Query 006179
Match_columns 658
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 93.2 4.1 0.00014 35.7 34.5 23 14-36 3-25 (284)
2 3oja_B Anopheles plasmodium-re 91.4 1.5 5.2E-05 45.1 11.9 64 135-198 526-589 (597)
3 1i84_S Smooth muscle myosin he 90.2 0.99 3.4E-05 51.9 10.1 8 316-323 1153-1160(1184)
4 1c1g_A Tropomyosin; contractIl 86.7 16 0.00053 32.0 34.0 24 14-37 10-33 (284)
5 3s4r_A Vimentin; alpha-helix, 85.9 2.9 0.0001 35.8 8.0 65 11-87 17-81 (93)
6 3tnu_B Keratin, type II cytosk 85.8 10 0.00034 33.5 11.7 77 146-262 36-118 (129)
7 3oja_B Anopheles plasmodium-re 85.8 15 0.00053 37.7 14.7 38 146-183 544-581 (597)
8 2fxo_A Myosin heavy chain, car 83.9 22 0.00077 31.4 15.5 108 56-191 14-121 (129)
9 2efr_A General control protein 83.8 29 0.00098 32.6 20.7 146 18-197 1-146 (155)
10 3vkg_A Dynein heavy chain, cyt 82.7 1E+02 0.0035 40.2 22.6 24 46-69 1901-1924(3245)
11 3tnu_A Keratin, type I cytoske 82.6 11 0.00037 33.5 10.4 77 146-262 38-120 (131)
12 3o0z_A RHO-associated protein 81.8 6.2 0.00021 37.6 9.1 77 14-96 52-138 (168)
13 3o0z_A RHO-associated protein 80.7 41 0.0014 32.1 18.4 125 134-295 29-153 (168)
14 1fxk_A Prefoldin; archaeal pro 78.3 12 0.00042 30.9 8.8 84 143-255 5-88 (107)
15 2dfs_A Myosin-5A; myosin-V, in 77.6 73 0.0025 37.1 17.7 30 58-87 924-953 (1080)
16 2dfs_A Myosin-5A; myosin-V, in 76.8 56 0.0019 38.0 16.5 14 25-38 961-974 (1080)
17 3ol1_A Vimentin; structural ge 76.7 39 0.0013 29.7 12.3 53 60-112 18-70 (119)
18 2zqm_A Prefoldin beta subunit 76.5 16 0.00055 30.6 9.2 85 142-255 9-93 (117)
19 1go4_E MAD1 (mitotic arrest de 76.1 7.9 0.00027 34.3 7.3 29 11-39 13-41 (100)
20 1deq_A Fibrinogen (alpha chain 73.0 9.4 0.00032 40.5 8.2 39 258-296 104-142 (390)
21 2zqm_A Prefoldin beta subunit 71.4 16 0.00054 30.6 7.9 77 13-89 23-111 (117)
22 3hnw_A Uncharacterized protein 66.3 29 0.00098 31.6 9.0 31 132-162 103-133 (138)
23 1am9_A Srebp-1A, protein (ster 65.4 7.9 0.00027 32.1 4.7 53 189-255 21-73 (82)
24 1nkp_A C-MYC, MYC proto-oncoge 64.3 9.7 0.00033 32.1 5.1 54 188-253 20-73 (88)
25 1m1j_B Fibrinogen beta chain; 63.2 54 0.0019 35.3 11.7 49 230-278 91-139 (464)
26 4h22_A Leucine-rich repeat fli 63.2 45 0.0015 29.8 9.3 60 125-184 23-82 (103)
27 2b5u_A Colicin E3; high resolu 63.1 1E+02 0.0036 34.0 13.9 50 72-131 317-376 (551)
28 1hlo_A Protein (transcription 62.2 9.6 0.00033 31.1 4.6 53 188-253 26-78 (80)
29 1fxk_A Prefoldin; archaeal pro 61.3 26 0.0009 28.9 7.2 74 13-86 18-103 (107)
30 1nkp_B MAX protein, MYC proto- 61.1 13 0.00045 30.4 5.2 53 189-254 17-69 (83)
31 2ke4_A CDC42-interacting prote 60.9 25 0.00087 30.6 7.2 71 12-98 10-88 (98)
32 2v4h_A NF-kappa-B essential mo 58.1 23 0.00079 32.0 6.6 66 12-81 40-109 (110)
33 3etw_A Adhesin A; antiparallel 58.0 1.1E+02 0.0036 27.9 11.0 37 56-98 10-46 (119)
34 2v66_B Nuclear distribution pr 55.5 1.2E+02 0.004 27.3 13.4 63 53-115 8-74 (111)
35 3na7_A HP0958; flagellar bioge 55.4 1.5E+02 0.005 28.5 17.6 57 15-88 16-72 (256)
36 1l8d_A DNA double-strand break 54.9 40 0.0014 28.3 7.3 50 37-86 53-102 (112)
37 3mtu_A Tropomyosin alpha-1 cha 54.5 12 0.00043 30.9 4.1 32 10-42 16-51 (75)
38 3ghg_A Fibrinogen alpha chain; 50.9 16 0.00056 40.2 5.4 80 242-325 67-150 (562)
39 3mq9_A Bone marrow stromal ant 50.7 40 0.0014 34.0 7.9 57 382-441 370-432 (471)
40 1zme_C Proline utilization tra 48.6 17 0.00057 27.8 3.7 27 230-256 42-68 (70)
41 1m1j_A Fibrinogen alpha subuni 48.5 48 0.0017 36.1 8.3 45 258-302 102-146 (491)
42 1nlw_A MAD protein, MAX dimeri 48.0 22 0.00076 29.6 4.6 56 188-255 15-70 (80)
43 1wt6_A Myotonin-protein kinase 47.9 82 0.0028 27.2 8.1 65 121-185 2-70 (81)
44 1l8d_A DNA double-strand break 47.4 46 0.0016 27.9 6.5 24 232-255 64-87 (112)
45 3swk_A Vimentin; cytoskeleton, 47.3 51 0.0017 27.8 6.8 65 63-127 1-65 (86)
46 3vkg_A Dynein heavy chain, cyt 46.7 6.4E+02 0.022 33.3 20.3 100 137-237 2026-2128(3245)
47 2v71_A Nuclear distribution pr 46.6 2.1E+02 0.0072 27.6 15.5 25 232-256 88-112 (189)
48 1ic2_A Tropomyosin alpha chain 45.8 1.2E+02 0.0042 24.8 9.9 54 132-185 13-66 (81)
49 3s4r_A Vimentin; alpha-helix, 44.0 55 0.0019 28.0 6.5 43 412-454 49-91 (93)
50 3hnw_A Uncharacterized protein 43.2 84 0.0029 28.6 8.0 30 57-86 105-134 (138)
51 1t2k_D Cyclic-AMP-dependent tr 41.8 80 0.0028 24.6 6.7 47 408-454 5-57 (61)
52 2wt7_A Proto-oncogene protein 41.3 76 0.0026 25.1 6.5 47 408-454 6-58 (63)
53 3etv_A Protein transport prote 40.0 67 0.0023 33.8 7.6 24 13-36 12-35 (355)
54 2jo8_A Serine/threonine-protei 38.9 56 0.0019 26.1 5.3 39 268-306 11-49 (51)
55 3swy_A Cyclic nucleotide-gated 37.3 81 0.0028 24.6 5.9 40 236-275 2-45 (46)
56 2v71_A Nuclear distribution pr 36.8 3E+02 0.01 26.6 18.3 49 248-296 90-138 (189)
57 4avm_A Bridging integrator 2; 35.2 3E+02 0.01 26.1 13.0 27 11-37 34-60 (237)
58 1joc_A EEA1, early endosomal a 35.0 1.3E+02 0.0043 26.6 7.6 51 126-176 5-55 (125)
59 2wt7_A Proto-oncogene protein 34.8 91 0.0031 24.6 6.0 38 153-190 23-60 (63)
60 1ic2_A Tropomyosin alpha chain 34.5 1.9E+02 0.0065 23.7 8.9 65 14-88 3-67 (81)
61 2akf_A Coronin-1A; coiled coil 34.3 19 0.00065 26.4 1.8 22 234-255 1-22 (32)
62 1ytz_T Troponin T; muscle, THI 33.7 1.2E+02 0.0042 26.8 7.3 45 381-431 45-89 (107)
63 3u1c_A Tropomyosin alpha-1 cha 33.3 2.3E+02 0.0078 24.2 9.1 67 12-88 4-70 (101)
64 1ci6_A Transcription factor AT 33.2 78 0.0027 25.2 5.4 37 154-190 24-60 (63)
65 2pms_C Pneumococcal surface pr 32.7 2.4E+02 0.0081 26.0 9.1 42 143-184 10-61 (125)
66 1t2k_D Cyclic-AMP-dependent tr 32.3 94 0.0032 24.2 5.7 35 155-189 24-58 (61)
67 1fxk_C Protein (prefoldin); ar 31.9 2.5E+02 0.0084 24.2 9.6 79 11-89 16-129 (133)
68 1f5n_A Interferon-induced guan 30.5 1.7E+02 0.0058 31.9 9.2 54 114-167 463-522 (592)
69 1j1d_B Troponin T, TNT; THIN f 30.2 99 0.0034 27.4 6.1 44 382-431 46-89 (106)
70 2jee_A YIIU; FTSZ, septum, coi 30.1 1.4E+02 0.0047 25.7 6.7 15 441-455 56-70 (81)
71 3m91_A Proteasome-associated A 29.6 1.5E+02 0.0052 23.4 6.4 42 152-193 8-49 (51)
72 3t98_B Nucleoporin NUP58/NUP45 29.4 2E+02 0.0067 24.9 7.7 57 144-200 10-74 (93)
73 2fxo_A Myosin heavy chain, car 29.3 2.9E+02 0.01 24.2 15.5 40 145-184 82-121 (129)
74 3i00_A HIP-I, huntingtin-inter 29.3 2.1E+02 0.0071 25.7 8.1 87 64-167 17-113 (120)
75 3cvf_A Homer-3, homer protein 28.9 2.6E+02 0.0091 23.8 8.2 50 147-199 21-70 (79)
76 4ati_A MITF, microphthalmia-as 28.7 25 0.00084 31.1 2.0 69 189-274 42-112 (118)
77 1lrz_A FEMA, factor essential 27.3 1.6E+02 0.0056 29.7 8.0 54 230-284 245-298 (426)
78 3u59_A Tropomyosin beta chain; 26.7 2.9E+02 0.01 23.3 9.3 54 132-185 16-69 (101)
79 3zx6_A HAMP, methyl-accepting 26.4 4.8E+02 0.016 25.7 13.0 30 40-69 178-209 (341)
80 3r6n_A Desmoplakin; spectrin r 25.8 6.1E+02 0.021 26.7 32.5 239 11-302 3-252 (450)
81 1sum_B Phosphate transport sys 25.6 3.9E+02 0.013 24.4 14.4 29 11-39 37-65 (235)
82 3ghg_C Fibrinogen gamma chain; 25.2 6.4E+02 0.022 26.9 12.1 100 221-329 14-142 (411)
83 3vmx_A Voltage-gated hydrogen 25.1 78 0.0027 25.1 4.0 26 11-36 12-37 (48)
84 3swf_A CGMP-gated cation chann 24.9 1.4E+02 0.0047 25.4 5.7 42 236-277 4-49 (74)
85 1f5n_A Interferon-induced guan 24.8 7.1E+02 0.024 27.2 12.9 33 134-166 507-539 (592)
86 2ve7_A Kinetochore protein HEC 24.5 75 0.0026 31.9 4.8 22 206-227 255-277 (315)
87 3ghg_B Fibrinogen beta chain; 24.3 2.1E+02 0.0072 31.0 8.4 64 212-276 63-132 (461)
88 1g6u_A Domain swapped dimer; d 23.9 72 0.0025 24.9 3.5 26 232-257 20-45 (48)
89 2d1l_A Metastasis suppressor p 23.9 5E+02 0.017 25.8 10.5 66 232-300 120-201 (253)
90 2oqq_A Transcription factor HY 23.5 1.7E+02 0.0059 22.7 5.5 34 232-266 3-36 (42)
91 3d5a_X RF1, peptide chain rele 23.2 1.4E+02 0.0047 31.3 6.6 95 144-258 1-95 (354)
92 3ssb_C IMPI alpha, inducible m 23.2 22 0.00075 27.2 0.5 15 344-358 20-34 (40)
93 1sig_A Sigma70, RNA polymerase 23.1 2E+02 0.0069 28.1 7.5 67 11-77 156-241 (339)
94 1jnm_A Proto-oncogene C-JUN; B 23.0 78 0.0027 24.8 3.7 36 153-188 22-57 (62)
95 1p9i_A Cortexillin I/GCN4 hybr 23.0 1E+02 0.0035 22.3 3.9 26 230-255 4-29 (31)
96 1hjb_A Ccaat/enhancer binding 22.2 2E+02 0.0069 24.6 6.4 34 148-188 38-71 (87)
97 3u1c_A Tropomyosin alpha-1 cha 22.1 3.7E+02 0.013 22.9 9.3 52 133-184 17-68 (101)
98 3ra3_A P1C; coiled coil domain 21.7 45 0.0015 23.7 1.8 22 234-255 2-23 (28)
99 1a93_B MAX protein, coiled coi 21.5 88 0.003 23.3 3.4 22 155-176 9-30 (34)
100 3a7o_A Autophagy protein 16; c 21.5 1.2E+02 0.0041 25.9 4.7 35 231-265 17-64 (75)
101 1gu4_A CAAT/enhancer binding p 21.2 1.9E+02 0.0066 24.3 5.9 34 146-179 36-69 (78)
102 3mq7_A Bone marrow stromal ant 20.8 2.4E+02 0.0082 25.9 6.8 48 408-456 61-108 (121)
103 1joc_A EEA1, early endosomal a 20.6 2.8E+02 0.0097 24.3 7.2 32 51-89 7-38 (125)
104 2lw1_A ABC transporter ATP-bin 20.5 3.3E+02 0.011 22.5 7.2 55 16-74 21-75 (89)
105 1jnm_A Proto-oncogene C-JUN; B 20.5 1.3E+02 0.0045 23.5 4.6 34 420-453 23-56 (62)
106 3ghg_A Fibrinogen alpha chain; 20.5 9.2E+02 0.031 26.9 13.4 42 150-191 114-155 (562)
107 2dq0_A Seryl-tRNA synthetase; 20.5 2.6E+02 0.009 29.4 8.1 23 14-36 42-64 (455)
108 2er8_A Regulatory protein Leu3 20.4 48 0.0016 25.5 2.0 25 229-253 46-70 (72)
109 3nmd_A CGMP dependent protein 20.2 2.7E+02 0.0092 23.5 6.6 25 149-173 36-60 (72)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=93.15 E-value=4.1 Score=35.67 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQL 36 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqL 36 (658)
.+..++..|+++.+.+...++.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 45556666666666666655554
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.43 E-value=1.5 Score=45.12 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 006179 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (658)
Q Consensus 135 EkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~ 198 (658)
.+.++..++.-+++..+++..++++..++++|+.-..++.+.+..+.+...+.+.+++=|+-|.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3344444555566777778888888888888888888888888888888888888888777775
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.17 E-value=0.99 Score=51.91 Aligned_cols=8 Identities=0% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhhh
Q 006179 316 SDVIEEKT 323 (658)
Q Consensus 316 v~~ieekl 323 (658)
+..+.++|
T Consensus 1153 le~L~~~I 1160 (1184)
T 1i84_S 1153 LEALKTEL 1160 (1184)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.72 E-value=16 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLC 37 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLC 37 (658)
++..+|..+....++|..+++.+-
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 5
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.95 E-value=2.9 Score=35.82 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
--++.+.+|..||.+--.|..+|++++-+ ||+ ++. .-.|.+|+.|++++...+.+|..|+-|+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~--~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQ--GKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999999999998633 432 222 125888999999999999999998887754
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.83 E-value=10 Score=33.48 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccc
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsf 225 (658)
..+.++...+..++..+..++.+|..|...++..+.+-+.-++-
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~------------------------------------ 79 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD------------------------------------ 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 45777777888888888888888888888777766554411110
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 006179 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (658)
Q Consensus 226 n~tstskyi~aLEeEle~lr~~i~~LQs------klR~GLeIe 262 (658)
...-|+.||.++..+|..+...-. +++++|++|
T Consensus 80 ----~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~E 118 (129)
T 3tnu_B 80 ----ARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235688899999999888776432 344555554
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.79 E-value=15 Score=37.73 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhh
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~ 183 (658)
++..+++.++++.+....+.++.+..+-.++..+++.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666666666666666666666666665544
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.92 E-value=22 Score=31.41 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=63.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaE 135 (658)
-.+.++.+|..|+.++.........|.+.....--=|..|... +. +|+++. -+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e-- 66 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-AD-- 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-Hh--
Confidence 3456777788888877666555555554443333333333222 11 233331 12
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 136 kaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
+.|+-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+=|+
T Consensus 67 -~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 67 -AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244455556666777777777777777777777777777777777666655544
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.82 E-value=29 Score=32.55 Aligned_cols=146 Identities=21% Similarity=0.301 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 006179 18 RIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (658)
Q Consensus 18 rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLad 97 (658)
||.+||..-.+...|-+.-+- -| +| +|.+++.-..++.....-...|.++|--+-+--..|--
T Consensus 1 r~~~lE~qlkeaae~ad~Kye--------Ev-aR--------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~ 63 (155)
T 2efr_A 1 RMKQLEDKVEELLSKNYHLEN--------EV-AR--------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEA 63 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--------HH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHH--------HH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 456666666665444444332 22 23 88999988888888888888888888876654333433
Q ss_pred HHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHH
Q 006179 98 LHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177 (658)
Q Consensus 98 Lh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~ 177 (658)
--...--+-...|.|+|+.+... -||| -+.+..-..++.++.-+..++-.+...|.-+..++.+|.
T Consensus 64 seekasqrEd~yEeqIk~L~~kL-----------KEAE---~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 64 QAEKYSQKEDKYEEEIKVLSDKL-----------KEAE---TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777888776543 2222 222333345555666666666666666766777766665
Q ss_pred HHHHhhHhHHHHHHHHHHHh
Q 006179 178 KQEELNESFKEVINKFYEIR 197 (658)
Q Consensus 178 ~~~eq~e~~~kVI~KFyeiR 197 (658)
.--.. +..+--|||.+-
T Consensus 130 ~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 130 QLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHH---HHHHHHHHHHHH
T ss_pred HHHHH---HHhcccchHHHH
Confidence 32222 223456777764
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.75 E-value=1e+02 Score=40.23 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=17.5
Q ss_pred HhhhhhHHHHhhhhhHHHHHHHHH
Q 006179 46 LAVATRMHFQRTAGLEQEIEILKQ 69 (658)
Q Consensus 46 l~vATrM~~qRta~LEQeiE~Lkk 69 (658)
|.....++.++...++..++.|+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888777777764
No 11
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.60 E-value=11 Score=33.48 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccccc
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsf 225 (658)
..+.++..++..++..+..++.+|..|...++..+.+.+.-++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~------------------------------------- 80 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA------------------------------------- 80 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 4577777788888888888888888888777777665441110
Q ss_pred CCcchHHHHHHHHHHHHHHHHhHHHHHh------hhhhhHHHH
Q 006179 226 NDTSTSKYISALEDELEKTRSSVENLQS------KLRMGLEIE 262 (658)
Q Consensus 226 n~tstskyi~aLEeEle~lr~~i~~LQs------klR~GLeIe 262 (658)
....-|+.||.++..+|..+...-. +++++|++|
T Consensus 81 ---~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~E 120 (131)
T 3tnu_A 81 ---QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQE 120 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0335688999999999888776433 344555554
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.83 E-value=6.2 Score=37.63 Aligned_cols=77 Identities=26% Similarity=0.312 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHH----------HhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF----------QRTAGLEQEIEILKQKIAACARENSNLQE 83 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~----------qRta~LEQeiE~Lkkkl~~c~ren~nLQe 83 (658)
-|-.++..|+..|+.|.+|+-+|=-| |.-=.|... -|..+|+.|++.++..+.....||..|||
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999776443 222222222 37889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006179 84 ELSEAYRIKGQLA 96 (658)
Q Consensus 84 ELsEAYRiK~qLa 96 (658)
-++.-=.=|+-+.
T Consensus 126 kl~~lEKe~a~~e 138 (168)
T 3o0z_A 126 MLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9987655554443
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.67 E-value=41 Score=32.15 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=86.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccc
Q 006179 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (658)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~ 213 (658)
+.|.|...-.+....+.++.-++|++..+.-.....+.|+.+++.+..+++. |-|.++.-- ++.
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~s-e~~------ 92 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHDS-EMI------ 92 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH-HHH------
Confidence 4466666677888889999999999999999999999999999999888872 122211110 000
Q ss_pred ccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 006179 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293 (658)
Q Consensus 214 ~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~ 293 (658)
+.+..-|.+|++|++.++....++...- ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus 93 --------------~elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 93 --------------GDLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0022367888888888888877766554 4689999999998876653333456666655
Q ss_pred hh
Q 006179 294 HS 295 (658)
Q Consensus 294 h~ 295 (658)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=78.34 E-value=12 Score=30.91 Aligned_cols=84 Identities=7% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Q 006179 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 222 (658)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~ 222 (658)
.++.+|+.++.++..+.+.+...+ .++... ..|++-+ ..+..+.+|--++.+.-..
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e~-------~~~~~EL----------~~l~~d~~vy~~iG~vfv~ 60 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINET-------QKALEEL----------SRAADDAEVYKSSGNILIR 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HHSCTTCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HcCCCCchHHHHHhHHHHh
Confidence 467788888888887766653332 222222 1222211 2233445666665543322
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 223 Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
.+...++..|+...+.+...|+.|..++
T Consensus 61 -----~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 61 -----VAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp -----ECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776666666666665554
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.63 E-value=73 Score=37.08 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 006179 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (658)
Q Consensus 58 a~LEQeiE~Lkkkl~~c~ren~nLQeELsE 87 (658)
..||..|+.|+.+|..-..+|..|++++..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp ---------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999998888999999887653
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.83 E-value=56 Score=37.97 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 006179 25 ERDELRKDIEQLCM 38 (658)
Q Consensus 25 ERdEL~KDIEqLCM 38 (658)
|..+|++|++.|-.
T Consensus 961 e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 961 ETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.74 E-value=39 Score=29.74 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 006179 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQ 112 (658)
Q Consensus 60 LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~Ekq 112 (658)
.+.+|+.|++++...+.+|-.|+-|+..+...=..+-.-|..|+.+...+|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47789999999999999999998887665322222212234555555555543
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.50 E-value=16 Score=30.56 Aligned_cols=85 Identities=12% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Q 006179 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 221 (658)
Q Consensus 142 e~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~ 221 (658)
..++.+|+.++.++..+.+.+...+ .++... ..|++-+ ..+..+.+|-.++.+.-.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~-------~~~~e~-------~~~~~eL----------~~l~~d~~vy~~iG~vfv 64 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQ-------LELTEA-------KKALDEI----------ESLPDDAVVYKTVGTLIV 64 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HTSCTTCCEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH----------HcCCCCcHhHHHhhHHHh
Confidence 3566788888888887766664333 222222 1232211 223344566666654322
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 222 ~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
..+...++..|++..+.+...|..|..++
T Consensus 65 -----~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 65 -----KTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp -----EECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466777777777777777777766655
No 19
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.14 E-value=7.9 Score=34.27 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQ 39 (658)
....|..+|..|+.||+.|++.|+.|=|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999988774
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.01 E-value=9.4 Score=40.51 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=19.7
Q ss_pred hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006179 258 GLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 296 (658)
Q Consensus 258 GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~ 296 (658)
.-..+|-...-...||++++++++-|.+.|..|+-.-..
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444444444556666666666555555554443333
No 21
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.42 E-value=16 Score=30.60 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----hhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 006179 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl----~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (658)
..+..+|++|+.+..++..=++.| |.-.-||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665544444 7778888775 4567788899999999999999998887777777
Q ss_pred hHHHHHHHH
Q 006179 81 LQEELSEAY 89 (658)
Q Consensus 81 LQeELsEAY 89 (658)
|+..|-+.+
T Consensus 103 lk~~l~~~~ 111 (117)
T 2zqm_A 103 LTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.26 E-value=29 Score=31.60 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (658)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~ 162 (658)
|+.|.++..-+..-.+++.++.++.++++.+
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333444455555555555554444
No 23
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=65.39 E-value=7.9 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
+=+.|.++|.-.|.| -+-.+|+++|-. +-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL~~------------Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVLRK------------AIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888877764 234456665532 66899999999999998888887654
No 24
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.31 E-value=9.7 Score=32.12 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQs 253 (658)
++=+.|..+|.-.|.+.+-+-..|.++|-. +-.||..|+++...+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~------------A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999988754445566666532 568999999999888877776554
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.22 E-value=54 Score=35.26 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH 278 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~ 278 (658)
.++|-..++..++.|++.++.|-+.-.-..++.++|+......|++.--
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 5788888888889999999988888777777888887777666665433
No 26
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=63.18 E-value=45 Score=29.83 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=50.5
Q ss_pred hhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 125 aERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
-|+-+-+-+++-.|-+=|.|-..|++++...+|..+.+..+|+..+.|+.++..++++..
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444567778888888888889999999999999999999999999999999988754
No 27
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=63.12 E-value=1e+02 Score=33.99 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhh----------hhHHHHhhhchhh
Q 006179 72 AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG----------CMAAAFAERDNSV 131 (658)
Q Consensus 72 ~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs----------~vA~AFaERD~sl 131 (658)
...-|++...+.||.+|- +. -.-++...-|-|+|||| .||.|.|++|+-.
T Consensus 317 ~~Aer~~e~a~ael~~a~-------k~---~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN-------ED---VARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 444555555555665551 11 11223344578899999 9999999999743
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.23 E-value=9.6 Score=31.13 Aligned_cols=53 Identities=11% Similarity=0.268 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQs 253 (658)
++=..|.++|.-.|.|.+. -..|.++|- .+-.||..|++++..|...++.|+.
T Consensus 26 ~in~~f~~Lr~lvP~~~~~-k~sK~~iL~------------~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQGE-KASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHSGGGTTS-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCcCCCCC-CccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688899988877421 234444442 2678999999999999999988864
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.28 E-value=26 Score=28.89 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----hhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 006179 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl----~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~n 80 (658)
..+...+++|+.+..++..=++.| |.-..||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666655433333 8888998875 4577788999999999999999988877666666
Q ss_pred hHHHHH
Q 006179 81 LQEELS 86 (658)
Q Consensus 81 LQeELs 86 (658)
|+..|-
T Consensus 98 lk~~l~ 103 (107)
T 1fxk_A 98 MQVNIQ 103 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 30
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.13 E-value=13 Score=30.39 Aligned_cols=53 Identities=11% Similarity=0.275 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 006179 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (658)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsk 254 (658)
+=+.|.++|.-.|.|.+. -..|.++|- .+-.||..|++++..+...++.|...
T Consensus 17 in~~f~~Lr~lvP~~~~~-k~sK~~iL~------------~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQGE-KASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHTTSGGGTTS-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCC-CCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999988877421 234544442 26689999998888887776666543
No 31
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=60.94 E-value=25 Score=30.56 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHH--------hhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQ--------RTAGLEQEIEILKQKIAACARENSNLQE 83 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~q--------Rta~LEQeiE~Lkkkl~~c~ren~nLQe 83 (658)
+=+...|.+.|++..++|++||++-=-+.-| .++|+-- =...++++|..+.++|...- .
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~reg------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~-------~ 76 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREA------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLK-------L 76 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHH-------H
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHH-------H
Confidence 4457899999999999999999997655444 2333211 12223555555555544332 2
Q ss_pred HHHHHHHHHHHHHHH
Q 006179 84 ELSEAYRIKGQLADL 98 (658)
Q Consensus 84 ELsEAYRiK~qLadL 98 (658)
+.|++..+|+++
T Consensus 77 ---el~K~q~~L~e~ 88 (98)
T 2ke4_A 77 ---EVQKYEAWLAEA 88 (98)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 457777777776
No 32
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.08 E-value=23 Score=31.99 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHhhhhhHHHHhhh--hhHHHHHHHHHHHHHhhhhhcch
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNL 81 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCM--QQaGpgyl~vATrM~~qRta--~LEQeiE~Lkkkl~~c~ren~nL 81 (658)
.+.-+..|..|..|...+++|+|++=| ||+- .| -...++.|++ .+-++++.|+.++....|.|..|
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~-IY---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD-IY---KADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 344566677788888888899998877 6653 23 3456777876 37788999999999888888765
No 33
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=57.98 E-value=1.1e+02 Score=27.87 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
|-.+||++++.|.+ .|++-+++|=.+|=.-...|++.
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777776 56666666666666666666654
No 34
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=55.53 E-value=1.2e+02 Score=27.29 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhH
Q 006179 53 HFQRTAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 115 (658)
Q Consensus 53 ~~qRta~LEQeiE~Lkkkl~~c~re----n~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkF 115 (658)
+-.+.+.|..|++.+|.|+....++ ...||.||....-.+..|..--+-==-+|-.+|.+-|-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445556666666666666666554 33366666665555544442111112346666665554
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.41 E-value=1.5e+02 Score=28.45 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 15 l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
+-.+|.+|+|+|.+|.+.|+.| -.+.+++...++.++..+....++-..+..++.++
T Consensus 16 lD~~i~~l~~~~~~lp~el~~l-----------------e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 16 LDKEIDSLEPLIREKRKDLDKA-----------------LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665555433 23445566666666666666666655666665544
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.87 E-value=40 Score=28.27 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.2
Q ss_pred HHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 006179 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (658)
Q Consensus 37 CMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELs 86 (658)
|-|.-.|.+..-.-.-+-.+...+..+|..|+.++..+.++-..|..++.
T Consensus 53 Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 53 CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433222233445556666677777777766666655555555
No 37
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=54.46 E-value=12 Score=30.92 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=26.4
Q ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 006179 10 NESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (658)
Q Consensus 10 ~~~e~l~~rI~qLe~ERd----EL~KDIEqLCMQQaG 42 (658)
.+.+....++..||.||| .|| |||-+|-+.-|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLR-diE~l~q~~e~ 51 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLR-NIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh
Confidence 356788899999999999 775 89999987544
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.94 E-value=16 Score=40.19 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=50.9
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhH--HHHHHHHH-HHHHhhhhhHHHHHHhhhhcchhhhhhHHH
Q 006179 242 EKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSD--KFISNAIA-ELRLCHSQLRVHVVNSLEEGRSHIKSISDV 318 (658)
Q Consensus 242 e~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~d--k~i~ngi~-~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ 318 (658)
+.||++++.+|.+= -+|+++.+.-...|.+++.... .-..|-++ +|++.|...+..|.+-+ .--.-|.++|..
T Consensus 67 NELKnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQsnLed 142 (562)
T 3ghg_A 67 NKLKNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 55566666664433 3677777666777766664322 22456666 88899999999888888 444555666666
Q ss_pred HHhhh-cc
Q 006179 319 IEEKT-QH 325 (658)
Q Consensus 319 ieekl-~~ 325 (658)
+--+| ++
T Consensus 143 q~~kIQRL 150 (562)
T 3ghg_A 143 QLVDMKRL 150 (562)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555 44
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.66 E-value=40 Score=34.01 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhhh------hHHHHHHHH
Q 006179 382 ASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVT------TEKVKALME 441 (658)
Q Consensus 382 ~s~aLAqAL~EKveALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QVt------~EKVkaLmE 441 (658)
+.+..+..+++++.++|==...+...- |+++.||+++.++|+|+.|+. |--|-+||+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEAR---NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhh---hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.56 E-value=17 Score=27.83 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR 256 (658)
...||..|+++++.|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999998763
No 41
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.53 E-value=48 Score=36.13 Aligned_cols=45 Identities=11% Similarity=0.339 Sum_probs=27.6
Q ss_pred hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHH
Q 006179 258 GLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302 (658)
Q Consensus 258 GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im 302 (658)
.-..+|-...-...||+++++++.-|-+.|.-|+-.-.-.|+...
T Consensus 102 ~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 102 AQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555688888888877777777666554444444333
No 42
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.01 E-value=22 Score=29.55 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 188 kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
++=+.|+.+|...|.+.+.+-..|.++|- ..-.||..|+++...+...++.|+...
T Consensus 15 ~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~------------kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 15 HLRLSLEKLKGLVPLGPDSSRHTTLSLLT------------KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCCTTHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468999999888663332222333321 144899999999888877776665543
No 43
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.90 E-value=82 Score=27.22 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHhhhchhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006179 121 AAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (658)
Q Consensus 121 A~AFaERD~slmEaEkaKE~Ee----~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~ 185 (658)
|-+|++-|-++.|+--|-+.|- .++.++..+..-.--.+|.+.+-+..|..|++++..++++++-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766655543 2333344343333445566666667788889999988888873
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.36 E-value=46 Score=27.88 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQskl 255 (658)
..|+..+.++..+++.+..|...+
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i 87 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665553
No 45
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.25 E-value=51 Score=27.78 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhh
Q 006179 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127 (658)
Q Consensus 63 eiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaER 127 (658)
||+.|+.|+...+.+|..|.-|+-.+.-.=..+-.-|..|+.+...+|.++.=+..-|=.|+--|
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.69 E-value=6.4e+02 Score=33.27 Aligned_cols=100 Identities=8% Similarity=0.158 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccc
Q 006179 137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL 216 (658)
Q Consensus 137 aKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL 216 (658)
++++=.+.-+++++++.++.+|+....+..+-..+|+.+.+.-+...+...+.|...=.=+.|=.+. --++...-..|.
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhcc
Confidence 3333344556677777777777777777666777777777777777777777776543322222211 011223334444
Q ss_pred ccc---ccccccCCcchHHHHHHH
Q 006179 217 LDS---AEMWSFNDTSTSKYISAL 237 (658)
Q Consensus 217 ~ds---~~~Wsfn~tstskyi~aL 237 (658)
.|. +--=+|.|+-|..|=..|
T Consensus 2105 GD~LLaaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2105 GDVVLASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 443 223467777777775554
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.56 E-value=2.1e+02 Score=27.63 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLR 256 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR 256 (658)
+-|+.|+.|+..|+.....|+..||
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888776666555444
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.75 E-value=1.2e+02 Score=24.77 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006179 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (658)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~ 185 (658)
.|++.|.++-+..-+++.+.+.|....+..+...++-+..|+.|+...++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888889999999999999999988888888899999888887763
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.99 E-value=55 Score=27.96 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006179 412 NVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (658)
Q Consensus 412 ~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (658)
+.....+..|.+|++.|..++.||.++..|+..|..+...++.
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667789999999999999999999999999999888774
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.23 E-value=84 Score=28.56 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 006179 57 TAGLEQEIEILKQKIAACARENSNLQEELS 86 (658)
Q Consensus 57 ta~LEQeiE~Lkkkl~~c~ren~nLQeELs 86 (658)
...+.++++.|++++..+.+++..|+-+|-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666665554
No 51
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=41.78 E-value=80 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006179 408 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (658)
Q Consensus 408 llE~~~n~~Lq------~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (658)
.+|+|..+|.. ..+++|+......+.+.-..-.++..|+.+...|+.
T Consensus 5 r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 5 FLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788777754 238888888888888888888899999999888873
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.32 E-value=76 Score=25.09 Aligned_cols=47 Identities=28% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHhhhHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006179 408 LLERNVNSALQ------KKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE 454 (658)
Q Consensus 408 llE~~~n~~Lq------~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e 454 (658)
-+|+|..+|-. ..+.+|+....+.+.+.-..-.+++.|++++..|+.
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777753 348899999999999998899999999999998874
No 53
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=39.96 E-value=67 Score=33.84 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 13 EALMARIQQLEHERDELRKDIEQL 36 (658)
Q Consensus 13 e~l~~rI~qLe~ERdEL~KDIEqL 36 (658)
=.+..||++++.|||+|..-+++.
T Consensus 12 l~id~~I~~i~~eRd~La~~lq~~ 35 (355)
T 3etv_A 12 LNINDRIKQVQNERNELASKLQNL 35 (355)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999887664
No 54
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=38.92 E-value=56 Score=26.10 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=34.6
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 006179 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (658)
Q Consensus 268 ~vr~Lekkqi~~dk~i~ngi~~lq~~h~~~R~~Im~lL~ 306 (658)
.+.+|+.+.+.+|..|.--|.+|+..|...|.=|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 456788888999999999999999999999998887765
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=37.28 E-value=81 Score=24.59 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHh
Q 006179 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKK 275 (658)
Q Consensus 236 aLEeEle~lr~~i~~LQsklR~---GLeI-enhLkk~vr~Lekk 275 (658)
.||+-++.|.++++.||.++.= .++- ...||.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999988742 1222 23488888888865
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.84 E-value=3e+02 Score=26.59 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 006179 248 VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 296 (658)
Q Consensus 248 i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~~ 296 (658)
+..||..+-.--.+-..|++++|.||..+--+..=.|+..+.|.-+.+.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~k 138 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHH
Confidence 4444444443345566678888888887765555555555444444333
No 57
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=35.25 E-value=3e+02 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLC 37 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLC 37 (658)
.-+.+.+|.+.+|.+-..|.||+...+
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y~ 60 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNFL 60 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998643
No 58
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.04 E-value=1.3e+02 Score=26.60 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=28.7
Q ss_pred hhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhH
Q 006179 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (658)
Q Consensus 126 ERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl 176 (658)
|||..+=.|=+++.--+..-.++.++..++.+.++.+.+..+.|..||++.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 555544444444432333345666666666666666666666666666654
No 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.83 E-value=91 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006179 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (658)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI 190 (658)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777778888888888877777665554
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=34.52 E-value=1.9e+02 Score=23.65 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
++..+|++|+.+-|...-..+++--+- +-.-+|...+|++|..|++|+..+--+=...++.|..|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l----------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888887777776654321 22235777888989999888766555555555544443
No 61
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.30 E-value=19 Score=26.37 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 006179 234 ISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQskl 255 (658)
|+.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4678999998888888877654
No 62
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=33.66 E-value=1.2e+02 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 006179 381 EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (658)
Q Consensus 381 d~s~aLAqAL~EKveALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QV 431 (658)
+.=..+|+-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 45 ~~L~e~~keLh~~I~~l-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (107)
T 1ytz_T 45 DKLRDKAKELWDWLYQL-----QTEKYDFAEQIKRKK-YEIVTLRNRIDQA 89 (107)
T ss_dssp SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHhhh-hHHHHHHHHHHHh
Confidence 45678899999998775 899999999887763 3477777666553
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.33 E-value=2.3e+02 Score=24.24 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 006179 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEA 88 (658)
-+++..+|+.|..+.|...-..+++.-+- +=.-+|...+|+||..|++|+...-.+=..+++.|.+|
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~----------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999998888888877542 22356777889999999888765544444444444443
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.18 E-value=78 Score=25.19 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHH
Q 006179 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (658)
Q Consensus 154 R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI 190 (658)
+..+++....+.+.-|+.|...+..++.++..+..+|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666555544
No 65
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=32.67 E-value=2.4e+02 Score=25.97 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HhhhHHHHHHhhH
Q 006179 143 LMSQKFNEFQTRLEELSSENIELKKQNAT----------LRFDLEKQEELNE 184 (658)
Q Consensus 143 ~m~qk~~~~~~R~~E~~s~~~~qk~~n~~----------LQ~dl~~~~eq~e 184 (658)
..-+++++.+..+.+|++.+.+++..+.. +|.+|..-++..+
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe 61 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLS 61 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34578899999999999888888776653 6777776666555
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.33 E-value=94 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHH
Q 006179 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (658)
Q Consensus 155 ~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kV 189 (658)
+.+++.........|..|+.++..+.+++..+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555556666777777776666655443
No 67
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.90 E-value=2.5e+02 Score=24.16 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCch-----HhhhhhHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ------------------------------AGPSY-----LAVATRMHFQ 55 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQ------------------------------aGpgy-----l~vATrM~~q 55 (658)
..+.+..++.+|+....++.+=++.|-.=+ -|.|| ++=|...+-.
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ 95 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKS 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHH
Confidence 356788888888888888887777665422 23344 2346677788
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 56 Rta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
|...|+..++++++.+......-..++++|.+.|
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888877777666666777776665
No 68
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.49 E-value=1.7e+02 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=37.3
Q ss_pred hHhhhh--hHHHHhhhchhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 114 KFFQGC--MAAAFAERDNSVMEAEKAKEKEEL----MSQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 114 kFfQs~--vA~AFaERD~slmEaEkaKE~Ee~----m~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
.|+++. ++.+|---|.+|.+.||+.+.|.+ +-++-..++++.++++..|+.|++
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 567888889999988877665543 555566666676777776766654
No 69
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.24 E-value=99 Score=27.42 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHhhchHHHHHHHHHhhhHHHHHHHHHHHHhhhhh
Q 006179 382 ASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQV 431 (658)
Q Consensus 382 ~s~aLAqAL~EKveALlLlSQqeER~llE~~~n~~Lq~~ieeLqrnl~QV 431 (658)
.=..+|+-||+++..| ++|||=||..+..-- ..|.+|...+.++
T Consensus 46 ~L~e~~keLh~~I~~L-----EeEKYDlE~kv~kq~-yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNL-----EAEKFDLQEKFKQQK-YEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH-----HHhhhhHHHHHHhhh-HHHHHHHHHHHHh
Confidence 3456677777776654 677777777776652 2466666665554
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.08 E-value=1.4e+02 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 006179 441 ELAQLKQDYQLLQEK 455 (658)
Q Consensus 441 ELAqLkq~y~lL~e~ 455 (658)
|.+||++++...+++
T Consensus 56 en~qLk~E~~~wq~R 70 (81)
T 2jee_A 56 ENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 71
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.63 E-value=1.5e+02 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 006179 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (658)
Q Consensus 152 ~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KF 193 (658)
+.|+.+++.++...-..|.+|-.-|..-..+...+...|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888888888888888764
No 72
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.36 E-value=2e+02 Score=24.88 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH--------HHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 006179 144 MSQKFNEFQTRLEELSSENIELKKQNA--------TLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~--------~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~ 200 (658)
+.+.+++|++|+..|.+.+++.++.=. ..|.=...+..+.+.|.-+..+...|-.+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V 74 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENV 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999888887665421 234445677888888888888888876544
No 73
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.34 E-value=2.9e+02 Score=24.24 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 145 SQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 145 ~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
..++.++++|+++.+..+.+.-.-...|+.+...++.+.+
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666666654
No 74
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.33 E-value=2.1e+02 Score=25.69 Aligned_cols=87 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHH
Q 006179 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (658)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~ 143 (658)
|+.|+..+...--+..++ ..||-|+=.+|-.- ..+||-++-+...+ ++.++.|++..+..-+.
T Consensus 17 Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~-------i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 17 IERLYREISGLKAQLENM---KTESQRVVLQLKGH-------VSELEADLAEQQHL-------RQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHH
Q 006179 144 M----------SQKFNEFQTRLEELSSENIELKK 167 (658)
Q Consensus 144 m----------~qk~~~~~~R~~E~~s~~~~qk~ 167 (658)
. .+++.+++.|..-.+-...+.|.
T Consensus 80 l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 80 LRRQREDTEKAQRSLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp HHTTCC----------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 75
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.87 E-value=2.6e+02 Score=23.75 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhh
Q 006179 147 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQ 199 (658)
Q Consensus 147 k~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~ 199 (658)
.=.+++.|++.++..+.+-+.--..++.++..+.++.+ .=|...-++|+.
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld---~KI~eL~elRqg 70 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD---VSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 34556777777777777777667777888888877777 556666677763
No 76
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=28.66 E-value=25 Score=31.09 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhhhhhcc-cccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHH-hH
Q 006179 189 VINKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENH-LK 266 (658)
Q Consensus 189 VI~KFyeiR~~~~e~~~~-s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsklR~GLeIenh-Lk 266 (658)
+=++|.++|.-.|.|.+. .--+|.++|- .+-.||..|++++..+......+ + -|+-.|. |+
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~------------~aieYIk~Lq~~~~~l~~~~~~~----~-~l~~~n~~L~ 104 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILK------------ASVDYIRKLQREQQRAKDLENRQ----K-KLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHH
Confidence 335799999988888432 1234555542 26789999999998886532221 1 1333343 67
Q ss_pred HhHHHHHH
Q 006179 267 KSVRELEK 274 (658)
Q Consensus 267 k~vr~Lek 274 (658)
.++.+||.
T Consensus 105 ~riqeLE~ 112 (118)
T 4ati_A 105 LRVQELEM 112 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77777775
No 77
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.31 E-value=1.6e+02 Score=29.68 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 284 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ 284 (658)
..+|++.|+++++.+.+++++++.++.-.-.- .=.+++.+.++++...+++-|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999887321000 0124455556555555544433
No 78
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.65 E-value=2.9e+02 Score=23.35 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHh
Q 006179 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (658)
Q Consensus 132 mEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~ 185 (658)
+|++.|.++-+..-+++...+.|.......+...++-+..|+.++....++...
T Consensus 16 ~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 16 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555557777777777777777777766667777777766666553
No 79
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=26.36 E-value=4.8e+02 Score=25.73 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.3
Q ss_pred hcCCchHhhhh--hHHHHhhhhhHHHHHHHHH
Q 006179 40 QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQ 69 (658)
Q Consensus 40 QaGpgyl~vAT--rM~~qRta~LEQeiE~Lkk 69 (658)
-+|-||-.||. |-++.||..-=++|..+=.
T Consensus 178 E~GrGFAVVAdEVRkLAe~t~~at~~I~~~i~ 209 (341)
T 3zx6_A 178 EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 209 (341)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789988885 7789998888888876644
No 80
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=25.78 E-value=6.1e+02 Score=26.73 Aligned_cols=239 Identities=11% Similarity=0.062 Sum_probs=127.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYR 90 (658)
..++.++.|.++..--+|+++ +|+...-|+.-.+| .-+.++=..||.+|+.+..++..+...- +-+. .+..
T Consensus 3 ~~~~~~r~v~dl~~Wl~E~~~---~L~S~d~GkDL~sV--e~LLqKH~~lE~eI~a~~~~v~~l~~~a-~~~~---~~~~ 73 (450)
T 3r6n_A 3 WDEFTKHVTSECLGWMRQQRA---EMDMVAWGVDLASV--EQHINSHRGIHNSIGDYRWQLDKIKADL-REKS---AIYQ 73 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH---HTTSCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH---HHHH
T ss_pred cchhhhccHHHHHHHHHHHHH---hcCccccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcH---HHHH
Confidence 356778888888887777764 66677778888555 4567777889999999998887765431 1011 2233
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhHhHhhhhhHHHHhhhchhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006179 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA 170 (658)
Q Consensus 91 iK~qLadLh~ae~~Kn~e~EkqvkFfQs~vA~AFaERD~slmEaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~ 170 (658)
+..+..+|.......-..|+.--+||+.|-.... | ..|++...... .+-.++. ++....+-..
T Consensus 74 L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~-------W----i~EKe~~~~s~--d~gd~l~----dv~~l~~khq 136 (450)
T 3r6n_A 74 LEEEYENLLKASFERMDHLRQLQNIIQATSREIM-------W----INDCEEEELLY--DWSDKNT----NIAQKQEAFS 136 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHSC--CCSTTCC----CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHhcc--ccCcChh----hHHHHHHHHH
Confidence 4444444444334444445555556655321100 0 01111110000 0000000 0111112233
Q ss_pred HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHH
Q 006179 171 TLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVEN 250 (658)
Q Consensus 171 ~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~ 250 (658)
+|+.++..++.... .|.. .+.-|+. .-.|.-..+..++.+|...-+.|++-..+
T Consensus 137 ~l~~EL~~~e~~i~---~v~~-------------------~G~~Li~----~~Hpas~~I~~r~~~L~~~W~~L~~l~~~ 190 (450)
T 3r6n_A 137 IRMSQLEVKEKELN---KLKQ-------------------ESDQLVL----NQHPASDKIEAYMDTLQTQWSWILQITKC 190 (450)
T ss_dssp HHHHHHHHHHHHHH---HHHH-------------------HHHHHHH----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchHHHH---HHHH-------------------HHHHHHH----cCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544443333 2222 1222221 11233334889999999999999999999
Q ss_pred HHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHH-----------HHHHHHhhhhhHHHHH
Q 006179 251 LQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNA-----------IAELRLCHSQLRVHVV 302 (658)
Q Consensus 251 LQsklR~GLeIenhLkk~vr~Lekkqi~~dk~i~ng-----------i~~lq~~h~~~R~~Im 302 (658)
-+..|.-.+...+. ..+++..|.-..-...++.+. ..+|.+.|......|.
T Consensus 191 R~~~L~~a~~~~QF-~~Da~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~~l~ 252 (450)
T 3r6n_A 191 IDVHLKENAAYFQF-FEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKIL 252 (450)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999888777654 456666665544444444443 3456666665544443
No 81
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=25.59 E-value=3.9e+02 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQ 39 (658)
.+..+..+|.+.+.+-|.|..+|+..|+.
T Consensus 37 ~d~~~a~~V~~~d~~iD~l~~~I~~~~~~ 65 (235)
T 1sum_B 37 RNESLAREVIADEEVVDQMEVEIQEKAME 65 (235)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999999974
No 82
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.16 E-value=6.4e+02 Score=26.86 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=55.6
Q ss_pred cccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHh-------------------HHhHHHHHHh
Q 006179 221 EMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHL-------------------KKSVRELEKK 275 (658)
Q Consensus 221 ~~Wsfn~t------stskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhL-------------------kk~vr~Lekk 275 (658)
+.-+|+-| -.+||-......|..|+..|+.+-|.=.-..+.-++| ++.-..||++
T Consensus 14 ~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~ 93 (411)
T 3ghg_C 14 RFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEI 93 (411)
T ss_dssp CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHH
Confidence 45666632 3677777666666777666666655544444444444 2223345555
Q ss_pred hhhhHHHH---HHHHHHHHHhhhhhHHHHHHhhhhcchhhhhhHHHHHhhh-cccccc
Q 006179 276 IIHSDKFI---SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDDV 329 (658)
Q Consensus 276 qi~~dk~i---~ngi~~lq~~h~~~R~~Im~lL~ee~s~i~s~v~~ieekl-~~~~n~ 329 (658)
..+ +..| .+-|..|+.-....+..| ..|+..|..++.+. +-|.++
T Consensus 94 ~~~-~~~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~~~~~~~ 142 (411)
T 3ghg_C 94 MKY-EASILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQEPCKDT 142 (411)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCSCCEES
T ss_pred HHH-HHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccCCcc
Confidence 443 4444 456666666555555444 45566666666666 444433
No 83
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.10 E-value=78 Score=25.12 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQL 36 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqL 36 (658)
-+..|..||++|++-++++...||.|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 46778889999988887766666554
No 84
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.86 E-value=1.4e+02 Score=25.42 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhHHHHHhhhhh---hHHH-HHHhHHhHHHHHHhhh
Q 006179 236 ALEDELEKTRSSVENLQSKLRM---GLEI-ENHLKKSVRELEKKII 277 (658)
Q Consensus 236 aLEeEle~lr~~i~~LQsklR~---GLeI-enhLkk~vr~Lekkqi 277 (658)
.||+-++.|.++++.||.++.= .++- .+.||.|+-.||++-.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999987642 1222 2337888888887654
No 85
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.82 E-value=7.1e+02 Score=27.17 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (658)
Q Consensus 134 aEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk 166 (658)
.|+.++.+..|-++=..|++++.-++..|++..
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~ 539 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 539 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888776644
No 86
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.51 E-value=75 Score=31.91 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=4.6
Q ss_pred cccccccccccccc-ccccccCC
Q 006179 206 TSWEDKCACLLLDS-AEMWSFND 227 (658)
Q Consensus 206 ~s~~~Kc~~LL~ds-~~~Wsfn~ 227 (658)
-.|+..|++.|+=+ ...|..-+
T Consensus 255 ~d~~re~~f~l~~~~~~~Y~v~~ 277 (315)
T 2ve7_A 255 KNPESPFMFSLHLNEARDYEVSD 277 (315)
T ss_dssp -CCCCCC----------------
T ss_pred CCCCceEEEEEEecCCCceEEEe
Confidence 45778888888776 45555553
No 87
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.32 E-value=2.1e+02 Score=31.05 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=45.7
Q ss_pred ccccccccccccccCCc------chHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhh
Q 006179 212 CACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276 (658)
Q Consensus 212 c~~LL~ds~~~Wsfn~t------stskyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLkk~vr~Lekkq 276 (658)
..|+..| .+.-+|+-| -.+||-......|..|+..|+.+-|.=.-..++-++|+-..+.-||..
T Consensus 63 g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~ 132 (461)
T 3ghg_B 63 GGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV 132 (461)
T ss_dssp CCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence 4444444 356788833 478888888888888888888888877777888888876666555443
No 88
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.87 E-value=72 Score=24.89 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRM 257 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~ 257 (658)
.-++|||-|+..|..+++-|.++|..
T Consensus 20 eelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999888864
No 89
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=23.85 E-value=5e+02 Score=25.75 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=43.6
Q ss_pred HHHHHHHHH----HHHH-------HHhHHHHHhhhhh----h-HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 006179 232 KYISALEDE----LEKT-------RSSVENLQSKLRM----G-LEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHS 295 (658)
Q Consensus 232 kyi~aLEeE----le~l-------r~~i~~LQsklR~----G-LeIenhLkk~vr~Lekkqi~~dk~i~ngi~~lq~~h~ 295 (658)
+||..++.. .... .....++|.|+|- | =.+--.|.+.+..+..++..++.|+.+|+.+. ..
T Consensus 120 k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A---L~ 196 (253)
T 2d1l_A 120 KVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA---LI 196 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 777766542 2333 3445788888887 2 34555577777788888899999999887643 34
Q ss_pred hhHHH
Q 006179 296 QLRVH 300 (658)
Q Consensus 296 ~~R~~ 300 (658)
..|.+
T Consensus 197 EERrR 201 (253)
T 2d1l_A 197 EERGR 201 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 90
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.51 E-value=1.7e+02 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhH
Q 006179 232 KYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (658)
Q Consensus 232 kyi~aLEeEle~lr~~i~~LQsklR~GLeIenhLk 266 (658)
.|++.||.....+....+.|.+++.- |.=||...
T Consensus 3 aYl~eLE~r~k~le~~naeLEervst-Lq~EN~mL 36 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLST-LQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH
Confidence 69999999988888888777766542 33344433
No 91
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=23.21 E-value=1.4e+02 Score=31.28 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccccccccccccccccc
Q 006179 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (658)
Q Consensus 144 m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~W 223 (658)
|..++..+..|..+++..+.+-.=.+| +.....+....-.+..+++.|-+++...-+..++. -|+.|+
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d--~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~------el~~D~---- 68 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKD--KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAE------SLLDDP---- 68 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSTTCH----
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcCH----
Confidence 346777788888888776643221111 11112222222224466677766665443331110 011122
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q 006179 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (658)
Q Consensus 224 sfn~tstskyi~aLEeEle~lr~~i~~LQsklR~G 258 (658)
...+-.++|+..+...++.|..+|+.-
T Consensus 69 --------e~~~~a~~e~~~l~~~~~~le~~l~~l 95 (354)
T 3d5a_X 69 --------ELKEMAKAEREALLARKEALEKELERH 95 (354)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888999999999988877753
No 92
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=23.18 E-value=22 Score=27.17 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.9
Q ss_pred cccccccceeeccCC
Q 006179 344 LDEFECRDVHINNDA 358 (658)
Q Consensus 344 ~~e~ec~dVhv~~d~ 358 (658)
-|+++|+|+|+-+..
T Consensus 20 ac~n~c~~~~~qn~t 34 (40)
T 3ssb_C 20 ACDNVCADLHIQNKT 34 (40)
T ss_dssp SCCCBGGGTTTCCSS
T ss_pred hHhhhhhhhhccccc
Confidence 589999999998764
No 93
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=23.13 E-value=2e+02 Score=28.10 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--chHhh----------------hhhHHHHhhhhhHHHHHHHHHHH
Q 006179 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-P--SYLAV----------------ATRMHFQRTAGLEQEIEILKQKI 71 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdEL~KDIEqLCMQQaG-p--gyl~v----------------ATrM~~qRta~LEQeiE~Lkkkl 71 (658)
..+.|..++...-..-....+.|-+||..++| | -|+.. ..++|+.....+..+|..++.+|
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl 235 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 35667777777777788888999999998888 2 33332 34578888888888888888887
Q ss_pred HHhhhh
Q 006179 72 AACARE 77 (658)
Q Consensus 72 ~~c~re 77 (658)
...-.+
T Consensus 236 ~~ie~~ 241 (339)
T 1sig_A 236 QQIEEE 241 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 94
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.01 E-value=78 Score=24.81 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006179 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (658)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~k 188 (658)
.++.+++.........|..|..++..+.+++..+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566677777777777776664433
No 95
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.95 E-value=1e+02 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 230 TSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 230 tskyi~aLEeEle~lr~~i~~LQskl 255 (658)
....+++||-|...|+++++.|-.|+
T Consensus 4 lnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999886553
No 96
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.24 E-value=2e+02 Score=24.64 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHH
Q 006179 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (658)
Q Consensus 148 ~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~k 188 (658)
-.+++.|+.+|+.. |..|+..+..++.++..+..
T Consensus 38 ~~e~~~r~~~Le~E-------N~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 38 NLETQHKVLELTAE-------NERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666554 45555555555555554433
No 97
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.15 E-value=3.7e+02 Score=22.94 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=32.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhH
Q 006179 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (658)
Q Consensus 133 EaEkaKE~Ee~m~qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e 184 (658)
|++.|.++-+..-+++...+.|....+..+....+-+..|..|+....++..
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555677777777776666666655555566666666655555
No 98
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.67 E-value=45 Score=23.70 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhh
Q 006179 234 ISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 234 i~aLEeEle~lr~~i~~LQskl 255 (658)
|.|||=|.|.|..+|+-|.+|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 4577778888877777777664
No 99
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.50 E-value=88 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhHHHhhhH
Q 006179 155 LEELSSENIELKKQNATLRFDL 176 (658)
Q Consensus 155 ~~E~~s~~~~qk~~n~~LQ~dl 176 (658)
....+.+++++|++|..|....
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHH
Confidence 3456778888888888876654
No 100
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.46 E-value=1.2e+02 Score=25.89 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-------------hHHHHHHh
Q 006179 231 SKYISALEDELEKTRSSVENLQSKLRM-------------GLEIENHL 265 (658)
Q Consensus 231 skyi~aLEeEle~lr~~i~~LQsklR~-------------GLeIenhL 265 (658)
-+.|++|.++|..-...|..|+.-+.+ ++-|||.|
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNl 64 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNV 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHH
Confidence 357899999998888889988887776 57788764
No 101
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.21 E-value=1.9e+02 Score=24.26 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHH
Q 006179 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (658)
Q Consensus 146 qk~~~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~ 179 (658)
++..+++.|+.+|+..+..++..-..|+.++..+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777665555444444444444443
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.80 E-value=2.4e+02 Score=25.93 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=34.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006179 408 LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKI 456 (658)
Q Consensus 408 llE~~~n~~Lq~~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~e~~ 456 (658)
-|++.+-++ |++++||+-.|-..+-.=-++.+|+-+|+-+.+-|.-++
T Consensus 61 SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 61 SLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 355555555 566788887777754444568999999999998877554
No 103
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.58 E-value=2.8e+02 Score=24.32 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=23.9
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 006179 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (658)
Q Consensus 51 rM~~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAY 89 (658)
|.+.+|.-+.|+|++.|+.++ ..|+..|..++
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~-------~el~~~l~~~~ 38 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKV-------LELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHH
Confidence 678899999999999999965 34555554443
No 104
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.54 E-value=3.3e+02 Score=22.46 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHhhhhhHHHHhhhhhHHHHHHHHHHHHHh
Q 006179 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74 (658)
Q Consensus 16 ~~rI~qLe~ERdEL~KDIEqLCMQQaGpgyl~vATrM~~qRta~LEQeiE~Lkkkl~~c 74 (658)
.+.+.+|+.+-..|...|..|=-|=|-|+|.+- -+.+++.|-++++.++..|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~----d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ----PHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666678886321 1234444555555555444433
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.54 E-value=1.3e+02 Score=23.52 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006179 420 KIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQ 453 (658)
Q Consensus 420 ~ieeLqrnl~QVt~EKVkaLmELAqLkq~y~lL~ 453 (658)
.|.+|+....+.+.+.-..-.++.+|+++...|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999989999889999999999888776
No 106
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.53 E-value=9.2e+02 Score=26.92 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhhHhHHHHHH
Q 006179 150 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (658)
Q Consensus 150 ~~~~R~~E~~s~~~~qk~~n~~LQ~dl~~~~eq~e~~~kVI~ 191 (658)
+++.|+..++..+..|...-.+||.-|+.+-.....+-.-|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887778888888877766666556665
No 107
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.46 E-value=2.6e+02 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006179 14 ALMARIQQLEHERDELRKDIEQL 36 (658)
Q Consensus 14 ~l~~rI~qLe~ERdEL~KDIEqL 36 (658)
.+..++.+|+++|+++.|.|-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777888888877764
No 108
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=20.37 E-value=48 Score=25.50 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 229 STSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 229 stskyi~aLEeEle~lr~~i~~LQs 253 (658)
....||+.||++++.|...|..|++
T Consensus 46 ~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 46 YKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998887654
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.19 E-value=2.7e+02 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHh
Q 006179 149 NEFQTRLEELSSENIELKKQNATLR 173 (658)
Q Consensus 149 ~~~~~R~~E~~s~~~~qk~~n~~LQ 173 (658)
..-+.|++++++.+.+.......||
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555544444444433333
Done!