Query 006179
Match_columns 658
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 19:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 97.2 0.048 1E-06 56.9 20.4 114 43-184 17-147 (343)
2 PF00038 Filament: Intermediat 97.1 0.34 7.3E-06 48.3 30.6 117 12-138 13-130 (312)
3 PHA02562 46 endonuclease subun 96.5 0.47 1E-05 50.5 21.3 75 15-89 172-247 (562)
4 KOG0161 Myosin class II heavy 96.2 5.9 0.00013 50.5 32.6 382 58-451 1297-1734(1930)
5 COG1196 Smc Chromosome segrega 96.1 4.8 0.0001 48.2 31.8 49 259-307 969-1017(1163)
6 PRK02224 chromosome segregatio 95.8 4.9 0.00011 45.8 31.5 26 233-258 483-508 (880)
7 TIGR02168 SMC_prok_B chromosom 95.7 4.8 0.0001 45.6 31.7 19 233-251 966-984 (1179)
8 TIGR02169 SMC_prok_A chromosom 95.6 5.8 0.00013 45.4 34.1 20 234-253 953-972 (1164)
9 TIGR00606 rad50 rad50. This fa 94.8 13 0.00029 45.1 26.4 45 54-98 223-267 (1311)
10 TIGR02168 SMC_prok_B chromosom 94.6 10 0.00023 43.1 34.0 25 13-37 673-697 (1179)
11 PF10174 Cast: RIM-binding pro 94.4 13 0.00029 43.7 28.3 116 15-139 1-135 (775)
12 PRK02224 chromosome segregatio 93.8 15 0.00033 41.9 31.9 25 232-256 475-499 (880)
13 PRK03918 chromosome segregatio 93.6 16 0.00034 41.5 29.6 62 15-76 410-480 (880)
14 PF05667 DUF812: Protein of un 93.3 17 0.00037 41.5 22.1 88 239-329 447-534 (594)
15 TIGR02169 SMC_prok_A chromosom 93.0 21 0.00045 41.1 35.8 33 56-88 231-263 (1164)
16 PRK09039 hypothetical protein; 93.0 14 0.0003 39.1 20.8 60 14-83 43-102 (343)
17 COG1196 Smc Chromosome segrega 91.9 35 0.00076 41.2 38.1 41 402-443 974-1015(1163)
18 PRK04863 mukB cell division pr 91.9 43 0.00094 42.2 27.8 45 51-98 282-326 (1486)
19 PRK10884 SH3 domain-containing 91.8 2.5 5.4E-05 42.2 11.7 71 12-98 88-158 (206)
20 PF00038 Filament: Intermediat 91.7 16 0.00034 36.7 29.4 196 111-319 61-278 (312)
21 KOG0161 Myosin class II heavy 91.6 53 0.0011 42.6 38.1 180 11-190 1316-1514(1930)
22 PF15070 GOLGA2L5: Putative go 91.3 14 0.00029 42.5 18.2 170 11-198 44-216 (617)
23 PF08614 ATG16: Autophagy prot 91.1 2.4 5.1E-05 40.9 10.5 78 44-122 21-120 (194)
24 PF09726 Macoilin: Transmembra 90.5 40 0.00088 39.3 25.9 89 152-273 544-632 (697)
25 KOG0612 Rho-associated, coiled 90.4 56 0.0012 40.8 25.6 92 58-149 468-560 (1317)
26 PF12718 Tropomyosin_1: Tropom 90.1 17 0.00037 34.3 16.2 123 132-281 7-129 (143)
27 PRK03918 chromosome segregatio 90.0 40 0.00087 38.4 28.9 49 135-183 234-282 (880)
28 PF10174 Cast: RIM-binding pro 90.0 48 0.001 39.3 30.7 174 11-184 136-339 (775)
29 PRK11637 AmiB activator; Provi 89.9 30 0.00066 36.9 24.6 35 56-90 90-124 (428)
30 TIGR03185 DNA_S_dndD DNA sulfu 89.9 39 0.00085 38.1 21.0 47 13-62 265-311 (650)
31 PF00261 Tropomyosin: Tropomyo 89.3 25 0.00053 35.0 16.1 51 142-192 179-229 (237)
32 PF05557 MAD: Mitotic checkpoi 89.3 1.6 3.5E-05 49.3 9.0 124 151-290 501-636 (722)
33 PRK11637 AmiB activator; Provi 89.0 35 0.00076 36.4 22.9 35 52-86 37-71 (428)
34 PF12325 TMF_TATA_bd: TATA ele 88.9 9.6 0.00021 35.5 12.2 100 43-168 12-111 (120)
35 KOG0804 Cytoplasmic Zn-finger 88.2 12 0.00025 42.2 14.2 43 142-184 378-420 (493)
36 TIGR00606 rad50 rad50. This fa 87.6 79 0.0017 38.8 34.8 106 147-257 495-602 (1311)
37 PF09755 DUF2046: Uncharacteri 87.3 47 0.001 35.8 21.1 36 230-265 227-266 (310)
38 KOG2991 Splicing regulator [RN 87.2 41 0.00089 36.1 16.8 194 13-283 66-266 (330)
39 PF10168 Nup88: Nuclear pore c 87.0 9.7 0.00021 44.2 13.3 28 294-321 683-710 (717)
40 PHA02562 46 endonuclease subun 86.8 49 0.0011 35.6 24.4 24 171-195 259-282 (562)
41 KOG0995 Centromere-associated 85.6 78 0.0017 36.7 23.7 175 50-286 216-390 (581)
42 PF04912 Dynamitin: Dynamitin 85.5 42 0.00092 35.7 16.2 136 10-162 87-225 (388)
43 KOG0999 Microtubule-associated 82.9 1.1E+02 0.0023 36.1 20.6 211 57-293 10-241 (772)
44 PF07888 CALCOCO1: Calcium bin 82.7 99 0.0021 35.7 26.8 60 107-166 300-359 (546)
45 COG0419 SbcC ATPase involved i 79.1 1.4E+02 0.0031 35.2 30.8 38 60-97 272-309 (908)
46 PF04849 HAP1_N: HAP1 N-termin 78.6 94 0.002 33.5 15.6 79 12-98 162-246 (306)
47 PF01920 Prefoldin_2: Prefoldi 78.2 28 0.00061 29.4 9.7 84 144-256 3-86 (106)
48 PF10186 Atg14: UV radiation r 77.8 73 0.0016 31.2 17.6 71 13-85 23-93 (302)
49 PF09728 Taxilin: Myosin-like 77.3 1E+02 0.0022 32.6 16.1 100 60-179 41-140 (309)
50 PF15070 GOLGA2L5: Putative go 76.8 1.5E+02 0.0033 34.3 32.1 68 15-98 2-69 (617)
51 PF08232 Striatin: Striatin fa 75.6 6.3 0.00014 36.8 5.5 57 113-183 6-62 (134)
52 KOG4643 Uncharacterized coiled 75.1 2.2E+02 0.0049 35.4 21.9 226 60-318 203-455 (1195)
53 PRK10884 SH3 domain-containing 75.1 44 0.00096 33.5 11.5 26 50-75 88-113 (206)
54 PF14662 CCDC155: Coiled-coil 74.6 14 0.00031 37.3 8.0 71 12-82 97-178 (193)
55 KOG0979 Structural maintenance 73.6 1E+02 0.0023 37.9 15.7 166 12-208 197-366 (1072)
56 PF09738 DUF2051: Double stran 72.4 1.4E+02 0.003 31.9 14.9 146 13-191 14-171 (302)
57 cd00632 Prefoldin_beta Prefold 72.0 70 0.0015 28.2 11.3 56 63-130 7-62 (105)
58 PF02050 FliJ: Flagellar FliJ 71.8 56 0.0012 27.0 12.0 80 14-98 16-95 (123)
59 PF13514 AAA_27: AAA domain 71.6 2.4E+02 0.0052 34.2 20.2 28 12-39 745-772 (1111)
60 PF06248 Zw10: Centromere/kine 71.3 1.8E+02 0.0039 32.6 18.1 52 12-64 9-62 (593)
61 PF12718 Tropomyosin_1: Tropom 71.1 96 0.0021 29.4 14.3 37 53-89 26-62 (143)
62 PF01486 K-box: K-box region; 71.0 18 0.00038 31.6 6.9 73 15-87 10-100 (100)
63 PRK04778 septation ring format 70.8 1.9E+02 0.004 32.6 25.5 80 59-138 253-337 (569)
64 PF08172 CASP_C: CASP C termin 70.4 45 0.00099 34.3 10.6 41 144-184 84-124 (248)
65 PF12240 Angiomotin_C: Angiomo 70.3 95 0.0021 32.0 12.6 46 119-164 100-154 (205)
66 PRK11281 hypothetical protein; 70.0 2.9E+02 0.0062 34.4 20.3 162 14-185 125-331 (1113)
67 TIGR02680 conserved hypothetic 69.7 2.9E+02 0.0062 34.7 18.7 157 1-165 214-387 (1353)
68 PF05911 DUF869: Plant protein 69.0 1.6E+02 0.0034 35.3 15.7 59 120-181 111-169 (769)
69 KOG0243 Kinesin-like protein [ 68.9 3E+02 0.0065 34.3 30.8 66 12-87 443-508 (1041)
70 TIGR01843 type_I_hlyD type I s 68.0 1.5E+02 0.0032 30.4 22.4 37 50-86 125-161 (423)
71 KOG0612 Rho-associated, coiled 67.5 3.5E+02 0.0075 34.4 28.3 286 14-320 469-803 (1317)
72 KOG0250 DNA repair protein RAD 66.7 3.4E+02 0.0073 34.0 30.1 147 101-276 306-452 (1074)
73 PF10458 Val_tRNA-synt_C: Valy 66.7 47 0.001 27.4 8.1 58 15-72 2-63 (66)
74 PF10224 DUF2205: Predicted co 66.6 31 0.00068 30.5 7.4 55 409-463 13-67 (80)
75 PF08172 CASP_C: CASP C termin 66.2 93 0.002 32.2 11.8 116 149-277 2-124 (248)
76 COG1579 Zn-ribbon protein, pos 65.1 1.8E+02 0.0039 30.3 15.9 178 146-374 38-226 (239)
77 PF01920 Prefoldin_2: Prefoldi 64.6 34 0.00075 28.9 7.2 74 12-85 14-99 (106)
78 COG2825 HlpA Outer membrane pr 64.4 1.5E+02 0.0032 29.0 13.2 47 146-201 97-143 (170)
79 KOG0933 Structural maintenance 63.3 3.9E+02 0.0084 33.5 26.9 58 12-76 669-729 (1174)
80 PF06657 Cep57_MT_bd: Centroso 62.5 35 0.00077 29.7 6.9 53 227-279 12-73 (79)
81 PF07889 DUF1664: Protein of u 62.1 91 0.002 29.7 10.0 86 222-325 27-122 (126)
82 PF12128 DUF3584: Protein of u 62.0 3.8E+02 0.0083 33.0 32.8 316 6-333 667-1031(1201)
83 PF04111 APG6: Autophagy prote 61.3 1E+02 0.0022 32.5 11.4 45 133-177 86-130 (314)
84 PF09730 BicD: Microtubule-ass 60.8 2.5E+02 0.0054 33.5 15.2 36 53-88 32-67 (717)
85 PF04156 IncA: IncA protein; 60.4 1.5E+02 0.0033 27.9 15.3 28 160-187 158-185 (191)
86 KOG0994 Extracellular matrix g 60.2 2.9E+02 0.0063 35.3 15.9 131 54-191 1618-1748(1758)
87 PF04822 Takusan: Takusan; In 60.0 25 0.00054 31.3 5.7 64 10-88 19-82 (84)
88 PF05308 Mito_fiss_reg: Mitoch 59.8 7.7 0.00017 40.0 2.9 28 223-251 114-141 (253)
89 KOG0963 Transcription factor/C 59.6 3.6E+02 0.0078 31.9 21.6 29 230-258 247-275 (629)
90 PRK10929 putative mechanosensi 59.3 4.5E+02 0.0097 32.9 27.5 56 12-75 67-122 (1109)
91 PF01576 Myosin_tail_1: Myosin 58.8 3.2 6.9E-05 48.6 0.0 156 15-186 206-368 (859)
92 TIGR01005 eps_transp_fam exopo 58.4 3.3E+02 0.0073 31.2 18.0 48 133-184 346-393 (754)
93 TIGR02338 gimC_beta prefoldin, 57.9 1.4E+02 0.003 26.7 10.6 95 63-184 11-105 (110)
94 PF13851 GAS: Growth-arrest sp 57.1 2.1E+02 0.0046 28.5 16.5 101 103-251 68-169 (201)
95 PF11802 CENP-K: Centromere-as 57.0 1.9E+02 0.0041 30.9 12.3 192 14-222 56-258 (268)
96 KOG0996 Structural maintenance 56.6 5.3E+02 0.011 32.9 20.8 57 64-120 860-923 (1293)
97 PF04156 IncA: IncA protein; 56.5 1.8E+02 0.0039 27.5 16.1 54 139-192 88-141 (191)
98 PF09789 DUF2353: Uncharacteri 56.1 3E+02 0.0065 29.9 18.7 21 17-37 16-36 (319)
99 PLN02939 transferase, transfer 55.8 4.6E+02 0.0099 32.5 16.6 29 129-157 153-181 (977)
100 PF05700 BCAS2: Breast carcino 55.8 1.5E+02 0.0032 29.6 10.9 90 15-110 106-195 (221)
101 PRK09343 prefoldin subunit bet 55.6 1.7E+02 0.0037 27.0 10.5 94 64-184 16-109 (121)
102 PF03962 Mnd1: Mnd1 family; I 55.5 1.5E+02 0.0033 29.2 10.8 48 142-192 106-153 (188)
103 PF15035 Rootletin: Ciliary ro 55.2 1.7E+02 0.0037 29.0 11.1 85 11-98 17-114 (182)
104 KOG0964 Structural maintenance 55.2 5.3E+02 0.011 32.5 22.6 32 155-186 399-430 (1200)
105 PF07200 Mod_r: Modifier of ru 54.6 1.7E+02 0.0037 26.9 10.4 40 57-99 29-68 (150)
106 KOG2685 Cystoskeletal protein 54.2 3.7E+02 0.0081 30.4 17.6 107 204-310 192-303 (421)
107 smart00787 Spc7 Spc7 kinetocho 54.0 3E+02 0.0066 29.3 16.9 122 56-181 138-260 (312)
108 KOG2129 Uncharacterized conser 53.4 1.5E+02 0.0032 33.9 11.3 43 20-71 182-224 (552)
109 PF09789 DUF2353: Uncharacteri 53.1 50 0.0011 35.6 7.6 91 11-122 80-172 (319)
110 COG1579 Zn-ribbon protein, pos 53.0 2.9E+02 0.0063 28.9 16.4 61 131-191 95-155 (239)
111 PF04977 DivIC: Septum formati 52.6 27 0.00059 28.2 4.4 36 53-88 15-50 (80)
112 KOG0977 Nuclear envelope prote 52.3 4.4E+02 0.0095 30.7 23.7 238 11-305 107-362 (546)
113 PF10473 CENP-F_leu_zip: Leuci 51.8 2.3E+02 0.0051 27.4 14.6 27 62-88 52-78 (140)
114 PF15397 DUF4618: Domain of un 50.6 3.3E+02 0.0072 28.8 14.6 86 154-257 7-106 (258)
115 PF05667 DUF812: Protein of un 50.1 4.7E+02 0.01 30.4 18.1 55 205-276 378-435 (594)
116 TIGR02231 conserved hypothetic 50.0 1.6E+02 0.0035 32.4 11.1 44 136-179 128-171 (525)
117 PF05622 HOOK: HOOK protein; 49.8 5.4 0.00012 45.3 0.0 122 64-186 269-403 (713)
118 PF08317 Spc7: Spc7 kinetochor 49.3 3.4E+02 0.0073 28.5 16.5 52 12-73 151-202 (325)
119 TIGR03007 pepcterm_ChnLen poly 48.8 3.8E+02 0.0082 29.0 19.0 60 12-73 163-222 (498)
120 PRK04778 septation ring format 48.6 4.5E+02 0.0097 29.7 30.1 63 522-587 467-529 (569)
121 PF10186 Atg14: UV radiation r 48.6 2.7E+02 0.0059 27.3 15.2 40 146-185 63-102 (302)
122 cd00632 Prefoldin_beta Prefold 48.6 1.5E+02 0.0033 26.1 8.7 76 12-87 15-102 (105)
123 PLN02939 transferase, transfer 48.3 6.3E+02 0.014 31.4 19.0 183 17-203 150-387 (977)
124 PF09304 Cortex-I_coil: Cortex 48.0 2.5E+02 0.0053 26.6 10.6 36 143-178 55-90 (107)
125 KOG0976 Rho/Rac1-interacting s 47.8 6E+02 0.013 31.6 15.5 141 12-184 346-493 (1265)
126 KOG4674 Uncharacterized conser 47.7 8.2E+02 0.018 32.5 36.0 72 11-95 959-1030(1822)
127 PF12325 TMF_TATA_bd: TATA ele 47.4 2.5E+02 0.0054 26.4 12.5 98 61-183 15-112 (120)
128 COG2433 Uncharacterized conser 47.0 2.6E+02 0.0057 33.1 12.4 91 58-180 418-508 (652)
129 PF05064 Nsp1_C: Nsp1-like C-t 46.9 59 0.0013 29.7 6.1 29 106-135 28-56 (116)
130 PF06005 DUF904: Protein of un 46.8 1.4E+02 0.0031 25.8 8.0 43 413-455 19-61 (72)
131 KOG0996 Structural maintenance 46.2 7.5E+02 0.016 31.7 29.3 155 152-323 857-1021(1293)
132 PF04111 APG6: Autophagy prote 45.9 3.9E+02 0.0085 28.3 13.3 20 236-255 110-129 (314)
133 KOG3215 Uncharacterized conser 45.4 3.9E+02 0.0084 28.1 12.3 94 58-166 29-123 (222)
134 TIGR03007 pepcterm_ChnLen poly 44.9 2.1E+02 0.0045 30.9 10.7 45 12-73 249-293 (498)
135 PF06005 DUF904: Protein of un 44.3 1.8E+02 0.0039 25.2 8.3 59 248-306 6-67 (72)
136 PF15397 DUF4618: Domain of un 44.1 4.2E+02 0.0091 28.1 18.2 25 232-256 200-224 (258)
137 KOG0946 ER-Golgi vesicle-tethe 43.8 7.1E+02 0.015 30.8 15.4 37 59-95 668-704 (970)
138 PF07083 DUF1351: Protein of u 43.7 3.5E+02 0.0076 27.1 12.2 109 135-253 60-169 (215)
139 PRK04863 mukB cell division pr 43.7 8.4E+02 0.018 31.5 23.8 74 115-188 265-342 (1486)
140 PF15619 Lebercilin: Ciliary p 43.3 3.5E+02 0.0077 27.0 19.3 124 14-162 16-148 (194)
141 TIGR02473 flagell_FliJ flagell 42.9 2.4E+02 0.0052 25.0 11.6 78 16-98 33-111 (141)
142 KOG0978 E3 ubiquitin ligase in 42.7 6.7E+02 0.015 30.1 20.2 196 11-211 424-656 (698)
143 PF05911 DUF869: Plant protein 42.6 6.9E+02 0.015 30.2 17.2 59 126-184 604-662 (769)
144 PF08317 Spc7: Spc7 kinetochor 42.5 4.3E+02 0.0093 27.8 17.0 96 56-161 143-238 (325)
145 PF03962 Mnd1: Mnd1 family; I 42.4 3.2E+02 0.0069 27.0 10.8 70 11-85 70-140 (188)
146 PF11629 Mst1_SARAH: C termina 42.3 77 0.0017 26.3 5.4 38 268-305 9-46 (49)
147 PF09403 FadA: Adhesion protei 41.9 3.2E+02 0.0069 26.1 12.1 63 54-122 26-93 (126)
148 PF01017 STAT_alpha: STAT prot 41.0 2.1E+02 0.0046 27.8 9.2 95 55-162 2-98 (182)
149 PRK15178 Vi polysaccharide exp 39.9 3E+02 0.0065 31.0 11.2 103 11-137 280-384 (434)
150 KOG4673 Transcription factor T 39.9 7.9E+02 0.017 30.1 16.6 71 114-184 368-440 (961)
151 PRK00409 recombination and DNA 39.2 6E+02 0.013 30.2 14.0 61 37-97 493-555 (782)
152 PF02403 Seryl_tRNA_N: Seryl-t 39.0 2E+02 0.0044 25.1 8.0 25 13-37 39-63 (108)
153 KOG0963 Transcription factor/C 39.0 7.4E+02 0.016 29.5 26.8 58 267-325 372-430 (629)
154 smart00502 BBC B-Box C-termina 38.6 2.4E+02 0.0052 23.8 11.5 45 228-272 75-124 (127)
155 TIGR02338 gimC_beta prefoldin, 37.8 3E+02 0.0065 24.6 9.3 78 12-89 19-108 (110)
156 KOG0933 Structural maintenance 37.6 9.6E+02 0.021 30.4 27.3 52 54-105 676-728 (1174)
157 PF07139 DUF1387: Protein of u 37.4 5.8E+02 0.013 27.8 13.7 114 54-203 149-265 (302)
158 PF07047 OPA3: Optic atrophy 3 35.9 66 0.0014 30.0 4.7 34 134-167 100-133 (134)
159 PF07888 CALCOCO1: Calcium bin 35.8 7.7E+02 0.017 28.8 33.1 87 234-323 359-454 (546)
160 PF05529 Bap31: B-cell recepto 35.7 2.2E+02 0.0048 27.3 8.4 38 139-176 154-191 (192)
161 PF08385 DHC_N1: Dynein heavy 35.5 6.1E+02 0.013 27.5 13.4 34 142-175 220-253 (579)
162 PF05266 DUF724: Protein of un 35.2 3.8E+02 0.0082 26.8 10.1 69 112-180 87-165 (190)
163 PF07111 HCR: Alpha helical co 35.1 9E+02 0.019 29.4 22.6 33 223-255 240-272 (739)
164 PLN03188 kinesin-12 family pro 35.0 1.1E+03 0.024 30.4 18.3 64 121-186 1157-1237(1320)
165 KOG1760 Molecular chaperone Pr 34.5 4.5E+02 0.0098 25.7 10.9 46 229-283 78-123 (131)
166 PF07106 TBPIP: Tat binding pr 34.2 4.1E+02 0.0089 25.1 10.5 76 11-88 73-150 (169)
167 PF00170 bZIP_1: bZIP transcri 33.2 1.5E+02 0.0033 23.9 5.9 38 146-183 26-63 (64)
168 KOG0642 Cell-cycle nuclear pro 32.6 31 0.00068 39.7 2.5 46 126-183 33-78 (577)
169 KOG0971 Microtubule-associated 32.3 1.1E+03 0.025 29.7 27.8 42 46-87 313-357 (1243)
170 PF15066 CAGE1: Cancer-associa 32.0 1.8E+02 0.004 33.4 8.1 63 390-455 367-433 (527)
171 KOG0239 Kinesin (KAR3 subfamil 32.0 9.3E+02 0.02 28.6 15.5 42 12-57 177-218 (670)
172 KOG4687 Uncharacterized coiled 32.0 1.4E+02 0.003 32.6 6.9 72 384-484 19-90 (389)
173 PF09726 Macoilin: Transmembra 31.7 3.9E+02 0.0084 31.6 10.9 95 11-111 539-636 (697)
174 KOG0946 ER-Golgi vesicle-tethe 31.7 1.1E+03 0.024 29.3 28.4 343 9-455 578-933 (970)
175 PF13851 GAS: Growth-arrest sp 31.4 5.4E+02 0.012 25.7 14.1 97 12-116 57-155 (201)
176 PF05529 Bap31: B-cell recepto 31.3 2.4E+02 0.0053 27.1 7.9 65 16-82 117-181 (192)
177 PF05622 HOOK: HOOK protein; 31.1 16 0.00035 41.6 0.0 105 14-118 402-523 (713)
178 COG5185 HEC1 Protein involved 30.8 7.5E+02 0.016 29.1 12.4 52 65-120 267-318 (622)
179 PF10481 CENP-F_N: Cenp-F N-te 30.1 7.7E+02 0.017 27.0 13.8 62 158-256 72-133 (307)
180 KOG3091 Nuclear pore complex, 30.0 4.7E+02 0.01 30.3 10.8 73 15-106 374-448 (508)
181 PF03148 Tektin: Tektin family 29.7 7.5E+02 0.016 26.8 18.0 194 232-454 71-286 (384)
182 PF09832 DUF2059: Uncharacteri 29.2 1.2E+02 0.0027 24.1 4.7 43 90-133 4-46 (64)
183 PF07352 Phage_Mu_Gam: Bacteri 29.2 3.3E+02 0.0071 25.5 8.2 78 142-226 6-84 (149)
184 PF04129 Vps52: Vps52 / Sac2 f 28.8 8.7E+02 0.019 27.3 15.6 66 124-192 16-81 (508)
185 KOG4657 Uncharacterized conser 28.7 1.6E+02 0.0035 31.1 6.5 68 16-86 50-117 (246)
186 KOG1029 Endocytic adaptor prot 28.7 1.2E+03 0.027 29.0 24.8 56 258-313 540-598 (1118)
187 PF10473 CENP-F_leu_zip: Leuci 28.3 5.6E+02 0.012 24.9 16.0 38 56-96 25-62 (140)
188 PF06810 Phage_GP20: Phage min 28.1 1.5E+02 0.0033 28.5 5.9 67 125-195 37-107 (155)
189 PF13118 DUF3972: Protein of u 27.9 78 0.0017 30.4 3.9 34 526-559 87-124 (126)
190 PF10474 DUF2451: Protein of u 27.9 6.4E+02 0.014 25.8 10.5 97 195-300 53-154 (234)
191 cd00890 Prefoldin Prefoldin is 27.1 4E+02 0.0087 23.3 7.9 39 60-98 4-42 (129)
192 PF13863 DUF4200: Domain of un 27.0 4.4E+02 0.0096 23.3 13.2 71 92-162 27-97 (126)
193 PF01166 TSC22: TSC-22/dip/bun 26.9 52 0.0011 28.2 2.2 32 236-268 11-42 (59)
194 PF06156 DUF972: Protein of un 26.8 1.9E+02 0.004 26.7 6.0 44 409-453 13-56 (107)
195 PF04999 FtsL: Cell division p 26.8 1.5E+02 0.0032 25.6 5.1 42 46-87 26-67 (97)
196 PF09325 Vps5: Vps5 C terminal 26.7 5.8E+02 0.012 24.5 17.6 85 116-203 119-210 (236)
197 PF07798 DUF1640: Protein of u 26.4 5.9E+02 0.013 24.5 10.0 74 232-305 73-158 (177)
198 PF10168 Nup88: Nuclear pore c 26.3 1.2E+03 0.025 27.9 18.7 69 94-167 597-667 (717)
199 TIGR00309 V_ATPase_subD H(+)-t 26.2 6.6E+02 0.014 25.0 14.4 65 223-289 119-190 (209)
200 PF14552 Tautomerase_2: Tautom 26.2 46 0.001 29.0 1.9 36 191-226 46-82 (82)
201 PF10226 DUF2216: Uncharacteri 26.1 7.5E+02 0.016 25.6 14.0 119 10-172 16-141 (195)
202 KOG0980 Actin-binding protein 25.9 1.4E+03 0.03 28.7 19.4 137 18-179 373-513 (980)
203 smart00338 BRLZ basic region l 25.4 2.8E+02 0.006 22.5 6.1 38 146-183 26-63 (65)
204 PF09787 Golgin_A5: Golgin sub 25.2 1E+03 0.022 26.8 27.5 52 11-62 110-162 (511)
205 TIGR02209 ftsL_broad cell divi 25.2 1.7E+02 0.0037 24.3 5.0 30 58-87 27-56 (85)
206 PF02183 HALZ: Homeobox associ 25.2 1.5E+02 0.0033 23.7 4.4 37 59-98 2-38 (45)
207 PF10805 DUF2730: Protein of u 25.0 1.3E+02 0.0028 27.2 4.5 39 230-268 63-106 (106)
208 PF07321 YscO: Type III secret 24.9 4.2E+02 0.009 25.9 8.2 49 50-98 76-124 (152)
209 PF13094 CENP-Q: CENP-Q, a CEN 24.8 3.5E+02 0.0075 25.4 7.5 34 224-257 19-52 (160)
210 PRK05431 seryl-tRNA synthetase 24.8 2.3E+02 0.005 31.0 7.2 22 14-35 39-60 (425)
211 PF01813 ATP-synt_D: ATP synth 24.5 6.6E+02 0.014 24.4 10.1 37 123-164 11-47 (196)
212 KOG0483 Transcription factor H 24.1 88 0.0019 31.7 3.7 32 56-87 106-137 (198)
213 PF12711 Kinesin-relat_1: Kine 23.9 1.1E+02 0.0024 27.6 3.9 48 37-85 7-60 (86)
214 PF02996 Prefoldin: Prefoldin 23.9 4.9E+02 0.011 22.7 9.6 79 11-89 4-118 (120)
215 PF11365 DUF3166: Protein of u 23.7 1E+02 0.0022 28.4 3.6 33 60-93 13-45 (96)
216 PHA02047 phage lambda Rz1-like 23.6 3.3E+02 0.0071 25.6 6.9 57 233-314 28-84 (101)
217 PF06156 DUF972: Protein of un 23.5 1.8E+02 0.004 26.7 5.3 38 54-91 14-51 (107)
218 PF04065 Not3: Not1 N-terminal 23.4 1.7E+02 0.0037 30.3 5.6 82 230-325 127-208 (233)
219 PF06785 UPF0242: Uncharacteri 23.0 6.8E+02 0.015 28.2 10.1 52 53-104 139-190 (401)
220 PF00170 bZIP_1: bZIP transcri 23.0 2.4E+02 0.0051 22.9 5.3 35 420-454 27-61 (64)
221 KOG0250 DNA repair protein RAD 22.7 1.7E+03 0.036 28.4 25.8 35 526-560 873-907 (1074)
222 PRK15041 methyl-accepting chem 22.6 1.1E+03 0.024 26.3 16.6 31 40-70 391-423 (554)
223 TIGR03752 conj_TIGR03752 integ 22.6 6.6E+02 0.014 28.9 10.3 35 143-177 63-97 (472)
224 COG2900 SlyX Uncharacterized p 22.5 3.8E+02 0.0083 23.9 6.7 50 150-202 5-61 (72)
225 PF02388 FemAB: FemAB family; 22.2 3.7E+02 0.008 29.0 8.1 49 230-282 240-288 (406)
226 PF07926 TPR_MLP1_2: TPR/MLP1/ 22.1 6.3E+02 0.014 23.3 15.3 76 98-176 53-128 (132)
227 PRK14153 heat shock protein Gr 22.0 2.9E+02 0.0062 28.0 6.7 50 130-184 22-71 (194)
228 PF14662 CCDC155: Coiled-coil 21.9 8.9E+02 0.019 25.0 16.9 145 10-183 22-188 (193)
229 PF09006 Surfac_D-trimer: Lung 21.9 1.2E+02 0.0026 25.0 3.4 24 234-257 1-24 (46)
230 KOG3091 Nuclear pore complex, 21.8 1.3E+03 0.028 26.9 16.5 87 78-191 342-428 (508)
231 PRK10636 putative ABC transpor 21.8 3.4E+02 0.0073 31.0 8.0 68 18-88 564-631 (638)
232 PF12001 DUF3496: Domain of un 21.8 5.8E+02 0.013 24.1 8.2 34 141-174 45-78 (111)
233 PRK13694 hypothetical protein; 21.5 3E+02 0.0065 25.1 6.1 34 12-45 14-47 (83)
234 PF04012 PspA_IM30: PspA/IM30 21.5 7.6E+02 0.016 24.0 15.2 84 14-123 27-110 (221)
235 TIGR01069 mutS2 MutS2 family p 21.3 1.4E+03 0.03 27.3 13.0 58 37-94 488-547 (771)
236 PF12808 Mto2_bdg: Micro-tubul 21.1 1.5E+02 0.0032 24.8 3.8 27 228-254 25-51 (52)
237 PF12761 End3: Actin cytoskele 21.0 7E+02 0.015 25.7 9.2 108 121-274 85-192 (195)
238 PF09798 LCD1: DNA damage chec 20.9 3.3E+02 0.0071 32.3 7.8 62 421-483 14-75 (654)
239 COG3707 AmiR Response regulato 20.8 1.6E+02 0.0034 30.2 4.7 43 52-96 122-173 (194)
240 PF14131 DUF4298: Domain of un 20.7 4.2E+02 0.009 23.4 6.8 62 157-219 4-70 (90)
241 PF06632 XRCC4: DNA double-str 20.6 8.4E+02 0.018 26.7 10.3 29 15-43 52-80 (342)
242 PF06698 DUF1192: Protein of u 20.5 1.2E+02 0.0026 25.8 3.2 38 214-253 12-49 (59)
243 cd07666 BAR_SNX7 The Bin/Amphi 20.5 9.9E+02 0.021 25.0 17.6 109 54-182 94-210 (243)
244 COG1711 DNA replication initia 20.5 2.8E+02 0.006 29.1 6.4 81 232-323 32-112 (223)
245 KOG3958 Putative dynamitin [Cy 20.4 5.5E+02 0.012 28.5 8.7 41 11-51 88-133 (371)
246 TIGR02894 DNA_bind_RsfA transc 20.4 8.9E+02 0.019 24.4 10.9 39 146-184 111-149 (161)
247 PRK00373 V-type ATP synthase s 20.3 8.4E+02 0.018 24.1 11.4 36 124-164 22-57 (204)
248 smart00340 HALZ homeobox assoc 20.2 1.4E+02 0.0031 24.4 3.4 33 61-93 4-36 (44)
249 PF12709 Kinetocho_Slk19: Cent 20.1 2.7E+02 0.0058 25.4 5.5 41 150-190 46-86 (87)
250 PF14197 Cep57_CLD_2: Centroso 20.1 5.7E+02 0.012 22.0 7.8 32 59-90 2-33 (69)
251 PF05266 DUF724: Protein of un 20.0 7.7E+02 0.017 24.7 9.2 67 388-454 89-173 (190)
No 1
>PRK09039 hypothetical protein; Validated
Probab=97.23 E-value=0.048 Score=56.93 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=63.7
Q ss_pred CchHhhhhhH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179 43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK 105 (658)
Q Consensus 43 pgyl~vATrM-----------------~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~K 105 (658)
||||++-|-+ ++|-..++++++..|+.+++. |+++-+-+...
T Consensus 17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~ 75 (343)
T PRK09039 17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG 75 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 9999987754 356677777777777776655 55555555555
Q ss_pred hHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 106 n~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
+..++..+.=.+.....|-++|+. .| ..-. .......+.+.|+..++..+..+|..-...+.+...+..|.+
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~ 147 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIA 147 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555544444431 11 1000 001122355566666666666666665555666666665555
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.13 E-value=0.34 Score=48.34 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYR 90 (658)
-++.+.||..||.+...|...|..+.--... |+-+ -..++.+|..|+.++..++.++-.|+-++..+..
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4677889999999999999999999876422 3211 2456888999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhH
Q 006179 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (658)
Q Consensus 91 iK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaK 138 (658)
--..+-.-|..+...+..+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 777776667888999999999998888777777777766544444444
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.54 E-value=0.47 Score=50.47 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
+..++.+++.+.+.|+..|+.+=-|.+. +.++.....-.....+.++.+++.+..+....-.+-.+|++++.+.+
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666665444433 44555555555566777777777777777777666677777776664
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.21 E-value=5.9 Score=50.48 Aligned_cols=382 Identities=22% Similarity=0.231 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHH-HHH
Q 006179 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AEK 136 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE-aEk 136 (658)
..++.+|+.++.++..-+|.+++|...+..+-+=+.+|-+.+--+...-.++++++.=--.-++++-+.=+..+.. .|.
T Consensus 1297 ~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~ee 1376 (1930)
T KOG0161|consen 1297 QALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEE 1376 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999988887777777766666666666667766655555555555444444444 444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc---cc
Q 006179 137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK---CA 213 (658)
Q Consensus 137 aKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K---c~ 213 (658)
+.|.-...-+.+.+.+++++.+...+....+..-.||.++..+.--++....++. |.+-.+...+-.=..|..+ -+
T Consensus 1377 lee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l~ 1455 (1930)
T KOG0161|consen 1377 LEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKLQ 1455 (1930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667888999999999999999988888888777665444432222111 2222222221111334444 35
Q ss_pred ccccccccccccCCcchHHHHHHHHHHHH---HHHHhHHHHHhhhhhhHHHHHH-------hHHhHHHHHHh----hhhh
Q 006179 214 CLLLDSAEMWSFNDTSTSKYISALEDELE---KTRSSVENLQSKLRMGLEIENH-------LKKSVRELEKK----IIHS 279 (658)
Q Consensus 214 ~LL~ds~~~Wsfn~tstskyi~aLEeEle---~lr~~i~~LQsklR~GLeIenh-------Lkk~vr~Lekk----qi~~ 279 (658)
..++.....|.=-+|...++-.+|++-++ .++..-.+|++.+.=--.=.+- |++..|.||.. |.-+
T Consensus 1456 ~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aL 1535 (1930)
T KOG0161|consen 1456 AELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAAL 1535 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777667777777666666553 3333333333332210000001 23333333333 1111
Q ss_pred HHHHH------HHHHHHHHhhhhhHHHHHHhhhhcc-----------hhhhhhHHHHHhhhccccccccccccCCC--cc
Q 006179 280 DKFIS------NAIAELRLCHSQLRVHVVNSLEEGR-----------SHIKSISDVIEEKTQHCDDVIRGQNTGTY--QR 340 (658)
Q Consensus 280 dk~i~------ngi~~lq~~h~~~R~~Im~lL~ee~-----------s~i~s~v~~ieekl~~~~n~~~E~n~~~p--q~ 340 (658)
+..-. ...--++--+.+.|.+|..-|.+-. ..|.++.+.+++..+.+. |..+..- .+
T Consensus 1536 eElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~----e~~r~KKkle~ 1611 (1930)
T KOG0161|consen 1536 EELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKS----EALRSKKKLEG 1611 (1930)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHhhhhhhhc
Confidence 11111 1111134446666666666553211 122233333332221111 1111111 00
Q ss_pred -----ccccccccccceeeccCCCCccccCCCCCCcchhhhcccCCchHHHHHHH--HHHHHHHH---------hhchHH
Q 006179 341 -----ETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQAL--QEKVAALL---------LLSQQE 404 (658)
Q Consensus 341 -----e~~~~e~ec~dVhv~~d~~p~~~~k~~~ps~~~~~~d~~~d~s~aLAqAL--~EKveALl---------LlSQqe 404 (658)
+++++.+.-. .....++...-...+|.+.+...|-.....+++||.. ..|.+||- +=+..-
T Consensus 1612 di~elE~~ld~ank~---~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~R 1688 (1930)
T KOG0161|consen 1612 DINELEIQLDHANKA---NEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALER 1688 (1930)
T ss_pred chHHHHHHHHHHHHh---hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112221111 1111222333344455555555555666667765532 23444331 222334
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHH
Q 006179 405 ERHLLERNVNSALQKKIEELQRNL---FQVTTEKVKALMELAQLKQDYQL 451 (658)
Q Consensus 405 ER~llE~~~n~~Lq~~ieeLqrnl---~QVt~EKVkaLmELAqLkq~y~l 451 (658)
.|-.+|...+.. .|.++... +..+++|-|.=-+|++|..++..
T Consensus 1689 arr~aE~e~~E~----~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee 1734 (1930)
T KOG0161|consen 1689 ARRQAELELEEL----AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEE 1734 (1930)
T ss_pred HHHhhHHHHHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 555666665544 66666655 55788999999999999887765
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.08 E-value=4.8 Score=48.18 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhh
Q 006179 259 LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307 (658)
Q Consensus 259 LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~e 307 (658)
++-...+.++.+.|..+..-+++=...=...+......-|...|.....
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~ 1017 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDK 1017 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777765555544444444444444444444444333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=95.76 E-value=4.9 Score=45.75 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhh
Q 006179 233 YISALEDELEKTRSSVENLQSKLRMG 258 (658)
Q Consensus 233 yi~aLEeEle~lr~~i~~LQsklR~G 258 (658)
.++.|+.+++.++..++.+.+.+...
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~ 508 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAE 508 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.75 E-value=4.8 Score=45.63 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 006179 233 YISALEDELEKTRSSVENL 251 (658)
Q Consensus 233 yi~aLEeEle~lr~~i~~L 251 (658)
.|..|+.+++.|.+.|+.+
T Consensus 966 ~~~~l~~~i~~lg~aiee~ 984 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKEL 984 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 3445555555555544433
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.59 E-value=5.8 Score=45.39 Aligned_cols=20 Identities=15% Similarity=0.468 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhHHHHHh
Q 006179 234 ISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQs 253 (658)
++.++.+++.+++.++++-.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~ 972 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEP 972 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45778888888888877665
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.79 E-value=13 Score=45.09 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
-.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus 223 r~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 223 RDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666555555444
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.61 E-value=10 Score=43.06 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQLC 37 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqLC 37 (658)
..+...+.+|+.+.+++++.++.+-
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~ 697 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELE 697 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655543
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.44 E-value=13 Score=43.66 Aligned_cols=116 Identities=28% Similarity=0.408 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcc
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSN 80 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~---qRta~LEQ----eiE~Lkkkl-------~~c~ren~n 80 (658)
|.+++..++.|.|-|++++|-. +.-.|..--++-| .|+ -|..++.. ++..++.++ ...-.+-++
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~ 78 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQA 78 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3468889999999999999987 4444554444433 121 12222222 233344444 444445567
Q ss_pred hHHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHH
Q 006179 81 LQEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (658)
Q Consensus 81 LQeELsEA----YRiK~qLadLh~-ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE 139 (658)
||+|| .+ ||+..++-.-.+ .+-... +++ -|+-+.+..||||....|.+....
T Consensus 79 LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~ 135 (775)
T PF10174_consen 79 LQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRK 135 (775)
T ss_pred HHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 55 555555443311 111111 222 367788889999999999888773
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=93.80 E-value=15 Score=41.90 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR 256 (658)
..|..++++++.+.+.++.+..++.
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666766666554
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=93.63 E-value=16 Score=41.52 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhh
Q 006179 15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqL---------CMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~r 76 (658)
+..++.+++.+.++|.+-++.| |-+.=||.|-.-.+-=+-++...|+.+|+.|++++..+..
T Consensus 410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555444322 3444444443333223344445555555555555554444
No 14
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.34 E-value=17 Score=41.50 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=62.8
Q ss_pred HHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHH
Q 006179 239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 318 (658)
Q Consensus 239 eEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ 318 (658)
+++..+|.++..+...+|-==+.-+-|.+.+..|-|. ..-......|.++-+---+|+++|.+||.|-+. |..=+|.
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~-lQkeiN~ 523 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE-LQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5666777777777777776555555565555555444 444556677888888888999999999999875 5667899
Q ss_pred HHhhhcccccc
Q 006179 319 IEEKTQHCDDV 329 (658)
Q Consensus 319 ieekl~~~~n~ 329 (658)
+..||.-.+.|
T Consensus 524 l~gkL~RtF~v 534 (594)
T PF05667_consen 524 LTGKLDRTFTV 534 (594)
T ss_pred HHHHHHhHHHH
Confidence 99999444455
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.04 E-value=21 Score=41.11 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
+...+..+++.++.++.....+-..+++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~ 263 (1164)
T TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISEL 263 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666555555555555443
No 16
>PRK09039 hypothetical protein; Validated
Probab=93.03 E-value=14 Score=39.12 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQE 83 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQe 83 (658)
-|...|..++.|-++|..-|-+ ++..--|--+|++.|+++|..++.++....+.+.-|+.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999988877 77777888899999999999999988876666554444
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.95 E-value=35 Score=41.19 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=25.4
Q ss_pred hHHHHHH-HHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 006179 402 QQEERHL-LERNVNSALQKKIEELQRNLFQVTTEKVKALMELA 443 (658)
Q Consensus 402 QqeER~l-lE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELA 443 (658)
.-++||- |..+.... ..-.+.|+.-+..++.++...+|+.-
T Consensus 974 ~~~~r~~~l~~~~~dl-~~a~~~l~~~i~~~d~~~~~~f~~~f 1015 (1163)
T COG1196 974 EVEERYEELKSQREDL-EEAKEKLLEVIEELDKEKRERFKETF 1015 (1163)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444442 34444333 33477788888888888888888754
No 18
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.89 E-value=43 Score=42.16 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=31.4
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 51 rM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
|.++.-+++..+.....+++|...-..-..+.+++. -|+.++..|
T Consensus 282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL 326 (1486)
T PRK04863 282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL 326 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 677888888888787777777777666666666663 456666655
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.80 E-value=2.5 Score=42.15 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI 91 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRi 91 (658)
..++..|+.+||.|-.+|+..+..+=-+ +.+|++.|++.+...++.+.....+|..|++||.. .
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~---~ 151 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV---A 151 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4567788889999998888877774422 67999999999999999999999999999999987 3
Q ss_pred HHHHHHH
Q 006179 92 KGQLADL 98 (658)
Q Consensus 92 K~qLadL 98 (658)
+..+..|
T Consensus 152 ~~~~~~l 158 (206)
T PRK10884 152 QKKVDAA 158 (206)
T ss_pred HHHHHHH
Confidence 5555544
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.68 E-value=16 Score=36.69 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=100.5
Q ss_pred HhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006179 111 KQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (658)
Q Consensus 111 kqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI 190 (658)
++|.-...--|+.-.++|+.-.+++..+.+=+.-.+.....+.-+..+.+.+++..-....|+..+..+++......++
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~- 139 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN- 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh-
Confidence 3444444445777777888888888877766666677777777777777777777777777777777777777633332
Q ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHH------------HHhHHHHHhhhhhh
Q 006179 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKT------------RSSVENLQSKLRMG 258 (658)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~l------------r~~i~~LQsklR~G 258 (658)
|+= +-.++.-.-. -..+.+++.|-++..+..+..+-.+.+.. ..++..++......
T Consensus 140 ---hee-----Ei~~L~~~~~----~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~ 207 (312)
T PF00038_consen 140 ---HEE-----EIEELREQIQ----SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKS 207 (312)
T ss_dssp ---HHH-----HHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhh-----hhhhhhhccc----cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccc
Confidence 221 1111111111 23344555555554556555554444322 33444444433331
Q ss_pred ------HHHHH-HhHHhHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHH
Q 006179 259 ------LEIEN-HLKKSVRELEKKII---HSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVI 319 (658)
Q Consensus 259 ------LeIen-hLkk~vr~Lekkqi---~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~i 319 (658)
+--|. .+++.+..|+.+.. --...+.+.|.++.+.|...+...-..+..=...|..+-..+
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 11111 23444444444432 224566788888888888777665555444444444444444
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.61 E-value=53 Score=42.58 Aligned_cols=180 Identities=24% Similarity=0.278 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhcCCchHhhhhhHHH-----HhhhhhHHHHHHHHHHHHHhhhhh
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQ-------LCMQQAGPSYLAVATRMHF-----QRTAGLEQEIEILKQKIAACAREN 78 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEq-------LCMQQaGpgyl~vATrM~~-----qRta~LEQeiE~Lkkkl~~c~ren 78 (658)
..-.+...+.+++||.+.|++-+|- |=-+-+-..--++..|+-+ ||+..++-....+..++.++....
T Consensus 1316 ~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~ 1395 (1930)
T KOG0161|consen 1316 EKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQI 1395 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3557788899999999988875441 1112122233344555544 344444444333333333322111
Q ss_pred cchHHHHHHHHHHHHH----HHHHH---HHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHH
Q 006179 79 SNLQEELSEAYRIKGQ----LADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEF 151 (658)
Q Consensus 79 ~nLQeELsEAYRiK~q----LadLh---~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~ 151 (658)
..+..--..-=+.|.+ +.|+- ..-.+....+|++.+=|.+-+|.-=-..|...-|-+-+..-...-..++..+
T Consensus 1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1110000000011222 12221 1233445677888888877776544444444444444444444445777778
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006179 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (658)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI 190 (658)
..+++|+..+++...+.|..|+.++..++.+..-.-+.+
T Consensus 1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899988999999999999999999988887555554
No 22
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.30 E-value=14 Score=42.48 Aligned_cols=170 Identities=21% Similarity=0.315 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ---AGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQ---aGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
..+..+.||+.||+.--+|+.-+...= .. |||.=.. . =+-.++..|.++++.|..++.+-+++|..|-.-..
T Consensus 44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E--~-~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~- 118 (617)
T PF15070_consen 44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVE--Q-QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ- 118 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 355677888888887777765443311 22 2232222 1 23346777999999999999999999987633222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 88 AYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 88 AYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
.-+.+|++|-..--....+.+- .++-+++.=++| .-+-+|-..-..+-+++.+++.+.-.++.+.. +
T Consensus 119 --EqEerL~ELE~~le~~~e~~~D----~~kLLe~lqsdk----~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~---e 185 (617)
T PF15070_consen 119 --EQEERLAELEEELERLQEQQED----RQKLLEQLQSDK----ATASRALSQNRELKEQLAELQDAFVKLTNENM---E 185 (617)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccc----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh---H
Confidence 3356666662210000111111 112222221111 12334433334444555555555554433221 3
Q ss_pred hhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006179 168 QNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (658)
Q Consensus 168 ~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~ 198 (658)
+..+||.+.-+-++-...+-.+=.|..+++-
T Consensus 186 lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 186 LTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888877777777766666666666653
No 23
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.07 E-value=2.4 Score=40.89 Aligned_cols=78 Identities=29% Similarity=0.278 Sum_probs=2.7
Q ss_pred chHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhh----------------------hhcchHHHHHHHHHHHHHHHHHHHH
Q 006179 44 SYLAVATRMHFQRTAGLEQEIEILKQKIAACAR----------------------ENSNLQEELSEAYRIKGQLADLHAA 101 (658)
Q Consensus 44 gyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~r----------------------en~nLQeELsEAYRiK~qLadLh~a 101 (658)
.|+...+| +++|++.|+++...|+.....+.. --..||+||+++||.+++++.---.
T Consensus 21 ~li~ay~~-L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 21 ELIDAYNR-LADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444455 356777777777766653211111 1134899999999999999976555
Q ss_pred HHHhhHHHHHhHhHhhhhhHH
Q 006179 102 EVIKNMEAEKQVKFFQGCMAA 122 (658)
Q Consensus 102 e~~Kn~e~EkqvkFfQs~vA~ 122 (658)
.-.++.++++...=-+..++.
T Consensus 100 ~~~~l~~l~~~~~~~~~~l~~ 120 (194)
T PF08614_consen 100 LNDELQELEKELSEKERRLAE 120 (194)
T ss_dssp --------------HHHHHHH
T ss_pred cccccchhhhhHHHHHHHHHH
Confidence 455555555554443333333
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.53 E-value=40 Score=39.30 Aligned_cols=89 Identities=27% Similarity=0.373 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchH
Q 006179 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTS 231 (658)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tsts 231 (658)
..|..++++.+ +.|++||...+|+.. .......++|.+.-+- +.-+-+ ..
T Consensus 544 r~r~~~lE~E~-------~~lr~elk~kee~~~---~~e~~~~~lr~~~~e~-----~~~~e~---------------L~ 593 (697)
T PF09726_consen 544 RQRRRQLESEL-------KKLRRELKQKEEQIR---ELESELQELRKYEKES-----EKDTEV---------------LM 593 (697)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-----hhhHHH---------------HH
Confidence 34555555444 456777777777776 4445556777653110 000111 33
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHH
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELE 273 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Le 273 (658)
..++++++....|.++++ ..=||=|+++-.|-.--|.||
T Consensus 594 ~aL~amqdk~~~LE~sLs---aEtriKldLfsaLg~akrq~e 632 (697)
T PF09726_consen 594 SALSAMQDKNQHLENSLS---AETRIKLDLFSALGDAKRQLE 632 (697)
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887765 456777888888866656555
No 25
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.41 E-value=56 Score=40.76 Aligned_cols=92 Identities=18% Similarity=0.053 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHhhh-hhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHH
Q 006179 58 AGLEQEIEILKQKIAACAR-ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~r-en~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEk 136 (658)
++|++.|+.++.....|.| +--=+|.+.+++-+.=++..+.-..--..+.+++.+++=-|-..+.++-+-+++.-+.-.
T Consensus 468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 468 KELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3455555555555555554 222244444444444333333333333444444444444455555555555555555444
Q ss_pred hHHHHHHHHHHHH
Q 006179 137 AKEKEELMSQKFN 149 (658)
Q Consensus 137 aKE~Ee~m~qk~~ 149 (658)
+.+.+..|..++.
T Consensus 548 le~~~~d~~~e~~ 560 (1317)
T KOG0612|consen 548 LEEAELDMRAESE 560 (1317)
T ss_pred HHHhhhhhhhhHH
Confidence 4455555554444
No 26
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.10 E-value=17 Score=34.31 Aligned_cols=123 Identities=26% Similarity=0.371 Sum_probs=83.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc
Q 006179 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 211 (658)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K 211 (658)
+|++-|-++-+..-+++.+++.|.....-.+.....-|..|..++..+.++......-+. +--.+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le---e~~~~~----------- 72 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE---ESEKRK----------- 72 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH-----------
Confidence 455666666666668888888888888888877777777777777777776663322221 111100
Q ss_pred ccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 006179 212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 281 (658)
Q Consensus 212 c~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk 281 (658)
+-++ +..+-|.-||++++.....+.-..-+||=.=.=-.|+-|+|..||.+..-|.+
T Consensus 73 ------------~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 73 ------------SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred ------------HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 0001 46788999999999998888888888774322234889999999988765543
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=90.00 E-value=40 Score=38.42 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 135 EkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
+.+++..+....++..++.++..++..+.+...--..|+..+..+.+..
T Consensus 234 ~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555544444433344444444444433
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.99 E-value=48 Score=39.32 Aligned_cols=174 Identities=21% Similarity=0.259 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCM--QQaGpg-yl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
..+.+-.||..++.++|...-.|+.|-- |-.||+ +-...+.-...|.+++|..+..|+..+.---.++.-+.++|-.
T Consensus 136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~ 215 (775)
T PF10174_consen 136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR 215 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4677888899999999999999988754 777844 5566666677799999999988888777777777666666666
Q ss_pred HHHHHHH------HHHHHH------HHHHhhHH-HHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHH---------
Q 006179 88 AYRIKGQ------LADLHA------AEVIKNME-AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS--------- 145 (658)
Q Consensus 88 AYRiK~q------LadLh~------ae~~Kn~e-~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~--------- 145 (658)
.|....- +-.+.- +++.++.+ +|-.+.-.++.++.+-++||--.-++|--+-.-..|-
T Consensus 216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e 295 (775)
T PF10174_consen 216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE 295 (775)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5543211 111111 33333322 5667777777777777788766333333222222222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 146 -----qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
+.+..++.|++.+.+...+.+.=-+.|+.++.....+.+
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~ 339 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAE 339 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344445555554444444444444444444444444
No 29
>PRK11637 AmiB activator; Provisional
Probab=89.92 E-value=30 Score=36.92 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYR 90 (658)
....++++|..++.++.....+=..+++++.+.+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555443
No 30
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.87 E-value=39 Score=38.12 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQ 62 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQ 62 (658)
+.+.+++.+++.++++.++.+.++| +|++++..++-.+.+=-.-++.
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l~~l~---~~~~p~~l~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQLRELA---ADPLPLLLIPNLLDSTKAQLQK 311 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHhhhHHHHHHHHHHHHH
Confidence 3566677777777777776655554 7788888887665543333333
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.28 E-value=25 Score=35.05 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~K 192 (658)
....+++.+.+.|.+.++..+....+..+.|.-+|...++....+.+-++.
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666666666666666555554443
No 32
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.27 E-value=1.6 Score=49.35 Aligned_cols=124 Identities=21% Similarity=0.206 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcch
Q 006179 151 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 230 (658)
Q Consensus 151 ~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tst 230 (658)
..+++..++..+....+-+..|+.++..++.+.+.. .+|+ .--...-|+=.|=+.|.-.|-+.-
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~g-----~~~~~~trVL~lr~NP~~~~~~~k--- 564 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKL--------TLQG-----EFNPSKTRVLHLRDNPTSKAEQIK--- 564 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCT-------BTTTEEEEEESS-HHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcc-----ccCCCCceeeeeCCCcHHHHHHHH---
Confidence 345555566666666666666666666666655511 0111 111233455566666665555442
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 006179 231 SKYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL 290 (658)
Q Consensus 231 skyi~aLEeEle~lr~~i~~LQsklR~--------GLeIe----nhLkk~vr~Lekkqi~~dk~i~ngi~~l 290 (658)
..-+.+|..|++.|++.+..|...-.. ++..- +-|+..+..++|+..-+-.++...+.++
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677777777777777655432111 12221 2356666677776666666665555544
No 33
>PRK11637 AmiB activator; Provisional
Probab=89.03 E-value=35 Score=36.45 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 006179 52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (658)
Q Consensus 52 M~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELs 86 (658)
+++.-++.++++++.+++++...-.+-..++.++.
T Consensus 37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567778888888776655444444444444
No 34
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.90 E-value=9.6 Score=35.53 Aligned_cols=100 Identities=22% Similarity=0.281 Sum_probs=70.6
Q ss_pred CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHH
Q 006179 43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (658)
Q Consensus 43 pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~ 122 (658)
...+....||.++ ...+|-|+-.||.+++...++...+.+|+....+--..+.. .......+++
T Consensus 12 ~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~----~~~~~~~L~~----------- 75 (120)
T PF12325_consen 12 GPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA----LKKEVEELEQ----------- 75 (120)
T ss_pred CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------
Confidence 3345666677654 66788889999999999999999999988876655444422 2333333443
Q ss_pred HHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (658)
Q Consensus 123 AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~ 168 (658)
+.+....+-.++++-+-+-.++++||+.++.+.|.+
T Consensus 76 ----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 76 ----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred ----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334455778888888888888999999998888854
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.24 E-value=12 Score=42.16 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
..|.+++.+++.++...+++..++++.|-.|+.++-....+.+
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3566889999999999999999999999998887766544443
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.59 E-value=79 Score=38.79 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcc--cccccccccccccccccc
Q 006179 147 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET--SWEDKCACLLLDSAEMWS 224 (658)
Q Consensus 147 k~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~--s~~~Kc~~LL~ds~~~Ws 224 (658)
....+..++.+.++.+......-+.|+.++..+..+.+...++=-+.=++....-.-..+ .+.++-.-++. .|.
T Consensus 495 ~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~ 570 (1311)
T TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG----YFP 570 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCC
Confidence 445566666666666666666666666666665555544333322222221111111001 11111111221 331
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 006179 225 FNDTSTSKYISALEDELEKTRSSVENLQSKLRM 257 (658)
Q Consensus 225 fn~tstskyi~aLEeEle~lr~~i~~LQsklR~ 257 (658)
-+ .....++.++..++..++..++.++.++.-
T Consensus 571 ~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~ 602 (1311)
T TIGR00606 571 NK-KQLEDWLHSKSKEINQTRDRLAKLNKELAS 602 (1311)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 446788888888888888888888877743
No 37
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.30 E-value=47 Score=35.82 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhh----hHHHHHHh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRM----GLEIENHL 265 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~----GLeIenhL 265 (658)
.+.+|..|-+|+..||+++..-|..--+ -+..+.|+
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~i 266 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEI 266 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988765433 24555554
No 38
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=87.23 E-value=41 Score=36.06 Aligned_cols=194 Identities=23% Similarity=0.269 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK 92 (658)
-.+..--.+++.-|+||++---+- | --.|+.|+- .+|+.-|+-+|++||. +--++|
T Consensus 66 ~~~~seq~~~~~a~~elq~~ks~~--Q--~e~~v~a~e---~~~~rll~d~i~nLk~-----------------se~~lk 121 (330)
T KOG2991|consen 66 KVRLSEQDFKVMARDELQLRKSWK--Q--YEAYVQALE---GKYTRLLSDDITNLKE-----------------SEEKLK 121 (330)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHhc---CcccchhHHHHHhhHH-----------------HHHHHH
Confidence 344444566777888887532111 1 134555543 3888889999999987 223566
Q ss_pred HHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006179 93 GQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATL 172 (658)
Q Consensus 93 ~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~L 172 (658)
.|+++- +.+|....-.++.-++-+.||.|++-+.|.+-.--
T Consensus 122 qQ~~~a---------------------------------------~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps 162 (330)
T KOG2991|consen 122 QQQQEA---------------------------------------ARRENILVMRLATKEQEMQECTSQIQYLKQQQQPS 162 (330)
T ss_pred HHHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 665544 34555555667777777778888887776543221
Q ss_pred hhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccC-CcchHHHHH----HHHHHHHHHHHh
Q 006179 173 RFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN-DTSTSKYIS----ALEDELEKTRSS 247 (658)
Q Consensus 173 Q~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn-~tstskyi~----aLEeEle~lr~~ 247 (658)
-+.+ .+-.+--.||-||.-=...++.-+--.++ +-+-.--|.|. ++-|-|-+= -|.+|++.|-..
T Consensus 163 ~~ql-----R~~llDPAinl~F~rlK~ele~tk~Klee-----~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q 232 (330)
T KOG2991|consen 163 VAQL-----RSTLLDPAINLFFLRLKGELEQTKDKLEE-----AQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQ 232 (330)
T ss_pred HHHH-----HHHhhChHHHHHHHHHHHHHHHHHHHHHH-----HHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 1111 11122367777776555555541111111 11223348887 444555543 367777666332
Q ss_pred HHHHHhhhhh-hHHHHHHhHHhHH-HHHHhhhhhHHHH
Q 006179 248 VENLQSKLRM-GLEIENHLKKSVR-ELEKKIIHSDKFI 283 (658)
Q Consensus 248 i~~LQsklR~-GLeIenhLkk~vr-~Lekkqi~~dk~i 283 (658)
.+ +=|+ -|+||=-++|.-. +|-+.|--+++||
T Consensus 233 ~s----~Gria~Le~eLAmQKs~seElkssq~eL~dfm 266 (330)
T KOG2991|consen 233 AS----EGRIAELEIELAMQKSQSEELKSSQEELYDFM 266 (330)
T ss_pred hh----cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence 21 2222 2555555544433 3444444455554
No 39
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.97 E-value=9.7 Score=44.19 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=24.6
Q ss_pred hhhhHHHHHHhhhhcchhhhhhHHHHHh
Q 006179 294 HSQLRVHVVNSLEEGRSHIKSISDVIEE 321 (658)
Q Consensus 294 h~~~R~~Im~lL~ee~s~i~s~v~~iee 321 (658)
=..|+..|-++|.+....|+.+|+.|..
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999998864
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.80 E-value=49 Score=35.62 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=13.2
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHH
Q 006179 171 TLRFDLEKQEELNESFKEVINKFYE 195 (658)
Q Consensus 171 ~LQ~dl~~~~eq~e~~~kVI~KFye 195 (658)
.++.++...+.....+.+. .+||+
T Consensus 259 ~l~~~~~~~~~~l~~~~~~-~~~~~ 282 (562)
T PHA02562 259 KLNTAAAKIKSKIEQFQKV-IKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 3555666666666555444 44555
No 41
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.56 E-value=78 Score=36.73 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=116.1
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhch
Q 006179 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN 129 (658)
Q Consensus 50 TrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~ 129 (658)
+-|+.+=-..|++.-...-+++++|...|.+|.|-+.++--..+..+-| .-+-..+.-+|.=||..|-+
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~------- 284 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ------- 284 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence 3455555567888777788899999999999999999888887777655 22334478899999988765
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 006179 130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 209 (658)
Q Consensus 130 slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~ 209 (658)
|+ -+-..|-++++...+-+++-++.|+..+..|+.|+.-++.+ ++|..
T Consensus 285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~ 332 (581)
T KOG0995|consen 285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE 332 (581)
T ss_pred --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence 43 44556778888888888888888877777777665433332 23322
Q ss_pred ccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHH
Q 006179 210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNA 286 (658)
Q Consensus 210 ~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ng 286 (658)
+== . ...=-..|.++++.+...+|.|++++- +.+--.+.....+|++-+.+++.+++=
T Consensus 333 dve--------~--------mn~Er~~l~r~l~~i~~~~d~l~k~vw---~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 333 DVE--------R--------MNLERNKLKRELNKIQSELDRLSKEVW---ELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHH--------H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0 001123567777777777777777652 222223445667888888888887763
No 42
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.54 E-value=42 Score=35.67 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 10 ~~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
.+.|++.+|++-|.+|-.||..+++.+=-.+.+.. =..++ ...+.+.++.|+++|... .|.+=|.+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~------~~~l~~~~~~L~~~L~~l-----~l~~~lg~-- 152 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKIS------PEELAQQLEELSKQLDSL-----KLEELLGE-- 152 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCC------hhhHHHHHHHHHHHHHHh-----hcccccch--
Confidence 45799999999999999999999998643222111 00000 122345566666666655 11111111
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhh--hchhhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006179 90 RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE--RDNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 90 RiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaE--RD~slmEaEkaKE~Ee-~m~qk~~~~~~R~~E~~s~~ 162 (658)
.++.++..+.-.....+-.|+..|++..+++-.. -|...-|.-...+... .-+++++.|+.|+..+++.+
T Consensus 153 ---~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~l 225 (388)
T PF04912_consen 153 ---ETAQDLSDPQKALSKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESAL 225 (388)
T ss_pred ---hhhcccccchhhHHHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHh
Confidence 2333333344445556667777776433221111 1211122222222222 24689999999999988776
No 43
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.87 E-value=1.1e+02 Score=36.09 Aligned_cols=211 Identities=27% Similarity=0.319 Sum_probs=124.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchH----HHHHHHHHHHHHHHHH------HHHHHHhhHHHHHhHhHhhhhhHHHHhh
Q 006179 57 TAGLEQEIEILKQKIAACARENSNLQ----EELSEAYRIKGQLADL------HAAEVIKNMEAEKQVKFFQGCMAAAFAE 126 (658)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~ren~nLQ----eELsEAYRiK~qLadL------h~ae~~Kn~e~EkqvkFfQs~vA~AFaE 126 (658)
..-|.|||+.|-++|...+++-..-- +=|-|--.+|.|+++| -+-|+-+.+++=-|.+--+-.||..=-+
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e 89 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE 89 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 34456666666666665555533211 1123333455555533 4567777777777766667788888888
Q ss_pred hchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcc
Q 006179 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 206 (658)
Q Consensus 127 RD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~ 206 (658)
|.-||++---+| |+...+++.+++.-+. .+..+|+.-.+.++.+.+|..+|-+.-..+-.- -
T Consensus 90 ~EesLLqESaak--E~~yl~kI~eleneLK--------------q~r~el~~~q~E~erl~~~~sd~~e~~~~~E~q-R- 151 (772)
T KOG0999|consen 90 REESLLQESAAK--EEYYLQKILELENELK--------------QLRQELTNVQEENERLEKVHSDLKESNAAVEDQ-R- 151 (772)
T ss_pred hHHHHHHHHHHh--HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH-H-
Confidence 888988855555 5566677666654433 244567777788888888888886654322110 0
Q ss_pred cccccccccccccccccccCCcc-hHHHHHHHHHHHHHHHHhHHHHHhh-hhh-hHHHHHH--------hHHhHHHHHHh
Q 006179 207 SWEDKCACLLLDSAEMWSFNDTS-TSKYISALEDELEKTRSSVENLQSK-LRM-GLEIENH--------LKKSVRELEKK 275 (658)
Q Consensus 207 s~~~Kc~~LL~ds~~~Wsfn~ts-tskyi~aLEeEle~lr~~i~~LQsk-lR~-GLeIenh--------Lkk~vr~Lekk 275 (658)
.=|.|-.--+-|-.+- .|.| +-||||+=+|..+|++|.++ +-. ||-+|+. |.-.+.....-
T Consensus 152 -------~rlr~elKe~KfRE~RllseY-SELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~L 223 (772)
T KOG0999|consen 152 -------RRLRDELKEYKFREARLLSEY-SELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRL 223 (772)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111223444332 3444 67999999999999888554 222 6655543 33333344433
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 006179 276 IIHSDKFISNAIAELRLC 293 (658)
Q Consensus 276 qi~~dk~i~ngi~~lq~~ 293 (658)
..+.++-+..+|-.||.-
T Consensus 224 k~IAekQlEEALeTlq~E 241 (772)
T KOG0999|consen 224 KEIAEKQLEEALETLQQE 241 (772)
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 446777788888887754
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.72 E-value=99 Score=35.66 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 107 MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (658)
Q Consensus 107 ~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk 166 (658)
...++++-|...-.+.|-+-||+.+-|--.++=..+.+-.++++...-++|..++-...+
T Consensus 300 qaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 300 QASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788889999999999999999888777764444444555555555555554444333
No 45
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.07 E-value=1.4e+02 Score=35.17 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLad 97 (658)
.+..+..+...+..+-....+|.+.-.+....+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555544
No 46
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.62 E-value=94 Score=33.48 Aligned_cols=79 Identities=30% Similarity=0.429 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHH------HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH------FQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~------~qRta~LEQeiE~Lkkkl~~c~ren~nLQeEL 85 (658)
.+.|-.+++.||.|-..||...-+|=.--+ .| -=--+|+ -.++|+ +.|-.|..-|+.++.+|...|+|.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~-EekEqqLv~dcv~QL~~An--~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETD--TY-EEKEQQLVLDCVKQLSEAN--QQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hc-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999988888887766632111 00 0001111 112333 347888889999999999999998
Q ss_pred HHHHHHHHHHHHH
Q 006179 86 SEAYRIKGQLADL 98 (658)
Q Consensus 86 sEAYRiK~qLadL 98 (658)
+ ++-+|++||
T Consensus 237 t---~Llsqivdl 246 (306)
T PF04849_consen 237 T---SLLSQIVDL 246 (306)
T ss_pred H---HHHHHHHHH
Confidence 7 578899988
No 47
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.18 E-value=28 Score=29.42 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Q 006179 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~W 223 (658)
+..+|+.+..++..+.+.+...+..-..+..=+.. ...+..+.+|-..+.+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~e------------------------L~~l~~~~~~y~~vG~~---- 54 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEE------------------------LEKLDDDRKVYKSVGKM---- 54 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHTSSTT-EEEEEETTE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHhCCCcchhHHHHhHH----
Confidence 55778888888777766664443322221111111 13344444554444332
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 006179 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 224 sfn~tstskyi~aLEeEle~lr~~i~~LQsklR 256 (658)
|=-.+...++..|++..+.+...+++|..++.
T Consensus 55 -fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 55 -FVKQDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp -EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356788999999999999999998888765
No 48
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.85 E-value=73 Score=31.17 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeEL 85 (658)
..+...|.++..+++.|+..|+.+=....++.. ...+.+......++..++.++..+....++....++.+
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQL--LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999987653333311 11222222233334444444444444444444444433
No 49
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=77.32 E-value=1e+02 Score=32.56 Aligned_cols=100 Identities=28% Similarity=0.370 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHH
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE 139 (658)
++.++..++++......+..++|.|++.+--.|+.|-.|.+-=--.|+.+- |-+..-+..-.+
T Consensus 41 ~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk-----------------eE~~~~~~eee~ 103 (309)
T PF09728_consen 41 LQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK-----------------EESKRRAREEEE 103 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 677788889999999999999999999999999999988553333344332 122222333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006179 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (658)
Q Consensus 140 ~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~ 179 (658)
+-..++.+| +..+.+.+..|.++..-|..+-.+-..+
T Consensus 104 kR~el~~kF---q~~L~dIq~~~ee~~~~~~k~~~eN~~L 140 (309)
T PF09728_consen 104 KRKELSEKF---QATLKDIQAQMEEQSERNIKLREENEEL 140 (309)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 455555555 3444455555555555555444443333
No 50
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=76.75 E-value=1.5e+02 Score=34.34 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q 94 (658)
|+.=|+||+-|||+..--+ .-...+|-||.+.|-.++.+|++....-.+.=..|...|++ +|.|
T Consensus 2 l~e~l~qlq~Erd~ya~~l-------------k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e---Lk~q 65 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQL-------------KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE---LKNQ 65 (617)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 4566899999999854322 22345799999999999999999877777777777777777 6777
Q ss_pred HHHH
Q 006179 95 LADL 98 (658)
Q Consensus 95 LadL 98 (658)
++..
T Consensus 66 ~~~~ 69 (617)
T PF15070_consen 66 MAEP 69 (617)
T ss_pred hccc
Confidence 7744
No 51
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=75.59 E-value=6.3 Score=36.84 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=43.8
Q ss_pred HhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 113 vkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
++|-|+--+. -|||.+-||.|||. ++.|+-.|+.+..-|+.+|..|..-..+|+--+
T Consensus 6 l~fLQ~Ew~r--~ErdR~~WeiERaE------------mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 6 LHFLQTEWHR--FERDRNQWEIERAE------------MKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHH--HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665544 38999999999986 667888889999889988888877777775433
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.13 E-value=2.2e+02 Score=35.44 Aligned_cols=226 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH----HHHHH--HhhHHHHHhHhHhhhhhHHHHhhhchhhHH
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL----HAAEV--IKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL----h~ae~--~Kn~e~EkqvkFfQs~vA~AFaERD~slmE 133 (658)
|++||+.+++ .|-+=|++-++=|.+|.|.+.+-.++ ++||. .+-++.=-+.-||-+-|--+ ++||.++=
T Consensus 203 lr~eLddlea---e~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveel--kedN~vLl 277 (1195)
T KOG4643|consen 203 LRNELDDLEA---EISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEEL--KEDNRVLL 277 (1195)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHH--HhhhHHHH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccc
Q 006179 134 AEKAKEKEELMSQKFNEFQTRL--EELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 211 (658)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~--~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K 211 (658)
|--++|-.++..+..|- -+++|.+...|..-+.++++.....-||+.++.=+-+.--.- +-.+.+|+-
T Consensus 278 -----eekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~----eqL~~~~el- 347 (1195)
T KOG4643|consen 278 -----EEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQK----EQLDGQMEL- 347 (1195)
T ss_pred -----HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHhhhhhhH-
Q ss_pred ccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH----------------hHHhHHHHHH-
Q 006179 212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH----------------LKKSVRELEK- 274 (658)
Q Consensus 212 c~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenh----------------Lkk~vr~Lek- 274 (658)
..-+=.+=|-+.+++.-....|-+-=-+-++|||| +-.+.-.|+|
T Consensus 348 ------------------lq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke 409 (1195)
T KOG4643|consen 348 ------------------LQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKE 409 (1195)
T ss_pred ------------------hhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q ss_pred -hhh-hhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHH
Q 006179 275 -KII-HSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 318 (658)
Q Consensus 275 -kqi-~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ 318 (658)
|.+ +=.+.+.+.|-.+...-...++.--+++.|-..-...+-+.
T Consensus 410 ~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 410 HKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.06 E-value=44 Score=33.54 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=18.9
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhh
Q 006179 50 TRMHFQRTAGLEQEIEILKQKIAACA 75 (658)
Q Consensus 50 TrM~~qRta~LEQeiE~Lkkkl~~c~ 75 (658)
|.-...|...||++++.|+.+|....
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778888888888888777644
No 54
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.57 E-value=14 Score=37.33 Aligned_cols=71 Identities=31% Similarity=0.404 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC-CchHhhhhhHHHHhhhhhHH---HHHHHHHHHHHhhhhhcc
Q 006179 12 SEALMARIQQLEH-------ERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQ---EIEILKQKIAACARENSN 80 (658)
Q Consensus 12 ~e~l~~rI~qLe~-------ERdEL~KDIEqLCMQQaG-pgyl~vATrM~~qRta~LEQ---eiE~Lkkkl~~c~ren~n 80 (658)
+-+|.+.|.-|+. |+|.|.|++++||+.-++ ++-|-+.++...||-+-+.. .|+.|++-+..|+.=+.-
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4456666665554 899999999999999888 88888889999999888753 466666655555544443
Q ss_pred hH
Q 006179 81 LQ 82 (658)
Q Consensus 81 LQ 82 (658)
|.
T Consensus 177 LR 178 (193)
T PF14662_consen 177 LR 178 (193)
T ss_pred HH
Confidence 33
No 55
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.59 E-value=1e+02 Score=37.89 Aligned_cols=166 Identities=20% Similarity=0.151 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH-HH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA-YR 90 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA-YR 90 (658)
...=++.|++|+.+-|.|.||+|.+|-=+.=-+||.+ |.+--- +=.+++ -.+-+.++-.| =|
T Consensus 197 ~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~----l~~k~~-----~v~y~~--------~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 197 LTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIEL----LEKKKK-----WVEYKK--------HDREYNAYKQAKDR 259 (1072)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcc-----ccchHh--------hhHHHHHHHHHHHH
Confidence 3444677889999999999999999976665666432 211100 001111 01112222223 36
Q ss_pred HHHHHHHHHH---HHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 91 IKGQLADLHA---AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 91 iK~qLadLh~---ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
.|.++-+|-. .=..+-+++|+ -++-.++.=+..-+++-++..+--...-+|.+++.++.+...++...|.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELES-------EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776633 22345566776 3456666667777888888888888888888888888888777776665
Q ss_pred hhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccc
Q 006179 168 QNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW 208 (658)
Q Consensus 168 ~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~ 208 (658)
.-...|.++... .|.|.--=..++....|.+..+
T Consensus 333 ~~~~rq~~i~~~-------~k~i~~~q~el~~~~~~e~~~~ 366 (1072)
T KOG0979|consen 333 AAEKRQKRIEKA-------KKMILDAQAELQETEDPENPVE 366 (1072)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHhhhhhcCCccccch
Confidence 555555544433 4555444444454445544433
No 56
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.36 E-value=1.4e+02 Score=31.92 Aligned_cols=146 Identities=21% Similarity=0.259 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCC-chHhhhhhH-----HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 006179 13 EALMARIQQLEHERDELRK-DIEQLCMQQAGP-SYLAVATRM-----HFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~K-DIEqLCMQQaGp-gyl~vATrM-----~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeEL 85 (658)
|+=.=|.++||+..-|+-- -=-..|++.+-+ ++++.+|.. -++|..+ +. ...-+..+.-.+
T Consensus 14 EAR~iRmreLErqqkE~ee~~Dr~~~~~~Sr~~s~ls~~t~~S~~~sSSRRsS~---Dt--------SsS~dse~s~r~- 81 (302)
T PF09738_consen 14 EAREIRMRELERQQKEQEENSDRRYDSSSSRRHSDLSQWTLNSLRGSSSRRSSG---DT--------SSSVDSEASLRD- 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccCccCCccchhhhcCCCCCCCCCCCC---cc--------cccccccccHHH-
Confidence 3334477889887777321 112348876643 466666522 2333321 00 000001111112
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhHHH--HHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 86 SEAYRIKGQLADL---HAAEVIKNMEA--EKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSS 160 (658)
Q Consensus 86 sEAYRiK~qLadL---h~ae~~Kn~e~--EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s 160 (658)
+|..|+++ |+.+..-|-+| ||.--- -++.-.|-+=+.|-..+++++.-.++-..
T Consensus 82 -----lk~~l~evEekyrkAMv~naQLDNek~~l~----------------yqvd~Lkd~lee~eE~~~~~~re~~eK~~ 140 (302)
T PF09738_consen 82 -----LKDSLAEVEEKYRKAMVSNAQLDNEKSALM----------------YQVDLLKDKLEELEETLAQLQREYREKIR 140 (302)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhhchHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26666655 56666666555 333333 34555555555555666666666677778
Q ss_pred HHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 161 ENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 161 ~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
++..||+..+.|+.++..++++..---..|.
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999876555554
No 57
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.99 E-value=70 Score=28.20 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchh
Q 006179 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130 (658)
Q Consensus 63 eiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~s 130 (658)
.++.|++++..+...-.-|.-++.|+.++..-|..| +..-+.| -.|..+|-++|..
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l-----------~~d~~vy-~~VG~vfv~~~~~ 62 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL-----------ADDAEVY-KLVGNVLVKQEKE 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchHH-HHhhhHHhhccHH
Confidence 367777788888877778888888888887777655 2344445 4678888888764
No 58
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=71.82 E-value=56 Score=27.04 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~ 93 (658)
....++..|+..++++...+...| + | .-....+++-.=...|++.|..++..+..+-.+=...++.|.+|++=..
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~-~--~--~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQ-Q--G--VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT------S--G--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-C--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444 2 2 2123345555667789999999999999999999999999999998777
Q ss_pred HHHHH
Q 006179 94 QLADL 98 (658)
Q Consensus 94 qLadL 98 (658)
.+..|
T Consensus 91 ~~e~L 95 (123)
T PF02050_consen 91 KLEKL 95 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 59
>PF13514 AAA_27: AAA domain
Probab=71.57 E-value=2.4e+02 Score=34.17 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQ 39 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQ 39 (658)
...+..||.+++.+.+.+...+..|+-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888853
No 60
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=71.28 E-value=1.8e+02 Score=32.62 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHh--hhhhHHHHhhhhhHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLA--VATRMHFQRTAGLEQEI 64 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~--vATrM~~qRta~LEQei 64 (658)
.|.+..+|..|.++.++++..|-..---..+ .|.. ..++-+..|...|..||
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYS-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 6788999999999999999998766554433 2222 12233445566666666
No 61
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=71.06 E-value=96 Score=29.40 Aligned_cols=37 Identities=35% Similarity=0.303 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
+-+|...+|++|..|++|+...-.+=..+++.|.++.
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777766666555556666666554
No 62
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.01 E-value=18 Score=31.63 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCCch--H-------------hhhhhHHHHhhhhhHHHHHHHHHHHHHhhh
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQ---QAGPSY--L-------------AVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQ---QaGpgy--l-------------~vATrM~~qRta~LEQeiE~Lkkkl~~c~r 76 (658)
.....+.+.+|-..|++.++.|... --|++. + ....|+-++.+.-|..+|++|++|...+..
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777664 345432 2 235678888888999999999999999999
Q ss_pred hhcchHHHHHH
Q 006179 77 ENSNLQEELSE 87 (658)
Q Consensus 77 en~nLQeELsE 87 (658)
+|..|+..+.|
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.79 E-value=1.9e+02 Score=32.62 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHH
Q 006179 59 GLEQEIEILKQKIAACARE--NSNLQEELSEAYRIKGQLADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (658)
Q Consensus 59 ~LEQeiE~Lkkkl~~c~re--n~nLQeELsEAYRiK~qLadLh---~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE 133 (658)
+++.+|+.+++++..|... +..|..--..-=.|..++..|| ..|..-.+.+++...-+...+..+=..=+.-.-|
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655554321 1222222222233444444443 3565555666665555555554443333333333
Q ss_pred HHHhH
Q 006179 134 AEKAK 138 (658)
Q Consensus 134 aEkaK 138 (658)
.+..+
T Consensus 333 i~~l~ 337 (569)
T PRK04778 333 IDRVK 337 (569)
T ss_pred HHHHH
Confidence 33333
No 64
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.40 E-value=45 Score=34.33 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
+.+|=.-|..|..||+.++..++.....||.++..++.-|-
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999998
No 65
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=70.27 E-value=95 Score=31.97 Aligned_cols=46 Identities=33% Similarity=0.510 Sum_probs=32.5
Q ss_pred hhHHHHhhhchhhH-HH--HHh----HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 006179 119 CMAAAFAERDNSVM-EA--EKA----KEKEELMS--QKFNEFQTRLEELSSENIE 164 (658)
Q Consensus 119 ~vA~AFaERD~slm-Ea--Eka----KE~Ee~m~--qk~~~~~~R~~E~~s~~~~ 164 (658)
-.|+|-|+||+.++ +. ++. |+.|+... .++.+.+.|++.|.+.+.+
T Consensus 100 Aaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~E 154 (205)
T PF12240_consen 100 AAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAE 154 (205)
T ss_pred HHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44888899999554 33 333 44666655 4678999999999888854
No 66
>PRK11281 hypothetical protein; Provisional
Probab=69.98 E-value=2.9e+02 Score=34.44 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhcCCchHhhhhhHHH--HhhhhhHHH---------------HHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLC----MQQAGPSYLAVATRMHF--QRTAGLEQE---------------IEILKQKIA 72 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLC----MQQaGpgyl~vATrM~~--qRta~LEQe---------------iE~Lkkkl~ 72 (658)
.|.+++.+++.+..+.++|..++= -||.-|-. +-|||-. +|...+.+. ...|+..+.
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PER--AQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER--AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 388888888888888888887663 34444554 3333322 222222211 222344444
Q ss_pred HhhhhhcchHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHH---HHhhhchhhHHHHH-------
Q 006179 73 ACARENSNLQEELS------EAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA---AFAERDNSVMEAEK------- 136 (658)
Q Consensus 73 ~c~ren~nLQeELs------EAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~---AFaERD~slmEaEk------- 136 (658)
+...+|.-++.||. +-|+.+..+... +-.++|+++.+.|..+.. .-+|- .+-|++.
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~------~~~~~~~~~~~lq~~in~kr~~~se~--~~~~a~~~~~~~~~ 274 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTA------RIQRLEHQLQLLQEAINSKRLTLSEK--TVQEAQSQDEAARI 274 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhccc
Confidence 45555555555543 223333332222 334567777777766554 22221 2222211
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006179 137 --------AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (658)
Q Consensus 137 --------aKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~ 185 (658)
.-+.-..+++.+.+.-+|+..+..+...-|..=+.+.-.+..++||.+.
T Consensus 275 ~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 275 QANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133445677777777777777777777777777777777777777664
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.66 E-value=2.9e+02 Score=34.68 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 006179 1 MDENSKEKENESEALMARIQQLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (658)
Q Consensus 1 ~~~~~~e~~~~~e~l~~rI~qLe~ERdEL~KDIEqLCM-QQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (658)
+.+.+...-.....-+....+++.+.++|.+-++.|=- ...--.|..+..|...+..-.-..+++.++.++..+..+-.
T Consensus 214 l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 214 LPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHH-----------HHHHHHHH-----HHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHH
Q 006179 80 NLQEELSEAYR-----------IKGQLADL-----HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (658)
Q Consensus 80 nLQeELsEAYR-----------iK~qLadL-----h~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~ 143 (658)
..++++.++=. ++..+..| |+..-.-. +++.|++.++...+.++.. ++++..+.+.
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~-el~~ql~~~~~~a~~~~~~-------~~~a~~~~e~ 365 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELE-RARADAEALQAAAADARQA-------IREAESRLEE 365 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006179 144 MSQKFNEFQTRLEELSSENIEL 165 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~q 165 (658)
.-++..+.+.|+.+..+.+...
T Consensus 366 ~~~~~~~~~~r~~~~~~~l~~~ 387 (1353)
T TIGR02680 366 ERRRLDEEAGRLDDAERELRAA 387 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.04 E-value=1.6e+02 Score=35.29 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=43.6
Q ss_pred hHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 006179 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (658)
Q Consensus 120 vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~e 181 (658)
+..++.+|++.|+|..+.|-.-+ +.|..+..|++-.++.+.-.|+-=..|+-+|+.+.+
T Consensus 111 l~~~l~~~~~~i~~l~~~~~~~e---~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 111 LSKALQEKEKLIAELSEEKSQAE---AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888877775554 677888888888888887777776677777765543
No 69
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.92 E-value=3e+02 Score=34.26 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
..+..-+|++|+.|-+.+++-|.++=++.. |..-.+ +.|-.+.+.|+++|.--..+=..+++|+.+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~---~~~~~~-------~~l~~~~~~~k~~L~~~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYM---NQLEIK-------ELLKEEKEKLKSKLQNKNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777766551 111111 233334555555544444444445555444
No 70
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.03 E-value=1.5e+02 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=21.2
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 006179 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (658)
Q Consensus 50 TrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELs 86 (658)
...+.++.+.+....+.++.++.....+-..++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~ 161 (423)
T TIGR01843 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELA 161 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655554444544444
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.51 E-value=3.5e+02 Score=34.44 Aligned_cols=286 Identities=21% Similarity=0.236 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHhhhhhHHHHhh---hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRT---AGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCM-QQaGpgyl~vATrM~~qRt---a~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
.|..-|.++.-++.+|++ +|.-. |+. ...+++++.+=. ..|+-++..++..|....+.|.|++.++...-
T Consensus 469 eL~e~i~~lk~~~~el~~--~q~~l~q~~----~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~ 542 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQR--EQKALLQHE----QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN 542 (1317)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344445555566667764 22211 111 234555555422 24455566666666666777777766666665
Q ss_pred HHHHHHH---HH-------------HHHHHHhhHHHHHh--------HhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHH
Q 006179 90 RIKGQLA---DL-------------HAAEVIKNMEAEKQ--------VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS 145 (658)
Q Consensus 90 RiK~qLa---dL-------------h~ae~~Kn~e~Ekq--------vkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~ 145 (658)
-.+.+|. +. |.+++++-++-+.. ..--|.+--.---++-.-..++|+.++..-..+
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~ 622 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEIS 622 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 11 33333333322211 111111111111112222334455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHhhHHHhhhHHH--HHHhhHhHHHHHHHHHHHhhhhhhhhccccccc-c
Q 006179 146 QKFNEFQTRLEELSSENIE----------LKKQNATLRFDLEK--QEELNESFKEVINKFYEIRQQSLEVLETSWEDK-C 212 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~----------qk~~n~~LQ~dl~~--~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~K-c 212 (658)
-.+.+++.++..+++..+. .++.|..-..+.++ ++.+.+--++++..+++ +-..+|.-+-...+ |
T Consensus 623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~e--q~~~E~~~~~L~~~e~ 700 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELE--QENAEHHRLRLQDKEA 700 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHH
Confidence 5555555555555554322 22222222233333 44455544555555443 22223311111111 1
Q ss_pred cccccccccccccCCcchHHHHHH----HHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh----hhhHHHHH
Q 006179 213 ACLLLDSAEMWSFNDTSTSKYISA----LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI----IHSDKFIS 284 (658)
Q Consensus 213 ~~LL~ds~~~Wsfn~tstskyi~a----LEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkq----i~~dk~i~ 284 (658)
.+ -...+|--.+-++--|..+ ++.+++.|++.. +|++ +=.|||.++.+.+...- ..++.+|.
T Consensus 701 ~~---~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~--~~~~-----~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~ 770 (1317)
T KOG0612|consen 701 QM---KEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY--KQSQ-----EKLNELRRSKDQLITEVLKLQSMLEQEIS 770 (1317)
T ss_pred HH---HHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh--hhhc-----cchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234465556666666666 666777776533 3333 45577766555544433 24455555
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHHH
Q 006179 285 NAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIE 320 (658)
Q Consensus 285 ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ie 320 (658)
..++ ++..|+ .|+.-.+. +.-.-+.++.++.+.
T Consensus 771 ~r~~-~~~eLs-sq~~~~~t-~~~Ekq~~~~~~~l~ 803 (1317)
T KOG0612|consen 771 KRLS-LQRELK-SQEQEVNT-KMLEKQLKKLLDELA 803 (1317)
T ss_pred Hhhh-hHHHhh-hHHHhhcc-HHHHHHHHHHHHHHH
Confidence 4443 344444 33333333 333444445554444
No 72
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.67 E-value=3.4e+02 Score=33.97 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=99.0
Q ss_pred HHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006179 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (658)
Q Consensus 101 ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~ 180 (658)
....++.++.+...=++-.++..-.|=|.-=-|++-+++.=......+++++.-..+.++.+.+.|.--+.|...++.++
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677777777666555556666677666777777888888888888888777777777777777777
Q ss_pred HhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHH
Q 006179 181 ELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLE 260 (658)
Q Consensus 181 eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLe 260 (658)
+|+.-..+. =- ..-++|-. ...+-|..||+++.+|+.+...++++++.+=+
T Consensus 386 ~~~~~~~~~---~~-----------~e~e~k~~---------------~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 386 KQTNNELGS---EL-----------EERENKLE---------------QLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHhhhhh---hH-----------HHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 776211110 00 00111111 15678899999999999999999999999755
Q ss_pred HHHHhHHhHHHHHHhh
Q 006179 261 IENHLKKSVRELEKKI 276 (658)
Q Consensus 261 IenhLkk~vr~Lekkq 276 (658)
=--|++...+.|.|++
T Consensus 437 e~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666665
No 73
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.66 E-value=47 Score=27.42 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhh----HHHHhhhhhHHHHHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATR----MHFQRTAGLEQEIEILKQKIA 72 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATr----M~~qRta~LEQeiE~Lkkkl~ 72 (658)
+.+-|.-|+++.+.+.++|+.+=--=+-|||++=|.. -...+-+.++.+++.|...|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999888888999886653 234455666666666666554
No 74
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=66.56 E-value=31 Score=30.54 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=39.7
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006179 409 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEE 463 (658)
Q Consensus 409 lE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~ 463 (658)
+++.-+..|...|.+||.-|.-..+.=-.+=.|-.+|+++-+.|++|+++.|...
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456666778888887765544333334678899999999999999888664
No 75
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.20 E-value=93 Score=32.15 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccc----
Q 006179 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWS---- 224 (658)
Q Consensus 149 ~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Ws---- 224 (658)
+++++.+.++++.+.+++++|.+|-.||+....... ...... .+.+.-.-.+-.+.++...-+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~-----------~~~~~~--~~~s~~~~~~~~~~~~~~~g~~sp~ 68 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSS-----------ASRSFN--DGASMASGATRQIPNSGRSGSLSPT 68 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------cccCCC--CcccccccchhhccCccccCCCCCC
Confidence 578899999999999999999999999998754322 000000 000000000000111100000
Q ss_pred ---cCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhh
Q 006179 225 ---FNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII 277 (658)
Q Consensus 225 ---fn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi 277 (658)
.+|+.-+..+.-+-.+-|..|.....|...+|--..--+.|+..+..|.+-.+
T Consensus 69 ss~~~~~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 69 SSIIGGGGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122334455555666777777777777777665555556666666666554
No 76
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.12 E-value=1.8e+02 Score=30.33 Aligned_cols=178 Identities=19% Similarity=0.295 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccc
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsf 225 (658)
..+..+..++.+++-.+++.+.+-.+++.++....++....-+ | +
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~----------------------k----------l--- 82 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE----------------------K----------L--- 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H----------H---
Confidence 4455556666666666666666667777777766665541100 0 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHh-------HHHHHHhhhhhHHHHHHHHHHHH---Hhhh
Q 006179 226 NDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS-------VRELEKKIIHSDKFISNAIAELR---LCHS 295 (658)
Q Consensus 226 n~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~-------vr~Lekkqi~~dk~i~ngi~~lq---~~h~ 295 (658)
.+.++.+-.+||+.|.++++..+..|-..|.=-.+...+|.+. +..+|+...-+-.-+...+..+. +-|.
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~ 162 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS 162 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234677788888888877777777777776555555555443 34444444444444555555553 4667
Q ss_pred hhHHHHHHhhhhcchhhhhhHHHHHhhhccccccccccccCCCccccccccccccceeec-cCCCCccccCCCCCCcchh
Q 006179 296 QLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHIN-NDADTNLVSQRNDPAYCDI 374 (658)
Q Consensus 296 ~~R~~Im~lL~ee~s~i~s~v~~ieekl~~~~n~~~E~n~~~pq~e~~~~e~ec~dVhv~-~d~~p~~~~k~~~ps~~~~ 374 (658)
.+|+++..=|..+ ++-.++.-..-.-+ .+..|+...-|.--||- |+..-+.+.+.|.+..|..
T Consensus 163 ~~~~~L~~~l~~e------ll~~yeri~~~~kg----------~gvvpl~g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~ 226 (239)
T COG1579 163 SKREELKEKLDPE------LLSEYERIRKNKKG----------VGVVPLEGRVCGGCHMKLPSQTLSKVRKKDEIVFCPY 226 (239)
T ss_pred HHHHHHHHhcCHH------HHHHHHHHHhcCCC----------ceEEeecCCcccCCeeeecHHHHHHHhcCCCCccCCc
Confidence 7777766554432 12222222222112 34455666778888874 3444455666666666654
No 77
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=64.64 E-value=34 Score=28.90 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHh----hhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 006179 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl~----vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (658)
...+..+|.+|+++.+++.-=++.| |+..-|+-||- -+.-++-.+...++.+|+.|++++..+...=.
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666665444443 78888888863 45667778888888888888887776665554
Q ss_pred chHHHH
Q 006179 80 NLQEEL 85 (658)
Q Consensus 80 nLQeEL 85 (658)
+++..|
T Consensus 94 ~~~~~l 99 (106)
T PF01920_consen 94 ELKKKL 99 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 78
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=64.39 E-value=1.5e+02 Score=29.04 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~ 201 (658)
++...|..-..+|+.. .-+.......+..+....+|+.|.+..+++.
T Consensus 97 ~~~~~~~~k~~~~~~~---------~~~~~~e~~~~~~~~i~~ai~~~a~~~gy~~ 143 (170)
T COG2825 97 KLVNAFNKKQQEYEKD---------LNRREAEEEQKLLEKIQRAIESVAEKGGYSL 143 (170)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 3445555544444333 2334455556666777788998888877554
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.30 E-value=3.9e+02 Score=33.54 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhh
Q 006179 12 SEALMARIQQLE---HERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (658)
Q Consensus 12 ~e~l~~rI~qLe---~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~r 76 (658)
.+.+...|+.|- .+-..-++|++.+=-|=++-- -.++-..-|.|+++...-+|+.|.+
T Consensus 669 ~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le-------~~~~kf~~l~~ql~l~~~~l~l~~~ 729 (1174)
T KOG0933|consen 669 GADLLRQLQKLKQAQKELRAIQKELEALERELKSLE-------AQSQKFRDLKQQLELKLHELALLEK 729 (1174)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555443 344455677777666554421 1234555688888888888888754
No 80
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=62.48 E-value=35 Score=29.65 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=44.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhHHHHHhhhh---------hhHHHHHHhHHhHHHHHHhhhhh
Q 006179 227 DTSTSKYISALEDELEKTRSSVENLQSKLR---------MGLEIENHLKKSVRELEKKIIHS 279 (658)
Q Consensus 227 ~tstskyi~aLEeEle~lr~~i~~LQsklR---------~GLeIenhLkk~vr~Lekkqi~~ 279 (658)
+.+.+..|.+||.|++-++-....||..++ ..-.+++||.+-|..||.|--.+
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999998876664 35789999999999999986543
No 81
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.12 E-value=91 Score=29.65 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=63.4
Q ss_pred ccccCC------cchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh---hhhHHHHHHHHHHHHH
Q 006179 222 MWSFND------TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI---IHSDKFISNAIAELRL 292 (658)
Q Consensus 222 ~Wsfn~------tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkq---i~~dk~i~ngi~~lq~ 292 (658)
-|||.| -|.++.++++-.+|+.+-.+|..-. .||..|+..|..|+ .-..+.|.+.+++++.
T Consensus 27 Gws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tK----------khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 27 GWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTK----------KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 488886 3678888888888887777666543 57777777777766 3567788888999988
Q ss_pred hhhhhHHHHHHhhhhcchhhhhhHHHHHhhh-cc
Q 006179 293 CHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QH 325 (658)
Q Consensus 293 ~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~ 325 (658)
.=++-+..|-+ +..+|-.++.|| .+
T Consensus 97 dv~~i~~dv~~--------v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 97 DVSQIGDDVDS--------VQQMVEGLEGKIDEI 122 (126)
T ss_pred hHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 88777776654 567777777777 55
No 82
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.03 E-value=3.8e+02 Score=33.02 Aligned_cols=316 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchHhhhhhHH-------HHhhhhhHHHHHHHHHHHHHhhh
Q 006179 6 KEKENESEALMARIQQLEHERDELRKDIEQLCMQQAG--PSYLAVATRMH-------FQRTAGLEQEIEILKQKIAACAR 76 (658)
Q Consensus 6 ~e~~~~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG--pgyl~vATrM~-------~qRta~LEQeiE~Lkkkl~~c~r 76 (658)
..+....+....|..+++++...+...+.++=-++.- ...-.-...-. -...+.+...|+.++..+..-..
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~ 746 (1201)
T PF12128_consen 667 QLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQ 746 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcchHHHHHHHH---------------HHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHH
Q 006179 77 ENSNLQEELSEAY---------------RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKE 141 (658)
Q Consensus 77 en~nLQeELsEAY---------------RiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~E 141 (658)
+-..-..+|-.+| .++.+++.| ..++..-.+-+..|.=|+.-+..-|..+|.-.-+.-..++..
T Consensus 747 ~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L-~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~ 825 (1201)
T PF12128_consen 747 EAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQL-EKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQL 825 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccccccccccccccc
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSWEDKCACLLLDSA 220 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~-~~~s~~~Kc~~LL~ds~ 220 (658)
...-+++.+++.++..+.+........-..-...+..+..+.+.+++-+..++.--.....- ...++...+.-++.+
T Consensus 826 ~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 903 (1201)
T PF12128_consen 826 RDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAEGSVDERLRD-- 903 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHHHHH--
Q ss_pred cccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh--hhhHHHHHHhHHh--------------------HHHHHHhhhh
Q 006179 221 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL--RMGLEIENHLKKS--------------------VRELEKKIIH 278 (658)
Q Consensus 221 ~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl--R~GLeIenhLkk~--------------------vr~Lekkqi~ 278 (658)
+..+...+....+.++..+..+.+.+ -.|-.+.....+. +..|+.-.-.
T Consensus 904 ---------~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 974 (1201)
T PF12128_consen 904 ---------LEDLLQRRKRLREELKKAVERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDV 974 (1201)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHHHhhh--cccccccccc
Q 006179 279 SDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT--QHCDDVIRGQ 333 (658)
Q Consensus 279 ~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl--~~~~n~~~E~ 333 (658)
+-.-....|.+.-..++..=.....-|.+=..-|++++..|-+.+ ...+..|.++
T Consensus 975 ~~~~~~~~l~e~~~~~~~~i~~f~~~l~~~~r~I~~~s~~l~~~v~~~~~~~~i~~i 1031 (1201)
T PF12128_consen 975 LIPQQQQALIEQGRNIGNDISNFYGVLEDFDRRIKSQSRRLSREVSEDLFFEAISDI 1031 (1201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccee
No 83
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.33 E-value=1e+02 Score=32.51 Aligned_cols=45 Identities=33% Similarity=0.367 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH
Q 006179 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177 (658)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~ 177 (658)
|.++.++.|+.....++.|+..+.+.+......+.+-+..+..+.
T Consensus 86 e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666677777888887777666555444433333333333
No 84
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.78 E-value=2.5e+02 Score=33.50 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=22.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
+.+|.+.|+.|+-.++..+..+..||..|.....+.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~ 67 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQEL 67 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665554443
No 85
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.44 E-value=1.5e+02 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=12.4
Q ss_pred HHHHHHHHhhHHHhhhHHHHHHhhHhHH
Q 006179 160 SENIELKKQNATLRFDLEKQEELNESFK 187 (658)
Q Consensus 160 s~~~~qk~~n~~LQ~dl~~~~eq~e~~~ 187 (658)
..+..+...-..++.++..+.++.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555554444333
No 86
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.16 E-value=2.9e+02 Score=35.26 Aligned_cols=131 Identities=24% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE 133 (658)
.||.+.|+.-.|.||.|...-.++-.+.++. ||..|.+--+.-+.--..-...|+--+..+..+-.-.+-| --
T Consensus 1618 ~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~---a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar----~r 1690 (1758)
T KOG0994|consen 1618 TQQLGELETRMEELKHKAAQNSAEAKQAEKT---AGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAAR----ER 1690 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH----HH
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
||+.+++.+..+++-+.-..|+.+++-..++-.+.-..++.+|+.|+...++.++-|+
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
No 87
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=60.01 E-value=25 Score=31.35 Aligned_cols=64 Identities=28% Similarity=0.363 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 10 ~~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
...|.|+..++....||||||+=.-- ..+|. ..-| +--+.|.||-+=...-.+.++|+.+.++|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~~-----~~~~~--~n~R--------~n~~ye~Lk~q~~~vM~dl~~l~~~~~ea 82 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILAL-----YTEGS--LNNR--------PNPEYEMLKSQHEEVMSDLHKLEMEITEA 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCC--cccC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999963221 22343 3334 66678889888888899999999999987
No 88
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=59.84 E-value=7.7 Score=40.01 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=21.4
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHH
Q 006179 223 WSFNDTSTSKYISALEDELEKTRSSVENL 251 (658)
Q Consensus 223 Wsfn~tstskyi~aLEeEle~lr~~i~~L 251 (658)
+.-|.+ -.+=|+|||.||-.||++|+++
T Consensus 114 ~~~~~~-AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 114 LPANEA-ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred cCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 3356899999999999999986
No 89
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.60 E-value=3.6e+02 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRMG 258 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~G 258 (658)
+..-|-.||.|.+.|+.++.+--+..+.|
T Consensus 247 aq~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 56788999999999999998887777776
No 90
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.35 E-value=4.5e+02 Score=32.92 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhh
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACA 75 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ 75 (658)
.+.+...|.+...+-.++++.++. ..+..|.|..-.+. ..|||.+......|...-
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~--~~~~~~~~~~~~s~------~~Leq~l~~~~~~L~~~q 122 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNN--ERDEPRSVPPNMST------DALEQEILQVSSQLLEKS 122 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh--hhcccccccccCCH------HHHHHHHHHHHHHHHHHH
Confidence 455666666666777888888886 45555666433322 455665555444444433
No 91
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=58.76 E-value=3.2 Score=48.57 Aligned_cols=156 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q 94 (658)
+......|+.|.++|.+.++..=.| ++.++|- -..|++.++.++.+|...++...+|+..|..+=.=...
T Consensus 206 l~~~k~kL~~E~~eL~~qLee~e~~------~~~l~r~----k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~ 275 (859)
T PF01576_consen 206 LTEQKAKLQSENSELTRQLEEAESQ------LSQLQRE----KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQ 275 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHH
Confidence 3344444555666666655554433 2233332 34588889999999999999999998887765432222
Q ss_pred HHHHHHHHHHhhHH-------HHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 95 LADLHAAEVIKNME-------AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 95 LadLh~ae~~Kn~e-------~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
|-+.+--+-..-.+ +..++.|++..+-+.+..|-..+-|+- .-+..++.+.+..++++...+...++
T Consensus 276 L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK------KkL~~~L~el~e~le~~~~~~~~LeK 349 (859)
T PF01576_consen 276 LREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK------KKLERKLQELQEQLEEANAKVSSLEK 349 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233 444566666666666665554444332 34567899999999999999999999
Q ss_pred hhHHHhhhHHHHHHhhHhH
Q 006179 168 QNATLRFDLEKQEELNESF 186 (658)
Q Consensus 168 ~n~~LQ~dl~~~~eq~e~~ 186 (658)
....|+.++..+.-..+..
T Consensus 350 ~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 350 TKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988877666643
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.44 E-value=3.3e+02 Score=31.20 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=32.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
+.+-++.+++.+.++++++++|+..+...-.+.. .||++.+..++.-+
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~----~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAGEQQVDLD----ALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHH----HHHHHHHHHHHHHH
Confidence 4567778888899999999999887755443333 45555555555544
No 93
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.90 E-value=1.4e+02 Score=26.67 Aligned_cols=95 Identities=20% Similarity=0.333 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHH
Q 006179 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEE 142 (658)
Q Consensus 63 eiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee 142 (658)
..+.++.++..+...-..|.-++.|+-.+..-|..| ....+.|- .|...|-++|..=+
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-----------~~d~~vyk-~VG~vlv~~~~~e~---------- 68 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-----------PDDTPVYK-SVGNLLVKTDKEEA---------- 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhchhhheecHHHH----------
Confidence 356667777777777778888888888888777766 23445554 46778888775422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
...++.|++.++..+......-..|+..+..+..+..
T Consensus 69 -----~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 69 -----IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555554444444555555555444433
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.14 E-value=2.1e+02 Score=28.48 Aligned_cols=101 Identities=25% Similarity=0.322 Sum_probs=62.4
Q ss_pred HHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006179 103 VIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (658)
Q Consensus 103 ~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq 182 (658)
...+.++.++++||+. |+ +.+..+..|+..++..+.+.+.-+..|...+..+...
T Consensus 68 ~~e~~eL~k~L~~y~k---------dK----------------~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEK---------DK----------------QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHH---------HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888754 22 3456667777777777777777777777777777666
Q ss_pred hHhHH-HHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHH
Q 006179 183 NESFK-EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENL 251 (658)
Q Consensus 183 ~e~~~-kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~L 251 (658)
-+-+. +.-..+|+|.+.... -++- ..+=+.+|.+.++.-.+++...
T Consensus 123 rdeL~~kf~~~i~evqQk~~~-kn~l----------------------LEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 123 RDELYRKFESAIQEVQQKTGL-KNLL----------------------LEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 444555666664332 1111 2344666666666666666543
No 95
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=57.01 E-value=1.9e+02 Score=30.88 Aligned_cols=192 Identities=18% Similarity=0.197 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~ 93 (658)
-++.|.+.|+.|.+..+|.-..+.-= -|.+|-...+=++||. +..|+.-|+.+-..|..|.+.|-..=..=.
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii~~--n~~VL~~lgkeelqkl------~~eLe~vLs~~q~KnekLke~LerEq~wL~ 127 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEIIPL--NPEVLLTLGKEELQKL------ISELEMVLSTVQSKNEKLKEDLEREQQWLD 127 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCC--CHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776666654443311 1555555555555553 334445555566666777776653322222
Q ss_pred HHHHHHHHHHHhhHHHHHhH-hHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 006179 94 QLADLHAAEVIKNMEAEKQV-KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRL---EELSSENIELKKQN 169 (658)
Q Consensus 94 qLadLh~ae~~Kn~e~Ekqv-kFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~---~E~~s~~~~qk~~n 169 (658)
+--.++.+--..-.++..++ .|.-+.|.+++-.+ -.++|+..+.+...+-+|-.-- -.-+....+-|+-.
T Consensus 128 Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K------~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~ 201 (268)
T PF11802_consen 128 EQQQLLESLNKRHEELKNQVETFSESRVFQELKTK------IEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGE 201 (268)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccc
Confidence 22234444444555666555 56666666666654 4455666666666666664321 11111122222222
Q ss_pred HHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hccc------ccccccccccccccc
Q 006179 170 ATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETS------WEDKCACLLLDSAEM 222 (658)
Q Consensus 170 ~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~-~~~s------~~~Kc~~LL~ds~~~ 222 (658)
+.--.++..+.+-+| ..||+.++.-.-.-.- .+.. +.-.|+|-+.+|.|.
T Consensus 202 ~e~~~~~~~l~eilE---~LmN~l~~~p~DpYv~i~~~~WPpyie~LlR~GIa~rHP~D~ 258 (268)
T PF11802_consen 202 DEPSAQLITLREILE---ILMNKLLDSPHDPYVKIDDSFWPPYIELLLRSGIALRHPEDP 258 (268)
T ss_pred cccchhhhHHHHHHH---HHHHHhcCCCCCCceecCcccChHHHHHHHHcCCeeeCCCCc
Confidence 233445555555444 8899998765532222 3433 355677777766654
No 96
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.60 E-value=5.3e+02 Score=32.90 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHH---HHHHHHHHHH----HHHHHhhHHHHHhHhHhhhhh
Q 006179 64 IEILKQKIAACARENSNLQEELSEAY---RIKGQLADLH----AAEVIKNMEAEKQVKFFQGCM 120 (658)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQeELsEAY---RiK~qLadLh----~ae~~Kn~e~EkqvkFfQs~v 120 (658)
...++++++..-+|-.++||+-+.-- +++.++..++ ++--+|-..+=+|..++-.-+
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i 923 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADI 923 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666765544311 2223333332 244444555556666664433
No 97
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.50 E-value=1.8e+02 Score=27.48 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006179 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (658)
Q Consensus 139 E~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~K 192 (658)
..-..+-+++.+++++..++++.....+.....++.++...++..+.+...+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 141 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKE 141 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666666666666666666666665555555555544444443
No 98
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.14 E-value=3e+02 Score=29.93 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006179 17 ARIQQLEHERDELRKDIEQLC 37 (658)
Q Consensus 17 ~rI~qLe~ERdEL~KDIEqLC 37 (658)
+-+.+-+.|||.....+|||=
T Consensus 16 ~eLe~cq~ErDqyKlMAEqLq 36 (319)
T PF09789_consen 16 QELEKCQSERDQYKLMAEQLQ 36 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445558888888888774
No 99
>PLN02939 transferase, transferring glycosyl groups
Probab=55.80 E-value=4.6e+02 Score=32.53 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=20.8
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006179 129 NSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (658)
Q Consensus 129 ~slmEaEkaKE~Ee~m~qk~~~~~~R~~E 157 (658)
.+|-+.+|.--..|+.-.+++-++.|+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 44555666554456666899999999998
No 100
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.79 E-value=1.5e+02 Score=29.61 Aligned_cols=90 Identities=30% Similarity=0.344 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q 94 (658)
+..---+|+|.+.-+.. .| .|++-|+.---+.-.-+-.--..|++++..+++++..+++...+-|.+... .++ .
T Consensus 106 l~na~a~lehq~~R~~N-Le--Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~--~L~-~ 179 (221)
T PF05700_consen 106 LDNAYAQLEHQRLRLEN-LE--LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE--ELR-Y 179 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-H
Confidence 33334467776655432 22 578878543333344444456678888888888888888888888877433 333 5
Q ss_pred HHHHHHHHHHhhHHHH
Q 006179 95 LADLHAAEVIKNMEAE 110 (658)
Q Consensus 95 LadLh~ae~~Kn~e~E 110 (658)
|..-|..-+.||-++|
T Consensus 180 Le~~W~~~v~kn~eie 195 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777778887776
No 101
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.57 E-value=1.7e+02 Score=26.96 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHH
Q 006179 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (658)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~ 143 (658)
++.+++++..+...-..|.-++.|+-....-|..| +.+-+.|. .|...|-..|.+=+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L-----------~~d~~VYk-~VG~vlv~qd~~e~----------- 72 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKL-----------PDDTPIYK-IVGNLLVKVDKTKV----------- 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhhHHHhhccHHHH-----------
Confidence 44455555555555566666666665555555544 33444554 36666765554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
..++++|++-+...+.........|+..+.++..+..
T Consensus 73 ----~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 73 ----EKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344555555555666666666666666666666655
No 102
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.45 E-value=1.5e+02 Score=29.18 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~K 192 (658)
..+++++.+++++..++++.+......+- .-+..+++.+...+.-+|.
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp---~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSENDP---EKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888777764443222 2444555555555555544
No 103
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.23 E-value=1.7e+02 Score=28.98 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--------CchHhhhhhHH--HHhhhhhHHHHHHHHHHHHHhhhh
Q 006179 11 ESEALMARIQQLEHERDELRKDIE---QLCMQQAG--------PSYLAVATRMH--FQRTAGLEQEIEILKQKIAACARE 77 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIE---qLCMQQaG--------pgyl~vATrM~--~qRta~LEQeiE~Lkkkl~~c~re 77 (658)
....|-++|.|..+.+.+|..=+. .+|..... |..-.+.+|.- -||.++|+|-...|+.+|..+...
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788887777765441 12221110 11112223322 379999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHH
Q 006179 78 NSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 78 n~nLQeELsEAYRiK~qLadL 98 (658)
|..|++||. ++..++..+
T Consensus 97 N~~L~~dl~---klt~~~~~l 114 (182)
T PF15035_consen 97 NEALQEDLQ---KLTQDWERL 114 (182)
T ss_pred HHHHHHHHH---HHHHHHHHH
Confidence 999999986 455555543
No 104
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.17 E-value=5.3e+02 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006179 155 LEELSSENIELKKQNATLRFDLEKQEELNESF 186 (658)
Q Consensus 155 ~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~ 186 (658)
++.|...+.+-+++-..||.|++.++.+...-
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~ 430 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEK 430 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777888877776665533
No 105
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=54.63 E-value=1.7e+02 Score=26.86 Aligned_cols=40 Identities=35% Similarity=0.407 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH
Q 006179 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH 99 (658)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh 99 (658)
...+.++++.+........+.|+.++.+|.+ .|.++..++
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~---~r~~l~~~~ 68 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEE---LRSQLQELY 68 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHHHHH
Confidence 3456777888888888888889888888876 566776663
No 106
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=54.20 E-value=3.7e+02 Score=30.45 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=74.0
Q ss_pred hccccccccccccccccccccc-CCcchHHHHHHHHHHHHHHHHhHHHHHhhhh----hhHHHHHHhHHhHHHHHHhhhh
Q 006179 204 LETSWEDKCACLLLDSAEMWSF-NDTSTSKYISALEDELEKTRSSVENLQSKLR----MGLEIENHLKKSVRELEKKIIH 278 (658)
Q Consensus 204 ~~~s~~~Kc~~LL~ds~~~Wsf-n~tstskyi~aLEeEle~lr~~i~~LQsklR----~GLeIenhLkk~vr~Lekkqi~ 278 (658)
.-++.++||..|=.+|..---| +++-...-.+++|.=.+-..+-++.-|+..- .+-.+++.|-.-++.|......
T Consensus 192 eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ 271 (421)
T KOG2685|consen 192 EAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADA 271 (421)
T ss_pred hhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998887654222 2221222223355555545555555554432 3456677788889999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHhhhhcch
Q 006179 279 SDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310 (658)
Q Consensus 279 ~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s 310 (658)
.+.-+.++|++.+......-.+.-+.|+|=..
T Consensus 272 ve~af~~ri~etqdar~kL~~ql~k~leEi~~ 303 (421)
T KOG2685|consen 272 VELAFKKRIRETQDARNKLEWQLAKTLEEIAD 303 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888887433
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.02 E-value=3e+02 Score=29.35 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=79.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhh-hchhhHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE-RDNSVMEA 134 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaE-RD~slmEa 134 (658)
|+.-++-=++.|...+.+.-.|...|-..+..+=.++-.|-+.|..=-.+-..+.+.+..++.|=..-+.. | ..|
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l--- 213 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKL--- 213 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHH---
Confidence 55555555667777788888888888888877778888887777655555555666666665554322211 1 111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Q 006179 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (658)
Q Consensus 135 EkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~e 181 (658)
.+....-+.+.+++.+++.++.++.+.+.+-+.....++.+++..+.
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345566778888888888888888777777777776666644
No 108
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=53.37 E-value=1.5e+02 Score=33.87 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHH
Q 006179 20 QQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71 (658)
Q Consensus 20 ~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl 71 (658)
+||.+|--+|..-.||= |- | ..-+.| .|...||||-..|++||
T Consensus 182 eQLRre~V~lentlEQE--qE----a--lvN~Lw-KrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQE--QE----A--LVNSLW-KRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHhhHHHHH--HH----H--HHHHHH-HHHHHHHHHHHHHHHHh
Confidence 55555555555555542 11 1 222333 45566666666666665
No 109
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=53.06 E-value=50 Score=35.60 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG--pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
.|-.|..-|.+|.+.-.|++.||.-|=||.|- +|.-.+.+|-++..-..|-.++|.+++|....-||
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d----------- 148 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD----------- 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 35667778888888889999999888774432 33344667766655556666688888866544443
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHH
Q 006179 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (658)
Q Consensus 89 YRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~ 122 (658)
+++.+.+. .|+-.+--||+..|.+
T Consensus 149 --~qs~lDEk--------eEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 149 --LQSLLDEK--------EELVTERDAYKCKAHR 172 (319)
T ss_pred --HHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 34444444 4555556667766665
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.01 E-value=2.9e+02 Score=28.87 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=39.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 131 lmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
--|-..+|++.....-++.++..+..+++..+...+..-.++..++...++-.+.-...|+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777778887777777777777666666666666555555444333333
No 111
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.57 E-value=27 Score=28.17 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=29.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
-+.+...+.++|..|++++.....+|..|++++...
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788889999999999999999999888764
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=52.32 E-value=4.4e+02 Score=30.71 Aligned_cols=238 Identities=23% Similarity=0.270 Sum_probs=124.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY- 89 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY- 89 (658)
+.+.+...|..|++|-++|++=.+-.--=-.| .---.++++-|.+.++-++..++.....|.-|..-|..|.+.-|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~---~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRG---AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34556667777777777777755443111112 11235778888999999888888877777655554444433111
Q ss_pred ---HHHHHHHHH---HHHHHHhhHHHHHhHhHhhhhhH------HHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006179 90 ---RIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMA------AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (658)
Q Consensus 90 ---RiK~qLadL---h~ae~~Kn~e~EkqvkFfQs~vA------~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E 157 (658)
++|.+|.+= .-.--.+...|.+.+.|-+.--- .+++.||..
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--------------------------- 236 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--------------------------- 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc---------------------------
Confidence 334444421 12223445566666666543211 122222222
Q ss_pred HHHHHHHHHHhhHHHhhhHHHHHHhhHhH----HHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHH
Q 006179 158 LSSENIELKKQNATLRFDLEKQEELNESF----KEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY 233 (658)
Q Consensus 158 ~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~----~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstsky 233 (658)
......+.+.|+.-+....+|-+.. .+=|...|..+-+...- +-+. .+--
T Consensus 237 ----~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~---~~~~-------------------~~~~ 290 (546)
T KOG0977|consen 237 ----ADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT---SAER-------------------ANVE 290 (546)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---hhcc-------------------ccch
Confidence 1122223333333333333333222 25566666655433321 1111 1122
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 006179 234 ISALEDELEKTRSSVENLQSKLRMGLEIENH-LKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSL 305 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQsklR~GLeIenh-Lkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL 305 (658)
+...-||+-++|..|+-|+.+|.= ||..|- |-+.++.|+-...--.++..-.|.+...-....|++.-.++
T Consensus 291 ~~~~rEEl~~~R~~i~~Lr~klse-lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 291 QNYAREELRRIRSRISGLRAKLSE-LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred hHHHHHHHHHHHhcccchhhhhcc-ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 345678999999999988888752 333333 56677777666655555666666666655556666555443
No 113
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.76 E-value=2.3e+02 Score=27.38 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 62 QEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 62 QeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
.+|++|+.++...+.+...|..||.-.
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 114
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.62 E-value=3.3e+02 Score=28.83 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH--------------HHHHHHHhhhhhhhhccccccccccccccc
Q 006179 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEV--------------INKFYEIRQQSLEVLETSWEDKCACLLLDS 219 (658)
Q Consensus 154 R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kV--------------I~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds 219 (658)
-+.||.+++......|..|....--.++.+-.-..- |+..+.-+-....|.=-+|++|
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek-------- 78 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK-------- 78 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH--------
Confidence 367888888888888888888776666555432222 2222333333333322334444
Q ss_pred ccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 006179 220 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 257 (658)
Q Consensus 220 ~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~ 257 (658)
..+=++.|+++++.|++.|.+.|-.|++
T Consensus 79 ----------~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 79 ----------EESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999999999999999999988
No 115
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.13 E-value=4.7e+02 Score=30.44 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=36.5
Q ss_pred cccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH---hHHhHHHHHHhh
Q 006179 205 ETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH---LKKSVRELEKKI 276 (658)
Q Consensus 205 ~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenh---Lkk~vr~Lekkq 276 (658)
.+....|.--||.|+..| |+.|+.-++.-.+++..|+++.- .| |....|.|+.+.
T Consensus 378 ~~~l~~k~~~lL~d~e~n-----------i~kL~~~v~~s~~rl~~L~~qWe------~~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 378 ELKLKKKTVELLPDAEEN-----------IAKLQALVEASEQRLVELAQQWE------KHRAPLIEEYRRLKEKA 435 (594)
T ss_pred HHHHHHHHHHHhcCcHHH-----------HHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHH
Confidence 344455666677777654 78899888888888888887642 33 445555555443
No 116
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.03 E-value=1.6e+02 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006179 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (658)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~ 179 (658)
+..+.-..+.+++.++..++.+++..+.+.++.-..||.+|..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555555554444554444443
No 117
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.82 E-value=5.4 Score=45.31 Aligned_cols=122 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH---------HHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHH-
Q 006179 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADL---------HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME- 133 (658)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL---------h~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE- 133 (658)
++.+.+.+..+..+|..|+.+-.+|-.+|..|.-| ..+++.+-++=-..+.||..-| ..+-|+-..+|+
T Consensus 269 ~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qv-k~Lee~N~~l~e~ 347 (713)
T PF05622_consen 269 LEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQV-KELEEDNAVLLET 347 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34445555556666777766666666666666544 1233333333334455555555 333333333332
Q ss_pred ---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhH
Q 006179 134 ---AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (658)
Q Consensus 134 ---aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~ 186 (658)
.|..-.+-.+...++..+...+-+++..+.+..+-.+.|.+++..+++.++.+
T Consensus 348 ~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 348 KAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111222233344445555555555555555556666777777776666544
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.31 E-value=3.4e+02 Score=28.53 Aligned_cols=52 Identities=33% Similarity=0.378 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~ 73 (658)
.+.|..++..|+.+..-|.++++++= ...--...|-++|+.++..|+.....
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l~----------~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQLD----------ELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555556666665555541 22223345667788888888775443
No 119
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=48.83 E-value=3.8e+02 Score=28.96 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~ 73 (658)
.+-+..++.+++.+-++..+-+... +++.|- ++.-.+-...+|.+.+++++...+.++.+
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f-~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~l~~ 222 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAF-KQENGG-ILPDQEGDYYSEISEAQEELEAARLELNE 222 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcc-cCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766 555552 22222334456666666666555544443
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.60 E-value=4.5e+02 Score=29.73 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=38.0
Q ss_pred CccchhhhhhchhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHH
Q 006179 522 NSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLV 587 (658)
Q Consensus 522 ~s~D~ARmKVENAtLkEsvesmehLTSSiHRLrl~LlKv~e~v~s~~t~~~~~e~l~~ii~EA~ll 587 (658)
.||++..+.-+ +.+-.+.|+.|..-.+-|.=+-..+-..+.-+.-+.+.++.+|.-+.+|..+
T Consensus 467 g~VNm~ai~~e---~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~l 529 (569)
T PRK04778 467 KPINMEAVNRL---LEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERL 529 (569)
T ss_pred CCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 36666655433 4444444555555555554444444334444777888899999999998765
No 121
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.60 E-value=2.7e+02 Score=27.26 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~ 185 (658)
.+....+.|+..+...+..+++.....+..+..+.+.++.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677777777777777777777777776666663
No 122
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.56 E-value=1.5e+02 Score=26.13 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHH-----HHhhcCCchHh----hhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 006179 12 SEALMARIQQLEHERDEL---RKDIEQL-----CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL---~KDIEqL-----CMQQaGpgyl~----vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (658)
-+.+...+.+|+.++.|. .+.|+.| |...-||-||- -|.-.+-.|...++.+|..+.+++.....+=.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766554 4455554 78888887764 35566777888888888888887776666666
Q ss_pred chHHHHHH
Q 006179 80 NLQEELSE 87 (658)
Q Consensus 80 nLQeELsE 87 (658)
+++.+|.+
T Consensus 95 elk~~l~~ 102 (105)
T cd00632 95 ELQEKIQQ 102 (105)
T ss_pred HHHHHHHH
Confidence 66555544
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=48.34 E-value=6.3e+02 Score=31.40 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=101.8
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHhhcCCch-HhhhhhHHHHhhhhhHHHHHHHHHHHH-----------------
Q 006179 17 ARIQQLEH------ERDELRKDIEQLCMQQAGPSY-LAVATRMHFQRTAGLEQEIEILKQKIA----------------- 72 (658)
Q Consensus 17 ~rI~qLe~------ERdEL~KDIEqLCMQQaGpgy-l~vATrM~~qRta~LEQeiE~Lkkkl~----------------- 72 (658)
+|++-|++ |.+.|+.-|.-|-|--|-.+- +-+++. ---||.-||..+|+|++.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ-EKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKEL 228 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhh-ccccchhhHHHHHHHhhhhhccccccccccccHHHHH
Confidence 45555544 899999999999997766322 222221 22345556666666665442
Q ss_pred -HhhhhhcchHHHHHHHHHHHHHHHHH-------HH--HH----HHhhHHHHHhHhHhhhhhHHHHhhhchhhHH-----
Q 006179 73 -ACARENSNLQEELSEAYRIKGQLADL-------HA--AE----VIKNMEAEKQVKFFQGCMAAAFAERDNSVME----- 133 (658)
Q Consensus 73 -~c~ren~nLQeELsEAYRiK~qLadL-------h~--ae----~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE----- 133 (658)
-.-.||--|.+.+ --+|..|.+. +. +| -+--.++|+..--.|.-|+.--.-++-++||
T Consensus 229 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (977)
T PLN02939 229 DVLKEENMLLKDDI---QFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL 305 (977)
T ss_pred HHHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence 1222343333322 1123333322 00 11 1223456666655666666555555556666
Q ss_pred ------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 006179 134 ------AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQN------ATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201 (658)
Q Consensus 134 ------aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n------~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~ 201 (658)
+-+.-|+.-.++++-++++.++..++..+.+-.-.+ +.||..+.-++++.+.+..-|+-+-++-+.++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (977)
T PLN02939 306 QDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESI 385 (977)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333345555677777888888887777665543211 44666777777777777777777766666665
Q ss_pred hh
Q 006179 202 EV 203 (658)
Q Consensus 202 e~ 203 (658)
+.
T Consensus 386 ~~ 387 (977)
T PLN02939 386 KE 387 (977)
T ss_pred HH
Confidence 54
No 124
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=48.00 E-value=2.5e+02 Score=26.58 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHH
Q 006179 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEK 178 (658)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~ 178 (658)
...+.+++++..+.++-+.+++.|...+.|+..+.+
T Consensus 55 s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777766555555555543
No 125
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=47.81 E-value=6e+02 Score=31.58 Aligned_cols=141 Identities=22% Similarity=0.282 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHh----hhhhHHHHHHHHHHHHHhh---hhhcchHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQR----TAGLEQEIEILKQKIAACA---RENSNLQEE 84 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qR----ta~LEQeiE~Lkkkl~~c~---ren~nLQeE 84 (658)
.|.+-...++||++||++--|+-.| ||- --.-|-..|| .|.++|.|+-||.++.+.+ ++......|
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i--~e~-----k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kne 418 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSI--QEK-----KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNE 418 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Confidence 4566777889999999999888765 331 1233444444 4677788999999877664 344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 85 LSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (658)
Q Consensus 85 LsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~ 164 (658)
|++|-- =+|+.|++++ -+++|.--||.- -|-++.+ ++ -.+.+++++--|++-++.+...
T Consensus 419 L~~a~e----kld~mgthl~---mad~Q~s~fk~L------------ke~aegs-rr-raIeQcnemv~rir~l~~sle~ 477 (1265)
T KOG0976|consen 419 LQEALE----KLDLMGTHLS---MADYQLSNFKVL------------KEHAEGS-RR-RAIEQCNEMVDRIRALMDSLEK 477 (1265)
T ss_pred HHHHHH----HHHHHhHHHH---HHHHHHhhHHHH------------HHhhhhh-Hh-hHHHHHHHHHHHHHHHhhChhh
Confidence 666642 2466666665 468888888864 3433333 22 2335577888888888887777
Q ss_pred HHHhhHHHhhhHHHHHHhhH
Q 006179 165 LKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 165 qk~~n~~LQ~dl~~~~eq~e 184 (658)
|+..- -+|.+++..|+
T Consensus 478 qrKVe----qe~emlKaen~ 493 (1265)
T KOG0976|consen 478 QRKVE----QEYEMLKAENE 493 (1265)
T ss_pred hcchH----HHHHHHHHHHH
Confidence 66433 33444444444
No 126
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=47.73 E-value=8.2e+02 Score=32.51 Aligned_cols=72 Identities=31% Similarity=0.321 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYR 90 (658)
..+.+...|-.||.++-+|.++|+.|=-+- .-=+.++|+....++++++-..-|+.++..-.++|-+
T Consensus 959 ~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-------------~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~ 1025 (1822)
T KOG4674|consen 959 KIESLHKKITSLEEELSELEKEIENLREEL-------------ELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANE 1025 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 356677777888888899999999885332 1124567777777777777777777777777777665
Q ss_pred HHHHH
Q 006179 91 IKGQL 95 (658)
Q Consensus 91 iK~qL 95 (658)
.-+.+
T Consensus 1026 ~~~~~ 1030 (1822)
T KOG4674|consen 1026 QIEDL 1030 (1822)
T ss_pred HHHHH
Confidence 44433
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.35 E-value=2.5e+02 Score=26.43 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHH
Q 006179 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK 140 (658)
Q Consensus 61 EQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~ 140 (658)
-|-+|.|+..|..+--|...||++++..-+-|..+++=.-+-...|.++ ...+..
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------------------------~~~~~~ 69 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------------------------RALKKE 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
Confidence 3557888888888888888888888887777777764311111111111 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 141 Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
-..+-+++.+++.|...+=--+-+--+....|+.|+..+++--
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 2344466666666655444444455567788888888776543
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.96 E-value=2.6e+02 Score=33.06 Aligned_cols=91 Identities=25% Similarity=0.291 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHh
Q 006179 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA 137 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEka 137 (658)
...+.+|..+.+++....++|.+|+-++-+--++-..| |.++.=|.-. ++-
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L--------------~~~l~~~~r~------------~~~--- 468 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL--------------ESELERFRRE------------VRD--- 468 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH------------HHH---
Confidence 66777888888888899999999988876544332222 2222111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006179 138 KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (658)
Q Consensus 138 KE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~ 180 (658)
+.-...++...+.|+..|+..+.+++.--+.|...|+.++
T Consensus 469 ---~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 469 ---KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred ---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122344555667777777777777766666666666665
No 129
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=46.89 E-value=59 Score=29.68 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=6.8
Q ss_pred hHHHHHhHhHhhhhhHHHHhhhchhhHHHH
Q 006179 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (658)
Q Consensus 106 n~e~EkqvkFfQs~vA~AFaERD~slmEaE 135 (658)
+.+||+|+|.|.. .|.-++..|..||+..
T Consensus 28 ~~eLe~q~k~F~~-qA~~V~~wDr~Lv~n~ 56 (116)
T PF05064_consen 28 NKELEEQEKEFNE-QATQVNAWDRQLVENG 56 (116)
T ss_dssp ----------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5788999999986 5788999999999854
No 130
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.79 E-value=1.4e+02 Score=25.82 Aligned_cols=43 Identities=30% Similarity=0.253 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006179 413 VNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 455 (658)
Q Consensus 413 ~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~ 455 (658)
++..||..+++|++.-.+..++.-..--|..+|++++.-..++
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444445555555566666665555543
No 131
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.23 E-value=7.5e+02 Score=31.66 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh------hcccc----ccccccccccccc
Q 006179 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV------LETSW----EDKCACLLLDSAE 221 (658)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~------~~~s~----~~Kc~~LL~ds~~ 221 (658)
..|+++++..+.+.++.-+++|-.-++ +++.+.+...|..-+.++.+-... ..+.. -.||++-+--+.
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~- 934 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD- 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc-
Confidence 345566666666666666666644444 566666666666665544332211 11111 123443333222
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHH
Q 006179 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHV 301 (658)
Q Consensus 222 ~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~I 301 (658)
|. -+...+-++-|+.+.+.++.+++.|-.. .+|+...+-++++.-- =-.++|-+++.-|...+..+
T Consensus 935 -~~--i~k~q~~l~~le~~~~~~e~e~~~L~e~-------~~~~~~k~~E~~~~~~----e~~~~~~E~k~~~~~~k~~~ 1000 (1293)
T KOG0996|consen 935 -RN--IAKAQKKLSELEREIEDTEKELDDLTEE-------LKGLEEKAAELEKEYK----EAEESLKEIKKELRDLKSEL 1000 (1293)
T ss_pred -cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 11 1234455566666666666655555433 3444444444444321 23567777777777777777
Q ss_pred HHhhhhcchhhhhhHHHHHhhh
Q 006179 302 VNSLEEGRSHIKSISDVIEEKT 323 (658)
Q Consensus 302 m~lL~ee~s~i~s~v~~ieekl 323 (658)
-++=+.+-..-...|+ |+.|+
T Consensus 1001 e~i~k~~~~lk~~rId-~~~K~ 1021 (1293)
T KOG0996|consen 1001 ENIKKSENELKAERID-IENKL 1021 (1293)
T ss_pred HHHHHHHHHHHHhhcc-HHHHH
Confidence 6665554444444555 66666
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.93 E-value=3.9e+02 Score=28.31 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHhhh
Q 006179 236 ALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 236 aLEeEle~lr~~i~~LQskl 255 (658)
.++++.+++.++++..++.|
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777766555443
No 133
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.39 E-value=3.9e+02 Score=28.07 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHH
Q 006179 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRI-KGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRi-K~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEk 136 (658)
+|=++-++.|+++....-.|-..=.+++++|-|| |.-|+.|- ||+-++--.-.==+.-+.|+|-
T Consensus 29 ~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Ls---------------q~E~~mlKtqrv~e~nlre~e~ 93 (222)
T KOG3215|consen 29 DGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLS---------------QDEPSMLKTQRVIEMNLREIEN 93 (222)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHh---------------hcccchHHHHHHHHHHHHHHHH
Confidence 3446667777777665555544444459999999 55577773 3333333333333444566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 137 AKEKEELMSQKFNEFQTRLEELSSENIELK 166 (658)
Q Consensus 137 aKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk 166 (658)
--+..+.|-++|.+-..-++.+-.++.+.|
T Consensus 94 ~~q~k~Eiersi~~a~~kie~lkkql~eaK 123 (222)
T KOG3215|consen 94 LVQKKLEIERSIQKARNKIELLKKQLHEAK 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777787777777777766666555
No 134
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.94 E-value=2.1e+02 Score=30.89 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~ 73 (658)
...+..++.+|+.++.+|.. .-||.+=.|- .|..+|+.+++++..
T Consensus 249 ~~~l~~~l~~l~~~l~~l~~--------~y~~~hP~v~---------~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 249 NSELDGRIEALEKQLDALRL--------RYTDKHPDVI---------ATKREIAQLEEQKEE 293 (498)
T ss_pred CCchHHHHHHHHHHHHHHHH--------HhcccChHHH---------HHHHHHHHHHHHHHh
Confidence 44677888898888888874 3466664441 233445555555533
No 135
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.30 E-value=1.8e+02 Score=25.17 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhh---HHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 006179 248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHS---DKFISNAIAELRLCHSQLRVHVVNSLE 306 (658)
Q Consensus 248 i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~---dk~i~ngi~~lq~~h~~~R~~Im~lL~ 306 (658)
++.|+.|+...++--..|+..+..|..+..-+ ..-++.-...|++.|.....+|-++|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777777777777765422 223344556677888888888877775
No 136
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.10 E-value=4.2e+02 Score=28.12 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR 256 (658)
..|+.|++++..|++.|..|+...+
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6799999999999999999998765
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.82 E-value=7.1e+02 Score=30.82 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 006179 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (658)
Q Consensus 59 ~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qL 95 (658)
+|.-+|+++|.+.....-+|..|++++-.---.++||
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql 704 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQL 704 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688888888888888888777654443333333
No 138
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=43.72 E-value=3.5e+02 Score=27.12 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=65.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhhhccccccccc
Q 006179 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (658)
Q Consensus 135 EkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e-~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~ 213 (658)
.+.|+....+++=+.+|+.++.++...+.+-- +.+-..+...+++-. .=+.+|..+|+=.|......-..|+++
T Consensus 60 ~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~---~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~-- 134 (215)
T PF07083_consen 60 DKRKEIKKEYSKPIKEFEAKIKELIAPIDEAS---DKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI-- 134 (215)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh--
Confidence 35567888888999999999999987775443 333333333333322 224566666665554433222334444
Q ss_pred ccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 214 ~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQs 253 (658)
-...|.=.++|..+.+..+..-+..+...+.-+-.
T Consensus 135 -----~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~~ 169 (215)
T PF07083_consen 135 -----IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIKA 169 (215)
T ss_pred -----cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568777888888777777666665554444433
No 139
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.65 E-value=8.4e+02 Score=31.51 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=63.2
Q ss_pred HhhhhhHHHHh----hhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006179 115 FFQGCMAAAFA----ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (658)
Q Consensus 115 FfQs~vA~AFa----ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~k 188 (658)
-+|+-||.+|. ||-.-|=||=+.+.+-+....++...+.++.++...+.+.+..-..|+.+....++..+...+
T Consensus 265 ~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 265 ESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred hhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888884 888889999999999999999999999999999998988888888888888888877765544
No 140
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=43.29 E-value=3.5e+02 Score=27.05 Aligned_cols=124 Identities=23% Similarity=0.352 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH--
Q 006179 14 ALMARIQQLEHERDELRKDIE---QLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS-- 86 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIE---qLCMQQaG--pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELs-- 86 (658)
.|...|.+|+.+-++|+++-. +++.-|.. -.|-+.-+. +.|..+....||-+|+.+|-..-..+..+...+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~-Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAE-LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777777776643 44554443 333333332 4677788888999999988887777777777776
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 87 --EAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 87 --EAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (658)
+-|+++.++-.|.+. |+ |+.|.|.++.-.+=..+-+++.+-+.++.+++..+
T Consensus 95 ~~el~k~~~~l~~L~~L------------------~~------dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKL------------------SE------DKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHH------------------HH------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766332 11 34444555554444444455555555555554443
No 141
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=42.94 E-value=2.4e+02 Score=24.99 Aligned_cols=78 Identities=24% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhh-hHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 006179 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT-RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (658)
Q Consensus 16 ~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vAT-rM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q 94 (658)
..++.+|...+++...++...+ ++| +++.. +++..=...|.+.|...+..+..+-..=...++.|.+|++=+..
T Consensus 33 ~~~l~~l~~~~~~~~~~~~~~~----~~g-~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~ 107 (141)
T TIGR02473 33 ETQLQQLIKYREEYEQQALEKV----GAG-TSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444332 334 33333 33444467899999999999999988888999999999998888
Q ss_pred HHHH
Q 006179 95 LADL 98 (658)
Q Consensus 95 LadL 98 (658)
+..|
T Consensus 108 lekL 111 (141)
T TIGR02473 108 LEKL 111 (141)
T ss_pred HHHH
Confidence 8877
No 142
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.74 E-value=6.7e+02 Score=30.12 Aligned_cols=196 Identities=20% Similarity=0.148 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHH------hhhhhc
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLC-----MQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAA------CARENS 79 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLC-----MQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~------c~ren~ 79 (658)
.++-..+||.++.-+-.+|++=++-.= ||-.|..|-. |..|=+-=++|--+..++-+.. .+-.+-
T Consensus 424 ~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed----~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k 499 (698)
T KOG0978|consen 424 ALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED----MQEQNQKLLQELREKDDKNFKLMSERIKANQKHK 499 (698)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhh--------------hchhhHHHHHhHHHHHHHH
Q 006179 80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE--------------RDNSVMEAEKAKEKEELMS 145 (658)
Q Consensus 80 nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaE--------------RD~slmEaEkaKE~Ee~m~ 145 (658)
-|-++++.---...+|..--.+...+-..+|.|+++-|+.+..--+| .=.+-.+++..+..-+.--
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH------------HHHHHhhhhhhhhccccccc
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN------------KFYEIRQQSLEVLETSWEDK 211 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~------------KFyeiR~~~~e~~~~s~~~K 211 (658)
+++.+++.++.+....++..+.-+..||.+++.+.--.+-..+... |=|-=+..=+.|. +-|-+.
T Consensus 580 ~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn-~R~Kd~ 656 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCN-TRWKDA 656 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCcc-CchhhH
No 143
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=42.62 E-value=6.9e+02 Score=30.20 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=37.3
Q ss_pred hhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 126 ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
++++--++-.++...=+.-..+|.+.+.+++++++.+.-.++.|..+-..+...++.++
T Consensus 604 eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 604 EKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555677788888888888888888777777666666655544
No 144
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.47 E-value=4.3e+02 Score=27.78 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=49.4
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaE 135 (658)
|+.-++.=++.|...+.+.-.|...|...+..+-.++-.|.+.| ..++.++.=.+..++. ...-|.. |.+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~-------~~L~~e~~~Lk~~~~e-~~~~D~~--eL~ 212 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK-------AELEEELENLKQLVEE-IESCDQE--ELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh-hhhcCHH--HHH
Confidence 66666665666777777776676666666666555555555443 4455555555544433 4444443 333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 136 KAKEKEELMSQKFNEFQTRLEELSSE 161 (658)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~ 161 (658)
.+|..=.....++..+...+.+++.+
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333344333333333333
No 145
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.43 E-value=3.2e+02 Score=27.02 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeEL 85 (658)
..+.|.+.|..++.+..+|+..|+.. .+| +.. ..-....++-..|+++++.|+++|....+-+...-+++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~---~~~r~~~--~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEA---KKGREES--EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---Hhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35566677777777777777777766 233 222 12223344445555555555555554444433333333
No 146
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=42.35 E-value=77 Score=26.34 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.0
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 006179 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSL 305 (658)
Q Consensus 268 ~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL 305 (658)
++.+|+++.+.+|..|.--|.+|+..|..-|.=|..-+
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 46789999999999999999999999999998876544
No 147
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=41.93 E-value=3.2e+02 Score=26.08 Aligned_cols=63 Identities=27% Similarity=0.398 Sum_probs=36.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHhHhHhhhhhHH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA-----AEVIKNMEAEKQVKFFQGCMAA 122 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~-----ae~~Kn~e~EkqvkFfQs~vA~ 122 (658)
.-+-.+||.+.+.|-++ |+.-..++=..|=..-..|+++.. .+...-......||||..-.-.
T Consensus 26 ~~~l~~LEae~q~L~~k------E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~ 93 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQK------EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKE 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHH
Confidence 33456677777777663 444445555555555566665533 3344455666788888754433
No 148
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=40.95 E-value=2.1e+02 Score=27.77 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=51.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH-HHHHHHHHHHhhH-HHHHhHhHhhhhhHHHHhhhchhhH
Q 006179 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ-LADLHAAEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVM 132 (658)
Q Consensus 55 qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q-LadLh~ae~~Kn~-e~EkqvkFfQs~vA~AFaERD~slm 132 (658)
.|-..+++.+..|+++.-..-.++..|++ +-|.|-++++ |-.+...+ .|. .....++-.+..+.+-+.
T Consensus 2 ~~~~ei~~~l~~l~~~vq~~e~~~k~Le~-~QE~f~~~~q~lq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 71 (182)
T PF01017_consen 2 EKQQEIEQKLQDLRNRVQETENDIKSLED-LQEEFDFQYQTLQQLQETE--QNSNALKEQLKQEQQQLQQMLN------- 71 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCTTTTT----STTTHHHHHCCCCCHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc--chhhhhHHHHHHHHHHHHHHHH-------
Confidence 34556777788888877777777777764 5688888886 21221111 111 122223333322222222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (658)
....+...+..++.+.=.+++.+++.+
T Consensus 72 ---~L~~~R~~lv~~l~~~~~~~~~lq~~l 98 (182)
T PF01017_consen 72 ---ELDQKRKELVSKLKETLNCLEQLQSQL 98 (182)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444556667777777777776554
No 149
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.88 E-value=3e+02 Score=30.98 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQA--GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQa--Gpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
..++.+.-|..||.+.-+++-+.-+|=...+ .|.+ ..+-.|.++|++.|...+.++++-.. +.+|-.-++
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV-----~~l~~rI~aLe~QIa~er~kl~~~~g-~~~la~~la-- 351 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLI-----PRLSAKIKVLEKQIGEQRNRLSNKLG-SQGSSESLS-- 351 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-----hHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhHHHH--
Confidence 3678889999999999999998887733211 2555 45667899999999999999974321 112211111
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHh
Q 006179 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA 137 (658)
Q Consensus 89 YRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEka 137 (658)
.=.+|+=+..|=|...+.|.+--+++-+||.+.
T Consensus 352 ----------------eYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 352 ----------------LFEDLRLQSEIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 113334445555556677777777777776653
No 150
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.86 E-value=7.9e+02 Score=30.10 Aligned_cols=71 Identities=25% Similarity=0.267 Sum_probs=55.0
Q ss_pred hHhhhhhHHHHhhh--chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 114 KFFQGCMAAAFAER--DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 114 kFfQs~vA~AFaER--D~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
+..|+..|.|.-+- ||+..|+-+.|+.+-+++---.+|.+|+.+++...--.-+-.|+|.++...+++...
T Consensus 368 qll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 368 QLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555565555 899999999999999999999999999999988776666667888888776665544
No 151
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.22 E-value=6e+02 Score=30.23 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHhhcC--CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 006179 37 CMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (658)
Q Consensus 37 CMQQaG--pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLad 97 (658)
|.+.+| |..|.-|-.++......++.=|+.|..+....-.+...+...+.++=+.+..|..
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667 5566777777777777888777777775555444444555555555555544443
No 152
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.04 E-value=2e+02 Score=25.06 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQLC 37 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqLC 37 (658)
-.+..++..|.++|+++.|.|-++=
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3466677777788888888776653
No 153
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=38.97 E-value=7.4e+02 Score=29.51 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHHHhhh-cc
Q 006179 267 KSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QH 325 (658)
Q Consensus 267 k~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~ 325 (658)
..+..||--.+--.+++.|-.+.|+.--+..-.+||.+-.. .+++...++++.+-+ ++
T Consensus 372 ~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~-~~el~~~~~~~ke~i~kl 430 (629)
T KOG0963|consen 372 ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKK-GEELEAKATEQKELIAKL 430 (629)
T ss_pred cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhh-hhhhHHHHHHHHHHHHHH
Confidence 44445555555667889999999999999999999887554 457777888887776 55
No 154
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.61 E-value=2.4e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHhhhhhh-----HHHHHHhHHhHHHH
Q 006179 228 TSTSKYISALEDELEKTRSSVENLQSKLRMG-----LEIENHLKKSVREL 272 (658)
Q Consensus 228 tstskyi~aLEeEle~lr~~i~~LQsklR~G-----LeIenhLkk~vr~L 272 (658)
.+....+..|+..++.+..-++..+.-|.-| |...+++..+++.|
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888887765 44445555555444
No 155
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.85 E-value=3e+02 Score=24.62 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHh----hhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 006179 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl~----vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (658)
...+...+.+|+.+..|...=++.| |.-..||-||- -|--=+--|...++-.|..|.+++..+...=.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778887777776655544 77777776642 12233445666677777777777777766666
Q ss_pred chHHHHHHHH
Q 006179 80 NLQEELSEAY 89 (658)
Q Consensus 80 nLQeELsEAY 89 (658)
++|..|-++|
T Consensus 99 e~q~~l~~~~ 108 (110)
T TIGR02338 99 ELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHh
Confidence 6676666654
No 156
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.56 E-value=9.6e+02 Score=30.42 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=30.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH-HHHHHHHHh
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA-DLHAAEVIK 105 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLa-dLh~ae~~K 105 (658)
+|--+..+-+|+.-++.|.+..|+=..|+--=..-.++|.||. .+|...+.+
T Consensus 676 l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~ 728 (1174)
T KOG0933|consen 676 LQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLE 728 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777777765555443333445777776 445544443
No 157
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=37.43 E-value=5.8e+02 Score=27.81 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=71.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVM 132 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY-RiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slm 132 (658)
-.+-.++|.-+-.||.=+..++|-+..|.||.-.++ +||..+++| |+| +.+|--+||
T Consensus 149 KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l------------------~~c----L~dREvaLl 206 (302)
T PF07139_consen 149 KKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAEL------------------QSC----LMDREVALL 206 (302)
T ss_pred cccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------------------HHH----HHHHHHHHH
Confidence 356789999999999999999999999999997655 899999999 333 456766766
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh
Q 006179 133 -EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA-TLRFDLEKQEELNESFKEVINKFYEIRQQSLEV 203 (658)
Q Consensus 133 -EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~-~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~ 203 (658)
|-.|+| +|+|. -|..=+++.+ ++|++-+ +-|| -++|.--+..=|.-|--=|.++-+-
T Consensus 207 ~EmdkVK--~EAme-iL~aRqkkAe-------eLkrltd~A~~M----sE~Ql~ELRadIK~fvs~rk~de~l 265 (302)
T PF07139_consen 207 AEMDKVK--AEAME-ILDARQKKAE-------ELKRLTDRASQM----SEEQLAELRADIKHFVSERKYDEEL 265 (302)
T ss_pred HHHHHHH--HHHHH-HHHHHHHHHH-------HHHHHHHHHhhc----CHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 444444 45542 1222233333 3333322 2222 2333333445566666666666543
No 158
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=35.86 E-value=66 Score=30.05 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
+.|.+.+|+...+.+.+++.++++++..+++|++
T Consensus 100 ~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 100 ARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888889999999999999999888764
No 159
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.83 E-value=7.7e+02 Score=28.82 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHH---HHHhhhhhHHHHHHHHHHHHHhhhhhHH--HHH---H-h
Q 006179 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRE---LEKKIIHSDKFISNAIAELRLCHSQLRV--HVV---N-S 304 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~---Lekkqi~~dk~i~ngi~~lq~~h~~~R~--~Im---~-l 304 (658)
..+|+...+..+..|.+|+..+.+ ++.||+..-++ |+++...-.+-=+=-|++.+.--+..+. +|. + =
T Consensus 359 k~~l~~~~e~~k~~ie~L~~el~~---~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEq 435 (546)
T PF07888_consen 359 KQALQHSAEADKDEIEKLSRELQM---LEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQ 435 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666777777777755 36677543332 3333321111101123333333222222 111 1 3
Q ss_pred hhhcchhhhhhHHHHHhhh
Q 006179 305 LEEGRSHIKSISDVIEEKT 323 (658)
Q Consensus 305 L~ee~s~i~s~v~~ieekl 323 (658)
|.+|++-|.--|-.++.||
T Consensus 436 l~~EkQeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 436 LQEEKQELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666777777788887
No 160
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.69 E-value=2.2e+02 Score=27.31 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 006179 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (658)
Q Consensus 139 E~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl 176 (658)
+.......++.+..+.++..+.+++..|.+-..|+.+|
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444556667777777777777777777666666554
No 161
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=35.46 E-value=6.1e+02 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFD 175 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~d 175 (658)
..+-.++..|.+|+.++..-+....++..-+...
T Consensus 220 ~~vf~~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~ 253 (579)
T PF08385_consen 220 KKVFGRLDAFKERLEDIKEIRETHEQFSRLLKSE 253 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566778888888888888777777776666665
No 162
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.17 E-value=3.8e+02 Score=26.83 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=37.8
Q ss_pred hHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q 006179 112 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK----------FNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (658)
Q Consensus 112 qvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk----------~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~ 180 (658)
.|+|.|+-+-..++=+|...-=.+..|..|+.+.++ +.+++..+.+++-+....+..+.+-..++..++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888886555455555555554443 444444444444443333333333334444443
No 163
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.12 E-value=9e+02 Score=29.36 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=25.6
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 223 Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
|.--.--...-|..|+++.+.|.+.++.||-.|
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544434456779999999999999999998544
No 164
>PLN03188 kinesin-12 family protein; Provisional
Probab=35.01 E-value=1.1e+03 Score=30.41 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=32.3
Q ss_pred HHHHhhhchhhHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-HHHHhhHHHhhhHHHHHHhh
Q 006179 121 AAAFAERDNSVMEAEKAKEKEELM----------------SQKFNEFQTRLEELSSENI-ELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 121 A~AFaERD~slmEaEkaKE~Ee~m----------------~qk~~~~~~R~~E~~s~~~-~qk~~n~~LQ~dl~~~~eq~ 183 (658)
|.|+|- .-|.+-+|+.||++-.+ .|.--++-=|++|.+...- .||+.+++ +-+-++++.|.
T Consensus 1157 ~~alaa-e~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~-eqe~~~~~k~~ 1234 (1320)
T PLN03188 1157 INALAA-EISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDA-EQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 444442 34556777777765322 1223356667777765443 34444444 33444555555
Q ss_pred HhH
Q 006179 184 ESF 186 (658)
Q Consensus 184 e~~ 186 (658)
+.+
T Consensus 1235 ~kl 1237 (1320)
T PLN03188 1235 DKL 1237 (1320)
T ss_pred HHH
Confidence 533
No 165
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=34.49 E-value=4.5e+02 Score=25.72 Aligned_cols=46 Identities=28% Similarity=0.254 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 006179 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (658)
Q Consensus 229 stskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i 283 (658)
+..+...-||+-.+.+.++|+.|.++++.= . .|.=+=|-++|.||=
T Consensus 78 ~~~~~~~~LEe~ke~l~k~i~~les~~e~I-------~--~~m~~LK~~LYaKFg 123 (131)
T KOG1760|consen 78 KLDKLQDQLEEKKETLEKEIEELESELESI-------S--ARMDELKKVLYAKFG 123 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHHHHhc
Confidence 456788889999999999999999998763 1 222233445777763
No 166
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.17 E-value=4.1e+02 Score=25.11 Aligned_cols=76 Identities=28% Similarity=0.305 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcch-HHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNL-QEELSEA 88 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG-pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nL-QeELsEA 88 (658)
+...+...|.+|+.+-.+|++++-.|--+-+. -+.+ .|-=+-...+.|+++|+.|..+|...-..+... .+|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 46677888999999999999999888876654 1111 111245667889999999999998776643332 3344433
No 167
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.21 E-value=1.5e+02 Score=23.95 Aligned_cols=38 Identities=37% Similarity=0.498 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
+.+.+++.++..+++.....+..+..|+..+..+..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666666655555555443
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=32.55 E-value=31 Score=39.65 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=36.4
Q ss_pred hhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 126 ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
|||.+.||+|+|. .+-|+-.||-.-..|+.+.-.||+..++++--.
T Consensus 33 E~dr~~WElERaE------------lqariAfLqgErk~qenlk~dl~rR~kmlE~~l 78 (577)
T KOG0642|consen 33 ERDRARWELERAE------------LQARIAFLQGERKGQENLKMDLVRRIKMLEFAL 78 (577)
T ss_pred hhhhhheehhhhh------------HHHHHHHHhcchhhhHHHHHHHHHHHhcccchh
Confidence 8999999999986 566777788778888888888888777765433
No 169
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.28 E-value=1.1e+03 Score=29.70 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=34.3
Q ss_pred Hhhhh---hHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 46 LAVAT---RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 46 l~vAT---rM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
+-.|| -|--.|+-.|++|.|.+|.++.....|=.=|..|..|
T Consensus 313 iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 313 IEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 5888999999999999999999888887777777654
No 170
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=32.04 E-value=1.8e+02 Score=33.39 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhchHHHHHHHHHh----hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006179 390 LQEKVAALLLLSQQEERHLLERN----VNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 455 (658)
Q Consensus 390 L~EKveALlLlSQqeER~llE~~----~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~ 455 (658)
|.+||+.|. -.-=|-+||+| ..+-||.....-|+-|--..+||=-.-|||-++|-.|-.|+|+
T Consensus 367 Lk~niEeLI---edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 367 LKENIEELI---EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHH---HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
No 171
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.98 E-value=9.3e+02 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhh
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRT 57 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRt 57 (658)
...++..+.++.++-..-+.+|+..|.+.-+ ...+|+-+.+-
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~ 218 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADS 218 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Confidence 3445566666666666677888999988877 34444444443
No 172
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.96 E-value=1.4e+02 Score=32.61 Aligned_cols=72 Identities=28% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 006179 384 ETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEE 463 (658)
Q Consensus 384 ~aLAqAL~EKveALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~ 463 (658)
-||-|-++-|++|+-.|-|.=|.+--|+.--.+ ..|-||+|++- |+-+.++|-
T Consensus 19 sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~---~aETLeln~ea--------------lere~eLla---------- 71 (389)
T KOG4687|consen 19 SALHQKCGAKTDAIRILGQDLEKFENEKDGLAA---RAETLELNLEA--------------LERELELLA---------- 71 (389)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHH--------------HHhhhHHHH----------
Confidence 478899999999999999999999888876666 89999999886 444555554
Q ss_pred hhccCCCcccccccCcchhhH
Q 006179 464 KVLAGNGEKRIVIPERDGRLR 484 (658)
Q Consensus 464 ~~~~~~~~r~i~~~e~~g~lk 484 (658)
.++.+.++-.+++||.-.-
T Consensus 72 --a~gc~a~~e~gterqdLaa 90 (389)
T KOG4687|consen 72 --ACGCDAKIEFGTERQDLAA 90 (389)
T ss_pred --hcCCCchhhccchhhHHHH
Confidence 2355566656666655433
No 173
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.75 E-value=3.9e+02 Score=31.63 Aligned_cols=95 Identities=24% Similarity=0.216 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQ---LCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEq---LCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
-.|++..|++|||.|-+.||.|+-+ -|++--.-+ -.-|++- ..=++|+|.|---|++.-..|+-|..-||.
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~---~~lr~~~---~e~~~~~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL---QELRKYE---KESEKDTEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4578899999999999999988743 343211100 0012211 224678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 006179 88 AYRIKGQLADLHAAEVIKNMEAEK 111 (658)
Q Consensus 88 AYRiK~qLadLh~ae~~Kn~e~Ek 111 (658)
-=|||--|=--.|.+.-+-+.++.
T Consensus 613 EtriKldLfsaLg~akrq~ei~~~ 636 (697)
T PF09726_consen 613 ETRIKLDLFSALGDAKRQLEIAQG 636 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997655444444444333333
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.74 E-value=1.1e+03 Score=29.35 Aligned_cols=343 Identities=21% Similarity=0.207 Sum_probs=175.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---CCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 006179 9 ENESEALMARIQQLEHERDELRKDIEQLCM-QQA---GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (658)
Q Consensus 9 ~~~~e~l~~rI~qLe~ERdEL~KDIEqLCM-QQa---Gpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeE 84 (658)
.-+.|+...|++++- |+|+ -...|| ||. ||+|+..-+- +-++-.+||--|.++.. -.-+.+=|++
T Consensus 578 rvGke~f~srL~~ls--r~e~---ysra~~kqq~~l~~~~k~~lD~~-f~kL~kele~~i~k~ls-----~~~eee~~~~ 646 (970)
T KOG0946|consen 578 RVGKENFISRLQRLS--RHEL---YSRASMKQQPQLKSNTKLALDFE-FKKLFKELEGLIAKLLS-----SKTEEEEQTQ 646 (970)
T ss_pred HHhHHHHHHHHHHhh--HhHH---HHHHhhccCccCCCCchhhhhHH-HHHHHHHHHHHHHHHhc-----CCCccchhhH
Confidence 345677777777775 3444 234899 444 5777544332 34677777777766654 1233455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 85 LSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (658)
Q Consensus 85 LsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~ 164 (658)
+++-|-=+-+=.-.+-+.+.+..+ -+-|.-|+++++|..+-.++++.+....|....
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD-----------------------~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsq 703 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELD-----------------------YQIENLKQMEKELQVENEELEEEVQDFISEHSQ 703 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777664322111111122222222 234455678888888888888888877777777
Q ss_pred HHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHH
Q 006179 165 LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKT 244 (658)
Q Consensus 165 qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~l 244 (658)
.|++.+-|...|..--..+..+.. ..++ ++| -.+-+.++..|..++
T Consensus 704 l~~q~~~Lk~qLg~~~~~~~~~~q--------------~~e~-------------------~~t-~~eel~a~~~e~k~l 749 (970)
T KOG0946|consen 704 LKDQLDLLKNQLGIISSKQRDLLQ--------------GAEA-------------------SKT-QNEELNAALSENKKL 749 (970)
T ss_pred HHHHHHHHHHHhcccccchhhHHh--------------HHHh-------------------ccC-ChHHHHHHHHHHHHH
Confidence 777766665554422111110000 0000 111 235567777888888
Q ss_pred HHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHHHh
Q 006179 245 RSSVENLQSKLRMGLEIENHLKKSVRELEKKII---HSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEE 321 (658)
Q Consensus 245 r~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi---~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~iee 321 (658)
.+....|+.+|-=|..--+-.|...+.=+-.+- -+-+-=++-+..+++ - .+-..-|.+-.+.+.+.=..|+.
T Consensus 750 ~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l----~e~~~~l~~~q~e~~~~keq~~t 824 (970)
T KOG0946|consen 750 ENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-L----SEESTRLQELQSELTQLKEQIQT 824 (970)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-h----hhhhhHHHHHHHHHHHHHHHHHH
Confidence 888888888876665555555555553333221 111111222222222 0 11111122333334444444555
Q ss_pred hh-cccccc--cc---ccccCCCccccccccccccceeeccCCCCccccCCCCCCcchhhhcccCCchHHHHHHHHHHHH
Q 006179 322 KT-QHCDDV--IR---GQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVA 395 (658)
Q Consensus 322 kl-~~~~n~--~~---E~n~~~pq~e~~~~e~ec~dVhv~~d~~p~~~~k~~~ps~~~~~~d~~~d~s~aLAqAL~EKve 395 (658)
++ .+.+.. .+ +++ -+|..+...-+-.|-. ---.+..-+-++-+++||.-
T Consensus 825 ~~~~tsa~a~~le~m~~~~-~~la~e~~~ieq~ls~------------------------l~~~~k~~~nli~~ltEk~~ 879 (970)
T KOG0946|consen 825 LLERTSAAADSLESMGSTE-KNLANELKLIEQKLSN------------------------LQEKIKFGNNLIKELTEKIS 879 (970)
T ss_pred HHHHHHhhhhhhHHhhccc-cchhhHHHHHHHHHHH------------------------HHHHhhhhhhHHHHHhhhhh
Confidence 55 332211 00 000 1112222111111110 01113455678889999988
Q ss_pred HHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006179 396 ALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEK 455 (658)
Q Consensus 396 ALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~ 455 (658)
+|- -|-+- |.-...+++-+-+-|+-++.-.+.|+=.-+|++|.-++-.+.|++.
T Consensus 880 sl~---~qads---e~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~ 933 (970)
T KOG0946|consen 880 SLE---AQADS---ETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEA 933 (970)
T ss_pred hHH---Hhhcc---hHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 876 11111 2222233333445566666667778888999999999999999863
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.39 E-value=5.4e+02 Score=25.67 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhh--hHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT--RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vAT--rM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
|..|..=+.+++.|+.+|++++.+.=--.. ..-..=+ +..-+...+|+.+-+.|..+...+-+|...|+.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~--~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~------ 128 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQ--SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR------ 128 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 455566677888999999998875322111 0100000 112334444555555555555554444433332
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhHhHh
Q 006179 90 RIKGQLADLHAAEVIKNMEAEKQVKFF 116 (658)
Q Consensus 90 RiK~qLadLh~ae~~Kn~e~EkqvkFf 116 (658)
|.-..+-|..+..-+||.=||+.+.=-
T Consensus 129 kf~~~i~evqQk~~~kn~lLEkKl~~l 155 (201)
T PF13851_consen 129 KFESAIQEVQQKTGLKNLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888999999887643
No 176
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.26 E-value=2.4e+02 Score=27.05 Aligned_cols=65 Identities=26% Similarity=0.342 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchH
Q 006179 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQ 82 (658)
Q Consensus 16 ~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQ 82 (658)
+.|+-.+-++...+++.++.+=-|-.+.. ..+.+......+.++.||++|+++|.....|...|+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~--~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESAS--EAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443321 123333566777788888888887777555544444
No 177
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.08 E-value=16 Score=41.64 Aligned_cols=105 Identities=30% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHh------------hh----hhHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLA------------VA----TRMHFQRTAGLEQEIEILKQKIAACARE 77 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~------------vA----TrM~~qRta~LEQeiE~Lkkkl~~c~re 77 (658)
.+...-..|..|||.|+--++.|..-++.++.++ .+ +.=...|..-||.|-..|+.+.++...+
T Consensus 402 ~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e 481 (713)
T PF05622_consen 402 ALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEE 481 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 3334444555577778777777655333211111 11 1113456677888888887777666433
Q ss_pred h-cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhh
Q 006179 78 N-SNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG 118 (658)
Q Consensus 78 n-~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs 118 (658)
. .-|+.+|.+|-+.|..|-.-+...-.+..+++.|+.=-|.
T Consensus 482 ~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 482 KLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4688889999888888887766665666677666654443
No 178
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.80 E-value=7.5e+02 Score=29.06 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhh
Q 006179 65 EILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCM 120 (658)
Q Consensus 65 E~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~v 120 (658)
..+-+.+++.-.+|.||.+-.+||..+-...-.| -.|-..+-.+.--||+.|
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l----~ek~r~l~~D~nk~~~~~ 318 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTL----REKWRALKSDSNKYENYV 318 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHH
Confidence 3445556666668888999888888876665555 122233334444455544
No 179
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.11 E-value=7.7e+02 Score=27.03 Aligned_cols=62 Identities=29% Similarity=0.345 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHH
Q 006179 158 LSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISAL 237 (658)
Q Consensus 158 ~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aL 237 (658)
+-..|+...+.++.|.+||..-+-|.-.+-+-++ |.-+-|..|
T Consensus 72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~-------------------------------------s~Kkqie~L 114 (307)
T PF10481_consen 72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN-------------------------------------SCKKQIEKL 114 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH-------------------------------------HHHHHHHHH
Confidence 3446888888899999998877666542222222 122467888
Q ss_pred HHHHHHHHHhHHHHHhhhh
Q 006179 238 EDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 238 EeEle~lr~~i~~LQsklR 256 (658)
++|+-.+++.+++.|.-.-
T Consensus 115 eqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 115 EQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 8888888888888776554
No 180
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.03 E-value=4.7e+02 Score=30.33 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhh--hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta--~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK 92 (658)
-.++|.++.+.--+|.+-|=++-.+|.+ .|-- .|--+=|.|.+||- +|+.+|..---+|
T Consensus 374 ~~~KI~~~k~r~~~Ls~RiLRv~ikqei------------lr~~G~~L~~~EE~Lr~Kld-------tll~~ln~Pnq~k 434 (508)
T KOG3091|consen 374 AVAKIEEAKNRHVELSHRILRVMIKQEI------------LRKRGYALTPDEEELRAKLD-------TLLAQLNAPNQLK 434 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhccCCcCCccHHHHHHHHH-------HHHHHhcChHHHH
Confidence 3445555555555555555554444433 2221 34445567777774 4555666667789
Q ss_pred HHHHHHHHHHHHhh
Q 006179 93 GQLADLHAAEVIKN 106 (658)
Q Consensus 93 ~qLadLh~ae~~Kn 106 (658)
..|+.|+-....+|
T Consensus 435 ~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 435 ARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999977666666
No 181
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=29.72 E-value=7.5e+02 Score=26.80 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh------------h-----HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRM------------G-----LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCH 294 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~------------G-----LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h 294 (658)
.=|.+|..+...+...++.+.--|.| | =+.|..|.+-+..++.-+.++.+.+.....-|+..-
T Consensus 71 ~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr 150 (384)
T PF03148_consen 71 EEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLR 150 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443 2 345677899999999888888888777766655332
Q ss_pred hhhHHHHHHhhhhcchhhhhhHHHHHhhh-ccccccccccccCCCccccccccccccceeeccCCCCccccCCC-CCCcc
Q 006179 295 SQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRN-DPAYC 372 (658)
Q Consensus 295 ~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~~~n~~~E~n~~~pq~e~~~~e~ec~dVhv~~d~~p~~~~k~~-~ps~~ 372 (658)
.-+. .+-.-+.+|. -+.+|. .+ ..+ .+.+.++...++ |...|+.. .|..-
T Consensus 151 ------------~ar~---~Le~Dl~dK~~A~~ID~---~~-------~~L-~~~S~~i~~~~~--~~r~~~~~~tp~~W 202 (384)
T PF03148_consen 151 ------------AARY---RLEKDLSDKFEALEIDT---QC-------LSL-NNNSTNISYKPG--STRIPKNSSTPESW 202 (384)
T ss_pred ------------HHHH---HHHHHHHHHHHHHHHHH---HH-------HhC-CCccCCCcccCC--cccccccCCChHHH
Confidence 1111 2223344454 333322 11 001 111233333332 22222222 22220
Q ss_pred hh-hhcccC--CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 006179 373 DI-EADRKG--EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDY 449 (658)
Q Consensus 373 ~~-~~d~~~--d~s~aLAqAL~EKveALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y 449 (658)
.. ..+.+. ..-.+-+..|++-|..++-=+... -.--=..||.+|.+.|.|.+.-..+....+-+++-|++.+...+
T Consensus 203 ~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~d-l~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i 281 (384)
T PF03148_consen 203 EEFSNENIQRAEKERQSSAQLREDIDSILEQTAND-LRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNI 281 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 00 011111 222233456667776554322221 12223468999999999999999999999999999999999999
Q ss_pred HHHHH
Q 006179 450 QLLQE 454 (658)
Q Consensus 450 ~lL~e 454 (658)
..|+.
T Consensus 282 ~~L~~ 286 (384)
T PF03148_consen 282 EDLEK 286 (384)
T ss_pred HHHHH
Confidence 99984
No 182
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=29.23 E-value=1.2e+02 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHH
Q 006179 90 RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (658)
Q Consensus 90 RiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmE 133 (658)
+++..+++.|...+ -..|+..=+.||.|-+.+.|.+.-.+++.
T Consensus 4 ~~~~~~~~~y~~~f-t~~El~~i~~FY~Sp~Gqk~~~~~~~~~~ 46 (64)
T PF09832_consen 4 KMIDQMAPIYAEHF-TEEELDAILAFYESPLGQKIVAKEPALMQ 46 (64)
T ss_dssp HHHHHHHHHHHHHS--HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CHHHHHHHHHHHCCHHhHHHHHHhHHHHH
Confidence 34556666665554 45688999999999999999877666665
No 183
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.22 E-value=3.3e+02 Score=25.54 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccc
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELK-KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA 220 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk-~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~ 220 (658)
...++++.+++..+.++++.+.++- +++..++...+.+..+.+-+-..|.-|++-.....- .+=++=|.-..
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~-------k~Ks~~l~~G~ 78 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELT-------KKKSLKLPFGT 78 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH------------EE-SS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcc-------cceEEEcCCee
Confidence 4556899999999999999987765 788888889999999999999999999887764432 33344444444
Q ss_pred cccccC
Q 006179 221 EMWSFN 226 (658)
Q Consensus 221 ~~Wsfn 226 (658)
..|.-.
T Consensus 79 v~~R~~ 84 (149)
T PF07352_consen 79 VGFRKS 84 (149)
T ss_dssp E-----
T ss_pred EEEEec
Confidence 445544
No 184
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=28.77 E-value=8.7e+02 Score=27.26 Aligned_cols=66 Identities=24% Similarity=0.458 Sum_probs=50.0
Q ss_pred HhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHH
Q 006179 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (658)
Q Consensus 124 FaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~K 192 (658)
|++-.+.+-+|...=+. |-.-+..|+..+..+.+++....+....|...|..++.-.+.+..+|+.
T Consensus 16 ~~~Lh~~i~~cd~~L~~---le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~ 81 (508)
T PF04129_consen 16 FADLHNQIQECDSILES---LEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDD 81 (508)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444456666655543 3455677889999999999999999999999999998887777777763
No 185
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=1.6e+02 Score=31.08 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 006179 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (658)
Q Consensus 16 ~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELs 86 (658)
.+++-+-..|-.-|-+|.++-=-|-. -+..+.|+=+. |-+++||||-.+|.+|...++-||-|.+|+.
T Consensus 50 ar~lS~~~~e~e~l~~~l~etene~~--~~neL~~ek~~-~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 50 ARALSQSQVELENLKADLRETENELV--KVNELKTEKEA-RQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555666667777665432211 23335566554 4468999999999999999999999999998
No 186
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.66 E-value=1.2e+03 Score=28.99 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=38.0
Q ss_pred hHHHHHHhHHhHHHHHHhhh-hhH--HHHHHHHHHHHHhhhhhHHHHHHhhhhcchhhh
Q 006179 258 GLEIENHLKKSVRELEKKII-HSD--KFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313 (658)
Q Consensus 258 GLeIenhLkk~vr~Lekkqi-~~d--k~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~ 313 (658)
-=+|-|||+..+-+|+|... .+. ..+.|-+.+|+..|..+-..--.+.+-+..-++
T Consensus 540 ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 540 KELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK 598 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998775 222 245678889988887765555445544444444
No 187
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=28.32 E-value=5.6e+02 Score=24.87 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA 96 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLa 96 (658)
|+-+||.|++..+..+.....+|-|-+.++. +++.++-
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie---~L~~el~ 62 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIE---TLEEELE 62 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 5556677777777666666666666555443 3444444
No 188
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.11 E-value=1.5e+02 Score=28.52 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=37.5
Q ss_pred hhhchhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHH
Q 006179 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLE----ELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYE 195 (658)
Q Consensus 125 aERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~----E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFye 195 (658)
.+||+.|-.-.+...--+.+-+++.+++.... +|+..+..++ ++.+|..-|......+. +.|-++++
T Consensus 37 ~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~-~~~ai~~al~~akakn~---~av~allD 107 (155)
T PF06810_consen 37 KEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK-KDSAIKSALKGAKAKNP---KAVKALLD 107 (155)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCH---HHHHHhcC
Confidence 34444444433322233344466666666666 6766666665 67777777777666665 44444443
No 189
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=27.91 E-value=78 Score=30.38 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=29.6
Q ss_pred hhhhhhchhhHHHHHhhhHHHH----HHHHHHHHHHHH
Q 006179 526 FARMRIENATLKESLENMDHLI----SSIRRLRLSLSK 559 (658)
Q Consensus 526 ~ARmKVENAtLkEsvesmehLT----SSiHRLrl~LlK 559 (658)
+.-+|-||..|||++.+|+-+- .+|+.||.-|-+
T Consensus 87 I~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 87 IEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3678999999999999999997 789999987754
No 190
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=27.88 E-value=6.4e+02 Score=25.75 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=64.1
Q ss_pred HHhhhhhhh---hcccccccccccccccccccccCCcch--HHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhH
Q 006179 195 EIRQQSLEV---LETSWEDKCACLLLDSAEMWSFNDTST--SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSV 269 (658)
Q Consensus 195 eiR~~~~e~---~~~s~~~Kc~~LL~ds~~~Wsfn~tst--skyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~v 269 (658)
|+|....-| .-+..+ .++-.=+...|..++..+ |.||+.|=++.......++.+-...++--++.+.|-..+
T Consensus 53 dLr~~iy~~~a~~~l~~~---~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~ 129 (234)
T PF10474_consen 53 DLREPIYKCVASRLLDLE---QILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRL 129 (234)
T ss_pred HHHHHHHHHHHHHHcCHH---HHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 566665544 112221 333334566799996544 999999999999999999887766666666666543322
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhHHH
Q 006179 270 RELEKKIIHSDKFISNAIAELRLCHSQLRVH 300 (658)
Q Consensus 270 r~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~ 300 (658)
=. ..-..++.|.+.++++-..-|+-
T Consensus 130 i~------~~~~~Lveg~s~vkKCs~eGRal 154 (234)
T PF10474_consen 130 IF------FAFETLVEGYSRVKKCSNEGRAL 154 (234)
T ss_pred HH------HHHHHHHHHHHhccCCChhhHHH
Confidence 11 34455678888888888877764
No 191
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.09 E-value=4e+02 Score=23.30 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
|...++.|+.++..+.+....|++.+++.=..|..|..+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466667777777777778888888887777777776
No 192
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.03 E-value=4.4e+02 Score=23.29 Aligned_cols=71 Identities=28% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 92 KGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 92 K~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (658)
...++.=+..=-.+..+++..+--|..-+-..=+.|..|+-.|++....-....+.+..+...+..+++.+
T Consensus 27 ~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 27 EEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445566666776676666666677777777777766544444444444444444444443
No 193
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.86 E-value=52 Score=28.23 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHh
Q 006179 236 ALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268 (658)
Q Consensus 236 aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~ 268 (658)
|.-||+|.||.+|..|+.+.+ -||.||.+.|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~-~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNS-QLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 456899999999999998876 48999987654
No 194
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.85 E-value=1.9e+02 Score=26.71 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=36.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006179 409 LERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453 (658)
Q Consensus 409 lE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~ 453 (658)
||.++.+.++. |++|...+..+-.|=+..=||-++|++-...+.
T Consensus 13 le~~l~~l~~~-~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 13 LEQQLGQLLEE-LEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777776 999999999999999999999999988776654
No 195
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.78 E-value=1.5e+02 Score=25.58 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 46 LAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 46 l~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
.++++-+....+..+..+++.++++......||.+|+=|.+.
T Consensus 26 ~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 26 SALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555557777788999999999999999999877653
No 196
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.65 E-value=5.8e+02 Score=24.47 Aligned_cols=85 Identities=15% Similarity=0.290 Sum_probs=46.0
Q ss_pred hhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006179 116 FQGCMAAAFAERDNSVMEAEKAKEKEELMSQKF-------NEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (658)
Q Consensus 116 fQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~-------~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~k 188 (658)
|=++|=.+|..|+....+.+-+...=..--+++ ..=..|+..+...+.+.++--..++.++.... +..++
T Consensus 119 ~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~ 195 (236)
T PF09325_consen 119 YIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS---ENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 334666789999999887665542111111111 11134555555555555555555555555543 33446
Q ss_pred HHHHHHHHhhhhhhh
Q 006179 189 VINKFYEIRQQSLEV 203 (658)
Q Consensus 189 VI~KFyeiR~~~~e~ 203 (658)
=+..|-.-|..+.-+
T Consensus 196 E~~rf~~~k~~d~k~ 210 (236)
T PF09325_consen 196 ELERFEKEKVKDFKS 210 (236)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777666543
No 197
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.44 E-value=5.9e+02 Score=24.53 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-----------hHHHHH-HhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHH
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRM-----------GLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRV 299 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~-----------GLeIen-hLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~ 299 (658)
.-++.|..+.+.|+..+++|.++|+- =+..+. ......+.++.|..-.+.=|...|++|+..--..|.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555554 222221 233334444444444444456666677766666666
Q ss_pred HHHHhh
Q 006179 300 HVVNSL 305 (658)
Q Consensus 300 ~Im~lL 305 (658)
.+++.+
T Consensus 153 ~~lr~~ 158 (177)
T PF07798_consen 153 DTLRWL 158 (177)
T ss_pred HHHHHH
Confidence 666543
No 198
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.30 E-value=1.2e+03 Score=27.91 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 94 QLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA--KEKEELMSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 94 qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEka--KE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
.||+=|.....+-+.+.+.+. .|.+.+..+..-+-+||+. +|. +.|..++..+..|++++...+..|++
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~----~vl~~l~~~~P~LS~AEr~~~~EL-~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVD----RVLQLLNSQLPVLSEAEREFKKEL-ERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554 2333444455555556543 333 35666777777777777776666554
No 199
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=26.22 E-value=6.6e+02 Score=24.98 Aligned_cols=65 Identities=26% Similarity=0.380 Sum_probs=38.2
Q ss_pred cccCCcc--hHHHHHHHHHHHHHHHHhHHHHHhhhhh-hHHHHHHhHHhHHHHHHhhh----hhHHHHHHHHHH
Q 006179 223 WSFNDTS--TSKYISALEDELEKTRSSVENLQSKLRM-GLEIENHLKKSVRELEKKII----HSDKFISNAIAE 289 (658)
Q Consensus 223 Wsfn~ts--tskyi~aLEeEle~lr~~i~~LQsklR~-GLeIenhLkk~vr~Lekkqi----~~dk~i~ngi~~ 289 (658)
++|.+|+ ....+.++++-++.+ -.++.+|+.++. +-||. --+++|++||+..| --=++|..-|.+
T Consensus 119 y~l~~t~~~~d~a~~~~~~~l~~l-i~lA~~e~~~~~L~~eI~-~T~RRVNALE~vvIP~l~~~ik~I~~~LeE 190 (209)
T TIGR00309 119 YGLLFTSYKVDEAAEIYEEAVELI-VELAEIETTIRLLAEEIE-ITKRRVNALEHVIIPRLKNTIKYINMRLDE 190 (209)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhH
Confidence 7776554 557777777666543 345555555543 33332 24899999999987 223444444444
No 200
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=26.18 E-value=46 Score=28.96 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhhh-hcccccccccccccccccccccC
Q 006179 191 NKFYEIRQQSLEV-LETSWEDKCACLLLDSAEMWSFN 226 (658)
Q Consensus 191 ~KFyeiR~~~~e~-~~~s~~~Kc~~LL~ds~~~Wsfn 226 (658)
.+||..=...+.. ..++++|=.-+|..-+.++|||+
T Consensus 46 ~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSFg 82 (82)
T PF14552_consen 46 KALYRALAERLAEKLGIRPEDVMIVLVENPREDWSFG 82 (82)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCCC
Confidence 3556555555544 78999999999999999999996
No 201
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.08 E-value=7.5e+02 Score=25.62 Aligned_cols=119 Identities=31% Similarity=0.372 Sum_probs=66.3
Q ss_pred cchHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchH
Q 006179 10 NESEALMARIQQLEHER-------DELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQ 82 (658)
Q Consensus 10 ~~~e~l~~rI~qLe~ER-------dEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQ 82 (658)
-..|.|.+|+...|-|+ .-|-+|+. .|++ ..=.||..||. .|+-||
T Consensus 16 ~skeel~~rLR~~E~ek~~~m~~~g~lm~evN---------------rrlQ-----~hl~EIR~LKe-------~NqkLq 68 (195)
T PF10226_consen 16 WSKEELVRRLRRAEAEKMSLMVEHGRLMKEVN---------------RRLQ-----QHLNEIRGLKE-------VNQKLQ 68 (195)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------HHHH-----HHHHHHHHHHH-------HHHHHH
Confidence 34678999999999884 44444433 3332 22346777776 566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 83 EELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 83 eELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (658)
+|=-|-.-+=--|.| +.-|-+.+..+---|=-.-| ++|- ..=..-.+|+.+++.|.+++-...
T Consensus 69 edNqELRdLCCFLDd----dRqKgrklarEWQrFGryta--------~vmr-----~eV~~Y~~KL~eLE~kq~~L~rEN 131 (195)
T PF10226_consen 69 EDNQELRDLCCFLDD----DRQKGRKLAREWQRFGRYTA--------SVMR-----QEVAQYQQKLKELEDKQEELIREN 131 (195)
T ss_pred HHHHHHHHHHcccch----hHHHhHHHhHHHHHhhhHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 665554433333333 33333434433333322222 2232 112234477888888888887777
Q ss_pred HHHHHhhHHH
Q 006179 163 IELKKQNATL 172 (658)
Q Consensus 163 ~~qk~~n~~L 172 (658)
.+.|++...|
T Consensus 132 ~eLKElcl~L 141 (195)
T PF10226_consen 132 LELKELCLYL 141 (195)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 202
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.87 E-value=1.4e+03 Score=28.65 Aligned_cols=137 Identities=24% Similarity=0.255 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 006179 18 RIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (658)
Q Consensus 18 rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLad 97 (658)
..+|-++++++-+-|-|||=-++| .--|+|-..+++-+|-+|+++-.- -+.|=.+.|.+.|. +|-.
T Consensus 373 ~~~e~q~~~qe~~~e~eqLr~ela----ql~a~r~q~eka~~~~ee~e~~~l-------~~e~ry~klkek~t---~l~~ 438 (980)
T KOG0980|consen 373 ELQEQQREAQENREEQEQLRNELA----QLLASRTQLEKAQVLVEEAENKAL-------AAENRYEKLKEKYT---ELRQ 438 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHH---HHHH
Confidence 334444567777777777766554 225677777777777555554221 12455667777773 5555
Q ss_pred HHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHh
Q 006179 98 LHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTR----LEELSSENIELKKQNATLR 173 (658)
Q Consensus 98 Lh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R----~~E~~s~~~~qk~~n~~LQ 173 (658)
-|..-+.|+.+.-||+--=|- ++.++++.+..-..++-++..-..| .++.....+..++--..|+
T Consensus 439 ~h~~lL~K~~di~kQle~~~~-----------s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~ 507 (980)
T KOG0980|consen 439 EHADLLRKYDDIQKQLESAEQ-----------SIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLL 507 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 677788888888888754332 2235555554444444444433333 3333333333333344444
Q ss_pred hhHHHH
Q 006179 174 FDLEKQ 179 (658)
Q Consensus 174 ~dl~~~ 179 (658)
.+++++
T Consensus 508 ~e~~~l 513 (980)
T KOG0980|consen 508 IELEEL 513 (980)
T ss_pred HHHHHH
Confidence 444444
No 203
>smart00338 BRLZ basic region leucin zipper.
Probab=25.35 E-value=2.8e+02 Score=22.49 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
+.+.+++.++..|++...+.......|+.++..++.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666655555555555555555443
No 204
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.23 E-value=1e+03 Score=26.78 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHhhhhhHHHHhhhhhHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRTAGLEQ 62 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCM-QQaGpgyl~vATrM~~qRta~LEQ 62 (658)
...++.-++..++.|++.|+..++.+=- ..--|.--+-..+|+.+..-.|..
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~e 162 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQE 162 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHH
Confidence 5677888899999999999999999721 122244445566787777633333
No 205
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.20 E-value=1.7e+02 Score=24.33 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
..+.+++..+++++.....+|..|+.|.+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888899999988764
No 206
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.15 E-value=1.5e+02 Score=23.66 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 59 ~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
.||+|-+.||..-.....+|..|+.|-.. +++++..|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~---L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEK---LRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 37888888888888888888888887654 56666555
No 207
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.03 E-value=1.3e+02 Score=27.22 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhh-----hHHHHHHhHHh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRM-----GLEIENHLKKS 268 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~-----GLeIenhLkk~ 268 (658)
|.+=+..|+-++..++-.++.+-.+|+- +|.+||+||++
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~lk~~ 106 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENELKKD 106 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444555555555555555555555543 79999998763
No 208
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=24.89 E-value=4.2e+02 Score=25.86 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=42.2
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 50 TrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
..++..+.+.|++.++..++++.++..-=...+.++.+|.|.+..+++|
T Consensus 76 v~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL 124 (152)
T PF07321_consen 76 VASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAEL 124 (152)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999888888899999999999887766
No 209
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.85 E-value=3.5e+02 Score=25.43 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q 006179 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 257 (658)
Q Consensus 224 sfn~tstskyi~aLEeEle~lr~~i~~LQsklR~ 257 (658)
.|+=.+..+...+||..+.....+|+.||..++-
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~ 52 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEK 52 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554567889999999999999999999987764
No 210
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.78 E-value=2.3e+02 Score=31.03 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQ 35 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEq 35 (658)
.+..++..|+++|+++.|.|-+
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888877765
No 211
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=24.55 E-value=6.6e+02 Score=24.43 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=26.7
Q ss_pred HHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (658)
Q Consensus 123 AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~ 164 (658)
.+|.|=+.+++ .|-+++.++|..+-..+.++...+.+
T Consensus 11 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 47 (196)
T PF01813_consen 11 KLAKRGHKLLK-----KKRDALIREFRKLIKEAEELREELEE 47 (196)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 77888888888887777777655533
No 212
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=24.12 E-value=88 Score=31.66 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
++..||.|-+.||.++....++|.-||.|..+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~e 137 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQE 137 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 57899999999999999999999999998765
No 213
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=23.93 E-value=1.1e+02 Score=27.60 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHH------HHHHhhhhhcchHHHH
Q 006179 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQ------KIAACARENSNLQEEL 85 (658)
Q Consensus 37 CMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkk------kl~~c~ren~nLQeEL 85 (658)
||...=.|-++.-+.+.-.. .+|..||+.|+. .+.-+.-||..|++|+
T Consensus 7 rLE~~~~g~l~~~~~~~~e~-~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 7 RLEKLLDGKLPSESYLEEEN-EALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred HHHHHhcCCCCccchhHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
No 214
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.90 E-value=4.9e+02 Score=22.70 Aligned_cols=79 Identities=29% Similarity=0.435 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hh------------c------------------CCch-----HhhhhhHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCM-QQ------------A------------------GPSY-----LAVATRMHF 54 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCM-QQ------------a------------------Gpgy-----l~vATrM~~ 54 (658)
..+.+.+++..|++..+++..=++.|.- +. + |.|| +.=|...+-
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~ 83 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLK 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHH
Confidence 3567889999999999998888888874 43 1 2222 233677888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 55 qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
.|...|+..++.+.+++......-..++..+++.|
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988888888888888877766
No 215
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=23.71 E-value=1e+02 Score=28.41 Aligned_cols=33 Identities=39% Similarity=0.639 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~ 93 (658)
.|+|-+-|.++++-.-.+|..|..||+. |+.++
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~k-yk~~~ 45 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNK-YKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 4788999999999999999999999998 76653
No 216
>PHA02047 phage lambda Rz1-like protein
Probab=23.57 E-value=3.3e+02 Score=25.64 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchhh
Q 006179 233 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHI 312 (658)
Q Consensus 233 yi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~i 312 (658)
|.-.-.++-+.+.++++.++-++ +|+++.|..|+.| -.++|.+|.+-|++..+|-
T Consensus 28 ~~g~~h~~a~~la~qLE~a~~r~-------~~~Q~~V~~l~~k------------------ae~~t~Ei~~aL~~n~~Wa 82 (101)
T PHA02047 28 ALGIAHEEAKRQTARLEALEVRY-------ATLQRHVQAVEAR------------------TNTQRQEVDRALDQNRPWA 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH------------------HHHHHHHHHHHHHhCCCcc
Confidence 33344667777888888776554 3788999998887 4578999999999999997
Q ss_pred hh
Q 006179 313 KS 314 (658)
Q Consensus 313 ~s 314 (658)
++
T Consensus 83 D~ 84 (101)
T PHA02047 83 DR 84 (101)
T ss_pred cC
Confidence 65
No 217
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.49 E-value=1.8e+02 Score=26.73 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI 91 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRi 91 (658)
.+.+..|-++|+.||+.+....-||..|+-|....++.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666778889999999999999999887765543
No 218
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.43 E-value=1.7e+02 Score=30.28 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcc
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~ 309 (658)
.+..|+.|..++|.+.+.++.|++..+=+ ++-.. -+.+...+..+| +-.++|...=-.|+.+|..+.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKk----k~~~~----~~~r~~~l~~~i-----erhk~Hi~kLE~lLR~L~N~~ 193 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKK----KKDST----KQERIEELESRI-----ERHKFHIEKLELLLRLLDNDE 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCcc----chhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 77899999999999999999999865432 11111 111111122222 224566666667888999998
Q ss_pred hhhhhhHHHHHhhhcc
Q 006179 310 SHIKSISDVIEEKTQH 325 (658)
Q Consensus 310 s~i~s~v~~ieekl~~ 325 (658)
..-.. |+.|.+-|+.
T Consensus 194 l~~e~-V~~ikediey 208 (233)
T PF04065_consen 194 LDPEQ-VEDIKEDIEY 208 (233)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 76644 4457777733
No 219
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.01 E-value=6.8e+02 Score=28.16 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVI 104 (658)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~ 104 (658)
+-++++-|+-.++.|+...+.-.-|++.|-.||+||.|.+..|++-|+|-+.
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~ 190 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFV 190 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444444554455555555555557899999999999999999998765543
No 220
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.98 E-value=2.4e+02 Score=22.87 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006179 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (658)
Q Consensus 420 ~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (658)
.|++|+..+..++.+-...-.++..|++++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999988888888888999999999998873
No 221
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.66 E-value=1.7e+03 Score=28.40 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=20.8
Q ss_pred hhhhhhchhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006179 526 FARMRIENATLKESLENMDHLISSIRRLRLSLSKV 560 (658)
Q Consensus 526 ~ARmKVENAtLkEsvesmehLTSSiHRLrl~LlKv 560 (658)
++|+|-.+...-+|+.-++-+-..-|-.|..+-|-
T Consensus 873 i~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~ 907 (1074)
T KOG0250|consen 873 IKRLKRQIQMCEESLGELEELHRGLHEARKELKKE 907 (1074)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhh
Confidence 45666666666666666666655555555554443
No 222
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=22.65 E-value=1.1e+03 Score=26.26 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=24.4
Q ss_pred hcCCchHhhhh--hHHHHhhhhhHHHHHHHHHH
Q 006179 40 QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQK 70 (658)
Q Consensus 40 QaGpgyl~vAT--rM~~qRta~LEQeiE~Lkkk 70 (658)
-+|-||=.||. |=++.||+.-=++|..+=..
T Consensus 391 E~GrGFAVVA~EVR~LA~~s~~at~~I~~~i~~ 423 (554)
T PRK15041 391 EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIED 423 (554)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789988885 77999999988888876543
No 223
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.59 E-value=6.6e+02 Score=28.92 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH
Q 006179 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177 (658)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~ 177 (658)
.+..++.+.++|+.++.++++.++..|..|+....
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677888888888888888888888877655433
No 224
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.51 E-value=3.8e+02 Score=23.89 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHH----HhhHHH---hhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 006179 150 EFQTRLEELSSENIELK----KQNATL---RFDLEKQEELNESFKEVINKFYEIRQQSLE 202 (658)
Q Consensus 150 ~~~~R~~E~~s~~~~qk----~~n~~L---Q~dl~~~~eq~e~~~kVI~KFyeiR~~~~e 202 (658)
.++.|+.+|+...--|. ++|++| |+.++++.+|.. -+++||-+++....+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr---~L~~kl~~~~~~~~~ 61 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR---LLTEKLKDLQPSAIA 61 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcccccC
Confidence 56777777777666554 456654 455555556655 889999888765443
No 225
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.20 E-value=3.7e+02 Score=29.05 Aligned_cols=49 Identities=29% Similarity=0.497 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHH
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 282 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~ 282 (658)
..+|++.|+++++.+.+.+++|..+|.-.= +.+++.+.++++...+++=
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~ 288 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKR 288 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHH
Confidence 349999999999999999999998764432 4455555555555544443
No 226
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=22.06 E-value=6.3e+02 Score=23.30 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=48.2
Q ss_pred HHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 006179 98 LHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (658)
Q Consensus 98 Lh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl 176 (658)
+|+...-.-..+.+++.=+|.-++..=+++|.+--+.+..+ ..-..+=..++..+.++++.+.+...+|.-|-..+
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566777777788888888888887766654333 33333444566666666667777777777664433
No 227
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.00 E-value=2.9e+02 Score=28.00 Aligned_cols=50 Identities=26% Similarity=0.204 Sum_probs=31.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 130 slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
|--|||..||.++ ...+...+.+++..+.+++..-..++.|...++..++
T Consensus 22 ~~~~~~~~~~~~~-----~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 22 SAEEAEELKEEPE-----DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred CHHHHHHHhhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467787777655 3344444555555555555566777888888777766
No 228
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.95 E-value=8.9e+02 Score=25.00 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 10 ~~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
+.+..|-+-|.-.+..-.-|..+|+-||-|-= -+.=..+.+..|+-|+|.||.-+...--+|..|+.+....=
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~-------s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLK-------SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777778888888875410 11233455556666666666544444444444433332222
Q ss_pred HHHHHHH----HH-----------------HHHH-HHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHH
Q 006179 90 RIKGQLA----DL-----------------HAAE-VIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK 147 (658)
Q Consensus 90 RiK~qLa----dL-----------------h~ae-~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk 147 (658)
|=...|. .| + .+ ..++..+-.||--|-+- +..||..+-
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~-~eL~~~~~~Lq~Ql~~~e~l----~~~~da~l~--------------- 154 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRS-KELATEKATLQRQLCEFESL----ICQRDAILS--------------- 154 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH-HHHHHhhHHHHHHHHHHHHH----HHHHHHHHH---------------
Confidence 2221111 11 0 11 13566666666444332 333444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 148 ~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
+-..++.+|...+.+..-....|..+...+++|.
T Consensus 155 --e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 155 --ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666677777778888887775
No 229
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.90 E-value=1.2e+02 Score=24.96 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhh
Q 006179 234 ISALEDELEKTRSSVENLQSKLRM 257 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQsklR~ 257 (658)
|++|.++++.|..++..||+.+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888887653
No 230
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.85 E-value=1.3e+03 Score=26.94 Aligned_cols=87 Identities=21% Similarity=0.207 Sum_probs=48.8
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006179 78 NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (658)
Q Consensus 78 n~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E 157 (658)
.+++|.+-..-||+.=- .+...|.=-|-+=|.++ ...+++| ++..++..|+=.
T Consensus 342 R~K~Q~q~~~~~r~ri~-------------~i~e~v~eLqk~~ad~~-------~KI~~~k-------~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 342 RLKVQDQEVKQHRIRIN-------------AIGERVTELQKHHADAV-------AKIEEAK-------NRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhhhHH-------HHHHHHH-------HHHHHHHHHHHH
Confidence 46778887777765411 11122222232333333 3455666 555556666655
Q ss_pred HHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 158 LSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 158 ~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
+=-...-++.-.++|+.|=+++.++.+-+.+++|
T Consensus 395 v~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 395 VMIKQEILRKRGYALTPDEEELRAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhc
Confidence 5445555666677777777777777776666554
No 231
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.83 E-value=3.4e+02 Score=30.95 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 18 RIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 18 rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
+|..||.+-.+|.+.|+.|=.+-+.|.+. +.--..+.+.|-++++.++++|..+..+=..|.++|.|+
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELY---DQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555555321 111122555666666666666666655555555555443
No 232
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.79 E-value=5.8e+02 Score=24.13 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 006179 141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRF 174 (658)
Q Consensus 141 Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~ 174 (658)
-++++.+++..++|+.|..+.+.-.|++|..+..
T Consensus 45 r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~ls 78 (111)
T PF12001_consen 45 RKSLSNKLNKTNERLAEVSTKLLVEKEQNRSLLS 78 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcccccc
Confidence 4678899999999999999999888887776543
No 233
>PRK13694 hypothetical protein; Provisional
Probab=21.53 E-value=3e+02 Score=25.10 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSY 45 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgy 45 (658)
..+.+.||..||.|...+.-||--+----.|-||
T Consensus 14 Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~Gf 47 (83)
T PRK13694 14 LRAFIERIERLEEEKKTISDDIKDVYAEAKGNGF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4578899999999999999999999888889999
No 234
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.48 E-value=7.6e+02 Score=24.02 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~ 93 (658)
-|-.-|.+++..-.++++.+-+..- .-+++-++-..++.+++.+.++...++.-+ .+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a----------~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~e---------- 83 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMA----------NQKRLERKLDEAEEEAEKWEKQAELALAAG---RE---------- 83 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CH----------
Confidence 3334455555555555555444322 123344444445555555555444444333 12
Q ss_pred HHHHHHHHHHHhhHHHHHhHhHhhhhhHHH
Q 006179 94 QLADLHAAEVIKNMEAEKQVKFFQGCMAAA 123 (658)
Q Consensus 94 qLadLh~ae~~Kn~e~EkqvkFfQs~vA~A 123 (658)
||-...+.+-.+++.++.-|+..++.+
T Consensus 84 ---dLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 84 ---DLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777777777655543
No 235
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.27 E-value=1.4e+03 Score=27.32 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHhhcC--CchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 006179 37 CMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (658)
Q Consensus 37 CMQQaG--pgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~q 94 (658)
|.+.+| |..|.-|-+++......++.-|+.|..+....-.....+...+.++-+.+..
T Consensus 488 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 488 IAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE 547 (771)
T ss_pred HHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 4445566666666666666666666654444333333333333333333333
No 236
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.07 E-value=1.5e+02 Score=24.77 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHhHHHHHhh
Q 006179 228 TSTSKYISALEDELEKTRSSVENLQSK 254 (658)
Q Consensus 228 tstskyi~aLEeEle~lr~~i~~LQsk 254 (658)
+++++-|+.|+.|+..|++++..+|+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999998863
No 237
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.00 E-value=7e+02 Score=25.65 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=65.6
Q ss_pred HHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 006179 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (658)
Q Consensus 121 A~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 200 (658)
.+.|+.-...=||.-+.| .++++++.++...+.....- +..-+.+.+..+.|.|-+++ |--++
T Consensus 85 gTdfS~~~~~dwEevrLk-------rELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~-----YK~~q-- 147 (195)
T PF12761_consen 85 GTDFSATEGTDWEEVRLK-------RELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD-----YKERQ-- 147 (195)
T ss_pred CCCCCCCCCCchHHHHHH-------HHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH-----HHHHH--
Confidence 566776666678877777 88999999999887766442 22334455666667664443 22222
Q ss_pred hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHH
Q 006179 201 LEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 274 (658)
Q Consensus 201 ~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lek 274 (658)
|.+... +..+.+.=+.++.+.++.++.+|+-| |+||..+-.+|++
T Consensus 148 ---------------l~~~~~----~~~~~~~~l~~v~~Dl~~ie~QV~~L----------e~~L~~k~~eL~~ 192 (195)
T PF12761_consen 148 ---------------LRELEE----GRSKSGKNLKSVREDLDTIEEQVDGL----------ESHLSSKKQELQQ 192 (195)
T ss_pred ---------------HHhhhc----cCCCCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 111111 22223445677777888887777765 4677777666664
No 238
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=20.86 E-value=3.3e+02 Score=32.26 Aligned_cols=62 Identities=21% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCcccccccCcchhh
Q 006179 421 IEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRL 483 (658)
Q Consensus 421 ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~~~~~~k~~~~~~~~~~r~i~~~e~~g~l 483 (658)
=+|+++-..++..-|.+-.=||++||++.|.|++-+++...+. .++....++.....++|..
T Consensus 14 ~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~-r~~s~~~~r~~~~~~~~~~ 75 (654)
T PF09798_consen 14 QKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNEL-RSLSSSKRRKNVSSPSGTN 75 (654)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhccccccccccc
Confidence 3455555556666677778899999999999998777888776 4445555554444444443
No 239
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=20.85 E-value=1.6e+02 Score=30.17 Aligned_cols=43 Identities=28% Similarity=0.465 Sum_probs=34.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHH---------HhhhhhcchHHHHHHHHHHHHHHH
Q 006179 52 MHFQRTAGLEQEIEILKQKIA---------ACARENSNLQEELSEAYRIKGQLA 96 (658)
Q Consensus 52 M~~qRta~LEQeiE~Lkkkl~---------~c~ren~nLQeELsEAYRiK~qLa 96 (658)
=-|..+..|++|.+++|++|+ |.+=.+.|+-|+ |||+.=+.+|
T Consensus 122 srf~~~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~--EAy~~lR~~A 173 (194)
T COG3707 122 SRFEERRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEE--EAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 357888999999999999997 456677888875 8999877666
No 240
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=20.74 E-value=4.2e+02 Score=23.45 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhh--hhhh---hccccccccccccccc
Q 006179 157 ELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQ--SLEV---LETSWEDKCACLLLDS 219 (658)
Q Consensus 157 E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~--~~e~---~~~s~~~Kc~~LL~ds 219 (658)
+.++-..+..++...|+..+...++.-... .-+.+||-=... +.+. .++..+.+|+||=-|.
T Consensus 4 eme~~y~~~~~~l~~le~~l~~~~~~~~~~-~~L~~YY~s~~w~~d~e~~e~g~~~~~~~~gVLSEDa 70 (90)
T PF14131_consen 4 EMEKIYNEWCELLEELEEALEKWQEAQPDY-RKLRDYYGSEEWMEDYEASEQGDLPTDGKCGVLSEDA 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCcHhHHHHHHHHhCCCCCCCcccCccCchH
Confidence 333333333344444444444444443333 334457721111 1111 4577788999986554
No 241
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.63 E-value=8.4e+02 Score=26.65 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGP 43 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGp 43 (658)
+..+-.++.-++++.=.++..-=.++.||
T Consensus 52 i~~~A~~~~~~~~eYv~~l~kaL~~~~~~ 80 (342)
T PF06632_consen 52 IRQRAKDWDMEVEEYVQELKKALTGQQQP 80 (342)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Confidence 44455666667777766666665555555
No 242
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.53 E-value=1.2e+02 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=28.8
Q ss_pred ccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 214 ~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQs 253 (658)
.++...-+.||+.+ ...||+.|+.|...+++.+++-+.
T Consensus 12 ~~ig~dLs~lSv~E--L~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 12 HEIGEDLSLLSVEE--LEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred cccCCCchhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777775 468999999999999988876543
No 243
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.51 E-value=9.9e+02 Score=24.97 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHhhhhh----HHHHHHHHHHHHHhhh----hhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHh
Q 006179 54 FQRTAGL----EQEIEILKQKIAACAR----ENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA 125 (658)
Q Consensus 54 ~qRta~L----EQeiE~Lkkkl~~c~r----en~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFa 125 (658)
|++...| |.++..==..+++|.. .-..+-..|.+.| =..|.|. |.|.++ +=..|.
T Consensus 94 fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f--~~~Lkey--------------v~y~~s-lK~vlk 156 (243)
T cd07666 94 YGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQL--LPVIHEY--------------VLYSET-LMGVIK 156 (243)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--------------HHHHHH-HHHHHH
Confidence 4444444 6655554444555544 5555555555522 1222222 444444 445888
Q ss_pred hhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHh
Q 006179 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (658)
Q Consensus 126 ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq 182 (658)
+||..=.+-|+..|....--+.-.++...+++++..++. -|.++..|++.-+++
T Consensus 157 ~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~---a~~~~k~e~~Rf~~~ 210 (243)
T cd07666 157 RRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVEC---ANNALKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 998777776666544333222112333334433333322 144455565555443
No 244
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=20.49 E-value=2.8e+02 Score=29.07 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhhhcchh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSH 311 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ee~s~ 311 (658)
+||++||.+.+.--+. .--|+.+-+- .|+ -++..+|.+=+ .-|.|++.-.+.++.-.- |-+|..+|+..
T Consensus 32 ~~I~eLe~~~~~~~~~-~D~e~~~~~~-~~e-t~~~~~r~ifq--rR~~Kiv~~A~~~~~~~~------~~~Lt~eEk~l 100 (223)
T COG1711 32 SFIKELEDEAGRAEEA-RDIEKYLLTD-RIE-TAKSDARSIFQ--RRYGKIVSRAIYDVPGET------ISNLTPEEKEL 100 (223)
T ss_pred HHHHHHHHHhhccccc-cCHHHHHHHH-HHH-HHHHHHHHHHH--HHHHHHHHHHHHhccccc------hhcCCHHHHHH
Confidence 7899999888665443 2222222222 111 12333333222 256788888777765432 88899999999
Q ss_pred hhhhHHHHHhhh
Q 006179 312 IKSISDVIEEKT 323 (658)
Q Consensus 312 i~s~v~~ieekl 323 (658)
+..+++.|++--
T Consensus 101 y~~l~~~I~~e~ 112 (223)
T COG1711 101 YEDLVNFIEDER 112 (223)
T ss_pred HHHHHHHHhhch
Confidence 999999988654
No 245
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=20.38 E-value=5.5e+02 Score=28.50 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcC---CchHhhhhh
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQ--QAG---PSYLAVATR 51 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQ--QaG---pgyl~vATr 51 (658)
..|-+..+.+.|.||-.||--.+|+|-.= .|- -.|+.+|+-
T Consensus 88 ~kETp~qK~qRll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~v 133 (371)
T KOG3958|consen 88 VKETPQQKYQRLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKV 133 (371)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHH
Confidence 35667888999999999999999998543 111 356666653
No 246
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.36 E-value=8.9e+02 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
.++.+++++.+.|++.+.+.+.-...++-||..+....+
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888887777777777777777766655444
No 247
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=20.35 E-value=8.4e+02 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=26.2
Q ss_pred HhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (658)
Q Consensus 124 FaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~ 164 (658)
.|.|=..+++ .|.+++..+|..+-..+.++...+.+
T Consensus 22 ~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 22 LAERGHKLLK-----DKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666 78888888888888888877666543
No 248
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.17 E-value=1.4e+02 Score=24.43 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 006179 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (658)
Q Consensus 61 EQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~ 93 (658)
|-|-|-||+=-...+.||..||.|+.|-.++|.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 446677888888889999999999999887764
No 249
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.13 E-value=2.7e+02 Score=25.45 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006179 150 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (658)
Q Consensus 150 ~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI 190 (658)
.++.|+.+++.++..+.+-|..|+..+..-.+.-..+++++
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999999999888877666655555543
No 250
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.06 E-value=5.7e+02 Score=22.00 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 006179 59 GLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (658)
Q Consensus 59 ~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYR 90 (658)
.||+++..|+.+|...+|.|...+.++..--+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998888877766554433
No 251
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.04 E-value=7.7e+02 Score=24.73 Aligned_cols=67 Identities=28% Similarity=0.485 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhchH-----HHHHHHHHhhhHH------HHHHHHHHHHhhhhhhh-------HHHHHHHHHHHHHHHH
Q 006179 388 QALQEKVAALLLLSQQ-----EERHLLERNVNSA------LQKKIEELQRNLFQVTT-------EKVKALMELAQLKQDY 449 (658)
Q Consensus 388 qAL~EKveALlLlSQq-----eER~llE~~~n~~------Lq~~ieeLqrnl~QVt~-------EKVkaLmELAqLkq~y 449 (658)
++|+.-+.=||-+-.. +++-.+|..+... +..+|.+|+++|.+... +|...=+|+++|+-++
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556655443 3444555555544 55566666666666555 4677778899998888
Q ss_pred HHHHH
Q 006179 450 QLLQE 454 (658)
Q Consensus 450 ~lL~e 454 (658)
..+++
T Consensus 169 ~~l~~ 173 (190)
T PF05266_consen 169 EALKE 173 (190)
T ss_pred HHHHH
Confidence 88876
Done!