Query 006183
Match_columns 657
No_of_seqs 416 out of 2340
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.5E-29 5.2E-34 274.5 31.0 332 95-467 14-360 (429)
2 3llo_A Prestin; STAS domain, c 99.9 5.2E-25 1.8E-29 204.3 9.9 139 506-651 1-140 (143)
3 4dgh_A Sulfate permease family 99.9 8.9E-23 3E-27 186.0 10.9 128 517-656 2-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 1.8E-22 6.1E-27 185.3 9.2 130 514-656 2-132 (135)
5 2kln_A Probable sulphate-trans 99.8 8.4E-22 2.9E-26 179.6 6.1 125 521-653 1-125 (130)
6 3ny7_A YCHM protein, sulfate t 99.8 6.1E-19 2.1E-23 157.7 7.1 105 531-648 13-117 (118)
7 2ka5_A Putative anti-sigma fac 99.7 5.4E-17 1.8E-21 146.6 7.1 107 530-650 16-123 (125)
8 3t6o_A Sulfate transporter/ant 99.6 2.7E-16 9.2E-21 141.1 7.2 107 531-650 10-120 (121)
9 1th8_B Anti-sigma F factor ant 99.6 4.2E-16 1.4E-20 138.4 7.5 106 532-650 9-114 (116)
10 4hyl_A Stage II sporulation pr 99.6 4.5E-16 1.5E-20 138.6 6.7 105 532-651 10-114 (117)
11 1h4x_A SPOIIAA, anti-sigma F f 99.6 1.4E-15 4.9E-20 135.3 9.5 107 532-652 8-114 (117)
12 1sbo_A Putative anti-sigma fac 99.6 3.7E-15 1.3E-19 130.8 10.5 101 532-645 10-110 (110)
13 3oiz_A Antisigma-factor antago 99.5 6.5E-15 2.2E-19 127.1 2.8 84 534-630 15-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.4 3.7E-13 1.3E-17 120.9 11.5 108 534-654 11-119 (123)
15 3agd_A Salt-tolerant glutamina 96.1 0.01 3.5E-07 62.6 7.6 84 534-617 324-445 (456)
16 3bl4_A Uncharacterized protein 87.8 0.35 1.2E-05 42.5 3.4 102 533-651 18-123 (124)
17 3qe7_A Uracil permease; uracil 82.2 7.4 0.00025 41.6 11.3 115 99-230 228-353 (429)
18 2q3l_A Uncharacterized protein 72.3 4.1 0.00014 35.5 4.8 106 533-649 18-125 (126)
19 3pdw_A Uncharacterized hydrola 66.1 17 0.00059 35.2 8.5 56 575-630 5-65 (266)
20 2pr7_A Haloacid dehalogenase/e 55.9 15 0.0005 31.1 5.2 57 576-632 2-60 (137)
21 3dcm_X AdoMet, uncharacterized 49.7 26 0.00089 32.8 6.0 63 584-652 24-101 (192)
22 3n07_A 3-deoxy-D-manno-octulos 49.5 15 0.0005 34.4 4.4 75 575-653 24-112 (195)
23 3nvb_A Uncharacterized protein 48.0 1.1E+02 0.0038 31.8 11.2 54 573-626 219-292 (387)
24 3ghf_A Septum site-determining 46.4 87 0.003 26.8 8.5 80 535-630 16-98 (120)
25 3qgm_A P-nitrophenyl phosphata 44.8 29 0.001 33.4 6.0 56 575-630 7-67 (268)
26 2csu_A 457AA long hypothetical 43.7 88 0.003 33.4 10.0 93 542-653 342-445 (457)
27 3epr_A Hydrolase, haloacid deh 42.1 22 0.00076 34.4 4.6 56 575-630 4-64 (264)
28 3viv_A 441AA long hypothetical 40.2 30 0.001 33.4 5.1 66 532-612 6-71 (230)
29 2yxb_A Coenzyme B12-dependent 38.9 2.1E+02 0.0072 25.5 12.6 72 575-654 69-144 (161)
30 3ib6_A Uncharacterized protein 38.6 24 0.00081 32.3 4.0 58 576-633 3-80 (189)
31 3ij5_A 3-deoxy-D-manno-octulos 38.6 76 0.0026 29.8 7.6 73 575-653 48-136 (211)
32 3rst_A Signal peptide peptidas 36.3 91 0.0031 30.0 7.9 67 534-611 3-82 (240)
33 2i33_A Acid phosphatase; HAD s 35.9 24 0.00082 34.6 3.7 57 573-630 56-144 (258)
34 3n1u_A Hydrolase, HAD superfam 34.6 21 0.00071 33.0 2.9 75 575-653 18-106 (191)
35 2oyc_A PLP phosphatase, pyrido 32.6 53 0.0018 32.5 5.7 55 576-630 21-80 (306)
36 1zjj_A Hypothetical protein PH 30.5 44 0.0015 32.2 4.6 72 577-650 2-78 (263)
37 2gmw_A D,D-heptose 1,7-bisphos 29.7 34 0.0012 31.9 3.5 56 575-630 24-105 (211)
38 3kht_A Response regulator; PSI 29.7 87 0.003 26.3 6.0 76 575-653 51-129 (144)
39 1bts_A BAND 3 anion transport 29.6 28 0.00096 21.4 1.8 19 127-145 6-24 (26)
40 2j01_J 50S ribosomal protein L 28.5 1.8E+02 0.0062 26.4 8.2 48 577-631 23-70 (173)
41 2fp4_B Succinyl-COA ligase [GD 28.0 1.8E+02 0.006 30.4 8.9 70 574-652 316-391 (395)
42 2hx1_A Predicted sugar phospha 27.8 47 0.0016 32.4 4.3 73 575-649 13-91 (284)
43 3l8h_A Putative haloacid dehal 26.9 77 0.0026 28.1 5.3 57 577-633 2-87 (179)
44 3kc2_A Uncharacterized protein 26.5 37 0.0013 35.0 3.3 66 575-642 12-83 (352)
45 2iz6_A Molybdenum cofactor car 25.4 84 0.0029 28.9 5.2 57 593-654 117-173 (176)
46 2ook_A Hypothetical protein; s 24.3 1.9 6.5E-05 37.8 -6.1 107 533-650 18-126 (127)
47 2nu8_B SCS-beta, succinyl-COA 23.5 2.7E+02 0.0094 28.8 9.4 70 574-652 309-384 (388)
48 3grc_A Sensor protein, kinase; 23.0 1.4E+02 0.0048 24.8 6.0 58 575-635 50-110 (140)
49 1vjr_A 4-nitrophenylphosphatas 22.9 40 0.0014 32.5 2.6 56 574-629 15-75 (271)
50 2wm8_A MDP-1, magnesium-depend 22.1 48 0.0016 30.1 2.8 59 575-633 26-112 (187)
51 1k1e_A Deoxy-D-mannose-octulos 21.3 3.6E+02 0.012 23.8 8.8 76 575-653 7-95 (180)
52 2yx6_A Hypothetical protein PH 20.8 1.4E+02 0.0048 25.1 5.4 50 599-651 54-104 (121)
53 3hv2_A Response regulator/HD d 20.0 2.7E+02 0.0092 23.4 7.4 56 575-635 58-116 (153)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=1.5e-29 Score=274.48 Aligned_cols=332 Identities=14% Similarity=0.069 Sum_probs=250.8
Q ss_pred hHhhHHHHHHHHHHHhhhHhHHHhhhCCCcchhHHHhhhhhHhhhhccCCc-ccccchh-HHHHHHHHHHHhhhhcCCCC
Q 006183 95 FRSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSILGSSR-HLGVGPV-SIASLVMGSMLGEAVSYSQD 172 (657)
Q Consensus 95 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~ss~v~~liy~~~Gss~-~~~~Gp~-a~~sl~~~~~v~~~~~~~~~ 172 (657)
+++++++|++..+....-.++--.+-|+||..+++++.++++++++++.+| +...|+. +..+.+.. +.. .+
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g----- 86 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LG----- 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cC-----
Confidence 678999999987644333333333349999999999999999999985555 4447873 43333332 222 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--hhh--hHHhhccHhHHHHHHHHHHHHHHHHhhHhhhCccccCCCCChHHHHHH
Q 006183 173 PILYLELAFTATFFAGLFQASLGLL--RLG--FIIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIVHFTSKMQFIPVMSS 248 (657)
Q Consensus 173 ~~~~~~~~~~~~~l~Gv~~~~lg~~--rlg--~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~lG~~~~~~~~~~~~~~~~ 248 (657)
++.+..+.+++|++++++|++ |+| ++.+++|+.|++.|++.+|+.++..+++..-|... . .
T Consensus 87 ----~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~-~--~-------- 151 (429)
T 3qe7_A 87 ----YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA-E--G-------- 151 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB-T--T--------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC-C--C--------
Confidence 677889999999999999998 775 99999999888889999999999999887543211 0 0
Q ss_pred HHhccCCcchhHHHHHHHHHHHHHHHHHhhhcCCcccccccchhHHHHHHHHHHHHHhccCCCCeeEeecCC-CCCCCCC
Q 006183 249 VFNQRDEWSWKTVVMGFSFLVFLLTTRQISMRKPKLFWVSAAAPLTSVILSTLIVFCLKSKAHGISIIGHLP-KGLNPPS 327 (657)
Q Consensus 249 ~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~i~~~~~li~vi~~t~~~~~~~~~~~~v~~vg~ip-~g~~~p~ 327 (657)
+..++.++.++++++++++++.++.|++.|. ++.|+++++++++++.++..+ .+.+++.| -++|.+.
T Consensus 152 -----~~~~~~~~~la~~tl~iii~~~~~~kg~~~~-----~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~~ 219 (429)
T 3qe7_A 152 -----QTPDSKTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTLY 219 (429)
T ss_dssp -----BCCCHHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCCC
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHhcccchh-----hHHHHHHHHHHHHHHHhcCCC--cccccccccccccCCC
Confidence 1246678899999998888776655554432 378999999999999987522 22233333 2466666
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc----ccCCcHHHHHHHHhHhhhhccCCcccccccchhh
Q 006183 328 SNMLSFNGPFLAVAIKTGLVTGILSLTEGIAVGRTFAALKNY----QVDGNKEMMAIGFMNIAGSCTSCYVTTGSFSRSA 403 (657)
Q Consensus 328 ~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~a~~~~~----~~d~n~El~a~Gi~Niv~slfg~~p~~~s~srS~ 403 (657)
.|++++ .. +...+.++++.+.|++...++.+++.|+ +.+.|||+.++|++|+++++||++|+|++..+.+
T Consensus 220 ~P~f~~--~~----i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g 293 (429)
T 3qe7_A 220 TPRFEW--FA----ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIG 293 (429)
T ss_dssp CCCCCH--HH----HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH
T ss_pred CCcccH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHH
Confidence 665543 33 3334556778888888888777776654 4467999999999999999999999999878888
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHH--HhhHhhhchHHHHHHHHHHHHhhccCHHHHHHH--hhcCc
Q 006183 404 VNYNAGAQSAVSNVVMASAVLVTLLF--LMPLFYYTPNVILAAIIITAVIGLIDYQAAFRL--WKVDK 467 (657)
Q Consensus 404 v~~~~G~rT~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~k~~~ 467 (657)
+...+|++||++.+++|+++++..++ ++++++.+|.+++||+.++ .++++....++.+ .|++.
T Consensus 294 ~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~ 360 (429)
T 3qe7_A 294 VMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDY 360 (429)
T ss_dssp HHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999888877653 6789999999999997766 9999999999888 67764
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.91 E-value=5.2e-25 Score=204.26 Aligned_cols=139 Identities=22% Similarity=0.422 Sum_probs=123.7
Q ss_pred ccceeeeccccCCccccchhhhhhhhccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccC
Q 006183 506 RPNTVAMGNIPGTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTA 585 (657)
Q Consensus 506 ~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~ 585 (657)
||++.++|++|+++.|+++++|+++++.+++.|++++|+|+|+|+++|++++.+.+++. ..+..+.+||||++
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~-------~~~~~~~vvlDls~ 73 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVN-------GSENIHTVILDFTQ 73 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC------------------CCSEEEEECTT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccC-------CCCCceEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999998876531 01357899999999
Q ss_pred CCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccC-CcccccCHHHHHHHHHH
Q 006183 586 VTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFG-LNGLYLTVGEAVADISA 651 (657)
Q Consensus 586 V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~-~~~if~tv~~Av~~~~~ 651 (657)
|++||+||+++|.++.++++++|++++++++++++++.|+++|+.+.++ ++++|+|++||+++++.
T Consensus 74 v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 74 VNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSS
T ss_pred CccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887 78999999999999875
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.88 E-value=8.9e-23 Score=186.04 Aligned_cols=128 Identities=19% Similarity=0.319 Sum_probs=119.8
Q ss_pred CCccccchhhhhhhhccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHH
Q 006183 517 GTHIYQSLNRYREALRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDM 596 (657)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~ 596 (657)
+|+.|+|+++|++++..+++.|++++|+|+|+|+++|++++.+ +. +..+.||+||++|++||+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDssgl~~ 69 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGS-IQ-----------ETPQILILRLKWVPFMDITGIQT 69 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHH-SS-----------SCCSEEEEECTTCCCCCHHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHH-hc-----------cCCCEEEEECCCCCcccHHHHHH
Confidence 6789999999999999999999999999999999999998754 21 24689999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHHhhC
Q 006183 597 VCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALWKAQ 656 (657)
Q Consensus 597 L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l~~~ 656 (657)
|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++|++.+.++
T Consensus 70 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 70 LEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999998765
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.87 E-value=1.8e-22 Score=185.27 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=112.1
Q ss_pred cccCCccccchhhhhhhhccC-ceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHH
Q 006183 514 NIPGTHIYQSLNRYREALRVS-SFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTS 592 (657)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~-~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDss 592 (657)
++|+++.|+++++| ++++.| ++.|++++|+|+|+|+++|++++.+. . ++.+.+|+||++|++||+|
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDss 68 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-E-----------ETPKVFILRMRRVPVIDAT 68 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-S-----------SCCSEEEEECTTCSCBCHH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-c-----------CCCcEEEEEcCCCCccCHH
Confidence 68999999999999 677776 99999999999999999999987642 1 3478999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHHhhC
Q 006183 593 GIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALWKAQ 656 (657)
Q Consensus 593 gl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l~~~ 656 (657)
|+++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++.+..+
T Consensus 69 gl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 69 GMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVETA 132 (135)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999987643
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.84 E-value=8.4e-22 Score=179.56 Aligned_cols=125 Identities=19% Similarity=0.412 Sum_probs=114.4
Q ss_pred ccchhhhhhhhccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHH
Q 006183 521 YQSLNRYREALRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCEL 600 (657)
Q Consensus 521 ~~~~~~~~~~~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l 600 (657)
|+++++||++++.+++.|++++|+|+|+|+++|++++.+.+++. .++.+.|||||++|++||+||+++|.++
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~~ 72 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQL 72 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHHH
Confidence 68889999999999999999999999999999999998765421 1147899999999999999999999999
Q ss_pred HHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHH
Q 006183 601 RKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALW 653 (657)
Q Consensus 601 ~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l 653 (657)
.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++++.+.
T Consensus 73 ~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~ 125 (130)
T 2kln_A 73 RTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRH 125 (130)
T ss_dssp HHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC-
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998654
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.76 E-value=6.1e-19 Score=157.71 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=96.7
Q ss_pred hccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCE
Q 006183 531 LRVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQ 610 (657)
Q Consensus 531 ~~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 610 (657)
+..+++.++|++|+|||+|++++++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |++
T Consensus 13 ~~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 13 DVPDDVLVLRVIGPLFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCCTTEEEEEEESCBCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCCEEEEEEeceeEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 3457899999999999999999999986532 236899999999999999999999999999999 999
Q ss_pred EEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHH
Q 006183 611 LVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVAD 648 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~ 648 (657)
++++++++++++.|+++|+.+.++++++|+|++||+++
T Consensus 80 l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 99999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.67 E-value=5.4e-17 Score=146.58 Aligned_cols=107 Identities=17% Similarity=0.295 Sum_probs=97.6
Q ss_pred hhccCceEEEEEccceeEechHHHHHHHHH-HHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcC
Q 006183 530 ALRVSSFLILAVESPIYFANSTYLQERILR-WIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQS 608 (657)
Q Consensus 530 ~~~~~~v~Iirl~g~L~F~na~~~~~~i~~-~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~g 608 (657)
.+..+++.+++++|+|+|+|++++++.+.+ ++++ ..+.+++||++|++|||||+++|.++.++++++|
T Consensus 16 ~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~-----------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g 84 (125)
T 2ka5_A 16 YKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK-----------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSG 84 (125)
T ss_dssp EEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-----------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC-----------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcC
Confidence 355688999999999999999999999887 5432 3688999999999999999999999999999999
Q ss_pred CEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 609 LQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 609 i~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+++.++++++++++.|+++|+.+.+ .+|+|++||+++++
T Consensus 85 ~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~ 123 (125)
T 2ka5_A 85 GFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVR 123 (125)
T ss_dssp CEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTT
T ss_pred CEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhh
Confidence 9999999999999999999999888 69999999998764
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.63 E-value=2.7e-16 Score=141.11 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=96.8
Q ss_pred hccCceEEEEEccce---eEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHh-
Q 006183 531 LRVSSFLILAVESPI---YFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEK- 606 (657)
Q Consensus 531 ~~~~~v~Iirl~g~L---~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~- 606 (657)
++.+++.+++++|++ +|.|++++++++.+.+.+ .+.+.+|+||++|+||||+|+++|.++++++++
T Consensus 10 ~~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 10 THEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp EEETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred EEECCEEEEEEccccccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 345789999999998 899999999998765421 247899999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 607 QSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 607 ~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+|+++.++++++++++.|+++|+.+.+ .+|+|++||++++.
T Consensus 80 ~g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 80 QQGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAMA 120 (121)
T ss_dssp TTCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHTC
T ss_pred cCCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHhc
Confidence 999999999999999999999999988 69999999998763
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.62 E-value=4.2e-16 Score=138.36 Aligned_cols=106 Identities=15% Similarity=0.233 Sum_probs=97.0
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++.+++++|+++|.|++++++.+.+.+.+ .+.+.+++||++|++||++|+++|.++.++++++|+++
T Consensus 9 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 78 (116)
T 1th8_B 9 VKQDVLIVRLSGELDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQM 78 (116)
T ss_dssp EETTEEEEEEEEEESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCE
T ss_pred EECCEEEEEEeeeeccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeE
Confidence 45689999999999999999999998876542 13688999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
.++++++++++.|+++|+.+.+ .+|+|++||+++++
T Consensus 79 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 114 (116)
T 1th8_B 79 VVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALG 114 (116)
T ss_dssp EEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTT
T ss_pred EEEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhcc
Confidence 9999999999999999998888 79999999998875
No 10
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.61 E-value=4.5e-16 Score=138.65 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=95.7
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++.+++++|+++|.|++++++++.+++++. . .+++||++|++||++|+++|.++.++++++|+++
T Consensus 10 ~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~~-----------~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 77 (117)
T 4hyl_A 10 TEQGIDIITLHGHLDTRSSPAVQAAVLPRVTAK-----------G-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGAL 77 (117)
T ss_dssp EETTEEEEEEEEEECSSSHHHHHHHHGGGCCTT-----------C-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEE
T ss_pred EECCEEEEEEEeEEcchhHHHHHHHHHHHHccC-----------C-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999987754321 2 8999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
.++++++++++.|+.+|+.+.+ .+|+|++||+++++.
T Consensus 78 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 114 (117)
T 4hyl_A 78 VLVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGS 114 (117)
T ss_dssp EEECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC
T ss_pred EEEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhcc
Confidence 9999999999999999999988 699999999998754
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.61 E-value=1.4e-15 Score=135.26 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=96.5
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++.+++++|+++|.|++++++.+.+.+.+. ..+.+++||++|++|||+|+++|.+++++++++|+++
T Consensus 8 ~~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 77 (117)
T 1h4x_A 8 VTRETVVIRLFGELDHHAVEQIRAKISTAIFQG----------AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRT 77 (117)
T ss_dssp EETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT----------SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEE
T ss_pred eeCCEEEEEEEeEEchhhHHHHHHHHHHHHhcC----------CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEE
Confidence 456899999999999999999999998866432 3678999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISAL 652 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~ 652 (657)
.++++++++++.|+.+|+.+.+ +|+|++||++++++.
T Consensus 78 ~l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~ 114 (117)
T 1h4x_A 78 ILLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGI 114 (117)
T ss_dssp EEESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC--
T ss_pred EEEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHh
Confidence 9999999999999999998877 899999999887653
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.59 E-value=3.7e-15 Score=130.77 Aligned_cols=101 Identities=24% Similarity=0.312 Sum_probs=92.3
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
+.+++.+++++|+++|.|++++++.+.+.+.+. ..+.+++||++|++||++|++.|.++.++++++|+++
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 79 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT----------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEF 79 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC----------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999998766533 2478999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhCCCccccCCcccccCHHHH
Q 006183 612 VLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEA 645 (657)
Q Consensus 612 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~A 645 (657)
.++++++++++.|+.+|+.+.+ .+|+|++||
T Consensus 80 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~A 110 (110)
T 1sbo_A 80 ILSSLKESISRILKLTHLDKIF---KITDTVEEA 110 (110)
T ss_dssp EEESCCHHHHHHHHHTTCGGGS---CBCSSGGGC
T ss_pred EEEeCCHHHHHHHHHhCcccee---eccCCcccC
Confidence 9999999999999999999988 599999886
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.49 E-value=6.5e-15 Score=127.14 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=72.3
Q ss_pred CceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEE
Q 006183 534 SSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVL 613 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l 613 (657)
.++.+++++|+|||+|+++|++++.. . ++.+.+|+||++|++||+||+++|.++.++++++|+++.+
T Consensus 15 g~~~v~~l~G~L~f~~a~~~~~~l~~----~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 81 (99)
T 3oiz_A 15 GRERIYRVEGQLFYASVEDFMAAFDF----R---------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRI 81 (99)
T ss_dssp SSEEEEEEEEEECGGGHHHHHHTCCT----T---------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEeeEEehhhHHHHHHHHhh----c---------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45899999999999999999998752 1 2478999999999999999999999999999999999999
Q ss_pred EcCChhHHHHHHhCCCc
Q 006183 614 ANPVGSVTEKLHQSKVL 630 (657)
Q Consensus 614 ~~~~~~v~~~L~~~g~~ 630 (657)
+++++++++.|+++|+.
T Consensus 82 ~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 82 VGMNEASETMVDRLAIH 98 (99)
T ss_dssp ESHHHHHTTCC------
T ss_pred EcCCHHHHHHHHHhcCC
Confidence 99999999999999974
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.45 E-value=3.7e-13 Score=120.85 Aligned_cols=108 Identities=17% Similarity=0.264 Sum_probs=97.0
Q ss_pred CceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEE
Q 006183 534 SSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVL 613 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l 613 (657)
.++.++++.|+++..+++++++++.+.+.+ .+.+++|+|+++|+++||+|++.|.++.+.++..|.++++
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l 80 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITG----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL 80 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTS----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHh----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 458999999999999999999999886653 2579999999999999999999999999999999999999
Q ss_pred EcCChhHHHHHHhCCCc-cccCCcccccCHHHHHHHHHHHHh
Q 006183 614 ANPVGSVTEKLHQSKVL-ESFGLNGLYLTVGEAVADISALWK 654 (657)
Q Consensus 614 ~~~~~~v~~~L~~~g~~-~~~~~~~if~tv~~Av~~~~~~l~ 654 (657)
++.+|++.+.|..+|+. +.+ .+|.|+++|++.++...+
T Consensus 81 ~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 81 TGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp ECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhh
Confidence 99999999999999995 555 799999999999886543
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.07 E-value=0.01 Score=62.65 Aligned_cols=84 Identities=14% Similarity=0.326 Sum_probs=67.2
Q ss_pred CceEEEEEccceeEechHHHHHHHHHHH-------------------HHHHHH----------------H---hhccCCC
Q 006183 534 SSFLILAVESPIYFANSTYLQERILRWI-------------------REEEEW----------------I---EANNEST 575 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~na~~~~~~i~~~i-------------------~~~~~~----------------~---~~~~~~~ 575 (657)
.++.+++++|.+.|+.++++.+++.+.. +...++ . .......
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4699999999999999999988887641 000000 0 0112456
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV 617 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~ 617 (657)
.+.||||+++|+.+|-.|..++.+..++++..|.+++++.+.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 889999999999999999999999999999999999999886
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=87.75 E-value=0.35 Score=42.47 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=66.7
Q ss_pred cCceEEEEEcc--ceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCE
Q 006183 533 VSSFLILAVES--PIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQ 610 (657)
Q Consensus 533 ~~~v~Iirl~g--~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 610 (657)
.+||+.+++.+ +++-..+..+-.++.+ +.+ .+...+++|++....++..+-+.+.+-. .=-.
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~-l~~----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a 81 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQ-LCG----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QASR 81 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHH-HHT----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEE
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHH-HhC----------CCceEEEEEcccccCCCHHHHHHHhCcc-----ceeE
Confidence 37999999999 6777777777666655 222 2368999999999889988877776621 1123
Q ss_pred EEEEcCChhHHHHHHh--CCCccccCCcccccCHHHHHHHHHH
Q 006183 611 LVLANPVGSVTEKLHQ--SKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~--~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
+.+.+.++-.+ .+-+ .++...-.+.++|.|.+||.+|.++
T Consensus 82 ~Al~g~s~~~r-~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 82 IALLGSSPVDR-VLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEEECSSGGGH-HHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEEcCCHHHH-HHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 55666665322 2111 1221222334899999999999863
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=82.20 E-value=7.4 Score=41.56 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhhHhH----HHhhhCCCc------chhHHHhhhhhHhhhhccCCcccccchhHHHHHHHHHHHhhhhc
Q 006183 99 IISGLTIASLAIPQGIS----YAKLANLPP------IVGLYSSFVPPLIYSILGSSRHLGVGPVSIASLVMGSMLGEAVS 168 (657)
Q Consensus 99 i~aGltv~~~~iPq~~a----ya~laglpp------~~GL~ss~v~~liy~~~Gss~~~~~Gp~a~~sl~~~~~v~~~~~ 168 (657)
++.=++++++..-++++ .+..+|-+. .-++.+-.+++++-++||+++.-..+-... +.+. .+..
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g---~i~~--tg~~- 301 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIG---VMAI--TRVY- 301 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH---HHHH--HTBC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHH---HHHh--cCCc-
Confidence 33345555555555543 344555332 378999999999999999876555332211 1111 1110
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHHHHHHHHHHHhhHhh
Q 006183 169 YSQDPILYLELAFTATFFAGLFQASLGLL-RLGFIIDFLSKATLVGFMAGAAVIVSLQQLKGL 230 (657)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gi~i~~~ql~~~ 230 (657)
+ + .....+|++.+++|++ +++.+...+|.||+.|.+...=-.+..+.++.+
T Consensus 302 ---s-----r---~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 302 ---S-----T---WVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp ---C-----H---HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c-----h---HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1347889999999987 589999999999999954333333444444433
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=72.33 E-value=4.1 Score=35.51 Aligned_cols=106 Identities=7% Similarity=0.013 Sum_probs=64.3
Q ss_pred cCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHH--HHHHhcCCE
Q 006183 533 VSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELR--KILEKQSLQ 610 (657)
Q Consensus 533 ~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~--~~l~~~gi~ 610 (657)
.+++..+++.|.+.-..-+.+...+.+.+++. . ++.-.+.+|++.....+..++ ..++. ....++=-+
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~-------~-~~~i~ll~~~~~f~G~~~~a~--~~d~k~~~~h~~~~~R 87 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGI-------K-TPEIVALIDITELDGLSLHAA--WDDLKLGLKHGKEFKR 87 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTC-------C-SSCEEEEEEEEEEEEECHHHH--HHHHHHHHHHGGGEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhC-------C-CceEEEEEEecCCCCCCHHHH--HHHHHhhhhHHhcCCE
Confidence 35689999999997666555555555544322 1 112567789988888885543 22222 122233457
Q ss_pred EEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHH
Q 006183 611 LVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADI 649 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~ 649 (657)
+.+++-+.=++...+..+.+- -++-+.|.+.++|.+|+
T Consensus 88 iAvV~d~~W~~~~~~~~~~~~-~~evk~F~~~~~A~~Wl 125 (126)
T 2q3l_A 88 VAIIGQGELQEWATRVANWFT-PGEFKFFEDKRDALDWL 125 (126)
T ss_dssp EEEECCSHHHHHHHHHHHHHC-SSEEEEESCHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhcc-CCceeccCCHHHHHHHh
Confidence 888877665555555444321 12448889999999986
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=66.09 E-value=17 Score=35.16 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=42.2
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEE-----cCChhHHHHHHhCCCc
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLA-----NPVGSVTEKLHQSKVL 630 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~-----~~~~~v~~~L~~~g~~ 630 (657)
..|.+++|+.++-.-+......-.+..++++++|++++++ .....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3789999999986533333444567788889999999999 3445678888988884
No 20
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=55.91 E-value=15 Score=31.12 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=39.4
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccc
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP--VGSVTEKLHQSKVLES 632 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~ 632 (657)
.|.+++|+.++-.=+..-..-..++.++++++|+++.++.- ...+.+.++..|+.+.
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~ 60 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGV 60 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhh
Confidence 47899999986643344555678888999999999987644 3345566666555433
No 21
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=49.73 E-value=26 Score=32.85 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=44.6
Q ss_pred cCCCcccHHHHHHHHHHHHHHHhcC-CEEEEEcCChhHHHHHHh--------CCC------ccccCCcccccCHHHHHHH
Q 006183 584 TAVTAIDTSGIDMVCELRKILEKQS-LQLVLANPVGSVTEKLHQ--------SKV------LESFGLNGLYLTVGEAVAD 648 (657)
Q Consensus 584 s~V~~IDssgl~~L~~l~~~l~~~g-i~l~l~~~~~~v~~~L~~--------~g~------~~~~~~~~if~tv~~Av~~ 648 (657)
+.|+.+| +.++.+.++.-| -++++++|....++.-++ .|- .+.+..-++++|++||++.
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4566666 566788888888 589999998754433222 222 3455666899999999999
Q ss_pred HHHH
Q 006183 649 ISAL 652 (657)
Q Consensus 649 ~~~~ 652 (657)
|+++
T Consensus 98 ~~~~ 101 (192)
T 3dcm_X 98 IESV 101 (192)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9964
No 22
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=49.46 E-value=15 Score=34.44 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=50.6
Q ss_pred CccEEEEEccCCC-----cccHHHHHHHHHH-------HHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccccCCccccc
Q 006183 575 TLKCIILDMTAVT-----AIDTSGIDMVCEL-------RKILEKQSLQLVLANP--VGSVTEKLHQSKVLESFGLNGLYL 640 (657)
Q Consensus 575 ~~~~vIlD~s~V~-----~IDssgl~~L~~l-------~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~ 640 (657)
..+.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++.- ...+++.++..|+.+.+.. ..
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CC
Confidence 3799999998863 222222 223334 7888999999988753 5668889999998776632 24
Q ss_pred CHHHHHHHHHHHH
Q 006183 641 TVGEAVADISALW 653 (657)
Q Consensus 641 tv~~Av~~~~~~l 653 (657)
+-.++++.+.+++
T Consensus 100 ~k~~~~~~~~~~~ 112 (195)
T 3n07_A 100 DKVQAYYDICQKL 112 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 5566776666554
No 23
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=47.96 E-value=1.1e+02 Score=31.84 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=39.5
Q ss_pred CCCccEEEEEccCCCcc-----c-------------HHHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHh
Q 006183 573 ESTLKCIILDMTAVTAI-----D-------------TSGIDMVCELRKILEKQSLQLVLANP--VGSVTEKLHQ 626 (657)
Q Consensus 573 ~~~~~~vIlD~s~V~~I-----D-------------ssgl~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~L~~ 626 (657)
...+|.+|+|+.++--= | ...-.-+.++.+.++++|+++.++.- ++.+++.++.
T Consensus 219 ~~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 219 GKFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp TCCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred hCCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 45799999999886422 0 11234578889999999999998754 4567788876
No 24
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=46.41 E-value=87 Score=26.76 Aligned_cols=80 Identities=9% Similarity=0.255 Sum_probs=53.9
Q ss_pred ceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCC-cccHHHHHHHHHHHHHHHhcCCEEE-
Q 006183 535 SFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVT-AIDTSGIDMVCELRKILEKQSLQLV- 612 (657)
Q Consensus 535 ~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~-~IDssgl~~L~~l~~~l~~~gi~l~- 612 (657)
+..++++.. .+-+.+++.+.+.++..++= =.-..||||++.+. .+| +.++.+.++++|..++
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP~F------F~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vG 79 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAPAF------LKHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIG 79 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSHHH------HTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhChHh------hCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEE
Confidence 345666543 35566777777766543210 02468999999886 344 6778888999999886
Q ss_pred EEcCChh-HHHHHHhCCCc
Q 006183 613 LANPVGS-VTEKLHQSKVL 630 (657)
Q Consensus 613 l~~~~~~-v~~~L~~~g~~ 630 (657)
+.+++++ .++..+..|+-
T Consensus 80 V~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 80 VSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EESCCCHHHHHHHHHHTCC
T ss_pred EeCCCcHHHHHHHHHCCCC
Confidence 5565644 78888888884
No 25
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=44.79 E-value=29 Score=33.40 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=40.5
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHhCCCc
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP-----VGSVTEKLHQSKVL 630 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~-----~~~v~~~L~~~g~~ 630 (657)
..|.+++|+.++-.=+-.-+.--.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 378999999998553322222346677888899999999833 34678889988884
No 26
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=43.70 E-value=88 Score=33.38 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=56.5
Q ss_pred ccceeE---echHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCc--c--cHHHHHHHHHHHHHHHhcCCEEEEE
Q 006183 542 ESPIYF---ANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTA--I--DTSGIDMVCELRKILEKQSLQLVLA 614 (657)
Q Consensus 542 ~g~L~F---~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~--I--Dssgl~~L~~l~~~l~~~gi~l~l~ 614 (657)
..|+|. ++.+.+++.++..+++ +++..+++++..-.+ + |..+ +.+.+..++++ .+..++.+
T Consensus 342 ~NPlDl~g~a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~ 409 (457)
T 2csu_A 342 KNPVDMIASARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAM 409 (457)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEE
T ss_pred CCCeeCCCCCCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEE
Confidence 344554 4556677766665543 457888888753322 3 2322 33444444443 55666654
Q ss_pred cC----ChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHH
Q 006183 615 NP----VGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALW 653 (657)
Q Consensus 615 ~~----~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l 653 (657)
.. .++.++.|+..|+ -+|+|.++|++++....
T Consensus 410 ~~~g~~~~~~~~~L~~~Gi-------p~~~spe~Av~al~~l~ 445 (457)
T 2csu_A 410 FMAGYVSEKAKELLEKNGI-------PTYERPEDVASAAYALV 445 (457)
T ss_dssp EECTTTTHHHHHHHHTTTC-------CEESSHHHHHHHHHHHH
T ss_pred eCCCcchHHHHHHHHhCCC-------CccCCHHHHHHHHHHHH
Confidence 32 3457888988876 58999999999876543
No 27
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=42.12 E-value=22 Score=34.42 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=40.3
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc---C--ChhHHHHHHhCCCc
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN---P--VGSVTEKLHQSKVL 630 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~---~--~~~v~~~L~~~g~~ 630 (657)
..|.+++|+.++-.-+-..+..-.+..++++++|++++++. . ...+.+.++..|+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 37899999999854433333344566777888999999987 2 24577888888874
No 28
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=40.16 E-value=30 Score=33.39 Aligned_cols=66 Identities=8% Similarity=0.145 Sum_probs=43.1
Q ss_pred ccCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEE
Q 006183 532 RVSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQL 611 (657)
Q Consensus 532 ~~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 611 (657)
..+.+.++.++|+++-..++++.+.+++.-+ .+.+.|+|....-.. | +....++++.+++....+
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~-----------~~~~~Ivl~inspGG-~---v~~~~~i~~~i~~~~~PV 70 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPGG-R---ADAMMNIVQRIQQSKIPV 70 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHH-----------TTCSEEEEEEEBSCE-E---HHHHHHHHHHHHTCSSCE
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhc-----------CCCCEEEEEEeCCCc-C---HHHHHHHHHHHHhCCCCE
Confidence 3467999999999998888888888766422 137888886542222 2 233455666666655555
Q ss_pred E
Q 006183 612 V 612 (657)
Q Consensus 612 ~ 612 (657)
+
T Consensus 71 i 71 (230)
T 3viv_A 71 I 71 (230)
T ss_dssp E
T ss_pred E
Confidence 4
No 29
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=38.87 E-value=2.1e+02 Score=25.47 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=46.2
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcC---CEEEEEcCChh-HHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQS---LQLVLANPVGS-VTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~g---i~l~l~~~~~~-v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+...|.+-+... +.+..+.++.+.+++.| +++++-+...+ -.+.++..|.+..++++ .+.++|+++++
T Consensus 69 ~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~~ 140 (161)
T 2yxb_A 69 DVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKVR 140 (161)
T ss_dssp TCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHHH
T ss_pred CCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHHH
Confidence 467777765544 44566778888887764 77877775432 33457888886545332 24678888887
Q ss_pred HHHh
Q 006183 651 ALWK 654 (657)
Q Consensus 651 ~~l~ 654 (657)
+.++
T Consensus 141 ~~~~ 144 (161)
T 2yxb_A 141 KLAE 144 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 30
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=38.62 E-value=24 Score=32.31 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=39.8
Q ss_pred ccEEEEEccCCCcc-----------c----HHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHhCCCcccc
Q 006183 576 LKCIILDMTAVTAI-----------D----TSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLHQSKVLESF 633 (657)
Q Consensus 576 ~~~vIlD~s~V~~I-----------D----ssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~ 633 (657)
++.|++|+.++-.- + ..-..-..++.++++++|+++.++.-+ ..+.+.++..|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 67888888776511 1 122233567788889999999876532 5688889999986554
No 31
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=38.62 E-value=76 Score=29.80 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=49.7
Q ss_pred CccEEEEEccCCCcccHH--------------HHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccccCCccc
Q 006183 575 TLKCIILDMTAVTAIDTS--------------GIDMVCELRKILEKQSLQLVLANP--VGSVTEKLHQSKVLESFGLNGL 638 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDss--------------gl~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~i 638 (657)
..+.|++|+.++- +|+. -...+ +.++++++|+++.++.- ...+++.++..|+.+.+.. +
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~--~ 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG--Q 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS--C
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc--c
Confidence 3799999998872 1211 00111 67888999999998853 4578889999999776642 2
Q ss_pred ccCHHHHHHHHHHHH
Q 006183 639 YLTVGEAVADISALW 653 (657)
Q Consensus 639 f~tv~~Av~~~~~~l 653 (657)
.+-.++++.+.+++
T Consensus 123 -k~K~~~l~~~~~~l 136 (211)
T 3ij5_A 123 -SDKLVAYHELLATL 136 (211)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHc
Confidence 45567777666654
No 32
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=36.26 E-value=91 Score=30.00 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=44.1
Q ss_pred CceEEEEEccceeEe------------chHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHH
Q 006183 534 SSFLILAVESPIYFA------------NSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELR 601 (657)
Q Consensus 534 ~~v~Iirl~g~L~F~------------na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~ 601 (657)
++|.+++++|++.=. +.+.+.+.+++.-+ .+++|.|||+... ..-|..+.+.+.+..
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l 71 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKKL 71 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHHH
Confidence 468888888887543 23455555544322 2468999998764 456777777777777
Q ss_pred HHHHh-cCCEE
Q 006183 602 KILEK-QSLQL 611 (657)
Q Consensus 602 ~~l~~-~gi~l 611 (657)
+.+++ .+..+
T Consensus 72 ~~~~~~~~kPV 82 (240)
T 3rst_A 72 EEIKKETKKPI 82 (240)
T ss_dssp HHHHHHHCCCE
T ss_pred HHHHHhCCCeE
Confidence 77776 45544
No 33
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=35.93 E-value=24 Score=34.62 Aligned_cols=57 Identities=14% Similarity=0.210 Sum_probs=41.8
Q ss_pred CCCccEEEEEccCCCcccHHH---------------------------HHHHHHHHHHHHhcCCEEEEEcCCh-----hH
Q 006183 573 ESTLKCIILDMTAVTAIDTSG---------------------------IDMVCELRKILEKQSLQLVLANPVG-----SV 620 (657)
Q Consensus 573 ~~~~~~vIlD~s~V~~IDssg---------------------------l~~L~~l~~~l~~~gi~l~l~~~~~-----~v 620 (657)
....+.||+|+.++- +|+.. ..-..++.+.++++|+++.++.-++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 456899999999975 55531 1234567888999999999886554 46
Q ss_pred HHHHHhCCCc
Q 006183 621 TEKLHQSKVL 630 (657)
Q Consensus 621 ~~~L~~~g~~ 630 (657)
.+.|+..|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 7788888875
No 34
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=34.63 E-value=21 Score=33.03 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=48.5
Q ss_pred CccEEEEEccCCCc-----ccHHHHHHHHHH-------HHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccccCCccccc
Q 006183 575 TLKCIILDMTAVTA-----IDTSGIDMVCEL-------RKILEKQSLQLVLANP--VGSVTEKLHQSKVLESFGLNGLYL 640 (657)
Q Consensus 575 ~~~~vIlD~s~V~~-----IDssgl~~L~~l-------~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~ 640 (657)
..+.+++|+.++-. .|..+ ..+.++ .+.++++|+++.++.- ...+.+.++..|+.+.+.. + .
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~-k 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q-V 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-S
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-C
Confidence 48999999988642 22211 122333 7888999999998854 4568888999998776632 2 2
Q ss_pred CHHHHHHHHHHHH
Q 006183 641 TVGEAVADISALW 653 (657)
Q Consensus 641 tv~~Av~~~~~~l 653 (657)
+-.++++.+.+++
T Consensus 94 pk~~~~~~~~~~~ 106 (191)
T 3n1u_A 94 DKRSAYQHLKKTL 106 (191)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 2355665555544
No 35
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=32.56 E-value=53 Score=32.47 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=40.0
Q ss_pred ccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHhCCCc
Q 006183 576 LKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP-----VGSVTEKLHQSKVL 630 (657)
Q Consensus 576 ~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~-----~~~v~~~L~~~g~~ 630 (657)
.+.+++|+.++-+-+..-...-.+..++++++|++++++.. ...+.+.|+..|+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 78999999987765443333445667788899999998762 24567888888874
No 36
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=30.49 E-value=44 Score=32.20 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=43.1
Q ss_pred cEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 577 KCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 577 ~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+.+++|+.++-.-+..-+..-.+..++++++|+++.++..+ .++.+.|++.|+.. ..+.++.+...+.+..+
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~--~~~~i~~~~~~~~~~l~ 78 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV--SSSIIITSGLATRLYMS 78 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEEecHHHHHHHHH
Confidence 67899998876533222223445667778889999887543 34666777677742 22345555444444443
No 37
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=29.71 E-value=34 Score=31.95 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=40.7
Q ss_pred CccEEEEEccCCCcccH---------HHHHHHHHHHHHHHhcCCEEEEEcCCh-----------------hHHHHHHhCC
Q 006183 575 TLKCIILDMTAVTAIDT---------SGIDMVCELRKILEKQSLQLVLANPVG-----------------SVTEKLHQSK 628 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDs---------sgl~~L~~l~~~l~~~gi~l~l~~~~~-----------------~v~~~L~~~g 628 (657)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-+. .+++.|+..|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 36899999998766553 223346778888999999998875443 4677888888
Q ss_pred Cc
Q 006183 629 VL 630 (657)
Q Consensus 629 ~~ 630 (657)
+.
T Consensus 104 l~ 105 (211)
T 2gmw_A 104 VD 105 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 38
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.69 E-value=87 Score=26.34 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=44.6
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccccCCcc-cccCHHHHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP--VGSVTEKLHQSKVLESFGLNG-LYLTVGEAVADISA 651 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~-if~tv~~Av~~~~~ 651 (657)
++..+++|..- . |..|++.+..+++.-...+..+++... ..+........|..+.+.+.. -...+.++++.+.+
T Consensus 51 ~~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 51 KYDLIILDIGL-P--IANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCSEEEECTTC-G--GGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 47899999863 2 456777777766533334566665543 455555666788877764432 23344455554444
Q ss_pred HH
Q 006183 652 LW 653 (657)
Q Consensus 652 ~l 653 (657)
+.
T Consensus 128 ~~ 129 (144)
T 3kht_A 128 YW 129 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 39
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=29.63 E-value=28 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.0
Q ss_pred hHHHhhhhhHhhhhccCCc
Q 006183 127 GLYSSFVPPLIYSILGSSR 145 (657)
Q Consensus 127 GL~ss~v~~liy~~~Gss~ 145 (657)
.+.++.+++++|++|+.-|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 5678888888999887654
No 40
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=28.54 E-value=1.8e+02 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=37.5
Q ss_pred cEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCcc
Q 006183 577 KCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLE 631 (657)
Q Consensus 577 ~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~ 631 (657)
..+++|.++++.= -+.++++++++.|+++.+. -+.-+++.++.+++.+
T Consensus 23 ~v~v~~~~gltv~------~~~~LR~~lr~~g~~~~V~-KNtL~~~Al~~~~~~~ 70 (173)
T 2j01_J 23 SFFLVNYQGLPAK------ETHALRQALKQNGARLFVA-KNTLIRLALKELGLPE 70 (173)
T ss_pred EEEEEEcCCCCHH------HHHHHHHHHHHCCcEEEEe-hhHHHHHHHhcCCCCc
Confidence 6899999998764 4667899999999998776 4445777888888754
No 41
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=28.02 E-value=1.8e+02 Score=30.38 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=47.4
Q ss_pred CCccEEEEEc-cCCCcccHHHHHHHHHHHHHHHhcCCEE--EEEcCCh-hHHHHHHhCCCccccCCcccc--cCHHHHHH
Q 006183 574 STLKCIILDM-TAVTAIDTSGIDMVCELRKILEKQSLQL--VLANPVG-SVTEKLHQSKVLESFGLNGLY--LTVGEAVA 647 (657)
Q Consensus 574 ~~~~~vIlD~-s~V~~IDssgl~~L~~l~~~l~~~gi~l--~l~~~~~-~v~~~L~~~g~~~~~~~~~if--~tv~~Av~ 647 (657)
++++.++++. .++...|.-+ +.+.+..++++ .++.+ .+.+.+. +-++.|+.+|+ .+| +|.+||++
T Consensus 316 ~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~L~~~gl-------~~~~~~~~~~Aa~ 386 (395)
T 2fp4_B 316 PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNILTNSGL-------PITSAVDLEDAAK 386 (395)
T ss_dssp TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHHHHHTCS-------CCEECSSHHHHHH
T ss_pred CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHHHCCC-------ceEeCCCHHHHHH
Confidence 5678888765 7777777776 55555666553 34444 4566664 37788888885 355 99999998
Q ss_pred HHHHH
Q 006183 648 DISAL 652 (657)
Q Consensus 648 ~~~~~ 652 (657)
.+-..
T Consensus 387 ~~v~~ 391 (395)
T 2fp4_B 387 KAVAS 391 (395)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87643
No 42
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=27.84 E-value=47 Score=32.37 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=46.3
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHhCCCc-cccCCcccccCHHHHHHH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANP-----VGSVTEKLHQSKVL-ESFGLNGLYLTVGEAVAD 648 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~-----~~~v~~~L~~~g~~-~~~~~~~if~tv~~Av~~ 648 (657)
..+.+++|+.++-+-+...+..-.+..++++++|+++.++.. ...+.+.++..|+. ... +.++.+.+.+.+.
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~~--~~ii~~~~~~~~~ 90 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSITA--DKIISSGMITKEY 90 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCCG--GGEEEHHHHHHHH
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCCH--hhEEcHHHHHHHH
Confidence 378999999998754432222334566778889999998752 34678888888885 222 3455444433333
Q ss_pred H
Q 006183 649 I 649 (657)
Q Consensus 649 ~ 649 (657)
.
T Consensus 91 l 91 (284)
T 2hx1_A 91 I 91 (284)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=26.91 E-value=77 Score=28.12 Aligned_cols=57 Identities=26% Similarity=0.244 Sum_probs=37.7
Q ss_pred cEEEEEccCCCcccHH----------HHHHHHHHHHHHHhcCCEEEEEcCCh-----------------hHHHHHHhCC-
Q 006183 577 KCIILDMTAVTAIDTS----------GIDMVCELRKILEKQSLQLVLANPVG-----------------SVTEKLHQSK- 628 (657)
Q Consensus 577 ~~vIlD~s~V~~IDss----------gl~~L~~l~~~l~~~gi~l~l~~~~~-----------------~v~~~L~~~g- 628 (657)
|.+++|+.++-.-+.. -..-..++.++++++|+++.++.-++ .+.+.++..|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 5678888776543321 11235677788889999998875543 4577888888
Q ss_pred -Ccccc
Q 006183 629 -VLESF 633 (657)
Q Consensus 629 -~~~~~ 633 (657)
+...+
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 65544
No 44
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=26.55 E-value=37 Score=35.03 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=48.8
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHH-hCCCccccCCcccccCH
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV-----GSVTEKLH-QSKVLESFGLNGLYLTV 642 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~-----~~v~~~L~-~~g~~~~~~~~~if~tv 642 (657)
+.+.+++|+.+|-+-+...+.--.+..+.++++|+++.++..+ .+..+.|. +.|+. +.+++++.+-
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~ 83 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSH 83 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTT
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehH
Confidence 4688999999999877766666777888889999999887543 45677787 57873 3445666553
No 45
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=25.39 E-value=84 Score=28.85 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHHHHHh
Q 006183 593 GIDMVCELRKILEKQSLQLVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISALWK 654 (657)
Q Consensus 593 gl~~L~~l~~~l~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~~l~ 654 (657)
|.++|.|+...+ +.+..+++.+. +.+.+-|-...-.+.+ .+.+|.+|+++.+++.++
T Consensus 117 g~GTL~E~~~al-~~~kpV~~l~~-~~~~~gfi~~~~~~~i---~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 117 GPGTAAEVALAL-KAKKPVVLLGT-QPEAEKFFTSLDAGLV---HVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp CHHHHHHHHHHH-HTTCCEEEESC-CHHHHHHHHHHCTTTE---EEESSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHH-HhCCcEEEEcC-cccccccCChhhcCeE---EEcCCHHHHHHHHHHHHH
Confidence 568999999888 56899999987 4444444333322333 688999999999988664
No 46
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=24.31 E-value=1.9 Score=37.79 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=62.0
Q ss_pred cCceEEEEEccceeEechHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEccCCCcccHHHHHHHHHHHHHHH--hcCCE
Q 006183 533 VSSFLILAVESPIYFANSTYLQERILRWIREEEEWIEANNESTLKCIILDMTAVTAIDTSGIDMVCELRKILE--KQSLQ 610 (657)
Q Consensus 533 ~~~v~Iirl~g~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~--~~gi~ 610 (657)
.+++..+++.|.+.-..-+.+...+.+.+++ .+.++++ +.+|++.....+..++ ..++.-.++ ++=-+
T Consensus 18 ~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~-------~~~~~i~-lL~~~~~f~G~~~~A~--~~d~k~~~~h~~~~~R 87 (127)
T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQ-------VDQPKVS-LFLDATELDGWDLRAA--WDDLKLGLKHKSEFER 87 (127)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTT-------CCCSSCC-EEEEEEEEEEECTTCG--GGGCCCCCTTSCCEEE
T ss_pred CCCEEEEEEeeeECHHHHHHHHHHHHHHHhh-------ccCCCEE-EEEEccCCCCCCHHHH--HHHHHhhhhhHhcCCE
Confidence 3568999999999776666666666655443 0013455 8899988887774432 111110111 11236
Q ss_pred EEEEcCChhHHHHHHhCCCccccCCcccccCHHHHHHHHH
Q 006183 611 LVLANPVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADIS 650 (657)
Q Consensus 611 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~ 650 (657)
+.+++-+.=++...+..+.+-- ++-+.|++.++|.+|++
T Consensus 88 iAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (127)
T 2ook_A 88 VAILGNKDWQEWAAKIGSWFIA-GEIKYFEDEDDALKWLR 126 (127)
T ss_dssp EEEECCSSCCTTTTTGGGGCCE-EEEEEESCHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhCcC-CceEccCCHHHHHHHHh
Confidence 6777655433333333333211 24589999999999986
No 47
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=23.47 E-value=2.7e+02 Score=28.76 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCccEEEEEc-cCCCcccHHHHHHHHHHHHHHHhcCCEEE--EEcCCh-hHHHHHHhCCCccccCCcccc--cCHHHHHH
Q 006183 574 STLKCIILDM-TAVTAIDTSGIDMVCELRKILEKQSLQLV--LANPVG-SVTEKLHQSKVLESFGLNGLY--LTVGEAVA 647 (657)
Q Consensus 574 ~~~~~vIlD~-s~V~~IDssgl~~L~~l~~~l~~~gi~l~--l~~~~~-~v~~~L~~~g~~~~~~~~~if--~tv~~Av~ 647 (657)
++++.++++. .++...|.-+ +.+.+..+++ +.++.++ +.+.+. +-++.|+.+|+ .+| +|.++|++
T Consensus 309 ~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~l~~~g~-------~~~~~~~~~~aa~ 379 (388)
T 2nu8_B 309 DKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKKLADSGL-------NIIAAKGLTDAAQ 379 (388)
T ss_dssp TTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHHHHTTCS-------SEEECSSHHHHHH
T ss_pred CCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHHHHHCCC-------ceecCCCHHHHHH
Confidence 4577777764 7777777766 5555555555 2455544 566554 46677888774 455 99999998
Q ss_pred HHHHH
Q 006183 648 DISAL 652 (657)
Q Consensus 648 ~~~~~ 652 (657)
.+-+.
T Consensus 380 ~~v~~ 384 (388)
T 2nu8_B 380 QVVAA 384 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 48
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.02 E-value=1.4e+02 Score=24.75 Aligned_cols=58 Identities=16% Similarity=0.254 Sum_probs=37.9
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCChhHHH---HHHhCCCccccCC
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPVGSVTE---KLHQSKVLESFGL 635 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~~~v~~---~L~~~g~~~~~~~ 635 (657)
++..|++|..- . |..|.+.+.++++.-...+..+++.....+... .....|..+.+.+
T Consensus 50 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 50 PYAAMTVDLNL-P--DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 46889999863 2 455777777777654556888888876654333 3345676666643
No 49
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=22.89 E-value=40 Score=32.47 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=39.2
Q ss_pred CCccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEc---C--ChhHHHHHHhCCC
Q 006183 574 STLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLAN---P--VGSVTEKLHQSKV 629 (657)
Q Consensus 574 ~~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~---~--~~~v~~~L~~~g~ 629 (657)
.+.+.+++|+.++-.=+..-...-.+..++++++|++++++. . ...+.+.++..|+
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~ 75 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV 75 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 358899999988755332222233556778889999999887 2 3457788888776
No 50
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=22.08 E-value=48 Score=30.07 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=41.3
Q ss_pred CccEEEEEccCCCc------------------------cc-HHHHHHHHHHHHHHHhcCCEEEEEcCC---hhHHHHHHh
Q 006183 575 TLKCIILDMTAVTA------------------------ID-TSGIDMVCELRKILEKQSLQLVLANPV---GSVTEKLHQ 626 (657)
Q Consensus 575 ~~~~vIlD~s~V~~------------------------ID-ssgl~~L~~l~~~l~~~gi~l~l~~~~---~~v~~~L~~ 626 (657)
..+.+++|+.++-. .+ ..-..-..++.+.++++|+++.++.-+ ..+++.++.
T Consensus 26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~ 105 (187)
T 2wm8_A 26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLEL 105 (187)
T ss_dssp SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHH
T ss_pred ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHH
Confidence 36899999998654 11 111234567778888899999887543 457788999
Q ss_pred CCCcccc
Q 006183 627 SKVLESF 633 (657)
Q Consensus 627 ~g~~~~~ 633 (657)
.|+.+.+
T Consensus 106 ~gl~~~f 112 (187)
T 2wm8_A 106 FDLFRYF 112 (187)
T ss_dssp TTCTTTE
T ss_pred cCcHhhc
Confidence 9886655
No 51
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=21.27 E-value=3.6e+02 Score=23.78 Aligned_cols=76 Identities=16% Similarity=0.058 Sum_probs=47.2
Q ss_pred CccEEEEEccCCCcccH-----HH------HHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHhCCCccccCCcccccC
Q 006183 575 TLKCIILDMTAVTAIDT-----SG------IDMVCELRKILEKQSLQLVLANP--VGSVTEKLHQSKVLESFGLNGLYLT 641 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDs-----sg------l~~L~~l~~~l~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~t 641 (657)
..+.+++|+.++-.=+. .+ -..-.+..++++++|++++++.- ...+.+.++..|+.+.+.. -.+
T Consensus 7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~---~k~ 83 (180)
T 1k1e_A 7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG---KLE 83 (180)
T ss_dssp GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES---CSC
T ss_pred CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC---CCC
Confidence 47899999988643211 00 00123567778889999998754 3567888888888665521 234
Q ss_pred HHHHHHHHHHHH
Q 006183 642 VGEAVADISALW 653 (657)
Q Consensus 642 v~~Av~~~~~~l 653 (657)
-.++++.+.+++
T Consensus 84 k~~~~~~~~~~~ 95 (180)
T 1k1e_A 84 KETACFDLMKQA 95 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc
Confidence 456666555443
No 52
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=20.82 E-value=1.4e+02 Score=25.06 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCEEEEEc-CChhHHHHHHhCCCccccCCcccccCHHHHHHHHHH
Q 006183 599 ELRKILEKQSLQLVLAN-PVGSVTEKLHQSKVLESFGLNGLYLTVGEAVADISA 651 (657)
Q Consensus 599 ~l~~~l~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~tv~~Av~~~~~ 651 (657)
.+.+.+.++|+++++++ ..+...+.|+..|+.-..+ .-.+++||++...+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHc
Confidence 45666677899999986 5888999999999843332 23689999998764
No 53
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.01 E-value=2.7e+02 Score=23.45 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=35.2
Q ss_pred CccEEEEEccCCCcccHHHHHHHHHHHHHHHhcCCEEEEEcCC--hhHHHHHHhCC-CccccCC
Q 006183 575 TLKCIILDMTAVTAIDTSGIDMVCELRKILEKQSLQLVLANPV--GSVTEKLHQSK-VLESFGL 635 (657)
Q Consensus 575 ~~~~vIlD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~l~~~~--~~v~~~L~~~g-~~~~~~~ 635 (657)
++..+++|..-- |..|.+.+.++++. ..+..+++.... .+........| ..+.+.+
T Consensus 58 ~~dlvi~D~~l~---~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K 116 (153)
T 3hv2_A 58 EVDLVISAAHLP---QMDGPTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSK 116 (153)
T ss_dssp CCSEEEEESCCS---SSCHHHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECS
T ss_pred CCCEEEEeCCCC---cCcHHHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeC
Confidence 478999998743 45677877777663 346777666543 33444455566 7776644
Done!