Query 006182
Match_columns 658
No_of_seqs 284 out of 1375
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1E-60 3.5E-65 515.8 31.9 326 24-359 7-364 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 1.7E-59 6E-64 499.8 30.6 321 23-355 7-344 (348)
3 3i3t_A Ubiquitin carboxyl-term 100.0 3.3E-59 1.1E-63 499.1 26.6 320 23-356 1-353 (355)
4 2gfo_A Ubiquitin carboxyl-term 100.0 1.2E-58 4.2E-63 505.6 30.4 320 26-354 62-396 (396)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.5E-57 5E-62 489.6 29.6 295 22-356 3-317 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 9.1E-58 3.1E-62 498.2 25.5 324 18-357 6-397 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 4.7E-56 1.6E-60 487.3 27.5 307 12-354 9-414 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 1.3E-55 4.5E-60 492.2 30.8 312 23-354 139-474 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 8E-55 2.7E-59 491.6 28.0 296 22-357 172-487 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.5E-51 5E-56 486.7 28.5 291 26-354 344-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.9 1.4E-27 4.9E-32 252.0 8.6 227 23-329 6-308 (374)
12 3mhs_B Protein SUS1; multi-pro 97.4 0.00043 1.5E-08 59.7 8.4 70 573-651 22-91 (96)
13 4dhx_B Enhancer of yellow 2 tr 97.3 0.00062 2.1E-08 59.2 7.9 71 573-651 26-97 (101)
14 3mp2_A Non-structural protein 96.9 0.0088 3E-07 58.5 12.1 181 27-336 14-195 (211)
15 2fe8_A PP1AB, ORF1AB, replicas 95.9 0.031 1.1E-06 58.0 10.1 37 298-337 260-296 (315)
16 1qmy_A Protease, leader protea 70.1 2.1 7.1E-05 38.9 2.3 52 297-358 109-160 (167)
17 3c0t_B Mediator of RNA polymer 29.8 20 0.0007 23.3 1.2 17 591-607 11-27 (33)
18 1qmy_A Protease, leader protea 29.0 1.3E+02 0.0043 27.4 6.7 22 27-48 14-35 (167)
19 3e1k_B Lactose regulatory prot 28.9 21 0.00073 21.5 1.1 8 590-597 10-17 (22)
20 2do5_A Splicing factor 3B subu 28.6 24 0.00084 26.1 1.6 14 636-649 29-42 (58)
21 3a43_A HYPD, hydrogenase nicke 23.2 1.1E+02 0.0037 27.5 5.4 15 179-193 68-82 (139)
22 2oxg_Z SOXZ protein; immunoglo 22.4 1.5E+02 0.005 25.5 5.8 56 294-355 19-83 (108)
23 3bts_E Regulatory protein GAL4 21.8 36 0.0012 21.4 1.2 9 590-598 8-16 (26)
24 1v8h_A Sulfur oxidation protei 21.3 1.7E+02 0.0059 25.0 6.0 58 292-355 16-82 (107)
25 1zso_A Hypothetical protein; s 20.4 4.9E+02 0.017 24.0 9.3 87 229-339 71-158 (164)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-60 Score=515.84 Aligned_cols=326 Identities=29% Similarity=0.472 Sum_probs=269.6
Q ss_pred CCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccCh
Q 006182 24 GPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAP 103 (658)
Q Consensus 24 g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p 103 (658)
|+ +||.|+||||||||+||+|+++|+||++++........ ... .+.....++.+++..++..++......++|
T Consensus 7 g~-~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P 79 (367)
T 2y6e_A 7 GL-CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEI---NRD---NPLGMKGEIAEAYAELIKQMWSGRDAHVAP 79 (367)
T ss_dssp TC-CEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGC---CSS---CTTSCTTHHHHHHHHHHHHHTSSSCSEECC
T ss_pred CC-cCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhc---ccc---CCCCcchHHHHHHHHHHHHHHcCCCCCcCH
Confidence 44 99999999999999999999999999999986543221 001 111223457788888899998887789999
Q ss_pred HHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCC---------cccCCCCcccccc
Q 006182 104 AKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGE---------TINGGSSVVKEIF 174 (658)
Q Consensus 104 ~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~---------~~~~~~siI~~lF 174 (658)
..|..+++...+.|..++||||||||.+||+.|++++....+...... ....+..+. ......++|.++|
T Consensus 80 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~-~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F 158 (367)
T 2y6e_A 80 RMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLEL-KDANGRPDAVVAKEAWENHRLRNDSVIVDTF 158 (367)
T ss_dssp HHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCC-CCCCSCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccc-ccccCCchhHHHHHHHHHHHHhcCCcccccc
Confidence 999999999999999999999999999999999998765433111000 000000000 0112467899999
Q ss_pred ccEEEEEEEeCCCCCeeceeeeeeeEEeeccc-------------------hhhHHHHHHhhccccccCCCCccccccCC
Q 006182 175 GGALQSQVKCLACGAESNKVDEIMDISLDILN-------------------SCSLKEAMQKFFQPEVLDGNNKYKCDNCK 235 (658)
Q Consensus 175 ~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~-------------------~~sLed~L~~~~~~E~Leg~nky~C~kC~ 235 (658)
+|++.++++|..|+..+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+
T Consensus 159 ~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~ 238 (367)
T 2y6e_A 159 HGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK 238 (367)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTT
T ss_pred CcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCC
Confidence 99999999999999999999999999999975 25899999999999999999999999999
Q ss_pred ccceeeEEEEEeeCCceeEEEEeeeeecc--CCccceeEeccc-ccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCe
Q 006182 236 KLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGH 312 (658)
Q Consensus 236 ~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGH 312 (658)
+.+.+.|+..|.++|+||+|||+||.++. ..|+++.|.||. .|||.+|+.... .....|+|+|||+|.| +.++||
T Consensus 239 ~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GH 316 (367)
T 2y6e_A 239 KHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-ARPYVYDLIAVSNHYG-AMGVGH 316 (367)
T ss_dssp EEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-SCCCEEEEEEEEEEEC-SSSSCE
T ss_pred CCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-CCCceEEEEEEeecCC-CCCCCe
Confidence 99999999999999999999999999843 379999999996 799999987643 3467999999999999 589999
Q ss_pred EEEEEEcC-CCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCCCCCC
Q 006182 313 YYAYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS 359 (658)
Q Consensus 313 Yvayvr~~-~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~~~~~ 359 (658)
|+||+|+. +++||+|||+.|+++++++|.+..||||||+|.+..+..
T Consensus 317 Y~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~ 364 (367)
T 2y6e_A 317 YTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK 364 (367)
T ss_dssp EEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred eeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCC
Confidence 99999995 789999999999999999999999999999999876543
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.7e-59 Score=499.84 Aligned_cols=321 Identities=30% Similarity=0.495 Sum_probs=269.3
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHh-cCCCCcc
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL-SVDLTLD 101 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~i 101 (658)
.|+ +||.|+||||||||+||+|+++|+||++++........ .. ......++++++..++..++ ......+
T Consensus 7 ~g~-~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~-----~~---~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 77 (348)
T 3nhe_A 7 QGL-AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL-----HH---GSNAHTALVEEFAKLIQTIWTSSPNDVV 77 (348)
T ss_dssp CSC-CEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTS-----CS---SCCTTHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred CCC-CCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhh-----cc---CCCcccHHHHHHHHHHHHHHcCCCCCcc
Confidence 454 99999999999999999999999999999876443221 10 11133467888889998888 4555889
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCC--------CCCcccCCCCccccc
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGG--------GGETINGGSSVVKEI 173 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~--------~~~~~~~~~siI~~l 173 (658)
+|..|..++....+.|..++||||+|||.+||+.|++++.................. +........++|.++
T Consensus 78 ~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~ 157 (348)
T 3nhe_A 78 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDL 157 (348)
T ss_dssp CCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccc
Confidence 999999999999999999999999999999999999997654321111100000000 000123456789999
Q ss_pred cccEEEEEEEeCCCCCeeceeeeeeeEEeeccch----hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeC
Q 006182 174 FGGALQSQVKCLACGAESNKVDEIMDISLDILNS----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 174 F~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~----~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~l 249 (658)
|+|++.+.++|..|+..+.+.|+|++|+|+++.. .+|+++|+.|+.+|.++++|+|.|++|+....+.|+..|.++
T Consensus 158 F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~l 237 (348)
T 3nhe_A 158 FVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 237 (348)
T ss_dssp HCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEEC
T ss_pred cceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecC
Confidence 9999999999999999999999999999999873 499999999999999999999999999999999999999999
Q ss_pred CceeEEEEeeeeecc--CCccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEE
Q 006182 250 PNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWY 325 (658)
Q Consensus 250 P~iLiI~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy 325 (658)
|+||+|||+||.+.. ..|+.+.|.|| +.|||.+|+.... ....|+|+|||+|.| +..+|||+||+|++ +++||
T Consensus 238 P~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~--~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~ 314 (348)
T 3nhe_A 238 PKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT--NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWH 314 (348)
T ss_dssp CSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC--CCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEE
T ss_pred CceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC--CCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEE
Confidence 999999999998743 47999999999 6899999987543 467899999999999 78999999999984 68999
Q ss_pred EEeCceeeecchhhhcCCCeEEEEEEEcCC
Q 006182 326 CCNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (658)
Q Consensus 326 ~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~ 355 (658)
+|||+.|+++++++|.+.+||||||+|.+.
T Consensus 315 ~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 315 TFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp EEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred EEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 999999999999999999999999999864
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3.3e-59 Score=499.06 Aligned_cols=320 Identities=30% Similarity=0.487 Sum_probs=259.9
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCC-Ccc
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL-TLD 101 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~i 101 (658)
+|+ +||.|+||||||||+||+|+++|+||++++........ . ......++.+.+..++..++.... ..+
T Consensus 1 TG~-~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~v 70 (355)
T 3i3t_A 1 SGH-VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV-----P----GGGRAQELTEAFADVIGALWHPDSCEAV 70 (355)
T ss_dssp --C-CCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------------CHHHHHHHHHHHHTSSCSSCCCB
T ss_pred CCC-cCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhc-----C----CCCchhHHHHHHHHHHHHHhcCCCCCcc
Confidence 355 99999999999999999999999999999875543221 0 111234577888888888887654 789
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCC------CCCC----C-----------
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSG------GGGG----G----------- 160 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~------~~~~----~----------- 160 (658)
+|..|..++....+.|..++||||+|||.+||+.|++++....+..+....... .... .
T Consensus 71 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (355)
T 3i3t_A 71 NPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLM 150 (355)
T ss_dssp CCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHH
T ss_pred cHHHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999998654331111000000 0000 0
Q ss_pred --CcccCCCCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch------hhHHHHHHhhccccccCCCCccccc
Q 006182 161 --ETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS------CSLKEAMQKFFQPEVLDGNNKYKCD 232 (658)
Q Consensus 161 --~~~~~~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~------~sLed~L~~~~~~E~Leg~nky~C~ 232 (658)
.......++|.++|+|++.+.++|..|+..+.+.++|++|+|+++.. .+|+++|+.|+.+|.++++|+|.|+
T Consensus 151 ~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~ 230 (355)
T 3i3t_A 151 WKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCD 230 (355)
T ss_dssp HHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCS
T ss_pred HHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCC
Confidence 00122457899999999999999999999999999999999999863 4999999999999999999999999
Q ss_pred cCCccceeeEEEEEeeCCceeEEEEeeeeecc--CCccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeecCCCC
Q 006182 233 NCKKLVSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPD 309 (658)
Q Consensus 233 kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~ 309 (658)
+|+..+.+.|+..|.++|+||+|||+||.+.. ..|+...|.|| +.|||.+|+.... ....|+|+|||+|.| +.+
T Consensus 231 ~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~--~~~~Y~L~avv~H~G-~~~ 307 (355)
T 3i3t_A 231 RCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA--GSPVYQLYALCNHSG-SVH 307 (355)
T ss_dssp SSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC------CCEEEEEEEEEEEE-ETT
T ss_pred CCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC--CCcceEEEEEEEecC-CCC
Confidence 99999999999999999999999999999843 36999999999 6699999986543 467899999999999 799
Q ss_pred CCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCCC
Q 006182 310 SGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR 356 (658)
Q Consensus 310 sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~~ 356 (658)
+|||+||+|. .+.||+|||+.|+++++++|.+..||||||+|.+..
T Consensus 308 ~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 308 YGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEP 353 (355)
T ss_dssp EEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC---
T ss_pred CCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCC
Confidence 9999999999 567999999999999999999999999999998754
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.2e-58 Score=505.61 Aligned_cols=320 Identities=27% Similarity=0.464 Sum_probs=264.5
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHH
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK 105 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~ 105 (658)
++||.|+||||||||+||+|+++|+||++++........ .... ......++.+++..++..++......++|..
T Consensus 62 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~---~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~ 135 (396)
T 2gfo_A 62 LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDI---NRSN---LLGHKGEVAEEFGIIMKALWTGQYRYISPKD 135 (396)
T ss_dssp CCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHC---CTTC---TTSCTTHHHHHHHHHHHHHHHSCEEEECCHH
T ss_pred cccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhh---cccC---CCCcccHHHHHHHHHHHHHHcCCCceECHHH
Confidence 499999999999999999999999999999875442211 0011 1112234566777778888877778899999
Q ss_pred HHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCC---------CcccCCCCcccccccc
Q 006182 106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGG---------ETINGGSSVVKEIFGG 176 (658)
Q Consensus 106 l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~---------~~~~~~~siI~~lF~G 176 (658)
|+.++....+.|..++||||+|||.+||+.|++++........... ...+...+ .......++|.++|+|
T Consensus 136 f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~-~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G 214 (396)
T 2gfo_A 136 FKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKE-ENNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 214 (396)
T ss_dssp HHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC----------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhcccccccc-ccccccchhhHHHHHHHHhhhccCCccchhhCc
Confidence 9999999999999999999999999999999998764322111000 00000000 0012246789999999
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeeccc--hhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeE
Q 006182 177 ALQSQVKCLACGAESNKVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILV 254 (658)
Q Consensus 177 ~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~--~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLi 254 (658)
++.++++|..|+..+.+.|+|++|+|+|+. ..+|++||+.|+.+|.++++|+|.|++|+..+.+.|+..|.++|+||+
T Consensus 215 ~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLi 294 (396)
T 2gfo_A 215 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 294 (396)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEE
T ss_pred EEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEE
Confidence 999999999999999999999999999986 469999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeecc--CCccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcC-CCcEEEEeCc
Q 006182 255 IQLKRFEGIF--GGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDS 330 (658)
Q Consensus 255 I~LkRF~~~~--~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~-~~~Wy~fNDs 330 (658)
|||+||.++. ..|+.+.|.|| +.|||.+|+.... .....|+|+|||+|.| +.++|||+||+|+. +++||+|||+
T Consensus 295 ihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~ 372 (396)
T 2gfo_A 295 VHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPK-NNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDH 372 (396)
T ss_dssp EEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCC-SSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETT
T ss_pred EEecceeccCccceecCceEecchhhccccccccCCC-CCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCC
Confidence 9999999853 36999999999 5799999987532 3457899999999999 89999999999985 6899999999
Q ss_pred eeeecchhhhcCCCeEEEEEEEcC
Q 006182 331 YVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 331 ~Vt~v~~eev~s~~aYlLfY~R~~ 354 (658)
.|+++++++|.+..||||||+|.+
T Consensus 373 ~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 373 EVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EEEECCHHHHSCTTEEEEEEECC-
T ss_pred CeEECCHHHcCCCCceEEEEEEcC
Confidence 999999999999999999999874
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.5e-57 Score=489.62 Aligned_cols=295 Identities=27% Similarity=0.437 Sum_probs=254.6
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCcc
Q 006182 22 RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLD 101 (658)
Q Consensus 22 ~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i 101 (658)
..|+ +||.|+||||||||+||+|+++|+||++++...... . ....++.+++..+|..++.+. ..+
T Consensus 3 ~~g~-~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~ 67 (353)
T 1nb8_A 3 HTGY-VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPV 67 (353)
T ss_dssp CSSC-CCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-------S------CTTTCHHHHHHHHHHHHHHCS-SCB
T ss_pred CCCC-CCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-------C------cccccHHHHHHHHHHHHhhcC-CCC
Confidence 3455 999999999999999999999999999998653211 0 123457788888888888765 578
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEE
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~ 181 (658)
.|..|...+. .+.|..++||||+|||.+||+.|++++... ...++|.++|+|++.+.
T Consensus 68 ~~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~---------------------~~~s~i~~~F~g~~~~~ 124 (353)
T 1nb8_A 68 GTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSY 124 (353)
T ss_dssp CCHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS---------------------TTTTHHHHHHCEEEEEE
T ss_pred CCHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC---------------------CccchhhhhceeEEEEE
Confidence 8888887764 367888999999999999999999875321 12468999999999999
Q ss_pred EEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeee
Q 006182 182 VKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFE 261 (658)
Q Consensus 182 i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~ 261 (658)
++|..|+..+.+.|+|++|+|+|++..+|+++|..|+.+|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.
T Consensus 125 i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~ 203 (353)
T 1nb8_A 125 IQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFM 203 (353)
T ss_dssp EEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC
T ss_pred EEeccCCCeeceeeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEE
Confidence 999999999999999999999999999999999999999999999999999996 5678999999999999999999998
Q ss_pred ecc----CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEc-CCCcEEEEeCceeeecc
Q 006182 262 GIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVST 336 (658)
Q Consensus 262 ~~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~v~ 336 (658)
++. ..|+++.|.||..|||.+|+..........|+|+|||+|.| +.++|||+||+|+ .+++||+|||+.|++++
T Consensus 204 ~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 282 (353)
T 1nb8_A 204 YDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT 282 (353)
T ss_dssp --------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECC
T ss_pred EecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECC
Confidence 843 36999999999999999999875555678999999999999 5899999999996 57899999999999999
Q ss_pred hhhhcC---------------CCeEEEEEEEcCCC
Q 006182 337 LQEVLS---------------EKVYILFFIRANQR 356 (658)
Q Consensus 337 ~eev~s---------------~~aYlLfY~R~~~~ 356 (658)
+++|+. .+||||||+|.+..
T Consensus 283 ~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 283 KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp HHHHTGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred HHHHHHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 998873 57999999998764
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=9.1e-58 Score=498.15 Aligned_cols=324 Identities=20% Similarity=0.265 Sum_probs=256.1
Q ss_pred cccCCCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCC
Q 006182 18 EKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD 97 (658)
Q Consensus 18 ~~r~~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 97 (658)
+..+....|+||.|+||||||||+||+|+++|+||++|+........ .. ......+++++|..+|..++...
T Consensus 6 ~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~-----~~---~~~~~~~l~~~l~~lf~~l~~~~ 77 (404)
T 2ayn_A 6 QLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRA-----SG---EMASAQYITAALRDLFDSMDKTS 77 (404)
T ss_dssp -----CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC--------------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CC---CCCcccHHHHHHHHHHHHHhcCC
Confidence 33444667799999999999999999999999999999986543100 00 11134568899999999888765
Q ss_pred CCccChHHHHHHHHhhhhccCC------CCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccc
Q 006182 98 LTLDAPAKIQSCLRIFAEHFKC------GRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVK 171 (658)
Q Consensus 98 ~~~i~p~~l~~~L~~l~~~F~~------g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~ 171 (658)
..+.|..|+.+|+...+.|.+ ++||||+|||.+||+.|++++..... ....+......+........++|.
T Consensus 78 -~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~s~i~ 154 (404)
T 2ayn_A 78 -SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED--DSVKETDSSSASAATPSKKKSLID 154 (404)
T ss_dssp -SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCC--C------------------CCHHH
T ss_pred -CcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccC--CcccccchhhhhhhhccccCchhh
Confidence 789999999999999888984 89999999999999999998643211 000000000011112234568999
Q ss_pred cccccEEEEEEEeCCCCCee--ceeeeeeeEEeeccch-hhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEee
Q 006182 172 EIFGGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQ 248 (658)
Q Consensus 172 ~lF~G~l~s~i~C~~C~~~S--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~ 248 (658)
++|+|++.++++|..|+..+ .+.|+|++|+|+|+.. .+|+++|+.|+. |.++ |.|++|+....+.|+..|.+
T Consensus 155 ~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~ 229 (404)
T 2ayn_A 155 QFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISR 229 (404)
T ss_dssp HHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEE
T ss_pred hhccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhh
Confidence 99999999999999999995 7899999999999974 689999999986 4454 89999999999999999999
Q ss_pred CCceeEEEEeeeeecc----CCccceeEecccccccchhcccCC------------------------------------
Q 006182 249 SPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS------------------------------------ 288 (658)
Q Consensus 249 lP~iLiI~LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~------------------------------------ 288 (658)
+|+||+|||+||.++. ..|+.+.|.||..|||.+|+....
T Consensus 230 lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (404)
T 2ayn_A 230 LPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEV 309 (404)
T ss_dssp CCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC--------------------
T ss_pred CCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccc
Confidence 9999999999999853 379999999999999999986420
Q ss_pred ------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCC-------eEEEE
Q 006182 289 ------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEK-------VYILF 349 (658)
Q Consensus 289 ------------~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~-------aYlLf 349 (658)
......|+|+|||+|.|.++++|||+||+|+.+++||+|||+.|+++++++|+... |||||
T Consensus 310 ~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLf 389 (404)
T 2ayn_A 310 KYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLL 389 (404)
T ss_dssp --CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEE
T ss_pred cccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEE
Confidence 12347899999999999779999999999998899999999999999999998755 99999
Q ss_pred EEEcCCCC
Q 006182 350 FIRANQRP 357 (658)
Q Consensus 350 Y~R~~~~~ 357 (658)
|+|.+...
T Consensus 390 Y~r~~~~~ 397 (404)
T 2ayn_A 390 YGPRRVEI 397 (404)
T ss_dssp EECC----
T ss_pred EEecCCCC
Confidence 99987643
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=4.7e-56 Score=487.27 Aligned_cols=307 Identities=20% Similarity=0.285 Sum_probs=247.6
Q ss_pred CCCccccccC-CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCc-hhhhhccCChHHHHHHH
Q 006182 12 QPSLLSEKRK-RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSA-LDAERKRECPFCILEKR 89 (658)
Q Consensus 12 ~~~~~~~~r~-~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~ 89 (658)
++.++.+.+. ....|+||.|+||||||||+||+|+++|+||++|+.......+ ... ........+++++|..+
T Consensus 9 ~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~l 83 (415)
T 1vjv_A 9 HHHHPEQQVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV-----SNSGAQDEEIHKQIVIEMKRC 83 (415)
T ss_dssp ----------CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCC-----SCTTSTTHHHHHHHHHHHHHH
T ss_pred ccCChhhcccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccccccc-----CCcccccccchhHHHHHHHHH
Confidence 3444444433 3566799999999999999999999999999999986653221 100 00011244789999999
Q ss_pred HHHHhcCCCCccChHHHHHHHHhhhhccC-------CCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCc
Q 006182 90 IVRSLSVDLTLDAPAKIQSCLRIFAEHFK-------CGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGET 162 (658)
Q Consensus 90 l~~l~~~~~~~i~p~~l~~~L~~l~~~F~-------~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~ 162 (658)
|..++......+.|..|+.+|....+.|. .++||||+|||.+||+.|+.++..
T Consensus 84 f~~l~~~~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------------------- 143 (415)
T 1vjv_A 84 FENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------------------- 143 (415)
T ss_dssp HHHHHCC-CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH--------------------
T ss_pred HHHHhcCCCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc--------------------
Confidence 99999877789999999999999989998 689999999999999999998632
Q ss_pred ccCCCCccccccccEEEEEEEeCCCCCee--ceeeeeeeEEeeccch-hhHHHHHHhhccccccCCCCccccccCCccce
Q 006182 163 INGGSSVVKEIFGGALQSQVKCLACGAES--NKVDEIMDISLDILNS-CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVS 239 (658)
Q Consensus 163 ~~~~~siI~~lF~G~l~s~i~C~~C~~~S--~~~E~f~~LsL~i~~~-~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~ 239 (658)
++|.++|+ .+.+.++|..|+..+ .+.|+|++|+|+|+.. .+|+++|+.|+.. .++ |.|++|+....
T Consensus 144 -----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~ 212 (415)
T 1vjv_A 144 -----KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSI 212 (415)
T ss_dssp -----HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCC
T ss_pred -----chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCccc
Confidence 57899999 999999999999997 5899999999999975 5899999999874 344 79999999999
Q ss_pred eeEEEEEeeCCceeEEEEeeeeecc----CCccceeEecccccccchhcccCC---------------------------
Q 006182 240 ARKQMSILQSPNILVIQLKRFEGIF----GGKIDKAIAFEEVLVLSSFMCKAS--------------------------- 288 (658)
Q Consensus 240 a~K~~~I~~lP~iLiI~LkRF~~~~----~~Ki~~~V~fP~~LdL~~~~~~~~--------------------------- 288 (658)
+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 213 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~ 292 (415)
T 1vjv_A 213 YSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKR 292 (415)
T ss_dssp EEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhh
Confidence 9999999999999999999999853 279999999999999999986410
Q ss_pred -----------------------------------------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEEc--
Q 006182 289 -----------------------------------------------QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-- 319 (658)
Q Consensus 289 -----------------------------------------------~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-- 319 (658)
......|+|+|||+|.|.++.+|||+||+|+
T Consensus 293 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~ 372 (415)
T 1vjv_A 293 RKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDEL 372 (415)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSS
T ss_pred ccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCC
Confidence 1234789999999999977999999999998
Q ss_pred CCCcEEEEeCceeeecchhhhcCCC-------eEEEEEEEcC
Q 006182 320 AIGRWYCCNDSYVSVSTLQEVLSEK-------VYILFFIRAN 354 (658)
Q Consensus 320 ~~~~Wy~fNDs~Vt~v~~eev~s~~-------aYlLfY~R~~ 354 (658)
.+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 373 ~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 373 DENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp CTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 6799999999999999999998754 9999999975
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.3e-55 Score=492.16 Aligned_cols=312 Identities=30% Similarity=0.552 Sum_probs=261.8
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCC----
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDL---- 98 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~---- 98 (658)
.|. +||.|+||||||||+||+|+++|+||++++...+...+ . ......|+.+++..++..++....
T Consensus 139 ~G~-~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~-----~----~~~~~~~l~~~l~~l~~~l~~~~~~~~~ 208 (476)
T 3mhs_A 139 DGL-SGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNC-----K----VRSPDKCFSCALDKIVHELYGALNTKQA 208 (476)
T ss_dssp TCC-CCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHC-----S----SCCTTTCHHHHHHHHHHHHHSCCCC---
T ss_pred CCC-CCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhc-----c----CCCcccchHHHHHHHHHHHhhccccccc
Confidence 355 99999999999999999999999999999875543322 1 112456788999999988886432
Q ss_pred -----CccChHHHHHHHH---hhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCcc
Q 006182 99 -----TLDAPAKIQSCLR---IFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVV 170 (658)
Q Consensus 99 -----~~i~p~~l~~~L~---~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI 170 (658)
....|..+...+. ...+.|..++||||+|||.+||+.|++++.......... .........++|
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~--------~~~~~~~~~s~i 280 (476)
T 3mhs_A 209 SSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV--------SRANNKQCECIV 280 (476)
T ss_dssp -----CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC---------------CCCSCCSHH
T ss_pred ccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccc--------cccccccCCCcc
Confidence 2456666665554 678899999999999999999999999876543211000 011123456899
Q ss_pred ccccccEEEEEEEeCCCCCeec-eeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeC
Q 006182 171 KEIFGGALQSQVKCLACGAESN-KVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQS 249 (658)
Q Consensus 171 ~~lF~G~l~s~i~C~~C~~~S~-~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~l 249 (658)
.++|+|.+.+.++|..|+..+. +.++|++|+|++++..+|+++|+.|+.+|.+++.+ |.|++|+..+.+.|+..|.++
T Consensus 281 ~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~l 359 (476)
T 3mhs_A 281 HTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKL 359 (476)
T ss_dssp HHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEB
T ss_pred eeecceEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccC
Confidence 9999999999999999999975 58999999999999999999999999999999755 999999999999999999999
Q ss_pred CceeEEEEeeeeecc---CCccceeEecccccccchhcccCCC--------CCCCcEEEEEEEEeecCCCCCCeEEEEEE
Q 006182 250 PNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKASQ--------DPQPEYKLFGTIVHSGFSPDSGHYYAYIK 318 (658)
Q Consensus 250 P~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~~--------~~~~~Y~L~aVIvH~G~s~~sGHYvayvr 318 (658)
|+||+|||+||.+.. ..|+++.|.||..|||.+|+..... .....|+|+|||+|.| +.++|||+||+|
T Consensus 360 P~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr 438 (476)
T 3mhs_A 360 PSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCK 438 (476)
T ss_dssp CSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEE
T ss_pred CcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEE
Confidence 999999999999743 3699999999999999999886543 2456799999999999 699999999999
Q ss_pred cCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcC
Q 006182 319 DAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 319 ~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~ 354 (658)
..+++||+|||+.|+++++++|+..+||||||+|++
T Consensus 439 ~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 439 ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 888999999999999999999999999999999975
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=8e-55 Score=491.60 Aligned_cols=296 Identities=27% Similarity=0.436 Sum_probs=254.5
Q ss_pred CCCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCcc
Q 006182 22 RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLD 101 (658)
Q Consensus 22 ~~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i 101 (658)
..|+ +||.|+||||||||+||+|+++|+||++++...... . ....++.+++.++|..++... ..+
T Consensus 172 ~~g~-~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-------~------~~~~~~~~~l~~lf~~l~~~~-~~~ 236 (522)
T 2f1z_A 172 HTGY-VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-------D------DSSKSVPLALQRVFYELQHSD-KPV 236 (522)
T ss_dssp TTSC-CCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-------S------CTTTCHHHHHHHHHHHHHHCS-SCB
T ss_pred cCCc-cceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-------C------cccchHHHHHHHHHHHHhcCC-Ccc
Confidence 3454 999999999999999999999999999997653211 0 123457788888888888765 577
Q ss_pred ChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEE
Q 006182 102 APAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQ 181 (658)
Q Consensus 102 ~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~ 181 (658)
.|..|+..+. .+.|..++||||+|||.+||+.|+.++... ...++|.++|+|++.+.
T Consensus 237 ~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~---------------------~~~s~i~~lF~G~~~s~ 293 (522)
T 2f1z_A 237 GTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMVSY 293 (522)
T ss_dssp CCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS---------------------TTTTHHHHHHCEEEEEE
T ss_pred CcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC---------------------ccccchhhheeEEEEEE
Confidence 8888877654 367888999999999999999999876321 12468999999999999
Q ss_pred EEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeee
Q 006182 182 VKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFE 261 (658)
Q Consensus 182 i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~ 261 (658)
++|..|++.+.+.|+|++|+|+|++..+|+++|..|+..|.++++++|.|+.|+ .+.+.|+..|.++|+||+|||+||.
T Consensus 294 i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~ 372 (522)
T 2f1z_A 294 IQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFM 372 (522)
T ss_dssp ECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEE
T ss_pred EEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEE
Confidence 999999999999999999999999999999999999999999999999999996 5788999999999999999999999
Q ss_pred ecc----CCccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEc-CCCcEEEEeCceeeecc
Q 006182 262 GIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKD-AIGRWYCCNDSYVSVST 336 (658)
Q Consensus 262 ~~~----~~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~-~~~~Wy~fNDs~Vt~v~ 336 (658)
++. ..|+++.|.||..|||.+|+..........|+|+|||+|.| +.++|||+||+|+ .+++||+|||+.|++++
T Consensus 373 ~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 451 (522)
T 2f1z_A 373 YDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT 451 (522)
T ss_dssp ECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECC
T ss_pred EcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECC
Confidence 853 36999999999999999999875545678999999999999 5899999999996 57899999999999999
Q ss_pred hhhhcC---------------CCeEEEEEEEcCCCC
Q 006182 337 LQEVLS---------------EKVYILFFIRANQRP 357 (658)
Q Consensus 337 ~eev~s---------------~~aYlLfY~R~~~~~ 357 (658)
+++|+. .+||||||+|.+...
T Consensus 452 ~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~ 487 (522)
T 2f1z_A 452 KEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS 487 (522)
T ss_dssp HHHHSTTSSCCC--------CEEEEEEEEEETTSHH
T ss_pred HHHHHHhhcCCCccccccCcCCceEEEEEEECCchH
Confidence 999874 579999999988643
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=486.67 Aligned_cols=291 Identities=27% Similarity=0.356 Sum_probs=250.5
Q ss_pred CcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCC--------
Q 006182 26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVD-------- 97 (658)
Q Consensus 26 pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-------- 97 (658)
++||.|+||||||||+||+|+++|+||++|+........ . .......++.+++.+++..++...
T Consensus 344 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~-----~---~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~ 415 (854)
T 3ihp_A 344 YTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQ-----N---APTDPTQDFSTQVAKLGHGLLSGEYSKPVPES 415 (854)
T ss_dssp CCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHH-----H---CCSCGGGCHHHHHHHHHHHHHSCC--------
T ss_pred ccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhc-----c---ccCCccccHHHHHHHHHHHHhccccccccccc
Confidence 499999999999999999999999999999854321110 0 011244578889999888887632
Q ss_pred ------------CCccChHHHHHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccC
Q 006182 98 ------------LTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETING 165 (658)
Q Consensus 98 ------------~~~i~p~~l~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (658)
...+.|..|..++....+.|..++||||+|||.+||+.|+.++.
T Consensus 416 ~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~------------------------ 471 (854)
T 3ihp_A 416 GDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR------------------------ 471 (854)
T ss_dssp -------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT------------------------
T ss_pred cccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc------------------------
Confidence 35899999999999999999999999999999999999998752
Q ss_pred CCCccccccccEEEEEEEeCCCCCeeceeeeeeeEEeeccch--------------------------------hhHHHH
Q 006182 166 GSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNS--------------------------------CSLKEA 213 (658)
Q Consensus 166 ~~siI~~lF~G~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~--------------------------------~sLed~ 213 (658)
..+.|.++|+|.+.++++|..|+.++.+.++|++|+|+|+.. .+|++|
T Consensus 472 ~~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dc 551 (854)
T 3ihp_A 472 SSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSC 551 (854)
T ss_dssp TSCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHH
T ss_pred ccCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHH
Confidence 135789999999999999999999999999999999999853 389999
Q ss_pred HHhhccccccCCCCccccccCCccceeeEEEEEeeCCceeEEEEeeeeecc---CCccceeEecccccccchhcccCC--
Q 006182 214 MQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIF---GGKIDKAIAFEEVLVLSSFMCKAS-- 288 (658)
Q Consensus 214 L~~~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~---~~Ki~~~V~fP~~LdL~~~~~~~~-- 288 (658)
|+.|+.+|.+++ |.|++|+..+.+.|+..|.++|+||+|||+||.++. ..|+++.|.||..|||.+|+....
T Consensus 552 L~~f~~~E~Le~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~ 628 (854)
T 3ihp_A 552 LEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQP 628 (854)
T ss_dssp HHHHHSCEEEEE---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCT
T ss_pred HHHhcCceEeee---eeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCC
Confidence 999999999997 999999999999999999999999999999999832 369999999999999999966311
Q ss_pred --------------------------------------------------------------------------------
Q 006182 289 -------------------------------------------------------------------------------- 288 (658)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (658)
T Consensus 629 ~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~ 708 (854)
T 3ihp_A 629 GEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 708 (854)
T ss_dssp TCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC----
T ss_pred CceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006182 289 -------------------------------------------------------------------------------- 288 (658)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (658)
T Consensus 709 ~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (854)
T 3ihp_A 709 PGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGP 788 (854)
T ss_dssp ----------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------C
T ss_pred ccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccC
Confidence
Q ss_pred --CCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcC
Q 006182 289 --QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354 (658)
Q Consensus 289 --~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~ 354 (658)
.+....|+|+|||+|.|.+.++|||+||+|. +++||+|||+.|+++ ++.....||||||+|.+
T Consensus 789 ~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 789 KVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp CCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred CCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 0011269999999999988899999999999 799999999999997 45567899999999986
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=251.99 Aligned_cols=227 Identities=22% Similarity=0.306 Sum_probs=151.7
Q ss_pred CCCCcccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccC
Q 006182 23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA 102 (658)
Q Consensus 23 ~g~pvGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~ 102 (658)
.|.|.||.|+||||||||.||+|+.+|++++.|+........ .. ....+...+.+.+...++. ..+.
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-----~~------~~~~l~~~L~r~i~~~Lrk--~~~~ 72 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-----VE------YYSETQELLRTEIVNPLRI--YGYV 72 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-----CT------THHHHHHHHHHTTHHHHHH--TSEE
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-----ch------hHHHHHHHHHHHHHHHHhh--cCCC
Confidence 477899999999999999999999999999999987542110 00 0001334442444444443 6788
Q ss_pred hHHHHHHHHhhhhccCC-----CCcCcHHHHHHHHHHHHHHH-hhhhhhhccCCCCCCCCCCCCCcccCCCCcccccccc
Q 006182 103 PAKIQSCLRIFAEHFKC-----GRQEDAHEFLRYVIDACHNT-CLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGG 176 (658)
Q Consensus 103 p~~l~~~L~~l~~~F~~-----g~QqDA~EFl~~LLd~L~~e-l~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G 176 (658)
|..++..|+...+.|.. .+||||.|||..|+..|... .. . +..... .....+.+.++|.-
T Consensus 73 P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~-l-kl~s~~------------~~~~~~~~~q~f~E 138 (374)
T 2vhf_A 73 CATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPL-L-KIRSAG------------QKVQDCYFYQIFME 138 (374)
T ss_dssp CHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCS-E-EEEETT------------CCCEEESCEECCCC
T ss_pred cHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccc-c-cccccc------------ccccccHHHHHhcC
Confidence 99999999998888764 58999999999999988753 10 0 000000 00111456666650
Q ss_pred EEEEEEEeCCCCCeeceeeeeeeEEeeccchhhHHHHHHh-hccccccCCCCccccccCCccceeeEEEEEeeCCceeEE
Q 006182 177 ALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQK-FFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVI 255 (658)
Q Consensus 177 ~l~s~i~C~~C~~~S~~~E~f~~LsL~i~~~~sLed~L~~-~~~~E~Leg~nky~C~kC~~~~~a~K~~~I~~lP~iLiI 255 (658)
..+. .. ..+++++++. |+. +| +.|.++|++|+|
T Consensus 139 ----------------~~e~---~~-----~e~~~qL~e~nfl~----~g------------------ikisrLP~yLtV 172 (374)
T 2vhf_A 139 ----------------KNEK---VG-----VPTIQQLLEWSFIN----SN------------------LKFAEAPSCLII 172 (374)
T ss_dssp ----------------CC-----CC-----CCBHHHHHHHHHHH----HT------------------EEESSCCSEEEE
T ss_pred ----------------cccc---cC-----CcHHHHhhhHHHHH----cC------------------CeeecCCcceEE
Confidence 0000 00 2234444433 222 11 229999999999
Q ss_pred EEeeeeeccCCccceeEecccccccchhcccCC--------------------------C--------------------
Q 006182 256 QLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKAS--------------------------Q-------------------- 289 (658)
Q Consensus 256 ~LkRF~~~~~~Ki~~~V~fP~~LdL~~~~~~~~--------------------------~-------------------- 289 (658)
|+.||. ...|+-+.|.||.+||+.+++.++. .
T Consensus 173 q~vRFg--KkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (374)
T 2vhf_A 173 QMPRFG--KDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLN 250 (374)
T ss_dssp ECCCCS--SSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTT
T ss_pred eeeccC--ccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhc
Confidence 999993 4469999999999999998875421 0
Q ss_pred ---------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEEc--CCCcEEEEeC
Q 006182 290 ---------------------DPQPEYKLFGTIVHSGFSPDSGHYYAYIKD--AIGRWYCCND 329 (658)
Q Consensus 290 ---------------------~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~--~~~~Wy~fND 329 (658)
.+...|+|+|||+ +++|||+||||. .+++|+.||-
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 251 HKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred ccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126899999999 677999999998 5799999986
No 12
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=97.43 E-value=0.00043 Score=59.71 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccCCCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 006182 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 651 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (658)
.+.|++--..-|..|||.|+|...-|+.=|.. ...+.++|=..+.-.|. ..||++.|.+|+.++|.|-++
T Consensus 22 ~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~-----~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 22 YELISNELKARLLQEGWVDKVKDLTKSEMNIN-----ESTNFTQILSTVEPKAL----EMVSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-----TCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc-----CCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 34455555667999999999999888754433 45578887777766664 569999999999999999754
No 13
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00062 Score=59.25 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhhccchHHHHHHHHhhhhhhhhccC-CCCChhHHHHHHHHhhhhhhcccCchhHHHHHHHHHHhhccC
Q 006182 573 EEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVG-ITPGDIDLKKLLIRDAKSTFLSQIPNSLKDDLVKHLRSFSDG 651 (658)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (658)
.+.|++.-..-|.-|||.|+|...-|.. +++.| ...+.++|=..+.--|. ..||++.|.+|+.|+|.|-++
T Consensus 26 ~erL~~lL~~rL~EcGW~Devr~~~r~~----i~~~g~~~vt~~~L~~~I~P~Ar----~~VP~~VK~Ell~rIr~fL~~ 97 (101)
T 4dhx_B 26 RERLKELLRAKLIECGWKDQLKAHCKEV----IKEKGLEHVTVDDLVAEITPKGR----ALVPDSVKKELLQRIRTFLAQ 97 (101)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHH----HHHHCTTTCCHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHH----HHHcCCCCCCHHHHHHHHhHHHH----HHCCHHHHHHHHHHHHHHHHH
Confidence 3445555556789999999999887763 33345 35688887777666664 569999999999999999754
No 14
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.85 E-value=0.0088 Score=58.52 Aligned_cols=181 Identities=16% Similarity=0.238 Sum_probs=101.1
Q ss_pred cccccCCCcchHHHHHHHHHccHHHHHHHHhccccchhhhccCCCchhhhhccCChHHHHHHHHHHHhcCCCCccChHHH
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKI 106 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~p~~l 106 (658)
+=|+=.-|+||+||++-+|-++... .. ++ ...+ ..-+|..|
T Consensus 14 ~vLkq~dNNCwVNaa~l~LQ~~~~~------~~-------------------------~a---w~~f-----~~Gd~~~f 54 (211)
T 3mp2_A 14 IILKQGDNNCWINACCYQLQAFDFF------NN-------------------------EA---WEKF-----KKGDVMDF 54 (211)
T ss_dssp EEECCCTTCHHHHHHHHHHTTCTTC------CC-------------------------HH---HHHH-----TTTCCHHH
T ss_pred EEEEccCCCcHHHHHHHHHHhcChh------HH-------------------------HH---HHHH-----hCCChHHH
Confidence 3455556999999999888666543 00 00 0011 23356666
Q ss_pred HHHHHhhhhccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccccEEEEEEEeCC
Q 006182 107 QSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLA 186 (658)
Q Consensus 107 ~~~L~~l~~~F~~g~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~siI~~lF~G~l~s~i~C~~ 186 (658)
...+-.+. ....|+..||+++|..|+..+. ...+.....|.
T Consensus 55 V~~~Ya~~-~~~~G~~gDa~~~L~~Ll~~~~-------------------------------------~a~~v~~~~C~- 95 (211)
T 3mp2_A 55 VNLCYAAT-TLARGHSGDAEYLLELMLNDYS-------------------------------------TAKIVLAAKCG- 95 (211)
T ss_dssp HHHHHHHH-TCCTTSCCCHHHHHHHHHTTCC-------------------------------------CEEEEEEEEET-
T ss_pred HHHHHHHc-CCCCCCCcCHHHHHHHHHHhhc-------------------------------------cceEEEEEEEc-
Confidence 66555432 4556889999999999973211 12345567888
Q ss_pred CCCeeceeeeeeeEEeeccchhhHHHHHHhhccccccCCCCcc-ccccCCccceeeEEEEEeeCCceeEEEEeeeeeccC
Q 006182 187 CGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKY-KCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265 (658)
Q Consensus 187 C~~~S~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~Leg~nky-~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~ 265 (658)
|+.. .+.+....+.+... . ... .| .|..|+.... .++.+.|-.++|.=
T Consensus 96 Cg~~---~~~~~G~v~~~~~~-----------~-~~~----~~g~C~~c~~~~~----~~v~~v~Gt~i~~~-------- 144 (211)
T 3mp2_A 96 CGEK---EIVLERAVFKLTPL-----------K-ESF----NYGVCGDCMQVNT----CRFLSVEGSGVFVH-------- 144 (211)
T ss_dssp TEEE---EEEEEESEEESCCB-----------S-SCE----EEEECTTTCCEEE----EEEEEEEEEEEEEE--------
T ss_pred CCCc---eEEEeeeEEEEEee-----------e-cCC----CceECCCCCceeE----EEEEEeeeeEEEEc--------
Confidence 8873 23333333333220 0 111 25 8999986432 23334443333320
Q ss_pred CccceeEecccccccchhcccCCCCCCCcEEEEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecc
Q 006182 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVST 336 (658)
Q Consensus 266 ~Ki~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~ 336 (658)
. ..|..++.....-. -.+-+++.| +.++|||+.+.... + +.+|-..+.+++
T Consensus 145 ----~--~~~~~v~~~~~~v~----------~~~~~vF~G-~~~~GHY~~~~~~~-~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 145 ----D--ILSKQTPEAMFVVK----------PVMHAVYTG-TTQNGHYMVDDIEH-G--YCVDGMGIKPLK 195 (211)
T ss_dssp ----E--EECSCCCGGGBSSC----------CSEEEEEES-CTTTCEEEEEETTT-T--EEEETTEEECCC
T ss_pred ----C--CCCcccccccceee----------ceeEEEEEc-CCCCceEEEEeccc-c--eEEeCCceeEcc
Confidence 0 12333333322211 124567799 78999999997663 2 889999988886
No 15
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=95.86 E-value=0.031 Score=58.02 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.7
Q ss_pred EEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecch
Q 006182 298 FGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTL 337 (658)
Q Consensus 298 ~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~ 337 (658)
++..++.| +..+|||+.+... ... |++|-..+.+++.
T Consensus 260 ~~a~vF~G-~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTG-NYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEES-CGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEEEC-CCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 34455689 6789999998875 222 8999999988863
No 16
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=70.10 E-value=2.1 Score=38.92 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=34.1
Q ss_pred EEEEEEeecCCCCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCCCCC
Q 006182 297 LFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPV 358 (658)
Q Consensus 297 L~aVIvH~G~s~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~~~~ 358 (658)
.+|-|.-.|. +|-+-++-. +..||.+||+...+..... .=+|+|.--++.|.
T Consensus 109 fhAgIflkg~----eHAVFa~~T-S~GWyaiDDe~fypwtPdp-----sdVLVfvPyDqEpl 160 (167)
T 1qmy_A 109 FHAGIFLKGQ----EHAVFACVT-SNGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQEPL 160 (167)
T ss_dssp EEEEEEEETT----TEEEEEECC-TTSSEEEETTEEEECCCCG-----GGEEEEEECC----
T ss_pred hhhheeecCC----CceEEEEEc-cCceEEecccccccCCCCh-----hhEEEEccCCcccc
Confidence 3555666665 898887777 7789999999999875322 12467776666553
No 17
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=29.82 E-value=20 Score=23.28 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhhhhc
Q 006182 591 EKVLSYMRSRKRQCAHE 607 (658)
Q Consensus 591 ~~~~~~~~~~~~~~~~~ 607 (658)
-++.+||.|-||..+.+
T Consensus 11 tdilsfmksgkraaale 27 (33)
T 3c0t_B 11 TDILSFMKSGKRAAALE 27 (33)
T ss_dssp HHHHHHHHHCCCCGGGC
T ss_pred HHHHHHHHcchHHHHHH
Confidence 46889999999987765
No 18
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=28.98 E-value=1.3e+02 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.7
Q ss_pred cccccCCCcchHHHHHHHHHcc
Q 006182 27 LGLRNLGNSCYLNSVLQCLTYT 48 (658)
Q Consensus 27 vGL~NlGNTCYlNSvLQ~L~~i 48 (658)
.|+.|..++||+|++||+...+
T Consensus 14 ys~pN~hdncWLNtilQLfryv 35 (167)
T 1qmy_A 14 YSRPNNHDNAWLNAILQLFRYV 35 (167)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHH
T ss_pred ccCCCCCcchHHHHHHHHHHHc
Confidence 5899999999999999998754
No 19
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=28.90 E-value=21 Score=21.51 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=6.8
Q ss_pred hHHHHHHH
Q 006182 590 SEKVLSYM 597 (658)
Q Consensus 590 ~~~~~~~~ 597 (658)
+|+||+|+
T Consensus 10 mddvynyl 17 (22)
T 3e1k_B 10 MDDVYNYI 17 (26)
T ss_pred HHHHHHHh
Confidence 78999986
No 20
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.58 E-value=24 Score=26.12 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhhc
Q 006182 636 SLKDDLVKHLRSFS 649 (658)
Q Consensus 636 ~~~~~~~~~~~~~~ 649 (658)
.-+|.||+||++|-
T Consensus 29 g~REElvdRLk~Y~ 42 (58)
T 2do5_A 29 GNREELVERLQSYT 42 (58)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 44899999999993
No 21
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=23.24 E-value=1.1e+02 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.2
Q ss_pred EEEEEeCCCCCeece
Q 006182 179 QSQVKCLACGAESNK 193 (658)
Q Consensus 179 ~s~i~C~~C~~~S~~ 193 (658)
.-...|.+||+....
T Consensus 68 p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 68 EAVFKCRNCNYEWKL 82 (139)
T ss_dssp CCEEEETTTCCEEEG
T ss_pred CCcEECCCCCCEEec
Confidence 346789999988543
No 22
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=22.40 E-value=1.5e+02 Score=25.52 Aligned_cols=56 Identities=14% Similarity=0.027 Sum_probs=42.6
Q ss_pred cEEEEEEEEeecCC--C-------CCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCC
Q 006182 294 EYKLFGTIVHSGFS--P-------DSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (658)
Q Consensus 294 ~Y~L~aVIvH~G~s--~-------~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~ 355 (658)
..++...|.|-=.+ . --.||+..+.- .+||..|-.+++...++++||+-|+-+-..
T Consensus 19 ~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~------~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~ 83 (108)
T 2oxg_Z 19 TVTVKALISHKMESGQRKDADGKLIPRSIINRFTC------ELNGVNVVDVAIDPAVSTNPYFEFDAKVDA 83 (108)
T ss_dssp EEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEEEECTTBCSSCEEEEEEEECS
T ss_pred CEEEEEEeECCCccccccCcCCCccchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 56677778874221 1 12789888774 479999999999999999999999988643
No 23
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=21.82 E-value=36 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.6
Q ss_pred hHHHHHHHH
Q 006182 590 SEKVLSYMR 598 (658)
Q Consensus 590 ~~~~~~~~~ 598 (658)
+|+||+|+-
T Consensus 8 MDDvyNylF 16 (26)
T 3bts_E 8 MDDVYNYLF 16 (26)
T ss_pred HHHHHHHhc
Confidence 799999974
No 24
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=21.33 E-value=1.7e+02 Score=24.98 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCcEEEEEEEEeecCC---------CCCCeEEEEEEcCCCcEEEEeCceeeecchhhhcCCCeEEEEEEEcCC
Q 006182 292 QPEYKLFGTIVHSGFS---------PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQ 355 (658)
Q Consensus 292 ~~~Y~L~aVIvH~G~s---------~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~eev~s~~aYlLfY~R~~~ 355 (658)
....++...|.|-=.+ .--.||+..+.- .+||..|-.+++...++++||+-|+-+-..
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~------~~ng~~v~~~~~~~~iS~nP~~~F~~~~~~ 82 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV------YFEGEKVAEARPGPSTSANPLYAFKFKAEK 82 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEECCCSSCCSSCEEEEEEECCS
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 3466777788884322 112789888874 489999999999999999999999988753
No 25
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.36 E-value=4.9e+02 Score=23.97 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=42.5
Q ss_pred cccccCCccceeeEEEEEeeCCceeEEEEeeeeeccCCccceeEecc-cccccchhcccCCCCCCCcEEEEEEEEeecCC
Q 006182 229 YKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFE-EVLVLSSFMCKASQDPQPEYKLFGTIVHSGFS 307 (658)
Q Consensus 229 y~C~kC~~~~~a~K~~~I~~lP~iLiI~LkRF~~~~~~Ki~~~V~fP-~~LdL~~~~~~~~~~~~~~Y~L~aVIvH~G~s 307 (658)
++|..|++...+. |...|.+ ..+......|....+.|. .-|.+..|.. ...|... +
T Consensus 71 ~KCk~C~re~Si~----i~~~~~~-----~~y~~~d~~k~~~i~~FDCRGlEp~eF~p------~~~w~a~--------~ 127 (164)
T 1zso_A 71 IKWTEYPKYSTIN----FVNTKNS-----CSYEEVNNNEWRDFASFECRGIELIDFFP------SNNFIVE--------D 127 (164)
T ss_dssp ECCSSSSCCEEEE----EECCTTT-----TEEEGGGTTSCEEEEEEEEESEEEEEECC------CSCEEEE--------E
T ss_pred EeccccCCcceEE----EEeCCCC-----cccccccCCCceEEEEEECCCeeeEEEec------CCcEEEE--------E
Confidence 6899998654433 4444421 012112223444555554 3344443322 1224333 2
Q ss_pred CCCCeEEEEEEcCCCcEEEEeCceeeecchhh
Q 006182 308 PDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQE 339 (658)
Q Consensus 308 ~~sGHYvayvr~~~~~Wy~fNDs~Vt~v~~ee 339 (658)
..+| -+.-|--.++.|+-||+..-.+|+..+
T Consensus 128 ~esG-~f~dvDLse~eW~DYDEk~~~~VsI~e 158 (164)
T 1zso_A 128 TKGK-LYYDVNLSDQNWCDYNEEHEMCVGIYN 158 (164)
T ss_dssp TTSC-EEEEECCTTSCEEEEETTTTEEEEEEE
T ss_pred CCCC-cEEeeecCCCceeccccCCCCeEEEEE
Confidence 4567 222232245789999997666655433
Done!