Query 006180
Match_columns 658
No_of_seqs 194 out of 406
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.2 1.6E-10 5.5E-15 121.9 15.4 73 88-164 19-99 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 1.3E-06 4.6E-11 92.3 11.4 170 89-284 6-230 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 84.9 1.8 6.2E-05 47.9 8.0 200 91-370 145-362 (526)
4 2hhc_A NODZ, nodulation fucosy 52.5 13 0.00045 37.5 4.8 40 90-129 3-42 (330)
5 3l32_A Phosphoprotein; antipar 35.5 9.1 0.00031 29.7 0.4 26 240-266 2-27 (45)
6 2hhc_A NODZ, nodulation fucosy 19.1 52 0.0018 33.1 2.5 36 238-274 145-180 (330)
7 1p3q_Q VPS9P, vacuolar protein 17.1 36 0.0012 27.3 0.6 14 358-371 14-27 (54)
8 1l2m_A REP protein; A+B fold, 16.2 1.2E+02 0.004 27.7 3.8 26 323-349 17-42 (118)
9 2eqr_A N-COR1, N-COR, nuclear 15.4 93 0.0032 24.5 2.6 18 321-338 10-27 (61)
10 1wgl_A TOLL-interacting protei 12.4 59 0.002 26.1 0.7 14 357-370 10-23 (59)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.20 E-value=1.6e-10 Score=121.86 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCCCceEEEEEc-C-ChhhhHHHHHHHHHHHhhhcce----EecccccccccccCCC--CCCCCCccccChHHHHHhccC
Q 006180 88 EENNGFIYAKVF-G-GFEKIRSSICDLVTISRLLNAT----LVIPEIQESLRSKGIS--YKFKSFSYLYNEEQFIASLAR 159 (658)
Q Consensus 88 ~~snGYL~V~an-G-GLNQqR~~IcDAVaVARiLNAT----LVIP~Ld~ss~~w~d~--sd~s~F~DIFDvdhFI~sL~~ 159 (658)
...++||+-..| | |+|.||...-.|.++|+.||-| ||||-...-.-|.... +..-.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 356899999875 4 8999999999999999999999 9999664211122221 111259999999864 34
Q ss_pred CeEEe
Q 006180 160 DVIIV 164 (658)
Q Consensus 160 DVrIV 164 (658)
.|+||
T Consensus 95 ~vpVI 99 (408)
T 4ap5_A 95 NIPVI 99 (408)
T ss_dssp TSCEE
T ss_pred hCCee
Confidence 44555
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.38 E-value=1.3e-06 Score=92.30 Aligned_cols=170 Identities=16% Similarity=0.261 Sum_probs=99.5
Q ss_pred CCCceEEE-EEcCChhhhHHHHHHHHHHHhhhcceEecccccccccccCCCCCCCCCccccChHHHHHhccCCeEEeccC
Q 006180 89 ENNGFIYA-KVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSL 167 (658)
Q Consensus 89 ~snGYL~V-~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~w~d~sd~s~F~DIFDvdhFI~sL~~DVrIVk~L 167 (658)
.+||||+- -|-|-+-+|-...--+.+.|+.||-|||||-+-.-.. +. +..-.|++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~-~~~vpf~~yF~v~~----l~~yhrvi~m- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PE-TKMIPFEFLFQVGT----VAKYTRVVTM- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SS-CEEECHHHHBCHHH----HTTTSCEECH-
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Cc-ccccchhheeecch----hhhhceeeeH-
Confidence 46999988 6999999999999999999999999999987653210 11 11123888888875 4444455532
Q ss_pred chhHHhh----------c----------------c------cCCCC-----ccCCCC-----CCC----hhhHHhhhhhh
Q 006180 168 PENLKAA----------R----------------K------RNEFP-----TFKPKV-----STS----PNYYIQEVLPK 201 (658)
Q Consensus 168 P~~l~~~----------~----------------~------~~~~~-----~~~vp~-----~ss----~~yY~~~VLP~ 201 (658)
++++.. | + ..+.. .+.|-- ... -+|-.......
T Consensus 78 -e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~ 156 (362)
T 3zy2_A 78 -QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKK 156 (362)
T ss_dssp -HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------C
T ss_pred -HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHH
Confidence 111100 0 0 00000 000000 000 01100111111
Q ss_pred h------hccceEEEeecCCCccccCCCCC--hhHHhhhhhhhcccccccchHHHHHHHHHHHHHHhcCCCeEEeccchh
Q 006180 202 L------KRTQVIGLILTDGGCLQSILPPS--MSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLV 273 (658)
Q Consensus 202 L------kk~~VI~l~~~d~rla~~~LP~~--~~eiQrLRCRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE 273 (658)
+ .+|=|+.|++. ....|.. .-.||| -|++++.|.+.|++.++.- .++||||+|||-=
T Consensus 157 W~~~~p~~~~pVlAf~ga-----Pa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~--L~rpyVgIHLR~G 221 (362)
T 3zy2_A 157 WLEKFPSEEYPVLAFSSA-----PAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISAN--LAKPFVAVHLRND 221 (362)
T ss_dssp HHHHSCTTTCSEEEESSC-----SSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHH--CCSSEEEEEECCC
T ss_pred HHHhCCcccCceEeecCC-----CCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHh--cCCCeEEEEEecC
Confidence 1 24678888763 3334542 123343 4899999999999998863 3459999999998
Q ss_pred hhhhhhhcccc
Q 006180 274 RETLAYHGCAE 284 (658)
Q Consensus 274 ~DMLAfSGC~~ 284 (658)
.|+.-. |.+
T Consensus 222 ~DW~~a--C~h 230 (362)
T 3zy2_A 222 ADWVRV--CEH 230 (362)
T ss_dssp HHHHHH--HHT
T ss_pred CcHHHH--Hhh
Confidence 888654 664
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=84.92 E-value=1.8 Score=47.91 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=104.6
Q ss_pred CceEEEEE--cCChhhhHHHHHHHHHHHhhhcceEecccccccccccCCCCCCCCCccccChHHHHHhccCCeEEeccCc
Q 006180 91 NGFIYAKV--FGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKSLP 168 (658)
Q Consensus 91 nGYL~V~a--nGGLNQqR~~IcDAVaVARiLNATLVIP~Ld~ss~~w~d~sd~s~F~DIFDvdhFI~sL~~DVrIVk~LP 168 (658)
..||+... ..|+--+-..++=+.++|-.+|-||||-.-. |.-. ...|+++|.. +....... |
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~-----w~Y~--~g~w~~yF~P--~s~~C~~~-------~ 208 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN-----WRYA--TGGWETVFRP--VSETCTDR-------S 208 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT-----CSSC--TTCGGGTBCC--SCSSCCCC-------C
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC-----CCcC--CCCHHHhhhC--cCccccCC-------C
Confidence 47888876 4688888778888899999999999994322 2211 1257777774 11111110 0
Q ss_pred hhHHhhcccCCCCccCCCCCCChhhHHhhhhhhhhccceEEEeecC-----CCccccCCCCC-hhHHhhhh---------
Q 006180 169 ENLKAARKRNEFPTFKPKVSTSPNYYIQEVLPKLKRTQVIGLILTD-----GGCLQSILPPS-MSELQRLR--------- 233 (658)
Q Consensus 169 ~~l~~~~~~~~~~~~~vp~~ss~~yY~~~VLP~Lkk~~VI~l~~~d-----~rla~~~LP~~-~~eiQrLR--------- 233 (658)
. . ....|..... -..+.||.+...+ ..+++..+|.. ...+++|.
T Consensus 209 ~------------~-~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~ 267 (526)
T 2de0_X 209 G------------I-STGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVS 267 (526)
T ss_dssp C------------S-CCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHH
T ss_pred c------------c-ccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHH
Confidence 0 0 0011211100 1244555443322 11222123322 12344442
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhhhhhhhhccccccc-hhHHHHHHHHHHHhhhccccccccc
Q 006180 234 CRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLAYHGCAELFQ-DVHTELIQYRRAQMIRQGIVNEELS 312 (658)
Q Consensus 234 CRvnfhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~DMLAfSGC~~~~~-~~~~el~~~rr~~~~k~~~~k~~~~ 312 (658)
+.+.| -+|+.++|++.-+.+.+.+.- ++|.|++|.|-- |-++.. ..... ++..+.+ ..+ +.
T Consensus 268 q~~~y-l~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E--~~~~~~~~Y~~~v---~~~------~~---- 329 (526)
T 2de0_X 268 QFVKY-LIRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE--AAFHPIEEYMVHV---EEH------FQ---- 329 (526)
T ss_dssp HHHHH-HTCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C--CCSCSHHHHHHHH---HHH------HH----
T ss_pred HHHHH-HcCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc--cccCCHHHHHHHH---HHH------HH----
Confidence 11112 278999999998888887654 569999999963 433211 00011 1111110 000 00
Q ss_pred cCchhhcCCCCCCCChHHHHHHHHhcCCCCCceEEEecccccCcccchhhHHHhccCc
Q 006180 313 VDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNL 370 (658)
Q Consensus 313 i~s~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl 370 (658)
.|+.......+.||||+.. ...++-+++.||+.
T Consensus 330 ---------------------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~ 362 (526)
T 2de0_X 330 ---------------------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNY 362 (526)
T ss_dssp ---------------------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTS
T ss_pred ---------------------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCC
Confidence 1222246778999999998 46678888899986
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=52.47 E-value=13 Score=37.47 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=34.8
Q ss_pred CCceEEEEEcCChhhhHHHHHHHHHHHhhhcceEeccccc
Q 006180 90 NNGFIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQ 129 (658)
Q Consensus 90 snGYL~V~anGGLNQqR~~IcDAVaVARiLNATLVIP~Ld 129 (658)
+..||++...|||-.|=-+++-|-++|.+.|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4679999999999777788999999999999999885443
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=35.47 E-value=9.1 Score=29.74 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCCeE
Q 006180 240 ALQFRPEIEILGRLMVERLRAWGQPFL 266 (658)
Q Consensus 240 ALrF~p~IeeLg~~LV~RLR~~g~pyI 266 (658)
|+-|+.-+.++|.++|+||++- ..|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG-e~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG-ERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT-CCHH
T ss_pred CccHHHHHHHHHHHHHHHHHcc-ccHH
Confidence 4567888999999999999873 3453
No 6
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=19.15 E-value=52 Score=33.13 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=26.9
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhh
Q 006180 238 FHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVR 274 (658)
Q Consensus 238 fhALrF~p~IeeLg~~LV~RLR~~g~pyIALHLRfE~ 274 (658)
|.-|+++++|++..+.+.+.+-. +.++|++|.|.-.
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD 180 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-GHSIIGVHVRHGN 180 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC--
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-CCceEEEEEecCC
Confidence 46789999999988888765322 3589999999643
No 7
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=17.07 E-value=36 Score=27.28 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.5
Q ss_pred cchhhHHHhccCcc
Q 006180 358 RVLIPLRAMFSNLV 371 (658)
Q Consensus 358 ~~L~pL~~~FPnl~ 371 (658)
..+.-|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 35788999999983
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=16.20 E-value=1.2e+02 Score=27.71 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHhcCCCCCceEEEe
Q 006180 323 SCPLMPEEVGILLRAMGYPPKTIIYLA 349 (658)
Q Consensus 323 ~CPLTPeEVgl~LrALGf~~~T~IYlA 349 (658)
.||||+||+.-.|+.|--+.+ ..||.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~ 42 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeee
Confidence 799999999999999986554 44443
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.38 E-value=93 Score=24.49 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=16.6
Q ss_pred CCCCCCChHHHHHHHHhc
Q 006180 321 NGSCPLMPEEVGILLRAM 338 (658)
Q Consensus 321 ~G~CPLTPeEVgl~LrAL 338 (658)
+...|.|++|..+|++++
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 677899999999999998
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=12.38 E-value=59 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.3
Q ss_pred ccchhhHHHhccCc
Q 006180 357 HRVLIPLRAMFSNL 370 (658)
Q Consensus 357 ~~~L~pL~~~FPnl 370 (658)
+..++-|++|||++
T Consensus 10 ee~l~~L~emFP~l 23 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM 23 (59)
T ss_dssp HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHCCCC
Confidence 56788999999998
Done!