Query 006180
Match_columns 658
No_of_seqs 194 out of 406
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 18:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 28.5 22 0.0016 30.4 3.8 26 323-349 17-42 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 20.8 9 0.00066 27.9 -0.2 26 327-352 1-30 (44)
3 d1r03a_ a.25.1.1 (A:) (Apo)fer 19.0 15 0.0011 32.1 0.8 58 233-296 2-60 (171)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 15.7 20 0.0014 27.4 0.7 16 357-372 10-25 (59)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 14.7 21 0.0016 26.7 0.6 15 357-371 13-27 (54)
6 d1fcda2 c.3.1.5 (A:115-255) Fl 12.2 62 0.0045 27.1 3.0 51 322-372 45-99 (141)
7 d1i9sa_ c.45.1.1 (A:) mRNA cap 11.6 63 0.0046 28.3 3.0 18 90-109 114-131 (194)
8 d1sfsa_ c.1.8.8 (A:) Unnamed h 11.5 47 0.0034 30.8 2.1 19 334-352 84-102 (213)
9 d1rhsa1 c.46.1.2 (A:1-149) Rho 11.0 1.9E+02 0.013 24.0 5.8 31 326-356 75-105 (149)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 10.0 51 0.0037 25.2 1.5 58 319-389 14-71 (75)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=28.46 E-value=22 Score=30.40 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHhcCCCCCceEEEe
Q 006180 323 SCPLMPEEVGILLRAMGYPPKTIIYLA 349 (658)
Q Consensus 323 ~CPLTPeEVgl~LrALGf~~~T~IYlA 349 (658)
+||||+||+.-.|+.|==+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 79999999999999997766654 444
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.80 E-value=9 Score=27.94 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=19.3
Q ss_pred ChHHHHH--HHHhcCCCCCc--eEEEeccc
Q 006180 327 MPEEVGI--LLRAMGYPPKT--IIYLAGSE 352 (658)
Q Consensus 327 TPeEVgl--~LrALGf~~~T--~IYlAsGe 352 (658)
||+|..- -|.+|||+.+. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 5666443 48899999998 46888766
No 3
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}
Probab=18.95 E-value=15 Score=32.06 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=38.4
Q ss_pred hhhhcccccccchHHHHHHHHHHHH-HHhcCCCeEEeccchhhhhhhhhccccccchhHHHHHHH
Q 006180 233 RCRVAFHALQFRPEIEILGRLMVER-LRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELIQY 296 (658)
Q Consensus 233 RCRvnfhALrF~p~IeeLg~~LV~R-LR~~g~pyIALHLRfE~DMLAfSGC~~~~~~~~~el~~~ 296 (658)
|||-|| .|++++.-+..+.. |.+. -.|+++=-=|..|.+++.||+..|.....|..++
T Consensus 2 ~~r~n~-----~~e~e~aLN~qi~~El~as-~~Yl~ma~~f~~~~~~l~g~a~~f~~~a~EE~~H 60 (171)
T d1r03a_ 2 RVRQNF-----HPDSEAAINRQINLELYAS-YVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 60 (171)
T ss_dssp TTCCSC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 577776 58999777766654 4443 3565555556778889999988777655544443
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.72 E-value=20 Score=27.37 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.2
Q ss_pred ccchhhHHHhccCccc
Q 006180 357 HRVLIPLRAMFSNLVD 372 (658)
Q Consensus 357 ~~~L~pL~~~FPnl~t 372 (658)
+..|.-|++|||++..
T Consensus 10 Ee~i~~LkeMFP~~D~ 25 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQ 25 (59)
T ss_dssp HHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHCCCCCH
Confidence 4568999999999853
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.71 E-value=21 Score=26.72 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.2
Q ss_pred ccchhhHHHhccCcc
Q 006180 357 HRVLIPLRAMFSNLV 371 (658)
Q Consensus 357 ~~~L~pL~~~FPnl~ 371 (658)
+..++-|++|||++-
T Consensus 13 ~e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 345889999999984
No 6
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=12.15 E-value=62 Score=27.10 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCCCChHHHHHHH----HhcCCCCCceEEEecccccCcccchhhHHHhccCccc
Q 006180 322 GSCPLMPEEVGILL----RAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVD 372 (658)
Q Consensus 322 G~CPLTPeEVgl~L----rALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl~t 372 (658)
=+||=-|.|+++|+ |.-|-..++.|..+......+......+.+++..+..
T Consensus 45 ~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (141)
T d1fcda2 45 FRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTE 99 (141)
T ss_dssp CSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTS
T ss_pred ccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHH
Confidence 48999999999887 7789999998887776654333333445556655444
No 7
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.59 E-value=63 Score=28.32 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.3
Q ss_pred CCceEEEEEcCChhhhHHHH
Q 006180 90 NNGFIYAKVFGGFEKIRSSI 109 (658)
Q Consensus 90 snGYL~V~anGGLNQqR~~I 109 (658)
.++-++|+|.+|.+ |++.
T Consensus 114 ~~~~V~VHC~~G~~--Rsg~ 131 (194)
T d1i9sa_ 114 PPELIGVHCTHGFN--RTGF 131 (194)
T ss_dssp -CCEEEEECSSSSH--HHHH
T ss_pred CCCeEEEECCCCCC--ccHH
Confidence 56899999999999 8884
No 8
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.47 E-value=47 Score=30.76 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=16.1
Q ss_pred HHHhcCCCCCceEEEeccc
Q 006180 334 LLRAMGYPPKTIIYLAGSE 352 (658)
Q Consensus 334 ~LrALGf~~~T~IYlAsGe 352 (658)
.=++||||+.|.||++=-.
T Consensus 84 ~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 84 HARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHTTCCSSCEEEEECCT
T ss_pred HHHHcCCCCCCEEEEEecc
Confidence 4578999999999998754
No 9
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.97 E-value=1.9e+02 Score=23.99 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=25.6
Q ss_pred CChHHHHHHHHhcCCCCCceEEEecccccCc
Q 006180 326 LMPEEVGILLRAMGYPPKTIIYLAGSETFGG 356 (658)
Q Consensus 326 LTPeEVgl~LrALGf~~~T~IYlAsGeIyGG 356 (658)
.++++..-.|+++|..++++|.|-.+.-.||
T Consensus 75 ~~~~~~~~~l~~~Gi~~~~~vVvy~~~~~~~ 105 (149)
T d1rhsa1 75 PSEAGFADYVGSLGISNDTHVVVYDGDDLGS 105 (149)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCCSSSC
T ss_pred hhhHHHHHHHhhhhccCCceeEEeeccCCcc
Confidence 6789999999999999999988877654443
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=10.00 E-value=51 Score=25.23 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=34.0
Q ss_pred cCCCCCCCChHHHHHHHHhcCCCCCceEEEecccccCcccchhhHHHhccCccccccCCChhhhccccCCC
Q 006180 319 RDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKEFSDLIGPE 389 (658)
Q Consensus 319 R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAsGeIyGG~~~L~pL~~~FPnl~tK~tLat~~EL~~f~g~~ 389 (658)
+..|.. ++++|+.-+|+.|||.-+ +.++.+ .--.|--. +.+.....| .||++.++|++
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~~~-----~~~~~~---~V~vPs~R--~Di~~~~Dl--iEEi~R~~Gyd 71 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCRVE-----GEGPTY---RVTPPSHR--LDLRLEEDL--VEEVARIQGYE 71 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCEEE-----CSSSSE---EEECCTTC--TTCCSHHHH--HHHHHHHHCGG
T ss_pred HHhCCC-CCHHHHHHHHHHcCCceE-----ecCCcE---EEecchhc--cccCCcchH--HHHHHHHhCcc
Confidence 445665 999999999999999632 111110 11112111 455555555 37778887763
Done!