Query 006179
Match_columns 658
No_of_seqs 18 out of 20
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 18:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 60.8 6.3 0.00046 30.5 5.3 55 189-255 21-75 (88)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 57.2 7.6 0.00055 28.7 4.9 51 191-255 6-56 (61)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 53.5 7.9 0.00058 29.7 4.7 51 191-255 23-73 (80)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 51.3 11 0.00083 30.0 5.5 77 12-88 17-105 (107)
5 d1nlwa_ a.38.1.1 (A:) Mad prot 49.9 9.7 0.00071 28.9 4.6 52 191-254 18-69 (79)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 36.5 37 0.0027 26.8 6.4 34 64-97 10-43 (107)
7 d1nkpb_ a.38.1.1 (B:) Max prot 34.9 30 0.0022 26.2 5.3 52 189-253 17-68 (83)
8 d1vcsa1 a.47.2.1 (A:8-96) Vesi 28.5 1.2E+02 0.0085 23.7 8.1 43 125-167 27-81 (89)
9 d1qvra2 c.37.1.20 (A:149-535) 25.7 1.6E+02 0.012 27.7 10.1 45 54-98 281-325 (387)
10 d1wu9a1 a.245.1.1 (A:191-249) 21.5 85 0.0062 23.6 5.6 31 11-41 9-42 (59)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.82 E-value=6.3 Score=30.54 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
+=+.|.++|.-.|.+.+-.--.|.++|-. +.+||..|++++..+...++.|+...
T Consensus 21 in~~f~~Lr~llP~~~~~~k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~l~~~~ 75 (88)
T d1nkpa_ 21 LKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRKRR 75 (88)
T ss_dssp HHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCccCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568889888776643333346666532 67999999999998888777776544
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.23 E-value=7.6 Score=28.67 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
++|-.+|.-.|-|. +-.+|+++|-. +-.||..|+.+...|......|+...
T Consensus 6 ~~f~~L~~lvP~~~--~K~~Ka~iL~~------------Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 6 DKIIELKDLVMGTD--AKMHKSGVLRK------------AIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHSCSS--CCCCTTTHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC--CcccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888777551 22356666532 56899999999999998888877643
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.52 E-value=7.9 Score=29.69 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=35.3
Q ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 006179 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (658)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQskl 255 (658)
+.|.++|.-.|.| ..-.+|+++|-. +-.||..|+++++.|......|+..+
T Consensus 23 ~~~~~L~~llP~~--~~k~~K~~iL~~------------a~~yI~~L~~~~~~L~~e~~~lk~~~ 73 (80)
T d1am9a_ 23 DKIIELKDLVVGT--EAKLNKSAVLRK------------AIDYIRFLQHSNQKLKQENLSLRTAV 73 (80)
T ss_dssp HHHHHHHHHHTCS--SCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC--CCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677787765544 122356665532 66899999999999988888776544
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=51.30 E-value=11 Score=29.98 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHh----hhhhHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 006179 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (658)
Q Consensus 12 ~e~l~~rI~qLe~ERdEL~KDIEqL--------CMQQaGpgyl~----vATrM~~qRta~LEQeiE~Lkkkl~~c~ren~ 79 (658)
...+..++++|+.+..|...=++.| |.-..||-+|. -+--.+..|...|+.+|++|.+++..+-.+=.
T Consensus 17 l~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 17 AQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888777766544443 66777877653 34456778889999999999998888777766
Q ss_pred chHHHHHHH
Q 006179 80 NLQEELSEA 88 (658)
Q Consensus 80 nLQeELsEA 88 (658)
.++..+.++
T Consensus 97 ~~~~~l~~~ 105 (107)
T d1fxka_ 97 EMQVNIQEA 105 (107)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 677666554
No 5
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.91 E-value=9.7 Score=28.87 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=36.4
Q ss_pred HHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhh
Q 006179 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (658)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQsk 254 (658)
..|.++|.-.|.+.+..-..|.++|-. +-.||..|++++..+...++.|+.+
T Consensus 18 ~~f~~L~~llP~~~~~~k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 18 LSLEKLKGLVPLGPDSSRHTTLSLLTK------------AKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHSSCCCSSSCCCTTHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887776644433456665532 5689999999998888777777654
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.46 E-value=37 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 006179 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (658)
Q Consensus 64 iE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLad 97 (658)
+..|+.++..+...-..|.-++.|+.++..-|..
T Consensus 10 ~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444455555555555555556665555544443
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.86 E-value=30 Score=26.23 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHh
Q 006179 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (658)
Q Consensus 189 VI~KFyeiR~~~~e~~~~s~~~Kc~~LL~ds~~~Wsfn~tstskyi~aLEeEle~lr~~i~~LQs 253 (658)
+=+.|.++|.--|.|.+. --.|.+||-. +..||..|++++..+...+..|+.
T Consensus 17 in~~f~~L~~llP~~~~~-k~sK~~iL~~------------A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 17 IKDSFHSLRDSVPSLQGE-KASRAQILDK------------ATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHTTSGGGTTS-CCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC-CCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678888877765332 2245555532 678999998888777766665544
No 8
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.46 E-value=1.2e+02 Score=23.71 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred hhhchhhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 006179 125 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELKK 167 (658)
Q Consensus 125 aERD~slmEaEkaKE~Ee~m~qk~------------~~~~~R~~E~~s~~~~qk~ 167 (658)
.+|...|-++|+.-+..+.++.+. ..+..|++.|.+++...|+
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~ 81 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 81 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999888888887776 4688899999888866553
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=25.66 E-value=1.6e+02 Score=27.75 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 006179 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (658)
Q Consensus 54 ~qRta~LEQeiE~Lkkkl~~c~ren~nLQeELsEAYRiK~qLadL 98 (658)
..|-..+++++..+++++......-.....-+.+...+|.+|.++
T Consensus 281 ~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~l 325 (387)
T d1qvra2 281 QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEV 325 (387)
T ss_dssp HSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999998888777777777777788888888766
No 10
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.53 E-value=85 Score=23.62 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHHHhhc
Q 006179 11 ESEALMARIQQLEHERDE---LRKDIEQLCMQQA 41 (658)
Q Consensus 11 ~~e~l~~rI~qLe~ERdE---L~KDIEqLCMQQa 41 (658)
....|..-++.||+|||= ==.|||-||-..-
T Consensus 9 ei~elk~~v~~lEkERdFYF~KLRdIEilcQ~~e 42 (59)
T d1wu9a1 9 QVNVLKLTVEDLEKERDFYFGKLRNIELICQENE 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 345677778889999983 2249999997543
Done!