BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006183
         (657 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
           Prestin (Anion Transporter Slc26a5)
          Length = 143

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 507 PNTVAMGNIPGTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYLQXXXXXXXXXXXX 566
           P+   +G +P T +Y  ++ Y E   +    I  + +PIY+ANS                
Sbjct: 2   PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYS-------SALKR 54

Query: 567 XXXANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQ 626
               N    +  +ILD T V  +D+ G+  +  + K      + + LA     V   L  
Sbjct: 55  KTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTS 114

Query: 627 SKVLESFGLNG-LYLTVGEAV 646
           ++  E+  L   L+ ++ +AV
Sbjct: 115 NRFFENPALKELLFHSIHDAV 135


>pdb|3MGL|A Chain A, Crystal Structure Of Permease Family Protein From Vibrio
           Cholerae
 pdb|3MGL|B Chain B, Crystal Structure Of Permease Family Protein From Vibrio
           Cholerae
 pdb|4DGH|A Chain A, Structure Of Sulp Transporter Stas Domain From Vibrio
           Cholerae Refined To 1.9 Angstrom Resolution
 pdb|4DGH|B Chain B, Structure Of Sulp Transporter Stas Domain From Vibrio
           Cholerae Refined To 1.9 Angstrom Resolution
          Length = 130

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 538 ILAVESPIYFANSTYLQXXXXXXXXXXXXXXXANNESTLKCIILDMTAVTAIDTSGIDMV 597
           + A+E P +FA +   +                + + T + +IL +  V   D +GI  +
Sbjct: 23  VYALEGPFFFAAAETFERVX------------GSIQETPQILILRLKWVPFXDITGIQTL 70

Query: 598 CELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALWKAQP 657
            E  +   K+ ++++++     V++KL ++ +++  G   +Y     A++      +AQP
Sbjct: 71  EEXIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQP 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,522,378
Number of Sequences: 62578
Number of extensions: 546617
Number of successful extensions: 1396
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 6
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)