Query 006181
Match_columns 658
No_of_seqs 278 out of 1371
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 19:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 3.2E-65 6.9E-70 550.2 28.7 306 23-353 105-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 1.4E-55 3E-60 463.9 30.8 304 26-351 1-304 (304)
3 cd02668 Peptidase_C19L A subfa 100.0 1.6E-55 3.5E-60 470.2 29.6 298 28-351 1-324 (324)
4 cd02663 Peptidase_C19G A subfa 100.0 2E-55 4.3E-60 464.6 28.7 286 28-351 1-300 (300)
5 cd02660 Peptidase_C19D A subfa 100.0 3.9E-55 8.5E-60 467.0 30.8 301 27-351 1-328 (328)
6 cd02664 Peptidase_C19H A subfa 100.0 5.7E-55 1.2E-59 466.7 26.6 276 28-351 1-327 (327)
7 cd02671 Peptidase_C19O A subfa 100.0 1.9E-54 4.1E-59 462.6 28.1 280 19-351 17-332 (332)
8 cd02667 Peptidase_C19K A subfa 100.0 1.6E-53 3.4E-58 445.8 25.0 246 28-351 1-279 (279)
9 cd02659 peptidase_C19C A subfa 100.0 1.2E-52 2.6E-57 449.0 28.5 295 26-354 2-333 (334)
10 cd02658 Peptidase_C19B A subfa 100.0 1.5E-52 3.2E-57 444.4 27.6 277 28-351 1-311 (311)
11 cd02657 Peptidase_C19A A subfa 100.0 1.9E-52 4.1E-57 442.1 27.1 283 28-351 1-305 (305)
12 cd02669 Peptidase_C19M A subfa 100.0 7.1E-50 1.5E-54 442.9 28.9 293 26-351 119-440 (440)
13 COG5560 UBP12 Ubiquitin C-term 100.0 7.9E-50 1.7E-54 430.6 14.7 323 23-354 263-823 (823)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 3.9E-48 8.5E-53 388.5 19.3 331 15-353 60-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 3.7E-47 8.1E-52 389.3 23.0 209 28-351 1-240 (240)
16 cd02674 Peptidase_C19R A subfa 100.0 7E-45 1.5E-49 368.3 20.5 200 121-351 21-230 (230)
17 COG5077 Ubiquitin carboxyl-ter 100.0 3.4E-46 7.4E-51 407.7 7.5 311 9-359 177-517 (1089)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 1.3E-45 2.7E-50 403.3 4.3 319 9-360 79-441 (944)
19 PF00443 UCH: Ubiquitin carbox 100.0 2.7E-42 5.8E-47 352.4 24.9 256 26-350 1-269 (269)
20 cd02666 Peptidase_C19J A subfa 100.0 5.7E-43 1.2E-47 374.4 17.5 285 26-351 1-343 (343)
21 KOG1868 Ubiquitin C-terminal h 100.0 2.9E-43 6.4E-48 396.0 14.6 328 21-357 296-650 (653)
22 KOG0944 Ubiquitin-specific pro 100.0 4.3E-42 9.3E-47 374.0 18.3 312 4-354 280-763 (763)
23 cd02665 Peptidase_C19I A subfa 100.0 1.8E-41 4E-46 342.3 17.6 197 121-351 21-228 (228)
24 cd02673 Peptidase_C19Q A subfa 100.0 1.2E-40 2.5E-45 341.6 20.9 215 113-351 24-245 (245)
25 cd02257 Peptidase_C19 Peptidas 100.0 1.5E-39 3.3E-44 327.0 22.4 215 121-351 21-255 (255)
26 KOG1867 Ubiquitin-specific pro 100.0 1.5E-39 3.3E-44 359.9 17.3 309 26-356 161-487 (492)
27 KOG4598 Putative ubiquitin-spe 100.0 6.3E-41 1.4E-45 362.6 3.1 265 26-357 87-445 (1203)
28 COG5207 UBP14 Isopeptidase T [ 100.0 3.7E-37 8E-42 325.3 17.4 314 4-352 276-748 (749)
29 KOG1863 Ubiquitin carboxyl-ter 100.0 2.8E-37 6.1E-42 371.8 14.2 303 19-357 163-489 (1093)
30 cd02672 Peptidase_C19P A subfa 100.0 3.2E-36 7E-41 312.8 14.1 233 24-351 13-268 (268)
31 KOG1873 Ubiquitin-specific pro 100.0 2.8E-36 6.1E-41 331.3 10.0 325 26-353 205-877 (877)
32 PF13423 UCH_1: Ubiquitin carb 100.0 4.5E-33 9.7E-38 293.7 23.6 280 27-332 1-295 (295)
33 KOG1870 Ubiquitin C-terminal h 100.0 2.2E-34 4.8E-39 339.1 14.5 321 23-354 244-842 (842)
34 cd02670 Peptidase_C19N A subfa 100.0 1.9E-31 4.2E-36 271.7 14.6 176 121-351 22-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 1.4E-31 3E-36 301.0 14.5 317 27-354 233-573 (587)
36 KOG1871 Ubiquitin-specific pro 100.0 4.4E-28 9.5E-33 251.8 12.8 315 24-354 26-420 (420)
37 KOG1872 Ubiquitin-specific pro 99.9 6.7E-28 1.4E-32 256.5 6.4 299 23-353 102-469 (473)
38 KOG2026 Spindle pole body prot 99.9 7E-23 1.5E-27 212.3 10.7 289 27-353 135-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 1.9E-18 4.1E-23 194.3 15.3 299 25-350 498-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.4 1.4E-06 3E-11 88.0 10.4 130 167-331 120-252 (275)
41 PF10163 EnY2: Transcription f 97.1 0.002 4.2E-08 55.7 7.9 70 573-649 16-85 (86)
42 KOG1864 Ubiquitin-specific pro 97.0 0.0014 3.1E-08 75.3 7.3 112 29-140 34-152 (587)
43 KOG3556 Familial cylindromatos 96.6 0.00076 1.6E-08 73.9 1.1 105 23-138 365-472 (724)
44 KOG1887 Ubiquitin carboxyl-ter 96.4 0.00074 1.6E-08 78.0 -0.7 218 121-353 548-790 (806)
45 PF08715 Viral_protease: Papai 95.1 0.26 5.6E-06 52.8 12.5 76 27-138 103-179 (320)
46 KOG4479 Transcription factor e 94.9 0.091 2E-06 44.1 6.4 63 581-650 25-87 (92)
47 PF05408 Peptidase_C28: Foot-a 88.6 0.2 4.3E-06 48.8 1.2 53 298-360 130-182 (193)
48 PF05408 Peptidase_C28: Foot-a 78.6 7.9 0.00017 38.0 7.3 22 27-48 34-55 (193)
49 PF14353 CpXC: CpXC protein 62.8 9.7 0.00021 35.1 4.0 48 181-238 1-48 (128)
50 COG3478 Predicted nucleic-acid 45.0 19 0.00042 29.3 2.4 36 227-262 3-40 (68)
51 PF03292 Pox_P4B: Poxvirus P4B 39.1 43 0.00093 38.7 4.9 70 251-332 479-570 (666)
52 PF02099 Josephin: Josephin; 32.5 54 0.0012 31.6 3.9 32 297-334 99-130 (157)
53 PF01473 CW_binding_1: Putativ 24.8 73 0.0016 19.2 2.1 14 316-330 3-16 (19)
54 KOG2906 RNA polymerase III sub 23.9 1.9E+02 0.0042 25.7 5.3 72 175-249 15-86 (105)
55 cd01269 PLX Pollux (PLX) Phosp 21.8 2.5E+02 0.0054 26.1 5.8 27 293-319 81-107 (129)
56 TIGR00373 conserved hypothetic 20.7 2.1E+02 0.0045 27.5 5.5 21 124-144 78-98 (158)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-65 Score=550.23 Aligned_cols=306 Identities=44% Similarity=0.804 Sum_probs=285.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006181 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.+.+.||.|+|||||+||+||||.++||+.+||+...+...| . +...|++|.++..+.+.+...+..+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C-----~------~~~~C~lc~~q~hi~~A~~~~g~pis 173 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSC-----H------RAKFCMLCTFQAHITRALHNPGHPIS 173 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhc-----c------ccCeeeehHHHHHHHHHhcCCCCccC
Confidence 466789999999999999999999999999999999988777 3 37789999999999999999988999
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 006181 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i 182 (658)
|..|+..|+.+...|+.|+|+||||||+++++.|+..|..-... ........++|+++|+|.+++++
T Consensus 174 P~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~-------------~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 174 PSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ-------------VDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred hHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc-------------CCcccccceehhhhhccchhhce
Confidence 99999999999999999999999999999999999988622211 11224567899999999999999
Q ss_pred EeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee
Q 006181 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 183 ~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
+|..|.+++.++|+.++|+|+|....+|+++|+.|+..|.|+|+|+|+|++|+++..|.|+++|.++|+||+|+||||+.
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~ 320 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN 320 (545)
T ss_pred ecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcC
Q 006181 263 IFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS 342 (658)
Q Consensus 263 ~~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s 342 (658)
...+|+.+.|.||++|||.+||+. ..+...+|.|+|||+|.|.+..+|||+||||...|.||.+||+.|+.++.+.|++
T Consensus 321 ~~~gKI~K~I~fPE~LDl~PyMS~-~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs 399 (545)
T KOG1865|consen 321 GTGGKISKPVSFPETLDLQPYMSQ-PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS 399 (545)
T ss_pred CcccccccccCCcccccccccccC-CCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence 888999999999999999999993 3457789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEc
Q 006181 343 EKVYILFFIRA 353 (658)
Q Consensus 343 ~~aYmLfY~R~ 353 (658)
++||||||.|.
T Consensus 400 q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 QQAYILFYARK 410 (545)
T ss_pred ccceEEEEEee
Confidence 99999999998
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-55 Score=463.85 Aligned_cols=304 Identities=50% Similarity=0.867 Sum_probs=269.0
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
|+||.|+||||||||+||+|+++|+||++++...+...+ .....|++|++..++.+++......+.|..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ 69 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC-----------CNEGFCMMCALEAHVERALASSGPGSAPRI 69 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc-----------cCCcchHHHHHHHHHHHHHhCCCCccChHH
Confidence 689999999999999999999999999999875543211 123458999999999999888888999999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~ 185 (658)
|..++....+.|..+.||||+|||.+||+.|+.++........ .........+++.++|+|.+.+.++|.
T Consensus 70 ~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~i~~~F~g~~~~~~~C~ 139 (304)
T cd02661 70 FSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLK----------AVDPSSQETTLVQQIFGGYLRSQVKCL 139 (304)
T ss_pred HHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhccccc----------ccCccccCCChhhhcCCcEEeeeEEeC
Confidence 9999999999999999999999999999999988654322110 001112345799999999999999999
Q ss_pred CCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeeccC
Q 006181 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
.|+..+.+.+.|+.|+|++++..+|+++|+.++.+|.++++++|.|++|++...+.++..|.++|++|+|+|+||.++..
T Consensus 140 ~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~ 219 (304)
T cd02661 140 NCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG 219 (304)
T ss_pred CCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999998756
Q ss_pred CccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcCCCe
Q 006181 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKV 345 (658)
Q Consensus 266 ~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~a 345 (658)
.|+.+.|.||++|+|.+|+... ......|+|+|||+|.|.+.++|||++|+|+.+++||+|||+.|+++++++|+++.|
T Consensus 220 ~Ki~~~v~f~~~L~l~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~a 298 (304)
T cd02661 220 GKINKQISFPETLDLSPYMSQP-NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKA 298 (304)
T ss_pred cccCCeEecCCeechhhccccC-CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCc
Confidence 8999999999999999998753 245679999999999997679999999999988999999999999999999999999
Q ss_pred EEEEEE
Q 006181 346 YILFFI 351 (658)
Q Consensus 346 YmLfY~ 351 (658)
|||||.
T Consensus 299 Yil~Y~ 304 (304)
T cd02661 299 YILFYI 304 (304)
T ss_pred EEEEeC
Confidence 999994
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-55 Score=470.20 Aligned_cols=298 Identities=26% Similarity=0.445 Sum_probs=254.3
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHHHH
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++...........+ .. .+......+++++|+.+|..++.+....++|..|.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKN-MP-PDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCccccccccc-cc-ccCCcccchHHHHHHHHHHHHHhCCCceEChHHHH
Confidence 89999999999999999999999999998765432110000 00 00011235789999999999998888899999999
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 006181 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C 187 (658)
.++. |..++||||+||+.+||+.|++++..... ....++|.++|.|.+...++|..|
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~------------------~~~~~~i~~~F~G~~~~~~~C~~C 135 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN------------------PDLKNIVQDLFRGEYSYVTQCSKC 135 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC------------------CcccchhhhhcceEEEEEEEeCCC
Confidence 8874 56789999999999999999988653210 123478999999999999999999
Q ss_pred CCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc---
Q 006181 188 GAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--- 264 (658)
Q Consensus 188 ~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--- 264 (658)
+..+.+.|+|+.|+|++++..+|+++|+.|+.+|.++|+++|.|++|+....+.++..|.++|+||+|||+||.++.
T Consensus 136 ~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~ 215 (324)
T cd02668 136 GRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTG 215 (324)
T ss_pred CCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEEeCceeeeechhhh--
Q 006181 265 -GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEV-- 340 (658)
Q Consensus 265 -~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~is~eev-- 340 (658)
..|+++.|.||+.|||.+|+.... .....|+|+|||+|.|.++++|||+||+|+. +++||+|||+.|++++++.+
T Consensus 216 ~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~ 294 (324)
T cd02668 216 AKKKLNASISFPEILDMGEYLAESD-EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL 294 (324)
T ss_pred cceeCCcEEECCCeEechhhccccc-CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhc
Confidence 369999999999999999986543 4567899999999999778999999999985 58999999999999987765
Q ss_pred -------------------cCCCeEEEEEE
Q 006181 341 -------------------LSEKVYILFFI 351 (658)
Q Consensus 341 -------------------~s~~aYmLfY~ 351 (658)
.+..||||||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 295 GNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccccccccccCCCccccCceEEEEeC
Confidence 24689999996
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-55 Score=464.65 Aligned_cols=286 Identities=30% Similarity=0.482 Sum_probs=246.6
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC--CccChHH
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLDAPAK 105 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~--~~i~p~~ 105 (658)
||.|+||||||||+||+|++ .++++.|..+|..++.... ..++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------------ENLLTCLKDLFESISEQKKRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHH
Confidence 89999999999999999987 1245677778888876543 5699999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~ 185 (658)
|+++|....+.|..++||||+|||..||+.|++++....+..... .............++|.++|+|.+.+.++|.
T Consensus 49 f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 49 FITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN----RKLNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc----ccccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 999999989999999999999999999999999987654322111 0000111122346789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc-
Q 006181 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~- 264 (658)
.|+..+.+.|+|++|+|+++...+|+++|+.|+.+|.++++++|.|++|+..+.+.|+..|.++|+||+|||+||.++.
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~ 204 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ 204 (300)
T ss_pred CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred ---CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhc
Q 006181 265 ---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVL 341 (658)
Q Consensus 265 ---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~ 341 (658)
..|++..|.||..|+|..+.... ......|+|+|||+|.|.++++|||+||+|+ .+.||+|||+.|+++++++|.
T Consensus 205 ~~~~~Ki~~~v~fp~~L~~~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~ 282 (300)
T cd02663 205 LNRYIKLFYRVVFPLELRLFNTTDDA-ENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVE 282 (300)
T ss_pred cCCceecCceEecCcEEecccccccc-CCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHH
Confidence 36999999999999998774322 2346799999999999976899999999999 899999999999999999886
Q ss_pred --------CCCeEEEEEE
Q 006181 342 --------SEKVYILFFI 351 (658)
Q Consensus 342 --------s~~aYmLfY~ 351 (658)
+.+||||||+
T Consensus 283 ~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 283 EFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred HhcCCCCCCCceEEEEeC
Confidence 5789999995
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-55 Score=467.03 Aligned_cols=301 Identities=33% Similarity=0.585 Sum_probs=260.8
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcC-CCCccChHH
Q 006181 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLTLDAPAK 105 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~-~~~~i~p~~ 105 (658)
+||.|+||||||||+||+|+++|+||++++...+...+ .......|+.|+|..++..++.. ....+.|..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 71 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTC---------LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPIN 71 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccc---------ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHH
Confidence 59999999999999999999999999999986543211 01224568999999999998443 446789999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~ 185 (658)
|+.++....+.|..+.||||+|||.+||+.|++++....+.. .......++|.++|+|.+...++|.
T Consensus 72 ~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-------------~~~~~~~~~i~~~F~g~~~~~~~C~ 138 (328)
T cd02660 72 LLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-------------NDESHCNCIIHQTFSGSLQSSVTCQ 138 (328)
T ss_pred HHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccc-------------cccccCCceeEEecccEEEeeeEcC
Confidence 999998888889999999999999999999999875432210 0011335789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeecccc---------------hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCC
Q 006181 186 ACGAESNKVDEIMDISLDILNS---------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~---------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP 250 (658)
.|++.+.+.++|+.|+|+++.. .+|+++|+.|+.+|.+++.+ |.|++|+....+.++..|.++|
T Consensus 139 ~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP 217 (328)
T cd02660 139 RCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLP 217 (328)
T ss_pred CCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCC
Confidence 9999999999999999999875 89999999999999999877 9999999999999999999999
Q ss_pred ceeEEEEeeeeecc---CCccceeEeccceeeccccccc--------CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc
Q 006181 251 NILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCK--------ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD 319 (658)
Q Consensus 251 ~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~--------~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~ 319 (658)
++|+|||+||.++. ..|+...|.||.+|||.+|+.. ........|+|+|||+|.| +.++|||++|+|.
T Consensus 218 ~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~ 296 (328)
T cd02660 218 PVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQ 296 (328)
T ss_pred ceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEEC
Confidence 99999999999854 3699999999999999999874 2234567999999999999 5889999999999
Q ss_pred CCCceEEEeCceeeeechhhhcCCCeEEEEEE
Q 006181 320 AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 320 ~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~ 351 (658)
.+++||+|||+.|+++++++|+...||||||.
T Consensus 297 ~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 297 GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 77999999999999999999999999999994
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-55 Score=466.67 Aligned_cols=276 Identities=33% Similarity=0.635 Sum_probs=238.9
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH-H
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK-I 106 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~-l 106 (658)
||.|+||||||||+||+|+++|+||++++....... ....+.+++++.++..+.......+.|.. +
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~-------------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~ 67 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL-------------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYF 67 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc-------------CCcchHHHHHHHHHHHHhhcCCcccCCHHHH
Confidence 899999999999999999999999999998754211 12234667788877777666555666665 6
Q ss_pred HHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCC
Q 006181 107 QSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLA 186 (658)
Q Consensus 107 ~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~ 186 (658)
..++. .+.|..++||||+||+..||+.|+. +|.++|+|.+.+.++|..
T Consensus 68 l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~------------------------------~i~~~F~G~~~~~i~C~~ 115 (327)
T cd02664 68 LEASR--PPWFTPGSQQDCSEYLRYLLDRLHT------------------------------LIEKMFGGKLSTTIRCLN 115 (327)
T ss_pred HHHhc--ccccCCCCcCCHHHHHHHHHHHHHH------------------------------HHHhhCcEEeEeEEEcCC
Confidence 55543 4678889999999999999999982 477899999999999999
Q ss_pred CCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeeccC-
Q 006181 187 CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG- 265 (658)
Q Consensus 187 C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~- 265 (658)
|+..+.+.|+|..|+|+++ +|+++|+.|+.+|.++|+++|+|++|++.+.+.++..|.++|+||+|||+||.++..
T Consensus 116 C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~ 192 (327)
T cd02664 116 CNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKT 192 (327)
T ss_pred CCCEecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcccc
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999998542
Q ss_pred ---CccceeEeccceeecccccccC------------------CCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC---
Q 006181 266 ---GKIDKAIAFEEVLVLSSFMCKA------------------SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI--- 321 (658)
Q Consensus 266 ---~Ki~~~V~fP~~LdL~~~~~~~------------------~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~--- 321 (658)
.|+++.|.||..|||..++... .......|+|+|||+|.|.++++|||+||+|...
T Consensus 193 ~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~ 272 (327)
T cd02664 193 HVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDAD 272 (327)
T ss_pred CcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccc
Confidence 5999999999999999886311 1124578999999999997789999999999854
Q ss_pred ------------------CceEEEeCceeeeechhhhcC-------CCeEEEEEE
Q 006181 322 ------------------GRWYCCNDSYVSVSTLQEVLS-------EKVYILFFI 351 (658)
Q Consensus 322 ------------------~~Wy~fNDs~Vt~is~eev~s-------~~aYmLfY~ 351 (658)
+.||+|||+.|++++.++|.+ .+||||||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 273 STGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 799999999999999999986 899999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-54 Score=462.60 Aligned_cols=280 Identities=30% Similarity=0.480 Sum_probs=237.3
Q ss_pred cccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC
Q 006181 19 KRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL 98 (658)
Q Consensus 19 ~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~ 98 (658)
+|+..-+++||.|+||||||||+||+|+++|+||+++......... ......+...+..++....
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~---------------~~~~q~~~~~l~~~~~~~~ 81 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISS---------------VEQLQSSFLLNPEKYNDEL 81 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCc---------------HHHHHHHHHHHHHHHhhcc
Confidence 4555555699999999999999999999999999998765311100 0011112222333344444
Q ss_pred CccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEE
Q 006181 99 TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGAL 178 (658)
Q Consensus 99 ~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l 178 (658)
....|..|+.+++..++.|..++||||+|||..||+.|+. .|.++|+|.+
T Consensus 82 ~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~------------------------------~i~~~F~g~~ 131 (332)
T cd02671 82 ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE------------------------------LVEKDFQGQL 131 (332)
T ss_pred cccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH------------------------------HHHhhhceEE
Confidence 5567999999999999999999999999999999999984 4678999999
Q ss_pred EEEEEeCCCCCeeceeeeeeeEEeecccc-------------------hhHHHHHHhccccccccCCCccccccCCCcce
Q 006181 179 QSQVKCLACGAESNKVDEIMDISLDILNS-------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 179 ~~~i~C~~C~~~S~~~E~f~~LsL~i~~~-------------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (658)
...++|..|+..+.+.|+|++|+|+++.. .+|+++|+.|+.+|.++|+|+|+|++|+..+.
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~ 211 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTE 211 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCcee
Confidence 99999999999999999999999999864 58999999999999999999999999999999
Q ss_pred eEEEEEEecCCceeEEEEeeeeecc--------CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCC
Q 006181 240 ARKQMSILQSPNILVIQLKRFEGIF--------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 311 (658)
Q Consensus 240 a~K~~~I~~lP~iLiI~LkRF~~~~--------~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sG 311 (658)
+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|++.++... .....|+|+|||+|.|.+.++|
T Consensus 212 a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---~~~~~Y~L~~VI~H~G~~~~~G 288 (332)
T cd02671 212 AERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK---PKNDVYRLFAVVMHSGATISSG 288 (332)
T ss_pred EEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC---CCCCeEEEEEEEEEcCCCCCCC
Confidence 9999999999999999999999631 3699999999999999877543 3467999999999999778999
Q ss_pred cEEEEEEcCCCceEEEeCceeeeechhhhc---------CCCeEEEEEE
Q 006181 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVL---------SEKVYILFFI 351 (658)
Q Consensus 312 HYvayvr~~~~~Wy~fNDs~Vt~is~eev~---------s~~aYmLfY~ 351 (658)
||+||+| ||+|||+.|+.++++++. ..+||||||+
T Consensus 289 HY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 289 HYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred eEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999999 999999999999987775 2689999995
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-53 Score=445.80 Aligned_cols=246 Identities=39% Similarity=0.727 Sum_probs=223.1
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHHHH
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++. .|..|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------------------~P~~~~ 36 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------------------TPKELF 36 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------------CHHHHH
Confidence 899999999999999999999999999874 556666
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 006181 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C 187 (658)
..+....+.|..++||||+|||.+||+.|+. +|.++|.|++.+.++|..|
T Consensus 37 ~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~------------------------------~i~~~F~G~~~~~i~C~~C 86 (279)
T cd02667 37 SQVCRKAPQFKGYQQQDSHELLRYLLDGLRT------------------------------FIDSIFGGELTSTIMCESC 86 (279)
T ss_pred HHHHHhhHhhcCCchhhHHHHHHHHHHHHHH------------------------------hhhhhcceEEEEEEEcCCC
Confidence 7777777889999999999999999999982 4778999999999999999
Q ss_pred CCeeceeeeeeeEEeeccc----chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeec
Q 006181 188 GAESNKVDEIMDISLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (658)
Q Consensus 188 ~~~S~~~E~f~~LsL~i~~----~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~ 263 (658)
+..+.+.|+|+.|+|+++. ..+|+++|+.|+.+|.++++++|.|++|++ +.++..|.++|++|+|||+||.++
T Consensus 87 ~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~ 163 (279)
T cd02667 87 GTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQP 163 (279)
T ss_pred CCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccC
Confidence 9999999999999998753 578999999999999999999999999987 889999999999999999999985
Q ss_pred cC---CccceeEeccceeecccccccC----CCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC----------------
Q 006181 264 FG---GKIDKAIAFEEVLVLSSFMCKA----SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---------------- 320 (658)
Q Consensus 264 ~~---~Ki~~~V~fP~~LdL~~~~~~~----~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~---------------- 320 (658)
.. .|+++.|.||+.|||.+|+... .......|+|+|||+|.|. .++|||+||+|..
T Consensus 164 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~ 242 (279)
T cd02667 164 RSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAA 242 (279)
T ss_pred cccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCC-CCCCEeEEEEEcCcccccccccccccccc
Confidence 43 7999999999999999998762 1235679999999999995 5999999999973
Q ss_pred ------CCceEEEeCceeeeechhhhcCCCeEEEEEE
Q 006181 321 ------IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 321 ------~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~ 351 (658)
.+.||+|||+.|++++.++|++..||||||+
T Consensus 243 ~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 243 DEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred ccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 5899999999999999999999999999995
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-52 Score=449.02 Aligned_cols=295 Identities=29% Similarity=0.513 Sum_probs=250.4
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
++||.|+||||||||+||+|+++|+||++++...... ......++.+.++.+|..+.......+.|..
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~------------~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~ 69 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE------------DDDDNKSVPLALQRLFLFLQLSESPVKTTEL 69 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc------------cCcccccHHHHHHHHHHHHHhCCccccCcch
Confidence 4899999999999999999999999999999863211 0113456888999999888876655555555
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~ 185 (658)
+..+.......|..++||||+||+..|++.|+.++... ...++|.++|.|.+...++|.
T Consensus 70 ~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------~~~~~i~~lF~g~~~~~~~C~ 128 (334)
T cd02659 70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT---------------------GQEGLIKNLFGGKLVNYIICK 128 (334)
T ss_pred hheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC---------------------cccchhhhhCceEEEeEEEec
Confidence 44222222356778999999999999999999876321 123689999999999999999
Q ss_pred CCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc-
Q 006181 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~- 264 (658)
.|+..+...++|+.|+|++++..+|+++|+.|+.+|.+++.+.|.|++|++...+.++..|.++|++|+|+|+||.++.
T Consensus 129 ~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~ 208 (334)
T cd02659 129 ECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFE 208 (334)
T ss_pred CCCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccc
Confidence 9999999999999999999998999999999999999999999999999999999999999999999999999999742
Q ss_pred ---CCccceeEeccceeecccccccCC----------CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCc
Q 006181 265 ---GGKIDKAIAFEEVLVLSSFMCKAS----------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDS 330 (658)
Q Consensus 265 ---~~Ki~~~V~fP~~LdL~~~~~~~~----------~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs 330 (658)
..|++..|.||..|+|.+|+.... ......|+|+|||+|.| +.++|||+||+|. +++.||+|||+
T Consensus 209 ~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~ 287 (334)
T cd02659 209 TMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDD 287 (334)
T ss_pred cCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCc
Confidence 368899999999999999987542 23567899999999999 6899999999998 47999999999
Q ss_pred eeeeechhhhc----------------------CCCeEEEEEEEcC
Q 006181 331 YVSVSTLQEVL----------------------SEKVYILFFIRAN 354 (658)
Q Consensus 331 ~Vt~is~eev~----------------------s~~aYmLfY~R~~ 354 (658)
.|+++++++|+ +..||||||+|.+
T Consensus 288 ~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 288 VVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999985 2469999999965
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-52 Score=444.38 Aligned_cols=277 Identities=31% Similarity=0.427 Sum_probs=239.3
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCC----------
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD---------- 97 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~---------- 97 (658)
||.|+||||||||+||+|+++|+||++++.......+ .......+++|++.+++..++...
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 71 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPS---------DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSE 71 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCC---------CcCCccccHHHHHHHHHHHhcCCCcCCCcccccc
Confidence 8999999999999999999999999999874322111 011245578999999888876543
Q ss_pred ----CCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccc
Q 006181 98 ----LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEI 173 (658)
Q Consensus 98 ----~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~l 173 (658)
...+.|..|..++....+.|..++||||+||+++||+.|++++.. .....+.++
T Consensus 72 ~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~----------------------~~~~~~~~~ 129 (311)
T cd02658 72 NDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFK----------------------NLGLNPNDL 129 (311)
T ss_pred ccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhcc----------------------cccCCchhh
Confidence 246899999999999999999999999999999999999987541 112457899
Q ss_pred cceEEEEEEEeCCCCCeeceeeeeeeEEeecccc--------------hhHHHHHHhccccccccCCCccccccCCCcce
Q 006181 174 FGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 174 F~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~--------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (658)
|+|.+...++|..|+..+.+.++|..|+|+++.. .+|+++|+.|+.+|.++ ++|+.|+....
T Consensus 130 f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~ 205 (311)
T cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTT 205 (311)
T ss_pred eEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCccc
Confidence 9999999999999999999999999999998853 38999999999999997 68999999999
Q ss_pred eEEEEEEecCCceeEEEEeeeeecc---CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEE
Q 006181 240 ARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAY 316 (658)
Q Consensus 240 a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvay 316 (658)
+.++.+|.++|+||+|||+||.++. ..|+...|.||..| ....|+|+|||+|.|.+.++|||++|
T Consensus 206 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H~G~~~~~GHY~~~ 273 (311)
T cd02658 206 ATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISHKGTSVHSGHYVAH 273 (311)
T ss_pred EEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEccCCCCCCcceEEE
Confidence 9999999999999999999999832 25888899999776 24589999999999977999999999
Q ss_pred EEcC---CCceEEEeCceeeeechhhhcCCCeEEEEEE
Q 006181 317 IKDA---IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 317 vr~~---~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~ 351 (658)
+|.. .++||+|||+.|++++..++.+.+||||||+
T Consensus 274 vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 274 IKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9995 3899999999999999999999999999996
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-52 Score=442.13 Aligned_cols=283 Identities=26% Similarity=0.359 Sum_probs=244.6
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHHHH
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++........ ......+++++|..++..++... ..+.|..|+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~----------~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~ 69 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG----------ANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFL 69 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccc----------cccchhHHHHHHHHHHHHHHhCC-CcCCcHHHH
Confidence 8999999999999999999999999999886543210 11234468889999888887765 489999999
Q ss_pred HHHHhhhhccC------CCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEE
Q 006181 108 SCLRIFAEHFK------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (658)
Q Consensus 108 ~~L~~l~~~f~------~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~ 181 (658)
..|....+.|. .++||||+||+..||+.|++++... ....+.|.++|+|++.+.
T Consensus 70 ~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------------------~~~~~~i~~~F~g~~~~~ 129 (305)
T cd02657 70 QLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------------------GSKGSFIDQLFGIELETK 129 (305)
T ss_pred HHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc--------------------CCCCcHHHHhhceEEEEE
Confidence 99998888884 4599999999999999999986420 123578999999999999
Q ss_pred EEeCCCC-CeeceeeeeeeEEeecccc---hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEE
Q 006181 182 VKCLACG-AESNKVDEIMDISLDILNS---CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQL 257 (658)
Q Consensus 182 i~C~~C~-~~S~~~E~f~~LsL~i~~~---~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~L 257 (658)
++|..|+ ..+.+.|+|+.|+|+++.. .+|+++|+.++.++.. ..|+.|+....+.++.+|.++|++|+|||
T Consensus 130 ~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~L 204 (305)
T cd02657 130 MKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQF 204 (305)
T ss_pred EEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEE
Confidence 9999999 7899999999999999875 6899999999876653 46899998888999999999999999999
Q ss_pred eeeeecc----CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEEeCcee
Q 006181 258 KRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYV 332 (658)
Q Consensus 258 kRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~-~~Wy~fNDs~V 332 (658)
+||.++. ..|+++.|.||.+|||.+|+. ....|+|+|||+|.|.++++|||+||+|... +.||.|||+.|
T Consensus 205 kRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V 279 (305)
T cd02657 205 VRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279 (305)
T ss_pred ECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCce
Confidence 9999743 258899999999999999986 3469999999999997789999999999955 99999999999
Q ss_pred eeechhhhcC-------CCeEEEEEE
Q 006181 333 SVSTLQEVLS-------EKVYILFFI 351 (658)
Q Consensus 333 t~is~eev~s-------~~aYmLfY~ 351 (658)
++++.++|.. ..||||||+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 280 SEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999974 689999996
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.1e-50 Score=442.88 Aligned_cols=293 Identities=21% Similarity=0.325 Sum_probs=238.5
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCC--CCccCh
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD--LTLDAP 103 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~--~~~i~p 103 (658)
++||.|+||||||||+||+|+++|+||++++........ .....++.+++..++..+++.. ...++|
T Consensus 119 ~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-----------~~~~~~l~~~l~~l~~kl~~~~~~~~~isP 187 (440)
T cd02669 119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-----------KDRKSELVKRLSELIRKIWNPRNFKGHVSP 187 (440)
T ss_pred ccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-----------cCCCcHHHHHHHHHHHHHhccccCCCccCH
Confidence 499999999999999999999999999999976542111 0123357788888888888765 368999
Q ss_pred HHHHHHHHhhh-hccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 006181 104 AKIQSCLRIFA-EHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 104 ~~l~~~L~~l~-~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i 182 (658)
..|+.++.... +.|..++||||+|||.+||+.|++++.... ....++|+++|+|++.+.+
T Consensus 188 ~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-------------------~~~~~ii~~~F~G~l~~~~ 248 (440)
T cd02669 188 HELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-------------------KPNSSIIHDCFQGKVQIET 248 (440)
T ss_pred HHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-------------------CCCCCcceeccCceEEEEE
Confidence 99999997754 678899999999999999999999864221 1245899999999999999
Q ss_pred EeCCCC---------------CeeceeeeeeeEEeecccchhHHH-----HHHhccccccccCCCccccccCCCcceeEE
Q 006181 183 KCLACG---------------AESNKVDEIMDISLDILNSCSLKE-----AMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242 (658)
Q Consensus 183 ~C~~C~---------------~~S~~~E~f~~LsL~i~~~~sLed-----~L~~~~~~E~l~g~nky~C~~C~~~~~a~K 242 (658)
+|..|. ..+.+.++|++|+|+|+....+.+ +|..+...|.++ +|.|+.|.....+.|
T Consensus 249 ~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k 325 (440)
T cd02669 249 QKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLK 325 (440)
T ss_pred EeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceE
Confidence 987654 245678999999999987533322 222233334444 488999998889999
Q ss_pred EEEEecCCceeEEEEeeeeecc--CCccceeEeccce-eecccccccCC--CCCCCceEEEEEEEeecCCCCCCcEEEEE
Q 006181 243 QMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEV-LVLSSFMCKAS--QDPQPEYKLFGTIVHSGFSPDSGHYYAYI 317 (658)
Q Consensus 243 ~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~~-LdL~~~~~~~~--~~~~~~Y~L~aVI~H~G~s~~sGHYvayv 317 (658)
+.+|.++|+||+||||||.+.. ..|+.+.|.||.. |||.+|+.... ......|+|+|||+|.|...++|||+||+
T Consensus 326 ~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v 405 (440)
T cd02669 326 RYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQL 405 (440)
T ss_pred EEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEE
Confidence 9999999999999999999843 3699999999986 89999986432 23567999999999999544999999999
Q ss_pred Ec-CCCceEEEeCceeeeechhhhcCCCeEEEEEE
Q 006181 318 KD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 318 r~-~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~ 351 (658)
|+ ..++||+|||+.|+++++++|+..+||||||+
T Consensus 406 ~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 406 RHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 98 47899999999999999999999999999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-50 Score=430.58 Aligned_cols=323 Identities=29% Similarity=0.516 Sum_probs=273.6
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006181 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.|. +||.|+||||||||+||||.|++++|+|++.-.+.... +..+ +..-..........++.+++.....++.
T Consensus 263 ~Gt-cGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~i---Ne~N---plgmhg~vAsayadLik~ly~~~~haf~ 335 (823)
T COG5560 263 AGT-CGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESI---NEEN---PLGMHGSVASAYADLIKQLYDGNLHAFT 335 (823)
T ss_pred ccc-cceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhh---cccC---ccchhhhHHHHHHHHHHHHhCccccccC
Confidence 465 89999999999999999999999999999987665433 1111 2223334455566677777777889999
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCC-----------CCCcccCCCCccc
Q 006181 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG-----------GGETINGGSSVVK 171 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~siI~ 171 (658)
|..|...++.++..|.++.|||.+||+.+|||.||+.++++.+..+-......++. |+.+...+.++|.
T Consensus 336 Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiIt 415 (823)
T COG5560 336 PSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIIT 415 (823)
T ss_pred hHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999999999999988764443322111111 2233566889999
Q ss_pred cccceEEEEEEEeCCCCCeeceeeeeeeEEeecccc--------------------------------------------
Q 006181 172 EIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS-------------------------------------------- 207 (658)
Q Consensus 172 ~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~-------------------------------------------- 207 (658)
++|.|...++..|..|+.++.+++||++|+||+|-.
T Consensus 416 dLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~g 495 (823)
T COG5560 416 DLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKLG 495 (823)
T ss_pred HHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999720
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 496 c~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i~ 575 (823)
T COG5560 496 CFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASIY 575 (823)
T ss_pred ccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhhH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 576 ~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~~ 655 (823)
T COG5560 576 DKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYLS 655 (823)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchhh
Confidence
Q ss_pred -------------------hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee--ccCC
Q 006181 208 -------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGG 266 (658)
Q Consensus 208 -------------------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~--~~~~ 266 (658)
.||++||..|.++|.+...+.|+|+.|+....|.|++.|+++|.||+||||||+. .+..
T Consensus 656 lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrd 735 (823)
T COG5560 656 LFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRD 735 (823)
T ss_pred hhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchh
Confidence 1799999999999999988899999999999999999999999999999999997 4457
Q ss_pred ccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeechhhhcCCC
Q 006181 267 KIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLSEK 344 (658)
Q Consensus 267 Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~eev~s~~ 344 (658)
|+.+-|+|| ..|||+.+...- +++.-.|+|+||=.|+| ...+|||+||+|+ .+++||+|||++|+++.+++.+.+.
T Consensus 736 KiddlVeyPiddldLs~~~~~~-~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtss 813 (823)
T COG5560 736 KIDDLVEYPIDDLDLSGVEYMV-DDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSS 813 (823)
T ss_pred hhhhhhccccccccccceEEee-cCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccce
Confidence 999999999 679998775544 23447899999999999 6999999999999 5679999999999999999999999
Q ss_pred eEEEEEEEcC
Q 006181 345 VYILFFIRAN 354 (658)
Q Consensus 345 aYmLfY~R~~ 354 (658)
||+|||+|+.
T Consensus 814 aYvLFyrrk~ 823 (823)
T COG5560 814 AYVLFYRRKS 823 (823)
T ss_pred eEEEEEEecC
Confidence 9999999963
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-48 Score=388.52 Aligned_cols=331 Identities=25% Similarity=0.386 Sum_probs=250.5
Q ss_pred cccccccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccC-chHHHHHHHHHHH
Q 006181 15 LLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRE-CPFCILEKRIVRS 93 (658)
Q Consensus 15 ~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~~~~~l 93 (658)
.....+.+..+|+||.|.|||||||++||||+.+..+..++........ ++.+. +..... ..+..+..+...+
T Consensus 60 ~~~s~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~---INtd~---prg~~g~~~~k~F~~l~~~~ 133 (415)
T COG5533 60 MVVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQN---INTDF---PRGKPGSNAFKQFIALYETP 133 (415)
T ss_pred chhhhhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhh---ccCCC---CCCCcchhHHHHHHHHHhcc
Confidence 4456677789999999999999999999999999999886554332111 11111 112222 2333333344444
Q ss_pred hcCCCCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCC--------------CCCCC
Q 006181 94 LSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSS--------------GGGGG 159 (658)
Q Consensus 94 ~~~~~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~--------------~~~~~ 159 (658)
.......++|..|+..+..+++.|....|||+|||+.++||.||++++......+...-.. .--.|
T Consensus 134 ~~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EW 213 (415)
T COG5533 134 GCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEW 213 (415)
T ss_pred ccCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhh
Confidence 4445578999999999999999999999999999999999999999875543221111000 00012
Q ss_pred CCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeeccc--chhHHHHHHhccccccccCCCccccccCCCc
Q 006181 160 GETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKL 237 (658)
Q Consensus 160 ~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~ 237 (658)
.-...++.++|.+.|.|+..++++|..|+++|++..+|..|.++++. ...|++||++|.++|.++|.+.|+|++|+++
T Consensus 214 n~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k 293 (415)
T COG5533 214 NLHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRK 293 (415)
T ss_pred HHhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhccc
Confidence 22255667999999999999999999999999999999999999987 4569999999999999999999999999999
Q ss_pred ceeEEEEEEecCCceeEEEEeeeee--ccCCccceeE----eccceeecccccccCCCCCCCceEEEEEEEeecCCCCCC
Q 006181 238 VSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAI----AFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 311 (658)
Q Consensus 238 ~~a~K~~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V----~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sG 311 (658)
+.++|++.|..+|++|||+++||.. ....|++.+- .++-+......+.....-.+.+|.|+|||||.| +.++|
T Consensus 294 ~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gG 372 (415)
T COG5533 294 ESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGG 372 (415)
T ss_pred ccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc-eecCc
Confidence 9999999999999999999999984 1223443332 222222222222222233567999999999999 79999
Q ss_pred cEEEEEEcCCCceEEEeCceeeeechhhhc-CCCeEEEEEEEc
Q 006181 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVL-SEKVYILFFIRA 353 (658)
Q Consensus 312 HYvayvr~~~~~Wy~fNDs~Vt~is~eev~-s~~aYmLfY~R~ 353 (658)
||+++|+. ++.|+.|||+.|++++...-. ...+|+|||+|.
T Consensus 373 HY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 373 HYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999999 699999999999998754433 357899999995
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-47 Score=389.32 Aligned_cols=209 Identities=35% Similarity=0.635 Sum_probs=190.0
Q ss_pred ccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHHHH
Q 006181 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999886421
Q ss_pred HHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCC
Q 006181 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C 187 (658)
+||||+|||..||+.|+. .+.++|.|.+.+.++|..|
T Consensus 33 -------------~QqDa~EFl~~ll~~l~~------------------------------~i~~~F~g~~~~~i~C~~C 69 (240)
T cd02662 33 -------------EQQDAHELFQVLLETLEQ------------------------------LLKFPFDGLLASRIVCLQC 69 (240)
T ss_pred -------------hhcCHHHHHHHHHHHHHH------------------------------hccCccccEEEEEEEeCCC
Confidence 799999999999999993 3568899999999999999
Q ss_pred CCeec-eeeeeeeEEeecccc-----hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeee
Q 006181 188 GAESN-KVDEIMDISLDILNS-----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFE 261 (658)
Q Consensus 188 ~~~S~-~~E~f~~LsL~i~~~-----~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~ 261 (658)
+..+. +.|+|+.|+|+++.. .+|+++|+.|+.+|.+++ |.|++| +..|.++|++|+|||+||.
T Consensus 70 ~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~ 138 (240)
T cd02662 70 GESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSV 138 (240)
T ss_pred CCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEE
Confidence 99876 599999999999975 599999999999999987 999999 5679999999999999999
Q ss_pred ecc---CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC------------------
Q 006181 262 GIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA------------------ 320 (658)
Q Consensus 262 ~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~------------------ 320 (658)
++. ..|+++.|.||..| ....|+|+|||+|.|. .++|||+||+|.+
T Consensus 139 ~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~ 205 (240)
T cd02662 139 FDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGP 205 (240)
T ss_pred EcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEEEEEeCCCccccccccccccccccc
Confidence 854 25999999999988 3569999999999995 6999999999985
Q ss_pred ---CCceEEEeCceeeeechhhh-cCCCeEEEEEE
Q 006181 321 ---IGRWYCCNDSYVSVSTLQEV-LSEKVYILFFI 351 (658)
Q Consensus 321 ---~~~Wy~fNDs~Vt~is~eev-~s~~aYmLfY~ 351 (658)
.+.||+|||+.|+++++++| .+..||||||+
T Consensus 206 ~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 206 SSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 38999999999999999999 88999999995
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7e-45 Score=368.26 Aligned_cols=200 Identities=34% Similarity=0.630 Sum_probs=183.3
Q ss_pred CcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeE
Q 006181 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~L 200 (658)
+||||+||+++||+.|+. .+.++|+|.+...++|..|+..+.+.|+|+.|
T Consensus 21 ~QqDa~Ef~~~ll~~l~~------------------------------~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l 70 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS------------------------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYL 70 (230)
T ss_pred hhhhHHHHHHHHHHHHhh------------------------------hHHheeCCEEeCcEEcCCCcCCcceecceeEE
Confidence 799999999999999982 47789999999999999999999999999999
Q ss_pred Eeecccch------hHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc--CCccceeE
Q 006181 201 SLDILNSC------SLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAI 272 (658)
Q Consensus 201 sL~i~~~~------sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V 272 (658)
+|+++... +|+++|+.++.+|.+++.+++.|++|+....+.++..|.++|++|+|+|+||.++. ..|+++.|
T Consensus 71 ~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v 150 (230)
T cd02674 71 SLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPV 150 (230)
T ss_pred EEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceE
Confidence 99998644 99999999999999999999999999999999999999999999999999999853 57999999
Q ss_pred eccc-eeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEEeCceeeeechhhhcCCCeEEEEE
Q 006181 273 AFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFF 350 (658)
Q Consensus 273 ~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~is~eev~s~~aYmLfY 350 (658)
.||. .|++.+|+.........+|+|+|||+|.|. .++|||+||+|... ++||+|||+.|++++.+++....||||||
T Consensus 151 ~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y 229 (230)
T cd02674 151 TFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229 (230)
T ss_pred eccccccccccccCcccCCCCceEEEEEEEEeeCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEe
Confidence 9994 689998865555566789999999999995 49999999999954 89999999999999999998899999999
Q ss_pred E
Q 006181 351 I 351 (658)
Q Consensus 351 ~ 351 (658)
+
T Consensus 230 ~ 230 (230)
T cd02674 230 E 230 (230)
T ss_pred C
Confidence 6
No 17
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-46 Score=407.73 Aligned_cols=311 Identities=29% Similarity=0.472 Sum_probs=264.4
Q ss_pred cccCCCcccccccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHH
Q 006181 9 MSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK 88 (658)
Q Consensus 9 ~~W~~~~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 88 (658)
+-|+.-.+-..++.+|+ |||+|+|.||||||+||.|+.+..||+.+..++... ++.......+|++
T Consensus 177 VLWHsF~nYnSKkeTGY-VGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~-------------p~grdSValaLQr 242 (1089)
T COG5077 177 VLWHSFLNYNSKKETGY-VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH-------------PRGRDSVALALQR 242 (1089)
T ss_pred ceeecccccccccceee-eeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC-------------CCccchHHHHHHH
Confidence 45887777778888887 999999999999999999999999999998876421 1233345578999
Q ss_pred HHHHHhcCCCCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCC
Q 006181 89 RIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSS 168 (658)
Q Consensus 89 ~~~~l~~~~~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s 168 (658)
.|.+++... .++++.+|...+. +..+...+|||.|||.+.|+|.|+...... .-..
T Consensus 243 ~Fynlq~~~-~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt---------------------~VEn 298 (1089)
T COG5077 243 LFYNLQTGE-EPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGT---------------------VVEN 298 (1089)
T ss_pred HHHHHhccC-CCcchHHhhhhcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCC---------------------hhhh
Confidence 999988776 5677777665433 333444589999999999999999854321 1235
Q ss_pred ccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEec
Q 006181 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (658)
Q Consensus 169 iI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~ 248 (658)
-+..+|-|.+.+.+.|.+-.+++.+.|.||++.|++.+..+|++++++|.+.|+++|+|+|.|++-| .+.|.|..-+.+
T Consensus 299 aln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeS 377 (1089)
T COG5077 299 ALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFES 377 (1089)
T ss_pred HHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeecc
Confidence 6889999999999999999999999999999999999999999999999999999999999999865 588999999999
Q ss_pred CCceeEEEEeeeeeccC----CccceeEeccceeecccccccCC---CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-C
Q 006181 249 SPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-A 320 (658)
Q Consensus 249 lP~iLiI~LkRF~~~~~----~Ki~~~V~fP~~LdL~~~~~~~~---~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~ 320 (658)
+|+||.++||||.+++. .|++++++||.++||.+|++.+. ++..+.|.|+||++|.| +.+.|||||++|. .
T Consensus 378 lPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~ 456 (1089)
T COG5077 378 LPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEK 456 (1089)
T ss_pred CchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEecc-ccCCceEEEEecccc
Confidence 99999999999998553 69999999999999999998764 34568999999999999 6999999999997 5
Q ss_pred CCceEEEeCceeeeechhhhcC----------------------CCeEEEEEEEcCCCCCC
Q 006181 321 IGRWYCCNDSYVSVSTLQEVLS----------------------EKVYILFFIRANQRPVS 359 (658)
Q Consensus 321 ~~~Wy~fNDs~Vt~is~eev~s----------------------~~aYmLfY~R~~~~~~~ 359 (658)
+|+||+|||++|+.++..+|+. -.||||+|-|.+...-.
T Consensus 457 dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddL 517 (1089)
T COG5077 457 DGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDL 517 (1089)
T ss_pred CCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhh
Confidence 8999999999999999999883 26899999998764433
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=403.29 Aligned_cols=319 Identities=27% Similarity=0.498 Sum_probs=272.5
Q ss_pred cccCCCcccccccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHH
Q 006181 9 MSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK 88 (658)
Q Consensus 9 ~~W~~~~~~~~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 88 (658)
..|.--++..+|+..|. |||+|-|+|||||+++|-|+++|-+|..+..........+.. .....+|.++.
T Consensus 79 yE~~YlppVgsRpp~gf-VGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s---------~~e~vl~~lQ~ 148 (944)
T KOG1866|consen 79 YEWEYLPPVGSRPPEGF-VGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMS---------GDEKVLRHLQV 148 (944)
T ss_pred cCcccCCCcCCCCCcce-eeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhc---------chHHHHHHHHH
Confidence 45664444444555555 999999999999999999999999999887766542111111 11228999999
Q ss_pred HHHHHhcCCCCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCC
Q 006181 89 RIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSS 168 (658)
Q Consensus 89 ~~~~l~~~~~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s 168 (658)
+|..+..+..+++-|..|-+.++..+...+..+||||.|||..|+|.+++.+.... ...
T Consensus 149 iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg---------------------~p~ 207 (944)
T KOG1866|consen 149 IFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG---------------------HPQ 207 (944)
T ss_pred HHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC---------------------CcH
Confidence 99999999999999999999999888888889999999999999999999876443 235
Q ss_pred ccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEec
Q 006181 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (658)
Q Consensus 169 iI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~ 248 (658)
++...|+|....+-+|..|.+.-...|.|..|+|+|. ..+|+++|+.|++.|+++|.|.|+|++|+++....|++.|++
T Consensus 208 lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~ 286 (944)
T KOG1866|consen 208 LFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKK 286 (944)
T ss_pred HHHHHhcCccchhhhhccCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhh
Confidence 7889999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeeeeeccC----CccceeEeccceeecccccccCC----------------CCCCCceEEEEEEEeecCCC
Q 006181 249 SPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS----------------QDPQPEYKLFGTIVHSGFSP 308 (658)
Q Consensus 249 lP~iLiI~LkRF~~~~~----~Ki~~~V~fP~~LdL~~~~~~~~----------------~~~~~~Y~L~aVI~H~G~s~ 308 (658)
||++|+|||+||.|+.. .|-+..+.||.+|||.+|+..+. .....+|+|+|||+|+| .+
T Consensus 287 LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-qA 365 (944)
T KOG1866|consen 287 LPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-QA 365 (944)
T ss_pred CChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-cc
Confidence 99999999999999653 58899999999999999976432 12456899999999999 69
Q ss_pred CCCcEEEEEEcC----CCceEEEeCceeeeechhhhcC--------------------CCeEEEEEEEcCCCCCCC
Q 006181 309 DSGHYYAYIKDA----IGRWYCCNDSYVSVSTLQEVLS--------------------EKVYILFFIRANQRPVSA 360 (658)
Q Consensus 309 ~sGHYvayvr~~----~~~Wy~fNDs~Vt~is~eev~s--------------------~~aYmLfY~R~~~~~~~~ 360 (658)
.+||||+||++. .++||+|||..|++.+..++-. =+||||||+|.++.|...
T Consensus 366 saGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~ 441 (944)
T KOG1866|consen 366 SAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDD 441 (944)
T ss_pred cCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCccc
Confidence 999999999872 4799999999999997665431 179999999999887653
No 19
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.7e-42 Score=352.40 Aligned_cols=256 Identities=36% Similarity=0.606 Sum_probs=203.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcC--CCCccCh
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV--DLTLDAP 103 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~--~~~~i~p 103 (658)
|+||.|.||||||||+||+|+++|+||++|+........ ..........++++.+..++..++.. ....+.|
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~ 74 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKEN------NESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISP 74 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHH------HCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHC
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhh------ccccccccccchhhhhhhhhhhhhhhcccccceee
Confidence 699999999999999999999999999999976322111 00011223446899999999999987 5588999
Q ss_pred HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEE
Q 006181 104 AKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (658)
Q Consensus 104 ~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~ 183 (658)
..|..++....+.|..+.||||+|||..||+.|+.++........ .........+++.++|.+.+...+.
T Consensus 75 ~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 75 SDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKS----------WKNTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHH----------HHHHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccccccccccccchhhhhcccccccchhhcccccccc----------ccccccccccccccccccccccccc
Confidence 999999999988899999999999999999999998754221000 0001123457899999999999999
Q ss_pred eCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeec
Q 006181 184 CLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (658)
Q Consensus 184 C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~ 263 (658)
|..|+.. ...+.++|++|+|+|+||.+.
T Consensus 145 c~~c~~~----------------------------------------------------~~~~~~~P~~L~i~l~R~~~~ 172 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------QSSISSLPPILIIQLKRFEFD 172 (269)
T ss_dssp ETTTTCE----------------------------------------------------EEEEEEBBSEEEEEEE-EEEE
T ss_pred ccccccc----------------------------------------------------ccccccccceeeeccccceec
Confidence 9999987 456999999999999999763
Q ss_pred c----CCccceeEecc-ceeecccccccCCCC--CCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEEeCceeeee
Q 006181 264 F----GGKIDKAIAFE-EVLVLSSFMCKASQD--PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVS 335 (658)
Q Consensus 264 ~----~~Ki~~~V~fP-~~LdL~~~~~~~~~~--~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~i 335 (658)
. ..|+...|.|| ++|+|..++...... ....|+|+|||+|.| +.++|||+||+|+.. ++|++|||+.|+++
T Consensus 173 ~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~ 251 (269)
T PF00443_consen 173 QETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEV 251 (269)
T ss_dssp STSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred cccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEEC
Confidence 3 36999999999 799999998765422 467999999999999 899999999999854 46999999999999
Q ss_pred chhhhcC---CCeEEEEE
Q 006181 336 TLQEVLS---EKVYILFF 350 (658)
Q Consensus 336 s~eev~s---~~aYmLfY 350 (658)
++++|.. ..||||||
T Consensus 252 ~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 252 SWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp SHHHHCCGGSTCEEEEEE
T ss_pred CHHHHhhccCCceEEEeC
Confidence 9999988 89999999
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-43 Score=374.39 Aligned_cols=285 Identities=22% Similarity=0.347 Sum_probs=219.5
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchh-----h---hhccCCCchh-hhhccCchHHHHHHHHHHHhcC
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSL-----C---KQLTGDSALD-AERKRECPFCILEKRIVRSLSV 96 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~-----~---~~l~~~~~~~-~~~~~~~~~~~L~~~~~~l~~~ 96 (658)
|+||.|+||||||||+||+|+++|+||++++....... + ....+..... ......+++++|+.+|..|..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999998753211 0 0000010000 0011225789999999999988
Q ss_pred CCCccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccce
Q 006181 97 DLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 97 ~~~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
....+.|..++..+.. .||||+||+..||+.|+.++....... .+. .........++|.++|.|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~------~~~--~~~~~~~~~~~I~~lF~G 144 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAF------AGP--DTEDDKEQSDLIKRLFSG 144 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccc------cCc--ccccccchhhhhhHhcee
Confidence 8889999999877652 899999999999999999875322100 000 001112346899999999
Q ss_pred EEEEEEEeCCCC---CeeceeeeeeeEEeeccc----------chhHHHHHHhccccccccCCCccccccCCCcceeEEE
Q 006181 177 ALQSQVKCLACG---AESNKVDEIMDISLDILN----------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQ 243 (658)
Q Consensus 177 ~l~~~i~C~~C~---~~S~~~E~f~~LsL~i~~----------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~ 243 (658)
++.+.++|..|+ ..+.+.|+|++|+|+|.. ..+|.++|+.|+..|.
T Consensus 145 ~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~--------------------- 203 (343)
T cd02666 145 KTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS--------------------- 203 (343)
T ss_pred eEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh---------------------
Confidence 999999999997 678899999999999984 6899999999998775
Q ss_pred EEEecCCceeEEEEeeeee--ccCCccceeEeccceeecccccccCC---------------------------CCCCCc
Q 006181 244 MSILQSPNILVIQLKRFEG--IFGGKIDKAIAFEEVLVLSSFMCKAS---------------------------QDPQPE 294 (658)
Q Consensus 244 ~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V~fP~~LdL~~~~~~~~---------------------------~~~~~~ 294 (658)
|.++|++|.|||+ +.+ ....+..++++||...+..+++.... +-....
T Consensus 204 --~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 280 (343)
T cd02666 204 --LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYG 280 (343)
T ss_pred --hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 8899999999998 332 22246677778887666665543311 125778
Q ss_pred eEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEEeCceeeeechhhhcC------CCeEEEEEE
Q 006181 295 YKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS------EKVYILFFI 351 (658)
Q Consensus 295 Y~L~aVI~H~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~is~eev~s------~~aYmLfY~ 351 (658)
|+|+|||+|.| +.++|||++|+|+. .+.||+|||..|++++.++++. .+||||+|+
T Consensus 281 Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 281 YRLHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eEEEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99999999999 56999999999984 5899999999999999998875 589999995
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-43 Score=395.95 Aligned_cols=328 Identities=30% Similarity=0.453 Sum_probs=260.2
Q ss_pred cCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcC-CCC
Q 006181 21 KRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLT 99 (658)
Q Consensus 21 ~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~-~~~ 99 (658)
......+||.|+|||||||++||||+.++.||..++......... .+.......+.......+...+.. ...
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-------~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 368 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-------LDLFFGAEELESACAKLLQKLWHGHGQF 368 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-------cCCcccchhHHHHHHHhhhhhccCCCce
Confidence 344455999999999999999999999999997777665443321 001112223445555666666555 447
Q ss_pred ccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhh---hccCCCC-------CCCCC----CCCCcccC
Q 006181 100 LDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKK---LRRKGGG-------SSGGG----GGGETING 165 (658)
Q Consensus 100 ~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~---~~~~~~~-------~~~~~----~~~~~~~~ 165 (658)
.+.|..|+..+..+.+.|.++.|||++||+.++++.||++++.... ..+...+ .+... .+......
T Consensus 369 s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~ 448 (653)
T KOG1868|consen 369 SVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEE 448 (653)
T ss_pred ecCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccc
Confidence 8999999999999999999989999999999999999999987543 1111111 00000 01112333
Q ss_pred CCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeeccc------chhHHHHHHhccccccccCCCccccccCCCcce
Q 006181 166 GSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 166 ~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~ 239 (658)
..+.|.++|.|++.+.++|..|++.+.++++|++++|+|+. ..+|++|+..|+..|.+++++.|.|++|+....
T Consensus 449 ~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~ 528 (653)
T KOG1868|consen 449 EDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKES 528 (653)
T ss_pred cchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccc
Confidence 44559999999999999999999999999999999999985 256999999999999999999999999999999
Q ss_pred eE--EEEEEecCCceeEEEEeeeeec--cCCccceeEeccc-eeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEE
Q 006181 240 AR--KQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYY 314 (658)
Q Consensus 240 a~--K~~~I~~lP~iLiI~LkRF~~~--~~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYv 314 (658)
.. |+..|.++|++|+|||+||..+ ...|....|.||. ..++.++..... +....|+|+|||+|.| +.++|||+
T Consensus 529 ~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~-~~~~~Y~L~aVv~H~G-tl~sGHYt 606 (653)
T KOG1868|consen 529 SKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKG-NNPKSYRLYAVVNHSG-TLNSGHYT 606 (653)
T ss_pred ccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccC-CCccceeeEEEEeccC-cccCCceE
Confidence 86 9999999999999999999986 5578888899985 455665444333 3445699999999999 89999999
Q ss_pred EEEEc-CCCceEEEeCceeeeechhhhcCCCeEEEEEEEcCCCC
Q 006181 315 AYIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 357 (658)
Q Consensus 315 ayvr~-~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~~~~ 357 (658)
||++. ..+.|+.|||+.|+.++..++....||||||.|....+
T Consensus 607 a~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 607 AYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred EEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 99987 46899999999999999999988999999999987654
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=374.02 Aligned_cols=312 Identities=29% Similarity=0.427 Sum_probs=257.6
Q ss_pred ccccccccCCCcccccccC----CCC-CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhc
Q 006181 4 AHELQMSWQPSLLSEKRKR----GGP-PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERK 78 (658)
Q Consensus 4 ~~~~~~~W~~~~~~~~r~~----~g~-pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~ 78 (658)
+..+|-.|.+....+.+.. .|+ ++||.|+||+||||||+|+|+.+|.|...++.....-.+ .+..+
T Consensus 280 el~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~---------~~~~P 350 (763)
T KOG0944|consen 280 ELDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNC---------YPKDP 350 (763)
T ss_pred HHHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeec---------CCCCc
Confidence 3456667777655444332 233 399999999999999999999999999887765222112 13346
Q ss_pred cCchHHHHHHHHHHHhcCCC----------CccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhcc
Q 006181 79 RECPFCILEKRIVRSLSVDL----------TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRR 148 (658)
Q Consensus 79 ~~~~~~~L~~~~~~l~~~~~----------~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~ 148 (658)
..++.|++.+++..|.+... .-|.|..|...+.+-.+.|+..+||||+|||.+||+.|.+-..
T Consensus 351 ~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r------- 423 (763)
T KOG0944|consen 351 TNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR------- 423 (763)
T ss_pred chhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc-------
Confidence 67899999999999887543 3589999999999999999999999999999999999987421
Q ss_pred CCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeeccc------chhHHHHHHhcccccc
Q 006181 149 KGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEV 222 (658)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~ 222 (658)
+....+.++|.+.+..++.|..|..++++.+.-+.|.|+++. ...+.+||+.|+.+.+
T Consensus 424 ----------------s~~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~ 487 (763)
T KOG0944|consen 424 ----------------SSLPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQV 487 (763)
T ss_pred ----------------ccCCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcc
Confidence 112568899999999999999999999999998999999875 3589999999999944
Q ss_pred ccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee-cc-CCccceeEeccceeecccccccCC------------
Q 006181 223 LDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG-IF-GGKIDKAIAFEEVLVLSSFMCKAS------------ 288 (658)
Q Consensus 223 l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~-~~-~~Ki~~~V~fP~~LdL~~~~~~~~------------ 288 (658)
.+ |+|..|+.+..+.|..+|+++|++|+||+.||.+ ++ .+|+...+++|+.||++.|...+.
T Consensus 488 ~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~ 563 (763)
T KOG0944|consen 488 DD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAP 563 (763)
T ss_pred hh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCc
Confidence 44 9999999999999999999999999999999998 22 379999999999999999877651
Q ss_pred --------------------------------------------------------------------------------
Q 006181 289 -------------------------------------------------------------------------------- 288 (658)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (658)
T Consensus 564 ~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~ 643 (763)
T KOG0944|consen 564 ETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIV 643 (763)
T ss_pred ccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeee
Confidence
Q ss_pred ---------------------------------------------------------CCCCCceEEEEEEEeecCCCCCC
Q 006181 289 ---------------------------------------------------------QDPQPEYKLFGTIVHSGFSPDSG 311 (658)
Q Consensus 289 ---------------------------------------------------------~~~~~~Y~L~aVI~H~G~s~~sG 311 (658)
.+...+|.|+|+|+|.|.++.+|
T Consensus 644 smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sG 723 (763)
T KOG0944|consen 644 SMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSG 723 (763)
T ss_pred eecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCc
Confidence 00455899999999999999999
Q ss_pred cEEEEEEcCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcC
Q 006181 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 312 HYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~ 354 (658)
||+|++|. .|+|+.|||++|-. .++-.+..+||+||+|..
T Consensus 724 HYV~hirK-egkWVlfNDeKv~~--S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 724 HYVCHIRK-EGKWVLFNDEKVAA--SQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred ceEEEEee-cCcEEEEcchhhhh--ccCChhhcceEEEEEecC
Confidence 99999999 58899999999972 333446789999999963
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-41 Score=342.34 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=164.2
Q ss_pred CcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeE
Q 006181 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~L 200 (658)
.||||+||+..||+.|+..+....... .......++|.++|.|++..++.| |+..+.+.|+|++|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~-------------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L 85 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAI-------------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQY 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc-------------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEE
Confidence 599999999999999999875321100 001234578999999999987777 78889999999999
Q ss_pred EeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc--CCccceeEecccee
Q 006181 201 SLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEVL 278 (658)
Q Consensus 201 sL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~~L 278 (658)
+|+|.+..+|++||+.++.+|.+++++.++ | ..+.++..|.++|+||+|||+||.++. ..|+++.|.||..|
T Consensus 86 ~l~i~~~~~L~e~L~~~~~ee~l~~~~~~~---~---~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 86 PLQVNGYGNLHECLEAAMFEGEVELLPSDH---S---VKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII 159 (228)
T ss_pred EEEECCCCCHHHHHHHhhhhcccccccccc---h---hhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc
Confidence 999999999999999999998888743322 2 334566679999999999999999854 47999999999887
Q ss_pred ecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeechhhhcC--------CCeEEEE
Q 006181 279 VLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS--------EKVYILF 349 (658)
Q Consensus 279 dL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~eev~s--------~~aYmLf 349 (658)
....|+|+|||+|.|. +++|||++|+|+ ..+.||+|||+.|++++.++|.. ..|||||
T Consensus 160 ------------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLf 226 (228)
T cd02665 160 ------------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLM 226 (228)
T ss_pred ------------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEE
Confidence 2358999999999994 899999999997 47899999999999999999873 4799999
Q ss_pred EE
Q 006181 350 FI 351 (658)
Q Consensus 350 Y~ 351 (658)
|.
T Consensus 227 Yv 228 (228)
T cd02665 227 YI 228 (228)
T ss_pred EC
Confidence 94
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=341.64 Aligned_cols=215 Identities=23% Similarity=0.344 Sum_probs=170.8
Q ss_pred hhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeec
Q 006181 113 FAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESN 192 (658)
Q Consensus 113 l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~ 192 (658)
..+.|..++||||||||++||+.|++++.......... .. ........++|.|.+.+.++|..|++++.
T Consensus 24 ~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~---~~--------~~~~~~~~~~F~~~l~s~i~C~~C~~~s~ 92 (245)
T cd02673 24 INTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPS---NI--------EIKRLNPLEAFKYTIESSYVCIGCSFEEN 92 (245)
T ss_pred hhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCC---cc--------cccccCHhHheeeEEEeEEEecCCCCeee
Confidence 34568889999999999999999998775432111000 00 01112346889999999999999999999
Q ss_pred eeeeeeeEEeeccc--chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeeccCCccce
Q 006181 193 KVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDK 270 (658)
Q Consensus 193 ~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~~Ki~~ 270 (658)
+.++|++|+|+++. ...+++++..+...+.++ |.|++|+.. .+.+..+|.++|+||+|+|+||.+.. +...
T Consensus 93 ~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~ 165 (245)
T cd02673 93 VSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSD 165 (245)
T ss_pred eccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--cccc
Confidence 99999999999987 467888888888777765 899999975 78888899999999999999998643 2222
Q ss_pred eEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC--CCceEEEeCceeeeechhhhc---CCCe
Q 006181 271 AIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA--IGRWYCCNDSYVSVSTLQEVL---SEKV 345 (658)
Q Consensus 271 ~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~--~~~Wy~fNDs~Vt~is~eev~---s~~a 345 (658)
.+.+ ..+++.+|+. ....|+|+|||+|.|.+.++|||+||+|.. .++||.|||+.|+++++++|+ ++.|
T Consensus 166 ~~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~a 239 (245)
T cd02673 166 YLKK-NEEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSG 239 (245)
T ss_pred cccc-cccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCce
Confidence 2222 2345666654 356899999999999778999999999984 589999999999999999998 5799
Q ss_pred EEEEEE
Q 006181 346 YILFFI 351 (658)
Q Consensus 346 YmLfY~ 351 (658)
|||||+
T Consensus 240 YiLFY~ 245 (245)
T cd02673 240 YLIFYD 245 (245)
T ss_pred EEEEEC
Confidence 999995
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-39 Score=326.95 Aligned_cols=215 Identities=38% Similarity=0.662 Sum_probs=182.6
Q ss_pred CcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeE
Q 006181 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~L 200 (658)
.||||+|||..+++.|+.++...... ........+.+.++|.+.+...+.|..|+..+.....+..+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~-------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l 87 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR-------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFL 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeE
Confidence 79999999999999999987643221 00112335789999999999999999999887776677777
Q ss_pred Eeeccc----chhHHHHHHhccccccccCCCccccccCC--CcceeEEEEEEecCCceeEEEEeeeeecc---CCcccee
Q 006181 201 SLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCK--KLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKA 271 (658)
Q Consensus 201 sL~i~~----~~sLed~L~~~~~~E~l~g~nky~C~~C~--~~~~a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~ 271 (658)
.|+++. ..+|+++|+.++..|.+.+ +.|..|+ ....+.++..+.++|++|+|+++||.+.. ..|+...
T Consensus 88 ~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~ 164 (255)
T cd02257 88 SLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTK 164 (255)
T ss_pred EeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCe
Confidence 777765 4799999999999999987 7889998 68888899999999999999999998753 4799999
Q ss_pred Eeccceeeccccccc-----CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC-CceEEEeCceeeeechhhh-----
Q 006181 272 IAFEEVLVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEV----- 340 (658)
Q Consensus 272 V~fP~~LdL~~~~~~-----~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~is~eev----- 340 (658)
|.||.+|++..++.. ........|+|+|||+|.|.+.++|||+||+|... ++||+|||..|++++++++
T Consensus 165 v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~ 244 (255)
T cd02257 165 VSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244 (255)
T ss_pred EeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccC
Confidence 999999999988752 23345779999999999997669999999999965 9999999999999999998
Q ss_pred cCCCeEEEEEE
Q 006181 341 LSEKVYILFFI 351 (658)
Q Consensus 341 ~s~~aYmLfY~ 351 (658)
....||+|||+
T Consensus 245 ~~~~~yll~Y~ 255 (255)
T cd02257 245 LSSSAYILFYE 255 (255)
T ss_pred CCCceEEEEEC
Confidence 46899999995
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=359.88 Aligned_cols=309 Identities=33% Similarity=0.540 Sum_probs=265.3
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCC-CCccChH
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD-LTLDAPA 104 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~~~i~p~ 104 (658)
..||.|+|+||+||++||.|.+.+..+...+...+.... ......|+.|++.+++..+++.. ...+.|.
T Consensus 161 l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~----------~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~ 230 (492)
T KOG1867|consen 161 LRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP----------SSSGSSCLVCDLDRLFQALYSGHNRTPYSPF 230 (492)
T ss_pred ccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC----------CCCCCcchhhhhhhhhhHhhcCCCCCCcChH
Confidence 379999999999999999999999999887776664111 11136689999999999999998 7899999
Q ss_pred HHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEe
Q 006181 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKC 184 (658)
Q Consensus 105 ~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C 184 (658)
.+...+.+..+.+.+.+||||+||+..+++.++.+.....+.. ...+......++++.+|.|.+...++|
T Consensus 231 ~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~----------~~~~~~~~c~~iv~~~F~G~L~~~v~c 300 (492)
T KOG1867|consen 231 ELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL----------IASQSNKQCPCIVHTIFSGTLQSDVTC 300 (492)
T ss_pred HHHHHHHHhCcccccccccchHHHHHHhccccccccccccccc----------ccccCCcccccccceeecceeccceee
Confidence 9999999999999999999999999999999998751111100 001111145789999999999999999
Q ss_pred CCCCCeeceeeeeeeEEeecccc----------hhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeE
Q 006181 185 LACGAESNKVDEIMDISLDILNS----------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 185 ~~C~~~S~~~E~f~~LsL~i~~~----------~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLi 254 (658)
..|+..+...++|++|+|+++.. .++.+++..+...|......++.|..|+.++.+.++..|.++|.+|.
T Consensus 301 ~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~ 380 (492)
T KOG1867|consen 301 QTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLC 380 (492)
T ss_pred hhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceee
Confidence 99999999999999999999853 67999999999999888888899999999999999999999999999
Q ss_pred EEEeeeeec---cCCccceeEeccceeecccccccCC----CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEE
Q 006181 255 IQLKRFEGI---FGGKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCC 327 (658)
Q Consensus 255 I~LkRF~~~---~~~Ki~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~f 327 (658)
++++||++. ...|+++.|.||..|+|.+|+..+. +.....|+|.|||+|+|. .++|||+||.|. .+.||+|
T Consensus 381 ~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~ 458 (492)
T KOG1867|consen 381 LHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKC 458 (492)
T ss_pred eeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe-CCCcEEE
Confidence 999999982 1239999999999999999988521 235789999999999995 999999999999 8899999
Q ss_pred eCceeeeechhhhcCCCeEEEEEEEcCCC
Q 006181 328 NDSYVSVSTLQEVLSEKVYILFFIRANQR 356 (658)
Q Consensus 328 NDs~Vt~is~eev~s~~aYmLfY~R~~~~ 356 (658)
||+.|+.++.++|++..||+|||.+....
T Consensus 459 dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 459 DDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred cCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 99999999999999999999999987543
No 27
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-41 Score=362.59 Aligned_cols=265 Identities=31% Similarity=0.558 Sum_probs=228.2
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
+|||.|+.-|||+|+.+|+|+..|+|++.+..... ..+.+..
T Consensus 87 yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------------------~~~et~d 128 (1203)
T KOG4598|consen 87 YVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------------------DSLETKD 128 (1203)
T ss_pred eEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc--------------------------------------ccccchh
Confidence 59999999999999999999999999998873221 1111111
Q ss_pred HHHHHHhhhhccCC-----CCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEE
Q 006181 106 IQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQS 180 (658)
Q Consensus 106 l~~~L~~l~~~f~~-----g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~ 180 (658)
+...|+| ++|||++|+-+.++++|+.-.... ....+|.+++.|++..
T Consensus 129 -------lt~sfgw~s~ea~~qhdiqelcr~mfdalehk~k~t---------------------~~~~li~~ly~g~m~d 180 (1203)
T KOG4598|consen 129 -------LTQSFGWTSNEAYDQHDVQELCRLMFDALEHKWKGT---------------------EHEKLIQDLYRGTMED 180 (1203)
T ss_pred -------hHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhhcCc---------------------hHHHHHHHHhcchHHH
Confidence 2234444 489999999999999998754322 2347899999999999
Q ss_pred EEEeCCCCCeeceeeeeeeEEeeccc------chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeE
Q 006181 181 QVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 181 ~i~C~~C~~~S~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLi 254 (658)
.+.|..|+.++.+.+.|++|.|++.. ..+++++|..|..+|.++|.|+|-|++|++++.+.|.++|..+|-+|+
T Consensus 181 ~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt 260 (1203)
T KOG4598|consen 181 FVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLT 260 (1203)
T ss_pred HHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeE
Confidence 99999999999999999999999975 479999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeccC----CccceeEeccceeecccccccCCC-----------------------------------------
Q 006181 255 IQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKASQ----------------------------------------- 289 (658)
Q Consensus 255 I~LkRF~~~~~----~Ki~~~V~fP~~LdL~~~~~~~~~----------------------------------------- 289 (658)
|||+||.+++. .|+++++.||+.|||..|+.....
T Consensus 261 ~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~ 340 (1203)
T KOG4598|consen 261 IQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNR 340 (1203)
T ss_pred EeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCccc
Confidence 99999998664 599999999999999999765320
Q ss_pred ------------------------CCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeechhhhc---
Q 006181 290 ------------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVL--- 341 (658)
Q Consensus 290 ------------------------~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~eev~--- 341 (658)
.+++.|+|++|.+|.| ++.+|||+|||++ ..++||.|||.+|+-++.+++.
T Consensus 341 ~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sf 419 (1203)
T KOG4598|consen 341 YQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSF 419 (1203)
T ss_pred ccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhh
Confidence 1567899999999999 7999999999999 6789999999999999988886
Q ss_pred ----------CCCeEEEEEEEcCCCC
Q 006181 342 ----------SEKVYILFFIRANQRP 357 (658)
Q Consensus 342 ----------s~~aYmLfY~R~~~~~ 357 (658)
+.+||||+|+|.+..-
T Consensus 420 gg~~~~~~~s~tnaymlmyr~id~kr 445 (1203)
T KOG4598|consen 420 GGHPSGWNQSNTNAYMLMYRRIDPKR 445 (1203)
T ss_pred CCCCCCccccCcchhhhhhhhcCccc
Confidence 2589999999988643
No 28
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=325.32 Aligned_cols=314 Identities=26% Similarity=0.428 Sum_probs=255.5
Q ss_pred ccccccccCCCccc---ccccC--CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhc
Q 006181 4 AHELQMSWQPSLLS---EKRKR--GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERK 78 (658)
Q Consensus 4 ~~~~~~~W~~~~~~---~~r~~--~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~ 78 (658)
+.+.|..|+.-.-. ...+. -++++||.|+||+||+||++|.|+....+...+....+...+ ....+
T Consensus 276 q~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~---------~~~~P 346 (749)
T COG5207 276 QSEQNANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEIC---------YMKNP 346 (749)
T ss_pred HHhhhcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceee---------eecCC
Confidence 45667888865221 11122 344699999999999999999999998888766555443322 12236
Q ss_pred cCchHHHHHHHHHHHhcCCC----CccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCC
Q 006181 79 RECPFCILEKRIVRSLSVDL----TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSS 154 (658)
Q Consensus 79 ~~~~~~~L~~~~~~l~~~~~----~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~ 154 (658)
..|++|++.+++..+..... ..+.|..|..+++.-.+.|+..+||||+|||.+||+.|..-...
T Consensus 347 ~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S------------ 414 (749)
T COG5207 347 LECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS------------ 414 (749)
T ss_pred chhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch------------
Confidence 77899999999998887652 56899999999999999999999999999999999999863221
Q ss_pred CCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeeccc---chhHHHHHHhccccccccCCCcccc
Q 006181 155 GGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYKC 231 (658)
Q Consensus 155 ~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~l~g~nky~C 231 (658)
...+.|.++|...+..++.|..|+.+++..++...+.+.+.+ ..++.++++.||.+++++ |.|
T Consensus 415 ----------~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~C 480 (749)
T COG5207 415 ----------YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSC 480 (749)
T ss_pred ----------hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eeh
Confidence 223678899999999999999999999999999999998876 578999999999999999 999
Q ss_pred ccCCCcceeEEEEEEecCCceeEEEEeeeee-cc-CCccceeEecc--ceeecccccccCCC------------------
Q 006181 232 DNCKKLVSARKQMSILQSPNILVIQLKRFEG-IF-GGKIDKAIAFE--EVLVLSSFMCKASQ------------------ 289 (658)
Q Consensus 232 ~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~-~~-~~Ki~~~V~fP--~~LdL~~~~~~~~~------------------ 289 (658)
+.|+.+..|.+...|+++|++||++..||.. .+ ..|+..++.+. ..++++.||+....
T Consensus 481 enCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs 560 (749)
T COG5207 481 ENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQS 560 (749)
T ss_pred hhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHH
Confidence 9999999999999999999999999999986 22 24666665554 35777777765110
Q ss_pred --------------------------------------------------------------------------------
Q 006181 290 -------------------------------------------------------------------------------- 289 (658)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (658)
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rk 640 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRK 640 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHH
Confidence
Q ss_pred --------------------C----------------------CCCceEEEEEEEeecCCCCCCcEEEEEEcC---CCce
Q 006181 290 --------------------D----------------------PQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGRW 324 (658)
Q Consensus 290 --------------------~----------------------~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~---~~~W 324 (658)
+ ...-|.|.|||||.|.++.+|||++|||.. .-+|
T Consensus 641 al~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kW 720 (749)
T COG5207 641 ALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKW 720 (749)
T ss_pred HHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeE
Confidence 0 122499999999999999999999999982 3489
Q ss_pred EEEeCceeeeechhhhcCCCeEEEEEEE
Q 006181 325 YCCNDSYVSVSTLQEVLSEKVYILFFIR 352 (658)
Q Consensus 325 y~fNDs~Vt~is~eev~s~~aYmLfY~R 352 (658)
+.|||+.+-.++.-+++..+.|++||.|
T Consensus 721 vl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 721 VLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred EEEccchheehhhHHHHhhCCeEEEEec
Confidence 9999999999988888999999999998
No 29
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=371.84 Aligned_cols=303 Identities=27% Similarity=0.470 Sum_probs=261.1
Q ss_pred cccCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC
Q 006181 19 KRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL 98 (658)
Q Consensus 19 ~r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~ 98 (658)
.++.+|+||||.|+||||||||+||+|+.++.||+.+......... ..+......+|+++|..++.+..
T Consensus 163 ~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~-----------~~~~~~v~~~lq~lF~~LQ~s~~ 231 (1093)
T KOG1863|consen 163 SKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH-----------EDPRRSIPLALQRLFYELQMSKR 231 (1093)
T ss_pred hhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc-----------ccccchHHHHHHHHHHHHhhcCC
Confidence 4556899999999999999999999999999999999988741111 11222367789999999999988
Q ss_pred CccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEE
Q 006181 99 TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGAL 178 (658)
Q Consensus 99 ~~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l 178 (658)
..+.+..+...+.... ....+|||++||++.|++.|+..+.... ....+.++|.|.+
T Consensus 232 k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------------------~~~~l~~lf~g~~ 288 (1093)
T KOG1863|consen 232 KYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------------------VENTLQDLFTGKM 288 (1093)
T ss_pred CCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh---------------------hhhhhhhhhcCCc
Confidence 8999999999887554 4557999999999999999998764332 1357899999999
Q ss_pred EEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEe
Q 006181 179 QSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLK 258 (658)
Q Consensus 179 ~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~Lk 258 (658)
.+.+.|..|+..+.+.|.|+++.+++.+..++.++|..|+..|.++|+|+ .|..|...+.+.+...+..+|++|.|+|+
T Consensus 289 ~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~ 367 (1093)
T KOG1863|consen 289 KSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLM 367 (1093)
T ss_pred ceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred eeeecc----CCccceeEeccceeeccccccc--CCCCCC-CceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCc
Q 006181 259 RFEGIF----GGKIDKAIAFEEVLVLSSFMCK--ASQDPQ-PEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDS 330 (658)
Q Consensus 259 RF~~~~----~~Ki~~~V~fP~~LdL~~~~~~--~~~~~~-~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs 330 (658)
||.++. ..|+++.+.||..|+|.+|+.. ...... +.|.|+||++|.| ..++|||++|++. ..++|++|||.
T Consensus 368 Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~ 446 (1093)
T KOG1863|consen 368 RFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDL 446 (1093)
T ss_pred heeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCc
Confidence 999943 3699999999999999999873 222233 5999999999977 7999999999997 47999999999
Q ss_pred eeeeechhhhcC----------------CCeEEEEEEEcCCCC
Q 006181 331 YVSVSTLQEVLS----------------EKVYILFFIRANQRP 357 (658)
Q Consensus 331 ~Vt~is~eev~s----------------~~aYmLfY~R~~~~~ 357 (658)
.|+.++..+++. ..||||+|.|.+...
T Consensus 447 ~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~ 489 (1093)
T KOG1863|consen 447 VVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCES 489 (1093)
T ss_pred eeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHH
Confidence 999998877663 128999999987543
No 30
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-36 Score=312.75 Aligned_cols=233 Identities=25% Similarity=0.414 Sum_probs=189.9
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccCh
Q 006181 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAP 103 (658)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p 103 (658)
..++||.|.|.|||+||+||+|+++|+||+++..... ......|++|+|..+|
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~el~~lf------------- 65 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILV--------------ACPKESCLLCELGYLF------------- 65 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcc--------------cCCcCccHHHHHHHHH-------------
Confidence 3469999999999999999999999999998322211 1235679999999988
Q ss_pred HHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEE
Q 006181 104 AKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (658)
Q Consensus 104 ~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~ 183 (658)
.. =.+-|.++|++.+..+... .+
T Consensus 66 s~------------------~iq~F~~fll~~i~~~~~~------------------------------~~--------- 88 (268)
T cd02672 66 ST------------------LIQNFTRFLLETISQDQLG------------------------------TP--------- 88 (268)
T ss_pred HH------------------HHHHHHHHHHHHHHHHhcc------------------------------cC---------
Confidence 11 1144788888888854210 00
Q ss_pred eCCCCCeeceeeeeeeEEeeccc-----chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCc----eeE
Q 006181 184 CLACGAESNKVDEIMDISLDILN-----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN----ILV 254 (658)
Q Consensus 184 C~~C~~~S~~~E~f~~LsL~i~~-----~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~----iLi 254 (658)
..|+..+.+.++|+.|+|++|. ..+|.++|+.++..|... ++.|++|++.+.+.++.+|.++|+ ||+
T Consensus 89 -~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~ 164 (268)
T cd02672 89 -FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLV 164 (268)
T ss_pred -CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEE
Confidence 5699999999999999999985 469999999999998654 599999999999999999999999 999
Q ss_pred EEEeeeeecc---------CCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-----
Q 006181 255 IQLKRFEGIF---------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA----- 320 (658)
Q Consensus 255 I~LkRF~~~~---------~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~----- 320 (658)
|||+||.+.. ..|+...|.||..+++..+...+ .....+|+|+|||+|.|.+.++|||+||+|..
T Consensus 165 i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~-~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~ 243 (268)
T cd02672 165 INLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG-QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEEST 243 (268)
T ss_pred EEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC-CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCC
Confidence 9999998522 24667789999887776554433 24567899999999999666999999999984
Q ss_pred CCceEEEeCceeeeechhhhcCCCeEEEEEE
Q 006181 321 IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 321 ~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~ 351 (658)
.++||+|||..|++|+. .||||||+
T Consensus 244 ~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 244 HGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CCcEEEecCeEEEEcCc------hheeeecC
Confidence 57899999999999987 99999995
No 31
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=331.35 Aligned_cols=325 Identities=31% Similarity=0.488 Sum_probs=244.0
Q ss_pred CcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhc------cCCCchhhhhccCchHHHHHHHHHHHhcCCCC
Q 006181 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQL------TGDSALDAERKRECPFCILEKRIVRSLSVDLT 99 (658)
Q Consensus 26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ 99 (658)
-+||.|+|||||+|||+|.|..+|.+|+.|.........-.+ ..............++.+|.. +..|......
T Consensus 205 VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ks 283 (877)
T KOG1873|consen 205 VRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKS 283 (877)
T ss_pred ccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCC
Confidence 379999999999999999999999999999887654211000 000000011112223444444 5555666668
Q ss_pred ccChHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhc---cCCCCCCCC--CC-------CCCcccCCC
Q 006181 100 LDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLR---RKGGGSSGG--GG-------GGETINGGS 167 (658)
Q Consensus 100 ~i~p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~---~~~~~~~~~--~~-------~~~~~~~~~ 167 (658)
++.|..|...+....++|.+++||||||+|+.||+.|..|-....+.. ..+.+.... +. ..+...+..
T Consensus 284 v~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~ 363 (877)
T KOG1873|consen 284 VITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLS 363 (877)
T ss_pred ccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCC
Confidence 999999999999999999999999999999999999977644333211 011111000 00 011123344
Q ss_pred CccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccc----------------------------------------
Q 006181 168 SVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS---------------------------------------- 207 (658)
Q Consensus 168 siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~---------------------------------------- 207 (658)
-++...|.|.+.+++.|..|. ++...+.|.+.+++|-..
T Consensus 364 ~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~ 442 (877)
T KOG1873|consen 364 LPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLD 442 (877)
T ss_pred cccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCcccccccc
Confidence 556689999999999999999 666777888777776200
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 443 ~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~ 522 (877)
T KOG1873|consen 443 SLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANMD 522 (877)
T ss_pred cccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 523 ~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~ 602 (877)
T KOG1873|consen 523 EFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKT 602 (877)
T ss_pred ccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeecccccc
Confidence
Q ss_pred ---------------------------------------------------------------------------hhHHH
Q 006181 208 ---------------------------------------------------------------------------CSLKE 212 (658)
Q Consensus 208 ---------------------------------------------------------------------------~sLed 212 (658)
++++.
T Consensus 603 ~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~ 682 (877)
T KOG1873|consen 603 VGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQR 682 (877)
T ss_pred ccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHHH
Confidence 16999
Q ss_pred HHHhccccccccCCCccccccCCCc---------------------------ceeEEEEEEecCCceeEEEEeeeeeccC
Q 006181 213 AMQKFFQPEVLDGNNKYKCDNCKKL---------------------------VSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 213 ~L~~~~~~E~l~g~nky~C~~C~~~---------------------------~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
||.+|++.|.+.|+|+|.|+.|.+. ..+.+++.|..+|+||+|||+||.....
T Consensus 683 CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~~ 762 (877)
T KOG1873|consen 683 CLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDIR 762 (877)
T ss_pred HHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhhh
Confidence 9999999999999999999999661 1135677888999999999999986332
Q ss_pred ---CccceeEeccceeecccccccCC----CCCCCceEEEEEEEeecCCCCCCcEEEEEEc-------------------
Q 006181 266 ---GKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD------------------- 319 (658)
Q Consensus 266 ---~Ki~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~------------------- 319 (658)
.|.+..+.|++.+||.+|+.-.. ......|+|+|||.|.| ++..|||++|+|.
T Consensus 763 ~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~ 841 (877)
T KOG1873|consen 763 GRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKDFESDA 841 (877)
T ss_pred chhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCccccccchhcc
Confidence 58899999999999999876432 12455899999999999 7999999999983
Q ss_pred --CCCceEEEeCceeeeechhhhcCCCeEEEEEEEc
Q 006181 320 --AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (658)
Q Consensus 320 --~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~ 353 (658)
+.++||+..|+.|.++++++|+..+||||||+|.
T Consensus 842 ~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 842 GIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred CCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999995
No 32
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=4.5e-33 Score=293.67 Aligned_cols=280 Identities=24% Similarity=0.361 Sum_probs=238.2
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHh-cCCCCccChHH
Q 006181 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLDAPAK 105 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~-~~~~~~i~p~~ 105 (658)
+||.|.+++||+||+||+|+++|++|+.++.+. .| ....|++|+|..+|.++. .+.+..+.+..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c------------~~e~cL~cELgfLf~ml~~~~~g~~cq~sN 65 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---EC------------PKEFCLLCELGFLFDMLDSKAKGINCQASN 65 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CC------------CccccHHHHHHHHHHHhhhhcCCCcChHHH
Confidence 599999999999999999999999999998765 12 266799999999999999 88889999999
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeC
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~ 185 (658)
|.++|+........+.|+|+++|+++|++.|+.++.......... ...........|.++|+......++|.
T Consensus 66 flr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~f~~~~~~~~~c~ 137 (295)
T PF13423_consen 66 FLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT--------SENSSSSPESSISQLFGTSFETTIRCT 137 (295)
T ss_pred HHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccc--------cccccCCCcchHHHHhCcceeeeeccc
Confidence 999999887666677899999999999999999877554310000 000112345789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccc---chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeee
Q 006181 186 ACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
.|+..+.+.+....+.+..|. ..++.++|+.++..|.... ..|++|++......+..|.++|+||.|.++|+..
T Consensus 138 ~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~ 214 (295)
T PF13423_consen 138 SCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSE 214 (295)
T ss_pred ccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCc
Confidence 999999998888888888876 5799999999999999886 8999999999999999999999999999999876
Q ss_pred c--cCCccceeEeccceeecccccccCC------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcC---CCceEEEeCce
Q 006181 263 I--FGGKIDKAIAFEEVLVLSSFMCKAS------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGRWYCCNDSY 331 (658)
Q Consensus 263 ~--~~~Ki~~~V~fP~~LdL~~~~~~~~------~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~---~~~Wy~fNDs~ 331 (658)
. ...+....+.+|..+++..++..+. .....+|+|.|+|||.|.+..+|||++|||.. +++||+|||..
T Consensus 215 ~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDfl 294 (295)
T PF13423_consen 215 EEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFL 294 (295)
T ss_pred ccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEe
Confidence 3 2357778899999999998876543 34667999999999999889999999999984 47999999976
Q ss_pred e
Q 006181 332 V 332 (658)
Q Consensus 332 V 332 (658)
|
T Consensus 295 V 295 (295)
T PF13423_consen 295 V 295 (295)
T ss_pred C
Confidence 5
No 33
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-34 Score=339.13 Aligned_cols=321 Identities=31% Similarity=0.498 Sum_probs=264.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006181 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
.|. +||.|+|||||||+.+|+|.+.++++++++.......+ +..... ......--.+..++..++......+.
T Consensus 244 ~g~-~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ei---n~~n~~---~~~~~~~~~~~~l~~~~~s~~~~~v~ 316 (842)
T KOG1870|consen 244 RGE-TGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREI---NESNPL---GSAGEVASSFADLIKQLWSGNKSAVA 316 (842)
T ss_pred ccc-cccccCCccccchhhhhhhccCcchhHHHHhHhhHhhh---cccCCC---cccceechhhhhHHHHhccCCccccC
Confidence 344 89999999999999999999999999999876554311 111111 11112222334455556665555899
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCC-CC-------CCCCCcccCCCCcccccc
Q 006181 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSS-GG-------GGGGETINGGSSVVKEIF 174 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~siI~~lF 174 (658)
|..+...+..+.+.|.++.|||.+||+-++++-+|+.+.......+...... +. +.+........++|.++|
T Consensus 317 ~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~ 396 (842)
T KOG1870|consen 317 PTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLF 396 (842)
T ss_pred chhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeee
Confidence 9999999999999999999999999999999999999887766422111111 10 112233666778999999
Q ss_pred ceEEEEEEEeCCCCCeeceeeeeeeEEeecccc-----------------------------------------------
Q 006181 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNS----------------------------------------------- 207 (658)
Q Consensus 175 ~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~----------------------------------------------- 207 (658)
.|...+...|..|+..+.++++|.+|+++++..
T Consensus 397 ~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 476 (842)
T KOG1870|consen 397 DGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSW 476 (842)
T ss_pred cceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999998720
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 477 ~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 477 ELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred hcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006181 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 557 ~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (842)
T KOG1870|consen 557 VLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALR 636 (842)
T ss_pred ccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccc
Confidence
Q ss_pred -----------------------------------------------------------hhHHHHHHhccccccccCCCc
Q 006181 208 -----------------------------------------------------------CSLKEAMQKFFQPEVLDGNNK 228 (658)
Q Consensus 208 -----------------------------------------------------------~sLed~L~~~~~~E~l~g~nk 228 (658)
.+|++||+.|+.+|.|..+++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~ 716 (842)
T KOG1870|consen 637 FFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDR 716 (842)
T ss_pred ccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCcccc
Confidence 069999999999999999999
Q ss_pred cccccCCCcceeEEEEEEecCCceeEEEEeeeee--ccCCccceeEecc-ceeecccccccCCCCCCCceEEEEEEEeec
Q 006181 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSG 305 (658)
Q Consensus 229 y~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G 305 (658)
|.|++|+++..|.|++.++++|+||+||||||.+ ....|+.+.|+|| ..||+++|+..... ..|+|+||++|+|
T Consensus 717 w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~---~~Y~l~av~nHyG 793 (842)
T KOG1870|consen 717 WYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ---VLYDLYAVGNHYG 793 (842)
T ss_pred ccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc---ceeeeeeeecccC
Confidence 9999999999999999999999999999999998 3347999999999 57999999886552 8999999999999
Q ss_pred CCCCCCcEEEEEEc-CCCceEEEeCceeeeechhhhcCCCeEEEEEEEcC
Q 006181 306 FSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 306 ~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~ 354 (658)
...+|||+||.|. .+++||.|||+.|.+++.+++.++.||+|||+|++
T Consensus 794 -~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 794 -QLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred -CcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 5999999999999 68999999999999999999999999999999974
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.9e-31 Score=271.65 Aligned_cols=176 Identities=22% Similarity=0.378 Sum_probs=135.7
Q ss_pred CcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEEeCCCCCeeceeeeeeeE
Q 006181 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~L 200 (658)
+|||+.||+.+|++.++..+. ++.-++|.|-...+-. . +.-.|.++.|
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~--------------------------~~~~~~~~~g~~~~~~---~---~~~~e~~l~l 69 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLL--------------------------EPKVDIIHGGKKDQDD---D---KLVNERLLQI 69 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhh--------------------------hHHHHHHhcCcccccc---c---cccccceEEe
Confidence 689999999999999886443 2233444442211100 0 2234566666
Q ss_pred Eeecc---cchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeecc--CCccceeEecc
Q 006181 201 SLDIL---NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE 275 (658)
Q Consensus 201 sL~i~---~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP 275 (658)
.++.. +..+|++||+.|+..|. |.++|++|+|||+||.+.. ..|+++.|.||
T Consensus 70 ~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP 126 (241)
T cd02670 70 PVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP 126 (241)
T ss_pred ecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC
Confidence 66654 35799999999998875 8899999999999999844 46999999999
Q ss_pred ceeecccccccCC---------------------CCCCCceEEEEEEEeecCCCCCCcEEEEEEcCC------------C
Q 006181 276 EVLVLSSFMCKAS---------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI------------G 322 (658)
Q Consensus 276 ~~LdL~~~~~~~~---------------------~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~------------~ 322 (658)
..|||.+|+.... .....+|+|+|||+|.|.+.++|||+||+|... +
T Consensus 127 ~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~ 206 (241)
T cd02670 127 DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNA 206 (241)
T ss_pred CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCC
Confidence 9999999986542 124568999999999998799999999999853 7
Q ss_pred ceEEEeCceeeeechh------hhcCCCeEEEEEE
Q 006181 323 RWYCCNDSYVSVSTLQ------EVLSEKVYILFFI 351 (658)
Q Consensus 323 ~Wy~fNDs~Vt~is~e------ev~s~~aYmLfY~ 351 (658)
.||+|||..|+.+... .+..+.||||||+
T Consensus 207 ~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 207 QWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred eEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 9999999988876432 4567899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=300.97 Aligned_cols=317 Identities=26% Similarity=0.403 Sum_probs=244.4
Q ss_pred cccccCCCcchHH--HHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcC--CCCccC
Q 006181 27 LGLRNLGNSCYLN--SVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV--DLTLDA 102 (658)
Q Consensus 27 vGL~N~GNTCYlN--SvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~--~~~~i~ 102 (658)
-|..|.+++|+.| ++.|.++.+-++++.......... .... .....+..+...+...... ....+.
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~i~ 302 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLK------RSYI----IKEELLTCLLDLFSSISSRKKLVGRIS 302 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhccc------chhh----hhHHHHHHhhhhccchhhhcccccccC
Confidence 6889999999999 999999999998865443321100 0000 0011111222222211111 125689
Q ss_pred hHHHHHHHHhhhhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCC---CCCCCCC--------CcccCCCCccc
Q 006181 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGS---SGGGGGG--------ETINGGSSVVK 171 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~siI~ 171 (658)
|..++..+.+....|..+.||||+||+.++++.+++.+............. .+..... ........+++
T Consensus 303 p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~ 382 (587)
T KOG1864|consen 303 PTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVS 382 (587)
T ss_pred cchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHH
Confidence 999999999999999999999999999999999998765443211111010 1111100 11233567899
Q ss_pred cccceEEEEEEEeCCCCCeeceeeeeeeEEeecc--cchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecC
Q 006181 172 EIFGGALQSQVKCLACGAESNKVDEIMDISLDIL--NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 172 ~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~--~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~l 249 (658)
.+|.|++..++.|..|+..+.+.+.|.+++++++ ...++..+|..|..+|.+.|+++|.|++|...+.|.+.+.++++
T Consensus 383 ~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~l 462 (587)
T KOG1864|consen 383 KLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKL 462 (587)
T ss_pred HhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCC
Confidence 9999999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeeeeec----cCCccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceE
Q 006181 250 PNILVIQLKRFEGI----FGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY 325 (658)
Q Consensus 250 P~iLiI~LkRF~~~----~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy 325 (658)
|.+|+|+|+||.+. ...|+...+.+|.++.+.....++. .+..+|.|+|||||.|.+.+.|||+||+|...-.|+
T Consensus 463 p~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~-~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl 541 (587)
T KOG1864|consen 463 PYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDN-NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWL 541 (587)
T ss_pred cceeeeehhccccccccccccccccccccccceeecccccccc-CccceeeEEEEEEeccCCCCCcceEEEEeeCCCCce
Confidence 99999999999984 2358888899999998887665543 125799999999999999999999999999555599
Q ss_pred EEeCceeeeechhhhcC---CCeEEEEEEEcC
Q 006181 326 CCNDSYVSVSTLQEVLS---EKVYILFFIRAN 354 (658)
Q Consensus 326 ~fNDs~Vt~is~eev~s---~~aYmLfY~R~~ 354 (658)
+|||..|+.++.++|.. ..+|+++|...-
T Consensus 542 ~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 542 LFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ecccccccccCcchhhhccCCCccceeeeEEe
Confidence 99999999999888874 567777776643
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-28 Score=251.85 Aligned_cols=315 Identities=24% Similarity=0.335 Sum_probs=222.7
Q ss_pred CCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcC-------
Q 006181 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV------- 96 (658)
Q Consensus 24 g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~------- 96 (658)
.-|+|+.|-||.|||||+||+|+.|+||.+.+......... . ....|.+......+..-++.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~------~-----~~~stp~lda~~~~~~df~n~~~~k~~ 94 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGT------V-----KEGSTPLLDASRPASSDFNNDSDAKLP 94 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCc------e-----ecccchhHHHHHHHHhhccccchhhhh
Confidence 44699999999999999999999999999987665422111 0 01111111111111111110
Q ss_pred ----------------------CCCccChHHHHHHHHhh--hhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCC
Q 006181 97 ----------------------DLTLDAPAKIQSCLRIF--AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGG 152 (658)
Q Consensus 97 ----------------------~~~~i~p~~l~~~L~~l--~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~ 152 (658)
...++-|..+...+... .+...+|.|+||.||+..++|.||+++....+.......
T Consensus 95 r~N~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~ 174 (420)
T KOG1871|consen 95 RKNSLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPND 174 (420)
T ss_pred hhccCCccccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcc
Confidence 00122222222222111 234567999999999999999999998876642111110
Q ss_pred C-------------CCCCC-------CCC--------------cccCCCCccccccceEEEEEEEeCCCCCeeceeeeee
Q 006181 153 S-------------SGGGG-------GGE--------------TINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIM 198 (658)
Q Consensus 153 ~-------------~~~~~-------~~~--------------~~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~ 198 (658)
. +.+.. ... ...-..++|.++|+|++++...-. -.+++...+||.
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCccc
Confidence 0 00000 000 022345789999999999876654 355668899999
Q ss_pred eEEeec--ccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCceeEEEEeeeeec-c--CCccceeEe
Q 006181 199 DISLDI--LNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI-F--GGKIDKAIA 273 (658)
Q Consensus 199 ~LsL~i--~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~-~--~~Ki~~~V~ 273 (658)
.|.|++ .+..++++++..+...|.+.+ |.-. -+....+.+++.+.++|++|++|++||.|. . ..|+.+.++
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~ 329 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIE 329 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhh
Confidence 999999 457899999999999999986 5544 667788889999999999999999999983 2 258888899
Q ss_pred ccceeeccccccc-----CCCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEeCceeeeechhhhcC----C
Q 006181 274 FEEVLVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS----E 343 (658)
Q Consensus 274 fP~~LdL~~~~~~-----~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~is~eev~s----~ 343 (658)
+|-++.+..-+.. ........|.|.+||.|.|.++..|||.+-+.+ ..+.|+.+||..|..+..++|.. .
T Consensus 330 ~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r 409 (420)
T KOG1871|consen 330 YPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSR 409 (420)
T ss_pred ccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCcc
Confidence 9988877654331 112346689999999999999999999999987 56899999999999999999985 6
Q ss_pred CeEEEEEEEcC
Q 006181 344 KVYILFFIRAN 354 (658)
Q Consensus 344 ~aYmLfY~R~~ 354 (658)
+||+|+|+|.+
T Consensus 410 ~~yllyY~~~d 420 (420)
T KOG1871|consen 410 TPYLLYYIEAD 420 (420)
T ss_pred chheeEeeecC
Confidence 89999999864
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-28 Score=256.52 Aligned_cols=299 Identities=21% Similarity=0.219 Sum_probs=220.9
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccC
Q 006181 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~ 102 (658)
-+.|+||.|+|||||||+.+|+|..+|+++..+-........ .. .......++.++...|..+... ..+.
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~-----~~---t~~~a~~i~~~mR~~f~~~~~~--~~v~ 171 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGR-----GD---TWERRRRISIETRTCFRPLCEK--GAVA 171 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccC-----Cc---hhhhhhhHHHHHHHHHHhhhcc--CCcc
Confidence 467899999999999999999999999998877654421110 00 0111223455566666666665 7899
Q ss_pred hHHHHHHHHhhhhccCC------CCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccce
Q 006181 103 PAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 103 p~~l~~~L~~l~~~f~~------g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
|..+.+.+....+.|.. ..||||.|++..++..++..+...... ......+..+|++
T Consensus 172 pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~-----------------~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 172 PINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA-----------------PCLEAEAAAGFGA 234 (473)
T ss_pred hHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc-----------------cchhHHHHHhhcc
Confidence 99999999888777754 689999999999999998764321110 0234568899999
Q ss_pred EEEEEEEeCCCCCeece--eeeeeeEEeeccc-chhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecCCcee
Q 006181 177 ALQSQVKCLACGAESNK--VDEIMDISLDILN-SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNIL 253 (658)
Q Consensus 177 ~l~~~i~C~~C~~~S~~--~E~f~~LsL~i~~-~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~lP~iL 253 (658)
.+..+..|.+-...... .|.|..|..-+.. ...+...|..-+..+... .-+.-+..-...|...|.++|.+|
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~yl 309 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYL 309 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccc
Confidence 99999999876666443 7888888888875 334445555443322211 111122222334677899999999
Q ss_pred EEEEeeeeec----cCCccceeEeccceeecccccccCCCC---------------------------------------
Q 006181 254 VIQLKRFEGI----FGGKIDKAIAFEEVLVLSSFMCKASQD--------------------------------------- 290 (658)
Q Consensus 254 iI~LkRF~~~----~~~Ki~~~V~fP~~LdL~~~~~~~~~~--------------------------------------- 290 (658)
+|+..||.+. ...|+-+.|.||..||..+++.+....
T Consensus 310 Tvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~ 389 (473)
T KOG1872|consen 310 TVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEG 389 (473)
T ss_pred eEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccc
Confidence 9999999983 235888899999999999888765310
Q ss_pred ----------CCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcC-------CCeEEEEEEEc
Q 006181 291 ----------PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS-------EKVYILFFIRA 353 (658)
Q Consensus 291 ----------~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s-------~~aYmLfY~R~ 353 (658)
....|+|.|||.|.|.+..+|||++|+|...+.|++|||..|+.+..+++.+ ..||+|+|.-+
T Consensus 390 ~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 390 MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred hhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 1457999999999999999999999999988899999999999999888874 58999999754
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.88 E-value=7e-23 Score=212.30 Aligned_cols=289 Identities=21% Similarity=0.319 Sum_probs=208.7
Q ss_pred cccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC--CccChH
Q 006181 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLDAPA 104 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~--~~i~p~ 104 (658)
|||.|+.++-|+|++||+|.+.+++|+|++....... ....+...+..+++.+|+... ..++|.
T Consensus 135 VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d--------------~~~~lv~rl~~l~rklw~~r~fk~hvSph 200 (442)
T KOG2026|consen 135 VGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFD--------------NLTELVQRLGELIRKLWNPRNFKGHVSPH 200 (442)
T ss_pred eccchhhhHHHHHHHHHHHhccchhhhhhcccccccc--------------hhHHHHHHHHHHHHHhcChhhhcccCCHH
Confidence 9999999999999999999999999999987532110 112245556666777777665 678899
Q ss_pred HHHHHHHhh-hhccCCCCcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEEE
Q 006181 105 KIQSCLRIF-AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (658)
Q Consensus 105 ~l~~~L~~l-~~~f~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~~~i~ 183 (658)
++++++..+ ..+|..++|-|+.||+.|||+.||..+...+ ...++|+..|.|.++...+
T Consensus 201 e~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k--------------------~~~SIi~~~fqG~~ri~k~ 260 (442)
T KOG2026|consen 201 EFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK--------------------KASSIIHKSFQGEVRIVKE 260 (442)
T ss_pred HHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC--------------------CchhHhhHhhcceEEeeee
Confidence 888877655 5789999999999999999999999865332 2358999999999976544
Q ss_pred eCC----CCCeeceeeeeeeEEeecccchhHHHHHHhcccccc--ccCCCccccccCC---CcceeEEEEEEecCCceeE
Q 006181 184 CLA----CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEV--LDGNNKYKCDNCK---KLVSARKQMSILQSPNILV 254 (658)
Q Consensus 184 C~~----C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~--l~g~nky~C~~C~---~~~~a~K~~~I~~lP~iLi 254 (658)
-.. -.......-+|+.|+|++|..+-++|.......+++ .+-..+|.-..-. ....+ ++.++.++|++|+
T Consensus 261 ~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~~~~-~rf~l~k~P~yli 339 (442)
T KOG2026|consen 261 KQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEVVTPKLA-MRFRLTKLPRYLI 339 (442)
T ss_pred ccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeeecchhhh-hheeeecCCceEE
Confidence 332 112234567999999999975444443333222222 0000011111111 11122 7788999999999
Q ss_pred EEEeeeee--ccCCccceeEecc-ceeecccccccC--CCCCCCceEEEEEEEeecCCCCCCcEEEEEEc-CCCceEEEe
Q 006181 255 IQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKA--SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCN 328 (658)
Q Consensus 255 I~LkRF~~--~~~~Ki~~~V~fP-~~LdL~~~~~~~--~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~-~~~~Wy~fN 328 (658)
+|++||.- -+..|+.+.++|| ..+++.++.... .......|.|.|-++|. ..-|||...+++ ..+.||..+
T Consensus 340 fh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiq 416 (442)
T KOG2026|consen 340 FHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQ 416 (442)
T ss_pred EEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEec
Confidence 99999986 3457999999999 566665544332 22233689999999996 577999999998 568999999
Q ss_pred CceeeeechhhhcCCCeEEEEEEEc
Q 006181 329 DSYVSVSTLQEVLSEKVYILFFIRA 353 (658)
Q Consensus 329 Ds~Vt~is~eev~s~~aYmLfY~R~ 353 (658)
|-+|++...+-+.-..+||-+|++.
T Consensus 417 dl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 417 DLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred ccchhhhhhHHHHHHHHHHHHHhcc
Confidence 9999999999988888999888864
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.78 E-value=1.9e-18 Score=194.31 Aligned_cols=299 Identities=20% Similarity=0.243 Sum_probs=212.3
Q ss_pred CCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChH
Q 006181 25 PPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPA 104 (658)
Q Consensus 25 ~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~ 104 (658)
.+.||.-.+-+-|.|++||+|+++|+||.+++.+.. .+..|++|+|..+|.++-.+.+..+...
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C----------------~~e~CL~CELGFLF~Ml~~S~G~~Cqa~ 561 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC----------------TKEFCLLCELGFLFTMLDSSTGDPCQAN 561 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc----------------chhHHHHHHHHHHHHHHhhhcCCccchh
Confidence 348999999999999999999999999999998732 2667999999999999999998999999
Q ss_pred HHHHHHHhhhhccCCC---Cc-------------ccHHHHHHHHHHHHH--HHhHhhhhhccCCCCCCCCCCCCCcccCC
Q 006181 105 KIQSCLRIFAEHFKCG---RQ-------------EDAHEFLRYVIDACH--NTCLRLKKLRRKGGGSSGGGGGGETINGG 166 (658)
Q Consensus 105 ~l~~~L~~l~~~f~~g---~Q-------------qDA~EFl~~LLd~L~--~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (658)
+|+++|+.....-..| .+ |||..|......... ..+.......... +.......
T Consensus 562 NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~--------~~~~~vn~ 633 (1118)
T KOG1275|consen 562 NFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVD--------GESFKVNY 633 (1118)
T ss_pred HHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhccc--------Cceeeecc
Confidence 9999998775433322 11 233322222211111 0111111100111 11112345
Q ss_pred CCccccccceEEEEEEEeCCCCCeeceeeeeeeEEeecccc---------hhHHHHHHhccccccccCCCccccccCCCc
Q 006181 167 SSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS---------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKL 237 (658)
Q Consensus 167 ~siI~~lF~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~---------~sLed~L~~~~~~E~l~g~nky~C~~C~~~ 237 (658)
...+.+.|+..+.....|..|+..+.+......+.+..+.. ..+.+.|++....+. .-+-.|+.|++.
T Consensus 634 ~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~k---n~~~~C~~C~k~ 710 (1118)
T KOG1275|consen 634 APVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFK---NKQAWCETCTKP 710 (1118)
T ss_pred hhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccc---ccccccccccCC
Confidence 57899999999999999999999987766666677776652 234444444332222 112699999999
Q ss_pred ceeEEEEEEecCCceeEEEEeeeee---c---cCCccceeEeccceeecccccccC-----------------CCCCCCc
Q 006181 238 VSARKQMSILQSPNILVIQLKRFEG---I---FGGKIDKAIAFEEVLVLSSFMCKA-----------------SQDPQPE 294 (658)
Q Consensus 238 ~~a~K~~~I~~lP~iLiI~LkRF~~---~---~~~Ki~~~V~fP~~LdL~~~~~~~-----------------~~~~~~~ 294 (658)
........+..+|.+|.|...-+.. + ...|....|-+|..+.+...-... .+..-.+
T Consensus 711 ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~v 790 (1118)
T KOG1275|consen 711 EPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVV 790 (1118)
T ss_pred CCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEE
Confidence 9999999999999999998876653 1 123556678888877776431111 0123368
Q ss_pred eEEEEEEEeecCCCCCCcEEEEEEcC---------CCceEEEeCceeeeechhhhcC-----CCeEEEEE
Q 006181 295 YKLFGTIVHSGFSPDSGHYYAYIKDA---------IGRWYCCNDSYVSVSTLQEVLS-----EKVYILFF 350 (658)
Q Consensus 295 Y~L~aVI~H~G~s~~sGHYvayvr~~---------~~~Wy~fNDs~Vt~is~eev~s-----~~aYmLfY 350 (658)
|+|.|+|+|.|.+.+.+|++++|+.. +.+||.|||.-|.+|+++|++. +.|.||+|
T Consensus 791 YeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 791 YELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 99999999999888999999999851 3599999999999999999984 78999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.42 E-value=1.4e-06 Score=87.98 Aligned_cols=130 Identities=18% Similarity=0.395 Sum_probs=84.5
Q ss_pred CCccccccceEEEEEEEeCCCCCeecee--eeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEE
Q 006181 167 SSVVKEIFGGALQSQVKCLACGAESNKV--DEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQM 244 (658)
Q Consensus 167 ~siI~~lF~G~l~~~i~C~~C~~~S~~~--E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~ 244 (658)
...+.++|...+.=...|..||+..... -....++-.+|+ |- .+....--.|.+|+.+ ..++++
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pd----------wh---PLnA~h~~pCn~C~~k-sQ~rkM 185 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPD----------WH---PLNAVHFGPCNSCNSK-SQRRKM 185 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCC----------CC---cccccccCCCcccCCh-HHhHhh
Confidence 3567899999999999999999875321 111111111111 11 1111112479999863 456677
Q ss_pred EEecCCceeEEEEeeeeeccCCccceeEeccc-eeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCc
Q 006181 245 SILQSPNILVIQLKRFEGIFGGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGR 323 (658)
Q Consensus 245 ~I~~lP~iLiI~LkRF~~~~~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~ 323 (658)
.+.++|+|+++|+. .. +|. .|....|-. ....|++.+||-|.- +--|+++|+++.+|.
T Consensus 186 vlekv~~vfmLHFV---eG----------LP~ndl~~ysF~f-----eg~~Y~Vt~VIQY~~---~~~HFvtWi~~~dGs 244 (275)
T PF15499_consen 186 VLEKVPPVFMLHFV---EG----------LPHNDLQHYSFHF-----EGCLYQVTSVIQYQA---NLNHFVTWIRDSDGS 244 (275)
T ss_pred hhhcCchhhhhhhh---cc----------CCccCCCccceee-----cCeeEEEEEEEEEec---cCceeEEEEEcCCCC
Confidence 89999999999953 21 221 111122222 245899999999875 358999999999999
Q ss_pred eEEEeCce
Q 006181 324 WYCCNDSY 331 (658)
Q Consensus 324 Wy~fNDs~ 331 (658)
|..|||-+
T Consensus 245 WLecDDLk 252 (275)
T PF15499_consen 245 WLECDDLK 252 (275)
T ss_pred eEeeccCC
Confidence 99999964
No 41
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=97.13 E-value=0.002 Score=55.75 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhc
Q 006181 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFS 649 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (658)
++-|++.-..-|..|||.|+|...-|..=|. ......+.++|=..+.--| +..||+++|++|+.+++.|-
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~A----r~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPKA----RAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHHH----HHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHh
Confidence 4445555566789999999999988774333 2234457777666666555 45799999999999999985
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0014 Score=75.27 Aligned_cols=112 Identities=25% Similarity=0.235 Sum_probs=57.7
Q ss_pred cccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHH--hcCCCC--ccChH
Q 006181 29 LRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRS--LSVDLT--LDAPA 104 (658)
Q Consensus 29 L~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l--~~~~~~--~i~p~ 104 (658)
|.|.||+||.||+||+|..+|+|+.-+..+...........+..........+-.+.+....... ...... ...-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999976655432110000000111111111111111111111111 111111 11122
Q ss_pred HHHHHHHh---hhhccCCCCcccHHHHHHHHHHHHHHHh
Q 006181 105 KIQSCLRI---FAEHFKCGRQEDAHEFLRYVIDACHNTC 140 (658)
Q Consensus 105 ~l~~~L~~---l~~~f~~g~QqDA~EFl~~LLd~L~~el 140 (658)
.+...+.. ....|....|+||++++..++..+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 22222221 2345777899999999999988887653
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.58 E-value=0.00076 Score=73.88 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCC--Cc
Q 006181 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TL 100 (658)
Q Consensus 23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~--~~ 100 (658)
.|...|++-.-|.||+||.|-+++.-......++-..+.... .. .-...--.|...+.+.++... ..
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~d-----~~------nYse~q~~LRseiVnplr~n~fVr~ 433 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPSD-----SM------NYSEMQHSLRSEIVNPLRRNQFVRQ 433 (724)
T ss_pred hcccccccCCcchhhccccccccccccccccccccCCCCccc-----cc------ccHHHHHHHHHhhhchhhhcceeec
Confidence 466679999999999999998887554443333222111100 00 000001122233333333332 23
Q ss_pred cChHHHHHHHHhhhhccCC-CCcccHHHHHHHHHHHHHH
Q 006181 101 DAPAKIQSCLRIFAEHFKC-GRQEDAHEFLRYVIDACHN 138 (658)
Q Consensus 101 i~p~~l~~~L~~l~~~f~~-g~QqDA~EFl~~LLd~L~~ 138 (658)
.....++..|..++...+. .+..|+.|||.-++..+-.
T Consensus 434 ~~~mklR~~ldql~~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 434 NPAMKLRVELDQLNFRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred CHHHHHHHHHHhhhccccCcccccCHHHHHHHHHHHhcc
Confidence 3445566666666544432 2567999999988887654
No 44
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.00074 Score=78.03 Aligned_cols=218 Identities=15% Similarity=0.183 Sum_probs=129.8
Q ss_pred CcccHHHHHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCc-ccCCCCccccccceEEEEEEEeCCCCCeecee-eeee
Q 006181 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGET-INGGSSVVKEIFGGALQSQVKCLACGAESNKV-DEIM 198 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~-~~~~~siI~~lF~G~l~~~i~C~~C~~~S~~~-E~f~ 198 (658)
...++.++|..++..|+........+.... ..-...+..| .....++++++|+.....+..|..|....+-. ..-+
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~--~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~ 625 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVV--VAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSY 625 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHH--HHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhh
Confidence 455788899999888887654221100000 0000111112 12234788999999999999999998876532 1112
Q ss_pred eEEeeccc---------chhHHHHHHhccccccccCCCccccc----cCCCcceeEEEEEEecCCceeEEEEeeeeeccC
Q 006181 199 DISLDILN---------SCSLKEAMQKFFQPEVLDGNNKYKCD----NCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 199 ~LsL~i~~---------~~sLed~L~~~~~~E~l~g~nky~C~----~C~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
.+.+.... ..++++.|.. ...+ .+..|+ +|++..-.. ..|..+|+|++|.+.+-.--+.
T Consensus 626 ~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~-----~~m~cD~~~gGCgk~n~v~--h~is~~P~vftIvlewEk~ETe 697 (806)
T KOG1887|consen 626 GIVIAADSLRQLKCAFQNITFEDILKN-IRMN-----DKMLCDKETGGCGKANLVH--HILSPCPPVFTIVLEWEKSETE 697 (806)
T ss_pred hhhccchhhhhHHHHhhhhhHHHHHHH-hhhh-----hhhcccccCCCCcchhhhh--hhcCCCCCeeEeeeehhcccch
Confidence 22222221 2333344433 1211 124454 477644333 3488899999997665321111
Q ss_pred C-ccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceE--EEeCceeeee-chhhhc
Q 006181 266 G-KIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY--CCNDSYVSVS-TLQEVL 341 (658)
Q Consensus 266 ~-Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHYvayvr~~~~~Wy--~fNDs~Vt~i-s~eev~ 341 (658)
. --.+...+..++|++..+. ...++...|+|+++|..+.. .++|.|+.+. .++|+ ..+|..+..+ +|.+|+
T Consensus 698 ~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 698 KEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred HHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 1 1123344567788887665 33457789999999998741 5999999999 67788 9999988887 577776
Q ss_pred C------CCeEEEEEEEc
Q 006181 342 S------EKVYILFFIRA 353 (658)
Q Consensus 342 s------~~aYmLfY~R~ 353 (658)
+ -.+-+|||++.
T Consensus 773 r~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEAQ 790 (806)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 4 24677777653
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=95.15 E-value=0.26 Score=52.78 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=38.5
Q ss_pred cccccCCCcchHHHHHHHHhcChH-HHHHHHhcccchhhhhccCCCchhhhhccCchHHHHHHHHHHHhcCCCCccChHH
Q 006181 27 LGLRNLGNSCYLNSVLQCLTYTPP-LANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~ip~-Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~~i~p~~ 105 (658)
+=|+=.-|+||+||++=+|-++.. |+... +.++...| ..-+|..
T Consensus 103 ~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~---------------------------l~~aw~~f--------~~G~~~~ 147 (320)
T PF08715_consen 103 RVLKQSDNNCWVNAACLQLQALKIKFKSPG---------------------------LDEAWNEF--------KAGDPAP 147 (320)
T ss_dssp EEE---TTTHHHHHHHHHHTTST--BSSHH---------------------------HHHHHHHH--------HTT--HH
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCccCCHH---------------------------HHHHHHHH--------hCCChHH
Confidence 455556799999999977765542 22211 11111111 1334666
Q ss_pred HHHHHHhhhhccCCCCcccHHHHHHHHHHHHHH
Q 006181 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHN 138 (658)
Q Consensus 106 l~~~L~~l~~~f~~g~QqDA~EFl~~LLd~L~~ 138 (658)
|...+... .....|+..||+++|..|++.+..
T Consensus 148 fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 148 FVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 66655543 345568899999999999886653
No 46
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=94.91 E-value=0.091 Score=44.09 Aligned_cols=63 Identities=21% Similarity=0.422 Sum_probs=49.4
Q ss_pred hhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhcc
Q 006181 581 SSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSD 650 (658)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (658)
-+-|--|||-|+|-...|. -+-|-|. +. --+.+|+++.----+--+|++.|..|..|+|-|-.
T Consensus 25 ~trLvECGW~d~ik~mcrn----iimEkG~--~n-~tvdqL~AeitPkaRaLVPd~VKkEll~rirt~L~ 87 (92)
T KOG4479|consen 25 HTRLVECGWHDDIKEMCRN----IIMEKGV--DN-ITVDQLAAEITPKARALVPDVVKKELLLRIRTALD 87 (92)
T ss_pred HHHHHHcccHHHHHHHHHH----HHHHhcc--cc-ccHHHHHHHhCchhhhhchHHHHHHHHHHHHHHHH
Confidence 4668889999999776544 5677777 33 34678888877777778999999999999998754
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=88.60 E-value=0.2 Score=48.83 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=35.9
Q ss_pred EEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeeeechhhhcCCCeEEEEEEEcCCCCCCC
Q 006181 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSA 360 (658)
Q Consensus 298 ~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~is~eev~s~~aYmLfY~R~~~~~~~~ 360 (658)
.+.|.-.|. ||.+.+.+. .+.||.+||+.+.+.++... -+|.|+.-+..|...
T Consensus 130 ~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Epl~~ 182 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPLPV 182 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-TT-
T ss_pred hhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCcccCCc
Confidence 444555564 999999998 88999999999998754332 247788887776553
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=78.58 E-value=7.9 Score=38.02 Aligned_cols=22 Identities=41% Similarity=0.788 Sum_probs=15.8
Q ss_pred cccccCCCcchHHHHHHHHhcC
Q 006181 27 LGLRNLGNSCYLNSVLQCLTYT 48 (658)
Q Consensus 27 vGL~N~GNTCYlNSvLQ~L~~i 48 (658)
.|+.|.+|+||+||++|++...
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SSSTHHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHHc
Confidence 5999999999999999998643
No 49
>PF14353 CpXC: CpXC protein
Probab=62.77 E-value=9.7 Score=35.08 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=28.2
Q ss_pred EEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcc
Q 006181 181 QVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLV 238 (658)
Q Consensus 181 ~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~ 238 (658)
+++|..|+...... ..-.++....+.+.+.|- ..+... +.|+.||...
T Consensus 1 ~itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il---~g~l~~----~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFE---VWTSINADEDPELKEKIL---DGSLFS----FTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHH---cCCcCE----EECCCCCCce
Confidence 36899999875432 123344444445555543 233333 9999999754
No 50
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=44.98 E-value=19 Score=29.27 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=27.8
Q ss_pred CccccccCCCcceeEEEEEEe--cCCceeEEEEeeeee
Q 006181 227 NKYKCDNCKKLVSARKQMSIL--QSPNILVIQLKRFEG 262 (658)
Q Consensus 227 nky~C~~C~~~~~a~K~~~I~--~lP~iLiI~LkRF~~ 262 (658)
+++.|++|+...-.++..... .+-+++=||.++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 356799999877777765554 678899999999864
No 51
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=39.09 E-value=43 Score=38.71 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=42.4
Q ss_pred ceeEEEEeeeee----------ccC-CccceeEeccceeecccccccCCCCCCCceEEEEEEEeecCCCC----------
Q 006181 251 NILVIQLKRFEG----------IFG-GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPD---------- 309 (658)
Q Consensus 251 ~iLiI~LkRF~~----------~~~-~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~---------- 309 (658)
.+|++.+.|-.. .+. .-++.++++..++.+. .-.|+|.+.|||.-...-
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 689999988532 111 2345556666666665 458999999999642211
Q ss_pred -CCcEEEEEEcCCCceEEEeCcee
Q 006181 310 -SGHYYAYIKDAIGRWYCCNDSYV 332 (658)
Q Consensus 310 -sGHYvayvr~~~~~Wy~fNDs~V 332 (658)
-|||+ .++. ...||.+|-..|
T Consensus 549 lkG~yt-IlfT-e~Gpw~YDP~s~ 570 (666)
T PF03292_consen 549 LKGYYT-ILFT-EMGPWMYDPLSI 570 (666)
T ss_pred eceeEE-EEEe-cCCceeeCchhh
Confidence 26665 4555 344666665443
No 52
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=32.47 E-value=54 Score=31.61 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.7
Q ss_pred EEEEEEeecCCCCCCcEEEEEEcCCCceEEEeCceeee
Q 006181 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSV 334 (658)
Q Consensus 297 L~aVI~H~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~ 334 (658)
..|+||+.+ .|++|..|- ++.||-+|-..-.+
T Consensus 99 ~~gfI~N~~-----~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEeccC-----cceEEEEee-CCeeEeccCCCCCC
Confidence 478999966 899998888 89999999755443
No 53
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=24.82 E-value=73 Score=19.17 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.9
Q ss_pred EEEcCCCceEEEeCc
Q 006181 316 YIKDAIGRWYCCNDS 330 (658)
Q Consensus 316 yvr~~~~~Wy~fNDs 330 (658)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5666 6899999875
No 54
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=23.94 E-value=1.9e+02 Score=25.66 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=37.2
Q ss_pred ceEEEEEEEeCCCCCeeceeeeeeeEEeecccchhHHHHHHhccccccccCCCccccccCCCcceeEEEEEEecC
Q 006181 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 175 ~G~l~~~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~K~~~I~~l 249 (658)
.|...++..|..|.+..........=.. +....+++.|..--.-+..+. -.-.|++|+....--.++.+.++
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~--~~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKY--PKLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeecccc--CchhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeeccC
Confidence 3445788899999998653322211111 112345555543211122211 12689999986665555555443
No 55
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.77 E-value=2.5e+02 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=21.9
Q ss_pred CceEEEEEEEeecCCCCCCcEEEEEEc
Q 006181 293 PEYKLFGTIVHSGFSPDSGHYYAYIKD 319 (658)
Q Consensus 293 ~~Y~L~aVI~H~G~s~~sGHYvayvr~ 319 (658)
..-+.+|+|+-......+-||+|||.+
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 356789999998865566899999987
No 56
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.66 E-value=2.1e+02 Score=27.52 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHHhHhhh
Q 006181 124 DAHEFLRYVIDACHNTCLRLK 144 (658)
Q Consensus 124 DA~EFl~~LLd~L~~el~~~~ 144 (658)
|..+....|...++.......
T Consensus 78 ~~~~i~d~Ik~~~~~~~~~lk 98 (158)
T TIGR00373 78 NYEKALDVLKRKLEETAKKLR 98 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777766554443
Done!