Query 006183
Match_columns 657
No_of_seqs 416 out of 2340
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 3E-110 6E-115 947.3 47.2 619 31-654 13-648 (665)
2 TIGR00815 sulP high affinity s 100.0 3E-101 6E-106 870.8 56.5 560 82-645 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 1.6E-92 3.4E-97 786.2 53.1 547 77-654 3-552 (554)
4 PRK11660 putative transporter; 100.0 1E-91 2.2E-96 793.1 55.3 524 85-652 19-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 3.9E-48 8.4E-53 402.8 18.0 279 194-472 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 7E-27 1.5E-31 255.1 32.6 330 106-477 11-363 (406)
7 PRK10720 uracil transporter; P 99.9 1.1E-25 2.5E-30 245.6 31.8 355 106-508 30-414 (428)
8 TIGR00801 ncs2 uracil-xanthine 99.9 2.2E-25 4.9E-30 243.2 31.1 334 105-476 20-378 (415)
9 COG2252 Xanthine/uracil/vitami 99.9 1.5E-24 3.3E-29 229.6 31.4 381 76-502 5-406 (436)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 7.5E-26 1.6E-30 188.1 7.4 83 81-163 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 4.2E-22 9.1E-27 217.5 31.7 328 95-462 29-372 (429)
12 PRK11412 putative uracil/xanth 99.9 1.8E-19 3.8E-24 195.6 34.0 333 105-467 23-372 (433)
13 COG2233 UraA Xanthine/uracil p 99.9 7.4E-20 1.6E-24 195.6 26.1 311 126-465 57-375 (451)
14 PF00860 Xan_ur_permease: Perm 99.8 1.2E-18 2.7E-23 189.2 28.5 339 97-467 2-364 (389)
15 PF01740 STAS: STAS domain; I 99.8 6.1E-19 1.3E-23 158.7 7.0 117 527-645 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 9.6E-17 2.1E-21 141.8 10.4 102 532-646 5-106 (106)
17 cd07041 STAS_RsbR_RsbS_like Su 99.7 2.3E-16 5E-21 140.1 10.3 103 532-646 7-109 (109)
18 cd06844 STAS Sulphate Transpor 99.6 3.7E-15 8E-20 130.2 10.2 93 531-633 4-96 (100)
19 TIGR00843 benE benzoate transp 99.6 1.5E-12 3.1E-17 138.6 30.5 341 97-496 22-392 (395)
20 TIGR00834 ae anion exchange pr 99.6 1.4E-12 3.1E-17 150.3 31.0 350 97-455 370-791 (900)
21 TIGR00377 ant_ant_sig anti-ant 99.5 2.4E-13 5.3E-18 120.3 9.1 100 532-644 9-108 (108)
22 KOG1172 Na+-independent Cl/HCO 99.4 3.8E-11 8.2E-16 135.2 28.0 337 111-455 375-767 (876)
23 cd07042 STAS_SulP_like_sulfate 99.4 1.4E-12 3.1E-17 114.8 11.2 101 531-640 5-105 (107)
24 PF03594 BenE: Benzoate membra 99.4 4.7E-10 1E-14 117.4 29.6 274 177-497 87-377 (378)
25 cd07043 STAS_anti-anti-sigma_f 99.3 1.5E-11 3.2E-16 106.7 10.2 90 533-633 6-95 (99)
26 COG1366 SpoIIAA Anti-anti-sigm 99.3 3.3E-11 7.2E-16 108.4 10.6 99 536-647 14-112 (117)
27 PF00955 HCO3_cotransp: HCO3- 99.2 1.2E-11 2.5E-16 136.0 2.6 349 100-456 37-473 (510)
28 PF13466 STAS_2: STAS domain 99.1 5.4E-10 1.2E-14 93.2 8.2 80 539-630 1-80 (80)
29 KOG1292 Xanthine/uracil transp 99.0 2.9E-08 6.3E-13 105.7 21.0 299 126-454 54-390 (510)
30 COG3135 BenE Uncharacterized p 98.9 1E-06 2.3E-11 90.5 25.6 273 177-496 102-391 (402)
31 PF11840 DUF3360: Protein of u 97.9 0.0098 2.1E-07 62.0 25.2 249 181-468 145-418 (492)
32 COG3113 Predicted NTP binding 97.7 0.00019 4.1E-09 60.7 7.5 84 538-633 13-96 (99)
33 PF11964 SpoIIAA-like: SpoIIAA 92.5 0.069 1.5E-06 46.8 1.8 106 535-651 1-109 (109)
34 PRK10720 uracil transporter; P 90.9 1.2 2.5E-05 49.4 9.7 53 376-428 261-313 (428)
35 PF13344 Hydrolase_6: Haloacid 90.8 0.46 1E-05 41.3 5.1 72 579-652 1-77 (101)
36 TIGR00815 sulP high affinity s 90.2 6 0.00013 45.5 15.0 111 338-454 14-142 (563)
37 PF14213 DUF4325: Domain of un 89.5 2.2 4.7E-05 34.7 7.8 66 549-626 2-70 (74)
38 TIGR03173 pbuX xanthine permea 89.0 16 0.00035 40.1 16.8 111 103-230 225-345 (406)
39 KOG3040 Predicted sugar phosph 88.2 0.72 1.6E-05 44.8 4.6 75 575-651 6-85 (262)
40 PRK11412 putative uracil/xanth 86.7 20 0.00044 39.7 15.6 118 99-233 242-370 (433)
41 COG0659 SUL1 Sulfate permease 86.4 8.1 0.00018 44.2 12.6 107 341-453 24-142 (554)
42 TIGR00801 ncs2 uracil-xanthine 85.3 17 0.00038 40.0 14.3 117 99-232 236-363 (415)
43 PF09345 DUF1987: Domain of un 81.3 6.2 0.00014 34.1 6.9 70 536-613 9-81 (99)
44 COG2233 UraA Xanthine/uracil p 77.1 8 0.00017 42.7 7.8 159 263-439 175-340 (451)
45 PRK11660 putative transporter; 74.6 53 0.0011 37.8 14.1 169 330-500 274-445 (568)
46 COG1296 AzlC Predicted branche 73.3 1E+02 0.0022 31.2 14.0 54 92-150 9-65 (238)
47 COG5439 Uncharacterized conser 73.0 6.6 0.00014 33.1 4.4 42 576-617 46-88 (112)
48 PRK09928 choline transport pro 72.2 45 0.00097 38.9 12.5 29 587-615 547-575 (679)
49 TIGR03616 RutG pyrimidine util 69.6 28 0.00061 38.5 10.0 109 103-229 253-371 (429)
50 PRK02261 methylaspartate mutas 68.7 44 0.00095 30.7 9.5 73 575-655 54-136 (137)
51 PF00860 Xan_ur_permease: Perm 67.8 7.4 0.00016 42.5 5.0 20 438-457 343-362 (389)
52 KOG2882 p-Nitrophenyl phosphat 66.5 17 0.00037 37.7 6.8 76 576-652 22-102 (306)
53 TIGR01452 PGP_euk phosphoglyco 66.0 11 0.00024 39.0 5.6 74 576-651 2-80 (279)
54 PRK10444 UMP phosphatase; Prov 64.3 15 0.00032 37.4 6.1 74 576-651 1-79 (248)
55 TIGR00640 acid_CoA_mut_C methy 63.4 1.2E+02 0.0026 27.6 13.0 70 576-653 54-127 (132)
56 PLN02645 phosphoglycolate phos 62.1 28 0.0006 36.7 7.8 73 576-650 28-105 (311)
57 TIGR01458 HAD-SF-IIA-hyp3 HAD- 61.6 12 0.00026 38.3 4.8 74 576-651 1-83 (257)
58 TIGR01457 HAD-SF-IIA-hyp2 HAD- 58.7 18 0.00039 36.8 5.5 73 577-651 2-79 (249)
59 PF13788 DUF4180: Domain of un 58.2 1.4E+02 0.0029 26.6 10.1 100 534-648 4-112 (113)
60 TIGR01684 viral_ppase viral ph 58.0 23 0.0005 36.9 6.1 60 574-633 124-189 (301)
61 TIGR00822 EII-Sor PTS system, 54.9 2E+02 0.0043 29.6 12.2 128 95-223 42-190 (265)
62 TIGR00843 benE benzoate transp 53.7 1.2E+02 0.0025 33.2 10.8 104 340-446 22-142 (395)
63 cd02071 MM_CoA_mut_B12_BD meth 52.2 54 0.0012 29.2 6.9 68 575-650 50-121 (122)
64 COG0573 PstC ABC-type phosphat 50.9 3.2E+02 0.007 28.8 15.6 59 83-142 63-138 (310)
65 TIGR01459 HAD-SF-IIA-hyp4 HAD- 49.8 52 0.0011 33.1 7.2 74 575-650 7-85 (242)
66 PF00916 Sulfate_transp: Sulfa 48.9 1.5E+02 0.0033 30.3 10.7 131 334-465 146-276 (280)
67 PRK10669 putative cation:proto 48.2 2.6E+02 0.0057 32.0 13.5 57 549-630 424-480 (558)
68 TIGR01501 MthylAspMutase methy 47.7 48 0.001 30.4 5.8 61 591-654 63-133 (134)
69 cd07019 S49_SppA_1 Signal pept 47.4 69 0.0015 31.6 7.5 67 535-612 1-74 (211)
70 cd07023 S49_Sppa_N_C Signal pe 46.0 78 0.0017 31.1 7.6 65 536-611 2-69 (208)
71 PRK09757 PTS system N-acetylga 41.2 3.7E+02 0.008 27.8 11.7 29 195-223 163-191 (267)
72 COG0647 NagD Predicted sugar p 40.9 53 0.0012 33.9 5.6 77 576-653 8-89 (269)
73 cd00394 Clp_protease_like Case 40.6 56 0.0012 30.5 5.4 57 538-605 1-57 (161)
74 TIGR00706 SppA_dom signal pept 40.4 1.1E+02 0.0023 30.1 7.6 58 536-605 2-59 (207)
75 COG0786 GltS Na+/glutamate sym 39.8 2.1E+02 0.0046 31.0 9.9 43 181-223 7-53 (404)
76 PRK03659 glutathione-regulated 39.6 2.5E+02 0.0054 32.6 11.5 75 551-650 409-483 (601)
77 PHA03398 viral phosphatase sup 39.4 67 0.0015 33.6 6.0 60 574-633 126-191 (303)
78 cd07022 S49_Sppa_36K_type Sign 39.1 1.1E+02 0.0024 30.3 7.4 32 574-606 41-72 (214)
79 PRK11475 DNA-binding transcrip 38.9 87 0.0019 30.9 6.6 59 576-636 38-99 (207)
80 COG1137 YhbG ABC-type (unclass 38.4 1.1E+02 0.0024 30.3 6.9 52 575-629 157-208 (243)
81 PF03609 EII-Sor: PTS system s 38.0 4.4E+02 0.0095 26.6 11.8 127 95-222 42-190 (238)
82 COG4618 ArpD ABC-type protease 38.0 87 0.0019 35.2 6.8 75 574-650 489-563 (580)
83 PF04206 MtrE: Tetrahydrometha 37.1 3.4E+02 0.0075 27.3 10.1 89 119-223 51-143 (269)
84 PRK11778 putative inner membra 36.3 2.9E+02 0.0062 29.5 10.3 70 533-613 89-159 (330)
85 TIGR01686 FkbH FkbH-like domai 34.7 67 0.0015 33.9 5.5 60 574-633 1-78 (320)
86 COG1433 Uncharacterized conser 34.6 1.2E+02 0.0026 27.3 6.1 49 600-651 57-106 (121)
87 PRK10692 hypothetical protein; 32.6 1.1E+02 0.0023 25.7 4.9 44 94-139 7-58 (92)
88 COG1121 ZnuC ABC-type Mn/Zn tr 32.3 1.2E+02 0.0027 30.9 6.5 43 574-617 156-198 (254)
89 TIGR02230 ATPase_gene1 F0F1-AT 30.0 84 0.0018 27.2 4.2 42 263-304 52-93 (100)
90 cd07021 Clp_protease_NfeD_like 29.8 1E+02 0.0022 29.7 5.3 47 536-593 1-47 (178)
91 TIGR01113 mtrE N5-methyltetrah 29.4 5.9E+02 0.013 25.9 10.3 89 119-223 51-143 (283)
92 COG0244 RplJ Ribosomal protein 28.6 2.4E+02 0.0053 27.0 7.6 67 576-649 23-93 (175)
93 PRK03562 glutathione-regulated 28.6 5.6E+02 0.012 29.9 12.1 42 575-631 423-464 (621)
94 PF10762 DUF2583: Protein of u 28.3 1.3E+02 0.0029 25.0 4.7 44 94-139 7-58 (89)
95 PRK00972 tetrahydromethanopter 28.0 6.6E+02 0.014 25.7 10.4 88 119-223 58-149 (292)
96 TIGR01662 HAD-SF-IIIA HAD-supe 28.0 1.1E+02 0.0023 27.2 4.9 54 577-630 1-73 (132)
97 PF00072 Response_reg: Respons 27.4 3.3E+02 0.0071 22.7 7.8 70 546-634 28-99 (112)
98 PF06800 Sugar_transport: Suga 27.4 6.5E+02 0.014 26.0 10.8 122 88-209 36-172 (269)
99 PHA00736 hypothetical protein 27.0 3.2E+02 0.0068 21.6 6.4 48 113-160 4-52 (79)
100 PRK09426 methylmalonyl-CoA mut 26.8 9.6E+02 0.021 28.6 13.5 72 575-654 633-708 (714)
101 TIGR01460 HAD-SF-IIA Haloacid 26.8 1.1E+02 0.0023 30.8 5.1 71 579-651 1-77 (236)
102 cd02067 B12-binding B12 bindin 26.3 4.4E+02 0.0094 22.9 10.0 65 575-650 50-118 (119)
103 cd03412 CbiK_N Anaerobic cobal 26.2 2.6E+02 0.0056 25.1 7.0 54 590-651 12-67 (127)
104 PF02579 Nitro_FeMo-Co: Dinitr 26.0 1.8E+02 0.0038 24.0 5.6 48 600-650 45-93 (94)
105 PF03818 MadM: Malonate/sodium 25.8 2.2E+02 0.0048 22.2 5.2 17 291-307 41-57 (60)
106 TIGR02717 AcCoA-syn-alpha acet 25.0 5.8E+02 0.012 28.4 10.9 94 540-653 342-444 (447)
107 TIGR01672 AphA HAD superfamily 24.8 2.7E+02 0.0059 28.1 7.5 36 597-632 119-160 (237)
108 PF07894 DUF1669: Protein of u 24.6 1.5E+02 0.0032 30.8 5.6 71 541-629 125-198 (284)
109 PRK04596 minC septum formation 24.2 3.3E+02 0.0072 27.7 7.9 75 548-630 28-103 (248)
110 cd05797 Ribosomal_L10 Ribosoma 23.7 3.5E+02 0.0076 25.1 7.7 49 576-631 20-68 (157)
111 cd02072 Glm_B12_BD B12 binding 23.5 1.5E+02 0.0032 27.0 4.8 60 587-649 57-126 (128)
112 TIGR01664 DNA-3'-Pase DNA 3'-p 23.0 1.3E+02 0.0027 28.5 4.5 56 575-630 12-94 (166)
113 PF11340 DUF3142: Protein of u 22.1 5.4E+02 0.012 24.9 8.4 78 534-617 5-83 (181)
114 COG1030 NfeD Membrane-bound se 22.0 1.6E+02 0.0034 32.5 5.5 65 534-613 26-90 (436)
115 cd00851 MTH1175 This uncharact 21.9 2.2E+02 0.0048 23.9 5.6 47 600-649 55-102 (103)
116 cd00379 Ribosomal_L10_P0 Ribos 21.7 3.7E+02 0.0081 24.7 7.5 62 552-631 5-66 (155)
117 PF14188 DUF4311: Domain of un 21.7 1.2E+02 0.0027 28.6 3.9 22 95-116 88-114 (213)
118 COG2450 Uncharacterized conser 21.6 2.4E+02 0.0053 25.4 5.6 37 577-613 65-101 (124)
119 COG0053 MMT1 Predicted Co/Zn/C 21.5 6.8E+02 0.015 26.3 10.1 27 538-564 250-276 (304)
120 KOG0236 Sulfate/bicarbonate/ox 21.5 1.4E+03 0.03 27.0 14.0 121 83-221 311-440 (665)
121 cd01948 EAL EAL domain. This d 21.3 4.2E+02 0.0091 25.8 8.3 97 535-631 116-226 (240)
122 PF03641 Lysine_decarbox: Poss 21.3 2.3E+02 0.0051 25.6 5.8 58 592-649 62-133 (133)
123 PF00466 Ribosomal_L10: Riboso 21.1 1.8E+02 0.0039 24.7 4.7 48 576-630 21-68 (100)
124 PLN00124 succinyl-CoA ligase [ 21.0 3.1E+02 0.0067 30.4 7.6 72 574-651 344-418 (422)
125 PRK09410 ulaA PTS system ascor 20.7 7.1E+02 0.015 27.8 10.3 108 125-232 155-282 (452)
126 COG1269 NtpI Archaeal/vacuolar 20.5 5.6E+02 0.012 30.2 10.0 118 94-222 374-499 (660)
127 PRK04125 murein hydrolase regu 20.2 83 0.0018 29.1 2.5 16 284-299 29-44 (141)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-110 Score=947.26 Aligned_cols=619 Identities=40% Similarity=0.669 Sum_probs=556.9
Q ss_pred cceeecCCCCCchHHHHHHhccccccCCCchhhhhccc--hhHHHHHHHHhhccccccCCCCCh-hhhHhhHHHHHHHHH
Q 006183 31 EIHSVCLPPKKTTLQKLKHRLSEIFFPDDPLYRFKNQQ--WCKKLILALQFLFPILQWGPDYNL-KLFRSDIISGLTIAS 107 (657)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Pi~~wl~~y~~-~~l~~Di~aGltv~~ 107 (657)
..+.++.|+.++..++.++..+++...+++.++++++. ++.++.+.++++||+++|+|+|++ +++.+|++||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 13 SRASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred ccccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 45666777777777777888888776677788877765 456789999999999999999999 789999999999999
Q ss_pred HHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCC---ChHHHHHHHHHHH
Q 006183 108 LAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQ---DPILYLELAFTAT 184 (657)
Q Consensus 108 ~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~~~~~~ 184 (657)
+++||+||||++||+||+|||||+|+|+++|++||||||+++||+|++|+|+++++++..++.. ++..+.++++++|
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988886654333 4456789999999
Q ss_pred HHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHH---HHHHhccCCcchhHH
Q 006183 185 FFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVM---SSVFNQRDEWSWKTV 261 (657)
Q Consensus 185 ~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 261 (657)
|++|++|++||+|||||+++|+|+|++.||++|+|++++.+|+|.++|+++.+.+.+....+ .+.+.+.+++ |.++
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATL 251 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhh
Confidence 99999999999999999999999999999999999999999999999999666555544433 3344444444 7899
Q ss_pred HHHHHHHHHHHHHHH-hhhcCCcccccccchhHHHHHHHHHHHHHhccCCC-CeeEeecCCCCCCCCCCCCCCCChhhHH
Q 006183 262 VMGFSFLVFLLTTRQ-ISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAH-GISIIGHLPKGLNPPSSNMLSFNGPFLA 339 (657)
Q Consensus 262 ~ig~~~l~~ll~~~~-~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~-~v~~vg~ip~g~~~p~~p~~~~~~~~~~ 339 (657)
+++++++++++..|. ..+++++++|+|.|+++++++++|+++|.++.++. ...+++++|.|+|+|++|.+++..
T Consensus 252 ~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~---- 327 (665)
T KOG0236|consen 252 VLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP---- 327 (665)
T ss_pred hhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----
Confidence 999999999999994 44555666679999999999999999999998764 556667999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHH
Q 006183 340 VAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVM 419 (657)
Q Consensus 340 ~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~ 419 (657)
..+..++.+++++++|+++++|+++++++|++|.||||+|+|++|++||||+|||+++++|||++|.++|+|||++++++
T Consensus 328 ~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~ 407 (665)
T KOG0236|consen 328 QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVS 407 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHH
Confidence 56666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhh-ccCHHHHHHHhhcCccceehhhhhhhhheecccchhhHHHHHHHHH
Q 006183 420 ASAVLVTLLFLMPLFYYTPNVILAAIIITAVIG-LIDYQAAFRLWKVDKLDFLACSCSFFGVLFISVPLGLAIAVGVSVF 498 (657)
Q Consensus 420 a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~k~~~~d~~i~~~t~~~~~~~~~~~Gl~~gv~~sl~ 498 (657)
++++++++++++|+|+|+|+|+||+|+++++.+ +++.++++++||.+|.|+++|++|++++++.+++.|+++|+++|++
T Consensus 408 ~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~ 487 (665)
T KOG0236|consen 408 AALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLF 487 (665)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccceeeeccccCCccccchhhhhhhhccCceEEEEEccceeEechHHHHHHH--HHHHHHHHH---HHhhccC
Q 006183 499 KILLHVTRPNTVAMGNIPGTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYLQERI--LRWIREEEE---WIEANNE 573 (657)
Q Consensus 499 ~~l~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i--~~~i~~~~~---~~~~~~~ 573 (657)
.+++|.+||++..+|++++++.|++.+||+++++.++++|+|+++|++|.|.+.+++++ .+++++.+. ..++...
T Consensus 488 ~ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (665)
T KOG0236|consen 488 FIILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHE 567 (665)
T ss_pred HHHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887 355554311 1111222
Q ss_pred CCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHH
Q 006183 574 STLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALW 653 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l 653 (657)
++.+++|+||+.+++||++|+.+|+++.+++++++++++++|++++++++|+++++.+.++++++|+|++||++.|+.++
T Consensus 568 ~~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~ 647 (665)
T KOG0236|consen 568 NSIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSEL 647 (665)
T ss_pred CcceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhh
Confidence 34899999999999999999999999999999999999999999999999999999899999999999999999999887
Q ss_pred h
Q 006183 654 K 654 (657)
Q Consensus 654 ~ 654 (657)
+
T Consensus 648 ~ 648 (665)
T KOG0236|consen 648 S 648 (665)
T ss_pred h
Confidence 5
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=3e-101 Score=870.80 Aligned_cols=560 Identities=44% Similarity=0.768 Sum_probs=522.4
Q ss_pred cccccCCCCChhhhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHH
Q 006183 82 PILQWGPDYNLKLFRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGS 161 (657)
Q Consensus 82 Pi~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~ 161 (657)
|+++|+|+|+++++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCC
Q 006183 162 MLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQ 241 (657)
Q Consensus 162 ~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~ 241 (657)
++.+++.+......+.+++.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988644433346788899999999999999999999999999999999999999999999999999999986433456
Q ss_pred hHHHHHHHHhccCCc---chhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeec
Q 006183 242 FIPVMSSVFNQRDEW---SWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGH 318 (657)
Q Consensus 242 ~~~~~~~~~~~~~~~---~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ 318 (657)
+++.+.+.+.+++++ ||.+++++++++++++..+++++|+++..+.+.|.+++++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777788777665 99999999999999999998888888877778889999999999999999888899999999
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccc
Q 006183 319 LPKGLNPPSSNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGS 398 (657)
Q Consensus 319 ip~g~~~p~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s 398 (657)
+|.|+|.+..|.++| ..+...++.++.+++++++|+++++|++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~~--~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLDW--ELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 999998777776554 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhcCCCchhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCccceehhhhhhh
Q 006183 399 FSRSAVNYNAGAQSAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDFLACSCSFF 478 (657)
Q Consensus 399 ~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~i~~~t~~ 478 (657)
++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+++++++++||.++.|+.+|+++++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheecccchhhHHHHHHHHHHHHHHhhccceeeeccccCCccccchhhhhhhhccCceEEEEEccceeEechHHHHHHHH
Q 006183 479 GVLFISVPLGLAIAVGVSVFKILLHVTRPNTVAMGNIPGTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYLQERIL 558 (657)
Q Consensus 479 ~~~~~~~~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i~ 558 (657)
+++++|++.|+++|+++|++.+++|.+||+..+++++++++.|||.++++++++.++++|+|++|+|+|+|++++++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999998
Q ss_pred HHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCccc
Q 006183 559 RWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGL 638 (657)
Q Consensus 559 ~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~i 638 (657)
+.++++.+ ++++.++.+++|+||++|+++|+||+++|.++.++++++|+++++++.++++++.|+++|+.+.++++++
T Consensus 479 ~~~~~~~~--~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~ 556 (563)
T TIGR00815 479 KRIEDETR--RELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEHF 556 (563)
T ss_pred HHHhhhcc--ccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCcce
Confidence 87664211 1122235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHH
Q 006183 639 YLTVGEA 645 (657)
Q Consensus 639 f~tv~~A 645 (657)
|+|+|||
T Consensus 557 f~s~~~A 563 (563)
T TIGR00815 557 FPSVSDA 563 (563)
T ss_pred eCChhhC
Confidence 9999986
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-92 Score=786.18 Aligned_cols=547 Identities=31% Similarity=0.514 Sum_probs=513.2
Q ss_pred HHhhccccccCCCCChhhhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHH
Q 006183 77 LQFLFPILQWGPDYNLKLFRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIAS 156 (657)
Q Consensus 77 ~~~~~Pi~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~s 156 (657)
+.+++|..+|.+.|+.+|+++|++||+|+|++++||+||||..||+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCcccc
Q 006183 157 LVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHF 236 (657)
Q Consensus 157 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~ 236 (657)
++++..+.+.. +.+++.++++++++|++|+++|++|||++++|+|+||+.||++|+|+.|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998543 345889999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCChHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCC--CCee
Q 006183 237 TSKMQFIPVMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKA--HGIS 314 (657)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~--~~v~ 314 (657)
.. .+...+..++++..++||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+. +| .
T Consensus 157 ~~--~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 VS--GFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred cc--chHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 42 377788889999999999999999999999999987776666 68999999999999998764 66 7
Q ss_pred EeecCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcc
Q 006183 315 IIGHLPKGLNPPSSNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYV 394 (657)
Q Consensus 315 ~vg~ip~g~~~p~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p 394 (657)
+.|++|.++|.+.+|++++ +.+.+.++.++.+++++++|++.++++++.++|++.|.||||+|+|++|++++||||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~~--~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVSL--SLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 8899999999999998874 77889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHh-hcCccceehh
Q 006183 395 TTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLW-KVDKLDFLAC 473 (657)
Q Consensus 395 ~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~-k~~~~d~~i~ 473 (657)
+||+++||++|.++|+|||+|++++|+++++++++++|+++|||+|+|++++++++++|++|..++.++ |.+|.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998854 5899999999
Q ss_pred hhhhhhheecccchhhHHHHHHHHHHHHHHhhccceeeeccccCCccccchhhhhhhhccCceEEEEEccceeEechHHH
Q 006183 474 SCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTVAMGNIPGTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYL 553 (657)
Q Consensus 474 ~~t~~~~~~~~~~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~ 553 (657)
+++++++++.+++.|+.+|+++|++.+++|.+||+...+++.++.+. ++.++++..+..|++.++|++||++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999999988887665 67778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcccc
Q 006183 554 QERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESF 633 (657)
Q Consensus 554 ~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~ 633 (657)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+..+..
T Consensus 463 ~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i 531 (554)
T COG0659 463 ERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLV 531 (554)
T ss_pred HHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccccc
Confidence 9999886543 37899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCHHHHHHHHHHHHh
Q 006183 634 GLNGLYLTVGEAVADISALWK 654 (657)
Q Consensus 634 ~~~~if~tv~~Av~~~~~~l~ 654 (657)
+.+++|+++++|++.++...+
T Consensus 532 ~~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 532 GAEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred ccccccchhHHHHHHHHHHhc
Confidence 988999999999999886553
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1e-91 Score=793.14 Aligned_cols=524 Identities=21% Similarity=0.363 Sum_probs=473.2
Q ss_pred ccCCCCChhhhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHh
Q 006183 85 QWGPDYNLKLFRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLG 164 (657)
Q Consensus 85 ~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~ 164 (657)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.+++++++.+.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHH
Q 006183 165 EAVSYSQDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIP 244 (657)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~ 244 (657)
+.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++......++++
T Consensus 99 ~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 543 34566789999999999999999999999999999999999999999999999999985443457888
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeec------
Q 006183 245 VMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGH------ 318 (657)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~------ 318 (657)
.+.+++++++++||.++++|++++++++.++++.+|.| .++++++++|++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~ 241 (568)
T PRK11660 170 KVGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVL 241 (568)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccccc
Confidence 89999999999999999999999999988776555444 6799999999999999877677777765
Q ss_pred --------CCCCCCCCCCCC---------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHH
Q 006183 319 --------LPKGLNPPSSNM---------LSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIG 381 (657)
Q Consensus 319 --------ip~g~~~p~~p~---------~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~G 381 (657)
+|.++|.+.+|. .+++.+.+.+.++.++.+++++++|++.+++.+++++++++|.||||+|+|
T Consensus 242 ~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G 321 (568)
T PRK11660 242 ADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQG 321 (568)
T ss_pred cccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHh
Confidence 666666655552 123456777888999999999999999999999999999999999999999
Q ss_pred HhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhccCHHHHHH
Q 006183 382 FMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFR 461 (657)
Q Consensus 382 i~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~ 461 (657)
++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|++++.+++
T Consensus 322 ~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~ 401 (568)
T PRK11660 322 LGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD 401 (568)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred Hhh-cCccceehhhhhhhhheecccchhhHHHHHHHHHHHHHHhhccceeeeccccCCccccchhhhhhhhccCceEEEE
Q 006183 462 LWK-VDKLDFLACSCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTVAMGNIPGTHIYQSLNRYREALRVSSFLILA 540 (657)
Q Consensus 462 l~k-~~~~d~~i~~~t~~~~~~~~~~~Gl~~gv~~sl~~~l~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~v~Iir 540 (657)
+|| .++.|+.+|+.+++.+++.+++.|+++|+++|++.+++|.+++. +.++ .++ .++.++++++|
T Consensus 402 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~iv~ 467 (568)
T PRK11660 402 LLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLVLR 467 (568)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEEEE
Confidence 877 58899999999999999999999999999999999999998864 2211 111 34567999999
Q ss_pred EccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhH
Q 006183 541 VESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSV 620 (657)
Q Consensus 541 l~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v 620 (657)
++|+|||+|++++++++++.. ++.+++|+||++|++||+||+++|.++.|++++ |++++++++++++
T Consensus 468 ~~g~L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 468 INGPLFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred eCCeeeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHH
Confidence 999999999999999886532 247899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhCCCccccCCcccccCHHHHHHHHHHH
Q 006183 621 TEKLHQSKVLESFGLNGLYLTVGEAVADISAL 652 (657)
Q Consensus 621 ~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~ 652 (657)
++.|+++|+.+..+.+++|+|+|||++++++.
T Consensus 535 ~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 535 LRTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 99999999999888889999999999999874
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.9e-48 Score=402.80 Aligned_cols=279 Identities=38% Similarity=0.685 Sum_probs=256.3
Q ss_pred HHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCC-cchhHHHHHHHHHHHHH
Q 006183 194 LGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDE-WSWKTVVMGFSFLVFLL 272 (657)
Q Consensus 194 lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~l~~ll 272 (657)
||++|+|++++|+|+||+.||++|+|++++.+|++.++|++..+...+..+.+.++++..++ +||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999998533444555666666766666 59999999999999999
Q ss_pred HHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 006183 273 TTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKGLNPPSSNMLSFNGPFLAVAIKTGLVTGILS 352 (657)
Q Consensus 273 ~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~~~p~~p~~~~~~~~~~~~~~~~i~~~iv~ 352 (657)
..+++.++++++++.+.|.+++++++++++++.++.+.++++.+|++|.++|+|.+|+.+++.+.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 99988877887778888899999999999999998888899999999999999999943444467788888899999999
Q ss_pred HHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHHhh
Q 006183 353 LTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLFLMP 432 (657)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~l~~ 432 (657)
++|++.++|+++++++|++|.|||++|+|++|+++|+|||+|+++++|||++|.++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCccceeh
Q 006183 433 LFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDFLA 472 (657)
Q Consensus 433 l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~i 472 (657)
+++|+|+++||+++++++++|+++++++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999875
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=7e-27 Score=255.15 Aligned_cols=330 Identities=17% Similarity=0.134 Sum_probs=244.1
Q ss_pred HHHHhhhHhHHHhhhCCCc-------chhHHHhhhhhHhhh----hccCCcccccchhHHHHHHHHHHHhhhhcCCCChH
Q 006183 106 ASLAIPQGISYAKLANLPP-------IVGLYSSFVPPLIYS----ILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPI 174 (657)
Q Consensus 106 ~~~~iPq~~aya~laglpp-------~~GL~ss~v~~liy~----~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 174 (657)
+.+.+|.-++-+ .|+|+ +..++++.+++++++ .+|++.++..||.......+.....+
T Consensus 11 ~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~--------- 79 (406)
T TIGR03173 11 GAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG--------- 79 (406)
T ss_pred HHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh---------
Confidence 456667666543 58888 578899999999997 68999999999965332222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccC
Q 006183 175 LYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRD 254 (657)
Q Consensus 175 ~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~ 254 (657)
..++.+.++.+++|++++++|. +++++.|++|+.+++.++..+|+.+...+++...|.... . +
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~---~-------------~ 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGA---P-------------D 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCc---c-------------c
Confidence 2378889999999999999994 789999999998888899999999998888877654310 0 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCC-CCCC---CCCCC
Q 006183 255 EWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPK-GLNP---PSSNM 330 (657)
Q Consensus 255 ~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~~~---p~~p~ 330 (657)
..++.++.+++.+++++++.+++.|++.| .++.++++++++++++.++..+ .+.+++.|. .+|. +..|+
T Consensus 143 ~~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P~ 215 (406)
T TIGR03173 143 FGSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAPT 215 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCCe
Confidence 13455677888888777766654444322 2378999999999999987532 222332221 2222 33444
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccC---CcHHHHHHHHhHhhhhccCCcccccccchhhHhhh
Q 006183 331 LSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVD---GNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYN 407 (657)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d---~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~ 407 (657)
+++ . .+...+.++++++.|+++..++.++..|++.| .|||+.++|++|+++++||++|+++...+++++..
T Consensus 216 f~~--~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~ 289 (406)
T TIGR03173 216 FDL--V----AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQL 289 (406)
T ss_pred eCH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHH
Confidence 433 2 33334567789999999999999988887665 47999999999999999999998875444678888
Q ss_pred cCCCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCcc---ceehhhhhh
Q 006183 408 AGAQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKL---DFLACSCSF 477 (657)
Q Consensus 408 ~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~---d~~i~~~t~ 477 (657)
+|++||++++++|+++++..++ ++++++++|.++++++++ +.++++....++.++|.+.. +..+..+++
T Consensus 290 tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~ 363 (406)
T TIGR03173 290 TGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRRRNLLIVAVSL 363 (406)
T ss_pred hCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCcceehhhHHHH
Confidence 9999999999999999888776 899999999999999877 49999988888888776544 444444433
No 7
>PRK10720 uracil transporter; Provisional
Probab=99.95 E-value=1.1e-25 Score=245.57 Aligned_cols=355 Identities=13% Similarity=0.117 Sum_probs=255.7
Q ss_pred HHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccC-Ccccccchh-HHHHHHHHHHHhhhhcCCCChHHHHHHHHHH
Q 006183 106 ASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGS-SRHLGVGPV-SIASLVMGSMLGEAVSYSQDPILYLELAFTA 183 (657)
Q Consensus 106 ~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gs-s~~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~ 183 (657)
+.+.+|.-+ |+++...+..+.++++++.++++ +.++..||. +.++.+.... .. .++.+.++
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--Hc---------cHHHHHHH
Confidence 555666633 88888999999999999998774 778888983 3333333211 11 26788999
Q ss_pred HHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCCcchh
Q 006183 184 TFFAGLFQASLGLL--RL--GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDEWSWK 259 (657)
Q Consensus 184 ~~l~Gv~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (657)
.+++|+++++++++ |+ +++.+++|+.|++.|++.+|+.+....++. .|... ... +..++.
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~--~~~-------------~~~~~~ 156 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLP--AEG-------------QTPDSK 156 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccC--CCC-------------cccchH
Confidence 99999999999997 33 478999999999999999999999777653 33211 000 124566
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecC-CCCCCCCCCCCCCCChhhH
Q 006183 260 TVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHL-PKGLNPPSSNMLSFNGPFL 338 (657)
Q Consensus 260 ~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~i-p~g~~~p~~p~~~~~~~~~ 338 (657)
++.+++++++++++..+..|++.|.+ +.++++++++++++.++.. +++.+++. +.++|.+..|+++ ...+
T Consensus 157 ~~~lalv~l~iil~~~~~~kg~~~~~-----~iLigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~fd--~~~i 227 (428)
T PRK10720 157 TIIISMVTLAVTVLGSVLFRGFLAII-----PILIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPRFE--WFAI 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHh-----HHHHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCcCc--HHHH
Confidence 78899988888776555455544332 5699999999999998753 23333322 3455655556544 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCc----ccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchh
Q 006183 339 AVAIKTGLVTGILSLTEGIAVGRTFAALKNY----QVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAV 414 (657)
Q Consensus 339 ~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~----~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~l 414 (657)
...++. +++.+.|+++...+.++..++ +.|.|||+.++|++|+++|+||++|++++..+..+-..+|.++|.
T Consensus 228 l~l~~~----~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~ 303 (428)
T PRK10720 228 LTILPA----ALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTW 303 (428)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhH
Confidence 444444 445556776666665554433 457899999999999999999999999988888888889999999
Q ss_pred HHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCccce------ehh-----------hh
Q 006183 415 SNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDF------LAC-----------SC 475 (657)
Q Consensus 415 s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~------~i~-----------~~ 475 (657)
...++++++++..++ ++++++.+|.+|+||+.+ ++++++...+++.+|+ ++.|+ .+. ..
T Consensus 304 v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~-~~~~~~~~~n~~i~~~~l~~g~~~~~~ 381 (428)
T PRK10720 304 VIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIE-SKVDYNKAQNLILTSVILIIGVSGAKV 381 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHH-ccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 888888877777754 899999999999999999 7999999999999965 44443 221 12
Q ss_pred hhhhheecccchhhHHHHHHHHHHHHHHhhccc
Q 006183 476 SFFGVLFISVPLGLAIAVGVSVFKILLHVTRPN 508 (657)
Q Consensus 476 t~~~~~~~~~~~Gl~~gv~~sl~~~l~~~~~p~ 508 (657)
++...+..++..|.++|++++++...+|.-|+.
T Consensus 382 ~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 382 NIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 233344468888999999999887765555543
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.95 E-value=2.2e-25 Score=243.19 Aligned_cols=334 Identities=16% Similarity=0.124 Sum_probs=252.8
Q ss_pred HHHHHhhhHhHHHhhhCCCc-------chhHHHhhhhhHhhhhccCCc---ccccchh-HHHHHHHHHHHhhhhcCCCCh
Q 006183 105 IASLAIPQGISYAKLANLPP-------IVGLYSSFVPPLIYSILGSSR---HLGVGPV-SIASLVMGSMLGEAVSYSQDP 173 (657)
Q Consensus 105 v~~~~iPq~~aya~laglpp-------~~GL~ss~v~~liy~~~Gss~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~ 173 (657)
.+.+.+|.-++-+. +++ +..+..+.++++++++.+..+ +...|+. +.++..+... .+.
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~------- 88 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGL------- 88 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hcc-------
Confidence 45667777776654 444 367899999999999987766 7777875 5554433221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHH
Q 006183 174 ILYLELAFTATFFAGLFQASLGLL--RL--GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSV 249 (657)
Q Consensus 174 ~~~~~~~~~~~~l~Gv~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~ 249 (657)
.++.+..+.+++|+++++++++ |+ +++.+++|+.|..+++.++|+.+...+++++.|....+...+
T Consensus 89 --~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~-------- 158 (415)
T TIGR00801 89 --GIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT-------- 158 (415)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc--------
Confidence 1567889999999999999985 44 577999999999999999999999999999877643211111
Q ss_pred HhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCC-CCCCCCC
Q 006183 250 FNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPK-GLNPPSS 328 (657)
Q Consensus 250 ~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~~~p~~ 328 (657)
-.++.++.+|+.+++++++.+++.|++-| .++.++++++++++++.++..+. +.+.+.|. ++|.+..
T Consensus 159 -----~~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~~ 226 (415)
T TIGR00801 159 -----YGSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTPFT 226 (415)
T ss_pred -----cCchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCccC
Confidence 12455688999888888777655444322 23789999999999999875222 11233332 3444433
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccC----CcHHHHHHHHhHhhhhccCCcccccccchhhH
Q 006183 329 NMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVD----GNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAV 404 (657)
Q Consensus 329 p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d----~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v 404 (657)
|..+|+. ..+...+.++++++.|+++..++++++.|++.| .|||+.++|++|+++|+||++|++++..++++
T Consensus 227 ~g~~f~~----~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~ 302 (415)
T TIGR00801 227 FGPSFEW----PAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV 302 (415)
T ss_pred CCceecH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee
Confidence 3223433 344445677889999999999999999888664 47999999999999999999999999999999
Q ss_pred hhhcCCCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCcc---ceehhhhh
Q 006183 405 NYNAGAQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKL---DFLACSCS 476 (657)
Q Consensus 405 ~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~---d~~i~~~t 476 (657)
+..+|++||.+.+++|+++++..++ ++++++++|.++++++++ +.++++....++.+++.+.. +..+..++
T Consensus 303 ~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s 378 (415)
T TIGR00801 303 IALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAAS 378 (415)
T ss_pred eeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHH
Confidence 9999999999999999999999999 999999999999999998 69999999999888875433 44544443
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.5e-24 Score=229.59 Aligned_cols=381 Identities=18% Similarity=0.262 Sum_probs=289.0
Q ss_pred HHHhhccccccCCCCChhhhHhhHHHHHHHHHHHhhhHhHHHhh--------hCCCcc----hhHHHhhhhhHhhhhccC
Q 006183 76 ALQFLFPILQWGPDYNLKLFRSDIISGLTIASLAIPQGISYAKL--------ANLPPI----VGLYSSFVPPLIYSILGS 143 (657)
Q Consensus 76 ~~~~~~Pi~~wl~~y~~~~l~~Di~aGltv~~~~iPq~~aya~l--------aglpp~----~GL~ss~v~~liy~~~Gs 143 (657)
.++++|-.-+ +-.++++|++||+|+.+ +|+|-.. +|+|.. ....+++++++..+++.
T Consensus 5 ~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~A- 73 (436)
T COG2252 5 DLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYA- 73 (436)
T ss_pred HHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555444 55679999999999998 5666442 567754 34567888999999995
Q ss_pred Ccccccch-hHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhhccHhHHHHHHHHHHHH
Q 006183 144 SRHLGVGP-VSIASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRL-GFIIDFLSKATLVGFMAGAAVI 221 (657)
Q Consensus 144 s~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gi~ 221 (657)
+.++.++| .+..+.....++...+ ..||.+.++.|++|++.++++++++ .++++.+|+++..|..+|+|++
T Consensus 74 n~P~alapgmglnAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlF 146 (436)
T COG2252 74 NLPIALAPGMGLNAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLF 146 (436)
T ss_pred cCchhhcchhhHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45666666 7777888888777664 2389999999999999999999998 4669999999999999999999
Q ss_pred HHHHhhHhhhCccccCCCCChHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHH
Q 006183 222 VSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTL 301 (657)
Q Consensus 222 i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~ 301 (657)
|..-.++ -.|+-. .+.. ..-.+++.+.+.++++++.+++...... +|.+. +.+++++..++
T Consensus 147 ia~IgL~-~~Givv-~~~~--------tlv~LG~~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~t~ 207 (436)
T COG2252 147 IALIGLK-NAGIVV-ANPA--------TLVALGDFTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVTTI 207 (436)
T ss_pred HHHHHHh-hCCeEE-ecCc--------ceEEeecCCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHHHH
Confidence 9988888 445521 1111 1223344444567777777666655443 45554 56888999999
Q ss_pred HHHHhccCCCCeeEeecCCCCCCCCCCCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------cccCCc
Q 006183 302 IVFCLKSKAHGISIIGHLPKGLNPPSSNMLSFNG-PFLAVAIKTGLVTGILSLTEGIAVGRTFAALKN------YQVDGN 374 (657)
Q Consensus 302 ~~~~~~~~~~~v~~vg~ip~g~~~p~~p~~~~~~-~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~------~~~d~n 374 (657)
+++.++.....-...+..|.-. |.+.++|+.. ......++..+...++.+.|++++....+++.| +..+.+
T Consensus 208 ~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~ 285 (436)
T COG2252 208 LGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIG 285 (436)
T ss_pred HHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccc
Confidence 9999885332222233333222 2233455543 334455666777888999999988888877543 234788
Q ss_pred HHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhcc
Q 006183 375 KEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLI 454 (657)
Q Consensus 375 ~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li 454 (657)
|.+.+++++.++|+++|+.|++. +-+|+.....|+||.++.+++|+++++. +|++|++..+|..+.++.+++.+..|.
T Consensus 286 ~al~~D~v~t~~ga~~GtS~~t~-yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~ 363 (436)
T COG2252 286 KALLADSVATVVGALFGTSTVTA-YIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML 363 (436)
T ss_pred hHHHHhHHHHHHHHhcCCcchhh-hhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH
Confidence 99999999999999999999666 9999999999999999999999999999 699999999999999999999999888
Q ss_pred CHHHHHHHhhcCccceehhhhhhhhheecccchhhHHHHHHHHHHHHH
Q 006183 455 DYQAAFRLWKVDKLDFLACSCSFFGVLFISVPLGLAIAVGVSVFKILL 502 (657)
Q Consensus 455 ~~~~~~~l~k~~~~d~~i~~~t~~~~~~~~~~~Gl~~gv~~sl~~~l~ 502 (657)
. .+.++|+.|+...+.+|+..++..+.+.+.-|+.++++.+..
T Consensus 364 ~-----~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 364 S-----SVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred h-----hhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6 677899999999999999999988888888888888876633
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=7.5e-26 Score=188.11 Aligned_cols=83 Identities=54% Similarity=1.049 Sum_probs=80.4
Q ss_pred ccccccCCCCCh-hhhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHH
Q 006183 81 FPILQWGPDYNL-KLFRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVM 159 (657)
Q Consensus 81 ~Pi~~wl~~y~~-~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~ 159 (657)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999997 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 006183 160 GSML 163 (657)
Q Consensus 160 ~~~v 163 (657)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.91 E-value=4.2e-22 Score=217.46 Aligned_cols=328 Identities=16% Similarity=0.137 Sum_probs=222.2
Q ss_pred hHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhh-hccCCcccccchhHHHH-HHHHHHHhhhhcCCCC
Q 006183 95 FRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYS-ILGSSRHLGVGPVSIAS-LVMGSMLGEAVSYSQD 172 (657)
Q Consensus 95 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~-~~Gss~~~~~Gp~a~~s-l~~~~~v~~~~~~~~~ 172 (657)
+...++.|+.-.+...--.++.-.+-|+++...+.++.++++++. .+|++.++..|+..... .++.. . ... ..+
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~-~-~~~--~~~ 104 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAA-T-GYN--GQG 104 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHH-H-hhc--ccC
Confidence 456677777655533322333333347889899999999999996 68999999999855443 33221 1 111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHH
Q 006183 173 PILYLELAFTATFFAGLFQASLGLLRL----GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSS 248 (657)
Q Consensus 173 ~~~~~~~~~~~~~l~Gv~~~~lg~~rl----g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~ 248 (657)
++.+.+.+..+++++|++++++|++++ +++.|++|+.|.+-.+..+|+.++...++...|- ++
T Consensus 105 ~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~~------ 171 (429)
T TIGR03616 105 TNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------GF------ 171 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------cc------
Confidence 223467788999999999999999875 5677888888888888888888887666642211 10
Q ss_pred HHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHh----ccC-CCCeeEe-ecCCCC
Q 006183 249 VFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCL----KSK-AHGISII-GHLPKG 322 (657)
Q Consensus 249 ~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~----~~~-~~~v~~v-g~ip~g 322 (657)
-+|. ++.+++.+++...+.|++-|.. +.++++++++++++.. +.. ..+.+.+ +.-+.+
T Consensus 172 -------~~~~----al~tl~~i~l~~l~~~~~l~~~-----avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~ 235 (429)
T TIGR03616 172 -------DSWM----AVLTILCIGAVAVFTRGMLQRL-----LILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFG 235 (429)
T ss_pred -------ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCccccCcccccCcccc
Confidence 1121 2333333333233334432222 6799999999988764 211 1233333 222234
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCC--cHHHHHHHHhHhhhhccCCcccccccc
Q 006183 323 LNPPSSNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDG--NKEMMAIGFMNIAGSCTSCYVTTGSFS 400 (657)
Q Consensus 323 ~~~p~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~--n~El~a~Gi~Niv~slfg~~p~~~s~s 400 (657)
+|++..|.+++ .. +...+..+++.+.|+++..++.++..+++.|+ |||+.++|++|+++|+||+.|.+.+..
T Consensus 236 lP~~~~p~f~~--~~----il~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~e 309 (429)
T TIGR03616 236 LPNFHTPVFNA--NA----MLLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAE 309 (429)
T ss_pred CCcCCCceEcH--HH----HHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceee
Confidence 66666664443 33 33334557788889988888888877776666 799999999999999999999888877
Q ss_pred hhhHhhhcCCCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHH
Q 006183 401 RSAVNYNAGAQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRL 462 (657)
Q Consensus 401 rS~v~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l 462 (657)
+..+...+|+.+|......++++++..++ ++.++..||.||+||+++ .+++++...+++.+
T Consensus 310 n~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 310 NIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 77778888888887777777665555443 445999999999999998 69999998888733
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.87 E-value=1.8e-19 Score=195.59 Aligned_cols=333 Identities=15% Similarity=0.155 Sum_probs=234.1
Q ss_pred HHHHHhhhHhHHHhhhCCCcc-------hhHHHhhhhhHhhhhccCCcccccchhHHH-HHHHHHHHhhhhcCCCChHHH
Q 006183 105 IASLAIPQGISYAKLANLPPI-------VGLYSSFVPPLIYSILGSSRHLGVGPVSIA-SLVMGSMLGEAVSYSQDPILY 176 (657)
Q Consensus 105 v~~~~iPq~~aya~laglpp~-------~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~-sl~~~~~v~~~~~~~~~~~~~ 176 (657)
.+.+.+|.-++=+ .|+++. ..+..+.+++++.+++|++.++..||.... ..+..-..... ..+......
T Consensus 23 ~~~i~vPliva~a--~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~-~~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLSA--FQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEA-SRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhccc-ccCccHHHH
Confidence 4566677666544 678874 678899999999999999999999995543 32332221110 000011122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCC
Q 006183 177 LELAFTATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDE 255 (657)
Q Consensus 177 ~~~~~~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 255 (657)
.+......+++|++++++|..+ ++++.|++|+-|.+-++.-+|+.++...++++.|.+.. ...+ .++
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~-~~~~-----------~~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFG-IADP-----------NGK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCcc-Cccc-----------ccc
Confidence 2333446799999999999999 79999999999999999999999999999999886210 0011 112
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHH-HhccCCCCeeEeecCCC-CCCCCCCCCCCC
Q 006183 256 WSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVF-CLKSKAHGISIIGHLPK-GLNPPSSNMLSF 333 (657)
Q Consensus 256 ~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~-~~~~~~~~v~~vg~ip~-g~~~p~~p~~~~ 333 (657)
+++..+.+++.++++++....+.|++-|.+ +.++++++|++++. .++. +.+.+++.+. .+| +..|. +|
T Consensus 168 ~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G~v~a~~~~g~---d~~~v~~a~w~~~p-fG~P~-~F 237 (433)
T PRK11412 168 IQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVGWILWAFCFPS---SHSLSGELHWQWFP-LGSGG-AL 237 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHhCC---CcchhccCCceeec-CCCCC-cc
Confidence 334556777777777776666656554433 77999999999854 5554 2222333332 222 33442 23
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc----ccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcC
Q 006183 334 NGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNY----QVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAG 409 (657)
Q Consensus 334 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~----~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G 409 (657)
++..+. ..+..+++...|+++.-++.++..++ +.+.+|.+.++|++|+++++||++|.+....+..+-..+|
T Consensus 238 ~~~~il----~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~Tg 313 (433)
T PRK11412 238 EPGIIL----TAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTG 313 (433)
T ss_pred CHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcC
Confidence 333333 33445555666666555555554443 3466899999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCc
Q 006183 410 AQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDK 467 (657)
Q Consensus 410 ~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~ 467 (657)
+++|....++|+++++..++ ++.++..||.+|++|+.++ .++++....++.+.|.+.
T Consensus 314 V~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~ 372 (433)
T PRK11412 314 DYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITF 372 (433)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 99999999999999988877 7789999999999998887 788887777777766553
No 13
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.86 E-value=7.4e-20 Score=195.57 Aligned_cols=311 Identities=13% Similarity=0.087 Sum_probs=226.3
Q ss_pred hhHHHhhhhhHhhhh----ccCCcccccch-hHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006183 126 VGLYSSFVPPLIYSI----LGSSRHLGVGP-VSIASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRLG 200 (657)
Q Consensus 126 ~GL~ss~v~~liy~~----~Gss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg 200 (657)
+.|++|.+++++|.+ +|+.-+...|. ++..+.+.... ++.+ .-...+....+.+|++.++++.+--.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~-~~~g-------~~~~~~~G~ii~ag~~~~li~~~~~~ 128 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIG-GTTG-------DGIAALLGGIIAAGLVYFLISPIVKI 128 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHH-hccC-------CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999997 45566666776 45555444322 2211 11466788899999999999987322
Q ss_pred hHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhc
Q 006183 201 FIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMR 280 (657)
Q Consensus 201 ~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~ 280 (657)
|+.|++|+.|.+-++.-+|+.++...++.+.|........++ .+..++.+++.++++.++..++.|.
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~-------------~~~~~l~la~~tl~~il~~~~f~~g 195 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF-------------GSLENLGLALVTLLIILLINRFGKG 195 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc-------------CchhHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988632222221 4556788899998888877766665
Q ss_pred CCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCC-CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 006183 281 KPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPK-GLNPPSSNMLSFNGPFLAVAIKTGLVTGILSLTEGIAV 359 (657)
Q Consensus 281 ~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~~~p~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~ 359 (657)
+-|.. +.++++++|+++++.++. .+.+.+.+.|. ++|.|..+...|++..+..+++++++..+....+..++
T Consensus 196 ~~~~i-----~ILiGlv~G~~la~~~G~--vdf~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~ 268 (451)
T COG2233 196 FLRRI-----PILIGLVVGYLLALFMGM--VDFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITAT 268 (451)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHhCC--cCccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 54432 678999999999999983 22222333332 34544444334555555555555444444444444444
Q ss_pred HHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--HhhHhhhc
Q 006183 360 GRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLF--LMPLFYYT 437 (657)
Q Consensus 360 ~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~i 437 (657)
++...++...+.+.+|.++++|++++++++||++|.|+...+..+-..+|.+||.....+|+++++..++ ++.++..|
T Consensus 269 ~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sI 348 (451)
T COG2233 269 GEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQSI 348 (451)
T ss_pred HhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 4443333333456688999999999999999999999999999999999999999999999998888876 88899999
Q ss_pred hHHHHHHHHHHHHhhccCHHHHHHHhhc
Q 006183 438 PNVILAAIIITAVIGLIDYQAAFRLWKV 465 (657)
Q Consensus 438 P~~vLa~ili~~~~~li~~~~~~~l~k~ 465 (657)
|.+|+||+.++ +++++....++.+-|.
T Consensus 349 P~pVlGGa~iv-mFG~Ia~sGir~l~~~ 375 (451)
T COG2233 349 PSPVLGGAMLV-LFGMIAASGIRILIRN 375 (451)
T ss_pred ChhhhhHHHHH-HHHHHHHHHHHHHHhc
Confidence 99999998777 8999988888766553
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.84 E-value=1.2e-18 Score=189.16 Aligned_cols=339 Identities=17% Similarity=0.103 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHH------hhhHhHHHhhhCCC------cchhHHHhhhhhHhhhh-ccCCcccccchhHHHHHHHHHHH
Q 006183 97 SDIISGLTIASLA------IPQGISYAKLANLP------PIVGLYSSFVPPLIYSI-LGSSRHLGVGPVSIASLVMGSML 163 (657)
Q Consensus 97 ~Di~aGltv~~~~------iPq~~aya~laglp------p~~GL~ss~v~~liy~~-~Gss~~~~~Gp~a~~sl~~~~~v 163 (657)
+++++|++-.+.. +|.-++.+ .|++ ....+..+.++++++++ +|...++..||....-. ....+
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~--~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~ 78 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAA--FGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIV 78 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGG
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhcc
Confidence 5778888877543 44444443 2221 24678899999999999 99999999998443211 11111
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCCh
Q 006183 164 GEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRL-GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQF 242 (657)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~ 242 (657)
... ..+....++.+.++.+++|+++++++++++ +++.+++|+.|..+++.++|+.+....++...|...... ..
T Consensus 79 ~g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~-~~- 153 (389)
T PF00860_consen 79 IGM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPD-GL- 153 (389)
T ss_dssp G--------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BT-T--
T ss_pred ccc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccccc-cc-
Confidence 110 012234478889999999999999999997 589999999999999999999999999998888753211 10
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCC-
Q 006183 243 IPVMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPK- 321 (657)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~- 321 (657)
...++.....++.++++.+......+++.+.. +.++++++++++++..+..+.+-. +.+-|.
T Consensus 154 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~~~~~~ 216 (389)
T PF00860_consen 154 -----------LVGDGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VSSAPWF 216 (389)
T ss_dssp -----------B---HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HHHS-SS
T ss_pred -----------ccccccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-ccccccc
Confidence 01234445566666666555554444443332 678999999999999873211110 222221
Q ss_pred CCCC---CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc----ccCCcHHHHHHHHhHhhhhccCCcc
Q 006183 322 GLNP---PSSNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNY----QVDGNKEMMAIGFMNIAGSCTSCYV 394 (657)
Q Consensus 322 g~~~---p~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~----~~d~n~El~a~Gi~Niv~slfg~~p 394 (657)
++|. +..|. ....++...+...++.+.|+++...+.++..+. +.+.+|.+.++|++|+++++||+.|
T Consensus 217 ~~p~~~~~g~p~------f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~ 290 (389)
T PF00860_consen 217 SLPSPFPFGWPS------FDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSP 290 (389)
T ss_dssp --------------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---
T ss_pred cccccccccccc------ccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCC
Confidence 1221 11222 223444455566677777777776666654443 4557899999999999999999999
Q ss_pred cccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCc
Q 006183 395 TTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDK 467 (657)
Q Consensus 395 ~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~ 467 (657)
.+.+..+.+.-..+|+++|..++.++++.+++.++ ++|++..+|.++++|..++ .++++-...++.+...+.
T Consensus 291 ~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~ 364 (389)
T PF00860_consen 291 TTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDL 364 (389)
T ss_dssp EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS
T ss_pred CccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheeccc
Confidence 99988888888889999999999999888877765 8999999999998887665 444444455555444333
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.76 E-value=6.1e-19 Score=158.74 Aligned_cols=117 Identities=32% Similarity=0.529 Sum_probs=103.9
Q ss_pred hhhhhccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHh
Q 006183 527 YREALRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEK 606 (657)
Q Consensus 527 ~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~ 606 (657)
|++.++.+++.|++++|+|+|+|++++++++.+.+.+.+++.+ ...+.+.+|+||++|++||++|+++|.++.+++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999987654311100 23457999999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHH
Q 006183 607 QSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEA 645 (657)
Q Consensus 607 ~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~A 645 (657)
+|++++++++++.+++.|+++|+.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 999999999999999999999999999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.69 E-value=9.6e-17 Score=141.80 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=94.5
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++.+++++|+|+|+|++++++++.+.+.+. +.+.+++||++|+|||+||+++|.++.++++++|+++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~----------~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l 74 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIERR----------PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEV 74 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHhC----------CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999998876532 4789999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAV 646 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av 646 (657)
+++++++++++.|+++|+.+.+ ++|++.++|+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 75 IVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 9999999999999999999988 7999999874
No 17
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.67 E-value=2.3e-16 Score=140.07 Aligned_cols=103 Identities=20% Similarity=0.200 Sum_probs=92.8
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
..+++.+++++|+|+|+|++++++++.+.+.+. ..+.+|+||++|++||+||+++|.++.++++++|+++
T Consensus 7 ~~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~----------~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l 76 (109)
T cd07041 7 VWDGVLVLPLIGDLDDERAEQLQERLLEAISRR----------RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGART 76 (109)
T ss_pred EeCCEEEEeeeeeECHHHHHHHHHHHHHHHHHc----------CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeE
Confidence 346899999999999999999999987765432 4789999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAV 646 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av 646 (657)
+++++++++++.|+++|+.+ +..++|+|++||+
T Consensus 77 ~l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 77 ILTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 99999999999999999977 3348999999985
No 18
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.60 E-value=3.7e-15 Score=130.23 Aligned_cols=93 Identities=22% Similarity=0.316 Sum_probs=84.8
Q ss_pred hccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCE
Q 006183 531 LRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQ 610 (657)
Q Consensus 531 ~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 610 (657)
++.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||++|+|||+||+++|.+++++++++|++
T Consensus 4 ~~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~ 73 (100)
T cd06844 4 EKVDDYWVVRLEGELDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQ 73 (100)
T ss_pred EEECCEEEEEEEEEecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 346789999999999999999999998776542 2478999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhCCCcccc
Q 006183 611 LVLANPVGSVTEKLHQSKVLESF 633 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~~g~~~~~ 633 (657)
+.++++++++++.|+++|+.+.+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 74 FVLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEEECCCHHHHHHHHHhCchhhh
Confidence 99999999999999999997755
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.59 E-value=1.5e-12 Score=138.58 Aligned_cols=341 Identities=17% Similarity=0.184 Sum_probs=205.8
Q ss_pred hhHHHHHHHHHHHhhh--HhHH--HhhhCCCcc---hhH----HHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhh
Q 006183 97 SDIISGLTIASLAIPQ--GISY--AKLANLPPI---VGL----YSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGE 165 (657)
Q Consensus 97 ~Di~aGltv~~~~iPq--~~ay--a~laglpp~---~GL----~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~ 165 (657)
.-+.||+...++..-- .+=+ +.-.|+++. ..+ .++.+.+++.++. .+.+++.++...-+.+++....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchHHHHHHHhcCC
Confidence 4466777766543211 1111 233577775 222 2344555555555 37788888865555555433332
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHH
Q 006183 166 AVSYSQDPILYLELAFTATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIP 244 (657)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~ 244 (657)
.. +..+..+.+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+..
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 21 4566788899999999999999 7999999999999999999988876544332210
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHHHHHHhhhcC-CcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCCC
Q 006183 245 VMSSVFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRK-PKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKGL 323 (657)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~-~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~ 323 (657)
..+++...++..++. ||+ |+ ++.++++++|+++++..+..+. + .+...+
T Consensus 160 ---------------~pll~~~mll~~l~~----~r~~Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~l 209 (395)
T TIGR00843 160 ---------------LFLICFSMLLCWLAS----KAFAPR------YAMIAALICGIAFSFALGDMNP--T---DLDFKI 209 (395)
T ss_pred ---------------hHHHHHHHHHHHHHH----HHhcch------HHHHHHHHHHHHHHHHhcCCCc--c---cccccc
Confidence 112232222222333 332 32 3778999999999988764221 1 111123
Q ss_pred CCCC--CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcc------c
Q 006183 324 NPPS--SNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYV------T 395 (657)
Q Consensus 324 ~~p~--~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p------~ 395 (657)
+.|. .|++++ ...+..++...++.+.....-+-...+.+||+.+.++-+.+.|++|++++.|||++ +
T Consensus 210 ~~p~~~~P~fs~-----~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaait 284 (395)
T TIGR00843 210 ALPQFIAPDFSF-----AHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAIT 284 (395)
T ss_pred ccceeeCCCCCH-----HHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHh
Confidence 3333 455543 23344444555555543332233344568888889999999999999999999999 3
Q ss_pred ccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH---HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcC-ccc--
Q 006183 396 TGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLLF---LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVD-KLD-- 469 (657)
Q Consensus 396 ~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~-~~d-- 469 (657)
++-+.......+ ++|+-.+++..|++.++..+| +..++..+|.+..+++-=.+.++-+.- .+..-.+.+ .+|
T Consensus 285 aAic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~-~l~~a~~~~~~r~~a 362 (395)
T TIGR00843 285 AAICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG-NIKIALHEDQERDAA 362 (395)
T ss_pred HHHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHhcCcchhHHH
Confidence 332223333333 788899999999999988877 556799999998887655555554432 222222211 112
Q ss_pred eehhhhhhhhheecc---cchhhHHHHHHH
Q 006183 470 FLACSCSFFGVLFIS---VPLGLAIAVGVS 496 (657)
Q Consensus 470 ~~i~~~t~~~~~~~~---~~~Gl~~gv~~s 496 (657)
.+.+++|.-+.-+.| -.+|+++|+...
T Consensus 363 ~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 363 LIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 123334444444444 456788886543
No 20
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.58 E-value=1.4e-12 Score=150.29 Aligned_cols=350 Identities=15% Similarity=0.142 Sum_probs=239.9
Q ss_pred hhHHHHHHHHHHHhhhHhHHHhhhC------CCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCC
Q 006183 97 SDIISGLTIASLAIPQGISYAKLAN------LPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYS 170 (657)
Q Consensus 97 ~Di~aGltv~~~~iPq~~aya~lag------lpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~ 170 (657)
+-+-|=+-+.+.++.-++||+.+.+ +...=-|.|+.+++++|++||+.|-.++|+++.+.++......--.
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~--- 446 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE--- 446 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---
Confidence 3444555566777888888887632 4455669999999999999999999999998888776554443221
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCC-CChH------
Q 006183 171 QDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSK-MQFI------ 243 (657)
Q Consensus 171 ~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~-~~~~------ 243 (657)
.+..+|+...+.+.+.++++.++++.+...++++|+.+..--.|-.=++++.+...++.+...-..... .+..
T Consensus 447 ~~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~ 526 (900)
T TIGR00834 447 SNGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVP 526 (900)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Confidence 112357888889999999999999999999999999999999999999999999988887654211000 0000
Q ss_pred -----HHH-----HHH------H-----hccCCcchhHHHHHHHHHHHHHHHHHhhh--cCCcc--cccccchhHHHHHH
Q 006183 244 -----PVM-----SSV------F-----NQRDEWSWKTVVMGFSFLVFLLTTRQISM--RKPKL--FWVSAAAPLTSVIL 298 (657)
Q Consensus 244 -----~~~-----~~~------~-----~~~~~~~~~~~~ig~~~l~~ll~~~~~~~--~~~~~--~~i~~~~~li~vi~ 298 (657)
... ... + ...++.-..++++.+.++.+.+.++.+++ .+++. ..+.-.+..++|++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~ 606 (900)
T TIGR00834 527 PKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILI 606 (900)
T ss_pred cccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHH
Confidence 000 000 0 00011223345555556555555554432 12221 13555677889999
Q ss_pred HHHHHHHhcc-CCCCeeEeecCCCCCCCCCCCC--------CC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006183 299 STLIVFCLKS-KAHGISIIGHLPKGLNPPSSNM--------LS----FNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAA 365 (657)
Q Consensus 299 ~t~~~~~~~~-~~~~v~~vg~ip~g~~~p~~p~--------~~----~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~ 365 (657)
.+.+.|.++. +... -.+|.++. |.-|. +. +.......++..|+.+++.-|+|+-.++....+
T Consensus 607 ~t~v~~~~~~v~~~k----l~Vp~~f~-pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~ 681 (900)
T TIGR00834 607 MVLVDIFIGDTYTQK----LSVPSGLK-VTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSK 681 (900)
T ss_pred HHHHHHHhccCcccc----cCCCCCcC-CCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 9999987651 1111 13555554 22221 11 122344677888899999999998777766655
Q ss_pred ccCc---ccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhc----------C-------C-CchhHHHHHHHHHH
Q 006183 366 LKNY---QVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNA----------G-------A-QSAVSNVVMASAVL 424 (657)
Q Consensus 366 ~~~~---~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~----------G-------~-rT~ls~iv~a~~~l 424 (657)
+.+. ..-.+-+++-+|+.|.++|+||-.+.+|+..+|....++ | + .+|+++++.++++.
T Consensus 682 ~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLig 761 (900)
T TIGR00834 682 KERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVG 761 (900)
T ss_pred ccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHH
Confidence 4321 223477899999999999999999999998888765542 1 2 46899999998776
Q ss_pred HHHHHHhhHhhhchHHHHHHHHHHHHhhccC
Q 006183 425 VTLLFLMPLFYYTPNVILAAIIITAVIGLID 455 (657)
Q Consensus 425 l~ll~l~~l~~~iP~~vLa~ili~~~~~li~ 455 (657)
+.+ ++.|++.+||++||.|+.++.|+.-+.
T Consensus 762 lsv-~~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 762 LSI-LMEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred HHH-HHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 665 688999999999999999999988663
No 21
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.45 E-value=2.4e-13 Score=120.27 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=91.2
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
..+++.+++++|+++|.|++.+++.+.+...+ +..+.+++||+++++|||+|++.|.++.++++++|+++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~ 78 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQL 78 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEE
Confidence 45789999999999999999999999886653 24789999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGE 644 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~ 644 (657)
.++++++++++.|+++|+.+.+ .+|+|+++
T Consensus 79 ~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 79 VLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 9999999999999999999988 68888653
No 22
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3.8e-11 Score=135.20 Aligned_cols=337 Identities=13% Similarity=0.156 Sum_probs=227.0
Q ss_pred hhHhHHHhhhC------CCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 006183 111 PQGISYAKLAN------LPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPILYLELAFTAT 184 (657)
Q Consensus 111 Pq~~aya~lag------lpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~ 184 (657)
=-+++|+.+-+ +...-.|.|+.+++++|++||+-|-.++|+++.+.++-..+. +.. .+++.+|+...+.+.
T Consensus 375 ~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf-~f~--~~~~~dyl~~r~wVg 451 (876)
T KOG1172|consen 375 LPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALF-KFC--KDNGLDYLAFRAWVG 451 (876)
T ss_pred hhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHH-HHH--hhCCCchhhHHHHHH
Confidence 33566665422 333456999999999999999999999998888766544332 222 123356888889999
Q ss_pred HHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCC-C--h-HHH--HHHHHhcc-----
Q 006183 185 FFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKM-Q--F-IPV--MSSVFNQR----- 253 (657)
Q Consensus 185 ~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~-~--~-~~~--~~~~~~~~----- 253 (657)
+.+.++.+++..+....+++|+.+..--.|-.-++++.+...++.+.++....... + . ... ...--.+.
T Consensus 452 lW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (876)
T KOG1172|consen 452 LWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLL 531 (876)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccC
Confidence 99999999999999999999999999999999999999999999877664211000 0 0 000 00000000
Q ss_pred -CCcchhHHHHHHH----HHHHHHHHHHhhh--cCCcc--cccccchhHHHHHHHHHHHHHhc-cCCCCeeEeecCCCCC
Q 006183 254 -DEWSWKTVVMGFS----FLVFLLTTRQISM--RKPKL--FWVSAAAPLTSVILSTLIVFCLK-SKAHGISIIGHLPKGL 323 (657)
Q Consensus 254 -~~~~~~~~~ig~~----~l~~ll~~~~~~~--~~~~~--~~i~~~~~li~vi~~t~~~~~~~-~~~~~v~~vg~ip~g~ 323 (657)
..+.+.+.+++++ ++.+-+..|.+++ .++++ .+++-.+..++|++-+++.|..+ .+..++. +|..+
T Consensus 532 ~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~ 607 (876)
T KOG1172|consen 532 GSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVF 607 (876)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCC
Confidence 1122334444443 3333333333221 11211 23555667788888888888875 2333332 23333
Q ss_pred CCCCC--------CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---ccCCcHHHHHHHHhHhhhhccCC
Q 006183 324 NPPSS--------NMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNY---QVDGNKEMMAIGFMNIAGSCTSC 392 (657)
Q Consensus 324 ~~p~~--------p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~---~~d~n~El~a~Gi~Niv~slfg~ 392 (657)
|++.. |.-......+..++..++.++++-|+|+-.++....++.+. ....+-+|+-.|+.|.++|+||-
T Consensus 608 ~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGL 687 (876)
T KOG1172|consen 608 PPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGL 687 (876)
T ss_pred CCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCC
Confidence 32221 11123345677888889999999999987777666554332 23346789999999999999999
Q ss_pred cccccccchhhHhhhc-----------------CC-CchhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhcc
Q 006183 393 YVTTGSFSRSAVNYNA-----------------GA-QSAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLI 454 (657)
Q Consensus 393 ~p~~~s~srS~v~~~~-----------------G~-rT~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li 454 (657)
.+..|+..+|-...++ |+ ..|++|++.++++.+ ..++.|++..||++||-|+..+.++.-+
T Consensus 688 Pw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgl-s~~~~pvL~~IP~~VL~GvFlYMgv~SL 766 (876)
T KOG1172|consen 688 PWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGL-SVLLLPVLKLIPMPVLYGVFLYMGVSSL 766 (876)
T ss_pred CccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHhhccC
Confidence 9999999998876553 23 357999999998884 4479999999999999999999988865
Q ss_pred C
Q 006183 455 D 455 (657)
Q Consensus 455 ~ 455 (657)
.
T Consensus 767 ~ 767 (876)
T KOG1172|consen 767 P 767 (876)
T ss_pred C
Confidence 3
No 23
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.41 E-value=1.4e-12 Score=114.82 Aligned_cols=101 Identities=32% Similarity=0.571 Sum_probs=88.7
Q ss_pred hccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCE
Q 006183 531 LRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQ 610 (657)
Q Consensus 531 ~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 610 (657)
...+++.+++++|+++|.|++++++++.+..+.. +..+.+|+||++++++|++|++.|.++.++++++|++
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~ 75 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE 75 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 3457899999999999999999999987755421 2257999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhCCCccccCCccccc
Q 006183 611 LVLANPVGSVTEKLHQSKVLESFGLNGLYL 640 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~ 640 (657)
+.++++++++++.+++.|+.+.++.+..+.
T Consensus 76 ~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 76 LYLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 999999999999999999998887655543
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.39 E-value=4.7e-10 Score=117.40 Aligned_cols=274 Identities=18% Similarity=0.205 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCC
Q 006183 177 LELAFTATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDE 255 (657)
Q Consensus 177 ~~~~~~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 255 (657)
+..+..+-+++|++.++.|+.+ ++++++++|.++..+.++|+-+.....-++.+-.
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~----------------------- 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQA----------------------- 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 4556778889999999999999 7999999999999999999988776554443210
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCCCCCCC--CCCCCC
Q 006183 256 WSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKGLNPPS--SNMLSF 333 (657)
Q Consensus 256 ~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~~~p~--~p~~~~ 333 (657)
.. .+....++..++.|++.+|+ +.+.+++.+.++++..+.-+ . ..++..++.|. .|.+++
T Consensus 144 ---~P-~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~Fs~ 205 (378)
T PF03594_consen 144 ---DP-LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEFSW 205 (378)
T ss_pred ---HH-HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcccH
Confidence 11 22233333334445444444 35667777777777655311 1 11122343343 455544
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhh--cC--
Q 006183 334 NGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYN--AG-- 409 (657)
Q Consensus 334 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~--~G-- 409 (657)
...+.+++.+.++.+.....-+-+.-+.+||+.+.|+-+..-|+++++.+.|||++.+-+--..++... ++
T Consensus 206 -----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~d 280 (378)
T PF03594_consen 206 -----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPD 280 (378)
T ss_pred -----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCC
Confidence 355666777788877766666666667899999999999999999999999999998876666666544 33
Q ss_pred -CCchhHHHHHHHHHHHHHHH---HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCc-cc--eehhhhhhhhhee
Q 006183 410 -AQSAVSNVVMASAVLVTLLF---LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDK-LD--FLACSCSFFGVLF 482 (657)
Q Consensus 410 -~rT~ls~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~-~d--~~i~~~t~~~~~~ 482 (657)
.|.-.+++++|++.++..+| +..++..+|.+.++.+-=.+.++-+. ..+..-++.++ .| .+.+++|.-+.-+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~~r~aAlvtFlvtaSGisl 359 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEKYREAALVTFLVTASGISL 359 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHHHHHHHHHcCCCc
Confidence 23346999999999988887 55678999999887765555555442 23334444322 22 1233334444444
Q ss_pred cc---cchhhHHHHHHHH
Q 006183 483 IS---VPLGLAIAVGVSV 497 (657)
Q Consensus 483 ~~---~~~Gl~~gv~~sl 497 (657)
.| -.+|+++|++..+
T Consensus 360 ~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 360 LGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 44 4568888877653
No 25
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.30 E-value=1.5e-11 Score=106.69 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=82.3
Q ss_pred cCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEE
Q 006183 533 VSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLV 612 (657)
Q Consensus 533 ~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~ 612 (657)
.+++.+++++|+++|.|++.+++.+.+..++ ..+.+++||+++.++|++|+++|.++.++++++|.++.
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~-----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE-----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc-----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 4578999999999999999999988775432 26899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhCCCcccc
Q 006183 613 LANPVGSVTEKLHQSKVLESF 633 (657)
Q Consensus 613 l~~~~~~v~~~L~~~g~~~~~ 633 (657)
++++++++++.|++.|+.+.+
T Consensus 75 i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 75 LVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEcCCHHHHHHHHHhCcceee
Confidence 999999999999999998766
No 26
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-11 Score=108.37 Aligned_cols=99 Identities=23% Similarity=0.310 Sum_probs=87.7
Q ss_pred eEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc
Q 006183 536 FLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN 615 (657)
Q Consensus 536 v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~ 615 (657)
..++.+.|.||..|+..+++.+.+++.+. ..+.+++|+++|+|+||+|++.|....+.++++|+++.+++
T Consensus 14 ~~vl~l~G~lD~~~a~~~~e~~~~~~~~~----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~ 83 (117)
T COG1366 14 ILVLPLIGELDAARAPALKETLLEVIAAS----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVG 83 (117)
T ss_pred EEEEEeeEEEchHHHHHHHHHHHHHHhcC----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 37999999999999999999999877654 45669999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCCccccCCcccccCHHHHHH
Q 006183 616 PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVA 647 (657)
Q Consensus 616 ~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~ 647 (657)
++|++++.++.+|+.+.+ .++++.+++..
T Consensus 84 i~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 84 IQPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred CCHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 999999999999998776 46666555543
No 27
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.15 E-value=1.2e-11 Score=136.04 Aligned_cols=349 Identities=14% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhHhHHHhhhC------CCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCCh
Q 006183 100 ISGLTIASLAIPQGISYAKLAN------LPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDP 173 (657)
Q Consensus 100 ~aGltv~~~~iPq~~aya~lag------lpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 173 (657)
-|=+-+.+.++.-+++|+.+-+ +...-.|.++.+++++|++||+.|-.++|+++.+.+....... .. ....
T Consensus 37 ~~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~-~~--~~~~ 113 (510)
T PF00955_consen 37 AATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYK-FC--KSYG 113 (510)
T ss_dssp HHHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc--cccc
Confidence 3455566777888888887643 4445678999999999999999999999998887765443322 21 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCC-CCCh----------
Q 006183 174 ILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTS-KMQF---------- 242 (657)
Q Consensus 174 ~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~-~~~~---------- 242 (657)
.+|+..-....+.++++.++++.+...++++|+.+..-..|-.=+++..+...++.+..+..... ..+.
T Consensus 114 ~~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~ 193 (510)
T PF00955_consen 114 LDFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTP 193 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35777778899999999999999999999999999999999999999999999888875521100 0000
Q ss_pred -------------------HH---H-HHHHHhcc-----------CCcch----hHHHHHHHHHHHHHHHHHhhh--cCC
Q 006183 243 -------------------IP---V-MSSVFNQR-----------DEWSW----KTVVMGFSFLVFLLTTRQISM--RKP 282 (657)
Q Consensus 243 -------------------~~---~-~~~~~~~~-----------~~~~~----~~~~ig~~~l~~ll~~~~~~~--~~~ 282 (657)
.. . ..+.-... .+..+ .++++.+.++.+...++.+++ -++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~ 273 (510)
T PF00955_consen 194 PENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFP 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCcc
Confidence 00 0 00000000 01112 223333334433333333221 112
Q ss_pred cc--cccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCCCCCCC-------CCCC-CCChhhHHHHHHHHHHHHHHH
Q 006183 283 KL--FWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKGLNPPS-------SNML-SFNGPFLAVAIKTGLVTGILS 352 (657)
Q Consensus 283 ~~--~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~~~p~-------~p~~-~~~~~~~~~~~~~~i~~~iv~ 352 (657)
+. -.++..+..++|++.+.+.+.++.+.... ++|.++.+.. ++.+ +........++..++.+++.-
T Consensus 274 ~~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~ 349 (510)
T PF00955_consen 274 RWVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILF 349 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 11 13555677788888888887765322221 2344432111 1111 111122344556677788888
Q ss_pred HHHHHHHHHHhhhccCc---ccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCC------------------C
Q 006183 353 LTEGIAVGRTFAALKNY---QVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGA------------------Q 411 (657)
Q Consensus 353 ~~~~~~~~~~~a~~~~~---~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~------------------r 411 (657)
+.|+-.++....++++. ..-.+-+|+-.|+.|.++|++|-.+.+++..+|....++=. .
T Consensus 350 F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~E 429 (510)
T PF00955_consen 350 FMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVRE 429 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEE
Confidence 88876666555443221 12335689999999999999999889998888877654322 5
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhccCH
Q 006183 412 SAVSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDY 456 (657)
Q Consensus 412 T~ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~ 456 (657)
+|+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++-
T Consensus 430 qRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~g 473 (510)
T PF00955_consen 430 QRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSG 473 (510)
T ss_dssp ---------------------------------------------
T ss_pred ecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecC
Confidence 7899999998776666 6789999999999999999988876643
No 28
>PF13466 STAS_2: STAS domain
Probab=99.06 E-value=5.4e-10 Score=93.21 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=73.9
Q ss_pred EEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCCh
Q 006183 539 LAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVG 618 (657)
Q Consensus 539 irl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~ 618 (657)
+++.|++++.+++.+++.+.++++. .+.+++|+++|++||++|++.|.+..+.++++|.++.+.++++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~------------~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~ 68 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS------------GRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSP 68 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC------------CCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4789999999999999999887632 2789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhCCCc
Q 006183 619 SVTEKLHQSKVL 630 (657)
Q Consensus 619 ~v~~~L~~~g~~ 630 (657)
.+++.++..|++
T Consensus 69 ~~~~ll~~~gld 80 (80)
T PF13466_consen 69 ALRRLLELLGLD 80 (80)
T ss_pred HHHHHHHHhCcC
Confidence 999999999973
No 29
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.02 E-value=2.9e-08 Score=105.74 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=175.4
Q ss_pred hhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHh--hhhcC---CC-ChH---HHHHHHHHHHHHHHHHHHHHHh
Q 006183 126 VGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLG--EAVSY---SQ-DPI---LYLELAFTATFFAGLFQASLGL 196 (657)
Q Consensus 126 ~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~--~~~~~---~~-~~~---~~~~~~~~~~~l~Gv~~~~lg~ 196 (657)
.-++++.+..++...||++.++..||.-..-.-+-+++. +.... .+ +.+ ..++..-.+.++++++|.++|+
T Consensus 54 T~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~ 133 (510)
T KOG1292|consen 54 TIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGF 133 (510)
T ss_pred HHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 467888899999999999999999994433322223332 22111 11 111 2345667889999999999999
Q ss_pred hhh-hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHH
Q 006183 197 LRL-GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDEWSWKTVVMGFSFLVFLLTTR 275 (657)
Q Consensus 197 ~rl-g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~ 275 (657)
.++ |++.+|+++-.+.=.++-+|+.+.....+.+- .+| -+|+..+.++++..
T Consensus 134 sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~~----------------------~~w-----eI~l~~~llli~fs 186 (510)
T KOG1292|consen 134 SGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKLG----------------------KHW-----EISLPEILLLILFS 186 (510)
T ss_pred hhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhhh----------------------hhe-----eecHHHHHHHHHHH
Confidence 995 99999999999988888777766533222110 011 13444444433332
Q ss_pred -H--hhhcCC---cccccccchhHHHHHHHHHHHHHhc---cCCC-----Ce----e---EeecCCC-CCCC---CCCCC
Q 006183 276 -Q--ISMRKP---KLFWVSAAAPLTSVILSTLIVFCLK---SKAH-----GI----S---IIGHLPK-GLNP---PSSNM 330 (657)
Q Consensus 276 -~--~~~~~~---~~~~i~~~~~li~vi~~t~~~~~~~---~~~~-----~v----~---~vg~ip~-g~~~---p~~p~ 330 (657)
+ +.++.. +...+.-.+.++++.+..++++++- ...+ +. + +...-|. ..|. +..|.
T Consensus 187 qy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~ 266 (510)
T KOG1292|consen 187 QYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPT 266 (510)
T ss_pred HhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCc
Confidence 2 211111 1111122245677777777777652 1111 00 0 1111111 1121 12333
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccc-hhhHhhhcC
Q 006183 331 LSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFS-RSAVNYNAG 409 (657)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~s-rS~v~~~~G 409 (657)
+ +......++...++..+.+...-.+.+|.......-....||....+|++.+++|+||.-.++..++ +-++-.-+.
T Consensus 267 f--~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTK 344 (510)
T KOG1292|consen 267 F--SAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTK 344 (510)
T ss_pred c--cHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeee
Confidence 3 3344444554444444444444445555544444445566999999999999999999655444333 344444455
Q ss_pred CCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhcc
Q 006183 410 AQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLI 454 (657)
Q Consensus 410 ~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li 454 (657)
.-||..--++|.++++.-.+ ++.+|+.||.++.||+.-. +++|+
T Consensus 345 VgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv 390 (510)
T KOG1292|consen 345 VGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMV 390 (510)
T ss_pred eeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHH
Confidence 66777767777777766665 8899999999999997644 55555
No 30
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=1e-06 Score=90.51 Aligned_cols=273 Identities=16% Similarity=0.150 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCC
Q 006183 177 LELAFTATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDE 255 (657)
Q Consensus 177 ~~~~~~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 255 (657)
...+..+-+.+|...++.|++| ++++++-+|+++-.+..+|+=+-..+..++.+-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 4456677788999999999999 899999999999999999987777655554321
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCC--CCCCCCCCCCC
Q 006183 256 WSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKG--LNPPSSNMLSF 333 (657)
Q Consensus 256 ~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g--~~~p~~p~~~~ 333 (657)
.++ ++.+..+...++.|.+.+|+ +...++++|..++...+.-.. +..+.- .|....|+|++
T Consensus 158 ~~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 158 TQP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred CCh---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 111 12222222333345554444 456677788888777653111 111111 22233354443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhc-----
Q 006183 334 NGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNA----- 408 (657)
Q Consensus 334 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~----- 408 (657)
..++.+++.+.++.+...-.-+-+.-+.+||+.+++.-+.+-|+..+.++.||++.++-.--.-++...-
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD 295 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPD 295 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCC
Confidence 3556677777777776554444444557899999999999999999999999999876533222222211
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh---hHhhhchHHHHHHHHHHHHhhccCHHHHHHHhh-cCccce--ehhhhhhhhhee
Q 006183 409 GAQSAVSNVVMASAVLVTLLFLM---PLFYYTPNVILAAIIITAVIGLIDYQAAFRLWK-VDKLDF--LACSCSFFGVLF 482 (657)
Q Consensus 409 G~rT~ls~iv~a~~~ll~ll~l~---~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k-~~~~d~--~i~~~t~~~~~~ 482 (657)
-.|.-.+++++|+.-+++.+|.+ .++..+|++.+..+-=.+..+-+. ..+..-.| -+.+|. +.+++|.-+.-+
T Consensus 296 ~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~-~~l~~A~~~~~~R~aAlvtF~VTaSG~tl 374 (402)
T COG3135 296 PARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLG-NSLQAALKDEREREAALVTFLVTASGLTL 374 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHhcCcccchhhhhheeehhcccee
Confidence 13555799999999999998844 567899998766543333333221 22333333 222222 233445444455
Q ss_pred ccc---chhhHHHHHHH
Q 006183 483 ISV---PLGLAIAVGVS 496 (657)
Q Consensus 483 ~~~---~~Gl~~gv~~s 496 (657)
+|+ .+|++.|...-
T Consensus 375 ~GIgaafWGLvaG~~~~ 391 (402)
T COG3135 375 FGIGAAFWGLVAGLLVL 391 (402)
T ss_pred ecccHHHHHHHHHHHHH
Confidence 544 45777776543
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.86 E-value=0.0098 Score=61.98 Aligned_cols=249 Identities=14% Similarity=0.170 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHHHHhccCCcchh
Q 006183 181 FTATFFAGLFQASLGLLRL-GFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSSVFNQRDEWSWK 259 (657)
Q Consensus 181 ~~~~~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (657)
.+..++.|++=++++.+|. .++++.-++-|-+|.+-=.|+.=..+|++.++.-... + +..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~----------------~-~~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANG----------------F-DMGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhc----------------c-CccHH
Confidence 3567899999999999996 5668899999999877767777777888877643211 0 12222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCCCCCCCCC------------
Q 006183 260 TVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLPKGLNPPS------------ 327 (657)
Q Consensus 260 ~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~~~p~------------ 327 (657)
.+++-++++++.....+++|||- -+| ++-+++.++++..+.. ++.. -+.|+|..+
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~KrWL---aIP-----l~~~~a~~~a~~lGa~---f~f~--t~pglp~lnP~YWWge~tGw~ 274 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKRWL---AIP-----LCSILAGVLAFALGAP---FEFT--TEPGLPNLNPMYWWGEETGWQ 274 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccchh---hhh-----HHHHHHHHHHHHcCCC---ceee--cCCCCCCCCCcccccCCcccc
Confidence 33333333333333333444433 222 3334455556666542 1111 112232111
Q ss_pred --CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCcccCCcHHHHHHHHhHhhhhccCCccccccc
Q 006183 328 --SNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAAL------KNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSF 399 (657)
Q Consensus 328 --~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~------~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~ 399 (657)
+|.+ +.+...++.++.....=.-+.++ -+.|.+. ++...|.|+.+....+=|++|+.+||--.+.|.
T Consensus 275 LglP~~----~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW 349 (492)
T PF11840_consen 275 LGLPTL----EHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW 349 (492)
T ss_pred cCCCcH----HHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc
Confidence 1211 22334444433211111112221 1333321 233468889999999999999999998766655
Q ss_pred chhhHhhhcCCCc--hhHHHHHHHHHHHHHHHHhhH--hhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCcc
Q 006183 400 SRSAVNYNAGAQS--AVSNVVMASAVLVTLLFLMPL--FYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKL 468 (657)
Q Consensus 400 srS~v~~~~G~rT--~ls~iv~a~~~ll~ll~l~~l--~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~ 468 (657)
..-.+-.. =+|. |-..+.+|++++++.+..-|. .-+= +++...+++-++-=+-.... +.||-+|.
T Consensus 350 gTymIPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~--Pvl~vALlvGVflPLleAGm-qm~r~~k~ 418 (492)
T PF11840_consen 350 GTYMIPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWP--PVLRVALLVGVFLPLLEAGM-QMTRKGKT 418 (492)
T ss_pred hhhhhhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcc--cHHHHHHHHHHHHHHHHHHH-HHHhcCCc
Confidence 54444332 2333 457888999998888777664 3343 44555555533321222222 45665553
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.65 E-value=0.00019 Score=60.65 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=66.4
Q ss_pred EEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006183 538 ILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV 617 (657)
Q Consensus 538 Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~ 617 (657)
.+.+.|+|+=.....+-+...++ .+....+-+|+++|.-+||+|+..|.++.+.++++|..+.+++++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~------------~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQ------------LKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHH------------ccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 36788888744433333322221 223478999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCcccc
Q 006183 618 GSVTEKLHQSKVLESF 633 (657)
Q Consensus 618 ~~v~~~L~~~g~~~~~ 633 (657)
++++...+..|+.+.+
T Consensus 81 ~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 81 EQLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHHhCcHhhh
Confidence 9999999999986544
No 33
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=92.50 E-value=0.069 Score=46.76 Aligned_cols=106 Identities=8% Similarity=-0.038 Sum_probs=64.4
Q ss_pred ceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcc-CCCcccHHHHHHHHHHHHHHHhcCCEEEE
Q 006183 535 SFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMT-AVTAIDTSGIDMVCELRKILEKQSLQLVL 613 (657)
Q Consensus 535 ~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s-~V~~IDssgl~~L~~l~~~l~~~gi~l~l 613 (657)
++..++++|.+.-....++.+.+.+.+++ .+.-.+.+|++ .+..++..+.....++.....++=.++.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~Av 70 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIAD----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAV 70 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTT----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhc----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEE
Confidence 46788999999877777777777665442 24578999999 88888886655444332221122246777
Q ss_pred EcCChhHHHHHHhCCCccccCCcccc--cCHHHHHHHHHH
Q 006183 614 ANPVGSVTEKLHQSKVLESFGLNGLY--LTVGEAVADISA 651 (657)
Q Consensus 614 ~~~~~~v~~~L~~~g~~~~~~~~~if--~tv~~Av~~~~~ 651 (657)
++.++-.+...+..+.. .-.+-++| .+.+||.+|.++
T Consensus 71 V~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 71 VGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp E-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC-
T ss_pred EECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHcC
Confidence 77665333332222221 11234899 999999999863
No 34
>PRK10720 uracil transporter; Provisional
Probab=90.93 E-value=1.2 Score=49.39 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=43.3
Q ss_pred HHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHH
Q 006183 376 EMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSAVSNVVMASAVLVTLL 428 (657)
Q Consensus 376 El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ls~iv~a~~~ll~ll 428 (657)
++...=.++=++++++++-++...+-.+-|...+++|+.++-+...+-...+.
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li 313 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAI 313 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHH
Confidence 45666788899999999988888888888999999999999887765555443
No 35
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.76 E-value=0.46 Score=41.28 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=59.0
Q ss_pred EEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHhCCCccccCCcccccCHHHHHHHHHHH
Q 006183 579 IILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLHQSKVLESFGLNGLYLTVGEAVADISAL 652 (657)
Q Consensus 579 vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~ 652 (657)
+++|+.+|-+-+...+.-=.+..+.++++|.++++..-+ .+..++|+..|+. +.+++++.+-..+.++.+++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 589999999999988888899999999999999886432 4788999999985 56689999999998888874
No 36
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=90.17 E-value=6 Score=45.48 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhh-------hcCC
Q 006183 338 LAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNY-------NAGA 410 (657)
Q Consensus 338 ~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~-------~~G~ 410 (657)
+..=+..++..+++.+-+.++.+.. + ..++...|++-.+..++.++||+.+-...-.-++... +.|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 3444556777788888888877653 2 3567778999999999999999988554333332211 1222
Q ss_pred C-ch---------hHHHHHHHHHHHHHHH-HhhHhhhchHHHHHHHHHHHHhhcc
Q 006183 411 Q-SA---------VSNVVMASAVLVTLLF-LMPLFYYTPNVILAAIIITAVIGLI 454 (657)
Q Consensus 411 r-T~---------ls~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 454 (657)
. .. ..++.+|++.++..++ ++.+..++|.+++.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 21 5667777777777666 8899999999999887655555443
No 37
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=89.54 E-value=2.2 Score=34.73 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHH-HHHHHHHHHH--hcCCEEEEEcCChhHHHHHH
Q 006183 549 NSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGID-MVCELRKILE--KQSLQLVLANPVGSVTEKLH 625 (657)
Q Consensus 549 na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~-~L~~l~~~l~--~~gi~l~l~~~~~~v~~~L~ 625 (657)
+..++++++.+.+++. +.|++||++|..+-+|=+. ++..+.++.. ....++.+.|.++.+++.++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 3567777777766543 4599999999888888765 3344444433 23468889999999888877
Q ss_pred h
Q 006183 626 Q 626 (657)
Q Consensus 626 ~ 626 (657)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 5
No 38
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=89.03 E-value=16 Score=40.08 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=66.4
Q ss_pred HHHHHHHhhhHhH----HHhhhCCCc-----chhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCCh
Q 006183 103 LTIASLAIPQGIS----YAKLANLPP-----IVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDP 173 (657)
Q Consensus 103 ltv~~~~iPq~~a----ya~laglpp-----~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 173 (657)
++++++..-++++ .+...|-++ ..++.+-.+++++-++||+.+.-.....+.....++ . .+
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~tg-----~----~s- 294 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLTG-----V----KS- 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHhC-----C----Cc-
Confidence 3455555555444 444455432 378999999999999999876433222111111111 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhh
Q 006183 174 ILYLELAFTATFFAGLFQASLGLL-RLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGL 230 (657)
Q Consensus 174 ~~~~~~~~~~~~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~ 230 (657)
. .....+|++.+++|++ +++.+..++|.||+.|.+...--.+..+.++.+
T Consensus 295 -r------~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l 345 (406)
T TIGR03173 295 -R------YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRIL 345 (406)
T ss_pred -h------HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1336788888888887 589999999999999955433333444444433
No 39
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=88.18 E-value=0.72 Score=44.85 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=63.9
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc-----CChhHHHHHHhCCCccccCCcccccCHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN-----PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADI 649 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~-----~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~ 649 (657)
.++-+.+|+|++-|+.-.++--=.|..+.+++++.++.|+. .+..+.+.|.+.||. +.++.+|.+.-.|.+.+
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYL 83 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHH
Confidence 47899999999999998888888888899999999998863 245688899999993 55678999999999999
Q ss_pred HH
Q 006183 650 SA 651 (657)
Q Consensus 650 ~~ 651 (657)
++
T Consensus 84 ~~ 85 (262)
T KOG3040|consen 84 EE 85 (262)
T ss_pred Hh
Confidence 86
No 40
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=86.68 E-value=20 Score=39.67 Aligned_cols=118 Identities=9% Similarity=-0.063 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhH----hHHHhhhCCCc------chhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhc
Q 006183 99 IISGLTIASLAIPQG----ISYAKLANLPP------IVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVS 168 (657)
Q Consensus 99 i~aGltv~~~~iPq~----~aya~laglpp------~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~ 168 (657)
++.-+.++++.+-+. .|-+...+-++ .-|+.+-.+++++-++||+.+.-+.+-...+.-+++ ..
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~Tg-----V~- 315 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTG-----DY- 315 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcC-----Cc-
Confidence 444555555444443 33344444322 368999999999999999876644433222111111 00
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCc
Q 006183 169 YSQDPILYLELAFTATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGI 233 (657)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~ 233 (657)
.--....+|++++++|++. ++.++.-+|.||++|.+.-.--.+..++++.+-+.
T Consensus 316 -----------SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~ 370 (433)
T PRK11412 316 -----------RRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQI 370 (433)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0124467889999999885 99999999999999988777777777777766544
No 41
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=86.37 E-value=8.1 Score=44.20 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhH--hhhcCC----Cc--
Q 006183 341 AIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAV--NYNAGA----QS-- 412 (657)
Q Consensus 341 ~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v--~~~~G~----rT-- 412 (657)
=+..++..+++.+=++++.+.. .| .++...|++-=++-++-++|||.|.-.+-..++. ...+.. .+
T Consensus 24 Dl~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~ 97 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGL 97 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHH
Confidence 3445667777877777776652 22 8889999999999999999999985533322222 111111 12
Q ss_pred ---hhHHHHHHHHHHHHHHH-HhhHhhhchHHHHHHHHHHHHhhc
Q 006183 413 ---AVSNVVMASAVLVTLLF-LMPLFYYTPNVILAAIIITAVIGL 453 (657)
Q Consensus 413 ---~ls~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~l 453 (657)
-.+.+.+|++.++..++ ++.+.+++|.+|+.|.+--.++.+
T Consensus 98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I 142 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILI 142 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHH
Confidence 23455566666666555 889999999999988655444433
No 42
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=85.28 E-value=17 Score=39.98 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhHh----HHHhhhCCCc------chhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhc
Q 006183 99 IISGLTIASLAIPQGI----SYAKLANLPP------IVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVS 168 (657)
Q Consensus 99 i~aGltv~~~~iPq~~----aya~laglpp------~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~ 168 (657)
+..=+.++++.+-+++ +.+..+|.++ ..++.+-.+++++-++||+.+.-...........+
T Consensus 236 ~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T--------- 306 (415)
T TIGR00801 236 ILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALT--------- 306 (415)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeec---------
Confidence 3333455555555554 4455566532 37999999999999999986554433211110000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhhhC
Q 006183 169 YSQDPILYLELAFTATFFAGLFQASLGLL-RLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGLLG 232 (657)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG 232 (657)
+-. -+ .+...+|++.+++|++ +++.+...+|.||+.|.....--.+..+.++.+..
T Consensus 307 --~~~---sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~~ 363 (415)
T TIGR00801 307 --RVA---SR---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILIR 363 (415)
T ss_pred --CCC---ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 01 2557788888999988 58999999999999997776655666666665543
No 43
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=81.26 E-value=6.2 Score=34.13 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=56.2
Q ss_pred eEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHH---HhcCCEEE
Q 006183 536 FLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKIL---EKQSLQLV 612 (657)
Q Consensus 536 v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l---~~~gi~l~ 612 (657)
-.++++.|.=+=-|+..|-+.+.+|+++--+ ...+.+.+++ .+.|+++|...+|.++.+.+ .++|.++.
T Consensus 9 ~g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~ 80 (99)
T PF09345_consen 9 TGRLEISGESYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVT 80 (99)
T ss_pred CCEEEEecccCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEE
Confidence 3568899998889999999999999986522 2456788888 68999999999999998888 45677775
Q ss_pred E
Q 006183 613 L 613 (657)
Q Consensus 613 l 613 (657)
+
T Consensus 81 v 81 (99)
T PF09345_consen 81 V 81 (99)
T ss_pred E
Confidence 5
No 44
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=77.12 E-value=8 Score=42.67 Aligned_cols=159 Identities=16% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCC----CCCCCCCCCCCCC-Chhh
Q 006183 263 MGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLP----KGLNPPSSNMLSF-NGPF 337 (657)
Q Consensus 263 ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip----~g~~~p~~p~~~~-~~~~ 337 (657)
--.+.++.+...-.+++..+.+ .-.+.+++|.++.|...+ ..|.+. ...|...+|++.. ...+
T Consensus 175 ~l~la~~tl~~il~~~~f~~g~------~~~i~ILiGlv~G~~la~------~~G~vdf~~v~~a~w~~~P~~~~fg~~F 242 (451)
T COG2233 175 NLGLALVTLLIILLINRFGKGF------LRRIPILIGLVVGYLLAL------FMGMVDFSGVAEAPWFALPTPFYFGMAF 242 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHH------HhCCcCccccccCceeeCCcccCCCeee
Confidence 3334445555555555444432 457788888888888754 233222 2345566676432 2255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCC--CchhH
Q 006183 338 LAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGA--QSAVS 415 (657)
Q Consensus 338 ~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~--rT~ls 415 (657)
-..++...+.++++.+.|+++--++.++..+++.|.++.+..--.++=++++.++.- +++..|....+.|. -|+..
T Consensus 243 ~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~f--g~~p~TtfaqNiGvv~lT~v~ 320 (451)
T COG2233 243 DWGAILTMLPVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLF--GGFPNTTFAQNIGVVALTGVY 320 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhc--CCCCCCchhhceeeeeeccCC
Confidence 667778888999999999999999999999999999999999999999999999865 45666777777775 67777
Q ss_pred HHHHHHHHHHHHHHHhhHhhhchH
Q 006183 416 NVVMASAVLVTLLFLMPLFYYTPN 439 (657)
Q Consensus 416 ~iv~a~~~ll~ll~l~~l~~~iP~ 439 (657)
+-.........+. ++..+|+
T Consensus 321 Sr~V~~~aavili----~lgl~pk 340 (451)
T COG2233 321 SRYVIAGAAVILI----LLGLFPK 340 (451)
T ss_pred hhHHHHHHHHHHH----HHHhhHH
Confidence 7665554444443 3445665
No 45
>PRK11660 putative transporter; Provisional
Probab=74.59 E-value=53 Score=37.85 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=116.4
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcC
Q 006183 330 MLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAG 409 (657)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G 409 (657)
+++.....+..++.++++..+.++....+.++..+++.+.+-+.--.=.+-=++.++|++-++-..+-+..+.....+++
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~ 353 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSP 353 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcH
Confidence 33444567888899998888888888888777778888888888777788889999999988777677788888888888
Q ss_pred CCchhHHHHHHHHHHHH--HHHHhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhcCccceehhh-hhhhhheecccc
Q 006183 410 AQSAVSNVVMASAVLVT--LLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDFLACS-CSFFGVLFISVP 486 (657)
Q Consensus 410 ~rT~ls~iv~a~~~ll~--ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~i~~-~t~~~~~~~~~~ 486 (657)
-.+=.++++..+.+++. ++-.-|.-..=+.-+..++-+.-.-.+.+ .+++..|.+..-+++++ .+.+.-+..|+.
T Consensus 354 la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~ 431 (568)
T PRK11660 354 ISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD--LLRHAPKDDIIVMLLCMSLTVLFDMVIAIS 431 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888877766555 33344444444444445544432222222 22333344445565444 466667888999
Q ss_pred hhhHHHHHHHHHHH
Q 006183 487 LGLAIAVGVSVFKI 500 (657)
Q Consensus 487 ~Gl~~gv~~sl~~~ 500 (657)
.|+++++++-+...
T Consensus 432 ~Gi~~s~~~~~~~~ 445 (568)
T PRK11660 432 VGIVLASLLFMRRI 445 (568)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766444
No 46
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=73.32 E-value=1e+02 Score=31.18 Aligned_cols=54 Identities=30% Similarity=0.549 Sum_probs=40.4
Q ss_pred hhhhHhhHHHHHHHHHHHhhhHhHHHhhh---CCCcchhHHHhhhhhHhhhhccCCcccccc
Q 006183 92 LKLFRSDIISGLTIASLAIPQGISYAKLA---NLPPIVGLYSSFVPPLIYSILGSSRHLGVG 150 (657)
Q Consensus 92 ~~~l~~Di~aGltv~~~~iPq~~aya~la---glpp~~GL~ss~v~~liy~~~Gss~~~~~G 150 (657)
.+++++.+.+++-+.+-.+|-|++|+.++ |+++ +++.+...++|+ |+|..+.+|
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA--GasQfv~i~ 65 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA--GASQFVAIG 65 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc--cHHHHHHHH
Confidence 35688999999999999999999999986 5555 455666677776 555544443
No 47
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=72.97 E-value=6.6 Score=33.08 Aligned_cols=42 Identities=12% Similarity=0.328 Sum_probs=36.6
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhc-CCEEEEEcCC
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQ-SLQLVLANPV 617 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~-gi~l~l~~~~ 617 (657)
+...++|+.++.|+.|||+..|..+.-+.+++ ++++++-+.+
T Consensus 46 ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~ 88 (112)
T COG5439 46 PSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSK 88 (112)
T ss_pred hHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCC
Confidence 56799999999999999999999999888876 7888876643
No 48
>PRK09928 choline transport protein BetT; Provisional
Probab=72.19 E-value=45 Score=38.94 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHHHHHHhcCCEEEEEc
Q 006183 587 TAIDTSGIDMVCELRKILEKQSLQLVLAN 615 (657)
Q Consensus 587 ~~IDssgl~~L~~l~~~l~~~gi~l~l~~ 615 (657)
.|+|.++.-+++|+.+|++++|.+..+..
T Consensus 547 ~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 547 RMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47999999999999999999999988864
No 49
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=69.60 E-value=28 Score=38.54 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=69.4
Q ss_pred HHHHHHHhhhHhHH----HhhhC--CCc--chhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCChH
Q 006183 103 LTIASLAIPQGISY----AKLAN--LPP--IVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPI 174 (657)
Q Consensus 103 ltv~~~~iPq~~ay----a~lag--lpp--~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 174 (657)
+..+++.+-++++- +...| .++ .-|+.+-.+++++-++||+++.-..+-.....-++
T Consensus 253 ~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T--------------- 317 (429)
T TIGR03616 253 APVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVT--------------- 317 (429)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeec---------------
Confidence 33444444455433 33444 333 37899999999999999987654432211110000
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHHHHHHHHHHHhhHh
Q 006183 175 LYLELAF-TATFFAGLFQASLGLLR-LGFIIDFLSKATLVGFMAGAAVIVSLQQLKG 229 (657)
Q Consensus 175 ~~~~~~~-~~~~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~ 229 (657)
.++. .+...+|++++++|++. ++.++..+|.||+.|.+...--.+..+.++.
T Consensus 318 ---~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 318 ---KVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 23456788888999885 8999999999999998876666677777773
No 50
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=68.70 E-value=44 Score=30.70 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=49.0
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhc---CCEEEEEcCC-------hhHHHHHHhCCCccccCCcccccCHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQ---SLQLVLANPV-------GSVTEKLHQSKVLESFGLNGLYLTVGE 644 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~---gi~l~l~~~~-------~~v~~~L~~~g~~~~~~~~~if~tv~~ 644 (657)
+++.|.+-+..- +....+.++.++++++ ++++.+-+.- ++.++.+++.|+...++... +.++
T Consensus 54 ~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~ 125 (137)
T PRK02261 54 DADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEE 125 (137)
T ss_pred CCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHH
Confidence 466777644333 4555567777777766 6777776643 45778999999865554332 7889
Q ss_pred HHHHHHHHHhh
Q 006183 645 AVADISALWKA 655 (657)
Q Consensus 645 Av~~~~~~l~~ 655 (657)
.+++.+..+++
T Consensus 126 i~~~l~~~~~~ 136 (137)
T PRK02261 126 AIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHhcc
Confidence 99988877653
No 51
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=67.83 E-value=7.4 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHhhccCHH
Q 006183 438 PNVILAAIIITAVIGLIDYQ 457 (657)
Q Consensus 438 P~~vLa~ili~~~~~li~~~ 457 (657)
|..++-+.++..+++.+++.
T Consensus 343 ~~lv~~g~i~~~gi~~i~~~ 362 (389)
T PF00860_consen 343 PLLVLFGMIMMSGIRNIDWV 362 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhHhheec
Confidence 45555555555555555443
No 52
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=66.48 E-value=17 Score=37.67 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=62.8
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP-----VGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
..++++||.+|--.-...+.--.+..+.+++.|.++.++.- +++-.+++++.|+.. ++++++|.+...+..+.+
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~ylk 100 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYLK 100 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHHH
Confidence 68999999999888888888888899999999999988643 345678899999955 788899999888887776
Q ss_pred HH
Q 006183 651 AL 652 (657)
Q Consensus 651 ~~ 652 (657)
+.
T Consensus 101 ~~ 102 (306)
T KOG2882|consen 101 KR 102 (306)
T ss_pred Hh
Confidence 54
No 53
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.96 E-value=11 Score=39.05 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=56.0
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP-----VGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
.+.+++|+.++-+-+..-+.-..+..++++++|++++++.- +.+..+.|++.|+.. ..++++.+..-+.++.+
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~--~~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG--LAEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEecHHHHHHHHHH
Confidence 57899999999887766665677888899999999987743 234557889999843 35688888777777766
Q ss_pred H
Q 006183 651 A 651 (657)
Q Consensus 651 ~ 651 (657)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 5
No 54
>PRK10444 UMP phosphatase; Provisional
Probab=64.26 E-value=15 Score=37.44 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
++.+++|+.++-+-+-.-+.--.+..+.++++|++++++.-+ .+..++|++.|+. +.+++++.+-..+.++.+
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~ 78 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLR 78 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHH
Confidence 367999999998877655666668888999999999887432 3477888888983 456678777666666665
Q ss_pred H
Q 006183 651 A 651 (657)
Q Consensus 651 ~ 651 (657)
+
T Consensus 79 ~ 79 (248)
T PRK10444 79 R 79 (248)
T ss_pred h
Confidence 4
No 55
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=63.40 E-value=1.2e+02 Score=27.64 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=48.8
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCC--EEEEEc--CChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSL--QLVLAN--PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi--~l~l~~--~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
...+++ +..|.+-...+.++.++++++|. -.++++ ..++-.+.|+..|+.+.++. =.++++-+++..+
T Consensus 54 adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~---gt~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGP---GTPIPESAIFLLK 125 (132)
T ss_pred CCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECC---CCCHHHHHHHHHH
Confidence 566665 56778888889999999998753 234555 45556778999999888843 3466666666655
Q ss_pred HH
Q 006183 652 LW 653 (657)
Q Consensus 652 ~l 653 (657)
.+
T Consensus 126 ~~ 127 (132)
T TIGR00640 126 KL 127 (132)
T ss_pred HH
Confidence 44
No 56
>PLN02645 phosphoglycolate phosphatase
Probab=62.07 E-value=28 Score=36.74 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=52.6
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
.+.+++|+.++-+-+..-+..-.+..++++++|++++++.-+ .++.++|+..|+. ...+.++.+...+....+
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l~ 105 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYLK 105 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHHH
Confidence 789999999998877665565688888899999999887432 3466778888874 334567776554444433
No 57
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=61.65 E-value=12 Score=38.32 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=54.6
Q ss_pred ccEEEEEccCCCcccHH----HHHHHHHHHHHHHhcCCEEEEEcC---C--hhHHHHHHhCCCccccCCcccccCHHHHH
Q 006183 576 LKCIILDMTAVTAIDTS----GIDMVCELRKILEKQSLQLVLANP---V--GSVTEKLHQSKVLESFGLNGLYLTVGEAV 646 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDss----gl~~L~~l~~~l~~~gi~l~l~~~---~--~~v~~~L~~~g~~~~~~~~~if~tv~~Av 646 (657)
++.+++|+.++-+-+.. .+..-.+..++++++|++++++.- + .++.+.|+..|+. +.+++++.+-..+.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~ 78 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAAR 78 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHH
Confidence 36899999998776554 455556677778889999988752 2 2578889999984 56678888877777
Q ss_pred HHHHH
Q 006183 647 ADISA 651 (657)
Q Consensus 647 ~~~~~ 651 (657)
++.++
T Consensus 79 ~~l~~ 83 (257)
T TIGR01458 79 QLLEE 83 (257)
T ss_pred HHHHh
Confidence 76654
No 58
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=58.74 E-value=18 Score=36.79 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=53.0
Q ss_pred cEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc-----CChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 577 KCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN-----PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 577 ~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~-----~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ....+.++|+..|+. ..+++++.+-..+.++..+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~--~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP--ATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEeeHHHHHHHHHHh
Confidence 578889888776655444444678888889999999874 245678889999984 3456788877777676654
No 59
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=58.20 E-value=1.4e+02 Score=26.60 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=66.9
Q ss_pred CceEEEEEccc-eeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCC--cccHHHHHHHHHHHHHHHhcCCE
Q 006183 534 SSFLILAVESP-IYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVT--AIDTSGIDMVCELRKILEKQSLQ 610 (657)
Q Consensus 534 ~~v~Iirl~g~-L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~--~IDssgl~~L~~l~~~l~~~gi~ 610 (657)
.++.|..+.+. .--.+.+...+-+....+ .....+++|-+.++ |.|-+- +.--++.+.+.+.+++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 45556665433 444555555554444322 24788999988775 555544 4566788888889999
Q ss_pred EEEEc------CChhHHHHHHhCCCccccCCcccccCHHHHHHH
Q 006183 611 LVLAN------PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVAD 648 (657)
Q Consensus 611 l~l~~------~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~ 648 (657)
+.+++ .+...++....++=-+.+ ++++|.+||+++
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~ 112 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAW 112 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhh
Confidence 99883 455577777777665555 899999999986
No 60
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=58.02 E-value=23 Score=36.92 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCccEEEEEccCCCcccHHHH----HHHHHHHHHHHhcCCEEEEEc--CChhHHHHHHhCCCcccc
Q 006183 574 STLKCIILDMTAVTAIDTSGI----DMVCELRKILEKQSLQLVLAN--PVGSVTEKLHQSKVLESF 633 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl----~~L~~l~~~l~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~ 633 (657)
+..+.+++|+.+.-.-|..-+ ....+..++++++|+++.++. .++.+.+.|+..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 457899999998766665433 578889999999999999986 677888999999998654
No 61
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=54.92 E-value=2e+02 Score=29.65 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=61.2
Q ss_pred hHhhHHHHHHHHHHHhhhHhHHHhh-hCCCcchhHHHhhhhhHhhhhccCCcccccc---hhHHHHHHHHHHHhhh----
Q 006183 95 FRSDIISGLTIASLAIPQGISYAKL-ANLPPIVGLYSSFVPPLIYSILGSSRHLGVG---PVSIASLVMGSMLGEA---- 166 (657)
Q Consensus 95 l~~Di~aGltv~~~~iPq~~aya~l-aglpp~~GL~ss~v~~liy~~~Gss~~~~~G---p~a~~sl~~~~~v~~~---- 166 (657)
+.+|+..|+.+|...=---|+.... +..||-+.+ ++.++..+...-|.++...++ |.+++...+-......
T Consensus 42 IlGD~~tGliiGatleL~~lG~~~iGga~ppD~~~-a~iigta~AI~sG~~~e~AialAvPva~Lg~~l~~~~~~~~s~~ 120 (265)
T TIGR00822 42 ILGDLKTGIILGGTLELIALGWMNVGAAQAPDPAL-ASIISTILVISGHQSIGTGIALALPLAAAGQVLTIFVRTITVLF 120 (265)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCccccccCCccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776432222222222 346666544 444554444444555555554 4444443332211111
Q ss_pred ---hc---CCCChHHH--HHHH--HHHHHHHHHHH---HHHHhhhhhhHHhhccHhHHHHHHHHHHHHHH
Q 006183 167 ---VS---YSQDPILY--LELA--FTATFFAGLFQ---ASLGLLRLGFIIDFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 167 ---~~---~~~~~~~~--~~~~--~~~~~l~Gv~~---~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i~ 223 (657)
.+ +..|.... .+.. ....++-.+.- +.+|---...+++.+|+.++.|+..+.|+.=+
T Consensus 121 ~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPA 190 (265)
T TIGR00822 121 QHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVV 190 (265)
T ss_pred HHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHH
Confidence 00 11122111 1111 11112222222 22333346788999999999998888777644
No 62
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=53.68 E-value=1.2e+02 Score=33.24 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcH-------HHHHHHHhHhhhhccCCcccccccchhhH--h-hhcC
Q 006183 340 VAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNK-------EMMAIGFMNIAGSCTSCYVTTGSFSRSAV--N-YNAG 409 (657)
Q Consensus 340 ~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~-------El~a~Gi~Niv~slfg~~p~~~s~srS~v--~-~~~G 409 (657)
..+..+++..++++..+.++.-.-++.-| .++.| -.++.|+++++=|+.-=+|...+.|--.. - ...+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~ 99 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFP 99 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcC
Confidence 44556777778888777666544443333 33333 45778889998888888998887872222 1 1122
Q ss_pred CCchh-----HHHHHHHHHHHHHH--HHhhHhhhchHHHHHHHH
Q 006183 410 AQSAV-----SNVVMASAVLVTLL--FLMPLFYYTPNVILAAII 446 (657)
Q Consensus 410 ~rT~l-----s~iv~a~~~ll~ll--~l~~l~~~iP~~vLa~il 446 (657)
. -.+ +.+++|+++++..+ .+..+.+.||.++.++++
T Consensus 100 ~-~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 100 G-ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 1 123 34455555444333 366788999999999987
No 63
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.15 E-value=54 Score=29.23 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=47.3
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhc---CCEEEEEc-CChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQ---SLQLVLAN-PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~---gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+.+.|.+-++ |......+.++.+.++++ ++.+.+.+ ..++..+.++..|+.+.+ +-=.+.++.+...+
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~---~~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF---GPGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHh
Confidence 4677777443 566677788888888887 45655554 345567889999998877 34456777776654
No 64
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=50.94 E-value=3.2e+02 Score=28.78 Aligned_cols=59 Identities=27% Similarity=0.581 Sum_probs=37.2
Q ss_pred ccccCCC-----CChhh-hHhhHHHHHHHHHHHhhhHhHHHhh-hC-CCcc---------hhHHHhhhhhHhhhhcc
Q 006183 83 ILQWGPD-----YNLKL-FRSDIISGLTIASLAIPQGISYAKL-AN-LPPI---------VGLYSSFVPPLIYSILG 142 (657)
Q Consensus 83 i~~wl~~-----y~~~~-l~~Di~aGltv~~~~iPq~~aya~l-ag-lpp~---------~GL~ss~v~~liy~~~G 142 (657)
-.+|=|. |-.-- +.+-++.-+.--++++|.|++.|.. +. .||. .=| -+.+|+++|++||
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iEl-LAgIPSVVYG~fg 138 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIEL-LAGIPSVVYGFFG 138 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHH-HhcCChhHHHHHH
Confidence 3467663 43322 5677777777778999999999973 43 5552 112 2556777776665
No 65
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=49.80 E-value=52 Score=33.13 Aligned_cols=74 Identities=12% Similarity=0.009 Sum_probs=51.6
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEE-cCChh---HHHHHHhCCCcc-ccCCcccccCHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLA-NPVGS---VTEKLHQSKVLE-SFGLNGLYLTVGEAVADI 649 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~-~~~~~---v~~~L~~~g~~~-~~~~~~if~tv~~Av~~~ 649 (657)
+.+.+++|+.++-+-...-..--.++.++++++|+++.++ |...+ ..++|+..|+.. .+ +.++.+-+.+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHH
Confidence 3789999999988766666677788899999999999885 43222 226889999864 44 35666655444444
Q ss_pred H
Q 006183 650 S 650 (657)
Q Consensus 650 ~ 650 (657)
+
T Consensus 85 ~ 85 (242)
T TIGR01459 85 L 85 (242)
T ss_pred H
Confidence 3
No 66
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.91 E-value=1.5e+02 Score=30.27 Aligned_cols=131 Identities=14% Similarity=0.022 Sum_probs=90.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCcHHHHHHHHhHhhhhccCCcccccccchhhHhhhcCCCch
Q 006183 334 NGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSAVNYNAGAQSA 413 (657)
Q Consensus 334 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~v~~~~G~rT~ 413 (657)
..+.+..++.++++..+.++...-+.++....+.+.+-+.--.=.+.=++.++||+-++...+-+..+-..+.++..-+-
T Consensus 146 ~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~ 225 (280)
T PF00916_consen 146 ILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGL 225 (280)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhH
Confidence 34567788888888888888888787877777777777776667778888999999888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHhhccCHHHHHHHhhc
Q 006183 414 VSNVVMASAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKV 465 (657)
Q Consensus 414 ls~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~ 465 (657)
+++++..++++...-++..+=..+=-+++-.+.+- .++.-+.+.+++.-|.
T Consensus 226 ~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 226 ISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRRLWRVSKA 276 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhcCChh
Confidence 89888888777666555443222223333333322 4444444444444443
No 67
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.21 E-value=2.6e+02 Score=32.00 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCC
Q 006183 549 NSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSK 628 (657)
Q Consensus 549 na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g 628 (657)
-..++-+.+.+.++++ ..+.+++|-.. +..+++++.|.+.+..+..+ .+.|+++|
T Consensus 424 G~G~~G~~la~~L~~~----------g~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~~--~~~L~~a~ 478 (558)
T PRK10669 424 GYGRVGSLLGEKLLAA----------GIPLVVIETSR-------------TRVDELRERGIRAVLGNAAN--EEIMQLAH 478 (558)
T ss_pred CCChHHHHHHHHHHHC----------CCCEEEEECCH-------------HHHHHHHHCCCeEEEcCCCC--HHHHHhcC
Confidence 3344555555555443 35678888652 23445555677777666543 45566666
Q ss_pred Cc
Q 006183 629 VL 630 (657)
Q Consensus 629 ~~ 630 (657)
+.
T Consensus 479 i~ 480 (558)
T PRK10669 479 LD 480 (558)
T ss_pred cc
Confidence 64
No 68
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.65 E-value=48 Score=30.39 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhcCC--EEEEEcCC-----hh---HHHHHHhCCCccccCCcccccCHHHHHHHHHHHHh
Q 006183 591 TSGIDMVCELRKILEKQSL--QLVLANPV-----GS---VTEKLHQSKVLESFGLNGLYLTVGEAVADISALWK 654 (657)
Q Consensus 591 ssgl~~L~~l~~~l~~~gi--~l~l~~~~-----~~---v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l~ 654 (657)
.+....+.++.+.++++|. ..++++-. ++ +++.|++.|+...|++.. +.++.+++.++.|.
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 5667778888888888764 33445432 22 456799999866665443 77888998888764
No 69
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=47.41 E-value=69 Score=31.63 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=42.5
Q ss_pred ceEEEEEccceeEech-------HHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhc
Q 006183 535 SFLILAVESPIYFANS-------TYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQ 607 (657)
Q Consensus 535 ~v~Iirl~g~L~F~na-------~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~ 607 (657)
+|.|+.++|++.-.+. +++.+.+++.- ..++++.|+|+... ..-|....+.+.+..+.+++.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~----------~d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~ 69 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDAR----------LDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAA 69 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHh----------hCCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhC
Confidence 4677888888765543 33444443321 23578999998554 567877777777777777766
Q ss_pred CCEEE
Q 006183 608 SLQLV 612 (657)
Q Consensus 608 gi~l~ 612 (657)
+..++
T Consensus 70 ~kpVi 74 (211)
T cd07019 70 GKPVV 74 (211)
T ss_pred CCCEE
Confidence 55543
No 70
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=45.99 E-value=78 Score=31.06 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=43.8
Q ss_pred eEEEEEcccee---EechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 536 FLILAVESPIY---FANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 536 v~Iirl~g~L~---F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++++|.+. -....++.+.+.+..+ .++++.|+++... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~----------d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARE----------DDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHh----------CCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57888999987 5566666666665322 2468889988864 4557777677777777776655444
No 71
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=41.22 E-value=3.7e+02 Score=27.77 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=21.5
Q ss_pred HhhhhhhHHhhccHhHHHHHHHHHHHHHH
Q 006183 195 GLLRLGFIIDFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 195 g~~rlg~l~~~lp~~vi~Gf~~g~gi~i~ 223 (657)
|---...+++.+|..++.|+..+.|+.=+
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmLPA 191 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGILPA 191 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 33346788999999999998777666543
No 72
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=40.94 E-value=53 Score=33.90 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=59.7
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC----Chh-HHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP----VGS-VTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~----~~~-v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
.+.+++|+-+|-+-+...+.-=.+..+.++++|++++|... +++ +.++|+..+..+ ...++++.|-+-+.+...
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~-~~~~~i~TS~~at~~~l~ 86 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVD-VTPDDIVTSGDATADYLA 86 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCC-CCHHHeecHHHHHHHHHH
Confidence 67899999999999999999999999999999999988632 223 777788744433 345678888777777766
Q ss_pred HHH
Q 006183 651 ALW 653 (657)
Q Consensus 651 ~~l 653 (657)
++.
T Consensus 87 ~~~ 89 (269)
T COG0647 87 KQK 89 (269)
T ss_pred hhC
Confidence 543
No 73
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=40.61 E-value=56 Score=30.48 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=38.8
Q ss_pred EEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHH
Q 006183 538 ILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILE 605 (657)
Q Consensus 538 Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~ 605 (657)
+++++|+++-...+++.+.++++-++ ++.+.|+++...-. -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d----------~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD----------NSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC----------CCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 47899999998888888888774322 35788998876433 36666555555555544
No 74
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=40.39 E-value=1.1e+02 Score=30.14 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=39.2
Q ss_pred eEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHH
Q 006183 536 FLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILE 605 (657)
Q Consensus 536 v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~ 605 (657)
|.+++++|++. .+.+++.+.+++..+ .++++.|+|+... ..-|....+.+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKD----------DKSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhh----------CCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 566777776665432 2468899998764 3346666666666655554
No 75
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=39.83 E-value=2.1e+02 Score=31.05 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhh---hhhhHH-hhccHhHHHHHHHHHHHHHH
Q 006183 181 FTATFFAGLFQASLGLL---RLGFII-DFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 181 ~~~~~l~Gv~~~~lg~~---rlg~l~-~~lp~~vi~Gf~~g~gi~i~ 223 (657)
...|+...++.+++|.+ |+.++- -++|+||+.|++.++-....
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~ 53 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLL 53 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHH
Confidence 34566667777888866 356663 46999999999987666554
No 76
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.59 E-value=2.5e+02 Score=32.61 Aligned_cols=75 Identities=8% Similarity=0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCc
Q 006183 551 TYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVL 630 (657)
Q Consensus 551 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~ 630 (657)
.++-+.+.+.++++ ..+++++|-.. +..+++++.|.+++.-+..+ .+.|+++|..
T Consensus 409 Gr~G~~va~~L~~~----------g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~ 463 (601)
T PRK03659 409 GRFGQVIGRLLMAN----------KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGAE 463 (601)
T ss_pred chHHHHHHHHHHhC----------CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCCc
Confidence 44555565555433 46889999653 33445666788888877654 4577778875
Q ss_pred cccCCcccccCHHHHHHHHH
Q 006183 631 ESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 631 ~~~~~~~if~tv~~Av~~~~ 650 (657)
+------..++.++++..++
T Consensus 464 ~A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 464 KAEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred cCCEEEEEeCCHHHHHHHHH
Confidence 42100023344455544443
No 77
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=39.39 E-value=67 Score=33.58 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCccEEEEEccCCCcccHHHH----HHHHHHHHHHHhcCCEEEEEc--CChhHHHHHHhCCCcccc
Q 006183 574 STLKCIILDMTAVTAIDTSGI----DMVCELRKILEKQSLQLVLAN--PVGSVTEKLHQSKVLESF 633 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl----~~L~~l~~~l~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~ 633 (657)
+..+.+++|+.+.-.-|-.-+ ....+..++++++|+++.++. .++.+.+.|+..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 357899999987554443322 446678888899999999984 578899999999987554
No 78
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=39.13 E-value=1.1e+02 Score=30.27 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCccEEEEEccCCCcccHHHHHHHHHHHHHHHh
Q 006183 574 STLKCIILDMTAVTAIDTSGIDMVCELRKILEK 606 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~ 606 (657)
++++.|++|.... .-|..+.+.+.+..+++++
T Consensus 41 ~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~ 72 (214)
T cd07022 41 PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA 72 (214)
T ss_pred CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc
Confidence 5689999998664 3467777777777777764
No 79
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=38.89 E-value=87 Score=30.87 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=37.7
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEE-cCC-h-hHHHHHHhCCCccccCCc
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLA-NPV-G-SVTEKLHQSKVLESFGLN 636 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~-~~~-~-~v~~~L~~~g~~~~~~~~ 636 (657)
+..+++|+..+..=|..|++.+.++.+..- +.++++. ... + .+.+.+.+.|...++.++
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 578888888776666679888888876432 4565544 322 2 244556567876666543
No 80
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=38.39 E-value=1.1e+02 Score=30.26 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=44.8
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCC
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKV 629 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~ 629 (657)
.++++.|| .....+|--++.-++++.+.++++|+-+.++. .+|+|.|..+.=
T Consensus 157 ~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITD--HNVREtL~i~dR 208 (243)
T COG1137 157 NPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD--HNVRETLDICDR 208 (243)
T ss_pred CCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEcc--ccHHHHHhhhhe
Confidence 57899999 56788999999999999999999999999984 458888887764
No 81
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=38.05 E-value=4.4e+02 Score=26.63 Aligned_cols=127 Identities=12% Similarity=0.180 Sum_probs=60.4
Q ss_pred hHhhHHHHHHHHHHHhhhHhHHHhh-hCCCcchhHHHhhhhhHhhhhccCCcccccc---hhHHHHHHHHHHHhhh----
Q 006183 95 FRSDIISGLTIASLAIPQGISYAKL-ANLPPIVGLYSSFVPPLIYSILGSSRHLGVG---PVSIASLVMGSMLGEA---- 166 (657)
Q Consensus 95 l~~Di~aGltv~~~~iPq~~aya~l-aglpp~~GL~ss~v~~liy~~~Gss~~~~~G---p~a~~sl~~~~~v~~~---- 166 (657)
+.+|+..|+.+|...=---|+.... +..||-... ++.++..+...-|.+....+. |.+.....+.......
T Consensus 42 ilGD~~tGl~iGa~leL~~lG~~~~Gga~ppd~~~-a~ii~ta~ai~sg~~~~~avalAvPv~~lg~~l~~~~~~~n~~~ 120 (238)
T PF03609_consen 42 ILGDVQTGLIIGATLELMYLGVVPIGGAVPPDYSS-AAIIGTALAILSGQDPEVAVALAVPVGILGQQLDNLLRTINSFF 120 (238)
T ss_pred HhCCHHHHHHHHHHHHHHHHhcccccCcCCCchhH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888887543223333333 335666554 455555555555544444442 3333332222211110
Q ss_pred ---hc---CCCChHHH--HHHH--HHHHHHH----HHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHH
Q 006183 167 ---VS---YSQDPILY--LELA--FTATFFA----GLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIV 222 (657)
Q Consensus 167 ---~~---~~~~~~~~--~~~~--~~~~~l~----Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i 222 (657)
.+ +..|.... .+.. ....+.. ..+.+.+|---...+.+.+|+.+..|+..+.|+.=
T Consensus 121 ~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl~vagg~LP 190 (238)
T PF03609_consen 121 VHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGLNVAGGMLP 190 (238)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 00 11121111 1111 1111222 22223333333678899999999999887776654
No 82
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=37.97 E-value=87 Score=35.19 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 574 STLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
.+++.||||= .=...|+.|-++|.+...+++++|+.++++.-++.+....++.=+.+ -|.-+.|-..||-+++..
T Consensus 489 G~P~lvVLDE-PNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~-~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 489 GDPFLVVLDE-PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ-DGRIAAFGPREEVLAKVL 563 (580)
T ss_pred CCCcEEEecC-CCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec-CChHHhcCCHHHHHHHhc
Confidence 4689999995 45779999999999999999999999999998888766555433322 134467878788777654
No 83
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=37.11 E-value=3.4e+02 Score=27.27 Aligned_cols=89 Identities=15% Similarity=0.338 Sum_probs=51.0
Q ss_pred hhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006183 119 LANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLR 198 (657)
Q Consensus 119 laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~r 198 (657)
++|=||.|||+.+.-+.+-|+++. . .+-..++++.+++.+..+. +.+.+.+-..|=+.- ...|+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~-~----~~~~~i~ai~~Ga~vAa~v----------~g~ya~taylGR~~s-~~~F~ 114 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMS-A----FGLNPILAIAIGAAVAALV----------HGVYATTAYLGRIAS-QKRFG 114 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHH-H----cCccHHHHHHHHHHHHHHH----------HHHHHHHHHhhhHhh-HhhcC
Confidence 468899999998888888888872 1 2233566777777666542 233333333332211 22222
Q ss_pred ----hhhHHhhccHhHHHHHHHHHHHHHH
Q 006183 199 ----LGFIIDFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 199 ----lg~l~~~lp~~vi~Gf~~g~gi~i~ 223 (657)
+.-+..-+|.-+-.+|++.-.+..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~F~i~~~ 143 (269)
T PF04206_consen 115 QPVYLDVLRSHTPPIMAHAFIATFCIVTI 143 (269)
T ss_pred CCeehHHHhhhchhHHHHHHHHHHHHHHH
Confidence 3444556666677777766655544
No 84
>PRK11778 putative inner membrane peptidase; Provisional
Probab=36.32 E-value=2.9e+02 Score=29.49 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=45.2
Q ss_pred cCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCc-ccHHHHHHHHHHHHHHHhcCCEE
Q 006183 533 VSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTA-IDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 533 ~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~-IDssgl~~L~~l~~~l~~~gi~l 611 (657)
.|.+.|++++|++.-.....+++.+...++..+ ++ +.|+|+...-.. ++.++.. ....+++++.|..+
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~--------~~-~aVvLridSpGG~v~~s~~a--~~~l~~lr~~~kpV 157 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK--------PG-DEVLLRLESPGGVVHGYGLA--ASQLQRLRDAGIPL 157 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc--------CC-CeEEEEEeCCCCchhHHHHH--HHHHHHHHhcCCCE
Confidence 468999999999998888888888877654331 12 579998865544 2333322 22244566666665
Q ss_pred EE
Q 006183 612 VL 613 (657)
Q Consensus 612 ~l 613 (657)
+.
T Consensus 158 va 159 (330)
T PRK11778 158 TV 159 (330)
T ss_pred EE
Confidence 54
No 85
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.75 E-value=67 Score=33.93 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=41.0
Q ss_pred CCccEEEEEccCC-----------CcccHHH-HHHHHHHHHHHHhcCCEEEEEcCC--hhHHHHHHh----CCCcccc
Q 006183 574 STLKCIILDMTAV-----------TAIDTSG-IDMVCELRKILEKQSLQLVLANPV--GSVTEKLHQ----SKVLESF 633 (657)
Q Consensus 574 ~~~~~vIlD~s~V-----------~~IDssg-l~~L~~l~~~l~~~gi~l~l~~~~--~~v~~~L~~----~g~~~~~ 633 (657)
|..|++|+|+.+. ..|.... -..+.++.++++++|+.+.++.-+ ..+.+.|+. .+..+.+
T Consensus 1 ~~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 1 PALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CCeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 3578999999752 2223221 245788899999999999998554 457788887 5654433
No 86
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=34.62 E-value=1.2e+02 Score=27.31 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=39.2
Q ss_pred HHHHHHhcCCEEEEEc-CChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 600 LRKILEKQSLQLVLAN-PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 600 l~~~l~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
+.+.+.++|++++++. ..+...+.|+..|+.-..++. .|++||++....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 5677888999999985 588899999999985444433 899999988764
No 87
>PRK10692 hypothetical protein; Provisional
Probab=32.65 E-value=1.1e+02 Score=25.68 Aligned_cols=44 Identities=27% Similarity=0.536 Sum_probs=30.0
Q ss_pred hhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcc--------hhHHHhhhhhHhhh
Q 006183 94 LFRSDIISGLTIASLAIPQGISYAKLANLPPI--------VGLYSSFVPPLIYS 139 (657)
Q Consensus 94 ~l~~Di~aGltv~~~~iPq~~aya~laglpp~--------~GL~ss~v~~liy~ 139 (657)
.+.++++-|+-..+| --+++|.+++.+|.. ..|++-|++++++.
T Consensus 7 ~~~GN~lMglGmv~M--v~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllWL 58 (92)
T PRK10692 7 SLLGNVLMGLGLVVM--VVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLWL 58 (92)
T ss_pred HHHhhHHHHHHHHHH--HHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHHH
Confidence 478888888755554 458999998866543 35666666666654
No 88
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=32.33 E-value=1.2e+02 Score=30.93 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=38.0
Q ss_pred CCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006183 574 STLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV 617 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~ 617 (657)
.+++.++|| +..+.+|..+...+.++.+++++.|..+.++.-.
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457889999 7899999999999999999999999998887553
No 89
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.98 E-value=84 Score=27.25 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHH
Q 006183 263 MGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVF 304 (657)
Q Consensus 263 ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~ 304 (657)
+.+.+++.+++.+++.++++...+...+..++++++|..-+|
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 444455556677888888876444333334445555544443
No 90
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=29.80 E-value=1e+02 Score=29.70 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=33.4
Q ss_pred eEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHH
Q 006183 536 FLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSG 593 (657)
Q Consensus 536 v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssg 593 (657)
+.+++++|.++...++++++.+++..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~-----------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE-----------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC-----------CCCeEEEEEECcCCCHHHH
Confidence 4689999999988888888877664332 2678888886655554443
No 91
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.41 E-value=5.9e+02 Score=25.86 Aligned_cols=89 Identities=20% Similarity=0.394 Sum_probs=51.7
Q ss_pred hhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006183 119 LANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLR 198 (657)
Q Consensus 119 laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~r 198 (657)
.+|=||.|||+.+.-+.+-|+++.. .+-..++++.+++.+.... +.+.+.|-..|=+- ....|+
T Consensus 51 iSGEP~aygl~~~i~g~vA~~l~~~-----~~~~~ilAi~~Ga~vaa~v----------~~~ya~tay~GR~a-sq~~F~ 114 (283)
T TIGR01113 51 ISGEPVSYGLYCGIAGAVAYVLMSY-----FGLPPLIALAVGAVIAALV----------HLAYATTAYLGRIA-SSATFN 114 (283)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-hHHhcC
Confidence 4688888888888888888888721 1334566777777666542 33333333333221 111121
Q ss_pred ----hhhHHhhccHhHHHHHHHHHHHHHH
Q 006183 199 ----LGFIIDFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 199 ----lg~l~~~lp~~vi~Gf~~g~gi~i~ 223 (657)
+.-+..-+|+-+-.+|++--.+..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~fci~~~ 143 (283)
T TIGR01113 115 QPVYLDMLTSHLGPIAGHGFIVTFCMVGV 143 (283)
T ss_pred CcchHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3445566777777777776655544
No 92
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=2.4e+02 Score=27.02 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=47.4
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcc---cc-CCcccccCHHHHHHHH
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLE---SF-GLNGLYLTVGEAVADI 649 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~---~~-~~~~if~tv~~Av~~~ 649 (657)
...+++|.++++- .-+.++++++++.|.++..+.. .-.++.++.+|+.. .+ |+.-+..+-+|.++.+
T Consensus 23 ~~~~i~dy~Gl~~------~ql~~lR~~lr~~g~~lkV~KN-tL~~rAl~~~~~e~l~~~l~Gp~ai~fs~~dp~~~~ 93 (175)
T COG0244 23 PSVVIVDYRGLTV------AQLTELRKKLREAGAKLKVVKN-TLLRRALEEAGLEGLDDLLKGPTAIAFSNEDPVAAA 93 (175)
T ss_pred CEEEEEEeCCCcH------HHHHHHHHHHHhCCcEEEEEhh-HHHHHHHHhcchhhHHHhccCCeEEEEecCCHHHHH
Confidence 5789999999875 5688899999999999988854 34788899988753 23 4443443434444443
No 93
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.55 E-value=5.6e+02 Score=29.87 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=28.0
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcc
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLE 631 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~ 631 (657)
..+++++|.+. +..+++++.|.+++.-+..+ .+.|+.+|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (621)
T PRK03562 423 GVKMTVLDHDP-------------DHIETLRKFGMKVFYGDATR--MDLLESAGAAK 464 (621)
T ss_pred CCCEEEEECCH-------------HHHHHHHhcCCeEEEEeCCC--HHHHHhcCCCc
Confidence 46788998774 33455566788887776654 35677777754
No 94
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=28.29 E-value=1.3e+02 Score=25.00 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=29.1
Q ss_pred hhHhhHHHHHHHHHHHhhhHhHHHhhhCCCcc--------hhHHHhhhhhHhhh
Q 006183 94 LFRSDIISGLTIASLAIPQGISYAKLANLPPI--------VGLYSSFVPPLIYS 139 (657)
Q Consensus 94 ~l~~Di~aGltv~~~~iPq~~aya~laglpp~--------~GL~ss~v~~liy~ 139 (657)
.+.++++-|+-..+ +--+++|++++.+|.. -.|++-|++++++.
T Consensus 7 ~~~GN~lMglGmv~--Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllWL 58 (89)
T PF10762_consen 7 FLLGNVLMGLGMVV--MVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLWL 58 (89)
T ss_pred HHHhhHHHHHhHHH--HHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHHH
Confidence 36788888875544 4468999998765542 34666666666654
No 95
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=27.98 E-value=6.6e+02 Score=25.66 Aligned_cols=88 Identities=14% Similarity=0.290 Sum_probs=50.7
Q ss_pred hhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006183 119 LANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLR 198 (657)
Q Consensus 119 laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~r 198 (657)
++|=||.|||+.+.-+.+-|+++. .+-..+.++.+++.+.... +.+.+.+-..|=+- ....|+
T Consensus 58 iSGEP~aygl~~ai~g~vA~~lm~------~~~~~vlAi~~Ga~vaa~v----------hg~ya~taylGR~a-sq~~F~ 120 (292)
T PRK00972 58 ISGEPVAYGLWCAIAGAVAWALMA------FGLNPVLAIIVGAGVAALV----------HGVYATTAYLGRIA-SQSKFG 120 (292)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHH------cCccHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHH-HHHhcC
Confidence 468888899998888888888872 2334556666676665542 33333333333221 111121
Q ss_pred ----hhhHHhhccHhHHHHHHHHHHHHHH
Q 006183 199 ----LGFIIDFLSKATLVGFMAGAAVIVS 223 (657)
Q Consensus 199 ----lg~l~~~lp~~vi~Gf~~g~gi~i~ 223 (657)
+.-+..-+|+-+-.+|++--.+..+
T Consensus 121 QPvylDvl~sh~~~i~~haFIa~Fci~~~ 149 (292)
T PRK00972 121 QPVYLDVLRSHTGPIMGHAFIATFCIVTL 149 (292)
T ss_pred CceeHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3445566777777777776655544
No 96
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.97 E-value=1.1e+02 Score=27.24 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=35.8
Q ss_pred cEEEEEccCCCc-----cc----HHHHHHHHHHHHHHHhcCCEEEEEcCCh----------hHHHHHHhCCCc
Q 006183 577 KCIILDMTAVTA-----ID----TSGIDMVCELRKILEKQSLQLVLANPVG----------SVTEKLHQSKVL 630 (657)
Q Consensus 577 ~~vIlD~s~V~~-----ID----ssgl~~L~~l~~~l~~~gi~l~l~~~~~----------~v~~~L~~~g~~ 630 (657)
|.+++|+.++-- .+ ..-..-..++.+.++++|+++.++..++ .+.+.+++.|+.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 356777766544 11 1222345668888889999999886544 477788887774
No 97
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=27.41 E-value=3.3e+02 Score=22.66 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=45.5
Q ss_pred eEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHH
Q 006183 546 YFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP--VGSVTEK 623 (657)
Q Consensus 546 ~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~ 623 (657)
.+.|.++..+.+.+ ..+..+++|...-. .+|.+.+..+++.. .+..+++... .......
T Consensus 28 ~~~~~~~~~~~~~~--------------~~~d~iiid~~~~~---~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~ 88 (112)
T PF00072_consen 28 TASSGEEALELLKK--------------HPPDLIIIDLELPD---GDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQE 88 (112)
T ss_dssp EESSHHHHHHHHHH--------------STESEEEEESSSSS---SBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHH
T ss_pred EECCHHHHHHHhcc--------------cCceEEEEEeeecc---cccccccccccccc--ccccEEEecCCCCHHHHHH
Confidence 45566666555533 24889999965443 56777777775555 5677766553 3456666
Q ss_pred HHhCCCccccC
Q 006183 624 LHQSKVLESFG 634 (657)
Q Consensus 624 L~~~g~~~~~~ 634 (657)
..+.|..+.+.
T Consensus 89 ~~~~g~~~~l~ 99 (112)
T PF00072_consen 89 ALRAGADDYLS 99 (112)
T ss_dssp HHHTTESEEEE
T ss_pred HHHCCCCEEEE
Confidence 67889887763
No 98
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=27.35 E-value=6.5e+02 Score=26.01 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=78.4
Q ss_pred CCCCh--hhhHhhHHHHHHHHHHHhhhHhHHHhh---hCCCcchh---HHHhhhhhHhhhhccCCcccccchhHHHHHHH
Q 006183 88 PDYNL--KLFRSDIISGLTIASLAIPQGISYAKL---ANLPPIVG---LYSSFVPPLIYSILGSSRHLGVGPVSIASLVM 159 (657)
Q Consensus 88 ~~y~~--~~l~~Di~aGltv~~~~iPq~~aya~l---aglpp~~G---L~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~ 159 (657)
|.++. +.+.--+++|+.=++=++=|-.||..+ -.+|-..| .-++.++.+++.=+.+.++..+|-.|+..+++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 44554 778888999999999888888888765 24555555 33566676766667788899999999999999
Q ss_pred HHHHhhhhcCCCCh----HHH---HHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHh
Q 006183 160 GSMLGEAVSYSQDP----ILY---LELAFTATFFAGLFQASLGLLRLGFIIDFLSKA 209 (657)
Q Consensus 160 ~~~v~~~~~~~~~~----~~~---~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~ 209 (657)
|..+....+..++. ... ...+...++.-..+..+--.++..-+.-++|.+
T Consensus 116 Gv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqa 172 (269)
T PF06800_consen 116 GVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQA 172 (269)
T ss_pred HHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 98887665433221 111 222223333333444444445555556666663
No 99
>PHA00736 hypothetical protein
Probab=27.00 E-value=3.2e+02 Score=21.56 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=30.2
Q ss_pred HhHHHhhhCCCcchhHHH-hhhhhHhhhhccCCcccccchhHHHHHHHH
Q 006183 113 GISYAKLANLPPIVGLYS-SFVPPLIYSILGSSRHLGVGPVSIASLVMG 160 (657)
Q Consensus 113 ~~aya~laglpp~~GL~s-s~v~~liy~~~Gss~~~~~Gp~a~~sl~~~ 160 (657)
+++.|+-.|+.|+.+..- -..-++-|-.-|.-+.+..|-.+..+++.-
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfm 52 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFM 52 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHH
Confidence 577788889999877542 223455566666666666666665555543
No 100
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=26.83 E-value=9.6e+02 Score=28.57 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCC---EEEEEcC-ChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSL---QLVLANP-VGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi---~l~l~~~-~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+.+.++| ...|.+-.....++.+.++++|. .+++.+. .++-.+.++..|++..+ +.=.++.+.++.+.
T Consensus 633 ~a~ivvl-----cs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i---~~g~d~~~~L~~l~ 704 (714)
T PRK09426 633 DVHVVGV-----SSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF---GPGTVIADAAIDLL 704 (714)
T ss_pred CCCEEEE-----eccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE---CCCCCHHHHHHHHH
Confidence 3566665 44677777778899999999874 3444443 34445789999998877 34446777777777
Q ss_pred HHHh
Q 006183 651 ALWK 654 (657)
Q Consensus 651 ~~l~ 654 (657)
+++.
T Consensus 705 ~~l~ 708 (714)
T PRK09426 705 ELLS 708 (714)
T ss_pred HHHH
Confidence 6663
No 101
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=26.77 E-value=1.1e+02 Score=30.79 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=46.6
Q ss_pred EEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc-----CChhHHHHHHh-CCCccccCCcccccCHHHHHHHHHH
Q 006183 579 IILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN-----PVGSVTEKLHQ-SKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 579 vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~-----~~~~v~~~L~~-~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
+++|+.++-.-+..-+.-=.+..+.++++|+++.+.. ...+..++|.. .|+. +..++++.+-..+.++.++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHH
Confidence 3667777665544444434566777788999998873 23456677877 5662 4456788887777777765
No 102
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.25 E-value=4.4e+02 Score=22.93 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=40.4
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhc---CCEEEEEcCChhH-HHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQ---SLQLVLANPVGSV-TEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~---gi~l~l~~~~~~v-~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+++.|.+-++ +......+.++.++++++ ++.+++.+..... .+.++..|++ .++.+-.+|++.+.
T Consensus 50 ~pdvV~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D------~~~~~~~~~~~~~~ 118 (119)
T cd02067 50 DADAIGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD------AYFGPATEAVEVLK 118 (119)
T ss_pred CCCEEEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe------EEECCHHHHHHHHh
Confidence 4677877555 333445566666666665 5677777765433 3567777764 35566678887664
No 103
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.21 E-value=2.6e+02 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHhc--CCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 590 DTSGIDMVCELRKILEKQ--SLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 590 Dssgl~~L~~l~~~l~~~--gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
|-.+...+..+.++++++ +..+..+=.+..++++|+..|+ -.++++||++.+.+
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~ 67 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAA 67 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHH
Confidence 336677888888888765 4577777777778888887653 35788888877765
No 104
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=25.95 E-value=1.8e+02 Score=24.05 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHhcCCEEEEEc-CChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 600 LRKILEKQSLQLVLAN-PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 600 l~~~l~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+.+.+.++|+++++++ ..+...+.|+..|+.-.. ..-.+++||++...
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~---~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQ---GAGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEE---STSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEE---cCCCCHHHHHHHHh
Confidence 4555666899999985 588999999999983333 14578999988764
No 105
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=25.84 E-value=2.2e+02 Score=22.16 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHhc
Q 006183 291 APLTSVILSTLIVFCLK 307 (657)
Q Consensus 291 ~~li~vi~~t~~~~~~~ 307 (657)
..-+++++|.+++|+.+
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 67889999999999865
No 106
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.04 E-value=5.8e+02 Score=28.39 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=49.7
Q ss_pred EEccceeEe---chHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcc--CCCcccHHHHHHHHHHHHHHHhcCCEEEEE
Q 006183 540 AVESPIYFA---NSTYLQERILRWIREEEEWIEANNESTLKCIILDMT--AVTAIDTSGIDMVCELRKILEKQSLQLVLA 614 (657)
Q Consensus 540 rl~g~L~F~---na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s--~V~~IDssgl~~L~~l~~~l~~~gi~l~l~ 614 (657)
....|+|.. +.+.+.+.++...++ +++..|++-+. .....|. -.+.+.+..++. .+..++.+
T Consensus 342 ~~~NPlDl~~~~~~~~~~~al~~l~~d----------p~vd~Vlv~~~~~~~~~~~~-~a~~l~~~~~~~--~~KPvv~~ 408 (447)
T TIGR02717 342 SIKNPVDVLGDATPERYAKALKTVAED----------ENVDGVVVVLTPTAMTDPEE-VAKGIIEGAKKS--NEKPVVAG 408 (447)
T ss_pred ccCCCEecCCCCCHHHHHHHHHHHHcC----------CCCCEEEEEccCCccCCHHH-HHHHHHHHHHhc--CCCcEEEE
Confidence 345666663 334444444433322 34666665444 2222222 223444433332 15566444
Q ss_pred cCC----hhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHH
Q 006183 615 NPV----GSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALW 653 (657)
Q Consensus 615 ~~~----~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l 653 (657)
... ++.++.|+..|+ -.|.+.++|++++....
T Consensus 409 ~~gg~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 409 FMGGKSVDPAKRILEENGI-------PNYTFPERAVKALSALY 444 (447)
T ss_pred ecCCccHHHHHHHHHhCCC-------CccCCHHHHHHHHHHHH
Confidence 322 346777887775 58999999999887644
No 107
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=24.79 E-value=2.7e+02 Score=28.12 Aligned_cols=36 Identities=3% Similarity=-0.012 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCEEEEEcCC------hhHHHHHHhCCCccc
Q 006183 597 VCELRKILEKQSLQLVLANPV------GSVTEKLHQSKVLES 632 (657)
Q Consensus 597 L~~l~~~l~~~gi~l~l~~~~------~~v~~~L~~~g~~~~ 632 (657)
..++.++++++|+++.++.-+ ..+...++..|+.+.
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 567788889999999987543 235555666787654
No 108
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.57 E-value=1.5e+02 Score=30.82 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=47.8
Q ss_pred EccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChh-
Q 006183 541 VESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGS- 619 (657)
Q Consensus 541 l~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~- 619 (657)
++-|- .+.+.+||.+++.|++. -+.|.+-|.-.+.+ +.|.++.+...+|++.+++.=-...
T Consensus 125 ~qPp~--~~~p~IKE~vR~~I~~A-----------~kVIAIVMD~FTD~-----dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 125 FQPPK--DGQPHIKEVVRRMIQQA-----------QKVIAIVMDVFTDV-----DIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred eCCCC--CCCCCHHHHHHHHHHHh-----------cceeEEEeeccccH-----HHHHHHHHHHHhcCCcEEEEechhcC
Confidence 44444 67888999999999876 23444444445554 5699999999999999998744333
Q ss_pred --HHHHHHhCCC
Q 006183 620 --VTEKLHQSKV 629 (657)
Q Consensus 620 --v~~~L~~~g~ 629 (657)
..++-++.++
T Consensus 187 ~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 187 PHFLEMCEKLGV 198 (284)
T ss_pred hHHHHHHHHCCC
Confidence 3344444444
No 109
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=24.23 E-value=3.3e+02 Score=27.72 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=47.0
Q ss_pred echHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEE-EEcCChhHHHHHHh
Q 006183 548 ANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLV-LANPVGSVTEKLHQ 626 (657)
Q Consensus 548 ~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~-l~~~~~~v~~~L~~ 626 (657)
.+.+.+.+.+.+.+++.++ -=.-..||||++.+..-.. . .-|..+.+.++++|...+ +.+.+++.++.-..
T Consensus 28 ~d~~~l~~~L~~ki~~aP~------FF~~~PvVlDl~~l~~~~~-~-~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 28 LDVPRLVQEMRERVTRAPK------LFGRAAVILDFGGLSQVPD-L-ATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred CCHHHHHHHHHHHHHhChH------hhCCCcEEEEchhhcCccc-c-ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 3556667777666654321 1135679999999963110 0 125668888889998776 55667776666666
Q ss_pred CCCc
Q 006183 627 SKVL 630 (657)
Q Consensus 627 ~g~~ 630 (657)
.|+-
T Consensus 100 ~gL~ 103 (248)
T PRK04596 100 LGLP 103 (248)
T ss_pred CCCC
Confidence 6763
No 110
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=23.66 E-value=3.5e+02 Score=25.11 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=38.0
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcc
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLE 631 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~ 631 (657)
...+++|+++++. .-+.++++++++.|.++.+. -+.-+++.++.+++.+
T Consensus 20 ~~v~v~~~~gl~~------~~~~~lR~~lr~~~~~~~V~-KNtL~~~Al~~t~~~~ 68 (157)
T cd05797 20 KSVVVADYRGLTV------AQLTELRKELREAGVKLKVV-KNTLAKRALEGTGFED 68 (157)
T ss_pred CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEe-hhHHHHHHHhcCCchh
Confidence 5789999998765 44677999999999999776 4455777899888644
No 111
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.50 E-value=1.5e+02 Score=27.00 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHHHHHHHhcCC---EEEEEcCC-------hhHHHHHHhCCCccccCCcccccCHHHHHHHH
Q 006183 587 TAIDTSGIDMVCELRKILEKQSL---QLVLANPV-------GSVTEKLHQSKVLESFGLNGLYLTVGEAVADI 649 (657)
Q Consensus 587 ~~IDssgl~~L~~l~~~l~~~gi---~l~l~~~~-------~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~ 649 (657)
+.+-++....+.++.+.++++|. .+.+=+.. ++.++.|++.|+...|++.. +.++.++..
T Consensus 57 S~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l 126 (128)
T cd02072 57 SSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADL 126 (128)
T ss_pred eccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHH
Confidence 33445555667777777777654 44433321 33567899999977776543 566665544
No 112
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=22.96 E-value=1.3e+02 Score=28.52 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=39.8
Q ss_pred CccEEEEEccCCCcccHHHH-------------HHHHHHHHHHHhcCCEEEEEcCChh--------------HHHHHHhC
Q 006183 575 TLKCIILDMTAVTAIDTSGI-------------DMVCELRKILEKQSLQLVLANPVGS--------------VTEKLHQS 627 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl-------------~~L~~l~~~l~~~gi~l~l~~~~~~--------------v~~~L~~~ 627 (657)
..|.+++|+.++-..+.+.. .-..++.++++++|+++.++.-++. +.+.|+..
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 46889999999755532211 2367788888999999998865443 56778888
Q ss_pred CCc
Q 006183 628 KVL 630 (657)
Q Consensus 628 g~~ 630 (657)
|+.
T Consensus 92 gl~ 94 (166)
T TIGR01664 92 KVP 94 (166)
T ss_pred CCC
Confidence 864
No 113
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=22.12 E-value=5.4e+02 Score=24.91 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=52.4
Q ss_pred CceEEEEEccceeEec-hHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEE
Q 006183 534 SSFLILAVESPIYFAN-STYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLV 612 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~n-a~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~ 612 (657)
+-+.++|+++.+.--+ .+...+++.+.+.+-.. .+..+.-+-|||..-+.==..=.+.|.++++.+-. ++++-
T Consensus 5 ~~~~~vrL~~r~~~Ld~~~~~~~~i~~~l~~W~~-----~G~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP~-~~~LS 78 (181)
T PF11340_consen 5 PPVAVVRLDGRLPRLDWPEQVLARILQLLQRWQA-----AGNNVAGIQIDFDAATSRLPAYAQFLQQLRQRLPP-DYRLS 78 (181)
T ss_pred CceeEEEEEeecccCCCCHHHHHHHHHHHHHHHH-----cCCCceEEEEecCccccchHHHHHHHHHHHHhCCC-CceEe
Confidence 4578899999888777 67777777776654321 23468899999987654333334455555555543 88998
Q ss_pred EEcCC
Q 006183 613 LANPV 617 (657)
Q Consensus 613 l~~~~ 617 (657)
+++..
T Consensus 79 IT~L~ 83 (181)
T PF11340_consen 79 ITALP 83 (181)
T ss_pred eEEeh
Confidence 88753
No 114
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=1.6e+02 Score=32.45 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=49.8
Q ss_pred CceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEE
Q 006183 534 SSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVL 613 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l 613 (657)
+.+.+++++|.++=+.++++++.+++..++ ....+|+++..=...+.+. .++.+...+..+.+..
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~-----------~a~~vvl~ldTPGGl~~sm----~~iv~~i~~s~vPV~~ 90 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEE-----------NAAAVVLELDTPGGLLDSM----RQIVRAILNSPVPVIG 90 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhC-----------CCcEEEEEecCCCchHHHH----HHHHHHHHcCCCCEEE
Confidence 578999999999999999999998875443 3678999988777766554 4566667777777543
No 115
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.93 E-value=2.2e+02 Score=23.89 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHhcCCEEEEEc-CChhHHHHHHhCCCccccCCcccccCHHHHHHHH
Q 006183 600 LRKILEKQSLQLVLAN-PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADI 649 (657)
Q Consensus 600 l~~~l~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~ 649 (657)
+.+.+.+.|+++++++ ..+...+.|+..|+.-..+.. .+++|+++..
T Consensus 55 ~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~---~~i~~vl~~~ 102 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE---GTVEEAIEAL 102 (103)
T ss_pred HHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC---CCHHHHHHhh
Confidence 4555566899999985 578899999999984443332 6889988753
No 116
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=21.75 E-value=3.7e+02 Score=24.67 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcc
Q 006183 552 YLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLE 631 (657)
Q Consensus 552 ~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~ 631 (657)
.+.+++.+++++. ...+++|+++++. .-+.++++++++.|+++.+.. +.-+++.|+.+++.+
T Consensus 5 ~~v~~l~~~l~~~-----------~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~K-Ntl~~~Al~~t~~~~ 66 (155)
T cd00379 5 ELVEELKELLKKY-----------KSVVVVDYRGLTV------AQLTELRKELRESGAKLKVGK-NTLMRRALKGTGFEE 66 (155)
T ss_pred HHHHHHHHHHHhC-----------CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEEe-hHHHHHHHcCCCccc
Confidence 3445555555543 5788999997654 447889999999999998864 444777888888644
No 117
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=21.72 E-value=1.2e+02 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=14.7
Q ss_pred hHhhHHHHHHHHH-----HHhhhHhHH
Q 006183 95 FRSDIISGLTIAS-----LAIPQGISY 116 (657)
Q Consensus 95 l~~Di~aGltv~~-----~~iPq~~ay 116 (657)
+.+-++.-++|++ -.||+++.-
T Consensus 88 iagaiiG~ivV~~lN~ta~aiP~slq~ 114 (213)
T PF14188_consen 88 IAGAIIGAIVVAFLNSTAAAIPESLQV 114 (213)
T ss_pred HHHhHHHHHHHHHHHhHHHhhhHHHHH
Confidence 4566666666665 358888765
No 118
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=2.4e+02 Score=25.36 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=32.1
Q ss_pred cEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEE
Q 006183 577 KCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVL 613 (657)
Q Consensus 577 ~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l 613 (657)
..||.|.+++..-|-+--+.++++++..++.|+.+.-
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 6899999999998888889999999999888776543
No 119
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=21.52 E-value=6.8e+02 Score=26.26 Aligned_cols=27 Identities=11% Similarity=0.334 Sum_probs=21.5
Q ss_pred EEEEccceeEechHHHHHHHHHHHHHH
Q 006183 538 ILAVESPIYFANSTYLQERILRWIREE 564 (657)
Q Consensus 538 Iirl~g~L~F~na~~~~~~i~~~i~~~ 564 (657)
.+.+++.+...++..+.+++++.++++
T Consensus 250 ~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 250 HIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 355678888899999999988877765
No 120
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=21.52 E-value=1.4e+03 Score=27.01 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=65.2
Q ss_pred ccccCCCCChhh--hHhh-HHHHHHHHHHHhhhHhHHHhh-h-----CCCcchhHHHhhhhhHhhhhccCCcccccchhH
Q 006183 83 ILQWGPDYNLKL--FRSD-IISGLTIASLAIPQGISYAKL-A-----NLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVS 153 (657)
Q Consensus 83 i~~wl~~y~~~~--l~~D-i~aGltv~~~~iPq~~aya~l-a-----glpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a 153 (657)
+-.|+|.++.-. +..+ +-.++.++++++=..++-+.. | .+++-.=|++-.+..++-++|+.= ...|..+
T Consensus 311 i~~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~--p~tgs~s 388 (665)
T KOG0236|consen 311 IPRGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCY--PTTGSFS 388 (665)
T ss_pred CCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceE--cccchhh
Confidence 345777776553 2233 233666666666556666553 2 255556678888888888888542 2223322
Q ss_pred HHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHH
Q 006183 154 IASLVMGSMLGEAVSYSQDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVI 221 (657)
Q Consensus 154 ~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~ 221 (657)
= +++.... +.. . + ...+++|++ .++.+.-++.+..|+|..++...+-.++..
T Consensus 389 R------Sav~~~s--G~~--T--~---~s~i~~~~~-vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 389 R------SAVNIKS--GGR--T--Q---VAGIVSAAL-VLLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred H------HHHHhhc--CCc--c--h---HHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 2 2222211 000 0 1 122333333 333344478899999999999866665554
No 121
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.32 E-value=4.2e+02 Score=25.76 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=66.6
Q ss_pred ceEEEEEccceeEechHHHHHHHHHHHHHH-----------HHHHhhccCCCccEEEEEccCCCcccH--HHHHHHHHHH
Q 006183 535 SFLILAVESPIYFANSTYLQERILRWIREE-----------EEWIEANNESTLKCIILDMTAVTAIDT--SGIDMVCELR 601 (657)
Q Consensus 535 ~v~Iirl~g~L~F~na~~~~~~i~~~i~~~-----------~~~~~~~~~~~~~~vIlD~s~V~~IDs--sgl~~L~~l~ 601 (657)
.-.++.+.+.-...+...+++.+.++-+.+ ....+.-..-++.+|-+|.+-+..++. .....+..+.
T Consensus 116 ~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~ 195 (240)
T cd01948 116 RRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAII 195 (240)
T ss_pred HHEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHH
Confidence 346777777766666665665555432211 000001112247899999999888875 6677888888
Q ss_pred HHHHhcCCEEEEEcC-ChhHHHHHHhCCCcc
Q 006183 602 KILEKQSLQLVLANP-VGSVTEKLHQSKVLE 631 (657)
Q Consensus 602 ~~l~~~gi~l~l~~~-~~~v~~~L~~~g~~~ 631 (657)
+.+++.|+++...++ +.+..+.++..|+.-
T Consensus 196 ~~~~~~~~~via~gVe~~~~~~~~~~~gi~~ 226 (240)
T cd01948 196 ALAHSLGLKVVAEGVETEEQLELLRELGCDY 226 (240)
T ss_pred HHHHHCCCeEEEEecCCHHHHHHHHHcCCCe
Confidence 889999999999997 567888899999843
No 122
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=21.27 E-value=2.3e+02 Score=25.62 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHH------hcCCEEEEEcCC---hhHHHHH---HhCCCccc--cCCcccccCHHHHHHHH
Q 006183 592 SGIDMVCELRKILE------KQSLQLVLANPV---GSVTEKL---HQSKVLES--FGLNGLYLTVGEAVADI 649 (657)
Q Consensus 592 sgl~~L~~l~~~l~------~~gi~l~l~~~~---~~v~~~L---~~~g~~~~--~~~~~if~tv~~Av~~~ 649 (657)
-|+++|.|+...+. ...+.+++.|.+ .+..+.+ ...|+.+. ...-.+.+|.+||++..
T Consensus 62 GG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 62 GGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp -SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 47899999988876 234499999976 4455444 45676542 22337779999998863
No 123
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=21.14 E-value=1.8e+02 Score=24.67 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.9
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCc
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVL 630 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~ 630 (657)
...+++|+++++. .-+.++++++++.|+++.+.. +.-.++.++.+++.
T Consensus 21 ~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~K-N~l~~~Al~~~~~~ 68 (100)
T PF00466_consen 21 KYVIVVDYNGLSA------NQLQELRKELRKKGGKFKVVK-NTLMKKALKNTGFE 68 (100)
T ss_dssp SEEEEEECTTSCH------HHHHHHHHHHHHHTEEEEECS-HHHHHHHHHHHHTS
T ss_pred CEEEEEEeCCCCH------HHHHHHHHHHHhcCcEEEEec-HHHHHHHHhcCccc
Confidence 5788999988876 557889999999999998774 44477778887765
No 124
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=20.96 E-value=3.1e+02 Score=30.37 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=48.0
Q ss_pred CCccEEEEE-ccCCCcccHHHHHHHHHHHHHHHh-cCCEEEEEcCCh-hHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 574 STLKCIILD-MTAVTAIDTSGIDMVCELRKILEK-QSLQLVLANPVG-SVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 574 ~~~~~vIlD-~s~V~~IDssgl~~L~~l~~~l~~-~gi~l~l~~~~~-~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
++++.|.++ |.+++..|.-+ +.+.+..+++.- .-+-+.+.+.+. +-++.|+.+|+ +. ..++|++||++.+-
T Consensus 344 ~~vk~iliNIfGGI~~cd~iA-~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~-~~----~~~~~l~~A~~~~v 417 (422)
T PLN00124 344 DKVKAILVNIFGGIMKCDVIA-SGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGM-TL----ITAEDLDDAAEKAV 417 (422)
T ss_pred CCCcEEEEEecCCccchHHHH-HHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCC-Ce----EEcCCHHHHHHHHH
Confidence 568888887 57888888877 444444454431 123344566654 46778888887 32 58899999998765
Q ss_pred H
Q 006183 651 A 651 (657)
Q Consensus 651 ~ 651 (657)
.
T Consensus 418 ~ 418 (422)
T PLN00124 418 K 418 (422)
T ss_pred H
Confidence 3
No 125
>PRK09410 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=20.68 E-value=7.1e+02 Score=27.83 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=61.1
Q ss_pred chhHHHhhhhhHhhhhc---cCCcccccchhHHHHHHHHHHHhh-hhcCCCChHH-------------HHHHHHHHHHHH
Q 006183 125 IVGLYSSFVPPLIYSIL---GSSRHLGVGPVSIASLVMGSMLGE-AVSYSQDPIL-------------YLELAFTATFFA 187 (657)
Q Consensus 125 ~~GL~ss~v~~liy~~~---Gss~~~~~Gp~a~~sl~~~~~v~~-~~~~~~~~~~-------------~~~~~~~~~~l~ 187 (657)
..|+|....|.+..-.+ -..+.+++|=........+..+.+ .+.++.++|+ ....+.++.++-
T Consensus 155 llgi~~~i~p~l~qp~~~kitg~dgiaigH~~~~~~~i~~~ig~~~G~k~~s~E~iklpkkLgff~D~~Vs~~i~M~i~f 234 (452)
T PRK09410 155 LLGLYWAISPAITQKYTRKVTGNDGFAIGHFQSLGYWLAGKVGKLFGKKEKSTEDIKLPKSLSFLRDSTVSTAITMTIFF 234 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHcCCCCeeecchhhHHHHHHHHHHHHhCCCCCCcchhhcchhhecccCcHHHHHHHHHHHH
Confidence 46777777777776543 135677888544444444333332 3333333332 122333344444
Q ss_pred HHHHHHHHhhhhhhH---HhhccHhHHHHHHHHHHHHHHHHhhHhhhC
Q 006183 188 GLFQASLGLLRLGFI---IDFLSKATLVGFMAGAAVIVSLQQLKGLLG 232 (657)
Q Consensus 188 Gv~~~~lg~~rlg~l---~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG 232 (657)
++..+..|.--+... .+++=++...|+..++|+.+++..++-+++
T Consensus 235 ~i~~~~~g~~~~~~~~~~~~~~~~~~~q~l~F~ag~~ill~GVRm~i~ 282 (452)
T PRK09410 235 LIAALFAGIEYVEEMAGGQNFIVYILMQGLTFAAGVFIILQGVRMFLA 282 (452)
T ss_pred HHHHHHcCHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 443333332222222 568889999999999999999887776654
No 126
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=20.46 E-value=5.6e+02 Score=30.20 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=63.3
Q ss_pred hhHhhHHHHHHHHHHHhhhH--------hHHHhhhCCCcchhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhh
Q 006183 94 LFRSDIISGLTIASLAIPQG--------ISYAKLANLPPIVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGE 165 (657)
Q Consensus 94 ~l~~Di~aGltv~~~~iPq~--------~aya~laglpp~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~ 165 (657)
...+|+=-|++.+++.+=.- .++..+.+.-++.|+.|.+.+.+.-.+||........|....-.
T Consensus 374 ~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l~~~~~~~~i~t~i~G~l~g~~fG~~~~~~~~p~~~~~~-------- 445 (660)
T COG1269 374 IMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGLLFV-------- 445 (660)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccccCCcccccc--------
Confidence 45789999998887543221 11122233333455555445555555666533344445443211
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHHHHHHHH
Q 006183 166 AVSYSQDPILYLELAFTATFFAGLFQASLGLLRLGFIIDFLSKATLVGFMAGAAVIV 222 (657)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gi~i 222 (657)
.+..++.........++++.|++.+.+|++ +|++-++-+.-...-+.....+..
T Consensus 446 --~~~~~~~~~~~~~m~~sl~iG~~hl~~G~~-lg~~~~~~~~~~~~a~~~~~~w~~ 499 (660)
T COG1269 446 --YHGLDEGLLFSNILILSLLIGVLHLSLGLL-LGFINRVRSGDIKGAILPQLLWLL 499 (660)
T ss_pred --cccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHhhhhHHHHH
Confidence 001111111134677899999999999999 677766655555554444444443
No 127
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=20.16 E-value=83 Score=29.13 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=10.4
Q ss_pred ccccccchhHHHHHHH
Q 006183 284 LFWVSAAAPLTSVILS 299 (657)
Q Consensus 284 ~~~i~~~~~li~vi~~ 299 (657)
.+.+|.|++++++++-
T Consensus 29 ll~lPiPGsViGMlLL 44 (141)
T PRK04125 29 FLPIPMPASVIGLVLL 44 (141)
T ss_pred HcCCCCcHHHHHHHHH
Confidence 3346777888877554
Done!