BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006180
(658 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 176 bits (446), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 182/349 (52%), Gaps = 26/349 (7%)
Query: 61 KKLWGNVKAFESLQPYANPRTNYPAPNEENNGFIYAKVFGGFEKIRSSICDLVTISRLLN 120
++LW + K+ +P + PR+++P P +E NG++ + GG + RS+IC+ V +R++N
Sbjct: 60 EELWESAKS-GGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMN 118
Query: 121 ATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAAR-KRNE 179
ATLV+PE L + + F +Y+ E FI +L DV IV +P+ K + K+ +
Sbjct: 119 ATLVLPE----LDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIK 174
Query: 180 FPTFKPKVSTSPNYYIQEVLPKLKRTQVIGLILTDGGCLQSILPPSMSELQRLRCRVAFH 239
+P +Y+ L ++ I L + I P E QRLRCRV +H
Sbjct: 175 AFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNP---EYQRLRCRVNYH 231
Query: 240 ALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELI-QYRR 298
AL+F+P I L +V++LR+ G F++ H + LA+ GC ++F +++ +YR+
Sbjct: 232 ALRFKPHIMKLSESIVDKLRSQGH-FMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRK 290
Query: 299 AQMIRQGIVNEELSVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHR 358
+ ++ E RR G CPL PEEVG++LRAM + T IYLA E FGG +
Sbjct: 291 ENFADKRLIYNE-------RRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343
Query: 359 VLIPLRAMFSNLVDRTSLCSQKEFS----DLIGPE----TSLPQDLFQP 399
+ P R +F L + +S+ +E S LIG L D+F P
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMP 392
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 15/136 (11%)
Query: 443 TESDTEPSPSAMDLRNQAHRLLWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRL 502
S +PS +L + L+ A+DY+V + +D F P + DG +FA+ ++G RL
Sbjct: 357 NHSSVDPSE---ELSATSQGLIGSAVDYMVCLLSDIFMPTY--DGPS--NFANNLLGHRL 409
Query: 503 YESAASRTYRPDRKLLAELFNITRENMYHPKHNWTVSVKEHLNRSLDENGFIRQSLFSKP 562
Y + T RPDRK LA +F I RE +E + R + + F P
Sbjct: 410 YYGFRT-TIRPDRKALAPIF-IAREK------GKRAGFEEAVRRVMLKTNFGGPHKRVSP 461
Query: 563 VSFLSHPLPECSCRTS 578
SF ++ PEC C+ +
Sbjct: 462 ESFYTNSWPECFCQMN 477
>sp|Q1LB18|GLK_RALME Glucokinase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=glk PE=3 SV=1
Length = 336
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 60/154 (38%), Gaps = 21/154 (13%)
Query: 489 KWPDFASLVMGQRLYESAASRTYRPDRKLLAELFNITRENMYHPKHNWTVSVKEHLNRSL 548
K + ASL RLY S RP + +T + + HNW SV E + R+L
Sbjct: 38 KVAEHASLEAAMRLYMLTRSGAARPRHAAIGLANPVTGDQVKLTNHNWAFSV-EAMRRAL 96
Query: 549 DENGFIRQSLFSKPVSFLSHPLPECSC-----RTSSATVPNELKGKDGRFLYGGEDECPK 603
D + + + F+ L + LP+ S T+ AT P L G G P
Sbjct: 97 DLDTLVAINDFTSLALALPY-LPDASLVQVRDGTAVATAPRALIGPGTGLGVSGLIPAP- 154
Query: 604 WIQRGQEAGSLELAGGKTDESESSDYDELPESDD 637
G++ LAG E + +P +DD
Sbjct: 155 -------GGAVALAG------EGGHIEIMPVTDD 175
>sp|Q8NWQ3|DHA1_STAAW Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain MW2)
GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLQDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q6G9C3|DHA1_STAAS Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476)
GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLQDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|P99151|DHA1_STAAN Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain N315)
GN=ald1 PE=1 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|P63478|DHA1_STAAM Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q5HFY4|DHA1_STAAC Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain COL)
GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q2FH00|DHA1_STAA3 Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain USA300)
GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q6GGW9|DHA1_STAAR Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252)
GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q2YY66|DHA1_STAAB Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=ald1 PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E-------FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ P KP P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILIPGAKP-----PKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|Q2FYJ2|DHA1_STAA8 Alanine dehydrogenase 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=ald1 PE=3 SV=1
Length = 372
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 119 LNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAARKRN 178
LNA ++I E+ + + K +Y E +DV +VKS PENL K+
Sbjct: 190 LNAKVIIIELNDD--------RIKYLEDMYAE--------KDVTVVKSTPENLAEQIKKA 233
Query: 179 E--FPTFKPKVSTSPNYYIQEVLPKLKRTQV-IGLILTDGGCLQSILPPSMSE 228
+ T + P +E++ +K+ V I + + GG +++I P ++S+
Sbjct: 234 DVFISTILISGAKPPKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISD 286
>sp|P09176|TOPL_BPT4 DNA topoisomerase large subunit OS=Enterobacteria phage T4 GN=39
PE=1 SV=2
Length = 516
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 113 VTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLPENLK 172
+T+ RL +V P+IQ + K + FK ++ Y+E + I V P+ +
Sbjct: 204 ITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKYARQYDEHAIVQEQENCSIAVGRSPDGFR 263
Query: 173 AARKRNEFPTFKP--KVSTSPNYYIQEVLPKLKR 204
N T + + + ++++P++KR
Sbjct: 264 QLTYVNNIHTKNGGHHIDCAMDDICEDLIPQIKR 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,738,571
Number of Sequences: 539616
Number of extensions: 11795235
Number of successful extensions: 29860
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 29851
Number of HSP's gapped (non-prelim): 24
length of query: 658
length of database: 191,569,459
effective HSP length: 124
effective length of query: 534
effective length of database: 124,657,075
effective search space: 66566878050
effective search space used: 66566878050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)