++||.+|++.|++|+|+|+ ...||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 359999999999999999999999999999999 67888764
No 259
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.83 E-value=9.3e-05 Score=86.74 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccC
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~ 450 (658)
..|.+.|.+.+.+.|++|+++++|+++.. ....+|.||.|.|.++...+.+.
T Consensus 97 ~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~~~~D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 97 KRLLNILQARCEELGVKLVFETEVPDDQA-------------LAADADLVIASDGLNSRIRTRYA 148 (765)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hhcCCCEEEEcCCCCHHHHHHHH
Confidence 47888899999999999999999887631 01478999999999887766543
No 260
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=2.2e-05 Score=87.05 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC--CCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~--~G~--~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++|+++++|++|..+++.+. |++. +|+ ++.+|.||+|+|...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECcCccc
Confidence 56778889999999999999999999986655543 4443 663 699999999999543
No 261
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=2.1e-05 Score=85.16 Aligned_cols=42 Identities=38% Similarity=0.450 Sum_probs=39.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
...+|+|||||++||++|..|.+.|++|+|+||.+.+||...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 357899999999999999999999999999999999999766
No 262
>PTZ00058 glutathione reductase; Provisional
Probab=97.80 E-value=2.7e-05 Score=87.42 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCC-EEEEEEECCC-cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRLSDG-REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~-~v~gV~~~~G-~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++ ++. +...++ +++.+|.||+++|...
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCC
Confidence 46778888999999999999999999986543 343 444444 4799999999999543
No 263
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.79 E-value=2.2e-05 Score=86.87 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC---CCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~---~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|++++++++|++|..+++.. .|++. +++++.+|.||+|+|...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGK-IITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEEeECCCc
Confidence 4677788888999999999999999998765543 34443 235799999999999543
No 264
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.76 E-value=0.00031 Score=76.07 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|++++++++|++|.. ++.+ .|++.+|+++.+|.||+++|...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCEE-EEEECCCCEEECCEEEECCCCCh
Confidence 34456778999999999999975 4444 47788999999999999999643
No 265
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.76 E-value=0.00016 Score=79.63 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHcCcEEEeCceeeEEEEeCCEEEEEEE-CCCcEEE--cCEEEECCChhH
Q 006176 396 LADKGSEILYKANVTKVILEQGKAVGVRL-SDGREFY--AKTIISNATRWD 443 (658)
Q Consensus 396 l~~~G~~I~~~~~V~~I~~~~~~v~gV~~-~~G~~i~--ad~VV~a~g~~~ 443 (658)
+.+.|+++++++.|++|..+++.+. ++. .+|+++. +|++|+|+|...
T Consensus 66 ~~~~gv~~~~~~~V~~id~~~~~v~-~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 66 FIKSGIDVKTEHEVVKVDAKNKTIT-VKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHCCCeEEecCEEEEEECCCCEEE-EEECCCCCEEEecCCEEEECCCCCC
Confidence 4567899999999999988776544 432 2355666 999999999653
No 266
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.75 E-value=2.9e-05 Score=81.60 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=39.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCcceee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY 198 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t 198 (658)
...+++|||||++|++||..|++.|++|.++||.+..||+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 3567999999999999999999999999999999999998763
No 267
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.73 E-value=0.00061 Score=68.11 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCE----EEEEEECCCcEEEcCEEEECCChhH
Q 006176 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGK----AVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 385 ~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~----v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++.++..+.+.+...|+++.+|-+|+.|...+.. .+.|.-..|++++.+.||-+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 3578888999999999999999999999765432 1223333467899999999998654
No 268
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.73 E-value=7.9e-05 Score=84.94 Aligned_cols=44 Identities=30% Similarity=0.545 Sum_probs=38.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC-CCCCccee
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPGGSSG 197 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~-~~~gg~~~ 197 (658)
...+|||+|||+|++|..||..+++.|.+|+|+|+. ..+||.|-
T Consensus 113 ~~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 113 SDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 345799999999999999999999999999999974 36888775
No 269
>PRK13748 putative mercuric reductase; Provisional
Probab=97.73 E-value=3.1e-05 Score=88.02 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.+++.|++|++++.|++|..+++.+. +.+.++ ++.+|.||+|+|...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFV-LTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEE-EEecCC-eEEeCEEEEccCCCc
Confidence 46778888999999999999999999987666543 656555 599999999999654
No 270
>PRK14727 putative mercuric reductase; Provisional
Probab=97.72 E-value=3.7e-05 Score=85.46 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.+++.|++++++++|++|..+++.+. |.+.++ ++.+|.||+|+|...
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~-v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV-LTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEE-EEEcCC-eEEeCEEEEccCCCC
Confidence 46778888999999999999999999987666543 666555 599999999999765
No 271
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.71 E-value=0.00044 Score=74.39 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=41.0
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.+++.|++++++++|++|..+++.+ .|++.+|+++.+|.||+|+|..
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGI-RATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCEE-EEEEcCCcEEECCEEEECcCCC
Confidence 3445677899999999999998766554 4778899999999999999954
No 272
>PRK10262 thioredoxin reductase; Provisional
Probab=97.70 E-value=4.7e-05 Score=80.03 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=36.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
...+||+|||||++||+||.+|+++|++|+++|+. ..||.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 35689999999999999999999999999999965 5677554
No 273
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.67 E-value=0.00022 Score=78.01 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCCh
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~ 441 (658)
..+.+.+.+.++++|++++++++|++|.. + .|++++|+++.+|.||+++|.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~---~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K---EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C---EEEECCCCEEEccEEEEccCC
Confidence 46778888999999999999999999853 3 366889999999999999884
No 274
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.66 E-value=6.4e-05 Score=81.49 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=37.7
Q ss_pred CCccEEEECCChhHHHHHHHHH-HcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~-~~g~~v~~~e~~~~~gg~~~ 197 (658)
...+|+||||||+||.||.+|+ +.|++|+|+|+.+.+||..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR 80 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR 80 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence 3568999999999999999764 67999999999999999887
No 275
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.64 E-value=5.7e-05 Score=83.72 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++....|++.+|+++.+|.||+|+|...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 5788889999999999999999999998654443457777888899999999999543
No 276
>PLN02546 glutathione reductase
Probab=97.59 E-value=8.2e-05 Score=83.59 Aligned_cols=58 Identities=10% Similarity=0.115 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++....|.+.+++...+|.||+++|...
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence 4566778889999999999999999997643333346666665455899999999554
No 277
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.58 E-value=0.00079 Score=74.57 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+++|||+|.+|+.+|..|++.|.+|+++|+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 5899999999999999999999999999998764
No 278
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.54 E-value=0.0006 Score=74.00 Aligned_cols=51 Identities=29% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEE--EEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVG--VRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~g--V~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.++++|++++++..|.+|...++.... +...++..+.+|.++++++..
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 555678889999999999999987765544 567788889999999988744
No 279
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.52 E-value=0.00098 Score=73.84 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC---cEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|++++++++|++|..+++.+. |++.+| +++.+|.||+|+|...
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTDDGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 34456778999999999999987766554 666665 6799999999999653
No 280
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.51 E-value=9.7e-05 Score=82.44 Aligned_cols=40 Identities=38% Similarity=0.394 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
++|+|||||++||++|..|.+.|++|+++||.+.+||..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5799999999999999999999999999999999999765
No 281
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.49 E-value=0.00012 Score=78.21 Aligned_cols=35 Identities=37% Similarity=0.409 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987654
No 282
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.47 E-value=0.00012 Score=88.20 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=39.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 368999999999999999999999999999999999999665
No 283
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.47 E-value=0.00012 Score=78.36 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCc
Q 006176 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGG 194 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg 194 (658)
||+|||||++||++|+.|++. |++|+|+|+.+..||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999887666
No 284
>PRK06116 glutathione reductase; Validated
Probab=97.47 E-value=0.0014 Score=72.22 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|++++++++|++|..+++....|++.+|+++.+|.||+|+|...
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 3445677899999999999998765442347788888899999999999543
No 285
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0002 Score=75.24 Aligned_cols=36 Identities=42% Similarity=0.612 Sum_probs=32.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...|||||||||-||.-||...+|.|.+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 457999999999999999999999999988887643
No 286
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.43 E-value=0.0015 Score=71.88 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=40.1
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC-cEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|+++++++.|++|..+++....|++.+| +++.+|.||+++|...
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 445567889999999999999865443234777777 5699999999999554
No 287
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0015 Score=72.63 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=38.9
Q ss_pred HHHHHHHcCcEEEeCceeeEEEE-eCCEEEEEEECCCc--EEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~-~~~~v~gV~~~~G~--~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|+++++++.|++|.. +++++..+.+.+|+ ++.+|.||+|+|...
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 34456778999999999999975 24445445556664 689999999999654
No 288
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00038 Score=70.33 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEe--CCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~--~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+++.+|.++.+++.+++..-.+++++... .+....|++++|-.+.++.||+++|+..
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 34444556666666666666666676652 3445569999999999999999999654
No 289
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0012 Score=62.99 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.|.+.|.+..++.|.+|+.. .|.++..+..-.+ |.+ +.+.+.+|.||+|+|+.+
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~-l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFK-LWT-DARPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHhhcceeeee-ehhhccccCCCeE-EEe-cCCceeeeeEEEecccce
Confidence 56667888888889999875 4999988776554 544 445699999999999765
No 290
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.40 E-value=0.0019 Score=70.96 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 47999999999999999999999999999997654
No 291
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.39 E-value=0.0014 Score=77.22 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.++++|++|++++.|++|..++ +....|.+.+|+++.+|.||+|+|..
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 4556788899999999999997543 34556888999999999999999954
No 292
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.39 E-value=0.002 Score=71.29 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|++++++++|++|..+++++. |.+.+|+++.+|.||+++|...
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDGVV-VTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEECCCcEEEecEEEEeecCCc
Confidence 44556788999999999999987666654 7778888999999999998543
No 293
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.38 E-value=0.0027 Score=70.08 Aligned_cols=39 Identities=38% Similarity=0.479 Sum_probs=34.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCC
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIP 192 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~-g~~v~~~e~~~~~ 192 (658)
....||.||||||-||+..|..|++. ..+|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34679999999999999999999987 5799999997655
No 294
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.38 E-value=0.00019 Score=69.55 Aligned_cols=32 Identities=50% Similarity=0.762 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
||+|||||++|++||..|++.|++|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 295
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.36 E-value=0.0016 Score=76.68 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=41.4
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.++++|++|++++.|++|..+ +++.+|++.+|+++.+|.||+++|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCCCEEEcCEEEECCCCC
Confidence 445567889999999999999754 45667889999999999999999954
No 296
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.33 E-value=0.0026 Score=70.54 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+++|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4799999999999999999999999999998654
No 297
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.32 E-value=0.00022 Score=76.67 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=32.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCc
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (658)
||+|||||++|+.||+.|++.|++|+|+|+.+..+-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999998776543
No 298
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.31 E-value=0.0012 Score=77.84 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.8
Q ss_pred HHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 396 l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++++|+++++++.|++|..+.. .|.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~---~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEK---VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCc---EEEECCCcEEECCEEEECCCCCc
Confidence 4567999999999999977643 25678888899999999999654
No 299
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.31 E-value=0.00088 Score=71.70 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=36.8
Q ss_pred HHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 394 ~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+++.|++++.+ +|++|..+++. |.+.+|+++.+|++|+|+|...
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEecccCE---EEECCCCcccccEEEEccCCCC
Confidence 4456678998875 79999887663 6678888899999999999654
No 300
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.29 E-value=0.003 Score=69.55 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 393 ~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.++++|+++++++.|++|..+++.+ .|++.+|+++.+|.||+|+|...
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDGL-KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence 344677899999999999998655554 36677888899999999999543
No 301
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.28 E-value=0.0028 Score=70.40 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHH---cCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAV---KGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~---~g~~v~~~e~~~~~ 192 (658)
.+++|||+|..|+-.|..++. .|.+|+|+|+.+.+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 579999999999999976654 49999999987654
No 302
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.27 E-value=0.0029 Score=69.31 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.++++|+++++++.|++|..++ .+ +.+.+|+++.+|.||+|+|..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~-~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE-RV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC-CE--EEEcCCCEEEeCEEEECCCcc
Confidence 3445677899999999999997543 33 456788899999999999954
No 303
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.26 E-value=0.00041 Score=73.87 Aligned_cols=42 Identities=38% Similarity=0.462 Sum_probs=38.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
...+|+|||+|++|+.+|..|++.|++|+|+|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 457899999999999999999999999999999999998654
No 304
>PRK06370 mercuric reductase; Validated
Probab=97.26 E-value=0.0039 Score=69.09 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 58999999999999999999999999999997654
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.22 E-value=0.00094 Score=78.59 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=37.7
Q ss_pred HHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 396 l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
++++|++++++++|++|..++.. |.+.+|+++.+|++|+|+|...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k~---V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQKQ---VITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCCE---EEECCCcEeeCCEEEECCCCCc
Confidence 46679999999999999877643 5678888899999999999653
No 306
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.21 E-value=0.0039 Score=69.28 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=37.8
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECC--C--cEEEcCEEEECCChhH
Q 006176 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--G--REFYAKTIISNATRWD 443 (658)
Q Consensus 393 ~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~--G--~~i~ad~VV~a~g~~~ 443 (658)
.+.++++|++|++++.|++|..+++.+. |++.+ | +++.+|.||+++|...
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence 3445678999999999999987666553 55544 3 4689999999999543
No 307
>PRK02106 choline dehydrogenase; Validated
Probab=97.21 E-value=0.00036 Score=79.17 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHcCcEEEeCceeeEEEEeCCEEEEEEECCC--c--EEEcCEEEECCChhHHHhhcc
Q 006176 397 ADKGSEILYKANVTKVILEQGKAVGVRLSDG--R--EFYAKTIISNATRWDTFGKLL 449 (658)
Q Consensus 397 ~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G--~--~i~ad~VV~a~g~~~~~~~Ll 449 (658)
...+.+|++++.|++|..+++++++|++.+. . .+.++.||+|+|...+..-|+
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl 268 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQ 268 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence 3457999999999999999889999988543 2 357899999999887644343
No 308
>PRK14694 putative mercuric reductase; Provisional
Probab=97.21 E-value=0.004 Score=69.02 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 57999999999999999999999999999874
No 309
>PRK07846 mycothione reductase; Reviewed
Probab=97.20 E-value=0.0039 Score=68.74 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=36.9
Q ss_pred HcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 398 ~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.|++++++++|++|..+++++. |++.+|+++.+|.||+|+|...
T Consensus 218 ~~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQDGSGVT-LRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred hcCeEEEeCCEEEEEEEcCCEEE-EEECCCcEeecCEEEEEECCcc
Confidence 45789999999999987666543 7777888899999999999654
No 310
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0042 Score=66.50 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcC---CeEEEEecCCCCCcce
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG---ARVLVLEKYVIPGGSS 196 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g---~~v~~~e~~~~~gg~~ 196 (658)
+++|+|||+|++|+..|.+|.+.- ..|.|+|+....|+-.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 368999999999999999999842 2399999998887644
No 311
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.19 E-value=0.0049 Score=68.16 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+++|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999999864
No 312
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.17 E-value=0.004 Score=69.00 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
.+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 57999999999999999999999999999987543
No 313
>PRK14727 putative mercuric reductase; Provisional
Probab=97.16 E-value=0.0041 Score=69.13 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999874
No 314
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.14 E-value=0.0092 Score=63.45 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=50.8
Q ss_pred Ccccc-CCChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC-cEEEcCEEEECCChhH
Q 006176 377 GINYP-VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWD 443 (658)
Q Consensus 377 g~~~p-~gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VV~a~g~~~ 443 (658)
|..|| ..-...+.++|...+++.|++|+++++|++| ++++ ..|.+..+ .++.||.||+|+|-.+
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 55666 4456899999999999999999999999999 4444 34766543 4699999999999543
No 315
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.12 E-value=0.0054 Score=67.50 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999998654
No 316
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.12 E-value=0.0041 Score=68.34 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=37.3
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.++++|+++++++.|++|. +. .|++.+|+++.+|.||+++|...
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCCc
Confidence 4455678899999999999995 22 36677888899999999999543
No 317
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0062 Score=67.45 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+++|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3579999999999999999999999999999864
No 318
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.10 E-value=0.00053 Score=75.82 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC--cEEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VV~a~g~~~ 443 (658)
..+.+.+.+.++++|+++++++.|++|..+++.+. +.. +| +++.+|.||+|+|...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~-~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQAL-FEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEE-EEE-CCceEEEEeCEEEEecCCcc
Confidence 46788888999999999999999999976655433 433 34 3689999999999554
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.09 E-value=0.0055 Score=67.51 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
+.+.++++|++++++++|++|.. ++++..|.+.++ ++.+|.||+|+|..
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 44556788999999999999964 445555666544 69999999999964
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.09 E-value=0.0054 Score=69.75 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999975
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.00 E-value=0.0083 Score=66.17 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=36.3
Q ss_pred cCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 399 KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 399 ~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.|+++++++.|++|..+++++. |++.+|+++.+|.||+++|...
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 4789999999999987666654 6777888899999999999543
No 322
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.00 E-value=0.0054 Score=66.00 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.9
Q ss_pred HHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 396 l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+++.|++++++++|++|..++.. |.+ +++++.+|++|+|+|...
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhCCCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCCCC
Confidence 46679999999999999876653 334 566799999999999643
No 323
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.94 E-value=0.00088 Score=70.70 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=26.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (658)
.+|+|+||.||++|+.|..|...+ .++..||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999876 89999998653
No 324
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.93 E-value=0.021 Score=64.77 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEe-CCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|...|.+.+.+.|++|+.++.++++..+ +|+|+||.. .+|+ .+.|+.||+|||...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 578899999999999999999999999985 789999875 3565 478999999999765
No 325
>PTZ00058 glutathione reductase; Provisional
Probab=96.90 E-value=0.012 Score=66.32 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 46899999999999999999999999999998764
No 326
>PRK07846 mycothione reductase; Reviewed
Probab=96.87 E-value=0.001 Score=73.39 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
+||++|||+|++|..||.. ..|.+|+|+|+. ..||.|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 3899999999999998866 469999999985 5777664
No 327
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.86 E-value=0.0011 Score=73.13 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (658)
+||++|||+|++|..||.. ..|.+|+|+|+. ..||.|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeee
Confidence 5899999999999998654 479999999984 6788775
No 328
>PRK10262 thioredoxin reductase; Provisional
Probab=96.83 E-value=0.0084 Score=62.94 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCC------cEEEcCEEEECCChh
Q 006176 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDG------REFYAKTIISNATRW 442 (658)
Q Consensus 394 ~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G------~~i~ad~VV~a~g~~ 442 (658)
+.+++.|+++++++.|++|..+++++.+|++.++ +++.+|.||+++|..
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 4456778999999999999866656666776542 368999999999853
No 329
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.028 Score=58.45 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=71.4
Q ss_pred cccccHHHHHHHhcCCHHHHHHHhhhhhhhccCCCCCchHHH---HH--HHHhHhhcC--CccccCCChHHHHHHHHHHH
Q 006176 324 YLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMIN---AS--MVLCDRHFG--GINYPVGGVGGIAKSLAKGL 396 (658)
Q Consensus 324 ~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~---~~--~~~~~~~~~--g~~~p~gG~~~l~~~L~~~l 396 (658)
+..+++.+++..-.-.+.++.++-...... ...+..... +. +.......+ -+.+|.-|.+.|.+++-+.+
T Consensus 220 ~~e~~F~EyL~~~rltp~lqs~vl~aIaM~---~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlc 296 (547)
T KOG4405|consen 220 FRERPFSEYLKTMRLTPKLQSIVLHAIAML---SESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLC 296 (547)
T ss_pred hhcCcHHHHHHhcCCChhhHHHHHHHHHhc---CcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHH
Confidence 344566777776666677765543221111 112122211 11 111222222 24688999999999999999
Q ss_pred HHcCcEEEeCceeeEEEEeCCEE--EEEEECCCcEEEcCEEEECCC
Q 006176 397 ADKGSEILYKANVTKVILEQGKA--VGVRLSDGREFYAKTIISNAT 440 (658)
Q Consensus 397 ~~~G~~I~~~~~V~~I~~~~~~v--~gV~~~~G~~i~ad~VV~a~g 440 (658)
.-.|+-.-++.+|+.|..+++.. +.+....|+.+.++.+|++-.
T Consensus 297 AVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~ 342 (547)
T KOG4405|consen 297 AVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPS 342 (547)
T ss_pred HHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCc
Confidence 98999999999999999887643 222235677889998887544
No 330
>PLN02546 glutathione reductase
Probab=96.81 E-value=0.013 Score=65.93 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 35899999999999999999999999999998764
No 331
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.75 E-value=0.0081 Score=67.40 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=35.6
Q ss_pred cCcEEEeCceeeEEEEeCCEEEEEEECC---C--cEEEcCEEEECCChh
Q 006176 399 KGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRW 442 (658)
Q Consensus 399 ~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VV~a~g~~ 442 (658)
+|++|++++.|++|..+++++.+|++.+ | +++.+|.||+++|..
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 5899999999999987767777787654 2 368999999999853
No 332
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.72 E-value=0.016 Score=64.39 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999998753
No 333
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0024 Score=65.67 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=37.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCccee
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (658)
..+.|.|||+||||+.+|+.|.++ +.+|.|+|+.+.+.|..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 345899999999999999988884 689999999999999887
No 334
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.59 E-value=0.019 Score=61.25 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCcEEEeCceeeEEEEeC-CEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 390 KSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 390 ~~L~~~l~~~G~~I~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
+.+.+.++++|+++++++.+.++.... |+++.|.+.||.++.||.||+.+|...
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 335566789999999999999998654 789999999999999999999999654
No 335
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.48 E-value=0.00083 Score=63.32 Aligned_cols=41 Identities=34% Similarity=0.615 Sum_probs=35.8
Q ss_pred CccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCccee
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (658)
..||+|||+|-+||++||+.+++ ..+|.|+|..-.+||-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 46899999999999999999965 588999999998888543
No 336
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.46 E-value=0.03 Score=62.02 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+++|||+|..|+-.|..|++.|.+|+++|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3589999999999999999999999999999865
No 337
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.41 E-value=0.036 Score=61.05 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998753
No 338
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0057 Score=61.89 Aligned_cols=54 Identities=41% Similarity=0.604 Sum_probs=41.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC-CCCCcceeeEeeCCeEEccc
Q 006176 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPGGSSGYYERDGYTFDVG 209 (658)
Q Consensus 154 ~~~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~-~~~gg~~~t~~~~g~~~d~G 209 (658)
....||.||||||-+||+||-+.+..|.+|.++|-- +.+-| .+|...|--.++|
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~G--tsWGlGGTCvNVG 70 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQG--TSWGLGGTCVNVG 70 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCC--CccccCceeeecc
Confidence 345799999999999999999999999999999973 23323 3455666555655
No 339
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.17 E-value=0.046 Score=62.70 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4799999999999999999999999999998754
No 340
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.14 E-value=0.0062 Score=65.98 Aligned_cols=44 Identities=5% Similarity=0.098 Sum_probs=35.4
Q ss_pred HHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhH
Q 006176 397 ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (658)
Q Consensus 397 ~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~ 443 (658)
.+.|+++++++.|+.|..++.. |.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence 4568899999999999876643 5567888899999999999653
No 341
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.0097 Score=60.17 Aligned_cols=37 Identities=35% Similarity=0.471 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCc
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (658)
..|.|||||++|.-|||.++++|++|.++|-++.-+-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T 40 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT 40 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence 4589999999999999999999999999998866543
No 342
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.04 E-value=0.007 Score=66.49 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (658)
.+|+|||||++|+.||..|++. +++|+|+|+.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 4799999999999999999986 5789999998653
No 343
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.94 E-value=0.045 Score=61.50 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=35.1
Q ss_pred cCcEEEeCceeeEEEEeCCEEEEEEECC---Cc--EEEcCEEEECCChh
Q 006176 399 KGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRW 442 (658)
Q Consensus 399 ~G~~I~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VV~a~g~~ 442 (658)
.|+++++++.|++|..+++++++|++.+ |+ ++.+|.|++++|..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 4889999999999987767777777643 33 58899999998853
No 344
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.86 E-value=0.022 Score=63.82 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=43.9
Q ss_pred HHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 392 L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
|...+++.|.++++++.+++|.- .+++.+|+++||..+.||.||+|+|..
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEecccc
Confidence 56677888999999999998876 667889999999999999999999944
No 345
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.83 E-value=0.067 Score=59.14 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (658)
..+|+|||+|..|+-+|..|++.|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999999998 79999874
No 346
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.78 E-value=0.082 Score=54.49 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 358999999999999999999999999999874
No 347
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.41 E-value=0.027 Score=57.48 Aligned_cols=60 Identities=23% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCh-HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 383 GGV-GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 383 gG~-~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
.|+ ..+.+.+.+.++..|++++.++.++++...+.....+....|.....|.+++|+|..
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence 344 456677889999999999999999999987665444556677655599999999965
No 348
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.88 E-value=0.03 Score=52.10 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||||..|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 349
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.81 E-value=0.61 Score=45.42 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|||||..|..-+..|.+.|.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4589999999999999999999999999998754
No 350
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.77 E-value=0.035 Score=52.93 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||+|..|...|..++++|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999864
No 351
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.70 E-value=0.12 Score=58.81 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEE---CCCc--EEEcCEEEECCChhH
Q 006176 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (658)
Q Consensus 386 ~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VV~a~g~~~ 443 (658)
..|.+.|.+.+++.|++|+.++.|++|..++|+++||.. .+|+ .+.|+.||+|+|...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 478899999999999999999999999998899999875 3564 478999999999765
No 352
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=94.67 E-value=0.12 Score=54.92 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=66.3
Q ss_pred cccHHHHHHHhcCCHHH-HHHHhhhhhhhccCCCCCchHHHHHHHHhHhhcCCccccCCChHHHHHHHHHHHHHcCcEEE
Q 006176 326 PQNAGNIARKYIKDPQL-LSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEIL 404 (658)
Q Consensus 326 ~~s~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~~~G~~I~ 404 (658)
..+..+++.+..-++.+ .+++.+......+-+ ...+++.+...+.. ..+|.+-++||..++++.|.+. .|+++
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~-a~~gl~sV~GGN~qI~~~ll~~---S~A~v- 142 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG-ATGGLWSVEGGNWQIFEGLLEA---SGANV- 142 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee-ccCCceEecCCHHHHHHHHHHH---ccCcE-
Confidence 34455666555434433 355554443333222 34454444433332 3468889999999999999764 57899
Q ss_pred eCceeeEE-EEeCC-E-EEEEEECC--C-cEEEcCEEEECCChh
Q 006176 405 YKANVTKV-ILEQG-K-AVGVRLSD--G-REFYAKTIISNATRW 442 (658)
Q Consensus 405 ~~~~V~~I-~~~~~-~-v~gV~~~~--G-~~i~ad~VV~a~g~~ 442 (658)
++++|++| ...++ . ...|...+ + ..-.+|.||+|+|..
T Consensus 143 l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 143 LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 89999999 33332 2 23354433 2 224579999999864
No 353
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.61 E-value=0.17 Score=53.15 Aligned_cols=36 Identities=31% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (658)
..+|+|.||-||+-|+.|+.|...+ .++..+||.+.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 4689999999999999999999875 78999999753
No 354
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.23 E-value=0.34 Score=58.80 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHcCcEEEeCceeeEEEEeCCEEEEEEEC----CCcEEEcCEEEECCChh
Q 006176 396 LADKGSEILYKANVTKVILEQGKAVGVRLS----DGREFYAKTIISNATRW 442 (658)
Q Consensus 396 l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~----~G~~i~ad~VV~a~g~~ 442 (658)
++++|++|++++.|++|..+ +++.+|++. +++++.+|.|+++.|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g~-~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG-KRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC-CcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 46778999999999999643 455566654 45679999999999954
No 355
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.05 E-value=0.055 Score=51.77 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=26.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
++|.|||.|..||..|..||++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 368999999999999999999999999999865
No 356
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.86 E-value=0.068 Score=55.97 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=30.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc----CCeEEEEecCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYV 190 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~----g~~v~~~e~~~ 190 (658)
...+||+|||||+.|++.|..|... -.+|.++|...
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 4479999999999999999999864 46899999874
No 357
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.71 E-value=0.071 Score=59.00 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
+|+|||.|.+|+++|..|+++|++|+++|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999987654
No 358
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.085 Score=58.75 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999765
No 359
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.65 E-value=0.37 Score=50.91 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=27.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (658)
....+|+|||||.++.-.+..|.+.+. +|+++=|+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 456899999999999999999999874 688887754
No 360
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.52 E-value=2.2 Score=41.34 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3468999999999999999999999999999864
No 361
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.13 E-value=0.14 Score=47.08 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
|+|+|+|-.|+..|++|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999864
No 362
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.91 E-value=0.11 Score=54.09 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
+|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998753
No 363
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.16 Score=52.36 Aligned_cols=34 Identities=32% Similarity=0.257 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998753
No 364
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.39 E-value=0.2 Score=52.20 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 365
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.15 E-value=0.17 Score=50.02 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
++++|||+|..|.+.|..|.+.|+.|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 3689999999999999999999999999999754
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.02 E-value=0.19 Score=51.89 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 367
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.98 E-value=0.24 Score=51.82 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|.|||+|..|...|..|+++|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4579999999999999999999999999999864
No 368
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.97 E-value=0.21 Score=54.67 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
...++|||||..|+-.|..+++.|.+|+|+|+.+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 356999999999999999999999999999998765
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.94 E-value=0.2 Score=55.20 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999864
No 370
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.72 E-value=0.19 Score=51.83 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999864
No 371
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.40 E-value=0.33 Score=43.83 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCe-EEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~ 189 (658)
...+++|||+|-+|..+++.|+..|.+ |+|+.|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 357899999999999999999999987 9999986
No 372
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.37 E-value=0.27 Score=50.83 Aligned_cols=33 Identities=30% Similarity=0.226 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 373
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.10 E-value=0.34 Score=45.52 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=29.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
...|+|+|+|.+|..||..|...|.+|+++|..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 478999999999999999999999999999975
No 374
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.96 E-value=0.3 Score=54.04 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 368999999999999999999999999999998754
No 375
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=90.74 E-value=0.23 Score=49.89 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChhHHHhhccCCC
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~~~~~~Ll~~~ 452 (658)
.+...|.+.+.++|+++.. .+|+++.. +.+ -.+|.||.|+|.++ ..|.+.+
T Consensus 152 ~ylpyl~k~l~e~Gvef~~-r~v~~l~E---------~~~---~~~DVivNCtGL~a--~~L~gDd 202 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQ-RRVESLEE---------VAR---PEYDVIVNCTGLGA--GKLAGDD 202 (342)
T ss_pred hhhHHHHHHHHhcCcEEEE-eeeccHHH---------hcc---CCCcEEEECCcccc--ccccCCc
Confidence 5666788999999999874 45666531 111 35899999999887 5666653
No 376
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.62 E-value=0.3 Score=50.46 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.54 E-value=0.33 Score=50.46 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+|+|||+|..|...|++|++.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999995
No 378
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.28 E-value=0.28 Score=51.35 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
-|.+.-.+.+++.|++|+-|+.|.++....+.+. +.++||.++..|+||+|+|-.
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~-lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV-LKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhccceE-EEecCCCeeeeeeEEEEecCC
Confidence 3456667889999999999999999988777765 889999999999999999944
No 379
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.15 E-value=0.43 Score=46.28 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999999 599999863
No 380
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.08 E-value=0.35 Score=46.66 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4789999999999999999999999999998865
No 381
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.02 E-value=0.38 Score=49.87 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999984
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.98 E-value=0.37 Score=50.70 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+++.|||+|..||+.|..|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 368999999999999999999999999999864
No 383
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.96 E-value=0.38 Score=52.33 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5699999999999999999999999999998654
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.89 E-value=0.27 Score=42.08 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
...+|+|||+|..|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3578999999999999999999999999999987
No 385
>PRK04148 hypothetical protein; Provisional
Probab=89.75 E-value=0.38 Score=43.07 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998754
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.69 E-value=0.37 Score=49.53 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 387
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.66 E-value=0.55 Score=44.09 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCccEEEECCCh-hHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGI-GGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~-~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..++++|||+|- .|..+|.+|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 468899999996 6999999999999999999975
No 388
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.63 E-value=0.4 Score=49.77 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~ 188 (658)
+|.|||+|..|...|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999997
No 389
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.27 E-value=0.47 Score=50.19 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+|.|||+|..|...|..|+++|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999985
No 390
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.27 E-value=0.61 Score=43.32 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~ 188 (658)
...+|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 357899999999999999999999999999953
No 391
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.01 E-value=0.55 Score=48.58 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 392
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.00 E-value=0.55 Score=50.21 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|||+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999853
No 393
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.93 E-value=0.6 Score=48.53 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
.+|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 394
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.89 E-value=0.61 Score=49.05 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999964
No 395
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.88 E-value=0.64 Score=43.43 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||-|..|...|..|+++|++|.++|+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 469999999999999999999999999999864
No 396
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=88.80 E-value=1.1 Score=47.83 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCcEEEcCEEEECCChh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
.+.+.+.+.++++|+++++++.|++|. ++ .|.+.+|+++.+|.||+|+|..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCCC
Confidence 566778888999999999999999984 33 3667889899999999999943
No 397
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=88.56 E-value=0.55 Score=47.71 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEE
Q 006176 383 GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAV 420 (658)
Q Consensus 383 gG~~~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~ 420 (658)
-|....+++|.+.+++++++|.+..+..+|..++..++
T Consensus 233 FgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~Av 270 (446)
T KOG3851|consen 233 FGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAV 270 (446)
T ss_pred ecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhH
Confidence 46679999999999999999999999988887776543
No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.49 E-value=0.51 Score=51.38 Aligned_cols=33 Identities=33% Similarity=0.246 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998654
No 399
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.46 E-value=0.64 Score=48.47 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999754
No 400
>PLN02507 glutathione reductase
Probab=88.41 E-value=0.58 Score=52.30 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
.+|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 57999999999999999999999999999987643
No 401
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.39 E-value=0.54 Score=47.69 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..-+|+|||+|.+|.-+|-.+...|.+|+|+|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3568999999999999999999999999999987
No 402
>PRK12831 putative oxidoreductase; Provisional
Probab=88.35 E-value=0.63 Score=51.48 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...+|+|||+|..|+-+|..|.+.|.+|+|+++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35689999999999999999999999999999754
No 403
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.31 E-value=0.65 Score=51.85 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..|.|||+|..|...|..|+++|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998654
No 404
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.19 E-value=0.74 Score=47.94 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|.|||+|..|.+.|..|+++|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3569999999999999999999999999999864
No 405
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.18 E-value=0.64 Score=49.47 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcC-CeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~ 189 (658)
.+|+|||+|-.|.++|+.|++.| .+|+|.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999997
No 406
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.10 E-value=0.67 Score=48.25 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g--~~v~~~e~~~ 190 (658)
+|.|||+|..|.++|+.|+++| .+|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 5799999864
No 407
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.09 E-value=0.62 Score=52.83 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..+|+|||||..|+-.|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998764
No 408
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.99 E-value=0.56 Score=52.23 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998643
No 409
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.83 E-value=0.72 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 369999999999999999999999999999864
No 410
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=87.48 E-value=0.72 Score=49.01 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
...|+|||+|..|+-+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35799999999999999999999987 99998753
No 411
>PRK02106 choline dehydrogenase; Validated
Probab=87.36 E-value=0.64 Score=52.83 Aligned_cols=36 Identities=39% Similarity=0.509 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHHH-cCCeEEEEecCCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAV-KGARVLVLEKYVI 191 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~-~g~~v~~~e~~~~ 191 (658)
..+|+||||+|.+|+.+|.+|++ .|++|+|||++..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 46999999999999999999999 8999999999853
No 412
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.08 E-value=0.8 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||+|-.|.+.|..|+++|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999853
No 413
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.91 E-value=0.72 Score=51.46 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||+|..|...|..|+++|++|+|+|+..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999853
No 414
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.83 E-value=0.82 Score=50.92 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 415
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.77 E-value=0.79 Score=49.77 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
..+|+|+|-|.+|+++|..|.+.|.+|++.|.....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999976654
No 416
>PTZ00052 thioredoxin reductase; Provisional
Probab=86.66 E-value=0.82 Score=51.12 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999874
No 417
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.66 E-value=0.84 Score=50.61 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...+|+|+|+|++||.++..+...|.+|+++|.+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999764
No 418
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.50 E-value=0.97 Score=48.77 Aligned_cols=35 Identities=37% Similarity=0.309 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
....|+|+|.|+.|+.+|..|...|.+|+++|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35689999999999999999999999999999864
No 419
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.44 E-value=0.78 Score=47.05 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999854
No 420
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.39 E-value=0.99 Score=46.37 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4679999999999999999999997 699999863
No 421
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.09 E-value=1.4 Score=42.77 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
....++|+|.|-.|..+|..|.+.|++|++.|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999875
No 422
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.07 E-value=1.1 Score=38.80 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
|+|+|.|..|...|..|.+.+.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998889999999753
No 423
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.90 E-value=1.1 Score=47.36 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999998 799999865
No 424
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.87 E-value=0.8 Score=53.49 Aligned_cols=34 Identities=35% Similarity=0.318 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..|.|||+|..|...|..++++|++|+++|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 425
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.73 E-value=1.2 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (658)
+.+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3579999999999999999999998 5999998643
No 426
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.65 E-value=1.1 Score=49.37 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...++|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3569999999999999999999999999999754
No 427
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.64 E-value=1.2 Score=46.06 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...+++|||.|.+|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999874
No 428
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.50 E-value=1 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|+|.|.+|+++|..|.+.|++|++.|+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999764
No 429
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.44 E-value=1.2 Score=46.99 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4679999999999999999999998 799999864
No 430
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.41 E-value=1.3 Score=48.64 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (658)
...++|+|.|.+|+++|..|+++|++|++.|.....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 357999999999999999999999999999976543
No 431
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.35 E-value=0.91 Score=48.86 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
+|.|||.|..|+..|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988885 999999998654
No 432
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=85.22 E-value=43 Score=36.01 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCceeeEEEEeCCEEEEEEECCCc--EEEcCEEEECCChh
Q 006176 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRW 442 (658)
Q Consensus 387 ~l~~~L~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VV~a~g~~ 442 (658)
++.+-..+.+.+.|+++.+++.|+++.-+ .+ .+.+.+|+ ++.+-.+|+++|..
T Consensus 274 rl~~yae~~f~~~~I~~~~~t~Vk~V~~~--~I-~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 274 RLVEYAENQFVRDGIDLDTGTMVKKVTEK--TI-HAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHHHHHHhhhccceeecccEEEeecCc--EE-EEEcCCCceeeecceEEEecCCCC
Confidence 56666677788889999999999988532 23 35556664 67888999999843
No 433
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=0.82 Score=47.00 Aligned_cols=34 Identities=35% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..+||+|||||-+|.-||..||--=..|+++|=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 4689999999999999999998776789999953
No 434
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.07 E-value=1 Score=46.49 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..|.|||+|..|-..|+.++..|++|+++|.+.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 569999999999999999999889999999873
No 435
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.94 E-value=0.94 Score=52.81 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
-..|.|||+|..|...|..++.+|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998753
No 436
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.81 E-value=1.1 Score=49.36 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~ 191 (658)
++|.|||.|..|+..|..|+++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 488999997543
No 437
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=84.53 E-value=1.3 Score=39.90 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
++|+|+|..+...|..++..|++|+|+|-+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998743
No 438
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.48 E-value=1.2 Score=49.32 Aligned_cols=34 Identities=15% Similarity=-0.030 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|+|.|.+|.++|..|.+.|.+|++.|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 439
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=84.46 E-value=0.72 Score=45.67 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=27.6
Q ss_pred EEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 006176 160 AIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (658)
.+|||||+||.+||-.|+.. ..+|+++-+.+.+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 68999999999999999974 4578888876654
No 440
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.14 E-value=1.5 Score=41.49 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
+|+|||+|-.|...|..|++.|+. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999985 99999864
No 441
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.02 E-value=1.3 Score=49.26 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
...|+|+|.|.+|++++..|.+.|.+|++.|..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999964
No 442
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.95 E-value=1.1 Score=46.16 Aligned_cols=32 Identities=28% Similarity=0.202 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999864
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.90 E-value=1.6 Score=42.31 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
+.+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4679999999999999999999997 699999863
No 444
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.89 E-value=1.9 Score=45.07 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=31.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 006176 155 ADDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (658)
Q Consensus 155 ~~~~~~~iiG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (658)
+...+|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 345689999999999999999999987 799999854
No 445
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.87 E-value=2.1 Score=35.08 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.0
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CCeEEEEec
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVK-GARVLVLEK 188 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~-g~~v~~~e~ 188 (658)
..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46799999999999999999998 678999998
No 446
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.84 E-value=1.5 Score=43.12 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.8
Q ss_pred cEEEEC-CChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.||| +|..|.+.|..|+++|++|++++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998753
No 447
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=83.84 E-value=1.7 Score=44.12 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
...|+|||.|-.|..+|..|++.|+ +++|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4679999999999999999999995 699999764
No 448
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.77 E-value=1.6 Score=45.34 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
.+|.|||+|..|...|+.|+..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 579999999999999999999876 899999854
No 449
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.70 E-value=1.6 Score=44.93 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
....++|||.|..|...|..|+..|.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999864
No 450
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=83.68 E-value=1.2 Score=43.05 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
....|.|||+|..|...|-..+..|+.|.++|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346799999999999999999999999999998753
No 451
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.61 E-value=2.6 Score=46.78 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHHHHHcCcEEEeCceeeEEEEeCCEEEEEEEC-----CC---------cEEEcCEEEECCC
Q 006176 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLS-----DG---------REFYAKTIISNAT 440 (658)
Q Consensus 393 ~~~l~~~G~~I~~~~~V~~I~~~~~~v~gV~~~-----~G---------~~i~ad~VV~a~g 440 (658)
.+.+.+.|+++++++.+++|..+++++++|++. +| +++.+|.||+|+|
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 456778899999999999998777888777642 22 3688999999888
No 452
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.60 E-value=1.3 Score=48.88 Aligned_cols=35 Identities=20% Similarity=0.009 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHH-HHHHHHHcCCeEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLV-AATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~-~a~~l~~~g~~v~~~e~~~~ 191 (658)
..+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 457999999999999 69999999999999997643
No 453
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.59 E-value=2 Score=44.97 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (658)
..+|+|||+|..|.+.|+.|+..|+ +|+|+|....
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999998654
No 454
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.47 E-value=1.5 Score=43.31 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC---eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA---RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~---~v~~~e~~~ 190 (658)
..+++|+|+|-+|..+|..|.+.|. +|.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4579999999999999999999997 499999873
No 455
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.31 E-value=1.8 Score=41.54 Aligned_cols=33 Identities=39% Similarity=0.514 Sum_probs=29.8
Q ss_pred CccEEEECC-ChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~-g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..+++|+|+ |..|..+|..|++.|.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999997 999999999999999999999875
No 456
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.24 E-value=1.2 Score=52.25 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
..|.|||+|..|...|+.++.+|++|+++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 5799999999999999999999999999998753
No 457
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=83.13 E-value=1.5 Score=47.83 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHH--------------cCCeEEEEecCCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAV--------------KGARVLVLEKYVIP 192 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~--------------~g~~v~~~e~~~~~ 192 (658)
..++|||+|++|+-.|..|+. .+.+|+|+|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 479999999999999998875 37899999997654
No 458
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=83.11 E-value=1.7 Score=46.57 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.6
Q ss_pred CCCCCccEEEEC-CChhHHHHHHHHHHcCCeEEEEecC
Q 006176 153 RGADDYDAIVIG-SGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 153 ~~~~~~~~~iiG-~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..+....|.||| .|..|.+.|..|.++|++|+++++.
T Consensus 94 ~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 94 LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 334557899999 8999999999999999999999985
No 459
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=82.85 E-value=1.8 Score=44.65 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
...++|+|+|-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45799999999999999999999986 99999863
No 460
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.65 E-value=1.7 Score=45.13 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (658)
+|+|||+|-.|.++|+.|+..| .+++++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5999999999999999999999 57999998643
No 461
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.64 E-value=1.8 Score=43.28 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|.. ++|+|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 46799999999999999999999974 99999764
No 462
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.54 E-value=1.9 Score=42.21 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46799999999999999999999986 99999863
No 463
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.54 E-value=2 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
+|+|||.|-.|...|..|++.|+ +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 599999864
No 464
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.47 E-value=1.9 Score=43.92 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...++|+|+|-+|.+.|..|++.|.+|+|++|+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999998863
No 465
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.44 E-value=1.7 Score=48.31 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
.+|.|+|.|.+|+++|..|.+.|++|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 46999999999999999999999999999975
No 466
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=82.31 E-value=1.8 Score=44.23 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
+|.+||-|..|...|..|.++|+.|++++|+..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 589999999999999999999999999999754
No 467
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.28 E-value=1.9 Score=46.44 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 35689999999999999999999999999999765
No 468
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.20 E-value=1.6 Score=51.42 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
..+|+|||||..|+-+|..|.+.|.+ |+|+++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999987 99999764
No 469
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=82.05 E-value=2 Score=47.65 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 470
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.77 E-value=1.8 Score=47.76 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3579999999999999999995 9999999954
No 471
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=81.71 E-value=1.7 Score=45.00 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999864
No 472
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=81.68 E-value=1.6 Score=50.93 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHH-HcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~-~~g~~v~~~e~~~ 190 (658)
..|.|||+|..|...|..++ +.|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 57999999999999999988 5899999999875
No 473
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=81.68 E-value=1.5 Score=48.44 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
.+|.|||.|..|...|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999654
No 474
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.61 E-value=1.6 Score=45.40 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
++.|+|+|-.|...|++|+++|..|+++-|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 689999999999999999999988888887653
No 475
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.54 E-value=1.5 Score=51.11 Aligned_cols=34 Identities=24% Similarity=0.111 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHH-HcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~-~~g~~v~~~e~~~ 190 (658)
-..|.|||+|..|...|..++ +.|++|+++|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999998 8899999999864
No 476
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.48 E-value=2.2 Score=44.41 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (658)
.+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999985 899999864
No 477
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.27 E-value=2.2 Score=39.57 Aligned_cols=34 Identities=38% Similarity=0.290 Sum_probs=27.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+.++|+|=|..|..+|..|+..|.+|+|.|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4679999999999999999999999999999875
No 478
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.06 E-value=2.2 Score=42.81 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (658)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4689999999999999999999997 59999976
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.64 E-value=2.3 Score=46.05 Aligned_cols=35 Identities=34% Similarity=0.266 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
....|+|+|.|..|..+|..|...|.+|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 35689999999999999999999999999999865
No 480
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.56 E-value=2.6 Score=44.17 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (658)
+.+|+|||+|..|.+.|+.|+..| .+++|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 568999999999999999999999 5899999864
No 481
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=80.42 E-value=2 Score=44.51 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 160 AIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 160 ~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
|.|||+|..|...|+.|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999874
No 482
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.37 E-value=2.1 Score=46.69 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||-|.+|+++|..|.++|++|++.|+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999754
No 483
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=80.27 E-value=1.5 Score=47.12 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=42.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-------------CeEEEEecCCCCCcceeeEeeCCeEEccccccccCCcCCCchH
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG-------------ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLN 223 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g-------------~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~ 223 (658)
..+++|||||++|.-.|..|+..- .+|+|+|+.+++ +..+.. ....
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------------------Lp~~~~-~l~~ 213 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------------------LPMFPP-KLSK 213 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------------------ccCCCH-HHHH
Confidence 357999999999999999988632 378888887654 222211 1234
Q ss_pred HHHHHHHhcCCcee
Q 006176 224 LITQALAAVGCEME 237 (658)
Q Consensus 224 ~~~~ll~~lG~~~~ 237 (658)
...+.|+++|+++.
T Consensus 214 ~a~~~L~~~GV~v~ 227 (405)
T COG1252 214 YAERALEKLGVEVL 227 (405)
T ss_pred HHHHHHHHCCCEEE
Confidence 57778999998764
No 484
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.22 E-value=2.1 Score=47.87 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999754
No 485
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=80.08 E-value=2.6 Score=43.25 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+++|||+|-++.++++.|++.|. +|+|+.|+.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4679999999999999999999997 599998863
No 486
>PRK08328 hypothetical protein; Provisional
Probab=80.00 E-value=2.5 Score=42.02 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (658)
..+|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46799999999999999999999975 99998754
No 487
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.93 E-value=2.7 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (658)
..+++|+|+|-+|.++|..|++.| .+|+|+.|+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 467999999999999999999999 6899999864
No 488
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.71 E-value=3.1 Score=38.15 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (658)
..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 467999999999999999999986 7899998864
No 489
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=79.50 E-value=2.2 Score=40.85 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=39.6
Q ss_pred HHHHHHHHcCcEEEeCceeeEEEEeCCEE-------EEEEECCCcEEEcCEEEECCChh
Q 006176 391 SLAKGLADKGSEILYKANVTKVILEQGKA-------VGVRLSDGREFYAKTIISNATRW 442 (658)
Q Consensus 391 ~L~~~l~~~G~~I~~~~~V~~I~~~~~~v-------~gV~~~~G~~i~ad~VV~a~g~~ 442 (658)
.+.+.+...+++++++++|.+|....+.+ ..+...++.++.+|+||+|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 46666677899999999999999887742 11233456689999999999954
No 490
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.19 E-value=2.3 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 348999999999999999999999999999754
No 491
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=79.09 E-value=3.1 Score=41.70 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (658)
....++|+|+|..+...|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 357899999999999999999999999999996643
No 492
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=79.05 E-value=2.3 Score=43.90 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 158 ~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 369999999999999999999999999999864
No 493
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=79.03 E-value=3 Score=42.82 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
...++|+|+|-++.++|+.|++.|. +++|+.|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4679999999999999999999997 599998853
No 494
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=78.94 E-value=2.6 Score=50.82 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
...+|+|||||..|+-+|..+.+.|.+|+++.+..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 35689999999999999999999999999998764
No 495
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.85 E-value=2.8 Score=45.95 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
..++.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3579999999999999999999999999999754
No 496
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=78.79 E-value=2.7 Score=43.53 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 006176 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (658)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999865
No 497
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.67 E-value=2.9 Score=41.47 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (658)
..+|+|||.|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4679999999999999999999998 599999763
No 498
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=78.37 E-value=4 Score=37.09 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=28.8
Q ss_pred cEEEECC-ChhHHHHHHHHHHcCC--eEEEEecCC
Q 006176 159 DAIVIGS-GIGGLVAATQLAVKGA--RVLVLEKYV 190 (658)
Q Consensus 159 ~~~iiG~-g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (658)
+|.|||+ |..|.+.|+.|...+. ++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999999874 699999874
No 499
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.34 E-value=2.8 Score=47.14 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 006176 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (658)
Q Consensus 157 ~~~~~iiG~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (658)
...++|+|+|-+|.++|+.|++.|.+|+++.|.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999875
No 500
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.33 E-value=3.2 Score=43.21 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 006176 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (658)
Q Consensus 156 ~~~~~~iiG~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (658)
.+.+|.|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35689999999999999999999875 599999754
Done!