Query 006180
Match_columns 658
No_of_seqs 194 out of 406
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 19:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 5.9E-52 1.3E-56 424.4 1.3 304 98-507 6-345 (351)
2 PF05830 NodZ: Nodulation prot 85.0 21 0.00045 39.1 13.9 219 91-375 2-242 (321)
3 KOG3849 GDP-fucose protein O-f 79.0 2.4 5.2E-05 45.6 4.3 173 89-284 27-249 (386)
4 KOG3111 D-ribulose-5-phosphate 54.3 35 0.00076 35.5 6.5 110 242-371 42-171 (224)
5 PF00799 Gemini_AL1: Geminivir 31.9 42 0.00091 31.6 2.8 28 323-351 14-41 (114)
6 KOG3849 GDP-fucose protein O-f 28.7 47 0.001 36.2 2.9 33 467-505 336-368 (386)
7 PF14123 DUF4290: Domain of un 25.3 61 0.0013 32.9 2.8 62 361-433 44-107 (176)
8 PF12273 RCR: Chitin synthesis 24.5 44 0.00096 31.3 1.6 20 8-27 1-20 (130)
9 PF14771 DUF4476: Domain of un 23.9 55 0.0012 28.9 2.0 46 325-385 39-84 (95)
10 PF10892 DUF2688: Protein of u 21.4 62 0.0013 27.6 1.7 17 321-338 41-57 (60)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=5.9e-52 Score=424.41 Aligned_cols=304 Identities=29% Similarity=0.454 Sum_probs=202.7
Q ss_pred EcCChhhhHHHHHHHHHHHhhhcceEecccccccccccCCCC--CCCCCccccChHHHHHhccCCeEEeccCchhHHhhc
Q 006180 98 VFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISY--KFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAAR 175 (658)
Q Consensus 98 anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~w~d~s--d~s~F~DIFDvdhFI~sL~~DVrIVk~LP~~l~~~~ 175 (658)
+.||+|+||.++++||++|++||+|||||.+..... |++.+ ..-.|+++||+++|+++++.+|.+++.+|..+....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~-~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~ 84 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYH-WKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVF 84 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESS-SS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCcccccc-ccccccccccChhhhccHHHHHHHhhCceehheeccchhcccc
Confidence 789999999999999999999999999999999864 44432 112399999999999999999999999987776543
Q ss_pred cc---------------------------CCCCccCCCC-CCChhhHHhhhhhhhhcc------ceEEEeecCCCccccC
Q 006180 176 KR---------------------------NEFPTFKPKV-STSPNYYIQEVLPKLKRT------QVIGLILTDGGCLQSI 221 (658)
Q Consensus 176 ~~---------------------------~~~~~~~vp~-~ss~~yY~~~VLP~Lkk~------~VI~l~~~d~rla~~~ 221 (658)
.. .....+.+.. ++.+.+|+++++|++.++ +|+.|..+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 164 (351)
T PF10250_consen 85 RLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNY 164 (351)
T ss_dssp -EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--G
T ss_pred chhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcc
Confidence 21 1112233333 778899999999999987 9999999998887776
Q ss_pred CCCChhHHhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhhhhhhhhccccccchhHHHHHHHHHHHh
Q 006180 222 LPPSMSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELIQYRRAQM 301 (658)
Q Consensus 222 LP~~~~eiQrLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~DMLAfSGC~~~~~~~~~el~~~rr~~~ 301 (658)
+++ ++|| +|+|+++|+++|+++|++|+..+++|||+|||+|+|| +++|.+.. ..++++.-|.+
T Consensus 165 ~~~---~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~- 227 (351)
T PF10250_consen 165 LDR---DLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW- 227 (351)
T ss_dssp GGG---GGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-
T ss_pred cCc---cceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-
Confidence 553 6777 9999999999999999999955679999999999999 99999744 33333322221
Q ss_pred hhccccccccccCchhhcCCCCCCCChHHHHHHHHhcCCCCCceEEEecccccCcccchhhHHHhccCccccccCCChhh
Q 006180 302 IRQGIVNEELSVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKE 381 (658)
Q Consensus 302 ~k~~~~k~~~~i~s~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl~tK~tLat~~E 381 (658)
+++.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|+++||++++|+++.+.+|
T Consensus 228 -------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 300 (351)
T PF10250_consen 228 -------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEE 300 (351)
T ss_dssp --------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--
T ss_pred -------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHH
Confidence 3345677788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCCCCCCCCCcchhHHHHHHHhhcCCCCCCCCCCCCCccccccccccccccccCCCCCCCchhhhhhhhh
Q 006180 382 FSDLIGPETSLPQDLFQPPPAKSEKQLKEEWNKAGPRPRPLSPPPDRPIYLHEKEGWYGWITESDTEPSPSAMDLRNQAH 461 (658)
Q Consensus 382 L~~f~g~~~~~~~~~~~~p~~~~~~~~~~~w~~~~~rp~~~~~p~~rp~y~~~~e~~~g~~~e~~~e~~~s~~~~r~~~h 461 (658)
+++|.+
T Consensus 301 ~~~~~~-------------------------------------------------------------------------- 306 (351)
T PF10250_consen 301 LEPLND-------------------------------------------------------------------------- 306 (351)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred hhhccc--------------------------------------------------------------------------
Confidence 998863
Q ss_pred hhhhhhhheeeeecccccccccCCCCCCccchHHHhhhcccccccC
Q 006180 462 RLLWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYESAA 507 (658)
Q Consensus 462 ~l~~AALDYiV~l~SDvFvpt~~~~G~g~~Nma~~v~GHR~Y~G~~ 507 (658)
.++|+|||+||+.||+||.+. || .|+..|+++|.|.|..
T Consensus 307 -~~~a~vD~~i~~~s~~Figt~---~S---tfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 -DQLAMVDQEICSRSDVFIGTC---GS---TFSSNIARERHYRGKP 345 (351)
T ss_dssp -S--HHHHHHHHHHSSEEEE-T---T----HHHHHHHHHHHHSSSS
T ss_pred -cchhHHHHHHHhcCCEEEecC---cc---hhHHHhhcccCcCCCC
Confidence 235999999999999999865 43 7999999999999974
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=84.97 E-value=21 Score=39.07 Aligned_cols=219 Identities=17% Similarity=0.147 Sum_probs=102.0
Q ss_pred CceEEEEEcCChhhhHHHHHHHHHHHhhhcceEecccccccccccCCCCCCCCCccccChHHHHHhcc--CCeEEeccCc
Q 006180 91 NGFIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLA--RDVIIVKSLP 168 (658)
Q Consensus 91 nGYL~V~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~w~d~sd~s~F~DIFDvdhFI~sL~--~DVrIVk~LP 168 (658)
+.|++.+--+||+.-=-+++-|-.+|+-.|-||||=-=. +- +-++ .|...|++ |-+-.+ .-|+|+-.=+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~-s~-~~~~-----~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRG-SC-YLDQ-----PFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT--T-T-SS-----TTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEEcCC-ce-ecCC-----cccccCCc--ccchhhhhcCceeEecch
Confidence 478999999999999999999999999999999984211 11 2222 25555544 444333 3455552211
Q ss_pred hhHHhhcccCCCCccCCCCCCChhh---------HH---hhhhhhhh------ccceEEEeecCCCccccCCCCChhHHh
Q 006180 169 ENLKAARKRNEFPTFKPKVSTSPNY---------YI---QEVLPKLK------RTQVIGLILTDGGCLQSILPPSMSELQ 230 (658)
Q Consensus 169 ~~l~~~~~~~~~~~~~vp~~ss~~y---------Y~---~~VLP~Lk------k~~VI~l~~~d~rla~~~LP~~~~eiQ 230 (658)
+.... ..-.+-|..|-.|+- +. +++--++. ..-||+..=...+| +-+
T Consensus 73 --i~~~~---~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c----------~~~ 137 (321)
T PF05830_consen 73 --INQFS---FPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRC----------DEE 137 (321)
T ss_dssp --GGT-------SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS-----------HH
T ss_pred --hhhhc---CCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcc----------hhH
Confidence 11000 000111111112221 11 12222222 24577765443333 234
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhh--hhhhhhccccccchhHHHHHHHHHHHhhhccccc
Q 006180 231 RLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVR--ETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVN 308 (658)
Q Consensus 231 rLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~--DMLAfSGC~~~~~~~~~el~~~rr~~~~k~~~~k 308 (658)
..||. |..|+-+++|++..+.+-++-= .|..=|.+|-|.-- |.... +|+ +.|.+.-|.+...
T Consensus 138 aeR~i--f~slkpR~eIqarID~iy~ehf-~g~~~IGVHVRhGngeD~~~h-~~~--~~D~e~~L~~V~~---------- 201 (321)
T PF05830_consen 138 AEREI--FSSLKPRPEIQARIDAIYREHF-AGYSVIGVHVRHGNGEDIMDH-APY--WADEERALRQVCT---------- 201 (321)
T ss_dssp HHHHH--HHHS-B-HHHHHHHHHHHHHHT-TTSEEEEEEE------------------HHHHHHHHHHHH----------
T ss_pred HHHHH--HHhCCCCHHHHHHHHHHHHHHc-CCCceEEEEEeccCCcchhcc-Ccc--ccCchHHHHHHHH----------
Confidence 44444 9999999999999988776432 23457999999521 11111 121 2222111111111
Q ss_pred cccccCchhhcCCCCCCCChHHHHHHHHhcCCCCCceEEEecccccCcccchhhHHHhccCcccccc
Q 006180 309 EELSVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTS 375 (658)
Q Consensus 309 ~~~~i~s~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl~tK~t 375 (658)
....++++=.+.++.|+||+-. ...++-|++.||.+++.+.
T Consensus 202 ----------------------ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k 242 (321)
T PF05830_consen 202 ----------------------AIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPK 242 (321)
T ss_dssp ----------------------HHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----
T ss_pred ----------------------HHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEccc
Confidence 1112345556678999999998 5779999999999887643
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.02 E-value=2.4 Score=45.59 Aligned_cols=173 Identities=17% Similarity=0.278 Sum_probs=95.8
Q ss_pred CCCceEEE-EEcCChhhhHHHHHHHHHHHhhhcceEecccccccccccCCC--CCCCCCccccChH------------HH
Q 006180 89 ENNGFIYA-KVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGIS--YKFKSFSYLYNEE------------QF 153 (658)
Q Consensus 89 ~snGYL~V-~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~w~d~--sd~s~F~DIFDvd------------hF 153 (658)
..||||+. -|-|-+-+|-...--..|.|+.||-|||+|-.-.- +..+ +---.|...|.++ .|
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy---~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dF 103 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEY---KHPETKNLMVPFEFYFQVEPLAKYHRVITMQDF 103 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhc---cCCcccccccchhheeecccHhhhhhheeHHHH
Confidence 46899988 68999999999999999999999999999965321 1111 1112477778765 35
Q ss_pred HHhccCCeE-------EeccCchhHHhhcccC-------CCC-----ccCCCCCCChhh---------HHhhhhhhh---
Q 006180 154 IASLARDVI-------IVKSLPENLKAARKRN-------EFP-----TFKPKVSTSPNY---------YIQEVLPKL--- 202 (658)
Q Consensus 154 I~sL~~DVr-------IVk~LP~~l~~~~~~~-------~~~-----~~~vp~~ss~~y---------Y~~~VLP~L--- 202 (658)
++.|..+.= |--+- ..+....+. +.. .+.| +...-.| |...-...+
T Consensus 104 m~klapthwp~~~Rva~c~k~--a~qr~pdkp~Ch~KeGNPFGPfWDqfhv-sFv~sE~f~~i~Fd~~~~~~~~kW~~kf 180 (386)
T KOG3849|consen 104 MKKLAPTHWPGTPRVAICDKS--AAQRSPDKPGCHSKEGNPFGPFWDQFHV-SFVGSEYFGDIGFDLNQMGSRKKWLEKF 180 (386)
T ss_pred HHHhCcccCCCCcceeeeehh--hhccCCCCCCCcccCCCCCCCchhheEe-eeeccccccccccchhhcchHHHHHhhC
Confidence 555544321 11110 000000000 000 0000 0001111 111111222
Q ss_pred --hccceEEEeecCCCccccCCCCC--hhHHhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhhhhhh
Q 006180 203 --KRTQVIGLILTDGGCLQSILPPS--MSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLA 278 (658)
Q Consensus 203 --kk~~VI~l~~~d~rla~~~LP~~--~~eiQrLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~DMLA 278 (658)
++|-|+.|++.- .-+|-. .-.|||- ||.+.+|.+.|++.+.- ...+||+++|||---|++-
T Consensus 181 p~eeyPVLAf~gAP-----A~FPv~~e~~~lQkY--------l~WS~r~~e~~k~fI~a--~L~rpfvgiHLRng~DWvr 245 (386)
T KOG3849|consen 181 PSEEYPVLAFSGAP-----APFPVKGEVWSLQKY--------LRWSSRITEQAKKFISA--NLARPFVGIHLRNGADWVR 245 (386)
T ss_pred CcccCceeeecCCC-----CCCccccccccHHHH--------HHHHHHHHHHHHHHHHH--hcCcceeEEEeecCchHHH
Confidence 245666665532 223321 1235664 78999999999987753 2456999999999999875
Q ss_pred hhcccc
Q 006180 279 YHGCAE 284 (658)
Q Consensus 279 fSGC~~ 284 (658)
.|.+
T Consensus 246 --aCeh 249 (386)
T KOG3849|consen 246 --ACEH 249 (386)
T ss_pred --HHHH
Confidence 3763
No 4
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=54.28 E-value=35 Score=35.48 Aligned_cols=110 Identities=29% Similarity=0.444 Sum_probs=66.1
Q ss_pred ccchHHHHHHHHHHHHHHhc-CC-CeEEeccchhh-----hhhhhhccc------cccchhHHHHHHHHHHHhhhccccc
Q 006180 242 QFRPEIEILGRLMVERLRAW-GQ-PFLAYHPGLVR-----ETLAYHGCA------ELFQDVHTELIQYRRAQMIRQGIVN 308 (658)
Q Consensus 242 rF~p~IeeLg~~LV~RLR~~-g~-pyIALHLRfE~-----DMLAfSGC~------~~~~~~~~el~~~rr~~~~k~~~~k 308 (658)
+|+|.| .+|.-+|++||.. +. +|.-+||=.|. |=+|-.|-. |..|+ ..+++++-|+.-.|.+
T Consensus 42 ~FVpNi-T~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~~q~-~~~lv~~ir~~Gmk~G--- 116 (224)
T KOG3111|consen 42 HFVPNI-TFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEATQK-PAELVEKIREKGMKVG--- 116 (224)
T ss_pred cccCCc-ccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEeeccC-HHHHHHHHHHcCCeee---
Confidence 355555 4899999999984 32 59999995443 223433332 22233 4566654443211222
Q ss_pred cccccCchhhcCCCCCCCChHHHHHHHHhcCCCCCceEEEecccccCcccchh-------hHHHhccCcc
Q 006180 309 EELSVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLI-------PLRAMFSNLV 371 (658)
Q Consensus 309 ~~~~i~s~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~-------pL~~~FPnl~ 371 (658)
+.++ |=||-|....+.. .-+-.+-.+---=|||++.|. -||+.|||+.
T Consensus 117 --~alk----------PgT~Ve~~~~~~~---~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ 171 (224)
T KOG3111|consen 117 --LALK----------PGTPVEDLEPLAE---HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD 171 (224)
T ss_pred --EEeC----------CCCcHHHHHHhhc---cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCce
Confidence 2222 4588888877765 234444444455699999986 5888999984
No 5
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=31.93 E-value=42 Score=31.64 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHhcCCCCCceEEEecc
Q 006180 323 SCPLMPEEVGILLRAMGYPPKTIIYLAGS 351 (658)
Q Consensus 323 ~CPLTPeEVgl~LrALGf~~~T~IYlAsG 351 (658)
+||||+||+...|++|--+ ....||...
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~ 41 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVC 41 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEee
Confidence 7999999999999999765 466676443
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.66 E-value=47 Score=36.19 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=20.2
Q ss_pred hhheeeeecccccccccCCCCCCccchHHHhhhcccccc
Q 006180 467 ALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYES 505 (658)
Q Consensus 467 ALDYiV~l~SDvFvpt~~~~G~g~~Nma~~v~GHR~Y~G 505 (658)
-+|-.|--.||-||-. -.+.|+.+|---|--.|
T Consensus 336 y~dLaIlGqadhFiGN------CvSsfsafvKRERD~~G 368 (386)
T KOG3849|consen 336 YTDLAILGQADHFIGN------CVSSFSAFVKRERDHAG 368 (386)
T ss_pred hhhhhhhcccchhhhh------hHHHHHHHHhhhhcccC
Confidence 4566677889999821 12256666666665555
No 7
>PF14123 DUF4290: Domain of unknown function (DUF4290)
Probab=25.25 E-value=61 Score=32.95 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=37.2
Q ss_pred hhHHHhccCccccccCCCh--hhhccccCCCCCCCCCCCCCCCcchhHHHHHHHhhcCCCCCCCCCCCCCccccc
Q 006180 361 IPLRAMFSNLVDRTSLCSQ--KEFSDLIGPETSLPQDLFQPPPAKSEKQLKEEWNKAGPRPRPLSPPPDRPIYLH 433 (658)
Q Consensus 361 ~pL~~~FPnl~tK~tLat~--~EL~~f~g~~~~~~~~~~~~p~~~~~~~~~~~w~~~~~rp~~~~~p~~rp~y~~ 433 (658)
+-...|||++-+-...... +-|+=+.+. .|--+.|-+.|.++ .-+.+|.|+|+|..++.|+|
T Consensus 44 ~iM~~l~P~lRd~~Df~hKLWDhL~ImS~F--kLDVD~Py~ip~~e---------~l~~kP~~l~Yp~~~i~yRh 107 (176)
T PF14123_consen 44 EIMGNLNPHLRDVPDFKHKLWDHLFIMSDF--KLDVDSPYPIPSKE---------KLGKKPEPLPYPQNRIKYRH 107 (176)
T ss_pred HHHHhcCCccCCChhHHHHHHHHHHHHhCC--CccCCCCCCCCCHH---------HhccCCCCCCCCCCCCCccc
Confidence 3345577777554432111 223333332 24455666666644 34679999999999999987
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.46 E-value=44 Score=31.30 Aligned_cols=20 Identities=15% Similarity=0.452 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 006180 8 KWVALFVLALSMGSLLVHLS 27 (658)
Q Consensus 8 ~~v~~~~l~ls~~~ll~~~~ 27 (658)
+||+++|||+..|.+|+-++
T Consensus 1 RW~l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFY 20 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHH
Confidence 47777777776666665433
No 9
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=23.91 E-value=55 Score=28.86 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHhcCCCCCceEEEecccccCcccchhhHHHhccCccccccCCChhhhccc
Q 006180 325 PLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKEFSDL 385 (658)
Q Consensus 325 PLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl~tK~tLat~~EL~~f 385 (658)
++|-.+|+-+|+-+.|++ .+|..|+-++|++++++.--+-.+...|
T Consensus 39 ~~T~~Qv~~il~~f~fd~---------------~kl~~lk~l~p~i~D~~n~~~i~~~f~f 84 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFDN---------------DKLKALKLLYPYIVDPQNYYTIIDAFSF 84 (95)
T ss_pred ceeHHHHHHHHHHcCCCH---------------HHHHHHHHHhhhccCHHHHHHHHHHhcC
Confidence 499999999999988864 4699999999999999754444444433
No 10
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=21.42 E-value=62 Score=27.57 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=14.5
Q ss_pred CCCCCCChHHHHHHHHhc
Q 006180 321 NGSCPLMPEEVGILLRAM 338 (658)
Q Consensus 321 ~G~CPLTPeEVgl~LrAL 338 (658)
-|-| +||||-+-+|+++
T Consensus 41 C~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 41 CGDC-ITPEEDREILEAT 57 (60)
T ss_pred hhcc-CCHHHHHHHHHHH
Confidence 4678 9999999999875
Done!