BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006180
         (658 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
           Terminal Domain
 pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
           Terminal Domain
 pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
           Terminal Domain
 pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
           Terminal Domain
          Length = 384

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 126 PEIQESLRSKGISYKFKSFSYLYNEEQFIASLAR 159
           PE+QE+L S    YK+++F Y+Y+ ++ ++ L R
Sbjct: 113 PELQEALISIIDHYKWQTFVYIYDADRGLSVLQR 146


>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
          Length = 304

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 11/64 (17%)

Query: 38  QYSPLAALRQDFGSLIG--TQGSRSKKLWGNVKAFESLQPYANPRTNYPAPNEENNGFIY 95
           +Y P +A      +LIG   +GS  + L G         PYA P  N P PN + NG IY
Sbjct: 189 KYRPASA---SVSALIGGNQEGSHPQPLGGPEPG-----PYAQPSVNTPLPNLQ-NGPIY 239

Query: 96  AKVF 99
           A+V 
Sbjct: 240 ARVI 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,950,363
Number of Sequences: 62578
Number of extensions: 830968
Number of successful extensions: 1558
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1556
Number of HSP's gapped (non-prelim): 3
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)