Query 006182
Match_columns 658
No_of_seqs 284 out of 1375
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 19:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 6.9E-66 1.5E-70 555.5 29.1 306 23-353 105-410 (545)
2 cd02661 Peptidase_C19E A subfa 100.0 5E-56 1.1E-60 467.2 30.6 304 26-351 1-304 (304)
3 cd02668 Peptidase_C19L A subfa 100.0 6.5E-56 1.4E-60 473.2 29.5 298 28-351 1-324 (324)
4 cd02660 Peptidase_C19D A subfa 100.0 1.2E-55 2.5E-60 471.1 30.4 301 27-351 1-328 (328)
5 cd02663 Peptidase_C19G A subfa 100.0 8.4E-56 1.8E-60 467.5 28.2 286 28-351 1-300 (300)
6 cd02664 Peptidase_C19H A subfa 100.0 1.9E-55 4.1E-60 470.4 26.1 276 28-351 1-327 (327)
7 cd02671 Peptidase_C19O A subfa 100.0 6.9E-55 1.5E-59 466.0 28.1 280 19-351 17-332 (332)
8 cd02667 Peptidase_C19K A subfa 100.0 5.4E-54 1.2E-58 449.3 25.0 246 28-351 1-279 (279)
9 cd02659 peptidase_C19C A subfa 100.0 3.8E-53 8.2E-58 452.8 28.1 295 26-354 2-333 (334)
10 cd02658 Peptidase_C19B A subfa 100.0 6.6E-53 1.4E-57 447.0 27.5 277 28-351 1-311 (311)
11 cd02657 Peptidase_C19A A subfa 100.0 8.1E-53 1.8E-57 445.0 26.9 283 28-351 1-305 (305)
12 cd02669 Peptidase_C19M A subfa 100.0 3.2E-50 6.9E-55 445.7 30.0 293 26-351 119-440 (440)
13 COG5560 UBP12 Ubiquitin C-term 100.0 1.9E-50 4E-55 435.5 14.9 324 22-354 262-823 (823)
14 COG5533 UBP5 Ubiquitin C-termi 100.0 2.8E-48 6.2E-53 389.7 18.1 330 16-353 61-414 (415)
15 cd02662 Peptidase_C19F A subfa 100.0 1.4E-47 3.1E-52 392.4 23.0 209 28-351 1-240 (240)
16 COG5077 Ubiquitin carboxyl-ter 100.0 9.2E-48 2E-52 420.1 8.4 312 9-360 177-518 (1089)
17 cd02674 Peptidase_C19R A subfa 100.0 2.8E-45 6.1E-50 371.1 20.7 200 121-351 21-230 (230)
18 KOG1866 Ubiquitin carboxyl-ter 100.0 9.8E-46 2.1E-50 404.2 4.8 318 9-359 79-440 (944)
19 PF00443 UCH: Ubiquitin carbox 100.0 1.6E-42 3.6E-47 353.9 24.5 256 26-350 1-269 (269)
20 cd02666 Peptidase_C19J A subfa 100.0 2.2E-43 4.9E-48 377.6 18.1 285 26-351 1-343 (343)
21 KOG1868 Ubiquitin C-terminal h 100.0 1.3E-43 2.7E-48 399.0 14.6 327 22-357 297-650 (653)
22 KOG0944 Ubiquitin-specific pro 100.0 5.2E-42 1.1E-46 373.4 18.5 312 4-354 280-763 (763)
23 cd02665 Peptidase_C19I A subfa 100.0 6.8E-42 1.5E-46 345.5 17.8 197 121-351 21-228 (228)
24 cd02673 Peptidase_C19Q A subfa 100.0 6.5E-41 1.4E-45 343.6 20.9 214 114-351 25-245 (245)
25 cd02257 Peptidase_C19 Peptidas 100.0 7.7E-40 1.7E-44 329.0 22.3 215 121-351 21-255 (255)
26 KOG1867 Ubiquitin-specific pro 100.0 4E-40 8.7E-45 364.5 17.3 309 26-356 161-487 (492)
27 KOG4598 Putative ubiquitin-spe 100.0 4.5E-41 9.7E-46 363.8 2.9 265 26-357 87-445 (1203)
28 KOG1863 Ubiquitin carboxyl-ter 100.0 5.4E-38 1.2E-42 378.0 14.6 307 17-359 161-491 (1093)
29 COG5207 UBP14 Isopeptidase T [ 100.0 3.3E-37 7.2E-42 325.8 17.8 316 3-353 275-749 (749)
30 KOG1873 Ubiquitin-specific pro 100.0 4.4E-37 9.6E-42 337.7 10.4 324 27-353 206-877 (877)
31 cd02672 Peptidase_C19P A subfa 100.0 2.9E-36 6.3E-41 313.1 14.1 234 22-351 12-268 (268)
32 KOG1870 Ubiquitin C-terminal h 100.0 6E-35 1.3E-39 344.0 14.9 321 23-354 244-842 (842)
33 PF13423 UCH_1: Ubiquitin carb 100.0 1.1E-32 2.4E-37 290.7 23.6 280 27-332 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 7.2E-32 1.6E-36 274.8 14.8 176 121-351 22-241 (241)
35 KOG1864 Ubiquitin-specific pro 100.0 1.2E-31 2.7E-36 301.4 14.6 317 27-354 233-573 (587)
36 KOG1871 Ubiquitin-specific pro 100.0 2.6E-28 5.6E-33 253.6 12.8 315 24-354 26-420 (420)
37 KOG1872 Ubiquitin-specific pro 99.9 2.8E-28 6.1E-33 259.4 6.8 299 23-353 102-469 (473)
38 KOG2026 Spindle pole body prot 99.9 9.4E-23 2E-27 211.4 11.1 282 24-353 133-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 4E-18 8.7E-23 191.8 13.4 298 26-350 499-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.4 2.3E-06 5E-11 86.4 11.4 128 167-331 120-252 (275)
41 PF10163 EnY2: Transcription f 97.1 0.0019 4.2E-08 55.8 7.9 70 573-649 16-85 (86)
42 KOG1864 Ubiquitin-specific pro 96.9 0.0016 3.5E-08 74.8 7.2 109 29-140 34-152 (587)
43 KOG1887 Ubiquitin carboxyl-ter 96.2 0.0011 2.4E-08 76.6 -0.0 218 121-353 548-790 (806)
44 KOG3556 Familial cylindromatos 95.8 0.0029 6.2E-08 69.5 0.7 101 23-138 365-472 (724)
45 PF08715 Viral_protease: Papai 95.1 0.22 4.8E-06 53.3 12.0 76 27-138 103-179 (320)
46 KOG4479 Transcription factor e 94.9 0.09 2E-06 44.1 6.4 63 581-650 25-87 (92)
47 PF05408 Peptidase_C28: Foot-a 88.0 0.23 5E-06 48.4 1.2 52 298-359 130-181 (193)
48 PF05408 Peptidase_C28: Foot-a 78.1 9.9 0.00022 37.3 7.8 22 27-48 34-55 (193)
49 PF14353 CpXC: CpXC protein 60.8 13 0.00027 34.3 4.4 49 181-239 1-49 (128)
50 COG3478 Predicted nucleic-acid 45.0 19 0.0004 29.4 2.3 36 227-262 3-40 (68)
51 PF03292 Pox_P4B: Poxvirus P4B 34.1 57 0.0012 37.8 4.9 71 251-333 479-571 (666)
52 PF02099 Josephin: Josephin; 29.6 69 0.0015 30.9 4.0 32 297-334 99-130 (157)
53 KOG2906 RNA polymerase III sub 29.2 1.1E+02 0.0024 27.1 4.8 72 175-249 15-86 (105)
54 PF01473 CW_binding_1: Putativ 26.3 66 0.0014 19.4 2.1 14 316-330 3-16 (19)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-66 Score=555.49 Aligned_cols=306 Identities=44% Similarity=0.805 Sum_probs=286.3
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccC
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~ 102 (658)
.+.+.||.|+|||||+||+||||.++||+.+||+...+...| . +...|++|.++..+.+.+...+.++.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C-----~------~~~~C~lc~~q~hi~~A~~~~g~pis 173 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSC-----H------RAKFCMLCTFQAHITRALHNPGHPIS 173 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhc-----c------ccCeeeehHHHHHHHHHhcCCCCccC
Confidence 477789999999999999999999999999999999998777 3 37789999999999999999988999
Q ss_pred hHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEE
Q 006182 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 103 p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i 182 (658)
|..|+..|+.+...|+.|.|+||||||+++++.|+..|..... ......+..++|+++|+|.+++++
T Consensus 174 P~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-------------~~~~~sq~ttlv~~iFGG~LrS~v 240 (545)
T KOG1865|consen 174 PSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-------------QVDPRSQDTTLVHQIFGGYLRSQI 240 (545)
T ss_pred hHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-------------cCCcccccceehhhhhccchhhce
Confidence 9999999999999999999999999999999999999862221 111224567899999999999999
Q ss_pred EeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeee
Q 006182 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 183 ~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
+|..|.+++.++|+.++|+|.|....+|++||+.|+..|.|+|+|+|+|++|+++..|.|+++|.++|+||+|+||||+.
T Consensus 241 kC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~ 320 (545)
T KOG1865|consen 241 KCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN 320 (545)
T ss_pred ecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcC
Q 006182 263 IFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS 342 (658)
Q Consensus 263 ~~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s 342 (658)
.+.+||.+.|.||++|||.+||+. ..+...+|.|+|||+|.|.+..+|||+||||...|+||.+||+.|+.++.+.|++
T Consensus 321 ~~~gKI~K~I~fPE~LDl~PyMS~-~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs 399 (545)
T KOG1865|consen 321 GTGGKISKPVSFPETLDLQPYMSQ-PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS 399 (545)
T ss_pred CcccccccccCCcccccccccccC-CCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence 888999999999999999999993 3456789999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEc
Q 006182 343 EKVYILFFIRA 353 (658)
Q Consensus 343 ~~aYlLfY~R~ 353 (658)
+.||||||.|.
T Consensus 400 q~AYmLfY~R~ 410 (545)
T KOG1865|consen 400 QQAYILFYARK 410 (545)
T ss_pred ccceEEEEEee
Confidence 99999999998
No 2
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-56 Score=467.16 Aligned_cols=304 Identities=50% Similarity=0.867 Sum_probs=269.3
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
|+||.|+||||||||+||+|+++|+||++++...+...+ .....|++|++..++.+++......+.|..
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ 69 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC-----------CNEGFCMMCALEAHVERALASSGPGSAPRI 69 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhc-----------cCCcchHHHHHHHHHHHHHhCCCCccChHH
Confidence 689999999999999999999999999999876543221 123458899999999999888878899999
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeC
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~ 185 (658)
|..++..+.+.|..+.||||+|||.+||+.|+.++........ .........+++.++|+|.+.+.++|.
T Consensus 70 ~~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~i~~~F~g~~~~~~~C~ 139 (304)
T cd02661 70 FSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLK----------AVDPSSQETTLVQQIFGGYLRSQVKCL 139 (304)
T ss_pred HHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhccccc----------ccCccccCCChhhhcCCcEEeeeEEeC
Confidence 9999999999999999999999999999999988654322100 001122345789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeeccC
Q 006182 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
.|+..+.+.+.|+.|+|++++..+|+++|+.++.+|.++++++|.|++|++...+.++..|.++|++|+|||+||.++..
T Consensus 140 ~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~ 219 (304)
T cd02661 140 NCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG 219 (304)
T ss_pred CCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCc
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999998756
Q ss_pred CccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCe
Q 006182 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKV 345 (658)
Q Consensus 266 ~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~a 345 (658)
.|+.+.|.||.+|+|.+|+... ......|+|+|||+|.|.++++|||++|+|+++++||+|||+.|+++++++|+++.|
T Consensus 220 ~Ki~~~v~f~~~L~l~~~~~~~-~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~a 298 (304)
T cd02661 220 GKINKQISFPETLDLSPYMSQP-NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKA 298 (304)
T ss_pred cccCCeEecCCeechhhccccC-CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCc
Confidence 8999999999999999998753 245689999999999997679999999999988999999999999999999999999
Q ss_pred EEEEEE
Q 006182 346 YILFFI 351 (658)
Q Consensus 346 YlLfY~ 351 (658)
|||||.
T Consensus 299 Yil~Y~ 304 (304)
T cd02661 299 YILFYI 304 (304)
T ss_pred EEEEeC
Confidence 999994
No 3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-56 Score=473.25 Aligned_cols=298 Identities=26% Similarity=0.445 Sum_probs=254.3
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHHHH
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++..........-+ . ..+......++++++..+|..++.+....++|..|.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKN-M-PPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCccccccccc-c-cccCCcccchHHHHHHHHHHHHHhCCCceEChHHHH
Confidence 89999999999999999999999999998865432110000 0 000011234788999999999998888899999999
Q ss_pred HHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCC
Q 006182 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C 187 (658)
.++. |..++||||+||+..||+.|+.++..... ....++|.++|.|.+...++|..|
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~------------------~~~~~~i~~~F~G~~~~~~~C~~C 135 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN------------------PDLKNIVQDLFRGEYSYVTQCSKC 135 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC------------------CcccchhhhhcceEEEEEEEeCCC
Confidence 8874 66789999999999999999988653210 123468999999999999999999
Q ss_pred CCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc---
Q 006182 188 GAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--- 264 (658)
Q Consensus 188 ~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--- 264 (658)
+..+.+.|+|+.|+|++++..+|+++|+.|+.+|.++|+++|.|++|++.+.+.++..|.++|+||+|||+||.++.
T Consensus 136 ~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~ 215 (324)
T cd02668 136 GRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTG 215 (324)
T ss_pred CCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCceeeecchhhh--
Q 006182 265 -GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEV-- 340 (658)
Q Consensus 265 -~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~v~~eev-- 340 (658)
..|+++.|.||+.|||.+|+.... .....|+|+|||+|.|.++++|||+||+|+. +++||+|||+.|++++++.+
T Consensus 216 ~~~Ki~~~v~fp~~Ldl~~~~~~~~-~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~ 294 (324)
T cd02668 216 AKKKLNASISFPEILDMGEYLAESD-EGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKL 294 (324)
T ss_pred cceeCCcEEECCCeEechhhccccc-CCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhc
Confidence 369999999999999999986543 3567899999999999778999999999985 48999999999999987766
Q ss_pred -------------------cCCCeEEEEEE
Q 006182 341 -------------------LSEKVYILFFI 351 (658)
Q Consensus 341 -------------------~s~~aYlLfY~ 351 (658)
.+..||||||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 295 GNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred ccccccccccccccCCCccccCceEEEEeC
Confidence 24689999996
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-55 Score=471.06 Aligned_cols=301 Identities=33% Similarity=0.585 Sum_probs=260.9
Q ss_pred cccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC-CCCccChHH
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLTLDAPAK 105 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~i~p~~ 105 (658)
+||.|+||||||||+||+|+++|+||++++...+...+ .......|+.|++.+++..++.. ....+.|..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 71 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTC---------LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPIN 71 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccc---------ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHH
Confidence 59999999999999999999999999999986543211 01224568899999999988443 346789999
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeC
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~ 185 (658)
|+.++....+.|..+.||||+|||..||+.|++++....+.. .......++|.++|+|.+.+.++|.
T Consensus 72 ~l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-------------~~~~~~~~~i~~~F~g~~~~~~~C~ 138 (328)
T cd02660 72 LLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA-------------NDESHCNCIIHQTFSGSLQSSVTCQ 138 (328)
T ss_pred HHHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhcccccc-------------cccccCCceeEEecccEEEeeeEcC
Confidence 999998888889999999999999999999999876432210 0011335789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccch---------------hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCC
Q 006182 186 ACGAESNKVDEIMDISLDILNS---------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~---------------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP 250 (658)
.|+..+.+.|+|+.|+|+++.. .+|+++|+.|+.+|.+++.+ |.|++|+....+.++..|.++|
T Consensus 139 ~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP 217 (328)
T cd02660 139 RCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLP 217 (328)
T ss_pred CCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCC
Confidence 9999999999999999999875 89999999999999999877 9999999999999999999999
Q ss_pred ceeEEEEeeeeecc---CCccceeEecccccccchhccc--------CCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEc
Q 006182 251 NILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCK--------ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD 319 (658)
Q Consensus 251 ~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~--------~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~ 319 (658)
++|+|||+||.++. ..|+...|.||.+|||.+|+.. ........|+|+|||+|.| +.++|||++|+|.
T Consensus 218 ~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~ 296 (328)
T cd02660 218 PVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQ 296 (328)
T ss_pred ceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEEC
Confidence 99999999999854 3699999999999999999885 2234567899999999999 6889999999999
Q ss_pred CCCcEEEEeCceeeecchhhhcCCCeEEEEEE
Q 006182 320 AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 320 ~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~ 351 (658)
.+++||+|||+.|+++++++|+...||||||.
T Consensus 297 ~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 297 GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 77999999999999999999999999999994
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-56 Score=467.52 Aligned_cols=286 Identities=30% Similarity=0.481 Sum_probs=246.5
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCC--CccChHH
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLDAPAK 105 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~i~p~~ 105 (658)
||.|+||||||||+||+|++ .++++.|..+|..++.... .+++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------------------ENLLTCLKDLFESISEQKKRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHH
Confidence 89999999999999999987 1245677777887776543 5799999
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeC
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~ 185 (658)
|.++|....+.|..++||||+|||..||+.|++++....+..... .............++|.++|+|.+.+.++|.
T Consensus 49 f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 49 FITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN----RKLNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred HHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc----ccccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 999999988999999999999999999999999987654322111 0001111123446789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc-
Q 006182 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~- 264 (658)
.|+..+.+.|+|++|+|+|+...+|+++|+.|+.+|.++++++|.|++|+..+.+.|+..|.++|+||+|||+||.++.
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~ 204 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQ 204 (300)
T ss_pred CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred ---CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhc
Q 006182 265 ---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVL 341 (658)
Q Consensus 265 ---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~ 341 (658)
..|+...|.||..|+|..+... .......|+|+|||+|.|.++++|||+||+|+ ++.||+|||+.|+++++++|.
T Consensus 205 ~~~~~Ki~~~v~fp~~L~~~~~~~~-~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~ 282 (300)
T cd02663 205 LNRYIKLFYRVVFPLELRLFNTTDD-AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVE 282 (300)
T ss_pred cCCceecCceEecCcEEeccccccc-cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHH
Confidence 3699999999999999877432 22345799999999999966899999999999 899999999999999999986
Q ss_pred --------CCCeEEEEEE
Q 006182 342 --------SEKVYILFFI 351 (658)
Q Consensus 342 --------s~~aYlLfY~ 351 (658)
+.+||||||+
T Consensus 283 ~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 283 EFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred HhcCCCCCCCceEEEEeC
Confidence 5789999995
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-55 Score=470.35 Aligned_cols=276 Identities=33% Similarity=0.635 Sum_probs=239.0
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH-H
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK-I 106 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~-l 106 (658)
||.|+||||||||+||+|+++|+||++++....... ....+.+++++.++..+.......+.|.. +
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~-------------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~ 67 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL-------------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYF 67 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc-------------CCcchHHHHHHHHHHHHhhcCCcccCCHHHH
Confidence 899999999999999999999999999998764311 12234567777777777665555666665 6
Q ss_pred HHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCC
Q 006182 107 QSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLA 186 (658)
Q Consensus 107 ~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~ 186 (658)
+.++. .+.|..++||||+||+..||+.|+. +|.++|+|.+.+.++|..
T Consensus 68 l~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~------------------------------~i~~~F~G~~~~~i~C~~ 115 (327)
T cd02664 68 LEASR--PPWFTPGSQQDCSEYLRYLLDRLHT------------------------------LIEKMFGGKLSTTIRCLN 115 (327)
T ss_pred HHHhc--ccccCCCCcCCHHHHHHHHHHHHHH------------------------------HHHhhCcEEeEeEEEcCC
Confidence 55543 4678889999999999999999982 578999999999999999
Q ss_pred CCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeeccC-
Q 006182 187 CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG- 265 (658)
Q Consensus 187 C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~- 265 (658)
|+..+.+.|+|..|+|+++ +|+++|+.|+.+|.++|+++|+|++|++.+.+.++..|.++|+||+|||+||.++..
T Consensus 116 C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~ 192 (327)
T cd02664 116 CNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKT 192 (327)
T ss_pred CCCEecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcccc
Confidence 9999999999999999998 899999999999999999999999999999999999999999999999999998542
Q ss_pred ---CccceeEecccccccchhcccC------------------CCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC---
Q 006182 266 ---GKIDKAIAFEEVLVLSSFMCKA------------------SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI--- 321 (658)
Q Consensus 266 ---~Ki~~~V~fP~~LdL~~~~~~~------------------~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~--- 321 (658)
.|+++.|.||..|||..++... .......|+|+|||+|.|.++++|||+||+|...
T Consensus 193 ~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~ 272 (327)
T cd02664 193 HVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDAD 272 (327)
T ss_pred CcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccc
Confidence 6999999999999999886311 1124578999999999997789999999999854
Q ss_pred ------------------CcEEEEeCceeeecchhhhcC-------CCeEEEEEE
Q 006182 322 ------------------GRWYCCNDSYVSVSTLQEVLS-------EKVYILFFI 351 (658)
Q Consensus 322 ------------------~~Wy~fNDs~Vt~v~~eev~s-------~~aYlLfY~ 351 (658)
+.||+|||+.|+.+++++|.+ .+||||||+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 273 STGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 799999999999999999986 799999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-55 Score=465.96 Aligned_cols=280 Identities=30% Similarity=0.480 Sum_probs=237.3
Q ss_pred ccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCC
Q 006182 19 KRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL 98 (658)
Q Consensus 19 ~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 98 (658)
+|+..-.++||.|+||||||||+||+|+++|+||+.++........ ......+...+..++....
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~---------------~~~~q~~~~~l~~~~~~~~ 81 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISS---------------VEQLQSSFLLNPEKYNDEL 81 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccCc---------------HHHHHHHHHHHHHHHhhcc
Confidence 4444455599999999999999999999999999998765311100 0011122222333444444
Q ss_pred CccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEE
Q 006182 99 TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGAL 178 (658)
Q Consensus 99 ~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l 178 (658)
....|..|+.+++...+.|..++||||+|||..||+.|+. .|.++|+|.+
T Consensus 82 ~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~------------------------------~i~~~F~g~~ 131 (332)
T cd02671 82 ANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQE------------------------------LVEKDFQGQL 131 (332)
T ss_pred cccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHH------------------------------HHHhhhceEE
Confidence 5567999999999999999999999999999999999984 4678999999
Q ss_pred EEEEEeCCCCCeeceeeeeeeEEeeccch-------------------hhHHHHHHhhccccccCCCCccccccCCccce
Q 006182 179 QSQVKCLACGAESNKVDEIMDISLDILNS-------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 179 ~s~i~C~~C~~~S~~~E~f~~LsL~i~~~-------------------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~ 239 (658)
.+.++|..|+..+.+.|+|++|+|+++.. .+|++||+.|+.+|.++|+|+|+|++|+..+.
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~ 211 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTE 211 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCcee
Confidence 99999999999999999999999999864 48999999999999999999999999999999
Q ss_pred eeEEEEEeeCCceeEEEEeeeeecc--------CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCC
Q 006182 240 ARKQMSILQSPNILVIQLKRFEGIF--------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSG 311 (658)
Q Consensus 240 a~K~~~I~~lP~iLiI~LkRF~~~~--------~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sG 311 (658)
+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|++.++... .....|+|+|||+|.|.+.++|
T Consensus 212 a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---~~~~~Y~L~~VI~H~G~~~~~G 288 (332)
T cd02671 212 AERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK---PKNDVYRLFAVVMHSGATISSG 288 (332)
T ss_pred EEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC---CCCCeEEEEEEEEEcCCCCCCC
Confidence 9999999999999999999999632 3699999999999999877543 3467999999999999778999
Q ss_pred eEEEEEEcCCCcEEEEeCceeeecchhhhc---------CCCeEEEEEE
Q 006182 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVL---------SEKVYILFFI 351 (658)
Q Consensus 312 HYvayvr~~~~~Wy~fNDs~Vt~v~~eev~---------s~~aYlLfY~ 351 (658)
||+||+| ||+|||+.|+.++++++. ..+||||||+
T Consensus 289 HY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 289 HYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred eEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999999 999999999999987775 2689999995
No 8
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-54 Score=449.31 Aligned_cols=246 Identities=39% Similarity=0.727 Sum_probs=223.3
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHHHH
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++. .|..|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------------------~P~~~~ 36 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------------------TPKELF 36 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------------CHHHHH
Confidence 899999999999999999999999999875 556666
Q ss_pred HHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCC
Q 006182 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C 187 (658)
..+....+.|..++||||+|||..||+.|+. +|.++|.|.+.+.++|..|
T Consensus 37 ~~l~~~~~~f~~~~QqDA~Efl~~lld~l~~------------------------------~i~~~F~G~~~~~i~C~~C 86 (279)
T cd02667 37 SQVCRKAPQFKGYQQQDSHELLRYLLDGLRT------------------------------FIDSIFGGELTSTIMCESC 86 (279)
T ss_pred HHHHHhhHhhcCCchhhHHHHHHHHHHHHHH------------------------------hhhhhcceEEEEEEEcCCC
Confidence 6777777789999999999999999999982 5778999999999999999
Q ss_pred CCeeceeeeeeeEEeeccc----hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeec
Q 006182 188 GAESNKVDEIMDISLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (658)
Q Consensus 188 ~~~S~~~E~f~~LsL~i~~----~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~ 263 (658)
+..+.+.|+|+.|+|+++. ..+|++||+.|+.+|.++|+++|.|++|++ +.++..|.++|++|+|||+||.++
T Consensus 87 ~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~ 163 (279)
T cd02667 87 GTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQP 163 (279)
T ss_pred CCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccC
Confidence 9999999999999998753 578999999999999999999999999987 889999999999999999999986
Q ss_pred cC---CccceeEecccccccchhcccC----CCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC----------------
Q 006182 264 FG---GKIDKAIAFEEVLVLSSFMCKA----SQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---------------- 320 (658)
Q Consensus 264 ~~---~Ki~~~V~fP~~LdL~~~~~~~----~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~---------------- 320 (658)
.. .|+++.|.||..|||.+|+... .......|+|+|||+|.|. .++|||+||+|..
T Consensus 164 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~ 242 (279)
T cd02667 164 RSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAA 242 (279)
T ss_pred cccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCC-CCCCEeEEEEEcCcccccccccccccccc
Confidence 43 7999999999999999998762 1235679999999999995 5999999999973
Q ss_pred ------CCcEEEEeCceeeecchhhhcCCCeEEEEEE
Q 006182 321 ------IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 321 ------~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~ 351 (658)
++.||+|||+.|++++.++|++..||||||+
T Consensus 243 ~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 243 DEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred ccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 5799999999999999999999999999995
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.8e-53 Score=452.84 Aligned_cols=295 Identities=29% Similarity=0.508 Sum_probs=250.1
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
++||.|+||||||||+||+|+++|+||++++....... .....++.+.++.++..+.........|..
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~------------~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~ 69 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED------------DDDNKSVPLALQRLFLFLQLSESPVKTTEL 69 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc------------CcccccHHHHHHHHHHHHHhCCccccCcch
Confidence 39999999999999999999999999999998632111 113456788899988888876655555554
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeC
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~ 185 (658)
+..+.......|..++||||+||+..|++.|+.++... ...++|.++|+|.+...++|.
T Consensus 70 ~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~---------------------~~~~~i~~lF~g~~~~~~~C~ 128 (334)
T cd02659 70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT---------------------GQEGLIKNLFGGKLVNYIICK 128 (334)
T ss_pred hheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC---------------------cccchhhhhCceEEEeEEEec
Confidence 43221212355778999999999999999999876421 123689999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc-
Q 006182 186 ACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF- 264 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~- 264 (658)
.|+..+...++|+.|+|++++..+|+++|+.|+.+|.+++.+.|.|++|++...+.++..|.++|++|+|||+||.++.
T Consensus 129 ~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~ 208 (334)
T cd02659 129 ECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFE 208 (334)
T ss_pred CCCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccc
Confidence 9999999999999999999998999999999999999999999999999999999999999999999999999999742
Q ss_pred ---CCccceeEecccccccchhcccCC----------CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCc
Q 006182 265 ---GGKIDKAIAFEEVLVLSSFMCKAS----------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDS 330 (658)
Q Consensus 265 ---~~Ki~~~V~fP~~LdL~~~~~~~~----------~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs 330 (658)
..|++..|.||..|||.+|+.... ......|+|+|||+|.| +.++|||+||+|.. ++.||+|||+
T Consensus 209 ~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~ 287 (334)
T cd02659 209 TMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDD 287 (334)
T ss_pred cCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCc
Confidence 368999999999999999987642 23567899999999999 68999999999984 7999999999
Q ss_pred eeeecchhhhc----------------------CCCeEEEEEEEcC
Q 006182 331 YVSVSTLQEVL----------------------SEKVYILFFIRAN 354 (658)
Q Consensus 331 ~Vt~v~~eev~----------------------s~~aYlLfY~R~~ 354 (658)
.|+++++++|+ +..||||||+|.+
T Consensus 288 ~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 288 VVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred ccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 99999999985 2469999999975
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.6e-53 Score=447.03 Aligned_cols=277 Identities=31% Similarity=0.423 Sum_probs=239.4
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCC----------
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD---------- 97 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~---------- 97 (658)
||.|+||||||||+||+|+++|+||++++.......+ .......++++++.+++..++...
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~---------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 71 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPS---------DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSE 71 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCC---------CcCCccccHHHHHHHHHHHhcCCCcCCCcccccc
Confidence 8999999999999999999999999999874332111 011245578899998888776543
Q ss_pred ----CCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccc
Q 006182 98 ----LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEI 173 (658)
Q Consensus 98 ----~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~l 173 (658)
...+.|..|..++....+.|..++||||+||+++||+.|++++... ....+.++
T Consensus 72 ~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~----------------------~~~~~~~~ 129 (311)
T cd02658 72 NDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN----------------------LGLNPNDL 129 (311)
T ss_pred ccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc----------------------ccCCchhh
Confidence 2368999999999999999999999999999999999999886411 12457899
Q ss_pred cccEEEEEEEeCCCCCeeceeeeeeeEEeeccch--------------hhHHHHHHhhccccccCCCCccccccCCccce
Q 006182 174 FGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 174 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~--------------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~ 239 (658)
|+|.+.+.++|..|+..+.+.|+|..|+|+++.. .+|+++|+.|+.+|.++ +.|++|++.+.
T Consensus 130 f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~ 205 (311)
T cd02658 130 FKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTT 205 (311)
T ss_pred eEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCccc
Confidence 9999999999999999999999999999999854 38999999999999998 68999999999
Q ss_pred eeEEEEEeeCCceeEEEEeeeeecc---CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEE
Q 006182 240 ARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAY 316 (658)
Q Consensus 240 a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvay 316 (658)
+.++.+|.++|++|+|||+||.++. ..|+...|.||..| ....|+|+|||+|.|.+.++|||++|
T Consensus 206 a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H~G~~~~~GHY~~~ 273 (311)
T cd02658 206 ATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISHKGTSVHSGHYVAH 273 (311)
T ss_pred EEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEccCCCCCCcceEEE
Confidence 9999999999999999999999832 35889999999877 24689999999999977999999999
Q ss_pred EEcC---CCcEEEEeCceeeecchhhhcCCCeEEEEEE
Q 006182 317 IKDA---IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 317 vr~~---~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~ 351 (658)
+|.. .++||+|||+.|++++..++...+||||||+
T Consensus 274 vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 274 IKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9995 3899999999999999999999999999995
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.1e-53 Score=444.96 Aligned_cols=283 Identities=26% Similarity=0.359 Sum_probs=244.4
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHHHH
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||++++........ ......++++++.+++..++... ..+.|..|+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~----------~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~ 69 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRG----------ANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFL 69 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccc----------cccchhHHHHHHHHHHHHHHhCC-CcCCcHHHH
Confidence 8999999999999999999999999999886643210 11133468889988888887765 489999999
Q ss_pred HHHHhhhhccC------CCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEE
Q 006182 108 SCLRIFAEHFK------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (658)
Q Consensus 108 ~~L~~l~~~F~------~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~ 181 (658)
..|....+.|. .++||||+||+..||+.|++++... ....+.|.++|+|++.+.
T Consensus 70 ~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--------------------~~~~~~i~~~F~g~~~~~ 129 (305)
T cd02657 70 QLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--------------------GSKGSFIDQLFGIELETK 129 (305)
T ss_pred HHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhccc--------------------CCCCcHHHHhhceEEEEE
Confidence 99998888884 4599999999999999999986421 123478999999999999
Q ss_pred EEeCCCC-CeeceeeeeeeEEeeccch---hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEE
Q 006182 182 VKCLACG-AESNKVDEIMDISLDILNS---CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQL 257 (658)
Q Consensus 182 i~C~~C~-~~S~~~E~f~~LsL~i~~~---~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~L 257 (658)
++|..|+ ..+.+.|+|+.|+++++.. .+|+++|+.++.++.. ..|+.|+....+.++..|.++|++|+|||
T Consensus 130 ~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~L 204 (305)
T cd02657 130 MKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQF 204 (305)
T ss_pred EEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEE
Confidence 9999999 7899999999999999875 6899999999876653 46899998888999999999999999999
Q ss_pred eeeeecc----CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC-CcEEEEeCcee
Q 006182 258 KRFEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYV 332 (658)
Q Consensus 258 kRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~-~~Wy~fNDs~V 332 (658)
+||.++. ..|+.+.|.||.+|||.+|+. ....|+|+|||+|.|.++++|||+||+|... +.||+|||+.|
T Consensus 205 kRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V 279 (305)
T cd02657 205 VRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKV 279 (305)
T ss_pred ECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCce
Confidence 9999743 258999999999999999986 3469999999999997789999999999965 89999999999
Q ss_pred eecchhhhcC-------CCeEEEEEE
Q 006182 333 SVSTLQEVLS-------EKVYILFFI 351 (658)
Q Consensus 333 t~v~~eev~s-------~~aYlLfY~ 351 (658)
++++.++|.. ..||||||+
T Consensus 280 ~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 280 SEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999974 589999996
No 12
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-50 Score=445.71 Aligned_cols=293 Identities=21% Similarity=0.324 Sum_probs=237.4
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCC--CCccCh
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD--LTLDAP 103 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~i~p 103 (658)
++||.|+||||||||+||+|+++|+||++++........ . ....++.+++..++..++... ...++|
T Consensus 119 ~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~-----~------~~~~~l~~~l~~l~~kl~~~~~~~~~isP 187 (440)
T cd02669 119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI-----K------DRKSELVKRLSELIRKIWNPRNFKGHVSP 187 (440)
T ss_pred ccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc-----c------CCCcHHHHHHHHHHHHHhccccCCCccCH
Confidence 399999999999999999999999999999976542111 0 123357788888888888654 368999
Q ss_pred HHHHHHHHhhh-hccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEE
Q 006182 104 AKIQSCLRIFA-EHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182 (658)
Q Consensus 104 ~~l~~~L~~l~-~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i 182 (658)
..|+.++.... +.|..++||||+|||.+||+.|+.++.... ....++|+++|+|++.+.+
T Consensus 188 ~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-------------------~~~~~ii~~~F~G~l~~~~ 248 (440)
T cd02669 188 HELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-------------------KPNSSIIHDCFQGKVQIET 248 (440)
T ss_pred HHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-------------------CCCCCcceeccCceEEEEE
Confidence 99999998754 578899999999999999999999865321 1245899999999999999
Q ss_pred EeCCCC---------------CeeceeeeeeeEEeeccchhhHHH-----HHHhhccccccCCCCccccccCCccceeeE
Q 006182 183 KCLACG---------------AESNKVDEIMDISLDILNSCSLKE-----AMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242 (658)
Q Consensus 183 ~C~~C~---------------~~S~~~E~f~~LsL~i~~~~sLed-----~L~~~~~~E~Leg~nky~C~kC~~~~~a~K 242 (658)
+|..|. ..+.+.++|++|+|+|+....+.+ ++..+...|.++ +|.|+.|.....+.|
T Consensus 249 ~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k 325 (440)
T cd02669 249 QKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLK 325 (440)
T ss_pred EeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceE
Confidence 987654 245678999999999987532222 222222233343 378889988889999
Q ss_pred EEEEeeCCceeEEEEeeeeecc--CCccceeEecccc-cccchhcccCC--CCCCCcEEEEEEEEeecCCCCCCeEEEEE
Q 006182 243 QMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEV-LVLSSFMCKAS--QDPQPEYKLFGTIVHSGFSPDSGHYYAYI 317 (658)
Q Consensus 243 ~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~~-LdL~~~~~~~~--~~~~~~Y~L~aVIvH~G~s~~sGHYvayv 317 (658)
+.+|.++|+||+||||||.+.. ..|+.+.|.||.. |||.+|+.... ......|+|+|||+|.|..+++|||+||+
T Consensus 326 ~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v 405 (440)
T cd02669 326 RYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQL 405 (440)
T ss_pred EEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEE
Confidence 9999999999999999999843 3699999999986 89999987432 23568999999999999544999999999
Q ss_pred Ec-CCCcEEEEeCceeeecchhhhcCCCeEEEEEE
Q 006182 318 KD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 318 r~-~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~ 351 (658)
|+ ..++||+|||+.|+++++++|...+||||||+
T Consensus 406 ~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 406 RHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 98 47899999999999999999999999999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=435.51 Aligned_cols=324 Identities=29% Similarity=0.512 Sum_probs=275.4
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCcc
Q 006182 22 RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLD 101 (658)
Q Consensus 22 ~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i 101 (658)
..|. +||.|+||||||||.||||.|++++|+|++.-.+.... +.. ++..-.......+..++.+++......+
T Consensus 262 e~Gt-cGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~i---Ne~---Nplgmhg~vAsayadLik~ly~~~~haf 334 (823)
T COG5560 262 EAGT-CGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESI---NEE---NPLGMHGSVASAYADLIKQLYDGNLHAF 334 (823)
T ss_pred hccc-cceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhh---ccc---CccchhhhHHHHHHHHHHHHhCcccccc
Confidence 3565 89999999999999999999999999999987665432 112 1333444455566677777777777999
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCC-----------CCCcccCCCCcc
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG-----------GGETINGGSSVV 170 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~siI 170 (658)
.|..|...|+.++..|.++.|||.+||+.+|||.||+.++++.+..+.....-.++. |+.....+.++|
T Consensus 335 ~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiI 414 (823)
T COG5560 335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSII 414 (823)
T ss_pred ChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999999987764433322211111 222356788999
Q ss_pred ccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch-------------------------------------------
Q 006182 171 KEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS------------------------------------------- 207 (658)
Q Consensus 171 ~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~------------------------------------------- 207 (658)
.++|.|...+++.|+.|+.++.+++||++|+||+|-.
T Consensus 415 tdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk~ 494 (823)
T COG5560 415 TDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGKL 494 (823)
T ss_pred HHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999720
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 495 gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~i 574 (823)
T COG5560 495 GCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKASI 574 (823)
T ss_pred CccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 575 ~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y~ 654 (823)
T COG5560 575 YDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRYL 654 (823)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccchh
Confidence
Q ss_pred --------------------hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeee--ccC
Q 006182 208 --------------------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFG 265 (658)
Q Consensus 208 --------------------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~--~~~ 265 (658)
.+|++||..|.++|.+...+.|+|+.|+....+.|++.|+++|.||+||||||+. .+.
T Consensus 655 ~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfr 734 (823)
T COG5560 655 SLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFR 734 (823)
T ss_pred hhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccch
Confidence 1799999999999999998899999999999999999999999999999999997 445
Q ss_pred CccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCceeeecchhhhcCC
Q 006182 266 GKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSE 343 (658)
Q Consensus 266 ~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~v~~eev~s~ 343 (658)
.|+.+-|+|| ..|||+.+...- +++.-.|+|+||=.|+| ...+|||+||+|+. +++||+|||++|+++.+++.+.+
T Consensus 735 dKiddlVeyPiddldLs~~~~~~-~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vts 812 (823)
T COG5560 735 DKIDDLVEYPIDDLDLSGVEYMV-DDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTS 812 (823)
T ss_pred hhhhhhhccccccccccceEEee-cCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccc
Confidence 7999999999 779998876654 23448899999999999 69999999999995 57999999999999999999999
Q ss_pred CeEEEEEEEcC
Q 006182 344 KVYILFFIRAN 354 (658)
Q Consensus 344 ~aYlLfY~R~~ 354 (658)
.||+|||+|+.
T Consensus 813 saYvLFyrrk~ 823 (823)
T COG5560 813 SAYVLFYRRKS 823 (823)
T ss_pred eeEEEEEEecC
Confidence 99999999973
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-48 Score=389.66 Aligned_cols=330 Identities=25% Similarity=0.379 Sum_probs=247.7
Q ss_pred cccccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccC-ChHHHHHHHHHHHh
Q 006182 16 LSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRE-CPFCILEKRIVRSL 94 (658)
Q Consensus 16 ~~~~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~l~~l~ 94 (658)
....+++..+|+||.|.|||||||++||||+.+..+..++........ ++.+. +..... ..+..+..+...+.
T Consensus 61 ~~s~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~---INtd~---prg~~g~~~~k~F~~l~~~~~ 134 (415)
T COG5533 61 VVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQN---INTDF---PRGKPGSNAFKQFIALYETPG 134 (415)
T ss_pred hhhhhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhh---ccCCC---CCCCcchhHHHHHHHHHhccc
Confidence 345677788999999999999999999999999999886654333211 11111 222222 22333333333344
Q ss_pred cCCCCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--------------CCCC
Q 006182 95 SVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGG--------------GGGG 160 (658)
Q Consensus 95 ~~~~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~--------------~~~~ 160 (658)
......++|..|+..+..+++.|...+|||+|||+.++||.||++++......+........ -.|.
T Consensus 135 ~Hg~~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn 214 (415)
T COG5533 135 CHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWN 214 (415)
T ss_pred cCCCcccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhH
Confidence 44457899999999999999999999999999999999999999987554322111100000 0011
Q ss_pred CcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccc--hhhHHHHHHhhccccccCCCCccccccCCccc
Q 006182 161 ETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLV 238 (658)
Q Consensus 161 ~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~ 238 (658)
-...++.+.|.+.|.|+..++++|..|+++|++..+|..|.++++. ...|++||++|.++|.++|.+.|+|++|+.++
T Consensus 215 ~~L~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ 294 (415)
T COG5533 215 LHLRSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKE 294 (415)
T ss_pred HhhccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccc
Confidence 1255667899999999999999999999999999999999999987 35699999999999999999999999999999
Q ss_pred eeeEEEEEeeCCceeEEEEeeeee--ccCCccceeE----ecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCe
Q 006182 239 SARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAI----AFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGH 312 (658)
Q Consensus 239 ~a~K~~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V----~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGH 312 (658)
.++|++.|..+|++||||++||.. ....|++.+- .+|-+....+.+.....-.+.+|.|+|||||.| +.++||
T Consensus 295 ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gGH 373 (415)
T COG5533 295 SSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGGH 373 (415)
T ss_pred cchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc-eecCce
Confidence 999999999999999999999984 1223333331 122222222222222222457999999999999 799999
Q ss_pred EEEEEEcCCCcEEEEeCceeeecchhh-hcCCCeEEEEEEEc
Q 006182 313 YYAYIKDAIGRWYCCNDSYVSVSTLQE-VLSEKVYILFFIRA 353 (658)
Q Consensus 313 Yvayvr~~~~~Wy~fNDs~Vt~v~~ee-v~s~~aYlLfY~R~ 353 (658)
|+++|+. ++.|+.|||+.|++++... .....+|+|||+|.
T Consensus 374 Y~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 374 YFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 9999999 6999999999999997543 33457999999986
No 15
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-47 Score=392.41 Aligned_cols=209 Identities=35% Similarity=0.635 Sum_probs=190.2
Q ss_pred ccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHHHH
Q 006182 28 GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQ 107 (658)
Q Consensus 28 GL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~l~ 107 (658)
||.|+||||||||+||+|+++|+||+++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999876411
Q ss_pred HHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCC
Q 006182 108 SCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLAC 187 (658)
Q Consensus 108 ~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C 187 (658)
+||||+|||..||+.|+. .+.++|.|.+.+.++|..|
T Consensus 33 -------------~QqDa~EFl~~ll~~l~~------------------------------~i~~~F~g~~~~~i~C~~C 69 (240)
T cd02662 33 -------------EQQDAHELFQVLLETLEQ------------------------------LLKFPFDGLLASRIVCLQC 69 (240)
T ss_pred -------------hhcCHHHHHHHHHHHHHH------------------------------hccCccccEEEEEEEeCCC
Confidence 799999999999999993 3668899999999999999
Q ss_pred CCeec-eeeeeeeEEeeccch-----hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeee
Q 006182 188 GAESN-KVDEIMDISLDILNS-----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFE 261 (658)
Q Consensus 188 ~~~S~-~~E~f~~LsL~i~~~-----~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~ 261 (658)
+..+. +.|+|+.|+|+++.. .+|+++|+.|+.+|.+++ |.|++| +..|.++|++|+|||+||.
T Consensus 70 ~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~ 138 (240)
T cd02662 70 GESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSV 138 (240)
T ss_pred CCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEE
Confidence 99876 499999999999975 599999999999999987 899999 5679999999999999999
Q ss_pred ecc---CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC------------------
Q 006182 262 GIF---GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA------------------ 320 (658)
Q Consensus 262 ~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~------------------ 320 (658)
++. ..|+++.|.||..| ....|+|+|||+|.|. ..+|||+||+|.+
T Consensus 139 ~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~ 205 (240)
T cd02662 139 FDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGP 205 (240)
T ss_pred EcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEEEEEeCCCccccccccccccccccc
Confidence 854 26999999999988 3578999999999995 6999999999985
Q ss_pred ---CCcEEEEeCceeeecchhhh-cCCCeEEEEEE
Q 006182 321 ---IGRWYCCNDSYVSVSTLQEV-LSEKVYILFFI 351 (658)
Q Consensus 321 ---~~~Wy~fNDs~Vt~v~~eev-~s~~aYlLfY~ 351 (658)
.+.||+|||+.|+++++++| .+.+||||||+
T Consensus 206 ~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 206 SSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 38999999999999999999 88999999995
No 16
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-48 Score=420.09 Aligned_cols=312 Identities=29% Similarity=0.467 Sum_probs=268.7
Q ss_pred cccCCCccccccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHH
Q 006182 9 MSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK 88 (658)
Q Consensus 9 ~sW~~~~~~~~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 88 (658)
.=|+...++.+++.+|+ |||+|+|.||||||+||.|+.+..||+.+..++... ++.......+|++
T Consensus 177 VLWHsF~nYnSKkeTGY-VGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~-------------p~grdSValaLQr 242 (1089)
T COG5077 177 VLWHSFLNYNSKKETGY-VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH-------------PRGRDSVALALQR 242 (1089)
T ss_pred ceeecccccccccceee-eeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC-------------CCccchHHHHHHH
Confidence 34888888899999998 999999999999999999999999999998876421 1233445678999
Q ss_pred HHHHHhcCCCCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCC
Q 006182 89 RIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSS 168 (658)
Q Consensus 89 ~l~~l~~~~~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s 168 (658)
.|.+++... .++++.+|...++ +..+...+|||.|||.+.|+|.|+...... .-..
T Consensus 243 ~Fynlq~~~-~PvdTteltrsfg--Wds~dsf~QHDiqEfnrVl~DnLEksmrgt---------------------~VEn 298 (1089)
T COG5077 243 LFYNLQTGE-EPVDTTELTRSFG--WDSDDSFMQHDIQEFNRVLQDNLEKSMRGT---------------------VVEN 298 (1089)
T ss_pred HHHHHhccC-CCcchHHhhhhcC--cccchHHHHHhHHHHHHHHHHHHHHhhcCC---------------------hhhh
Confidence 999988776 6777777766543 333444589999999999999999854321 1235
Q ss_pred ccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEee
Q 006182 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (658)
Q Consensus 169 iI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~ 248 (658)
-+..+|-|.+.+.+.|.+-.+++.+.|.|+++.|++++..+|++++++|...|+++|+|+|.|++-| .+.|.|..-|.+
T Consensus 299 aln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeS 377 (1089)
T COG5077 299 ALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFES 377 (1089)
T ss_pred HHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeecc
Confidence 6889999999999999999999999999999999999999999999999999999999999999976 588999999999
Q ss_pred CCceeEEEEeeeeecc----CCccceeEecccccccchhcccCC---CCCCCcEEEEEEEEeecCCCCCCeEEEEEEc-C
Q 006182 249 SPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS---QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-A 320 (658)
Q Consensus 249 lP~iLiI~LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~---~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-~ 320 (658)
+|+||.||||||++++ ..|++++++||.++||.+|++.+. ++.++.|.|+||++|.| ..+.|||||++|. .
T Consensus 378 lPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~ 456 (1089)
T COG5077 378 LPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEK 456 (1089)
T ss_pred CchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEecc-ccCCceEEEEecccc
Confidence 9999999999999854 369999999999999999998764 34558999999999999 6999999999997 5
Q ss_pred CCcEEEEeCceeeecchhhhcC----------------------CCeEEEEEEEcCCCCCCC
Q 006182 321 IGRWYCCNDSYVSVSTLQEVLS----------------------EKVYILFFIRANQRPVSA 360 (658)
Q Consensus 321 ~~~Wy~fNDs~Vt~v~~eev~s----------------------~~aYlLfY~R~~~~~~~~ 360 (658)
+|+||+|||++|+.++..+|+. -.||||+|-|++......
T Consensus 457 dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ddLl 518 (1089)
T COG5077 457 DGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLDDLL 518 (1089)
T ss_pred CCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHHhhh
Confidence 7999999999999999999883 268999999998755443
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-45 Score=371.15 Aligned_cols=200 Identities=35% Similarity=0.639 Sum_probs=183.6
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeE
Q 006182 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~L 200 (658)
+||||+||+.+||+.|+ +.+.++|+|.+...++|..|+..+.+.|+|+.|
T Consensus 21 ~QqDa~Ef~~~ll~~l~------------------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l 70 (230)
T cd02674 21 DQQDAQEFLLFLLDGLH------------------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYL 70 (230)
T ss_pred hhhhHHHHHHHHHHHHh------------------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEE
Confidence 79999999999999998 147789999999999999999999999999999
Q ss_pred Eeeccchh------hHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeec--cCCccceeE
Q 006182 201 SLDILNSC------SLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI--FGGKIDKAI 272 (658)
Q Consensus 201 sL~i~~~~------sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~--~~~Ki~~~V 272 (658)
+|+++... +|+++|+.++.+|.+++.+++.|++|++...+.++..|.++|++|+|+|+||.++ ...|++..|
T Consensus 71 ~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v 150 (230)
T cd02674 71 SLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPV 150 (230)
T ss_pred EEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceE
Confidence 99998744 9999999999999999999999999999999999999999999999999999985 357999999
Q ss_pred ecc-cccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC-CcEEEEeCceeeecchhhhcCCCeEEEEE
Q 006182 273 AFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFF 350 (658)
Q Consensus 273 ~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY 350 (658)
.|| +.|++.+|+.........+|+|+|||+|.|. ..+|||+||+|... ++||+|||+.|++++.+++...+||||||
T Consensus 151 ~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y 229 (230)
T cd02674 151 TFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229 (230)
T ss_pred eccccccccccccCcccCCCCceEEEEEEEEeeCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEe
Confidence 999 4689998865555566789999999999995 49999999999954 89999999999999999998999999999
Q ss_pred E
Q 006182 351 I 351 (658)
Q Consensus 351 ~ 351 (658)
+
T Consensus 230 ~ 230 (230)
T cd02674 230 E 230 (230)
T ss_pred C
Confidence 6
No 18
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-46 Score=404.22 Aligned_cols=318 Identities=27% Similarity=0.498 Sum_probs=272.2
Q ss_pred cccCCCccccccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHH
Q 006182 9 MSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK 88 (658)
Q Consensus 9 ~sW~~~~~~~~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 88 (658)
..|.-.++-.+|+..|. |||+|-|+|||||+++|-|+++|-+|..+..........+. ......+|+++.
T Consensus 79 yE~~YlppVgsRpp~gf-VGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~---------s~~e~vl~~lQ~ 148 (944)
T KOG1866|consen 79 YEWEYLPPVGSRPPEGF-VGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDM---------SGDEKVLRHLQV 148 (944)
T ss_pred cCcccCCCcCCCCCcce-eeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhh---------cchHHHHHHHHH
Confidence 45664455444566666 99999999999999999999999999988776654111111 112228999999
Q ss_pred HHHHHhcCCCCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCC
Q 006182 89 RIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSS 168 (658)
Q Consensus 89 ~l~~l~~~~~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s 168 (658)
+|..+..+...++-|..|=+.++.........+||||-|||..|+|.+++.+.... .+.
T Consensus 149 iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg---------------------~p~ 207 (944)
T KOG1866|consen 149 IFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG---------------------HPQ 207 (944)
T ss_pred HHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC---------------------CcH
Confidence 99999999989999999999888877777888999999999999999999876543 235
Q ss_pred ccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEee
Q 006182 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (658)
Q Consensus 169 iI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~ 248 (658)
++...|+|....+-.|..|.+.....|.|+.|+|+|. ..+|+++|+.|++.|+++|.|.|+|++|.++....|++.|++
T Consensus 208 lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~ 286 (944)
T KOG1866|consen 208 LFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKK 286 (944)
T ss_pred HHHHHhcCccchhhhhccCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhh
Confidence 7889999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred CCceeEEEEeeeeeccC----CccceeEecccccccchhcccCC----------------CCCCCcEEEEEEEEeecCCC
Q 006182 249 SPNILVIQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKAS----------------QDPQPEYKLFGTIVHSGFSP 308 (658)
Q Consensus 249 lP~iLiI~LkRF~~~~~----~Ki~~~V~fP~~LdL~~~~~~~~----------------~~~~~~Y~L~aVIvH~G~s~ 308 (658)
||++|+|||+||.|++. .|-++.+.||.+|||.+|+..+. .....+|+|+||++|+| .+
T Consensus 287 LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-qA 365 (944)
T KOG1866|consen 287 LPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-QA 365 (944)
T ss_pred CChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-cc
Confidence 99999999999999653 59999999999999999976532 12456899999999999 69
Q ss_pred CCCeEEEEEEcC----CCcEEEEeCceeeecchhhhcC--------------------CCeEEEEEEEcCCCCCC
Q 006182 309 DSGHYYAYIKDA----IGRWYCCNDSYVSVSTLQEVLS--------------------EKVYILFFIRANQRPVS 359 (658)
Q Consensus 309 ~sGHYvayvr~~----~~~Wy~fNDs~Vt~v~~eev~s--------------------~~aYlLfY~R~~~~~~~ 359 (658)
++||||+||++. .++||+|||..|++.+..++-. =+||||||+|.+..|..
T Consensus 366 saGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~ 440 (944)
T KOG1866|consen 366 SAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTD 440 (944)
T ss_pred cCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcc
Confidence 999999999872 4799999999999998665432 17999999999988755
No 19
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.6e-42 Score=353.89 Aligned_cols=256 Identities=36% Similarity=0.606 Sum_probs=203.2
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC--CCCccCh
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV--DLTLDAP 103 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~--~~~~i~p 103 (658)
|+||.|.||||||||+||+|+++|+||++|+........ ..........++++.+..++..++.. ....+.|
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~ 74 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKEN------NESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISP 74 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHH------HCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHC
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhh------ccccccccccchhhhhhhhhhhhhhhcccccceee
Confidence 699999999999999999999999999999976221111 00011223445889999999999987 5588999
Q ss_pred HHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEE
Q 006182 104 AKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVK 183 (658)
Q Consensus 104 ~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~ 183 (658)
..+..++....+.|..+.||||+|||..|++.|+.++........ .........+++.++|.+.+...+.
T Consensus 75 ~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~f~~~~~~~~~ 144 (269)
T PF00443_consen 75 SDFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKS----------WKNTNSSEDSLISDLFGGQFESSIK 144 (269)
T ss_dssp HHHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHH----------HHHHHCCEESHHHHHH-EEEEEEEE
T ss_pred ccccccccccccccccccccchhhhhcccccccchhhcccccccc----------ccccccccccccccccccccccccc
Confidence 999999999988899999999999999999999998754221000 0001123457899999999999999
Q ss_pred eCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeec
Q 006182 184 CLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI 263 (658)
Q Consensus 184 C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~ 263 (658)
|..|+.. ...|.++|++|+|+|+||.+.
T Consensus 145 c~~c~~~----------------------------------------------------~~~~~~~P~~L~i~l~R~~~~ 172 (269)
T PF00443_consen 145 CSSCKNS----------------------------------------------------QSSISSLPPILIIQLKRFEFD 172 (269)
T ss_dssp ETTTTCE----------------------------------------------------EEEEEEBBSEEEEEEE-EEEE
T ss_pred ccccccc----------------------------------------------------ccccccccceeeeccccceec
Confidence 9999987 456999999999999999763
Q ss_pred c----CCccceeEecc-cccccchhcccCCCC--CCCcEEEEEEEEeecCCCCCCeEEEEEEcCC-CcEEEEeCceeeec
Q 006182 264 F----GGKIDKAIAFE-EVLVLSSFMCKASQD--PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVS 335 (658)
Q Consensus 264 ~----~~Ki~~~V~fP-~~LdL~~~~~~~~~~--~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~v 335 (658)
. ..|+...|.|| ++|||.+++...... ....|+|+|||+|.| +..+|||+||+|+.. ++|++|||++|+++
T Consensus 173 ~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~ 251 (269)
T PF00443_consen 173 QETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEV 251 (269)
T ss_dssp STSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred cccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEEC
Confidence 2 36999999999 799999998765422 467999999999999 899999999999854 46999999999999
Q ss_pred chhhhcC---CCeEEEEE
Q 006182 336 TLQEVLS---EKVYILFF 350 (658)
Q Consensus 336 ~~eev~s---~~aYlLfY 350 (658)
++++|.. .+||||||
T Consensus 252 ~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 252 SWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp SHHHHCCGGSTCEEEEEE
T ss_pred CHHHHhhccCCceEEEeC
Confidence 9999988 89999999
No 20
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-43 Score=377.57 Aligned_cols=285 Identities=22% Similarity=0.345 Sum_probs=220.6
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchh--------hhccCCCchh-hhhccCChHHHHHHHHHHHhcC
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLC--------KQLTGDSALD-AERKRECPFCILEKRIVRSLSV 96 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~--------~~l~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~ 96 (658)
|+||.|+||||||||+||+|+++|+||++++.+...... ....+..... ......++++++..+|..|..+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999987632110 0000010000 0011225788999999999988
Q ss_pred CCCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcccccccc
Q 006182 97 DLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 97 ~~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
....+.|..++..+.. .||||+||+..||+.|+.++...... ..+ ..........++|.++|.|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~------~~~--~~~~~~~~~~~~I~~lF~G 144 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNA------FAG--PDTEDDKEQSDLIKRLFSG 144 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCcccc------ccC--cccccccchhhhhhHhcee
Confidence 8889999999877652 89999999999999999987532210 000 0011112446899999999
Q ss_pred EEEEEEEeCCCC---CeeceeeeeeeEEeeccc----------hhhHHHHHHhhccccccCCCCccccccCCccceeeEE
Q 006182 177 ALQSQVKCLACG---AESNKVDEIMDISLDILN----------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQ 243 (658)
Q Consensus 177 ~l~s~i~C~~C~---~~S~~~E~f~~LsL~i~~----------~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~ 243 (658)
++.+.++|..|+ ..+.+.|+|++|+++|.. ..+|+++|+.|+..|.
T Consensus 145 ~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~--------------------- 203 (343)
T cd02666 145 KTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS--------------------- 203 (343)
T ss_pred eEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh---------------------
Confidence 999999999997 678899999999999984 6899999999998765
Q ss_pred EEEeeCCceeEEEEeeeee--ccCCccceeEecccccccchhcccCC---------------------------CCCCCc
Q 006182 244 MSILQSPNILVIQLKRFEG--IFGGKIDKAIAFEEVLVLSSFMCKAS---------------------------QDPQPE 294 (658)
Q Consensus 244 ~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V~fP~~LdL~~~~~~~~---------------------------~~~~~~ 294 (658)
|.++|++|.|||+ +.+ ....+..++++||...+..+++.... +.....
T Consensus 204 --~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 280 (343)
T cd02666 204 --LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYG 280 (343)
T ss_pred --hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 8899999999999 333 22356777888887777766654311 125778
Q ss_pred EEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCceeeecchhhhcC------CCeEEEEEE
Q 006182 295 YKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS------EKVYILFFI 351 (658)
Q Consensus 295 Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~v~~eev~s------~~aYlLfY~ 351 (658)
|+|+|||+|.| +.++|||++|+|+. .+.||+|||+.|++++.++++. .+||||+|+
T Consensus 281 Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 281 YRLHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred eEEEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 99999999999 56999999999984 4899999999999999998874 589999995
No 21
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=398.98 Aligned_cols=327 Identities=30% Similarity=0.456 Sum_probs=260.5
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC-CCCc
Q 006182 22 RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-DLTL 100 (658)
Q Consensus 22 ~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~ 100 (658)
....++||.|+|||||||++||||+.++.||..++......... .+.......+.......+...+.. ....
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~-------~~~~~~~~~l~~~~~~~l~~~~~~~~~~s 369 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN-------LDLFFGAEELESACAKLLQKLWHGHGQFS 369 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc-------cCCcccchhHHHHHHHhhhhhccCCCcee
Confidence 33445999999999999999999999999998777765543321 001112223455556666666655 4477
Q ss_pred cChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhh---hccCCCC-------CCCC----CCCCCcccCC
Q 006182 101 DAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKK---LRRKGGG-------SSGG----GGGGETINGG 166 (658)
Q Consensus 101 i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~---~~~~~~~-------~~~~----~~~~~~~~~~ 166 (658)
+.|+.|+..+..+.+.|.++.|||+|||+.++++.||++++.... ..+...+ .... ..|.......
T Consensus 370 ~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~ 449 (653)
T KOG1868|consen 370 VLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEE 449 (653)
T ss_pred cCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhcccc
Confidence 899999999999999999989999999999999999999987543 1111111 0000 0111223334
Q ss_pred CCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccc------hhhHHHHHHhhccccccCCCCccccccCCcccee
Q 006182 167 SSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSA 240 (658)
Q Consensus 167 ~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a 240 (658)
.+.|.++|.|++.+.++|..|++.+.+++.|++++|+|+. ..+|++|+..|+..|.+++++.|.|++|+.....
T Consensus 450 d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~ 529 (653)
T KOG1868|consen 450 DSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESS 529 (653)
T ss_pred chHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccc
Confidence 5559999999999999999999999999999999999986 2459999999999999999999999999999998
Q ss_pred e--EEEEEeeCCceeEEEEeeeeec--cCCccceeEeccc-ccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEE
Q 006182 241 R--KQMSILQSPNILVIQLKRFEGI--FGGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYA 315 (658)
Q Consensus 241 ~--K~~~I~~lP~iLiI~LkRF~~~--~~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYva 315 (658)
. |+..|.++|++|+|||+||..+ ...|....|+||. ..++.++..... +....|+|+|||+|.| +.++|||+|
T Consensus 530 ~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~-~~~~~Y~L~aVv~H~G-tl~sGHYta 607 (653)
T KOG1868|consen 530 KTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKG-NNPKSYRLYAVVNHSG-TLNSGHYTA 607 (653)
T ss_pred cccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccC-CCccceeeEEEEeccC-cccCCceEE
Confidence 6 9999999999999999999986 5578888899985 455665444333 3445699999999999 899999999
Q ss_pred EEEc-CCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCCCC
Q 006182 316 YIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRP 357 (658)
Q Consensus 316 yvr~-~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~~~ 357 (658)
|++. ..+.|+.|||+.|+.+...++....||||||.|....+
T Consensus 608 ~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~ 650 (653)
T KOG1868|consen 608 YVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFE 650 (653)
T ss_pred EEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCccc
Confidence 9987 46889999999999999999988999999999987654
No 22
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-42 Score=373.45 Aligned_cols=312 Identities=29% Similarity=0.428 Sum_probs=257.2
Q ss_pred ccccccccCCCccccccC----CCCC-CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhc
Q 006182 4 AHELQMSWQPSLLSEKRK----RGGP-PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERK 78 (658)
Q Consensus 4 ~~~~~~sW~~~~~~~~r~----~~g~-pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~ 78 (658)
+..++-.|.+....+.+. ..|+ ++||.|+||+||||||+|+|+.+|.|...++.......+ .+..+
T Consensus 280 el~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~---------~~~~P 350 (763)
T KOG0944|consen 280 ELDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNC---------YPKDP 350 (763)
T ss_pred HHHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeec---------CCCCc
Confidence 345556777665544433 2333 399999999999999999999999999887766222112 23346
Q ss_pred cCChHHHHHHHHHHHhcCCC----------CccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhcc
Q 006182 79 RECPFCILEKRIVRSLSVDL----------TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRR 148 (658)
Q Consensus 79 ~~~~~~~l~~~l~~l~~~~~----------~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~ 148 (658)
..++.|++.+++..|..... .-|.|..|...+++-.+.|+..+||||+|||.+||+.|.+-..
T Consensus 351 ~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~r------- 423 (763)
T KOG0944|consen 351 TNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSR------- 423 (763)
T ss_pred chhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccc-------
Confidence 67899999999999887643 3589999999999999999999999999999999999986421
Q ss_pred CCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch------hhHHHHHHhhccccc
Q 006182 149 KGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS------CSLKEAMQKFFQPEV 222 (658)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~------~sLed~L~~~~~~E~ 222 (658)
+....+.++|...+..++.|..|..++++.+.-+.|+|+++.. ..+.+||+.||.+.+
T Consensus 424 ----------------s~~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~ 487 (763)
T KOG0944|consen 424 ----------------SSLPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQV 487 (763)
T ss_pred ----------------ccCCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcc
Confidence 1115688999999999999999999999999999999999853 489999999999944
Q ss_pred cCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeee-cc-CCccceeEecccccccchhcccCCC-----------
Q 006182 223 LDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG-IF-GGKIDKAIAFEEVLVLSSFMCKASQ----------- 289 (658)
Q Consensus 223 Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~-~~-~~Ki~~~V~fP~~LdL~~~~~~~~~----------- 289 (658)
.+ |.|..|+.+..+.|..+|.++|++|+||+.||.+ ++ .+|+...+++|+.||++.|...+.+
T Consensus 488 ~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~ 563 (763)
T KOG0944|consen 488 DD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAP 563 (763)
T ss_pred hh----hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCc
Confidence 44 9999999999999999999999999999999998 22 3799999999999999999876510
Q ss_pred --------------------------------------------------------------------------------
Q 006182 290 -------------------------------------------------------------------------------- 289 (658)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (658)
T Consensus 564 ~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~ 643 (763)
T KOG0944|consen 564 ETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIV 643 (763)
T ss_pred ccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeee
Confidence
Q ss_pred ----------------------------------------------------------CCCCcEEEEEEEEeecCCCCCC
Q 006182 290 ----------------------------------------------------------DPQPEYKLFGTIVHSGFSPDSG 311 (658)
Q Consensus 290 ----------------------------------------------------------~~~~~Y~L~aVIvH~G~s~~sG 311 (658)
+...+|.|+|+|+|.|.+..+|
T Consensus 644 smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sG 723 (763)
T KOG0944|consen 644 SMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSG 723 (763)
T ss_pred eecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCc
Confidence 0345899999999999999999
Q ss_pred eEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcC
Q 006182 312 HYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 312 HYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~ 354 (658)
||+|++|. .|+|+.|||++|-. .++-....+||+||+|..
T Consensus 724 HYV~hirK-egkWVlfNDeKv~~--S~~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 724 HYVCHIRK-EGKWVLFNDEKVAA--SQEPPKDLGYVYLYTRIA 763 (763)
T ss_pred ceEEEEee-cCcEEEEcchhhhh--ccCChhhcceEEEEEecC
Confidence 99999999 58899999999972 233336789999999963
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.8e-42 Score=345.54 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=164.3
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeE
Q 006182 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~L 200 (658)
.||||+||+..||+.|+.++....... .......++|.++|.|++.+++.| |+..+.+.|+|++|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~-------------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L 85 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAI-------------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQY 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc-------------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEE
Confidence 599999999999999999875321100 001134578999999999987777 78888999999999
Q ss_pred EeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc--CCccceeEeccccc
Q 006182 201 SLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEEVL 278 (658)
Q Consensus 201 sL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~~L 278 (658)
+|+|.+..+|++||+.++.+|.+++++.++ ...+.++..|.++|+||+|||+||.++. ..|+++.|.||..|
T Consensus 86 ~l~i~~~~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 86 PLQVNGYGNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQII 159 (228)
T ss_pred EEEECCCCCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCcc
Confidence 999999999999999999998998754322 2334566679999999999999999854 47999999999887
Q ss_pred ccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCceeeecchhhhcC--------CCeEEEE
Q 006182 279 VLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSVSTLQEVLS--------EKVYILF 349 (658)
Q Consensus 279 dL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs~Vt~v~~eev~s--------~~aYlLf 349 (658)
....|+|+|||+|.| ++++|||++|+|+. .+.||+|||+.|+++++++|.. ..|||||
T Consensus 160 ------------~~~~Y~L~aVi~H~G-~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLf 226 (228)
T cd02665 160 ------------QQVPYELHAVLVHEG-QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLM 226 (228)
T ss_pred ------------CCceeEEEEEEEecC-CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEE
Confidence 235899999999999 58999999999974 7899999999999999999873 4799999
Q ss_pred EE
Q 006182 350 FI 351 (658)
Q Consensus 350 Y~ 351 (658)
|.
T Consensus 227 Yv 228 (228)
T cd02665 227 YI 228 (228)
T ss_pred EC
Confidence 95
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-41 Score=343.58 Aligned_cols=214 Identities=23% Similarity=0.343 Sum_probs=170.6
Q ss_pred hhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeece
Q 006182 114 AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNK 193 (658)
Q Consensus 114 ~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~ 193 (658)
.+.|..++||||||||++||+.|++++.......+.... ........++|+|.+.+.++|..|+.++.+
T Consensus 25 ~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~ 93 (245)
T cd02673 25 NTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI-----------EIKRLNPLEAFKYTIESSYVCIGCSFEENV 93 (245)
T ss_pred hhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcc-----------cccccCHhHheeeEEEeEEEecCCCCeeee
Confidence 456888999999999999999999877543221100000 001123457899999999999999999999
Q ss_pred eeeeeeEEeeccc--hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeeccCCcccee
Q 006182 194 VDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKA 271 (658)
Q Consensus 194 ~E~f~~LsL~i~~--~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~~Ki~~~ 271 (658)
.|+|++|+|+++. ...+++++..+...+.++ |.|++|+.. .+.++.+|.++|+||+|||+||.+.. +....
T Consensus 94 ~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~--~~~~~ 166 (245)
T cd02673 94 SDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI--ATSDY 166 (245)
T ss_pred ccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc--ccccc
Confidence 9999999999987 467888888888776665 899999975 78888899999999999999998643 22222
Q ss_pred EecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC--CCcEEEEeCceeeecchhhhc---CCCeE
Q 006182 272 IAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA--IGRWYCCNDSYVSVSTLQEVL---SEKVY 346 (658)
Q Consensus 272 V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~--~~~Wy~fNDs~Vt~v~~eev~---s~~aY 346 (658)
+.+ ..+++.+|+. ....|+|+|||+|.|.+.++|||+||+|.. .++||.|||+.|+++++++|+ ++.||
T Consensus 167 ~~~-~~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aY 240 (245)
T cd02673 167 LKK-NEEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGY 240 (245)
T ss_pred ccc-cccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceE
Confidence 222 2455666654 356899999999999778999999999984 589999999999999999998 57999
Q ss_pred EEEEE
Q 006182 347 ILFFI 351 (658)
Q Consensus 347 lLfY~ 351 (658)
||||+
T Consensus 241 iLFY~ 245 (245)
T cd02673 241 LIFYD 245 (245)
T ss_pred EEEEC
Confidence 99995
No 25
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.7e-40 Score=329.05 Aligned_cols=215 Identities=38% Similarity=0.662 Sum_probs=182.6
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeE
Q 006182 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~L 200 (658)
.||||+|||..+++.|+.++...... ........+.+.++|.|.+...+.|..|+..+.....+..+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~-------------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l 87 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR-------------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFL 87 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeE
Confidence 79999999999999999987643221 00112335789999999999999999999887776677777
Q ss_pred Eeeccc----hhhHHHHHHhhccccccCCCCccccccCC--ccceeeEEEEEeeCCceeEEEEeeeeecc---CCcccee
Q 006182 201 SLDILN----SCSLKEAMQKFFQPEVLDGNNKYKCDNCK--KLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKA 271 (658)
Q Consensus 201 sL~i~~----~~sLed~L~~~~~~E~Leg~nky~C~kC~--~~~~a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~ 271 (658)
.++++. ..+|+++|+.++..|.+++ +.|..|+ ....+.++..|.++|++|+|+|+||.+.. ..|+...
T Consensus 88 ~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~ 164 (255)
T cd02257 88 SLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTK 164 (255)
T ss_pred EeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCe
Confidence 777765 4899999999999999987 7888887 68888899999999999999999999753 5799999
Q ss_pred Eecccccccchhccc-----CCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC-CcEEEEeCceeeecchhhh-----
Q 006182 272 IAFEEVLVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEV----- 340 (658)
Q Consensus 272 V~fP~~LdL~~~~~~-----~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~-~~Wy~fNDs~Vt~v~~eev----- 340 (658)
|.||.+|++..++.. ........|+|+|||+|.|.+..+|||+||+|... ++||+|||+.|++++++++
T Consensus 165 v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~ 244 (255)
T cd02257 165 VSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGS 244 (255)
T ss_pred EeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccC
Confidence 999999999988752 23346779999999999997669999999999965 9999999999999999998
Q ss_pred cCCCeEEEEEE
Q 006182 341 LSEKVYILFFI 351 (658)
Q Consensus 341 ~s~~aYlLfY~ 351 (658)
...+||+|||+
T Consensus 245 ~~~~~yll~Y~ 255 (255)
T cd02257 245 LSSSAYILFYE 255 (255)
T ss_pred CCCceEEEEEC
Confidence 46899999995
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-40 Score=364.54 Aligned_cols=309 Identities=33% Similarity=0.540 Sum_probs=266.3
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCC-CCccChH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD-LTLDAPA 104 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~i~p~ 104 (658)
..||.|+|+|||||++||.|.+.+..+...+...+.... . .....|+.|++.+++..+++.. ...+.|.
T Consensus 161 l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~-----~-----~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~ 230 (492)
T KOG1867|consen 161 LRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP-----S-----SSGSSCLVCDLDRLFQALYSGHNRTPYSPF 230 (492)
T ss_pred ccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC-----C-----CCCCcchhhhhhhhhhHhhcCCCCCCcChH
Confidence 379999999999999999999999999888776664211 1 1136688999999999999998 7899999
Q ss_pred HHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEe
Q 006182 105 KIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKC 184 (658)
Q Consensus 105 ~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C 184 (658)
.++..+.+..+.+.+.+||||+||+..+++.++.+...-.+.. ...+......++++..|.|.+.+.++|
T Consensus 231 ~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~----------~~~~~~~~c~~iv~~~F~G~L~~~v~c 300 (492)
T KOG1867|consen 231 ELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL----------IASQSNKQCPCIVHTIFSGTLQSDVTC 300 (492)
T ss_pred HHHHHHHHhCcccccccccchHHHHHHhccccccccccccccc----------ccccCCcccccccceeecceeccceee
Confidence 9999999999999999999999999999999998751100000 001111255789999999999999999
Q ss_pred CCCCCeeceeeeeeeEEeeccch----------hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeE
Q 006182 185 LACGAESNKVDEIMDISLDILNS----------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 185 ~~C~~~S~~~E~f~~LsL~i~~~----------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLi 254 (658)
..|+..+...++|++|+|+|+.. .++.+++..+...|......++.|..|+..+.+.++..|.++|.+|.
T Consensus 301 ~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~ 380 (492)
T KOG1867|consen 301 QTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLC 380 (492)
T ss_pred hhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceee
Confidence 99999999999999999999853 67999999999999888888899999999999999999999999999
Q ss_pred EEEeeeeec---cCCccceeEecccccccchhcccCC----CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEE
Q 006182 255 IQLKRFEGI---FGGKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCC 327 (658)
Q Consensus 255 I~LkRF~~~---~~~Ki~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~f 327 (658)
+|++||++. ...|+++.|.||..|+|.+|+..+. +.+...|+|.|||+|+|. .++|||+||.|. .+.||+|
T Consensus 381 ~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~ 458 (492)
T KOG1867|consen 381 LHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKC 458 (492)
T ss_pred eeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe-CCCcEEE
Confidence 999999982 2239999999999999999988622 235789999999999995 999999999999 7889999
Q ss_pred eCceeeecchhhhcCCCeEEEEEEEcCCC
Q 006182 328 NDSYVSVSTLQEVLSEKVYILFFIRANQR 356 (658)
Q Consensus 328 NDs~Vt~v~~eev~s~~aYlLfY~R~~~~ 356 (658)
||+.|+.++.++|++..||+|||.+....
T Consensus 459 dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 459 DDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred cCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 99999999999999999999999987654
No 27
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-41 Score=363.84 Aligned_cols=265 Identities=31% Similarity=0.560 Sum_probs=229.2
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
+|||.|..-+||+|+.+|+|+..|+||+.+..... ..+.+..
T Consensus 87 yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~--------------------------------------~~~et~d 128 (1203)
T KOG4598|consen 87 YVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN--------------------------------------DSLETKD 128 (1203)
T ss_pred eEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc--------------------------------------ccccchh
Confidence 49999999999999999999999999998873221 1111122
Q ss_pred HHHHHHhhhhccCC-----CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEE
Q 006182 106 IQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQS 180 (658)
Q Consensus 106 l~~~L~~l~~~F~~-----g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s 180 (658)
+...|+| .+|||++|+-+.++|+|+....... ...+|.+++.|++..
T Consensus 129 -------lt~sfgw~s~ea~~qhdiqelcr~mfdalehk~k~t~---------------------~~~li~~ly~g~m~d 180 (1203)
T KOG4598|consen 129 -------LTQSFGWTSNEAYDQHDVQELCRLMFDALEHKWKGTE---------------------HEKLIQDLYRGTMED 180 (1203)
T ss_pred -------hHhhcCCCcchhhhhhhHHHHHHHHHHHHHhhhcCch---------------------HHHHHHHHhcchHHH
Confidence 2334555 4899999999999999997654322 246899999999999
Q ss_pred EEEeCCCCCeeceeeeeeeEEeeccc------hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeE
Q 006182 181 QVKCLACGAESNKVDEIMDISLDILN------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 181 ~i~C~~C~~~S~~~E~f~~LsL~i~~------~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLi 254 (658)
.+.|.+|+.++.+.+.|++|.|++.. ..+++++|..|..+|+++|.|+|.|++|++++.+.|.++|..+|-+|+
T Consensus 181 ~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt 260 (1203)
T KOG4598|consen 181 FVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLT 260 (1203)
T ss_pred HHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeE
Confidence 99999999999999999999999975 479999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeccC----CccceeEecccccccchhcccCCC-----------------------------------------
Q 006182 255 IQLKRFEGIFG----GKIDKAIAFEEVLVLSSFMCKASQ----------------------------------------- 289 (658)
Q Consensus 255 I~LkRF~~~~~----~Ki~~~V~fP~~LdL~~~~~~~~~----------------------------------------- 289 (658)
||||||.+++. .|+++++.||++|||..|+.....
T Consensus 261 ~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~ 340 (1203)
T KOG4598|consen 261 IQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNR 340 (1203)
T ss_pred EeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCccc
Confidence 99999999664 599999999999999999775420
Q ss_pred ------------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEEc-CCCcEEEEeCceeeecchhhhc---
Q 006182 290 ------------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVL--- 341 (658)
Q Consensus 290 ------------------------~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~v~~eev~--- 341 (658)
..++.|+|++|.+|.| ++.+|||+|||++ ..++||.|||.+|+.++..++.
T Consensus 341 ~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sf 419 (1203)
T KOG4598|consen 341 YQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSF 419 (1203)
T ss_pred ccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhh
Confidence 0566899999999999 7999999999999 5689999999999999988886
Q ss_pred ----------CCCeEEEEEEEcCCCC
Q 006182 342 ----------SEKVYILFFIRANQRP 357 (658)
Q Consensus 342 ----------s~~aYlLfY~R~~~~~ 357 (658)
+.+||||+|+|.+...
T Consensus 420 gg~~~~~~~s~tnaymlmyr~id~kr 445 (1203)
T KOG4598|consen 420 GGHPSGWNQSNTNAYMLMYRRIDPKR 445 (1203)
T ss_pred CCCCCCccccCcchhhhhhhhcCccc
Confidence 2589999999998654
No 28
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-38 Score=378.02 Aligned_cols=307 Identities=27% Similarity=0.461 Sum_probs=264.1
Q ss_pred ccccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC
Q 006182 17 SEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV 96 (658)
Q Consensus 17 ~~~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 96 (658)
...++.+|+||||.|+||||||||+||+|+.++.||+.+......... ..+......+|+++|..++.+
T Consensus 161 ~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~-----------~~~~~~v~~~lq~lF~~LQ~s 229 (1093)
T KOG1863|consen 161 YDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGH-----------EDPRRSIPLALQRLFYELQMS 229 (1093)
T ss_pred hhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCc-----------ccccchHHHHHHHHHHHHhhc
Confidence 345677899999999999999999999999999999999998752111 112233677899999999999
Q ss_pred CCCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcccccccc
Q 006182 97 DLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 97 ~~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
....+++..+...+.... ....+|||++||++.|++.|+..+.... ....+.++|.|
T Consensus 230 ~~k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~---------------------~~~~l~~lf~g 286 (1093)
T KOG1863|consen 230 KRKYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK---------------------VENTLQDLFTG 286 (1093)
T ss_pred CCCCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh---------------------hhhhhhhhhcC
Confidence 888999999999988554 5557999999999999999998765332 12578999999
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEE
Q 006182 177 ALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQ 256 (658)
Q Consensus 177 ~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~ 256 (658)
.+.+.+.|..|+..+.+.|.|+++.+++.+..++.++|..|+..|.++|+|+ .|..|...+.+.+...+.++|++|.|+
T Consensus 287 ~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~q 365 (1093)
T KOG1863|consen 287 KMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQ 365 (1093)
T ss_pred CcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhh
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred Eeeeeecc----CCccceeEecccccccchhccc--CCCCCC-CcEEEEEEEEeecCCCCCCeEEEEEEc-CCCcEEEEe
Q 006182 257 LKRFEGIF----GGKIDKAIAFEEVLVLSSFMCK--ASQDPQ-PEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCN 328 (658)
Q Consensus 257 LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~--~~~~~~-~~Y~L~aVIvH~G~s~~sGHYvayvr~-~~~~Wy~fN 328 (658)
|+||.++. ..|+++.+.||..|+|.+|+.. ...... +.|.|+||++|.| ..++|||++|++. ..++|++||
T Consensus 366 L~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfd 444 (1093)
T KOG1863|consen 366 LMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFD 444 (1093)
T ss_pred hhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceecc
Confidence 99999943 3699999999999999999884 222233 5999999999977 7999999999997 469999999
Q ss_pred CceeeecchhhhcC----------------CCeEEEEEEEcCCCCCC
Q 006182 329 DSYVSVSTLQEVLS----------------EKVYILFFIRANQRPVS 359 (658)
Q Consensus 329 Ds~Vt~v~~eev~s----------------~~aYlLfY~R~~~~~~~ 359 (658)
|..|+.++..+++. ..||+|+|.|.+.....
T Consensus 445 d~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~ 491 (1093)
T KOG1863|consen 445 DLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI 491 (1093)
T ss_pred CceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence 99999999877663 13899999998764433
No 29
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=325.77 Aligned_cols=316 Identities=26% Similarity=0.426 Sum_probs=256.2
Q ss_pred cccccccccCCCcc---ccccCC--CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhh
Q 006182 3 LAHELQMSWQPSLL---SEKRKR--GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAER 77 (658)
Q Consensus 3 ~~~~~~~sW~~~~~---~~~r~~--~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~ 77 (658)
|+.+.+.+|.+-.. ++..+. -++.+||.|+||+||+||++|.|+....+...+....+...+ ....
T Consensus 275 lq~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~---------~~~~ 345 (749)
T COG5207 275 LQSEQNANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEIC---------YMKN 345 (749)
T ss_pred HHHhhhcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceee---------eecC
Confidence 34566778885422 122222 344699999999999999999999988887766555443322 1223
Q ss_pred ccCChHHHHHHHHHHHhcCCC----CccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCC
Q 006182 78 KRECPFCILEKRIVRSLSVDL----TLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGS 153 (658)
Q Consensus 78 ~~~~~~~~l~~~l~~l~~~~~----~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~ 153 (658)
+..|++|++.+++..+...+. ..+.|..|..+++.-.+.|+..+||||+|||.+||+.|..-...
T Consensus 346 P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S----------- 414 (749)
T COG5207 346 PLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS----------- 414 (749)
T ss_pred CchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch-----------
Confidence 677899999999998877663 56899999999999999999999999999999999999864321
Q ss_pred CCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccc---hhhHHHHHHhhccccccCCCCccc
Q 006182 154 SGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYK 230 (658)
Q Consensus 154 ~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~Leg~nky~ 230 (658)
...+.|.++|...+..++.|..|+.+++..++...+.+++.+ ..++.++++.||.+++++ |.
T Consensus 415 -----------~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~ 479 (749)
T COG5207 415 -----------YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WS 479 (749)
T ss_pred -----------hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----ee
Confidence 123678899999999999999999999999999999998876 578999999999999999 99
Q ss_pred cccCCccceeeEEEEEeeCCceeEEEEeeeee-cc-CCccceeEecc--cccccchhcccCCCC----------------
Q 006182 231 CDNCKKLVSARKQMSILQSPNILVIQLKRFEG-IF-GGKIDKAIAFE--EVLVLSSFMCKASQD---------------- 290 (658)
Q Consensus 231 C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~-~~-~~Ki~~~V~fP--~~LdL~~~~~~~~~~---------------- 290 (658)
|+.|+.+..+.+...|+++|++||++..||.. .+ ..|+..++.+. ..++++.||+.....
T Consensus 480 CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nq 559 (749)
T COG5207 480 CENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQ 559 (749)
T ss_pred hhhhcCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchH
Confidence 99999999999999999999999999999986 22 24666666554 457888887752100
Q ss_pred --------------------------------------------------------------------------------
Q 006182 291 -------------------------------------------------------------------------------- 290 (658)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (658)
T Consensus 560 s~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~R 639 (749)
T COG5207 560 SLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCR 639 (749)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHH
Confidence
Q ss_pred --------------------------------------------CCCcEEEEEEEEeecCCCCCCeEEEEEEcC---CCc
Q 006182 291 --------------------------------------------PQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGR 323 (658)
Q Consensus 291 --------------------------------------------~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~---~~~ 323 (658)
...-|.|.|||+|.|.++++|||++|||.. .-+
T Consensus 640 kal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~k 719 (749)
T COG5207 640 KALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWK 719 (749)
T ss_pred HHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCccee
Confidence 122499999999999999999999999983 248
Q ss_pred EEEEeCceeeecchhhhcCCCeEEEEEEEc
Q 006182 324 WYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (658)
Q Consensus 324 Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~ 353 (658)
|..|||+++-.++.-+++..+.|++||.|.
T Consensus 720 Wvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 720 WVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred EEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 999999999999888888999999999983
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-37 Score=337.72 Aligned_cols=324 Identities=31% Similarity=0.487 Sum_probs=245.8
Q ss_pred cccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhcc------CCCchhhhhccCChHHHHHHHHHHHhcCCCCc
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLT------GDSALDAERKRECPFCILEKRIVRSLSVDLTL 100 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 100 (658)
+||.|+|||||+|||+|.|..+|.+|+.|.....+...-.+. ............-++.+|.. +..|......+
T Consensus 206 rGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~~ksv 284 (877)
T KOG1873|consen 206 RGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSETTKSV 284 (877)
T ss_pred cccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhccCCc
Confidence 799999999999999999999999999998876542110000 00111111122234444444 55566666789
Q ss_pred cChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhc---cCCCCCC--CCCC-------CCCcccCCCC
Q 006182 101 DAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLR---RKGGGSS--GGGG-------GGETINGGSS 168 (658)
Q Consensus 101 i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~---~~~~~~~--~~~~-------~~~~~~~~~s 168 (658)
+.|..|...+....++|.++.||||||+|+.|||.|..|-.+..+.. ..+.+.. ..+. ..+...+...
T Consensus 285 ~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~ 364 (877)
T KOG1873|consen 285 ITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSL 364 (877)
T ss_pred cCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccccccCCc
Confidence 99999999999999999999999999999999999987754433211 0000000 0000 1112333445
Q ss_pred ccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch-----------------------------------------
Q 006182 169 VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS----------------------------------------- 207 (658)
Q Consensus 169 iI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~----------------------------------------- 207 (658)
++...|.|.+.+++.|..|. ++...+.|.+.+++|-..
T Consensus 365 ~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~ 443 (877)
T KOG1873|consen 365 PVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDS 443 (877)
T ss_pred ccccccCCCcccchhhhccc-eeccchhhcccccccccCccccccCCCcccceeccccccCCccccCcccCccccccccc
Confidence 66789999999999999999 666777888888776210
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 444 ~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~~ 523 (877)
T KOG1873|consen 444 LTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSKADMSLDEANMDE 523 (877)
T ss_pred ccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 524 ~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~~ 603 (877)
T KOG1873|consen 524 FSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKTV 603 (877)
T ss_pred cccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCcccceeeeccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------hhHHHH
Q 006182 208 --------------------------------------------------------------------------CSLKEA 213 (658)
Q Consensus 208 --------------------------------------------------------------------------~sLed~ 213 (658)
.+++.|
T Consensus 604 g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~C 683 (877)
T KOG1873|consen 604 GDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQRC 683 (877)
T ss_pred cccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhccCCCCCccHHHH
Confidence 169999
Q ss_pred HHhhccccccCCCCccccccCCcc---------------------------ceeeEEEEEeeCCceeEEEEeeeeecc--
Q 006182 214 MQKFFQPEVLDGNNKYKCDNCKKL---------------------------VSARKQMSILQSPNILVIQLKRFEGIF-- 264 (658)
Q Consensus 214 L~~~~~~E~Leg~nky~C~kC~~~---------------------------~~a~K~~~I~~lP~iLiI~LkRF~~~~-- 264 (658)
|.+|++.|.+.|+|+|.|+.|.+. ..+.+++.|..+|+||+|||+||....
T Consensus 684 L~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~~~ 763 (877)
T KOG1873|consen 684 LKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDIRG 763 (877)
T ss_pred HHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhhhhhc
Confidence 999999999999999999999651 113567788899999999999998632
Q ss_pred -CCccceeEecccccccchhcccCC----CCCCCcEEEEEEEEeecCCCCCCeEEEEEEc--------------------
Q 006182 265 -GGKIDKAIAFEEVLVLSSFMCKAS----QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-------------------- 319 (658)
Q Consensus 265 -~~Ki~~~V~fP~~LdL~~~~~~~~----~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-------------------- 319 (658)
-.|.+..+.|++.+||.+|+.... ......|+|+|||.|.| ++..|||++|+|.
T Consensus 764 ~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~ 842 (877)
T KOG1873|consen 764 RLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAG 842 (877)
T ss_pred hhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCccccccchhccC
Confidence 258899999999999999976532 12456899999999999 7999999999983
Q ss_pred -CCCcEEEEeCceeeecchhhhcCCCeEEEEEEEc
Q 006182 320 -AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (658)
Q Consensus 320 -~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~ 353 (658)
+.++||+..|++|+++++++|+..+||||||+|.
T Consensus 843 ~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 843 IPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred CCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2478999999999999999999999999999995
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-36 Score=313.14 Aligned_cols=234 Identities=25% Similarity=0.422 Sum_probs=190.0
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCcc
Q 006182 22 RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLD 101 (658)
Q Consensus 22 ~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i 101 (658)
.++ ++||.|.|.|||+||+||+|+++|+||+++.. ... ......|++|++..+|
T Consensus 12 ~t~-~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~el~~lf----------- 65 (268)
T cd02672 12 KTN-YAGLENHITNSYCNSLLQLLYFIPPFRNFTAI-ILV-------------ACPKESCLLCELGYLF----------- 65 (268)
T ss_pred ccc-ccccccCCccchHHHHHHHHHhcHHHHHHHHh-hcc-------------cCCcCccHHHHHHHHH-----------
Confidence 344 59999999999999999999999999998322 111 1225678999999988
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEE
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~ 181 (658)
..+ .+-|.++|++.+..+... .+
T Consensus 66 --s~~------------------iq~F~~fll~~i~~~~~~------------------------------~~------- 88 (268)
T cd02672 66 --STL------------------IQNFTRFLLETISQDQLG------------------------------TP------- 88 (268)
T ss_pred --HHH------------------HHHHHHHHHHHHHHHhcc------------------------------cC-------
Confidence 111 233778888888865210 00
Q ss_pred EEeCCCCCeeceeeeeeeEEeeccc-----hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCc----e
Q 006182 182 VKCLACGAESNKVDEIMDISLDILN-----SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPN----I 252 (658)
Q Consensus 182 i~C~~C~~~S~~~E~f~~LsL~i~~-----~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~----i 252 (658)
..|+..+.+.++|+.|+|+++. ..+|+++|+.++..|... ++.|++|++.+.+.++..|.++|+ |
T Consensus 89 ---~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~V 162 (268)
T cd02672 89 ---FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLV 162 (268)
T ss_pred ---CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccce
Confidence 5699999999999999999985 459999999999998654 599999999999999999999999 9
Q ss_pred eEEEEeeeeecc---------CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC---
Q 006182 253 LVIQLKRFEGIF---------GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA--- 320 (658)
Q Consensus 253 LiI~LkRF~~~~---------~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~--- 320 (658)
|+|||+||.+.. ..|+...|.||..+++..+.... ......|+|+|||+|.|.+..+|||+||+|..
T Consensus 163 L~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~-~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~ 241 (268)
T cd02672 163 LVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRG-QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEE 241 (268)
T ss_pred EEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhccC-CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCC
Confidence 999999998522 24677889999887776655443 24567899999999999666999999999984
Q ss_pred --CCcEEEEeCceeeecchhhhcCCCeEEEEEE
Q 006182 321 --IGRWYCCNDSYVSVSTLQEVLSEKVYILFFI 351 (658)
Q Consensus 321 --~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~ 351 (658)
.++||+|||..|++|+. .||||||+
T Consensus 242 ~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 242 STHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 57899999999999987 99999995
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-35 Score=343.98 Aligned_cols=321 Identities=31% Similarity=0.499 Sum_probs=265.5
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccC
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~ 102 (658)
.|. +||.|+|||||||+.+|+|.+.++++++++.......+ +..... ......--.+..++..++......+.
T Consensus 244 ~g~-~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ei---n~~n~~---~~~~~~~~~~~~l~~~~~s~~~~~v~ 316 (842)
T KOG1870|consen 244 RGE-TGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREI---NESNPL---GSAGEVASSFADLIKQLWSGNKSAVA 316 (842)
T ss_pred ccc-cccccCCccccchhhhhhhccCcchhHHHHhHhhHhhh---cccCCC---cccceechhhhhHHHHhccCCccccC
Confidence 454 99999999999999999999999999999886654311 111111 12222223344455556665555899
Q ss_pred hHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--------CCCCCcccCCCCcccccc
Q 006182 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGG--------GGGGETINGGSSVVKEIF 174 (658)
Q Consensus 103 p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~--------~~~~~~~~~~~siI~~lF 174 (658)
|..+...+..+.+.|.+..|||.+||+.+++|.+|+.+.......+........ ..+........++|.++|
T Consensus 317 ~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~ 396 (842)
T KOG1870|consen 317 PTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLF 396 (842)
T ss_pred chhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeee
Confidence 999999999999999999999999999999999999988776541111111110 112333667788999999
Q ss_pred ccEEEEEEEeCCCCCeeceeeeeeeEEeeccch-----------------------------------------------
Q 006182 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNS----------------------------------------------- 207 (658)
Q Consensus 175 ~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~----------------------------------------------- 207 (658)
.|+..+...|..|+..+.++++|.+|+++++..
T Consensus 397 ~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 476 (842)
T KOG1870|consen 397 DGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLLSW 476 (842)
T ss_pred cceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999998720
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 477 ~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 477 ELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred hcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006182 208 -------------------------------------------------------------------------------- 207 (658)
Q Consensus 208 -------------------------------------------------------------------------------- 207 (658)
T Consensus 557 ~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (842)
T KOG1870|consen 557 VLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALR 636 (842)
T ss_pred ccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccc
Confidence
Q ss_pred -----------------------------------------------------------hhHHHHHHhhccccccCCCCc
Q 006182 208 -----------------------------------------------------------CSLKEAMQKFFQPEVLDGNNK 228 (658)
Q Consensus 208 -----------------------------------------------------------~sLed~L~~~~~~E~Leg~nk 228 (658)
.+|++||+.|+.+|.|..+++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~ 716 (842)
T KOG1870|consen 637 FFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDR 716 (842)
T ss_pred ccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCcccc
Confidence 069999999999999999999
Q ss_pred cccccCCccceeeEEEEEeeCCceeEEEEeeeee--ccCCccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeec
Q 006182 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSG 305 (658)
Q Consensus 229 y~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G 305 (658)
|.|++|+++..|.|+..++++|+||+||||||.+ ....|+.+.|+|| ..||+++|+..... ..|+|+||++|+|
T Consensus 717 w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~---~~Y~l~av~nHyG 793 (842)
T KOG1870|consen 717 WYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ---VLYDLYAVGNHYG 793 (842)
T ss_pred ccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc---ceeeeeeeecccC
Confidence 9999999999999999999999999999999998 3347999999999 67999999886652 8999999999999
Q ss_pred CCCCCCeEEEEEEc-CCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcC
Q 006182 306 FSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 306 ~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~ 354 (658)
.+.+|||+||.|. .+++||.|||+.|++++++++..+.||+|||+|++
T Consensus 794 -~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 794 -QLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred -CcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 5999999999999 58999999999999999999999999999999974
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.1e-32 Score=290.69 Aligned_cols=280 Identities=24% Similarity=0.365 Sum_probs=237.5
Q ss_pred cccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHh-cCCCCccChHH
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLDAPAK 105 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~i~p~~ 105 (658)
+||.|.+++||+||+||+|+++|++|+.++.+. . | ....|++|+|.-+|.++. .+.+..+.+..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~-c------------~~e~cL~cELgfLf~ml~~~~~g~~cq~sN 65 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E-C------------PKEFCLLCELGFLFDMLDSKAKGINCQASN 65 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C-C------------CccccHHHHHHHHHHHhhhhcCCCcChHHH
Confidence 599999999999999999999999999999876 1 2 266799999999999988 77788999999
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeC
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCL 185 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~ 185 (658)
|.++|+........+.|+|+++|+++|++.|+.++......... ..........+.|.++|+......++|.
T Consensus 66 flr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~f~~~~~~~~~c~ 137 (295)
T PF13423_consen 66 FLRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH--------TSENSSSSPESSISQLFGTSFETTIRCT 137 (295)
T ss_pred HHHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc--------ccccccCCCcchHHHHhCcceeeeeccc
Confidence 99999988766666789999999999999999997755431000 0001112345789999999999999999
Q ss_pred CCCCeeceeeeeeeEEeeccc---hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeee
Q 006182 186 ACGAESNKVDEIMDISLDILN---SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG 262 (658)
Q Consensus 186 ~C~~~S~~~E~f~~LsL~i~~---~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~ 262 (658)
.|+..+.+.+....+.+..+. ..++.++|+.++..|.... ..|++|++......+..|.++|+||.|.++|+..
T Consensus 138 ~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~ 214 (295)
T PF13423_consen 138 SCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSE 214 (295)
T ss_pred ccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCc
Confidence 999999988888888888876 5799999999999988886 8999999999999999999999999999999876
Q ss_pred c--cCCccceeEecccccccchhcccCC------CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC---CCcEEEEeCce
Q 006182 263 I--FGGKIDKAIAFEEVLVLSSFMCKAS------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA---IGRWYCCNDSY 331 (658)
Q Consensus 263 ~--~~~Ki~~~V~fP~~LdL~~~~~~~~------~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~---~~~Wy~fNDs~ 331 (658)
. ...|....+.+|..+++..++..+. .....+|+|.|+|||.|.+..+|||++|||.+ +.+||+|||..
T Consensus 215 ~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDfl 294 (295)
T PF13423_consen 215 EEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFL 294 (295)
T ss_pred ccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEe
Confidence 4 2467778899999999998876543 34677999999999999989999999999985 36999999976
Q ss_pred e
Q 006182 332 V 332 (658)
Q Consensus 332 V 332 (658)
|
T Consensus 295 V 295 (295)
T PF13423_consen 295 V 295 (295)
T ss_pred C
Confidence 5
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=7.2e-32 Score=274.83 Aligned_cols=176 Identities=22% Similarity=0.378 Sum_probs=136.4
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeE
Q 006182 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDI 200 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~L 200 (658)
+|||+.||+.+|++.++..+.. +.-++|.|--..+-. . +.-.|.++.|
T Consensus 22 ~q~D~~e~~~~l~~~~~~~~~~--------------------------~~~~~~~~g~~~~~~---~---~~~~e~~l~l 69 (241)
T cd02670 22 EQQDPEEFFNFITDKLLMPLLE--------------------------PKVDIIHGGKKDQDD---D---KLVNERLLQI 69 (241)
T ss_pred HhcCHHHHHHHHHHHHhhhhhh--------------------------HHHHHHhcCcccccc---c---cccccceEEe
Confidence 6899999999999998864432 233444442111100 0 2334677777
Q ss_pred Eeecc---chhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc--CCccceeEecc
Q 006182 201 SLDIL---NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE 275 (658)
Q Consensus 201 sL~i~---~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP 275 (658)
.++.. +..+|++||+.|+..|. |.++|++|+||||||.+.. ..|+++.|.||
T Consensus 70 ~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP 126 (241)
T cd02670 70 PVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP 126 (241)
T ss_pred ecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC
Confidence 77654 35799999999998875 8899999999999999844 47999999999
Q ss_pred cccccchhcccCC---------------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC------------C
Q 006182 276 EVLVLSSFMCKAS---------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI------------G 322 (658)
Q Consensus 276 ~~LdL~~~~~~~~---------------------~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~------------~ 322 (658)
..|||.+|+.... .....+|+|+|||+|.|.+..+|||+||+|... +
T Consensus 127 ~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~ 206 (241)
T cd02670 127 DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNA 206 (241)
T ss_pred CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCC
Confidence 9999999986542 124568999999999997799999999999854 7
Q ss_pred cEEEEeCceeeecchh------hhcCCCeEEEEEE
Q 006182 323 RWYCCNDSYVSVSTLQ------EVLSEKVYILFFI 351 (658)
Q Consensus 323 ~Wy~fNDs~Vt~v~~e------ev~s~~aYlLfY~ 351 (658)
.||+|||..|+.+... .+..+.||||||+
T Consensus 207 ~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 207 QWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred eEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 9999999988876432 4567899999996
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=301.38 Aligned_cols=317 Identities=27% Similarity=0.405 Sum_probs=243.8
Q ss_pred cccccCCCcchHH--HHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhc--CCCCccC
Q 006182 27 LGLRNLGNSCYLN--SVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLS--VDLTLDA 102 (658)
Q Consensus 27 vGL~NlGNTCYlN--SvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~i~ 102 (658)
-|..|.+++|+.| ++.|.++.+-.+++.......... .... .+ ...+..+...+..... .....+.
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~~i~ 302 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLK------RSYI---IK-EELLTCLLDLFSSISSRKKLVGRIS 302 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhccc------chhh---hh-HHHHHHhhhhccchhhhcccccccC
Confidence 5889999999999 999999999988854433222110 0000 00 0111111111111111 1125789
Q ss_pred hHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCC---CCCCCCCC--------CcccCCCCccc
Q 006182 103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGG---SSGGGGGG--------ETINGGSSVVK 171 (658)
Q Consensus 103 p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~siI~ 171 (658)
|..++..+.+....|..+.||||+||+.++++.+++.+...........+ ..+..... ....-...+++
T Consensus 303 p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~ 382 (587)
T KOG1864|consen 303 PTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVS 382 (587)
T ss_pred cchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHH
Confidence 99999999999999999999999999999999999876544321111100 01111110 11223567899
Q ss_pred cccccEEEEEEEeCCCCCeeceeeeeeeEEeecc--chhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeC
Q 006182 172 EIFGGALQSQVKCLACGAESNKVDEIMDISLDIL--NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 172 ~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~--~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~l 249 (658)
.+|.|++..++.|..|...+.+.+.|.+++++++ ...++..+|..|...|.+.|+++|.|++|...+.|.+.+.+.++
T Consensus 383 ~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~l 462 (587)
T KOG1864|consen 383 KLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKL 462 (587)
T ss_pred HhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCC
Confidence 9999999999999999999999999999999999 58999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeeeeec----cCCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEE
Q 006182 250 PNILVIQLKRFEGI----FGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY 325 (658)
Q Consensus 250 P~iLiI~LkRF~~~----~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy 325 (658)
|.+|+||||||.+. ...|+...+.+|.++.+......+. .+..+|.|+|||||.|.+++.|||+||+|.....|+
T Consensus 463 p~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~-~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl 541 (587)
T KOG1864|consen 463 PYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDN-NPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWL 541 (587)
T ss_pred cceeeeehhccccccccccccccccccccccceeecccccccc-CccceeeEEEEEEeccCCCCCcceEEEEeeCCCCce
Confidence 99999999999983 2368888899999998886655443 124799999999999999999999999999655699
Q ss_pred EEeCceeeecchhhhcC---CCeEEEEEEEcC
Q 006182 326 CCNDSYVSVSTLQEVLS---EKVYILFFIRAN 354 (658)
Q Consensus 326 ~fNDs~Vt~v~~eev~s---~~aYlLfY~R~~ 354 (658)
.|||..|+.++.++|.. ..+|+++|...-
T Consensus 542 ~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 542 LFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred ecccccccccCcchhhhccCCCccceeeeEEe
Confidence 99999999999888874 567777777654
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=253.63 Aligned_cols=315 Identities=24% Similarity=0.340 Sum_probs=223.4
Q ss_pred CCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC-------
Q 006182 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV------- 96 (658)
Q Consensus 24 g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------- 96 (658)
--|+|+.|-||.|||||+||+|+.|+||.+.+......... . ....+.+......+..-++.
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~-----~------~~~stp~lda~~~~~~df~n~~~~k~~ 94 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGT-----V------KEGSTPLLDASRPASSDFNNDSDAKLP 94 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCc-----e------ecccchhHHHHHHHHhhccccchhhhh
Confidence 44699999999999999999999999999988665422111 0 01111111111111111110
Q ss_pred ----------------------CCCccChHHHHHHHHhh--hhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCC
Q 006182 97 ----------------------DLTLDAPAKIQSCLRIF--AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGG 152 (658)
Q Consensus 97 ----------------------~~~~i~p~~l~~~L~~l--~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~ 152 (658)
....+-|..+...+... .+...+|.|+||.||+..++|.||+++....+.......
T Consensus 95 r~N~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~ 174 (420)
T KOG1871|consen 95 RKNSLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPND 174 (420)
T ss_pred hhccCCccccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcc
Confidence 01122233333222221 244567999999999999999999998766642111110
Q ss_pred C--------CCC-CCCCC-------------------------cccCCCCccccccccEEEEEEEeCCCCCeeceeeeee
Q 006182 153 S--------SGG-GGGGE-------------------------TINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIM 198 (658)
Q Consensus 153 ~--------~~~-~~~~~-------------------------~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~ 198 (658)
. ++. +..+. +..-..++|.++|+|++++...-.. .+.+...+||.
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccc
Confidence 0 000 00000 0223457899999999998776553 55678899999
Q ss_pred eEEeec--cchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeec-c--CCccceeEe
Q 006182 199 DISLDI--LNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGI-F--GGKIDKAIA 273 (658)
Q Consensus 199 ~LsL~i--~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~-~--~~Ki~~~V~ 273 (658)
.|+|++ .+..++++++..+...|.+.+ |.-. -+....+.+++.+.++|++|++|++||.|. . ..|+.+.++
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~ 329 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIE 329 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhh
Confidence 999999 567899999999999999986 5544 667788889999999999999999999983 2 368888899
Q ss_pred cccccccchhccc-----CCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEc-CCCcEEEEeCceeeecchhhhcC----C
Q 006182 274 FEEVLVLSSFMCK-----ASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVSTLQEVLS----E 343 (658)
Q Consensus 274 fP~~LdL~~~~~~-----~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~v~~eev~s----~ 343 (658)
+|-++.+..-+.. ........|+|.+||.|.|.++..|||.+-+.+ ..+.|+.+||..|..+..++|.. .
T Consensus 330 ~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r 409 (420)
T KOG1871|consen 330 YPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSR 409 (420)
T ss_pred ccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCcc
Confidence 9877777654332 112356689999999999999999999999987 45789999999999999999984 6
Q ss_pred CeEEEEEEEcC
Q 006182 344 KVYILFFIRAN 354 (658)
Q Consensus 344 ~aYlLfY~R~~ 354 (658)
+||+|+|+|.+
T Consensus 410 ~~yllyY~~~d 420 (420)
T KOG1871|consen 410 TPYLLYYIEAD 420 (420)
T ss_pred chheeEeeecC
Confidence 89999999864
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=259.44 Aligned_cols=299 Identities=21% Similarity=0.219 Sum_probs=221.5
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccC
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~ 102 (658)
-+.|+||.|+|||||||+.+|+|..+|+++..+......... .. ........+.++...|..+... ..+.
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~-----~~---t~~~a~~i~~~mR~~f~~~~~~--~~v~ 171 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGR-----GD---TWERRRRISIETRTCFRPLCEK--GAVA 171 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccC-----Cc---hhhhhhhHHHHHHHHHHhhhcc--CCcc
Confidence 467899999999999999999999999988876654422110 10 1111223455555666666555 7899
Q ss_pred hHHHHHHHHhhhhccCC------CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcccccccc
Q 006182 103 PAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 103 p~~l~~~L~~l~~~F~~------g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
|..+.+.+....+.|.. ..||||.|++..++..++..+...... ......+..+|++
T Consensus 172 pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~-----------------~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 172 PINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA-----------------PCLEAEAAAGFGA 234 (473)
T ss_pred hHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc-----------------cchhHHHHHhhcc
Confidence 99999999888777754 689999999999999988764321110 0234568899999
Q ss_pred EEEEEEEeCCCCCeece--eeeeeeEEeeccc-hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCcee
Q 006182 177 ALQSQVKCLACGAESNK--VDEIMDISLDILN-SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNIL 253 (658)
Q Consensus 177 ~l~s~i~C~~C~~~S~~--~E~f~~LsL~i~~-~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iL 253 (658)
.+..+..|.+-...... .|.|..|..-+.. ...+...|..-+..+.-. .-+.-+......|...|.++|.+|
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~yl 309 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYL 309 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccc
Confidence 99999999887666443 7888888888865 344555555443322211 112223333444777899999999
Q ss_pred EEEEeeeeec----cCCccceeEecccccccchhcccCCCC---------------------------------------
Q 006182 254 VIQLKRFEGI----FGGKIDKAIAFEEVLVLSSFMCKASQD--------------------------------------- 290 (658)
Q Consensus 254 iI~LkRF~~~----~~~Ki~~~V~fP~~LdL~~~~~~~~~~--------------------------------------- 290 (658)
+|+..||.|. ...|+.+.|.||..||.-+++.++...
T Consensus 310 Tvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~ 389 (473)
T KOG1872|consen 310 TVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEG 389 (473)
T ss_pred eEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccc
Confidence 9999999983 236888899999999999988865310
Q ss_pred ----------CCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcC-------CCeEEEEEEEc
Q 006182 291 ----------PQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS-------EKVYILFFIRA 353 (658)
Q Consensus 291 ----------~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s-------~~aYlLfY~R~ 353 (658)
....|+|.|||.|.|.+..+|||++|+|...+.|++|||..|+.+..+++.. ..||+|+|.-+
T Consensus 390 ~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 390 MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred hhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 1457999999999999999999999999988899999999999999888874 58999999754
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.88 E-value=9.4e-23 Score=211.40 Aligned_cols=282 Identities=21% Similarity=0.306 Sum_probs=209.6
Q ss_pred CCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCC--Ccc
Q 006182 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL--TLD 101 (658)
Q Consensus 24 g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--~~i 101 (658)
|. |||.|+-++-|+|++||+|.+.+++|+|++.....-. ....+...+..++..+|.... ..+
T Consensus 133 G~-VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d--------------~~~~lv~rl~~l~rklw~~r~fk~hv 197 (442)
T KOG2026|consen 133 GF-VGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFD--------------NLTELVQRLGELIRKLWNPRNFKGHV 197 (442)
T ss_pred ee-eccchhhhHHHHHHHHHHHhccchhhhhhcccccccc--------------hhHHHHHHHHHHHHHhcChhhhcccC
Confidence 44 9999999999999999999999999999987533110 112244555666667777665 678
Q ss_pred ChHHHHHHHHhh-hhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEE
Q 006182 102 APAKIQSCLRIF-AEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQS 180 (658)
Q Consensus 102 ~p~~l~~~L~~l-~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s 180 (658)
+|.++++++..+ ...|..++|-|+.|||.|||+.||..+.... ...++|+..|+|.+..
T Consensus 198 Sphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k--------------------~~~SIi~~~fqG~~ri 257 (442)
T KOG2026|consen 198 SPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK--------------------KASSIIHKSFQGEVRI 257 (442)
T ss_pred CHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC--------------------CchhHhhHhhcceEEe
Confidence 999998887665 5679999999999999999999999875433 2348999999999876
Q ss_pred EEEeCC----CCCeeceeeeeeeEEeeccchh--------------hHHHHHHhhccccccCCCCccccccCCccceeeE
Q 006182 181 QVKCLA----CGAESNKVDEIMDISLDILNSC--------------SLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242 (658)
Q Consensus 181 ~i~C~~----C~~~S~~~E~f~~LsL~i~~~~--------------sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K 242 (658)
..+-.. -.......-+|+.|+|++|..+ .|-+.|..|-..-.-+ +. ....+ +
T Consensus 258 ~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~ 327 (442)
T KOG2026|consen 258 VKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-M 327 (442)
T ss_pred eeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-h
Confidence 443322 1112345678999999998744 4455555553321111 11 11122 7
Q ss_pred EEEEeeCCceeEEEEeeeee--ccCCccceeEecc-cccccchhcccC--CCCCCCcEEEEEEEEeecCCCCCCeEEEEE
Q 006182 243 QMSILQSPNILVIQLKRFEG--IFGGKIDKAIAFE-EVLVLSSFMCKA--SQDPQPEYKLFGTIVHSGFSPDSGHYYAYI 317 (658)
Q Consensus 243 ~~~I~~lP~iLiI~LkRF~~--~~~~Ki~~~V~fP-~~LdL~~~~~~~--~~~~~~~Y~L~aVIvH~G~s~~sGHYvayv 317 (658)
+..+.++|++|++|++||.- -+..|+.+.++|| ..+++.++.... .......|.|.|-++|. ...|||...+
T Consensus 328 rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi 404 (442)
T KOG2026|consen 328 RFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQI 404 (442)
T ss_pred heeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEE
Confidence 78899999999999999986 3357999999999 566665554332 22233689999999996 5779999999
Q ss_pred Ec-CCCcEEEEeCceeeecchhhhcCCCeEEEEEEEc
Q 006182 318 KD-AIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRA 353 (658)
Q Consensus 318 r~-~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~ 353 (658)
++ ..+.||..+|-+|++...+-+.-..+||-+|++.
T Consensus 405 ~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 405 YDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred EeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 98 4589999999999999988888888898888765
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.76 E-value=4e-18 Score=191.76 Aligned_cols=298 Identities=20% Similarity=0.246 Sum_probs=210.0
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
+.||.-.+-+-|.|++||+|+++|+||.+++.+.. ....|++|+|.-+|.++-.+.+..+....
T Consensus 499 yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C----------------~~e~CL~CELGFLF~Ml~~S~G~~Cqa~N 562 (1118)
T KOG1275|consen 499 YAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC----------------TKEFCLLCELGFLFTMLDSSTGDPCQANN 562 (1118)
T ss_pred eeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc----------------chhHHHHHHHHHHHHHHhhhcCCccchhH
Confidence 47999999999999999999999999999998743 26678999999999999888889999999
Q ss_pred HHHHHHhhhhccCCC---Cc-------------CcHHHHHHHHHHHHH--HHhhhhhhhccCCCCCCCCCCCCCcccCCC
Q 006182 106 IQSCLRIFAEHFKCG---RQ-------------EDAHEFLRYVIDACH--NTCLRLKKLRRKGGGSSGGGGGGETINGGS 167 (658)
Q Consensus 106 l~~~L~~l~~~F~~g---~Q-------------qDA~EFl~~LLd~L~--~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (658)
|+++++.....-..| .+ |||..|......... .++.......... +........
T Consensus 563 Flraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~--------~~~~~vn~~ 634 (1118)
T KOG1275|consen 563 FLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVD--------GESFKVNYA 634 (1118)
T ss_pred HHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhccc--------Cceeeecch
Confidence 999998774433222 11 233322222111111 0011111100000 011123345
Q ss_pred CccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch---------hhHHHHHHhhccccccCCCCccccccCCccc
Q 006182 168 SVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS---------CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLV 238 (658)
Q Consensus 168 siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~---------~sLed~L~~~~~~E~Leg~nky~C~kC~~~~ 238 (658)
..+.+.|+..+.....|..|+..+.+......+.+..+.. ..+.+.|++-... ...-.-.|+.|++.+
T Consensus 635 ~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l---~kn~~~~C~~C~k~e 711 (1118)
T KOG1275|consen 635 PVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSL---FKNKQAWCETCTKPE 711 (1118)
T ss_pred hHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhc---ccccccccccccCCC
Confidence 6899999999999999999999987766666666666642 2344444443222 222226899999999
Q ss_pred eeeEEEEEeeCCceeEEEEeeeee------ccCCccceeEecccccccchhcccCC-----------------CCCCCcE
Q 006182 239 SARKQMSILQSPNILVIQLKRFEG------IFGGKIDKAIAFEEVLVLSSFMCKAS-----------------QDPQPEY 295 (658)
Q Consensus 239 ~a~K~~~I~~lP~iLiI~LkRF~~------~~~~Ki~~~V~fP~~LdL~~~~~~~~-----------------~~~~~~Y 295 (658)
....+..+..+|.+|.|...-+.. ....|....|-+|..+.+...-.... +..-.+|
T Consensus 712 p~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~vY 791 (1118)
T KOG1275|consen 712 PTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAVVY 791 (1118)
T ss_pred CcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCccccCCceEEE
Confidence 999999999999999998776653 11235566788887777654321110 1233689
Q ss_pred EEEEEEEeecCCCCCCeEEEEEEcC---------CCcEEEEeCceeeecchhhhcC-----CCeEEEEE
Q 006182 296 KLFGTIVHSGFSPDSGHYYAYIKDA---------IGRWYCCNDSYVSVSTLQEVLS-----EKVYILFF 350 (658)
Q Consensus 296 ~L~aVIvH~G~s~~sGHYvayvr~~---------~~~Wy~fNDs~Vt~v~~eev~s-----~~aYlLfY 350 (658)
+|.|+|+|.|.+.+.+|.+++|+.. +.+||.|||.-|.+++++|++. +.|.||+|
T Consensus 792 eL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 792 ELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 9999999999888999999999851 3599999999999999999984 78999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.39 E-value=2.3e-06 Score=86.36 Aligned_cols=128 Identities=16% Similarity=0.371 Sum_probs=84.7
Q ss_pred CCccccccccEEEEEEEeCCCCCeece-----eeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceee
Q 006182 167 SSVVKEIFGGALQSQVKCLACGAESNK-----VDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSAR 241 (658)
Q Consensus 167 ~siI~~lF~G~l~s~i~C~~C~~~S~~-----~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~ 241 (658)
...+.++|...+.=...|..||+.... ..+|..+. |+-.- +....---|.+|+.+ ..+
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~---pdwhP-------------LnA~h~~pCn~C~~k-sQ~ 182 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVI---PDWHP-------------LNAVHFGPCNSCNSK-SQR 182 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCC---CCCCc-------------ccccccCCCcccCCh-HHh
Confidence 467899999999999999999987431 12222221 11111 111111379999864 455
Q ss_pred EEEEEeeCCceeEEEEeeeeeccCCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCC
Q 006182 242 KQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAI 321 (658)
Q Consensus 242 K~~~I~~lP~iLiI~LkRF~~~~~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~ 321 (658)
+++.+.++|+|+++|+. .. +|.. ||..|-.. -.+..|++.+||-+.- +--|+++|+++.+
T Consensus 183 rkMvlekv~~vfmLHFV---eG----------LP~n-dl~~ysF~---feg~~Y~Vt~VIQY~~---~~~HFvtWi~~~d 242 (275)
T PF15499_consen 183 RKMVLEKVPPVFMLHFV---EG----------LPHN-DLQHYSFH---FEGCLYQVTSVIQYQA---NLNHFVTWIRDSD 242 (275)
T ss_pred HhhhhhcCchhhhhhhh---cc----------CCcc-CCCcccee---ecCeeEEEEEEEEEec---cCceeEEEEEcCC
Confidence 67789999999999943 21 1211 22222111 1246899999999875 3689999999999
Q ss_pred CcEEEEeCce
Q 006182 322 GRWYCCNDSY 331 (658)
Q Consensus 322 ~~Wy~fNDs~ 331 (658)
|.|..|||-+
T Consensus 243 GsWLecDDLk 252 (275)
T PF15499_consen 243 GSWLECDDLK 252 (275)
T ss_pred CCeEeeccCC
Confidence 9999999954
No 41
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=97.14 E-value=0.0019 Score=55.78 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhc
Q 006182 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFS 649 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (658)
++-|++.-..-|..|||.|+|...-|..=|. ......+.++|=..+.--| +..||+++|++|+.+++.|-
T Consensus 16 ~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~A----r~~VP~~vk~ell~~Ir~~L 85 (86)
T PF10163_consen 16 YERLKELLRQRLIECGWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPKA----RAMVPDEVKKELLQRIRAFL 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHHH----HHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHH----HHHCCHHHHHHHHHHHHHHh
Confidence 4445555566789999999999988774333 2234457777666666555 45799999999999999984
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0016 Score=74.80 Aligned_cols=109 Identities=22% Similarity=0.219 Sum_probs=57.9
Q ss_pred cccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcC-----C--CCcc
Q 006182 29 LRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSV-----D--LTLD 101 (658)
Q Consensus 29 L~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-----~--~~~i 101 (658)
|.|.||+||.|++||+|..+|+|+--+..+...........+.. .......++....+....... . ....
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDS---LNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNL 110 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchh---hccccccchhHHHHHHHHHhhhccCCccccccc
Confidence 99999999999999999999999976655432111000000111 111111122221111111111 0 0111
Q ss_pred ChHHHHHHHHhh---hhccCCCCcCcHHHHHHHHHHHHHHHh
Q 006182 102 APAKIQSCLRIF---AEHFKCGRQEDAHEFLRYVIDACHNTC 140 (658)
Q Consensus 102 ~p~~l~~~L~~l---~~~F~~g~QqDA~EFl~~LLd~L~~el 140 (658)
.-..+...+... ...|....|+||++++.-++-.+....
T Consensus 111 s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 111 SVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred hHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 222222222222 344777899999999999888877653
No 43
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0011 Score=76.59 Aligned_cols=218 Identities=15% Similarity=0.193 Sum_probs=129.0
Q ss_pred CcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCc-ccCCCCccccccccEEEEEEEeCCCCCeecee-eeee
Q 006182 121 RQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGET-INGGSSVVKEIFGGALQSQVKCLACGAESNKV-DEIM 198 (658)
Q Consensus 121 ~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~-~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~-E~f~ 198 (658)
...++.++|..++..|+............. ..--..+..| .....++++++|+.....+..|..|....+-. ..-+
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~--~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~ 625 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVV--VAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSY 625 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHH--HHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhh
Confidence 455788899999988887654321100000 0000001112 22234778899999999999999998875532 2222
Q ss_pred eEEeeccch---------hhHHHHHHhhccccccCCCCccccc----cCCccceeeEEEEEeeCCceeEEEEeeeeeccC
Q 006182 199 DISLDILNS---------CSLKEAMQKFFQPEVLDGNNKYKCD----NCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 199 ~LsL~i~~~---------~sLed~L~~~~~~E~Leg~nky~C~----kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
.+.+..... .++++.|.. ...+ .+..|+ +||+..-. ...|..+|+|++|.|.+-.-.+.
T Consensus 626 ~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~-----~~m~cD~~~gGCgk~n~v--~h~is~~P~vftIvlewEk~ETe 697 (806)
T KOG1887|consen 626 GIVIAADSLRQLKCAFQNITFEDILKN-IRMN-----DKMLCDKETGGCGKANLV--HHILSPCPPVFTIVLEWEKSETE 697 (806)
T ss_pred hhhccchhhhhHHHHhhhhhHHHHHHH-hhhh-----hhhcccccCCCCcchhhh--hhhcCCCCCeeEeeeehhcccch
Confidence 222222222 233333333 1211 123453 47754333 33488899999997765332111
Q ss_pred Ccc-ceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEE--EEeCceeeec-chhhhc
Q 006182 266 GKI-DKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY--CCNDSYVSVS-TLQEVL 341 (658)
Q Consensus 266 ~Ki-~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy--~fNDs~Vt~v-~~eev~ 341 (658)
.-+ .+...+..++|++.... ....+...|+|+++|..+.. .++|.|+.+. .++|. ..+|..+..+ +|.+|+
T Consensus 698 ~eI~~T~~aL~teidis~~y~-~g~ep~t~yrLVSmv~~~e~---~~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 698 KEISETTKALATEIDISRLYR-EGLEPNTKYRLVSMVGNHEE---GEEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred HHHHHHHHHHHhhhhHHHHhh-hccCcCceeEEEEEeeeccc---cceEEEeecc-CCcchhhHHHHHHhhhccchHHHH
Confidence 111 22234557778776654 33457789999999998741 5999999999 56777 9999988888 577877
Q ss_pred C------CCeEEEEEEEc
Q 006182 342 S------EKVYILFFIRA 353 (658)
Q Consensus 342 s------~~aYlLfY~R~ 353 (658)
+ -.+-+|||++.
T Consensus 773 r~c~e~~vrpeil~ye~~ 790 (806)
T KOG1887|consen 773 RFCGERKVRPEILFYEAQ 790 (806)
T ss_pred HHHhcccccHHHHHHHHH
Confidence 4 24677777663
No 44
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=95.83 E-value=0.0029 Score=69.52 Aligned_cols=101 Identities=19% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHH----HHHHHhcCCC
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEK----RIVRSLSVDL 98 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~l~~~~~ 98 (658)
.|...|++-.-|.||+||.|-+++.-......++--.+... ..--+-+++. .+.+-++...
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p~---------------d~~nYse~q~~LRseiVnplr~n~ 429 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPPS---------------DSMNYSEMQHSLRSEIVNPLRRNQ 429 (724)
T ss_pred hcccccccCCcchhhccccccccccccccccccccCCCCcc---------------cccccHHHHHHHHHhhhchhhhcc
Confidence 45557899999999999999888754333322221111110 0001112222 2222222222
Q ss_pred --CccChHHHHHHHHhhhhccCC-CCcCcHHHHHHHHHHHHHH
Q 006182 99 --TLDAPAKIQSCLRIFAEHFKC-GRQEDAHEFLRYVIDACHN 138 (658)
Q Consensus 99 --~~i~p~~l~~~L~~l~~~F~~-g~QqDA~EFl~~LLd~L~~ 138 (658)
.......++..+..++...+. .+..|+.|||..++..+-.
T Consensus 430 fVr~~~~mklR~~ldql~~~sG~tceekdpEEFLn~l~t~i~r 472 (724)
T KOG3556|consen 430 FVRQNPAMKLRVELDQLNFRSGDTCEEKDPEEFLNGLKTLIAR 472 (724)
T ss_pred eeecCHHHHHHHHHHhhhccccCcccccCHHHHHHHHHHHhcc
Confidence 122334455555555444332 2677999999988887654
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=95.14 E-value=0.22 Score=53.33 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred cccccCCCcchHHHHHHHHHccHH-HHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYTPP-LANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~ip~-Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
+=|+=.-|+||+||++=+|-++.. |+... +...+..+ ..-+|..
T Consensus 103 ~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~~------------------------------l~~aw~~f-----~~G~~~~ 147 (320)
T PF08715_consen 103 RVLKQSDNNCWVNAACLQLQALKIKFKSPG------------------------------LDEAWNEF-----KAGDPAP 147 (320)
T ss_dssp EEE---TTTHHHHHHHHHHTTST--BSSHH------------------------------HHHHHHHH-----HTT--HH
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCccCCHH------------------------------HHHHHHHH-----hCCChHH
Confidence 456666799999999988866532 22211 11111111 1234666
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHH
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHN 138 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~ 138 (658)
|...+-. ......|+..||+++|..|++.+..
T Consensus 148 fVa~~Ya-~~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 148 FVAWCYA-STNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHHHH-HTT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHHHH-HcCCCCCCCcCHHHHHHHHHHhccc
Confidence 6665543 3345568899999999999886553
No 46
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=94.91 E-value=0.09 Score=44.11 Aligned_cols=63 Identities=21% Similarity=0.422 Sum_probs=49.4
Q ss_pred hhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhcc
Q 006182 581 SSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSD 650 (658)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (658)
-+-|--|||-|+|-...|. -+-|-|. +. --+.+|+++.----+--+|++.|..|..|+|-|-.
T Consensus 25 ~trLvECGW~d~ik~mcrn----iimEkG~--~n-~tvdqL~AeitPkaRaLVPd~VKkEll~rirt~L~ 87 (92)
T KOG4479|consen 25 HTRLVECGWHDDIKEMCRN----IIMEKGV--DN-ITVDQLAAEITPKARALVPDVVKKELLLRIRTALD 87 (92)
T ss_pred HHHHHHcccHHHHHHHHHH----HHHHhcc--cc-ccHHHHHHHhCchhhhhchHHHHHHHHHHHHHHHH
Confidence 4668889999999776544 5677777 33 34678888887777778999999999999998754
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=87.95 E-value=0.23 Score=48.38 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=35.2
Q ss_pred EEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCCCCCC
Q 006182 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS 359 (658)
Q Consensus 298 ~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~~~~~ 359 (658)
++.|.-.|. ||.+.+.+. .+.||.+||+.+.+.++... -+|.|+.-+..|..
T Consensus 130 ~agi~~~g~----~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~Epl~ 181 (193)
T PF05408_consen 130 HAGIFLKGQ----EHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQEPLP 181 (193)
T ss_dssp EEEEEEEST----TEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESSSS-TT
T ss_pred hhHheecCC----cceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccCcccCC
Confidence 344555554 999999988 78899999999998754321 24778888776654
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=78.10 E-value=9.9 Score=37.35 Aligned_cols=22 Identities=41% Similarity=0.788 Sum_probs=15.9
Q ss_pred cccccCCCcchHHHHHHHHHcc
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYT 48 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~i 48 (658)
.|+.|.+|+||+||++|++...
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp E----SSSTHHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHHc
Confidence 5999999999999999998643
No 49
>PF14353 CpXC: CpXC protein
Probab=60.79 E-value=13 Score=34.34 Aligned_cols=49 Identities=20% Similarity=0.435 Sum_probs=28.3
Q ss_pred EEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccce
Q 006182 181 QVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 181 ~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~ 239 (658)
+++|+.|+...... ..-.++....+.+.+.|.. .+.. .+.|+.||....
T Consensus 1 ~itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~---g~l~----~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFE---VWTSINADEDPELKEKILD---GSLF----SFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHc---CCcC----EEECCCCCCcee
Confidence 36899999875432 1233444444455555432 2222 399999997543
No 50
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=45.00 E-value=19 Score=29.37 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=27.8
Q ss_pred CccccccCCccceeeEEEEEe--eCCceeEEEEeeeee
Q 006182 227 NKYKCDNCKKLVSARKQMSIL--QSPNILVIQLKRFEG 262 (658)
Q Consensus 227 nky~C~kC~~~~~a~K~~~I~--~lP~iLiI~LkRF~~ 262 (658)
+.+.|++|+...-.++..... .+-+++=||.++|-.
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 356799999877777775554 678899999999864
No 51
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=34.13 E-value=57 Score=37.76 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=42.2
Q ss_pred ceeEEEEeeeee----------ccC-CccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCC----------
Q 006182 251 NILVIQLKRFEG----------IFG-GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPD---------- 309 (658)
Q Consensus 251 ~iLiI~LkRF~~----------~~~-~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~---------- 309 (658)
.+|++.+.|-.. .+. .-.+.++++..++.+. ...|+|.+.|||.-...-
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 689999988532 111 2334556666666555 468999999999642111
Q ss_pred -CCeEEEEEEcCCCcEEEEeCceee
Q 006182 310 -SGHYYAYIKDAIGRWYCCNDSYVS 333 (658)
Q Consensus 310 -sGHYvayvr~~~~~Wy~fNDs~Vt 333 (658)
-|||+- ++.+.| |+++|-..|-
T Consensus 549 lkG~ytI-lfTe~G-pw~YDP~s~~ 571 (666)
T PF03292_consen 549 LKGYYTI-LFTEMG-PWMYDPLSIF 571 (666)
T ss_pred eceeEEE-EEecCC-ceeeCchhhc
Confidence 266654 555344 6666654443
No 52
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=29.64 E-value=69 Score=30.93 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.2
Q ss_pred EEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeee
Q 006182 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSV 334 (658)
Q Consensus 297 L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~ 334 (658)
..|+||+.+ .|++|..|- ++.||-+|-..-.+
T Consensus 99 ~~gfI~N~~-----~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLS-----RHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECT-----TEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEeccC-----cceEEEEee-CCeeEeccCCCCCC
Confidence 468899966 899998777 89999999755443
No 53
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=29.21 E-value=1.1e+02 Score=27.10 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred ccEEEEEEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeC
Q 006182 175 GGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 175 ~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~l 249 (658)
.|...++..|..|.+..........=..+ ....+++.|..--.-+..+. ..-.|++|+.......++.+.++
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~~--~~Kevd~vlgg~~a~~nv~~-t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKYP--KLKEVDDVLGGDEAWENVDQ-TEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeeccccC--chhhhhhhcCCcccccchhh-ccCcCCCCCCCceEEEEeeeccC
Confidence 44557889999999986533222221111 12345555543212222221 12589999987766666555544
No 54
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=26.30 E-value=66 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.985 Sum_probs=10.8
Q ss_pred EEEcCCCcEEEEeCc
Q 006182 316 YIKDAIGRWYCCNDS 330 (658)
Q Consensus 316 yvr~~~~~Wy~fNDs 330 (658)
+++. ++.||.|++.
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 5666 6899999875
Done!