Query 006184
Match_columns 657
No_of_seqs 354 out of 2095
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 19:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 7E-105 1E-109 890.7 52.8 580 1-647 5-594 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 8.8E-99 2E-103 826.1 54.8 567 10-646 10-586 (937)
3 PRK15101 protease3; Provisiona 100.0 1.3E-86 2.9E-91 794.6 62.4 569 11-647 31-607 (961)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.1E-52 2.3E-57 468.6 41.7 343 25-432 1-345 (696)
5 COG0612 PqqL Predicted Zn-depe 100.0 4.2E-51 9.2E-56 447.2 38.4 410 18-499 12-431 (438)
6 KOG0960 Mitochondrial processi 100.0 3.1E-48 6.7E-53 384.4 33.1 408 21-499 31-449 (467)
7 PTZ00432 falcilysin; Provision 100.0 5.2E-42 1.1E-46 406.4 42.0 522 98-646 115-736 (1119)
8 KOG2067 Mitochondrial processi 100.0 4.6E-42 9.9E-47 341.0 28.1 400 22-499 23-444 (472)
9 COG1026 Predicted Zn-dependent 100.0 1.6E-27 3.5E-32 264.8 32.1 517 98-646 42-603 (978)
10 PRK15101 protease3; Provisiona 100.0 4.2E-27 9.1E-32 282.1 33.4 392 22-495 521-923 (961)
11 KOG2583 Ubiquinol cytochrome c 100.0 5.8E-26 1.3E-30 227.2 35.6 392 23-499 22-420 (429)
12 KOG2019 Metalloendoprotease HM 99.9 1.5E-24 3.4E-29 228.3 28.5 516 105-648 77-639 (998)
13 PF00675 Peptidase_M16: Insuli 99.9 2.4E-24 5.1E-29 200.0 14.7 137 98-235 12-148 (149)
14 KOG0961 Predicted Zn2+-depende 99.9 3E-21 6.6E-26 203.4 27.6 382 98-500 41-457 (1022)
15 PF05193 Peptidase_M16_C: Pept 99.9 2.3E-20 4.9E-25 178.7 19.2 178 248-433 2-184 (184)
16 COG1026 Predicted Zn-dependent 99.4 3.2E-10 7E-15 127.8 28.8 398 98-520 548-976 (978)
17 PTZ00432 falcilysin; Provision 99.3 1.6E-09 3.5E-14 130.2 31.4 380 98-499 681-1103(1119)
18 KOG2019 Metalloendoprotease HM 99.0 5.1E-07 1.1E-11 97.3 28.3 378 98-499 582-985 (998)
19 COG1025 Ptr Secreted/periplasm 98.9 1.7E-06 3.6E-11 98.1 31.5 384 98-511 526-920 (937)
20 KOG0959 N-arginine dibasic con 98.7 2.7E-05 5.8E-10 90.0 31.9 357 98-485 533-906 (974)
21 PF03410 Peptidase_M44: Protei 98.0 0.00014 3.1E-09 75.9 15.3 164 106-296 26-195 (590)
22 PHA03081 putative metalloprote 97.8 0.00047 1E-08 72.2 14.8 164 106-296 26-195 (595)
23 KOG0961 Predicted Zn2+-depende 97.7 0.0024 5.1E-08 69.7 19.1 313 155-484 631-966 (1022)
24 COG0612 PqqL Predicted Zn-depe 96.8 0.017 3.6E-07 63.5 13.7 172 309-498 24-206 (438)
25 PF08367 M16C_assoc: Peptidase 96.5 0.03 6.5E-07 56.4 12.3 92 98-191 91-193 (248)
26 TIGR02110 PQQ_syn_pqqF coenzym 96.0 0.29 6.2E-06 56.4 17.5 163 319-499 19-194 (696)
27 KOG2067 Mitochondrial processi 92.1 2.4 5.3E-05 44.4 12.5 166 97-274 263-444 (472)
28 PF00675 Peptidase_M16: Insuli 87.4 12 0.00026 33.9 12.4 116 317-450 8-128 (149)
29 KOG0960 Mitochondrial processi 84.1 18 0.00038 38.2 12.4 165 98-275 270-450 (467)
30 PF09026 CENP-B_dimeris: Centr 71.5 2.1 4.6E-05 35.2 1.2 10 117-126 44-53 (101)
31 PF08367 M16C_assoc: Peptidase 60.2 1E+02 0.0022 30.9 11.1 95 315-415 85-186 (248)
32 KOG2583 Ubiquinol cytochrome c 57.2 2.7E+02 0.0058 29.8 15.1 163 316-499 38-210 (429)
33 PF09186 DUF1949: Domain of un 52.4 44 0.00095 24.4 5.4 50 133-182 4-53 (56)
34 KOG1832 HIV-1 Vpr-binding prot 52.3 6.8 0.00015 45.1 1.2 8 117-124 1466-1473(1516)
35 PF05193 Peptidase_M16_C: Pept 41.5 28 0.00062 31.9 3.6 27 473-499 1-28 (184)
36 KOG2652 RNA polymerase II tran 38.5 44 0.00095 34.5 4.4 13 96-108 303-315 (348)
37 PRK11512 DNA-binding transcrip 37.1 1.2E+02 0.0026 27.3 6.8 68 356-434 73-140 (144)
38 KOG3540 Beta amyloid precursor 36.2 30 0.00066 37.2 2.9 8 32-39 183-190 (615)
39 PRK03573 transcriptional regul 33.9 1.5E+02 0.0032 26.6 6.9 68 356-435 65-132 (144)
40 PRK11840 bifunctional sulfur c 31.5 31 0.00067 35.7 2.1 52 98-151 56-110 (326)
41 TIGR02648 rep_term_tus DNA rep 29.1 3.6E+02 0.0078 27.6 9.0 54 227-290 156-210 (300)
42 PF02724 CDC45: CDC45-like pro 27.3 38 0.00082 38.9 2.1 18 510-527 512-529 (622)
43 PRK10870 transcriptional repre 25.3 2.3E+02 0.0049 26.6 6.7 67 356-434 90-156 (176)
44 KOG0943 Predicted ubiquitin-pr 23.2 43 0.00094 40.2 1.5 39 400-438 2142-2181(3015)
45 PRK05986 cob(I)alamin adenolsy 22.2 1.1E+02 0.0024 29.3 3.9 44 239-284 124-167 (191)
46 KOG1834 Calsyntenin [Extracell 22.1 1.2E+02 0.0025 34.3 4.4 12 30-41 874-885 (952)
47 cd04923 ACT_AK-LysC-DapG-like_ 21.2 3E+02 0.0065 19.9 5.6 43 139-182 19-61 (63)
48 PF03153 TFIIA: Transcription 21.1 53 0.0011 35.2 1.6 10 98-107 332-341 (375)
49 cd04922 ACT_AKi-HSDH-ThrA_2 AC 20.4 3.3E+02 0.0072 20.0 5.7 45 139-183 20-65 (66)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-105 Score=890.67 Aligned_cols=580 Identities=45% Similarity=0.768 Sum_probs=550.3
Q ss_pred CCCCCCcccCCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccc
Q 006184 1 MGGNGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDE 80 (657)
Q Consensus 1 ~~~~~~~~~~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (657)
|+++..+...+..++|+..|.|.||.++|+|||+|+|++||.+ +
T Consensus 5 ~~~~~~~~~~~~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~t------D------------------------------ 48 (974)
T KOG0959|consen 5 MSGNIVLKREDVSIVKSLGDTREYRGIELTNGLRALLISDPKT------D------------------------------ 48 (974)
T ss_pred cccchhhhhcccccccCCCCccceeEEEecCCceEEEecCCCC------C------------------------------
Confidence 5778889999999999999999999999999999999999988 6
Q ss_pred cchhhhhcccccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCce
Q 006184 81 NDTEKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHT 160 (657)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t 160 (657)
++++++.|++||+.||.+.+|||||||||+||||+|||.||+|..||++|||+.||+|+.++|
T Consensus 49 -----------------~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T 111 (974)
T KOG0959|consen 49 -----------------KSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHT 111 (974)
T ss_pred -----------------ccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh
Q 006184 161 CYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI 240 (657)
Q Consensus 161 ~~~~~~~~~~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~ 240 (657)
+|+|++.+++|+.|||+|+++|.+|+|++++++||+.||++|++++.+++.||..++.+.++.++|||++|++||.++|.
T Consensus 112 ~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~ 191 (974)
T KOG0959|consen 112 NYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLL 191 (974)
T ss_pred eEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEe
Q 006184 241 G-AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLE 316 (657)
Q Consensus 241 ~-~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~ 316 (657)
. |+++ .++++|++||++||++++|++||+|+.++|.|+.||.+.|+.++++..+.|.+.. +|+. .++.+.+.
T Consensus 192 ~~p~~~--~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~--~p~~~e~~~~~~~v~ 267 (974)
T KOG0959|consen 192 EGPREI--DLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPE--PPFLPEELKKLVRVV 267 (974)
T ss_pred hccccc--hHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccC--CCCChHHhCcEEEEE
Confidence 4 4333 6799999999999999999999999999999999999999999999888877733 3332 78889999
Q ss_pred ecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCc
Q 006184 317 AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD 396 (657)
Q Consensus 317 ~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~ 396 (657)
|.++.+.+.|.|++|+....|+.+|.+++++|+||+|+|+|+++||++||+.++.++......++ +.|.|.+.++.
T Consensus 268 pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~as~~----~~f~v~idLtd 343 (974)
T KOG0959|consen 268 PIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFASGY----SFFNVSIDLTD 343 (974)
T ss_pred eccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCcccccc----ceEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999887554444 49999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCH
Q 006184 397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDE 476 (657)
Q Consensus 397 ~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~ 476 (657)
+|++++++|+..++++|+.|+..++..|.+++.+.+....|+|+.+..+.+++..++.+|+.||+++++.+.+++.++.+
T Consensus 344 ~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p 423 (974)
T KOG0959|consen 344 EGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDP 423 (974)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccc
Q 006184 477 EMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 556 (657)
Q Consensus 477 edI~~~~~~l~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~ 556 (657)
+.|+.++..|.|.|+++++++..+ .++++..|+||||.|.+++||.++++.|.+... +++|+||.+|.|||+||++++
T Consensus 424 ~~i~~~~~~L~p~n~~v~~~s~~~-~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~-~~~l~lP~~nefI~t~f~~~~ 501 (974)
T KOG0959|consen 424 DLIQEVLSSLVPSNMRVILVSRSF-EGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHL-NPELHLPTPNEFIPTDFSILP 501 (974)
T ss_pred HHHHHHHHhcCcccceeeeeeecc-ccccccccceeccccccccCCHHHHHHhhccCc-cccccCCCCCccccccccccc
Confidence 999999999999999999999999 788999999999999999999999999966554 799999999999999999998
Q ss_pred cccCCCCcCCCCCeEEecCCCcEEEEecCCccCCceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC---
Q 006184 557 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS--- 633 (657)
Q Consensus 557 ~~~~~~~~~~~~P~~~~~~~~~~~w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~--- 633 (657)
.+... ...|++|.+++..++|||+|+.|++||+++.+.|.+|.+..+|.+++++.+|..++.|+|+|+.|+|.
T Consensus 502 ~~~~~----~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aG 577 (974)
T KOG0959|consen 502 APIPK----LEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAG 577 (974)
T ss_pred ccCcc----ccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 77543 34899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---cccccCCCeEEehh
Q 006184 634 ---RLSFIKNEILLLPK 647 (657)
Q Consensus 634 ---~~~~~~~gi~~~~~ 647 (657)
+++.+.+|+.++|.
T Consensus 578 l~~~~~~s~~G~~~~v~ 594 (974)
T KOG0959|consen 578 LTYSLSSSSKGVELRVS 594 (974)
T ss_pred ceEEeeecCCceEEEEe
Confidence 88888999999864
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-99 Score=826.06 Aligned_cols=567 Identities=35% Similarity=0.587 Sum_probs=533.2
Q ss_pred CCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcc
Q 006184 10 SDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKG 89 (657)
Q Consensus 10 ~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (657)
.-..|.|+..|.+.|+.++|+|||+|++|+||.+ +
T Consensus 10 ~~~~i~~~~~d~r~y~~I~LpNGl~~LlisDP~a------~--------------------------------------- 44 (937)
T COG1025 10 IVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQA------D--------------------------------------- 44 (937)
T ss_pred chhhcccCcccCcceeEEECCCCceEEEecCCCC------C---------------------------------------
Confidence 3446899999999999999999999999999999 7
Q ss_pred cccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChh
Q 006184 90 KGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKRE 169 (657)
Q Consensus 90 ~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~ 169 (657)
+++|+|.|++||+.||.+.+|||||||||+||||+|||.+++|..||++|||+.||+|..++|+|+|+|.++
T Consensus 45 --------ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~~ 116 (937)
T COG1025 45 --------KSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVEND 116 (937)
T ss_pred --------ccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccH
Q 006184 170 FLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINL 249 (657)
Q Consensus 170 ~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~ 249 (657)
+|+.|||+|+++|++|+|+++.++||+++|++|+.++..++.||++++.+.+++++||++||++||.+||.. ..|..+
T Consensus 117 al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~--~p~~~v 194 (937)
T COG1025 117 ALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSD--KPGLVV 194 (937)
T ss_pred HHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhhhcc--CCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984 225589
Q ss_pred HHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCccccccc---ccceEEEEeecCcccEEEE
Q 006184 250 QEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIW---KACKLFRLEAVKDVHILDL 326 (657)
Q Consensus 250 ~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i 326 (657)
+++|++||++||+|++|++||.|+.++++|++|+.++||.||++....+..+ .|+. ..++++.+.|.++...+.|
T Consensus 195 ~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p--~p~~~d~~t~~ii~i~p~~~~~~L~i 272 (937)
T COG1025 195 QQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIP--VPVVTDEQTGKIIHIVPAKPRPRLRI 272 (937)
T ss_pred HHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCC--CCCCChHHhCceEEeccCCCCceEEE
Confidence 9999999999999999999999999999999999999999999876666552 2333 3788899999999999999
Q ss_pred EEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHH
Q 006184 327 TWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDII 406 (657)
Q Consensus 327 ~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~ 406 (657)
.|++++....++..+..++++|||++++|+|...|+++||+.++.++...... ++|.|.|++.+|.+|++++++|+
T Consensus 273 ~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~----n~~~f~is~~LT~~Gl~~~~~VI 348 (937)
T COG1025 273 YFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISG----NYGVFAISYELTDKGLAHYDRVI 348 (937)
T ss_pred EEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccC----CcceEEEEeehhhcchhhHHHHH
Confidence 99999998888889999999999999999999999999999999998876543 45699999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhc
Q 006184 407 GFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFF 486 (657)
Q Consensus 407 ~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l 486 (657)
.++|++|+.++.+++..+.|++.+++....|+|.....+++++..++.+|..++++.++.....+...++++++.++..+
T Consensus 349 ~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~~~~~~~yd~~~~~~~l~~~ 428 (937)
T COG1025 349 ALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERLALM 428 (937)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhchhhcccccCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999889998888899999999999999998
Q ss_pred CcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccccccCCCCcCC
Q 006184 487 MPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTV 566 (657)
Q Consensus 487 ~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~~~~~~~~ 566 (657)
+|+|+|++++++. ...++.+.|||++|.+.++..+.+..|+.... .+.+.||.+|+|||++|++++...+-+
T Consensus 429 ~pen~R~~lis~~---~~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~-~~~l~lP~~N~fIp~~~~~~~~~~~~~---- 500 (937)
T COG1025 429 TPENARLWLISKL---EEHDKAAYFYGFPYQVDDYTAQPLDAWQQKAD-SIELSLPEPNPFIPDDVSLIKSEKKFT---- 500 (937)
T ss_pred CccceEEEEecCC---CCccccceeecCcceecchhhhhhhhhhcccc-cccccCCCCCCCCCccccccccccCCC----
Confidence 8999999999996 45689999999999999999999999999876 788999999999999999976555444
Q ss_pred CCCeEEecCCCcEEEEecCCccCC-ceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC------cccccC
Q 006184 567 TSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS------RLSFIK 639 (657)
Q Consensus 567 ~~P~~~~~~~~~~~w~k~d~~F~~-Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~------~~~~~~ 639 (657)
.|.++.+.++.++||++|++|.+ ||+++.+.|++|.+..||++.|++.|++.+++++|.+..|+|. +++.+.
T Consensus 501 -~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~ 579 (937)
T COG1025 501 -FPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANS 579 (937)
T ss_pred -CchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCC
Confidence 79999999999999999999998 9999999999999999999999999999999999999999999 888888
Q ss_pred CCeEEeh
Q 006184 640 NEILLLP 646 (657)
Q Consensus 640 ~gi~~~~ 646 (657)
+|+.|+.
T Consensus 580 ~Gl~lti 586 (937)
T COG1025 580 NGLDLTI 586 (937)
T ss_pred CceEEEe
Confidence 9999875
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.3e-86 Score=794.62 Aligned_cols=569 Identities=29% Similarity=0.479 Sum_probs=513.5
Q ss_pred CCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhccc
Q 006184 11 DEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGK 90 (657)
Q Consensus 11 ~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (657)
...++||++|++.|+.++|+|||+|++++++.. +
T Consensus 31 ~~~~~k~~~d~~~~~~~~L~NGL~v~l~~~~~~------~---------------------------------------- 64 (961)
T PRK15101 31 QETIRKSEKDPRQYQAIRLDNGMTVLLVSDPQA------V---------------------------------------- 64 (961)
T ss_pred cccCcCCCCCccceEEEEeCCCCEEEEEeCCCC------c----------------------------------------
Confidence 346999999999999999999999999999988 7
Q ss_pred ccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhh
Q 006184 91 GIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREF 170 (657)
Q Consensus 91 ~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~ 170 (657)
.+++++.|++||++||.+.+|+|||||||+|+||++||.+++|.++++++||+.||+|+.++|+|++++++++
T Consensus 65 -------~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~ 137 (961)
T PRK15101 65 -------KSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDA 137 (961)
T ss_pred -------ceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHH
Confidence 9999999999999999999999999999999999999976899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHH
Q 006184 171 LKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQ 250 (657)
Q Consensus 171 l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~ 250 (657)
|+.+|++|+++|.+|.|+++++++||++|.+|++++.++|.+++.+.+..++|++|||+++.+|+.++|... ...+++
T Consensus 138 l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~--~~~~~~ 215 (961)
T PRK15101 138 LPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDK--PGSKLQ 215 (961)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcC--CchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999861 001389
Q ss_pred HHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccc-cccccceEEEEeecCcccEEEEEEE
Q 006184 251 EQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEG-TIWKACKLFRLEAVKDVHILDLTWT 329 (657)
Q Consensus 251 ~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~f~ 329 (657)
++|++||++||+|+||+|||+|++++++++++++++|+.||++..+.+....+. .+...+.++...+..++.++.+.|+
T Consensus 216 ~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 295 (961)
T PRK15101 216 DALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIHYVPAQPRKVLRVEFR 295 (961)
T ss_pred HHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEEEEECCCCcEEEEEEe
Confidence 999999999999999999999999999999999999999998764333221110 1111344555667788899999999
Q ss_pred cCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHH
Q 006184 330 LPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFV 409 (657)
Q Consensus 330 ~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v 409 (657)
+|.....+...+..+++++||+++.|+|++.|+++||+|+++++...... .+.|.|.|++.++++|.++++++++.+
T Consensus 296 ~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~~---~~~g~f~i~~~~~~~~~~~~~~v~~~i 372 (961)
T PRK15101 296 IDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMVD---RNSGVFAISVSLTDKGLAQRDQVVAAI 372 (961)
T ss_pred cCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeeccccccC---CCceEEEEEEEcChHHHHhHHHHHHHH
Confidence 99876666667899999999999999999999999999999987653211 135699999999998888999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhcCcC
Q 006184 410 YQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPE 489 (657)
Q Consensus 410 ~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l~~~ 489 (657)
+++|++|++.|+++++++++|+.+..+|.+.+...+.+++..++.++..+++++++.+..+++++++++|++++++|+|+
T Consensus 373 ~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~ 452 (961)
T PRK15101 373 FSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYIADRYDPKAIKARLAEMTPQ 452 (961)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeCchhhhcCCHHHHHHHHhhcCHh
Confidence 99999999999999999999999999998888778888999999999989999999999999999999999999999999
Q ss_pred ceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccccccCCCCcCCCCC
Q 006184 490 NMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSP 569 (657)
Q Consensus 490 n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~~~~~~~~~~P 569 (657)
|+++++++|.+ .++++++||+|+|++++|+.++++.|.+... .+.|+||++|||||+||+++..+.... .|
T Consensus 453 n~~i~~~~~~~---~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~-~~~l~lP~~n~fip~~~~~~~~~~~~~-----~p 523 (961)
T PRK15101 453 NARIWYISPQE---PHNKTAYFVDAPYQVDKISEQTFADWQQKAQ-NIALSLPELNPYIPDDFSLIKADKAYK-----HP 523 (961)
T ss_pred HEEEEEEeCCC---CCCccccccCCcceeecCCHHHHHHHhcCCC-CccCCCCCCCCccCCCCeeccCCCCCC-----CC
Confidence 99999999975 5678999999999999999999999988655 778999999999999999987654333 79
Q ss_pred eEEecCCCcEEEEecCCcc-CCceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC------cccccCCCe
Q 006184 570 TCIIDEPLIRFWYKLDNTF-KLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS------RLSFIKNEI 642 (657)
Q Consensus 570 ~~~~~~~~~~~w~k~d~~F-~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~------~~~~~~~gi 642 (657)
++|.+++++++||++|+.| .+||+.|.+.|++|.+..++++.+++.||+.++++.++|..|.|. +++ +.+|+
T Consensus 524 ~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~ 602 (961)
T PRK15101 524 ELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGL 602 (961)
T ss_pred eEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCE
Confidence 9999999999999999999 599999999999999999999999999999999999999999998 666 68888
Q ss_pred EEehh
Q 006184 643 LLLPK 647 (657)
Q Consensus 643 ~~~~~ 647 (657)
.+.+.
T Consensus 603 ~i~v~ 607 (961)
T PRK15101 603 MVNAN 607 (961)
T ss_pred EEEEE
Confidence 88773
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.1e-52 Score=468.56 Aligned_cols=343 Identities=25% Similarity=0.341 Sum_probs=295.3
Q ss_pred eeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEEEE
Q 006184 25 RVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMC 104 (657)
Q Consensus 25 ~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (657)
|.++|+|||+|++++++.. + .+++++.
T Consensus 1 r~~tL~NGLrVllv~~p~~------p-----------------------------------------------~vav~l~ 27 (696)
T TIGR02110 1 RRITLPNGLRVHLYHQPDA------K-----------------------------------------------RAAALLR 27 (696)
T ss_pred CeEEcCCCCEEEEEECCCC------C-----------------------------------------------EEEEEEE
Confidence 4579999999999999988 7 9999999
Q ss_pred ecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhhhC
Q 006184 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFIS 184 (657)
Q Consensus 105 v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~~~ 184 (657)
|++||.+||.+.+|+|||+|||+|+||++|+..++|.++++.+||++||+|+.++|+|++++++++++.+|++|++++.+
T Consensus 28 v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~ 107 (696)
T TIGR02110 28 VAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLAR 107 (696)
T ss_pred EeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998558999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhccCC
Q 006184 185 PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGG 264 (657)
Q Consensus 185 P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~~ 264 (657)
|.|+++++++||+++.+|++.+.++|..++.+.+...+|++|||+++.+|+.++|.... .+++++|++||++||+|+
T Consensus 108 P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it---~~t~edL~~F~~~~Y~p~ 184 (696)
T TIGR02110 108 PLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPN---TAFQQALRDFHRRHYQAG 184 (696)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcc---cchHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999998610 045999999999999999
Q ss_pred ccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhhccHHHH
Q 006184 265 LMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDY 344 (657)
Q Consensus 265 ~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~ 344 (657)
||+|+|+|++++++++++++++|+.|+++..+.+.. +.+....+...... ....++.+.|.+|..... +..++.+
T Consensus 185 NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~--~~p~~~~~~~~~~~--~~~~q~~l~~~~p~~~~~-d~~al~l 259 (696)
T TIGR02110 185 NMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAP--PAPLLRFDRLTLAG--GSEPRLWLLFALAGLPAT-ARDNVTL 259 (696)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCC--CCCCCCCceeEEEe--cCcceEEEEEeecCCCCC-ChHHHHH
Confidence 999999999999999999999999998765432221 11222222222222 234567777777764321 2346899
Q ss_pred HHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhc--CCc
Q 006184 345 LAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQV--SPQ 422 (657)
Q Consensus 345 l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~--~i~ 422 (657)
++++||++++|+|+..||++||+|+++++...... ..+.|.|++.+++.+.++.+++++.|+++|+.|+++ +++
T Consensus 260 L~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~----g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~ 335 (696)
T TIGR02110 260 LCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDA----GQALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQ 335 (696)
T ss_pred HHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCC----CCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999986532221 234999999997766679999999999999999998 888
Q ss_pred hHHHHHHHHH
Q 006184 423 KWIFKELQDI 432 (657)
Q Consensus 423 e~el~~~k~~ 432 (657)
.+|++++|+.
T Consensus 336 ~eel~rlk~~ 345 (696)
T TIGR02110 336 LEHYAQLAQR 345 (696)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=4.2e-51 Score=447.17 Aligned_cols=410 Identities=21% Similarity=0.206 Sum_probs=346.1
Q ss_pred CCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccc
Q 006184 18 PNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTK 97 (657)
Q Consensus 18 ~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (657)
+.+.. ++..+|+||+++++.+++.. +
T Consensus 12 ~~~~~-~~~~~L~nGl~~~~~~~~~~------~----------------------------------------------- 37 (438)
T COG0612 12 PALPG-LQVFTLPNGLRVITYPNPTA------P----------------------------------------------- 37 (438)
T ss_pred ccccc-ceEEEcCCCCEEEEEeCCCC------C-----------------------------------------------
Confidence 33444 89999999999999999987 7
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
.+++.++|++|+..++....|+|||||||+|.|+++++. .++.+.++..||..||+|+.++|+|++++.+++++.+|++
T Consensus 38 ~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~-~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~l 116 (438)
T COG0612 38 TVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPS-AELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDL 116 (438)
T ss_pred EEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCCh-HHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHHH
Confidence 999999999999999999999999999999999999998 5999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHH
Q 006184 178 FSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLY 257 (657)
Q Consensus 178 la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~ 257 (657)
+++++.+|.|++++|++||..+.+|+++..++|.++++..+...+|++|||+++..|+.++|.+ +++++|++||
T Consensus 117 lad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~------it~~dl~~f~ 190 (438)
T COG0612 117 LADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEA------ITREDLKDFY 190 (438)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHh------CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEe----ecCcccEEEEEEEcCCC
Q 006184 258 MNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLE----AVKDVHILDLTWTLPCL 333 (657)
Q Consensus 258 ~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~f~~p~~ 333 (657)
++||+|+||+|+|+||++.+++.++++++|++|+....+.+.. ..++......+.+. +.-.+..+.++++.+..
T Consensus 191 ~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 268 (438)
T COG0612 191 QKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIP--PEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDY 268 (438)
T ss_pred HHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCC--CccccCCCceEEecCCCCchhhhhhhhccccCcCc
Confidence 9999999999999999999999999999999999722222222 12333344444432 33345566777777665
Q ss_pred chhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHH
Q 006184 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 412 (657)
Q Consensus 334 ~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~ 412 (657)
....+..++.+++.+||++..++|+..+| ++||+|+++++.... .+.|.+.+++.+.+ .+.+.+.+.|.+.
T Consensus 269 ~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~i~~~ 340 (438)
T COG0612 269 DSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFL-----SDSGLFSIYAGTAP---ENPEKTAELVEEI 340 (438)
T ss_pred CcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccc-----cccCCceEEEEecC---CChhhHHHHHHHH
Confidence 43334578899999999999999999999 899999998754432 23458888888887 6777777777777
Q ss_pred HHHHHhcC---CchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCC-CCCccccccccccccCCHHHHHHHHhh-cC
Q 006184 413 IKLLRQVS---PQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FM 487 (657)
Q Consensus 413 l~~L~~~~---i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~-~~~~~~l~~~~~i~~vt~edI~~~~~~-l~ 487 (657)
+..+++.. +++++++.+|+.+...+.+.. +++...+..+...... .+..........++++|+++|++++++ +.
T Consensus 341 ~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~ 419 (438)
T COG0612 341 LKALKKGLKGPFTEEELDAAKQLLIGLLLLSL-DSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLA 419 (438)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 77776664 899999999999888876654 4567767666665444 334445555677999999999999987 78
Q ss_pred cCceEEEEEeCC
Q 006184 488 PENMRIDVVSKS 499 (657)
Q Consensus 488 ~~n~~i~iv~~~ 499 (657)
+++..+++++|.
T Consensus 420 ~~~~~~~~~~p~ 431 (438)
T COG0612 420 PENLTIVVLGPE 431 (438)
T ss_pred CCCcEEEEEccc
Confidence 888999999986
No 6
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-48 Score=384.43 Aligned_cols=408 Identities=15% Similarity=0.121 Sum_probs=348.5
Q ss_pred cccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEE
Q 006184 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (657)
Q Consensus 21 ~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (657)
.++.+..+|+||++|..-++ ++ . .+.
T Consensus 31 ~P~t~vttL~NGlrVaTE~~-~a------~-----------------------------------------------TAT 56 (467)
T KOG0960|consen 31 VPETEVTTLPNGLRVATEHN-SA------S-----------------------------------------------TAT 56 (467)
T ss_pred CCcceEEEcCCCcEEEeccC-CC------c-----------------------------------------------ceE
Confidence 46778999999999999888 55 5 999
Q ss_pred EEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHH
Q 006184 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQ 180 (657)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~ 180 (657)
+.++|.+||+.|.+...|.|||||||.|.||++.+. ..++..++..|+.+||+|++|+|+||..+.+++++.++++|++
T Consensus 57 VGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~-~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaD 135 (467)
T KOG0960|consen 57 VGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQ-AALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILAD 135 (467)
T ss_pred EEEEeccCccccccccccHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHH
Confidence 999999999999999999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred hhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhh
Q 006184 181 FFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (657)
Q Consensus 181 ~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~ 260 (657)
++.+..+.+..|++||..|..|++....+-..++++.++..+|+++|+++...|..+.|++ ++++||++|.++|
T Consensus 136 Ilqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~s------i~r~DL~~yi~th 209 (467)
T KOG0960|consen 136 ILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKS------ISRADLKDYINTH 209 (467)
T ss_pred HHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhhh------hhHHHHHHHHHhc
Confidence 9999999999999999999999999888888889999999999999999999999999999 9999999999999
Q ss_pred ccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhhcc
Q 006184 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKK 340 (657)
Q Consensus 261 y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~ 340 (657)
|.+.||+|+.+|.+++++|.+++++|||+++....+......+.+.|.+..+....+.-+..++.|++.+.+... +++.
T Consensus 210 Y~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~-pD~~ 288 (467)
T KOG0960|consen 210 YKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAH-PDYF 288 (467)
T ss_pred ccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCCchhheeeeEecCCcCC-ccHH
Confidence 999999999999999999999999999998753322211111224455666666666677888888888887543 3668
Q ss_pred HHHHHHHHhcCC---------CCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHH
Q 006184 341 SEDYLAHLLGHE---------GRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQ 411 (657)
Q Consensus 341 ~~~~l~~lLg~~---------~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~ 411 (657)
++.+.+.++|+. .+++|.+.+-...++.++.++... | .++|+|++++.+.. ...++.++..+.+
T Consensus 289 ~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~----Y-kDTGLwG~y~V~~~--~~~iddl~~~vl~ 361 (467)
T KOG0960|consen 289 ALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTS----Y-KDTGLWGIYFVTDN--LTMIDDLIHSVLK 361 (467)
T ss_pred HHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcc----c-ccccceeEEEEecC--hhhHHHHHHHHHH
Confidence 999999999963 135577777766788877664432 2 37789999999942 2789999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCcccc-ccccccccCCHHHHHHHHhh-cCcC
Q 006184 412 YIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVI-YGEYMYEVWDEEMIKHLLGF-FMPE 489 (657)
Q Consensus 412 ~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l-~~~~~i~~vt~edI~~~~~~-l~~~ 489 (657)
+..+|+. .+++.|.+++|++++.+...... ...-.+..++.+++.|+..--+ +-..+|++||.++|++++.+ +-..
T Consensus 362 eW~rL~~-~vteaEV~RAKn~Lkt~Lll~ld-gttpi~ediGrqlL~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~ 439 (467)
T KOG0960|consen 362 EWMRLAT-SVTEAEVERAKNQLKTNLLLSLD-GTTPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDK 439 (467)
T ss_pred HHHHHHh-hccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhhcCCcCChHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 9999976 79999999999999999765443 3455699999999888754333 33467999999999999986 7788
Q ss_pred ceEEEEEeCC
Q 006184 490 NMRIDVVSKS 499 (657)
Q Consensus 490 n~~i~iv~~~ 499 (657)
...++.+||-
T Consensus 440 ~iAia~vG~i 449 (467)
T KOG0960|consen 440 DIAIAAVGPI 449 (467)
T ss_pred Ccceeeeccc
Confidence 8888999974
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=5.2e-42 Score=406.41 Aligned_cols=522 Identities=14% Similarity=0.063 Sum_probs=345.5
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcC--CccceeeCCCceEEEEEeChh-hHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHG--GSSNAYTETEHTCYHFEIKRE-FLKGA 174 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~g--g~~na~t~~e~t~~~~~~~~~-~l~~a 174 (657)
..+++++|++|+ .+..|+||+||||+|+||++||.. ++...+.+.| +.+||+|+.|+|+|++.+.++ ++..+
T Consensus 115 ~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~-~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 115 EMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYK-DSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred eeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcc-cHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 678889999997 345899999999999999999994 6777777655 889999999999999999875 79999
Q ss_pred HHHHHHhhhCCCCChHHH--H---------HH--------------------HHHHHHHHHhccCCHHHHHHHHHHhhCC
Q 006184 175 LMRFSQFFISPLMKVEAM--E---------RE--------------------VLAVDSEFNQALQNDACRLQQLQCHTSQ 223 (657)
Q Consensus 175 L~~la~~~~~P~f~~~~~--e---------~e--------------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~ 223 (657)
|+++++++.+|.|+++.+ . ++ +..|.+|++...++|.+++++.+.+.+|
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~lf 269 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNLF 269 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 999999999999998863 2 21 6779999999999999999999999999
Q ss_pred CCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCC----C-
Q 006184 224 LGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK----P- 298 (657)
Q Consensus 224 ~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~----~- 298 (657)
+|||+++..|++++|.. +++++|++||++||+|+||+|+|+|+++++++.++++++|+.+|+..... +
T Consensus 270 -~~pY~~~~~G~~~~I~~------lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~ 342 (1119)
T PTZ00432 270 -SNVYKYDSGGDPKDIVE------LTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYRE 342 (1119)
T ss_pred -CCCCCCCCCCChHhhcc------CCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999998 99999999999999999999999999999999999999999998653211 0
Q ss_pred --CCccc-ccccccceEEEE---eecCcccEEEEE-EEcCCC-----------chhhhccHHHHHHHHhcCCCCChHHHH
Q 006184 299 --QFTVE-GTIWKACKLFRL---EAVKDVHILDLT-WTLPCL-----------HQEYLKKSEDYLAHLLGHEGRGSLHSF 360 (657)
Q Consensus 299 --~~~~~-~~~~~~~~~~~~---~~~~~~~~l~i~-f~~p~~-----------~~~~~~~~~~~l~~lLg~~~~~sL~~~ 360 (657)
....+ .+.+.....+.+ .+...+..+.++ |++++. .+..+..++.+|+++||+++.++|++.
T Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~ 422 (1119)
T PTZ00432 343 DADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKA 422 (1119)
T ss_pred cccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 00000 011222222222 112234556665 988432 222467899999999999999999999
Q ss_pred HHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCc-cc----cccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 361 LKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD-SG----LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 361 LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~-~G----~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
||++||+|++.++...... ..|.|.|.+...+ .. .++++++.+.|+++|+.++++|+++++++++++.+..
T Consensus 423 LrE~GLa~svv~~~~~~~~----~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef 498 (1119)
T PTZ00432 423 LIDSGLGKKVVGSGLDDYF----KQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEF 498 (1119)
T ss_pred HHhcCCCcCCCcCcccCCC----CceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999996432222122 3458988886332 11 1358899999999999999999999999999888777
Q ss_pred hhhhccCC---ChhHHHHHHHHhcCC-CCCcccccccccccc------CCHHHHHHHHhh-cCcCce-EEEEEeCCC--C
Q 006184 436 EFRFAEEQ---PQDDYAAELAGNLLI-YPAEHVIYGEYMYEV------WDEEMIKHLLGF-FMPENM-RIDVVSKSF--A 501 (657)
Q Consensus 436 ~f~~~~~~---~~~~~~~~la~~l~~-~~~~~~l~~~~~i~~------vt~edI~~~~~~-l~~~n~-~i~iv~~~~--~ 501 (657)
+++-.... ....++..++..+++ .+|.+.+.....++. .++..++.++++ |...+- .++++.|.- .
T Consensus 499 ~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N~h~~~v~~~p~~s~~ 578 (1119)
T PTZ00432 499 VMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNNNHRVTVHLEAVESSK 578 (1119)
T ss_pred HhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCCCeeeEEEEecCCccc
Confidence 65532111 135677777777654 456665544333322 244678899986 443333 344444432 0
Q ss_pred -CCCCcccc----ceecceeeeecCCh-----HHHHhhcCCCCCCCc-C---------CCCCCCCCCCCCccccccccCC
Q 006184 502 -KSQDFHYE----PWFGSRYTEEDISP-----SLMELWRNPPEIDVS-L---------QLPSQNEFIPTDFSIRANDISN 561 (657)
Q Consensus 502 -~~~~~~~e----~~y~~~Y~~~~i~~-----~~~~~~~~~~~~~~~-l---------~lP~~N~fip~d~~l~~~~~~~ 561 (657)
..+....+ .=+....+-+++.. +.++.|++... +++ + .||+..+++|....-... ...
T Consensus 579 ~~~~~~~~e~~~L~~~~~~Ls~ee~~~i~~~~~~l~~~q~~~~-~~e~l~~lP~l~~~DI~~~~~~~~~~~~~~~~-~~~ 656 (1119)
T PTZ00432 579 YEKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKKEREADD-DPEHLDSFPILSLSDLNKETEEIPTKLYKLSS-DSL 656 (1119)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHhhcCCCcHHHcCCcccCCcchhhhccc-ccc
Confidence 00001111 01111111111111 22334555332 211 1 234444455544210000 000
Q ss_pred CCcCCCCCeEEecCCCcEEEEecCCccCCceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhh--ccccC--cccc
Q 006184 562 DLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI--IYQVS--RLSF 637 (657)
Q Consensus 562 ~~~~~~~P~~~~~~~~~~~w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~--~Y~a~--~~~~ 637 (657)
. ....+-.+.++..+++.. .+..-.+++.+.|.++. -+....-+..||+.+|.. +... .|... .+..
T Consensus 657 ~----~~~~~~~~~~~~~~~~~~--~~TnGi~y~~~~fdl~~--l~~e~~~yl~L~~~~l~~-~gT~~~s~~el~~~i~~ 727 (1119)
T PTZ00432 657 K----ENMDLDSDGGSVTVLVHP--IESRGILYLDFAFSLDS--LTVDELKYLNLFKALLKE-NGTDKLSSEEFTYKREK 727 (1119)
T ss_pred c----ccccccccCCCcceEEEe--cCCCCeEEEEEEecCCC--CCHHHHhhHHHHHHHHHh-cCCCCCCHHHHHHHHHH
Confidence 0 001111223455666552 33344566666666654 355777788899999865 4433 33333 6666
Q ss_pred cCCCeEEeh
Q 006184 638 IKNEILLLP 646 (657)
Q Consensus 638 ~~~gi~~~~ 646 (657)
...||...+
T Consensus 728 ~tGg~~~~~ 736 (1119)
T PTZ00432 728 NLGGLSAST 736 (1119)
T ss_pred hCCCeEEEE
Confidence 666666553
No 8
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-42 Score=340.99 Aligned_cols=400 Identities=14% Similarity=0.116 Sum_probs=342.3
Q ss_pred ccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEE
Q 006184 22 RLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAA 101 (657)
Q Consensus 22 ~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (657)
.+.|..+|+|||+|..-..|+. -+.+
T Consensus 23 ~~~kvttL~NGlkvase~~pg~------------------------------------------------------f~~v 48 (472)
T KOG2067|consen 23 SNTKVTTLPNGLKVASENTPGQ------------------------------------------------------FCTV 48 (472)
T ss_pred ccceeeecCCccEEeccCCCCC------------------------------------------------------ceEE
Confidence 4789999999999998888855 8999
Q ss_pred EEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHh
Q 006184 102 AMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQF 181 (657)
Q Consensus 102 ~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~ 181 (657)
.+.|..||++|.+...|++||+|.|.|..|.+++.. ++...|+++||.+.+.+++|.+.|..++.++.++.++++|++.
T Consensus 49 GlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~-ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadt 127 (472)
T KOG2067|consen 49 GLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSK-EILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADT 127 (472)
T ss_pred EEEEecCccccCcCcccHHHHHHHHhhccccCCcHH-HHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhc
Q 006184 182 FISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYY 261 (657)
Q Consensus 182 ~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y 261 (657)
..+|.|++++++.++.++.-|+......|+-.+.+.++.++|.+.+.+.+..+..+.+.. |+++.|..|.+.+|
T Consensus 128 V~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~------I~~~~l~~yl~~~y 201 (472)
T KOG2067|consen 128 VLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDK------INREVLEEYLKYFY 201 (472)
T ss_pred HhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhhhh------hhHHHHHHHHHhcC
Confidence 999999999999999999999998888999999999999999999999999998899988 99999999999999
Q ss_pred cCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEE------EEeecCcccEEEEEEEcCCCch
Q 006184 262 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLF------RLEAVKDVHILDLTWTLPCLHQ 335 (657)
Q Consensus 262 ~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~f~~p~~~~ 335 (657)
+|.+|+++.+| ++++++.+.+++||+++|+...+.... +...+++|... .+......+++.++|..++..+
T Consensus 202 tp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~--~~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~d 278 (472)
T KOG2067|consen 202 TPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDE--SKAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWND 278 (472)
T ss_pred ChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCccc--chhhccccccccCCCCccccCccceeeeeEeeccCCCCC
Confidence 99999999999 999999999999999999865433322 21223333211 1112236678999999998765
Q ss_pred hhhccHHHHHHHHhcCCCC-----------ChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHH
Q 006184 336 EYLKKSEDYLAHLLGHEGR-----------GSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIF 403 (657)
Q Consensus 336 ~~~~~~~~~l~~lLg~~~~-----------~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~ 403 (657)
. +..++.+|+.++||+|+ +||+-.+- +..|+|+..++... | +|+|+|.|++.+.| +++.
T Consensus 279 e-D~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhs----y-~DtGlfgi~~s~~P---~~a~ 349 (472)
T KOG2067|consen 279 E-DFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHS----Y-SDTGLFGIYASAPP---QAAN 349 (472)
T ss_pred h-hHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhcc----c-cCCceeEEeccCCH---HHHH
Confidence 4 77999999999999765 45776555 89999999887654 2 47889999999999 8999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCC----CccccccccccccCCHHHH
Q 006184 404 DIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP----AEHVIYGEYMYEVWDEEMI 479 (657)
Q Consensus 404 ~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~----~~~~l~~~~~i~~vt~edI 479 (657)
+++..+-+++..+. .+++++|+++||++++....+..++.+ -..+.++++.+.++ |++.+. .|+++|++||
T Consensus 350 ~aveli~~e~~~~~-~~v~~~el~RAK~qlkS~LlMNLESR~-V~~EDvGRQVL~~g~rk~p~e~~~---~Ie~lt~~DI 424 (472)
T KOG2067|consen 350 DAVELIAKEMINMA-GGVTQEELERAKTQLKSMLLMNLESRP-VAFEDVGRQVLTTGERKPPDEFIK---KIEQLTPSDI 424 (472)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcccccc-hhHHHHhHHHHhccCcCCHHHHHH---HHHhcCHHHH
Confidence 99999999999885 469999999999999999887666544 34567777765443 344443 5999999999
Q ss_pred HHHHhhcCcCceEEEEEeCC
Q 006184 480 KHLLGFFMPENMRIDVVSKS 499 (657)
Q Consensus 480 ~~~~~~l~~~n~~i~iv~~~ 499 (657)
+++++++...+..+.-.|+.
T Consensus 425 ~rva~kvlt~~p~va~~Gd~ 444 (472)
T KOG2067|consen 425 SRVASKVLTGKPSVAAFGDG 444 (472)
T ss_pred HHHHHHHhcCCceeccCCcc
Confidence 99999977778777766654
No 9
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=264.82 Aligned_cols=517 Identities=16% Similarity=0.120 Sum_probs=340.6
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCc-cceeeCCCceEEEEEe-ChhhHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGS-SNAYTETEHTCYHFEI-KREFLKGAL 175 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~-~na~t~~e~t~~~~~~-~~~~l~~aL 175 (657)
....+++|+ -.|.+-.|+||.||||+||||+|||-.+-|...+.+-=++ +||+|..|+|+|-+.. ..+++-..|
T Consensus 42 ~~vFsi~F~----T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~NLl 117 (978)
T COG1026 42 NNVFSIAFK----TEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYNLL 117 (978)
T ss_pred CceEEEEee----cCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHHHH
Confidence 455556554 4577788999999999999999999988888887765444 8999999999999965 567999999
Q ss_pred HHHHHhhhCCCCChHHHHHHH--------------HHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhh
Q 006184 176 MRFSQFFISPLMKVEAMEREV--------------LAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG 241 (657)
Q Consensus 176 ~~la~~~~~P~f~~~~~e~e~--------------~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~ 241 (657)
.+.++...+|.+.++.|.+|- .+|-+|++....++..++++.+++.+||+..|+..+.|.+..|..
T Consensus 118 ~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I~~ 197 (978)
T COG1026 118 SVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPD 197 (978)
T ss_pred HHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccccc
Confidence 999999999999999998884 456788999999999999999999999999999999999999998
Q ss_pred hhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHH-hccccCCCCCCCCCcccccccc--cceEEE--E-
Q 006184 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVEL-FANVRKGPQIKPQFTVEGTIWK--ACKLFR--L- 315 (657)
Q Consensus 242 ~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~-f~~ip~~~~~~~~~~~~~~~~~--~~~~~~--~- 315 (657)
++.+++++||++||+|+|+++.++||++.+++.+.++.. |...+......+.. ....+. ...... +
T Consensus 198 ------LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~--~~~~~~~~~~~~~~ypi~ 269 (978)
T COG1026 198 ------LTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIP--DQKAFKKPRRKVLEYPIS 269 (978)
T ss_pred ------cCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCC--cccccCcccccceeeccC
Confidence 999999999999999999999999999999999999876 55554433211111 111121 111111 1
Q ss_pred --eecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCc-ceeeeeeCCCCCCccccccEEEEEE
Q 006184 316 --EAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWA-TSISAGVGDEGMHRSSIAYIFVMSI 392 (657)
Q Consensus 316 --~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~-ysv~a~~~~~~~~~~~~~g~f~i~~ 392 (657)
.....+..+.+.|..+...+.++..++.+|..+|-+...+-|.+.|-+.|+. ..++..+...- -. ..|.|.+
T Consensus 270 ~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~~~g~~~~~~-~~----~~f~v~~ 344 (978)
T COG1026 270 FDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFADVSGSYDSDL-KE----TIFSVGL 344 (978)
T ss_pred CCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCcccccceecccc-ce----eEEEEEe
Confidence 2234577888899999988778889999999999987777799998877776 33332222211 11 1455544
Q ss_pred EeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHH--HHHHHh-cCCCCCccccccc-
Q 006184 393 HLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYA--AELAGN-LLIYPAEHVIYGE- 468 (657)
Q Consensus 393 ~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~--~~la~~-l~~~~~~~~l~~~- 468 (657)
.--+ .++++++-+.|++.++.+.++|++++.++.++.+......-. ...+...+ ..+... +....|.+.+...
T Consensus 345 ~gv~--~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~-~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~ 421 (978)
T COG1026 345 KGVS--EEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV-KSYPFGLGLMFRSLYGWLNGGDPEDSLRFLD 421 (978)
T ss_pred cCCC--HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh-cCCCccHHHHHHhccccccCCChhhhhhhHH
Confidence 4333 368999999999999999999999999999988776654432 33344332 222222 2233455554432
Q ss_pred --cccccCCHHH--HHHHHhh-cCcCc-eEEEEEeCCCC-CCCCccccceecceeeeecCChHHHHhhcCCC----CCCC
Q 006184 469 --YMYEVWDEEM--IKHLLGF-FMPEN-MRIDVVSKSFA-KSQDFHYEPWFGSRYTEEDISPSLMELWRNPP----EIDV 537 (657)
Q Consensus 469 --~~i~~vt~ed--I~~~~~~-l~~~n-~~i~iv~~~~~-~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~----~~~~ 537 (657)
..+++.-... .++++++ |...+ ..++++-|... ..+..+.+.= ...=....++++-+++..... +.+
T Consensus 422 ~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e-~L~~~~~~l~de~~~ki~~~~~~lke~Q- 499 (978)
T COG1026 422 YLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERE-LLQKRSSELTDEDLEKIIKDSKKLKERQ- 499 (978)
T ss_pred HHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHH-HHHHHHhhcCHHHHHHHHHHHHHHHHhh-
Confidence 2344333333 8889986 44444 67777777641 0111111100 000112333433333322210 000
Q ss_pred cCCCCC-CCCCCCCCccccccccCCCCcCCCCCeEEecCCCcE-EEEecCCccCCceeeEEEEEecCCCcCCHHHHHHHH
Q 006184 538 SLQLPS-QNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIR-FWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTE 615 (657)
Q Consensus 538 ~l~lP~-~N~fip~d~~l~~~~~~~~~~~~~~P~~~~~~~~~~-~w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~ 615 (657)
.=..|+ -+..+|+ +++.......+ ..+.-.......+ +||.. |..-..++.+.|.++... ..-.-+..
T Consensus 500 ~~~dse~~~~~lP~-l~~~dvp~~~~----k~~l~~~~~~~~~v~~~~~---~tn~i~yl~~~~~~~~l~--~~llpyL~ 569 (978)
T COG1026 500 DQPDSEEDLATLPT-LKLGDVPDPIE----KTSLETEVSNEAKVLHHDL---FTNGITYLRLYFDLDMLP--SELLPYLP 569 (978)
T ss_pred cCCCchhhhhhccc-cchhcCCCccc----ccceeeeccCCcceEEeec---CCCCeEEEEEEeecCCCC--hhhhhhHH
Confidence 001111 1122332 33332222211 1333334444444 46664 555678888888886553 34566778
Q ss_pred HHHHHHHHHhhh-hccccC--cccccCCCeEEeh
Q 006184 616 LFIHLLKDELNE-IIYQVS--RLSFIKNEILLLP 646 (657)
Q Consensus 616 l~~~~~~~~l~e-~~Y~a~--~~~~~~~gi~~~~ 646 (657)
||+.++...-.+ +.|-.. .+..+..||.++.
T Consensus 570 L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~ 603 (978)
T COG1026 570 LFAFALTNLGTETYSYKELLNQIERHTGGISVSL 603 (978)
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeE
Confidence 888888875555 344333 6666677776654
No 10
>PRK15101 protease3; Provisional
Probab=99.96 E-value=4.2e-27 Score=282.11 Aligned_cols=392 Identities=10% Similarity=0.001 Sum_probs=290.6
Q ss_pred ccceeEEecCCCEEEEEeCC---CCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccce
Q 006184 22 RLYRVIELENRLCALLVHDP---EIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKK 98 (657)
Q Consensus 22 ~~y~~~~L~NGl~v~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (657)
.....+.++||++|++++|+ .. | +
T Consensus 521 ~~p~~i~~~~g~~vw~~~d~~f~~~------P-----------------------------------------------k 547 (961)
T PRK15101 521 KHPELIVDEPGLRVVYMPSQYFADE------P-----------------------------------------------K 547 (961)
T ss_pred CCCeEEEcCCCeEEEEeCCCccccC------C-----------------------------------------------C
Confidence 34578999999999999998 56 6 9
Q ss_pred EEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHH
Q 006184 99 AAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRF 178 (657)
Q Consensus 99 ~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~l 178 (657)
+.+.+.+..|...++....|++.++..|+.. . -+++.......|.+.+.. +.+.+.+++++.+++++.+|+++
T Consensus 548 ~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~-----~-l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l 620 (961)
T PRK15101 548 ADISLVLRNPKAMDSARNQVLFALNDYLAGL-----A-LDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQAL 620 (961)
T ss_pred EEEEEEEeCCCccCCHHHHHHHHHHHHHHHH-----H-HHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHH
Confidence 9999999999999988899999999999722 1 245555566678888888 68999999999999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh-hCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHH
Q 006184 179 SQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCH-TSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLY 257 (657)
Q Consensus 179 a~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~-~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~ 257 (657)
++.+.+|.|++++|+++|+.+.+++++...+ ..+.+.+.. ..+.+|||+.. .|..++|.+ +++++|++||
T Consensus 621 ~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~py~~~-~~~~~~l~~------it~edl~~f~ 691 (961)
T PRK15101 621 LEGYFSFTPTEEQLAQAKSWYREQLDSAEKG--KAYEQAIMPAQMLSQVPYFER-DERRKLLPS------ITLKDVLAYR 691 (961)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccc--CcHHHHHHHHHHHhcCCCCCH-HHHHHHHhc------CCHHHHHHHH
Confidence 9999999999999999999999999876543 222333321 34578999864 678888888 9999999999
Q ss_pred HhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceE-EEEeecCcccEEEEEEEcCCCchh
Q 006184 258 MNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKL-FRLEAVKDVHILDLTWTLPCLHQE 336 (657)
Q Consensus 258 ~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~f~~p~~~~~ 336 (657)
+++|++.+++++|+||++.+++.++++++++.++.......... .....+.... +...+...+..+.+.|..++..
T Consensus 692 ~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 768 (961)
T PRK15101 692 DALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGK-DVVVDKKQSVNFEKAGSSTDSALAAVYVPTGYD-- 768 (961)
T ss_pred HHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCccccccc-ceEeCCCCeEEEecCCCCCCCeEEEEEEeCCCC--
Confidence 99999999999999999999999999999998875332110000 0000011111 2222333445566666444432
Q ss_pred hhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHH-H
Q 006184 337 YLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYI-K 414 (657)
Q Consensus 337 ~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l-~ 414 (657)
..+..+++.|||+...++|+..|| ++||+|+|+++..... +.+.+.+.+.....+.+.+.+.+..+.+.+ +
T Consensus 769 --~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~-----~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~ 841 (961)
T PRK15101 769 --EYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVG-----RQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEA 841 (961)
T ss_pred --CHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccC-----CeeeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 256788999999988999999999 9999999999876531 122444555444433355666666666654 3
Q ss_pred HHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcC--CCCCccccccccccccCCHHHHHHHHhh--cCcCc
Q 006184 415 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL--IYPAEHVIYGEYMYEVWDEEMIKHLLGF--FMPEN 490 (657)
Q Consensus 415 ~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~--~~~~~~~l~~~~~i~~vt~edI~~~~~~--l~~~n 490 (657)
.+ .++++++|+++|+.+..++....+ +....+..+...+. .++.+........++++|+++|++++++ +.+++
T Consensus 842 ~l--~~lt~eE~~~~k~~l~~~~~~~~~-sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~ 918 (961)
T PRK15101 842 KL--RAMKPEEFAQYQQALINQLLQAPQ-TLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQG 918 (961)
T ss_pred HH--HhCCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 33 489999999999999999877655 46666666655543 3444555555567999999999999986 46777
Q ss_pred eEEEE
Q 006184 491 MRIDV 495 (657)
Q Consensus 491 ~~i~i 495 (657)
.++++
T Consensus 919 ~~~~~ 923 (961)
T PRK15101 919 LAILS 923 (961)
T ss_pred CEEEE
Confidence 55543
No 11
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.96 E-value=5.8e-26 Score=227.22 Aligned_cols=392 Identities=13% Similarity=0.099 Sum_probs=291.5
Q ss_pred cceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEE
Q 006184 23 LYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAA 102 (657)
Q Consensus 23 ~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (657)
.-..-+|.|||+|.-+..+.. .+.+.
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~------------------------------------------------------is~l~ 47 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTA------------------------------------------------------ISSLS 47 (429)
T ss_pred hhhhhccccceEEEeccCCCc------------------------------------------------------ceEEE
Confidence 345678999999999999876 99999
Q ss_pred EEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhh
Q 006184 103 MCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (657)
Q Consensus 103 l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~ 182 (657)
|.+++||+++|.+++|++|+++...|+.|+.||. ..+.+-+++.||.++.++++|+..|+.++..++++-.|.+|.+..
T Consensus 48 l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sa-l~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~ 126 (429)
T KOG2583|consen 48 LAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSA-LKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVL 126 (429)
T ss_pred EEEecCccCCccccccHHHHHHHhcccCccccch-hhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred hCCCCChHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhc
Q 006184 183 ISPLMKVEAMEREV-LAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYY 261 (657)
Q Consensus 183 ~~P~f~~~~~e~e~-~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y 261 (657)
..|.|.+++++... ..+..++. .++|..+..+.++..+|.+ .++....-..-.+.+ ++.++|.+|-+++|
T Consensus 127 ~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~------vss~eL~~Fa~k~f 197 (429)
T KOG2583|consen 127 DAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGS------VSSSELKDFAAKHF 197 (429)
T ss_pred cccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhc-ccCCcccCCcccccC------ccHHHHHHHHHHHh
Confidence 99999999999998 77777665 4789999999999999865 444433322222334 88899999999999
Q ss_pred cCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCC--Cchhhhc
Q 006184 262 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC--LHQEYLK 339 (657)
Q Consensus 262 ~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~--~~~~~~~ 339 (657)
...||+|+-+| ++++.|...+++++ .++.+....+.. ..+.++...+. ...+...+.+...+ .......
T Consensus 198 v~gn~~lvg~n-vd~~~L~~~~~~~~-~~~~~~~~k~a~----a~~~gGe~Rk~---~~g~~~~v~vagegAAa~~~k~~ 268 (429)
T KOG2583|consen 198 VKGNAVLVGVN-VDHDDLKQFADEYA-PIRDGLPLKPAP----AKYSGGEARKD---ARGNRVHVAVAGEGAAAGNLKVL 268 (429)
T ss_pred hccceEEEecC-CChHHHHHHHHHhc-cccCCCCCCCCC----ccccCCccccc---cCCceeEEEEecCcccccchHHH
Confidence 99999999998 89999999999983 333332221111 12224443332 22334555555444 2233445
Q ss_pred cHHHHHHHHhcCCCC----ChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHH
Q 006184 340 KSEDYLAHLLGHEGR----GSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKL 415 (657)
Q Consensus 340 ~~~~~l~~lLg~~~~----~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~ 415 (657)
.+..++.+.||...+ .+++..+-..-.-+.+++..... .| +|.|+|+|++..+. .++.++++.+...++.
T Consensus 269 ~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a--~y-sDsGL~gv~~~~~~---~~a~~~v~s~v~~lks 342 (429)
T KOG2583|consen 269 AAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNA--PY-SDSGLFGVYVSAQG---SQAGKVVSSEVKKLKS 342 (429)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeecc--cc-cCCceEEEEEEecC---ccHHHHHHHHHHHHHH
Confidence 677888999997664 45666555322223333322221 12 47889999999877 6888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhcCcCceEEEE
Q 006184 416 LRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDV 495 (657)
Q Consensus 416 L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l~~~n~~i~i 495 (657)
.+..+++...-..+.+.++....... .+.........++.. +++.++.. |++|++.||+++++++...+..+..
T Consensus 343 ~~~~~id~~~~~a~~~~l~~~~~ss~--~a~~~~~~~~a~~~~-~~d~~i~~---id~Vt~sdV~~a~kk~~s~kls~aA 416 (429)
T KOG2583|consen 343 ALVSDIDNAKVKAAIKALKASYLSSV--EALELATGSQANLVS-EPDAFIQQ---IDKVTASDVQKAAKKFLSGKLSLAA 416 (429)
T ss_pred HHhcCCcchHHHHHHHHHHHHhhcch--HHHHHhhHHHhcCCC-ChHHHHHH---hccccHHHHHHHHHHhccCcceeee
Confidence 88888877666666666655433221 122222222222222 55666665 9999999999999999988999998
Q ss_pred EeCC
Q 006184 496 VSKS 499 (657)
Q Consensus 496 v~~~ 499 (657)
+|+-
T Consensus 417 ~Gnl 420 (429)
T KOG2583|consen 417 YGNL 420 (429)
T ss_pred eccc
Confidence 8864
No 12
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-24 Score=228.32 Aligned_cols=516 Identities=12% Similarity=0.086 Sum_probs=343.0
Q ss_pred ecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhc-CCccceeeCCCceEEEEE-eChhhHHHHHHHHHHhh
Q 006184 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKH-GGSSNAYTETEHTCYHFE-IKREFLKGALMRFSQFF 182 (657)
Q Consensus 105 v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~-gg~~na~t~~e~t~~~~~-~~~~~l~~aL~~la~~~ 182 (657)
++++..-.|++-.|+.|.|||....||.|||-.+-|-+.|.+- .-.+||+|..++|+|-|. +.++++....++.-+..
T Consensus 77 FsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAt 156 (998)
T KOG2019|consen 77 FSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDAT 156 (998)
T ss_pred eEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcc
Confidence 3445556788889999999999999999999988888877653 345799999999999995 67789999999999999
Q ss_pred hCCCCChHHHHHH------------------HHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhh
Q 006184 183 ISPLMKVEAMERE------------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAME 244 (657)
Q Consensus 183 ~~P~f~~~~~e~e------------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~ 244 (657)
..|.+.+..|.+| +..|-+|++....++...+++.+++.++|+|.|+-.+.|.+-.|.+
T Consensus 157 ffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~Ipd--- 233 (998)
T KOG2019|consen 157 FFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPD--- 233 (998)
T ss_pred cchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCcc---
Confidence 9999998888887 5678899999999999999999999999999999999999999888
Q ss_pred cCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCccccccccc-ceEEEEe------e
Q 006184 245 KGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKA-CKLFRLE------A 317 (657)
Q Consensus 245 ~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 317 (657)
++.++|++||++||+|+|+.+.-+|++++.++..+++..|..........+.. ....+.. .+++..- +
T Consensus 234 ---Lt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~--~qk~f~kp~rvve~~p~d~~~~ 308 (998)
T KOG2019|consen 234 ---LTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVT--FQKLFDKPRRVVEKGPADPGDL 308 (998)
T ss_pred ---ccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccc--cccccccCceeeeecCCCCCCC
Confidence 99999999999999999999999999999999999988777654333221111 1122222 2222221 1
Q ss_pred cCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcce--eeeeeCCCCCCccccccEEEEEEEeC
Q 006184 318 VKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATS--ISAGVGDEGMHRSSIAYIFVMSIHLT 395 (657)
Q Consensus 318 ~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ys--v~a~~~~~~~~~~~~~g~f~i~~~l~ 395 (657)
.+.+....+.|-.+...+.|...++.+|++|+-++.++-+++.|-+.|+-.. +.+|.... +..+.|+|.+.--
T Consensus 309 p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~-----t~~~~fsVGLqGv 383 (998)
T KOG2019|consen 309 PKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDT-----TLQPQFSVGLQGV 383 (998)
T ss_pred ccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcc-----cccceeeeeeccc
Confidence 2345677888888888888889999999999999888888899988777654 44444432 1234777776544
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcC-CCCCcccccccc-----
Q 006184 396 DSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEY----- 469 (657)
Q Consensus 396 ~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~-~~~~~~~l~~~~----- 469 (657)
.+ ++++.+.+.|...++.|.+.|++.+.++.....+..+.+.+...--..++..+...+. ...|-+++.+..
T Consensus 384 se--ediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~l 461 (998)
T KOG2019|consen 384 SE--EDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKL 461 (998)
T ss_pred cH--HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHH
Confidence 33 5899999999999999999999999999988877776655433222344444444432 234545554432
Q ss_pred --ccccCCHHHHHHHHhh-c-CcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcC----CC
Q 006184 470 --MYEVWDEEMIKHLLGF-F-MPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSL----QL 541 (657)
Q Consensus 470 --~i~~vt~edI~~~~~~-l-~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l----~l 541 (657)
++..-++.-.+.++++ + ....+..+-+.|.-...+....|.--..+=.+..++++.++.+.... ..| .-
T Consensus 462 k~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~---~eL~~kQ~t 538 (998)
T KOG2019|consen 462 KQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAG---EELREKQST 538 (998)
T ss_pred HHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH---HHHHHhhCC
Confidence 2333367778889986 3 33333344444432101111111112223334555555554433321 111 11
Q ss_pred CCCCCCCCCCccccccccCCCCcCCCCCeEEecCCCcEE-EEecCCccCCceeeEEEEEecCCCcCCHHHHHHHHHHHHH
Q 006184 542 PSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRF-WYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHL 620 (657)
Q Consensus 542 P~~N~fip~d~~l~~~~~~~~~~~~~~P~~~~~~~~~~~-w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~ 620 (657)
|..=.++|+ +++......- .-.|.-+.+..++++ |+-. |..-..++++.+....+... -.-+.-|||+.
T Consensus 539 p~dlsClPt-L~vsDIp~~~----~~~~~~v~dingvkv~~~dl---~tngi~Y~r~~~~l~~~p~e--L~PylPlfc~s 608 (998)
T KOG2019|consen 539 PEDLSCLPT-LNVSDIPKTI----PYTKLEVGDINGVKVQRCDL---FTNGITYTRVVFDLNSLPEE--LLPYLPLFCQS 608 (998)
T ss_pred ccccccccc-cccccCCCCC----CccceeeeeccCceeEEeec---cCCceEEEEEeeccccCcHH--hhcchHHHHHH
Confidence 232334443 2222211111 113566777777765 4443 44556666665554433222 12345566665
Q ss_pred HHHHhhh-hccccC--cccccCCCeEEehhh
Q 006184 621 LKDELNE-IIYQVS--RLSFIKNEILLLPKF 648 (657)
Q Consensus 621 ~~~~l~e-~~Y~a~--~~~~~~~gi~~~~~~ 648 (657)
+-+.=.. +.|--. .|.....||++.|.-
T Consensus 609 ll~lGt~~lsf~el~qqI~rkTGGiS~~p~~ 639 (998)
T KOG2019|consen 609 LLNLGTGDLSFVELEQQIGRKTGGISVSPLV 639 (998)
T ss_pred HHhcCCCcccHHHHHHHhhhhcCceeeccee
Confidence 5442211 222222 788888899888753
No 13
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.92 E-value=2.4e-24 Score=200.04 Aligned_cols=137 Identities=27% Similarity=0.380 Sum_probs=132.4
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
.+++++.|++|+.+||.+.+|+||+++||+|.||++|+. .++.+.++++||.++++|+.++|.|++++++++++.+|++
T Consensus 12 ~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~-~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~ 90 (149)
T PF00675_consen 12 VVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSS-DELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALEL 90 (149)
T ss_dssp EEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBH-HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhh-hhhHHHhhhhccccceEecccceEEEEEEecccchhHHHH
Confidence 999999999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 006184 178 FSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGN 235 (657)
Q Consensus 178 la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~ 235 (657)
|++++.+|.|++++|+++|..+..|++....+|..++.+.+++.+|.+|||+++..|+
T Consensus 91 l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 91 LADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999998875
No 14
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3e-21 Score=203.36 Aligned_cols=382 Identities=17% Similarity=0.174 Sum_probs=259.4
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEe-ChhhHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEI-KREFLKGALM 176 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~-~~~~l~~aL~ 176 (657)
.+.-++.|..-..+ ..|+.|-|||++||||++||-..-++.+-...=|..||+|+.++|.|..+. ..+-|-..|.
T Consensus 41 ~vhG~f~v~TEa~~----d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~dGFlklLP 116 (1022)
T KOG0961|consen 41 MVHGAFSVVTEADS----DDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDGFLKLLP 116 (1022)
T ss_pred ceeeeEEeeeeecC----CCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEeecccccchHHHhH
Confidence 56666666554444 369999999999999999999655666655566889999999999999975 5678999999
Q ss_pred HHHHhhhCCCCChHHHHHHH----------HHHHHHHHhccCCHHHHHHHHHHhhCCC-CCCCCCCCCCChhhhhhhhhc
Q 006184 177 RFSQFFISPLMKVEAMEREV----------LAVDSEFNQALQNDACRLQQLQCHTSQL-GHAFNKFFWGNKKSLIGAMEK 245 (657)
Q Consensus 177 ~la~~~~~P~f~~~~~e~e~----------~~v~~E~~~~~~~~~~~~~~~~~~~~~~-~hp~~~~~~G~~etL~~~~~~ 245 (657)
.+.+-+..|.++.+++..|+ ..|-+|++.....-...+.+..+...|| .++|.....|-...|+.
T Consensus 117 vy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~---- 192 (1022)
T KOG0961|consen 117 VYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRE---- 192 (1022)
T ss_pred HHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHH----
Confidence 99999999999999999886 4567888877777777788888888885 67888888888899988
Q ss_pred CccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCC-Cccc----ccccc--cceEEEEe--
Q 006184 246 GINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQ-FTVE----GTIWK--ACKLFRLE-- 316 (657)
Q Consensus 246 ~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~-~~~~----~~~~~--~~~~~~~~-- 316 (657)
++.+.+++||+++|+++||+++|+|.++.++|....+..-..|+......|. +..| ..+.. ......++
T Consensus 193 --lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp 270 (1022)
T KOG0961|consen 193 --LTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFP 270 (1022)
T ss_pred --hhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecC
Confidence 9999999999999999999999999999999998877665555433322222 1100 01111 11111221
Q ss_pred -ecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHH--hCCCcceeeeeeCCCCCCccccccEEEEEEE
Q 006184 317 -AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK--GRGWATSISAGVGDEGMHRSSIAYIFVMSIH 393 (657)
Q Consensus 317 -~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR--~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~ 393 (657)
.+..+..|.++|-+++..+-+...++.+|-.+|....-.-+.+.+- +--++.+++......- ...+.+.+.
T Consensus 271 ~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~~v------rc~i~L~f~ 344 (1022)
T KOG0961|consen 271 TDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAEGV------RCDIRLNFA 344 (1022)
T ss_pred CcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeeccc------ceeEEEeec
Confidence 2345678999999999777777789999999999755555555543 6677877776554311 114555554
Q ss_pred eCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCC-ChhHHHHHHHHhcCCCCCcc---------
Q 006184 394 LTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ-PQDDYAAELAGNLLIYPAEH--------- 463 (657)
Q Consensus 394 l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~-~~~~~~~~la~~l~~~~~~~--------- 463 (657)
.-| ++++++....+++.+. ....++-..+...-...+.++....+. .+..+.+.+... +.|+-++
T Consensus 345 gVP--~EKi~~~~~k~l~~l~--et~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d-~~ygnedg~~l~~~lk 419 (1022)
T KOG0961|consen 345 GVP--VEKIDECAPKFLDKLV--ETANIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGD-QLYGNEDGELLKKRLK 419 (1022)
T ss_pred CCc--HHHhhhhhHHHHHHHH--HhcccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhh-hhccCcchhHHHHHHH
Confidence 444 2455555554444443 344566443333333333444433333 344454444432 2233211
Q ss_pred ccccccccccCCHHHHHHHHhh-cCcCceEEEEEeCCC
Q 006184 464 VIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKSF 500 (657)
Q Consensus 464 ~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~~~ 500 (657)
-+++...+.++...+-++++++ +...+..+|+.-|.+
T Consensus 420 ~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVia~Ps~ 457 (1022)
T KOG0961|consen 420 ELDFLKKLKSWPAKDWVQLLNKYFVENPSATVIAVPSE 457 (1022)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHhccCCCeEEEecCcH
Confidence 1233456788999999999998 554555556666654
No 15
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.86 E-value=2.3e-20 Score=178.66 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=142.1
Q ss_pred cHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCC---CCCCCCcccccccccceEEEEeecC-cccE
Q 006184 248 NLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGP---QIKPQFTVEGTIWKACKLFRLEAVK-DVHI 323 (657)
Q Consensus 248 ~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 323 (657)
++.++|++||++||+|+||+++|+||++.++++++|+++|+.|+... ...+......+.......+...... ....
T Consensus 2 it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T PF05193_consen 2 ITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQSI 81 (184)
T ss_dssp --HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSEE
T ss_pred CCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999999999999764 2222211111112223333333322 7889
Q ss_pred EEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccH
Q 006184 324 LDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 402 (657)
Q Consensus 324 l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~ 402 (657)
+.++|+.++.....+..++.+++.+|++...++|+..|| ++|++|++.++..... +.|.|.|.+.+++ +++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~-----~~~~~~i~~~~~~---~~~ 153 (184)
T PF05193_consen 82 VSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYR-----DSGLFSISFQVTP---ENL 153 (184)
T ss_dssp EEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEES-----SEEEEEEEEEEEG---GGH
T ss_pred cccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccc-----cceEEEEEEEcCc---ccH
Confidence 999999998744556789999999999999999999999 9999999999855322 3459999999998 699
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006184 403 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 433 (657)
Q Consensus 403 ~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~ 433 (657)
+++++.+.++|+.|++.|+++++|+++|+.+
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999864
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.37 E-value=3.2e-10 Score=127.85 Aligned_cols=398 Identities=12% Similarity=0.062 Sum_probs=243.2
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCcccee----eCC-------CceEEEEEe
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAY----TET-------EHTCYHFEI 166 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~----t~~-------e~t~~~~~~ 166 (657)
...+.+.+.. ++-.-...|-|.-|..-+.-+||++++- .++..++..+-|.+++. ++. ...++.+.+
T Consensus 548 i~yl~~~~~~-~~l~~~llpyL~L~~~~l~~lgt~~~~y-~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~ 625 (978)
T COG1026 548 ITYLRLYFDL-DMLPSELLPYLPLFAFALTNLGTETYSY-KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKA 625 (978)
T ss_pred eEEEEEEeec-CCCChhhhhhHHHHHHHHHhcCCCCcCH-HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEe
Confidence 9999999999 5555566899999999999999999998 48888888887655443 222 234566678
Q ss_pred ChhhHHHHHHHHHHhhhCCCC-ChHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHhhCCCCCCCCCCCCC--Chhhhhhh
Q 006184 167 KREFLKGALMRFSQFFISPLM-KVEAMEREVLAVDSEFNQALQN-DACRLQQLQCHTSQLGHAFNKFFWG--NKKSLIGA 242 (657)
Q Consensus 167 ~~~~l~~aL~~la~~~~~P~f-~~~~~e~e~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G--~~etL~~~ 242 (657)
..+..+.+++++.+++.++.| +.+.+...++...+.+.....+ ....+.....+-.+....+.....| -.+-|..-
T Consensus 626 l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l 705 (978)
T COG1026 626 LRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLREL 705 (978)
T ss_pred hhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHH
Confidence 889999999999999999999 6656655555555555554444 3333333333333333232222222 11111110
Q ss_pred hh----cCc-cHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCC---C--CCCCCCcccccccc-cce
Q 006184 243 ME----KGI-NLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKG---P--QIKPQFTVEGTIWK-ACK 311 (657)
Q Consensus 243 ~~----~~~-~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~---~--~~~~~~~~~~~~~~-~~~ 311 (657)
.+ +-. -..+.|.+.+++.+..+|+.+++.|+. +.+.+.+++-|..+... . .+.+.......... ...
T Consensus 706 ~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~--~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (978)
T COG1026 706 SSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDI--DKILDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSE 783 (978)
T ss_pred HHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecCh--hhhHHHHHHHhhhhhcccCcccccCCCCCCcchhhhccccc
Confidence 00 000 345678889999999999988888865 45556666666555421 1 11111100001111 122
Q ss_pred EEEEeecCcccEEEEEEEcCC-CchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEE
Q 006184 312 LFRLEAVKDVHILDLTWTLPC-LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVM 390 (657)
Q Consensus 312 ~~~~~~~~~~~~l~i~f~~p~-~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i 390 (657)
.. +.+. +.....++|++-. ...+++..++.+++++|+. +-|+..+|.+|.||+.++..... .|.|..
T Consensus 784 ~~-ii~~-p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~---~~lw~~IR~~GGAYGa~as~~~~-------~G~f~f 851 (978)
T COG1026 784 AT-IIPS-PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS---GYLWNKIREKGGAYGASASIDAN-------RGVFSF 851 (978)
T ss_pred eE-Eecc-HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc---chhHHHHHhhccccccccccccC-------CCeEEE
Confidence 22 2221 2234445555432 2344467899999999995 77889999999999998877642 348888
Q ss_pred EEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHH-HHHHhcCCCCCcccccccc
Q 006184 391 SIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAA-ELAGNLLIYPAEHVIYGEY 469 (657)
Q Consensus 391 ~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~-~la~~l~~~~~~~~l~~~~ 469 (657)
..--+| ++-+..+...+.++.|....+++.++++++--.......- .++..... .....+....++.--....
T Consensus 852 ~sYRDP----n~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~~~d~p--~sp~~~~~~s~~~~~sg~~~~~~qa~re 925 (978)
T COG1026 852 ASYRDP----NILKTYKVFRKSVKDLASGNFDERDLEEAILGIISTLDTP--ESPASEGSKSFYRDLSGLTDEERQAFRE 925 (978)
T ss_pred EecCCC----cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcccccc--cCCcceehhhHHHHHhcCCHHHHHHHHH
Confidence 777777 7889999999999999988999999999986655543322 12222221 1111222233322222345
Q ss_pred ccccCCHHHHHHHHhh-cCc--CceEEEEEeCCCCCCCCccccceecceeeeec
Q 006184 470 MYEVWDEEMIKHLLGF-FMP--ENMRIDVVSKSFAKSQDFHYEPWFGSRYTEED 520 (657)
Q Consensus 470 ~i~~vt~edI~~~~~~-l~~--~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~ 520 (657)
.+-.+|++||..++++ |.+ ++..+++++.. .+......-+|..+.+++
T Consensus 926 ~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~~---e~~~e~~~~~g~~~~ve~ 976 (978)
T COG1026 926 RLLDVTKEDIKEVMDKYLLNFSSENSIAVFAGE---EKPQENFETLGFNVEVEE 976 (978)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccceEEEEech---hhhhhhhhhcCcceeeee
Confidence 6788999999999984 552 44444444432 111122233555555544
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.30 E-value=1.6e-09 Score=130.16 Aligned_cols=380 Identities=9% Similarity=-0.015 Sum_probs=235.3
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCcccee----eC------------CCceE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAY----TE------------TEHTC 161 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~----t~------------~e~t~ 161 (657)
.+.+.+.+....+.+ ...+=|.-|+.-+.-+||++++. .++...+..+-|.+.+. ++ .....
T Consensus 681 i~y~~~~fdl~~l~~-e~~~yl~L~~~~l~~~gT~~~s~-~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1119)
T PTZ00432 681 ILYLDFAFSLDSLTV-DELKYLNLFKALLKENGTDKLSS-EEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLN 758 (1119)
T ss_pred eEEEEEEecCCCCCH-HHHhhHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEE
Confidence 999999999887654 34566666656555689999998 58999999987766654 22 22466
Q ss_pred EEEEeChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhccCCHHHH-HHHHHHhhCCCCCCCCCCCCC--Chh
Q 006184 162 YHFEIKREFLKGALMRFSQFFISPLMKVEA-MEREVLAVDSEFNQALQNDACR-LQQLQCHTSQLGHAFNKFFWG--NKK 237 (657)
Q Consensus 162 ~~~~~~~~~l~~aL~~la~~~~~P~f~~~~-~e~e~~~v~~E~~~~~~~~~~~-~~~~~~~~~~~~hp~~~~~~G--~~e 237 (657)
+.+.+..++++.+++++.+++.++.|+... +...+....+.+.+...+.... +.....+-..+..-+.-...| ...
T Consensus 759 v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~ 838 (1119)
T PTZ00432 759 VRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLL 838 (1119)
T ss_pred EEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHH
Confidence 777889999999999999999999998765 6656666666666555533322 222221111101001111111 222
Q ss_pred hhhhhh-----hcCccHHHHHHHHHHhhccCCccEEEEEcCCC-HHHHHHHHHHHhccccCC----C--CCCCCCccc--
Q 006184 238 SLIGAM-----EKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP-LDTLQSWVVELFANVRKG----P--QIKPQFTVE-- 303 (657)
Q Consensus 238 tL~~~~-----~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~-~d~l~~lv~~~f~~ip~~----~--~~~~~~~~~-- 303 (657)
-|+.-. ....-..+.|.+.+++.++.++|.+.|+|+.+ .+.+.+.+...+..++.. . .....+...
T Consensus 839 fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 918 (1119)
T PTZ00432 839 FLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVKEVL 918 (1119)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 222100 00012556688899999999999999999874 566667666677766421 1 011111000
Q ss_pred ----ccccccceEEEEeecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCC
Q 006184 304 ----GTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGM 379 (657)
Q Consensus 304 ----~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~ 379 (657)
.+.......+ +.|. ....+..+.+. ....+....++.|++++|.. +-|+..+|.+|.||+.++....
T Consensus 919 ~~~~~~~~~~~e~~-~~p~-~V~yv~~~~~~-~~~~~~~~~~l~Vl~~~L~~---~yLw~~IR~~GGAYG~~~~~~~--- 989 (1119)
T PTZ00432 919 DKKLMESVDKNEFI-VLPT-RVNFVGMGGKL-FDKSDKVDGSFQVIVHYLKN---SYLWKTVRMSLGAYGVFADLLY--- 989 (1119)
T ss_pred cccccCCcccceEE-EccC-ceeEEEEeccc-ccCCCccCHHHHHHHHHHcc---ccchHHHcccCCccccCCccCC---
Confidence 0000112222 2222 23334444222 12233346789999999995 7799999999999998765432
Q ss_pred CccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhhhhccCCChhHHH-HHHHHhc
Q 006184 380 HRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ--VSPQKWIFKELQDIGNMEFRFAEEQPQDDYA-AELAGNL 456 (657)
Q Consensus 380 ~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~--~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~-~~la~~l 456 (657)
.|.|.++.-=+| ++.+.++...+..+.|++ ..++++++++++-.....+.. -.+|.... ..+...+
T Consensus 990 -----~G~~~f~SYRDP----n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~--p~~p~~~g~~~~~~~l 1058 (1119)
T PTZ00432 990 -----TGHVIFMSYADP----NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDK--PLHVDELSKLALLRII 1058 (1119)
T ss_pred -----CCeEEEEEecCC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC--CCChHHHHHHHHHHHH
Confidence 247776666666 888999999999999988 569999999998766655432 12343333 2233334
Q ss_pred CCCCCccccccccccccCCHHHHHHHHhhcC--cCceEEEEEeCC
Q 006184 457 LIYPAEHVIYGEYMYEVWDEEMIKHLLGFFM--PENMRIDVVSKS 499 (657)
Q Consensus 457 ~~~~~~~~l~~~~~i~~vt~edI~~~~~~l~--~~n~~i~iv~~~ 499 (657)
.....+........+-++|+++|+++++.+. .+...++++|++
T Consensus 1059 ~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~ 1103 (1119)
T PTZ00432 1059 RNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNS 1103 (1119)
T ss_pred cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECH
Confidence 4444455455556677899999999998743 244456666654
No 18
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.1e-07 Score=97.31 Aligned_cols=378 Identities=9% Similarity=0.023 Sum_probs=222.3
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCcccee----eCCCce----EE--EEEeC
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAY----TETEHT----CY--HFEIK 167 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~----t~~e~t----~~--~~~~~ 167 (657)
...+.+....|++-+ +-.|-+.-||+.++-+||...+- .++.+.+..+-|-+.++ ++...+ .+ ...+.
T Consensus 582 i~Y~r~~~~l~~~p~-eL~PylPlfc~sll~lGt~~lsf-~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l 659 (998)
T KOG2019|consen 582 ITYTRVVFDLNSLPE-ELLPYLPLFCQSLLNLGTGDLSF-VELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSML 659 (998)
T ss_pred eEEEEEeeccccCcH-HhhcchHHHHHHHHhcCCCcccH-HHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhh
Confidence 899999999999533 22688999999999999999887 68888888876544332 222222 22 22345
Q ss_pred hhhHHHHHHHHHHhhhCCCCChH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh--hh--
Q 006184 168 REFLKGALMRFSQFFISPLMKVE-AMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI--GA-- 242 (657)
Q Consensus 168 ~~~l~~aL~~la~~~~~P~f~~~-~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~--~~-- 242 (657)
..+++..++++..+|.++.|..+ .+...+....+++.+...+....+...-..........-....|-.+.|+ ..
T Consensus 660 ~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~ 739 (998)
T KOG2019|consen 660 DRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLE 739 (998)
T ss_pred cCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHH
Confidence 66799999999999999999854 45555566666776666555444333222222211111112223333332 00
Q ss_pred -hhcC--ccHHHHHHHHHHhhccCCccEEEEEcC-CCHHHHHHHHHHHhccccCCCCCCCCCcccccccc--cceEEEEe
Q 006184 243 -MEKG--INLQEQIMKLYMNYYQGGLMKLVVIGG-EPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK--ACKLFRLE 316 (657)
Q Consensus 243 -~~~~--~~~~~~L~~f~~~~y~~~~m~lvIvG~-~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~--~~~~~~~~ 316 (657)
+..+ .-..+.|.+..+-....++|.+.|..+ ..+..+++.|++++..+|...+..+... ..+..+ ...++.+.
T Consensus 740 ~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st-~d~r~p~~~~~i~~~~ 818 (998)
T KOG2019|consen 740 EKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKST-WDARLPLRSEAIRVVI 818 (998)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccC-ccccCCCCceeEEEec
Confidence 0000 012334455555556789999999854 6688899999999999985332221110 111111 12222233
Q ss_pred ecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCc
Q 006184 317 AVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD 396 (657)
Q Consensus 317 ~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~ 396 (657)
|.-+.+.+.-+..+-+ ..+.+..++.+|+.+|.+ .-|..++|++|.||+-++.... ..|.|.++--=+|
T Consensus 819 P~fqvnyvgka~~~vp-yt~~d~asl~vlS~~lt~---k~Lh~evRekGGAYGgg~s~~s-------h~GvfSf~SYRDp 887 (998)
T KOG2019|consen 819 PTFQVNYVGKAGLGVP-YTHPDGASLQVLSKLLTN---KWLHDEVREKGGAYGGGCSYSS-------HSGVFSFYSYRDP 887 (998)
T ss_pred cccchhhhhhhccccc-CCCCCCcHHHHHHHHHHH---HHHHHHHHHhcCccCCcccccc-------ccceEEEEeccCC
Confidence 3211111111111111 122355789999999997 6789999999999997765543 3468888777666
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCcccccc--ccccccC
Q 006184 397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYG--EYMYEVW 474 (657)
Q Consensus 397 ~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~--~~~i~~v 474 (657)
+.-+.++.....-.-++...+++..+++||--...+...-.. |. +..+...|. +..+-+.. ...+-++
T Consensus 888 ----n~lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~~VDap~~--P~--~kG~~~fl~--gvtDemkQarREqll~v 957 (998)
T KOG2019|consen 888 ----NPLKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFGDVDAPQL--PD--AKGLLRFLL--GVTDEMKQARREQLLAV 957 (998)
T ss_pred ----chhhHHHhhcchhhhhhcCCccccchhhhhhhhcccccCCcC--Cc--ccchHHHHh--cCCHHHHHHHHHHHHhh
Confidence 566777777777777887789999999998655444322111 11 111222222 22222211 2345578
Q ss_pred CHHHHHHHHhh-c-CcC-ceEEEEEeCC
Q 006184 475 DEEMIKHLLGF-F-MPE-NMRIDVVSKS 499 (657)
Q Consensus 475 t~edI~~~~~~-l-~~~-n~~i~iv~~~ 499 (657)
+..++.+++.. + ..+ -..+.+.|++
T Consensus 958 Sl~d~~~vae~yl~~~~~~~~vav~g~E 985 (998)
T KOG2019|consen 958 SLKDFKAVAEAYLGVGDKGVAVAVAGPE 985 (998)
T ss_pred hHHHHHHHHHHHhccCCcceEEEeeCcc
Confidence 99999999986 3 333 3344555554
No 19
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.7e-06 Score=98.10 Aligned_cols=384 Identities=11% Similarity=0.019 Sum_probs=234.0
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
++.+.+.+..-.........=+..++..+++.-..++.. . ...-|-+++...+...-.+++++-++.+..++..
T Consensus 526 K~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y----~--A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 526 KASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSY----Q--ASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred cceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhh----H--HHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 777887776443333222233444455555543333222 1 2334556666666678888899999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHH
Q 006184 178 FSQFFISPLMKVEAMEREVLAVDSEFNQAL-QNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (657)
Q Consensus 178 la~~~~~P~f~~~~~e~e~~~v~~E~~~~~-~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f 256 (657)
|-+.+..-.++++.++..|..+.++++... ..|-.++.+.+..++.+.+. ++ .--.+.|.. ++.+++..|
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~-s~--~e~~~~l~~------v~~~e~~~f 670 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYW-SR--EERRNALES------VSVEEFAAF 670 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCc-CH--HHHHHHhhh------ccHHHHHHH
Confidence 999999999999999999999999998766 45888888888887776543 11 112334445 899999999
Q ss_pred HHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccc-cccceEEEEe--ecCcccEEEEEEEcCCC
Q 006184 257 YMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTI-WKACKLFRLE--AVKDVHILDLTWTLPCL 333 (657)
Q Consensus 257 ~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~i~f~~p~~ 333 (657)
-...+.+......|.|+++.+++.++++..-..+++..... ...+... ..++..+... ...+.....+.++.-
T Consensus 671 ~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~--~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~-- 746 (937)
T COG1025 671 RDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTW--YRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ-- 746 (937)
T ss_pred HHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcc--cCCCceeccCCCeeEeeeccCCcccccceeEeccc--
Confidence 99999999999999999999999999887766666544321 1101011 1123222222 222222222332222
Q ss_pred chhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHH
Q 006184 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 412 (657)
Q Consensus 334 ~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~ 412 (657)
.+++ ....+++|+++-..--.+..|| ++.+-|-|.++........ -+.+.+.....+.+...+-++.+++.
T Consensus 747 ~~~~---~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~-----gi~f~vqS~~~~p~~L~~r~~~F~~~ 818 (937)
T COG1025 747 YDEI---KSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTP-----GIGFLVQSNSKSPSYLLERINAFLET 818 (937)
T ss_pred cchH---HHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCcc-----ceEEEEeCCCCChHHHHHHHHHHHHH
Confidence 1122 3345566666555578899999 9999999998876543322 24455555543333444555555555
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhc--CCCCCccccccccccccCCHHHHHHHHhh-cCcC
Q 006184 413 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL--LIYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPE 489 (657)
Q Consensus 413 l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l--~~~~~~~~l~~~~~i~~vt~edI~~~~~~-l~~~ 489 (657)
..... .+.++++|+..|+-+.+++.-... +....+..+-... ..+..++-......+..+|.+++.++... +...
T Consensus 819 ~~~~l-~~ms~e~Fe~~k~alin~il~~~~-nl~e~a~r~~~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~ 896 (937)
T COG1025 819 AEPEL-REMSEEDFEQIKKALINQILQPPQ-NLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYE 896 (937)
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhccc
Confidence 54432 358899999999988888765433 2333333333111 11111111111234778999999887764 4433
Q ss_pred ---ceEEEEEeCCCCCCCCccccce
Q 006184 490 ---NMRIDVVSKSFAKSQDFHYEPW 511 (657)
Q Consensus 490 ---n~~i~iv~~~~~~~~~~~~e~~ 511 (657)
.+.+.+.|+.- +.+....+-|
T Consensus 897 ~g~~l~~~i~g~~~-e~~~~~~~~~ 920 (937)
T COG1025 897 QGSKLLSHIRGQNG-EAEYAHPEGW 920 (937)
T ss_pred ccceeeeeeecccc-ccccccCCce
Confidence 34445556432 3333444444
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.7e-05 Score=89.98 Aligned_cols=357 Identities=11% Similarity=0.008 Sum_probs=218.2
Q ss_pred eEEEEEEec-ccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHH
Q 006184 98 KAAAAMCVG-MGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALM 176 (657)
Q Consensus 98 ~~~~~l~v~-~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~ 176 (657)
++.+.+.+. -|+...|. ..+++++...++.--. +++.-.....|-.+..+.+...-...+..-++.+..+++
T Consensus 533 ka~~~~~~~~p~~~~~~~-~~~l~~l~~~~l~d~l------~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~ 605 (974)
T KOG0959|consen 533 KAYTKFDFICPGATQSPL-NSVLSTLYVRLLKDQL------NEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLE 605 (974)
T ss_pred hhheeeeecCcccccCHH-HHHHHHHHHHHHHHHH------hHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHH
Confidence 566666554 45555553 5677777777665321 223333444566667777777777778888999999999
Q ss_pred HHHHhhhCCCCChHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHH
Q 006184 177 RFSQFFISPLMKVEAMEREVLAVDSEFNQ-ALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 255 (657)
Q Consensus 177 ~la~~~~~P~f~~~~~e~e~~~v~~E~~~-~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~ 255 (657)
.+.+++.+-..+++.++..++.+..++++ ...+|..+..+.+..++ ..+.+.... -.+.|.. ++.+++..
T Consensus 606 ~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll-~~~~W~~~e--~~~al~~------~~le~~~~ 676 (974)
T KOG0959|consen 606 KVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLL-EESIWSKEE--LLEALDD------VTLEDLES 676 (974)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHh-hccccchHH--HHHHhhc------ccHHHHHH
Confidence 99999999999999999999999999998 55667777666665544 333433211 2233333 89999999
Q ss_pred HHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCC--CCCCcc---cccc--cc-cceEEEEee---cCcccEE
Q 006184 256 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI--KPQFTV---EGTI--WK-ACKLFRLEA---VKDVHIL 324 (657)
Q Consensus 256 f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~--~~~~~~---~~~~--~~-~~~~~~~~~---~~~~~~l 324 (657)
|-..++++--|.+.|.||+..++...+++..+..+ +...+ .+.+.. +... .+ +...+.... ..+.+.+
T Consensus 677 F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l-~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i 755 (974)
T KOG0959|consen 677 FISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL-KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCI 755 (974)
T ss_pred HHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-hccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceE
Confidence 99999999999999999999999999866555555 22211 111100 0001 11 222222222 2234566
Q ss_pred EEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHH
Q 006184 325 DLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIF 403 (657)
Q Consensus 325 ~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~ 403 (657)
.+.+.+ .....+...-+.++..++. .-+|..|| +..+-|-++++....... . -+.|.+..+ .+.+.++
T Consensus 756 ~~~~Q~-~~~~~~~~~~~~L~~~li~----ep~Fd~LRTkeqLGYiv~~~~r~~~G~-~----~~~i~Vqs~-~~~~~le 824 (974)
T KOG0959|consen 756 EVYYQI-GVQDTRDNAVLGLLEQLIK----EPAFDQLRTKEQLGYIVSTGVRLNYGT-V----GLQITVQSE-KSVDYLE 824 (974)
T ss_pred EEEEEc-ccchhHHHHHHHHHHHHhc----cchHHhhhhHHhhCeEeeeeeeeecCc-c----eeEEEEccC-CCchHHH
Confidence 777775 3333334445566666666 67799999 766666666555432211 1 344444444 5556666
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCC---ChhHHHHHHHHhcCCCCCccccccccccccCCHHHHH
Q 006184 404 DIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQ---PQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIK 480 (657)
Q Consensus 404 ~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~---~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~ 480 (657)
.-|..+++.+...-. ..++++|+.-+..+...+.-.... ....+|..+... .|..+..-.....+.+++.+++-
T Consensus 825 ~rIe~fl~~~~~~i~-~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~~--~y~f~r~~~~v~~l~~i~k~~~i 901 (974)
T KOG0959|consen 825 ERIESFLETFLEEIV-EMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEIIIG--QYNFDRDEKEVEALKKITKEDVI 901 (974)
T ss_pred HHHHHHHHHHHHHHH-hcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHHhh--hhcchhhHHHHHHHHhhhHHHHH
Confidence 666666666655433 356777888776665554432221 123445555432 23222222222347889999998
Q ss_pred HHHhh
Q 006184 481 HLLGF 485 (657)
Q Consensus 481 ~~~~~ 485 (657)
.+...
T Consensus 902 ~~f~~ 906 (974)
T KOG0959|consen 902 NFFDE 906 (974)
T ss_pred HHHHh
Confidence 88764
No 21
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.02 E-value=0.00014 Score=75.91 Aligned_cols=164 Identities=19% Similarity=0.274 Sum_probs=97.0
Q ss_pred cccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeCh-hhHHHHHHHH-HHhhh
Q 006184 106 GMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKR-EFLKGALMRF-SQFFI 183 (657)
Q Consensus 106 ~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~-~~l~~aL~~l-a~~~~ 183 (657)
+.|.-.|-.+.-|+||+|||.|-. | +-.+|+ .||+|.+.+..|...... ..-..|+..+ +.+|.
T Consensus 26 ~FGFe~DI~~iLGiAHLLEHILIs----F----D~~~F~------ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~ 91 (590)
T PF03410_consen 26 NFGFENDIGEILGIAHLLEHILIS----F----DSSKFL------ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFD 91 (590)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c----chHHhh------cccchhhhhhhhhhhhccCCChhHHHHHHHHHhhc
Confidence 466666777789999999999973 2 222333 389999999999886433 3334455444 44444
Q ss_pred CC----CCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHh
Q 006184 184 SP----LMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (657)
Q Consensus 184 ~P----~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~ 259 (657)
+- .|+...++..+..+..|+= ..+.-...++.+.-+.. |.-|.. |-..-|.+-. ..+.-|..--++
T Consensus 92 ~g~Lk~~F~~~~i~~hikELENEYY--FRnEvfHCmDvLtfL~g-GDLYNG---GRi~ML~~l~----~i~~mL~~RM~~ 161 (590)
T PF03410_consen 92 NGKLKDNFSRSKIKNHIKELENEYY--FRNEVFHCMDVLTFLGG-GDLYNG---GRIDMLNNLN----DIRNMLSNRMHR 161 (590)
T ss_pred CCcccccccHhHHHHHHHHHhhhhh--hhhhHHHHHHHHHHhcC-CcccCC---chHHHHhhhH----HHHHHHHHHHHh
Confidence 43 3777777777776666663 23444555666655443 444432 3334443200 123333333332
Q ss_pred hccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCC
Q 006184 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI 296 (657)
Q Consensus 260 ~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~ 296 (657)
....|.++.|- .++ +....++++.||.+|..+..
T Consensus 162 -I~GpniVIFVk-~l~-~~~l~lL~~TFGtLP~cP~~ 195 (590)
T PF03410_consen 162 -IIGPNIVIFVK-ELN-PNILSLLSNTFGTLPSCPLT 195 (590)
T ss_pred -hcCCcEEEEEe-ccC-HHHHHHHHHhcCCCCCCccc
Confidence 24455555554 455 56778999999999987643
No 22
>PHA03081 putative metalloprotease; Provisional
Probab=97.81 E-value=0.00047 Score=72.17 Aligned_cols=164 Identities=16% Similarity=0.256 Sum_probs=97.9
Q ss_pred cccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEe-ChhhHHHHHHHHHHhhhC
Q 006184 106 GMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEI-KREFLKGALMRFSQFFIS 184 (657)
Q Consensus 106 ~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~-~~~~l~~aL~~la~~~~~ 184 (657)
+.|.-.|-.+.-|+||+|||.|-. | +-..|+ .||+|.+.+..|.... .......|+..+...|..
T Consensus 26 ~fgfe~di~~~lg~ahllehili~----f----d~~~f~------anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~ 91 (595)
T PHA03081 26 NFGFENDIGEILGIAHLLEHILIS----F----DSSKFV------ANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFD 91 (595)
T ss_pred ccccccchHHHHhHHHHHHHHeee----c----chHHhc------ccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhcc
Confidence 466666777789999999999963 1 222332 4789999988887753 333445677766666665
Q ss_pred CC-----CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHh
Q 006184 185 PL-----MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (657)
Q Consensus 185 P~-----f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~ 259 (657)
+. |+...++..+..+.+|+= ..+.....++.+.-+. +|.-|. .|-..-|.+-. ..++-|..--+
T Consensus 92 ~~~Lr~~F~~~~ik~~ikELENEYY--FRnEvfHCmDvLTfL~-gGDLYN---GGRi~ML~~l~----~i~~~L~~RM~- 160 (595)
T PHA03081 92 NGKLKDNFSLSKIRNHIKELENEYY--FRNEVFHCMDVLTFLG-GGDLYN---GGRIDMLDNLN----DVRDMLSNRMH- 160 (595)
T ss_pred CCccccccchhhHHHHHHHHhhhhh--hhhhhHHHHHHHHHhc-CCcccC---CchHHHHhhhH----HHHHHHHHHHH-
Confidence 44 666667666666666653 2344455566665444 444443 23444443200 12233333222
Q ss_pred hccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCC
Q 006184 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI 296 (657)
Q Consensus 260 ~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~ 296 (657)
..+..|.++.|- .++ +....++.+.||.+|..+..
T Consensus 161 ~I~GpniVIFVk-~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 161 RISGPNIVIFVK-ELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred hhcCCcEEEEEe-ccC-HHHHHHHHHhcCCCCCCccc
Confidence 234555555554 455 56778999999999987643
No 23
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0024 Score=69.75 Aligned_cols=313 Identities=12% Similarity=0.024 Sum_probs=184.0
Q ss_pred eCCCceEEEEEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCC-C
Q 006184 155 TETEHTCYHFEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFF-W 233 (657)
Q Consensus 155 t~~e~t~~~~~~~~~~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~-~ 233 (657)
+..+-.++.+.|.++..+.....+..++..-.|+++.+..-.+....++.-++.+-...+.......+|+........ .
T Consensus 631 ~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~ 710 (1022)
T KOG0961|consen 631 LYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDE 710 (1022)
T ss_pred cchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccH
Confidence 556778899999999999999999999999999999999999999999998888888888888888888765543211 0
Q ss_pred CChhhhhh----hhhcC-ccHHHHHHHHHHhhccCCccEEEEEcCCCH-HH-HHHHHHHHhccccCCCCCCCCCccc---
Q 006184 234 GNKKSLIG----AMEKG-INLQEQIMKLYMNYYQGGLMKLVVIGGEPL-DT-LQSWVVELFANVRKGPQIKPQFTVE--- 303 (657)
Q Consensus 234 G~~etL~~----~~~~~-~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~-d~-l~~lv~~~f~~ip~~~~~~~~~~~~--- 303 (657)
-..+.+.. ...++ .-..+.+.+..+-....+.+.+-++||++. ++ +..|- ....+ ++-..|...+..+
T Consensus 711 L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn-~l~~~-~~~~nP~~~f~~tf~~ 788 (1022)
T KOG0961|consen 711 LVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWN-WLQAD-PRFGNPGHQFSATFEA 788 (1022)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCch-hhhcC-cccCCchhhccccccc
Confidence 01111110 00111 012222222222112457888999998872 22 22210 11111 1111111111100
Q ss_pred --ccc--cc-cceE-EEEeecCcccEEEEEEEcCC--CchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeC
Q 006184 304 --GTI--WK-ACKL-FRLEAVKDVHILDLTWTLPC--LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVG 375 (657)
Q Consensus 304 --~~~--~~-~~~~-~~~~~~~~~~~l~i~f~~p~--~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~ 375 (657)
..+ +. ..+. +.-.|..+.+ .+.+.+|. .+.+....+..+++++|+. ..|-++..+|..|++|+.+....
T Consensus 789 ~~~~s~e~gsssk~~~I~~p~sESs--~l~~sip~~~~w~dpel~~~~l~~~YL~~-~eGPfW~~IRG~GLAYGanm~~~ 865 (1022)
T KOG0961|consen 789 GENVSLELGSSSKELLIGVPGSESS--FLYQSIPLDANWNDPELIPAMLFGQYLSQ-CEGPFWRAIRGDGLAYGANMFVK 865 (1022)
T ss_pred CcccceeccCCcceeEecCCCcccc--ceeeecccccccCCcchhHHHHHHHHHHh-cccchhhhhcccchhccceeEEe
Confidence 001 11 1122 2223333334 45555554 4555567888999999985 77889999999999999887766
Q ss_pred CCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhhhhccCCChhHHHHHH-
Q 006184 376 DEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ--VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAEL- 452 (657)
Q Consensus 376 ~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~--~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~l- 452 (657)
... +.++..+...+ ++-++-+.-.+.++.+.. ..+++.+++.||........-.+. ....-+...
T Consensus 866 ~d~-------~~~~~~iyr~a----d~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~En-g~~~~a~~~~ 933 (1022)
T KOG0961|consen 866 PDR-------KQITLSIYRCA----DPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKREN-GTVSGAAKIS 933 (1022)
T ss_pred ccC-------CEEEEEeecCC----cHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhc-cceechHHHH
Confidence 532 26666666554 566677777777777765 348899999998766654432221 111111111
Q ss_pred -HHhcCCCCCccccccccccccCCHHHHHHHHh
Q 006184 453 -AGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLG 484 (657)
Q Consensus 453 -a~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~ 484 (657)
..+....+-..-..+-.++..+|.+++.++.+
T Consensus 934 ~l~~~~q~~~~fn~~~leri~nvT~~~~~~~~~ 966 (1022)
T KOG0961|consen 934 ILNNFRQTPHPFNIDLLERIWNVTSEEMVKIGG 966 (1022)
T ss_pred HHHHHHhcCCcccHHHHHHHHHhhHHHHHHhcc
Confidence 11111122111122334688999999999876
No 24
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=96.80 E-value=0.017 Score=63.52 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=108.1
Q ss_pred cceEEEEeecC--cccEEEEEEEcCC-CchhhhccHHHHHHHHhcCCCCC----hHHHHHHhCCCcceeeeeeCCCCCCc
Q 006184 309 ACKLFRLEAVK--DVHILDLTWTLPC-LHQEYLKKSEDYLAHLLGHEGRG----SLHSFLKGRGWATSISAGVGDEGMHR 381 (657)
Q Consensus 309 ~~~~~~~~~~~--~~~~l~i~f~~p~-~~~~~~~~~~~~l~~lLg~~~~~----sL~~~LR~~Gl~ysv~a~~~~~~~~~ 381 (657)
.|..+...+.. +...+.+.+..-. .......-..++|.|++..+..+ .+.+.+-+.|.......+...
T Consensus 24 nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~----- 98 (438)
T COG0612 24 NGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDY----- 98 (438)
T ss_pred CCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchh-----
Confidence 33334444433 4445555555322 22222334568888888654333 477777778877544433322
Q ss_pred cccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHH-HhcCCC-
Q 006184 382 SSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELA-GNLLIY- 459 (657)
Q Consensus 382 ~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la-~~l~~~- 459 (657)
. .+.+. . .+ ++.+++++.+.+.+..- -++++++++-|+.+..++...... |.+++.... ..+...
T Consensus 99 t----~y~~~-~-l~---~~~~~~l~llad~l~~p---~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~ 165 (438)
T COG0612 99 T----VYYLS-V-LP---DNLDKALDLLADILLNP---TFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNH 165 (438)
T ss_pred h----hhhhh-h-ch---hhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccC
Confidence 1 33344 2 33 57888888877666543 489999999999988888776554 665554433 333222
Q ss_pred CCcc-ccccccccccCCHHHHHHHHhh-cCcCceEEEEEeC
Q 006184 460 PAEH-VIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSK 498 (657)
Q Consensus 460 ~~~~-~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~ 498 (657)
+... ++-....++++|+++++++.++ +.|+||.++++|+
T Consensus 166 p~~~~~~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGd 206 (438)
T COG0612 166 PLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGD 206 (438)
T ss_pred CCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecC
Confidence 2222 3333567999999999999987 9999999999996
No 25
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=96.55 E-value=0.03 Score=56.38 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=68.7
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCC-----------CceEEEEEe
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTET-----------EHTCYHFEI 166 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~-----------e~t~~~~~~ 166 (657)
.+.+.+.+..+.+. +.+.+=+.-|..-+--+||++|+. .++...+..+-|.+++++.. -...+.+.+
T Consensus 91 I~Y~~l~fdl~~l~-~e~l~yl~Ll~~ll~~lgT~~~sy-~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~ 168 (248)
T PF08367_consen 91 IVYVRLYFDLSDLP-EEDLPYLPLLTDLLGELGTKNYSY-EELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKC 168 (248)
T ss_dssp EEEEEEEEE-TTS--CCCHCCHHHHHHHCCCS-BSSS-H-HHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEE
T ss_pred eEEEEEEecCCCCC-HHHHHhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEe
Confidence 99999999998665 356788888877666699999997 69999999987766555421 123556678
Q ss_pred ChhhHHHHHHHHHHhhhCCCCChHH
Q 006184 167 KREFLKGALMRFSQFFISPLMKVEA 191 (657)
Q Consensus 167 ~~~~l~~aL~~la~~~~~P~f~~~~ 191 (657)
..++++++++++.+++.+|.|+...
T Consensus 169 L~~~~~~~~~ll~eil~~~~f~d~~ 193 (248)
T PF08367_consen 169 LDEKLDEAFELLSEILTETDFDDKE 193 (248)
T ss_dssp EGGGHHHHHHHHHHHHHCB-TT-HH
T ss_pred HhhhHHHHHHHHHHHHhccCCCcHH
Confidence 8999999999999999999998864
No 26
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=95.97 E-value=0.29 Score=56.39 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=96.7
Q ss_pred CcccEEEEEEEcCCCch-hhhccHHHHHHHHhcCCCCC-----hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEE
Q 006184 319 KDVHILDLTWTLPCLHQ-EYLKKSEDYLAHLLGHEGRG-----SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSI 392 (657)
Q Consensus 319 ~~~~~l~i~f~~p~~~~-~~~~~~~~~l~~lLg~~~~~-----sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~ 392 (657)
.+...+.+.+..-...+ ....--..++.|++-.+... .+...+.+.|..++.+++.. ...+++
T Consensus 19 ~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d-----------~T~y~~ 87 (696)
T TIGR02110 19 AKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER-----------TTAFFF 87 (696)
T ss_pred CCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC-----------eEEEEE
Confidence 34445555665544222 11223457888888654322 35566667888766554332 344555
Q ss_pred EeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCC--CCCcc-cccccc
Q 006184 393 HLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI--YPAEH-VIYGEY 469 (657)
Q Consensus 393 ~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~--~~~~~-~l~~~~ 469 (657)
.+.+ ++.+++++.+.+.+ ..--++++++++-|+....++.... +++...+........+ .+... .+-...
T Consensus 88 ~v~~---~~l~~aL~lLaD~l---~~P~f~eeeierEr~vvl~Ei~~~~-ddp~~~~~~~l~~~l~~~HPy~~~~iGt~e 160 (696)
T TIGR02110 88 ELPA---AALAAGLARLCDML---ARPLLTAEDQQREREVLEAEYIAWQ-NDADTLREAALLDALQAGHPLRRFHAGSRD 160 (696)
T ss_pred EecH---HHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 6666 56776666544333 3345899999999999888877543 3455444433322221 11121 222233
Q ss_pred ccccC---CHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 470 MYEVW---DEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 470 ~i~~v---t~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
.+.++ +.++++++.++ +.++|+.++++|+-
T Consensus 161 sL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdv 194 (696)
T TIGR02110 161 SLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQ 194 (696)
T ss_pred HHhCcccchHHHHHHHHHHhcchhcEEEEEEeCC
Confidence 45544 49999999986 99999999999973
No 27
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=2.4 Score=44.36 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=116.6
Q ss_pred ceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCCh----h----HHHH------HHHhcCCccceeeCCCceEE
Q 006184 97 KKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDE----N----EYDS------YLSKHGGSSNAYTETEHTCY 162 (657)
Q Consensus 97 ~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~----~----~~~~------~l~~~gg~~na~t~~e~t~~ 162 (657)
....+.+.+.+=++.|++ =++.-+-.||.-|.+.|+.. . -|.+ |+..+-+....|++.--.++
T Consensus 263 EltHv~lg~Eg~~~~deD---~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfgi 339 (472)
T KOG2067|consen 263 ELTHVVLGFEGCSWNDED---FVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFGI 339 (472)
T ss_pred ceeeeeEeeccCCCCChh---HHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeEE
Confidence 477888888888888873 24555567777676666542 1 1222 34444466788888888999
Q ss_pred EEEeChhhHHHHHHHHHHhhhC--CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh
Q 006184 163 HFEIKREFLKGALMRFSQFFIS--PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI 240 (657)
Q Consensus 163 ~~~~~~~~l~~aL~~la~~~~~--P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~ 240 (657)
+.++++++..+++++++.-|.+ -..++++++|.|.++.+-+-+++.+-.-.+.+.-++.+-.+ -.+.+---.+.|.
T Consensus 340 ~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g--~rk~p~e~~~~Ie 417 (472)
T KOG2067|consen 340 YASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG--ERKPPDEFIKKIE 417 (472)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc--CcCCHHHHHHHHH
Confidence 9999999999999999887665 34899999999999999999999887777777777766322 1122222234555
Q ss_pred hhhhcCccHHHHHHHHHHhhccCCccEEEEEcCC
Q 006184 241 GAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGE 274 (657)
Q Consensus 241 ~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~ 274 (657)
+ ++.+|+.++-++.++. +-+++-.||.
T Consensus 418 ~------lt~~DI~rva~kvlt~-~p~va~~Gd~ 444 (472)
T KOG2067|consen 418 Q------LTPSDISRVASKVLTG-KPSVAAFGDG 444 (472)
T ss_pred h------cCHHHHHHHHHHHhcC-CceeccCCcc
Confidence 5 8889999998887653 3344444543
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=87.42 E-value=12 Score=33.87 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=70.2
Q ss_pred ecCcccEEEEEEEcCCCch-hhhccHHHHHHHHhcCCCCC----hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEE
Q 006184 317 AVKDVHILDLTWTLPCLHQ-EYLKKSEDYLAHLLGHEGRG----SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMS 391 (657)
Q Consensus 317 ~~~~~~~l~i~f~~p~~~~-~~~~~~~~~l~~lLg~~~~~----sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~ 391 (657)
+..+...+.+.|..-.... ....-...++.+++..+... .+...|.+.|..++..++.. ...++
T Consensus 8 ~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d-----------~t~~~ 76 (149)
T PF00675_consen 8 PGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRD-----------STSYS 76 (149)
T ss_dssp TTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESS-----------EEEEE
T ss_pred CCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEeccc-----------ceEEE
Confidence 3555566677776544332 22223457788888765322 26667778888886655422 45666
Q ss_pred EEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHH
Q 006184 392 IHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAA 450 (657)
Q Consensus 392 ~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~ 450 (657)
+.+.. ++.+++++.+.+.+. .-.++++++++.|.....+..... .++..++.
T Consensus 77 ~~~~~---~~~~~~l~~l~~~~~---~P~f~~~~~~~~r~~~~~ei~~~~-~~~~~~~~ 128 (149)
T PF00675_consen 77 ASVLS---EDLEKALELLADMLF---NPSFDEEEFEREREQILQEIEEIK-ENPQELAF 128 (149)
T ss_dssp EEEEG---GGHHHHHHHHHHHHH---SBGGCHHHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred EEEec---ccchhHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHH-CCHHHHHH
Confidence 67766 676766666554444 335899999999998887766543 34434443
No 29
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=18 Score=38.20 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=106.9
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHh------ccCCcCCCChhHHHHHHHhcCC------ccceeeCCCceEEEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHML------FMGSTEFPDENEYDSYLSKHGG------SSNAYTETEHTCYHFE 165 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehml------f~Gs~~~~~~~~~~~~l~~~gg------~~na~t~~e~t~~~~~ 165 (657)
.+.+++.|.+=++..|+. ++-++..-+ +.|.+..-+ ..+.+.+..+.+ ..-.|.+.---.+||-
T Consensus 270 ~a~~AiAVEG~~w~~pD~---~~l~van~iiG~wdr~~g~g~~~~-s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 270 LAHIAIAVEGVSWAHPDY---FALMVANTIIGNWDRTEGGGRNLS-SRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hhheeeeEecCCcCCccH---HHHHHHHHHhhhhhcccCCccCCc-cHHHHHHHHHHHHHHHhhhhcccccccceeEEEE
Confidence 889999998888888864 454444443 345444443 245555555432 1223344444566777
Q ss_pred e-ChhhHHHHHHHHHHhhh--CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCC-hhhhhh
Q 006184 166 I-KREFLKGALMRFSQFFI--SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGN-KKSLIG 241 (657)
Q Consensus 166 ~-~~~~l~~aL~~la~~~~--~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~-~etL~~ 241 (657)
+ ....++..+.....-.. .-..++.+++|.|+.++..+-..++.-.-.+.+.-++++..+.. -+++- .+.|..
T Consensus 346 ~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr---i~l~El~~rId~ 422 (467)
T KOG0960|consen 346 TDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR---IPLAELEARIDA 422 (467)
T ss_pred ecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc---CChHHHHHHHhh
Confidence 7 56666655544332221 12689999999999999999887776666677777777654422 22221 123334
Q ss_pred hhhcCccHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 242 AMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 242 ~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
++.++++++-.++.--....++.+|++.
T Consensus 423 ------vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 423 ------VTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred ------ccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 8999999999999998999999999865
No 30
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=71.45 E-value=2.1 Score=35.18 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=3.6
Q ss_pred CChHHHHHHH
Q 006184 117 QGLAHFLEHM 126 (657)
Q Consensus 117 ~Glah~lehm 126 (657)
|-+++..++|
T Consensus 44 p~fgea~~~~ 53 (101)
T PF09026_consen 44 PEFGEAMAYF 53 (101)
T ss_dssp --HHHHHHHH
T ss_pred hhHHHHHhhc
Confidence 3344444443
No 31
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=60.20 E-value=1e+02 Score=30.85 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=56.8
Q ss_pred EeecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHH-----HHHH-h-CCCcceeeeeeCCCCCCccccccE
Q 006184 315 LEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLH-----SFLK-G-RGWATSISAGVGDEGMHRSSIAYI 387 (657)
Q Consensus 315 ~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~-----~~LR-~-~Gl~ysv~a~~~~~~~~~~~~~g~ 387 (657)
..+.....++.+.|+++..... ...-+.+++.+||.-|.+.+- ..+. . -|+..++.+.......+ .....
T Consensus 85 ~~~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~--~~~~~ 161 (248)
T PF08367_consen 85 EQPTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDD--KYRPY 161 (248)
T ss_dssp E---TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTEC--CCEEE
T ss_pred EcCCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCcc--ceeEE
Confidence 3455667899999999875543 346678999999987766542 2232 2 23444444333221111 12347
Q ss_pred EEEEEEeCccccccHHHHHHHHHHHHHH
Q 006184 388 FVMSIHLTDSGLEKIFDIIGFVYQYIKL 415 (657)
Q Consensus 388 f~i~~~l~~~G~~~~~~v~~~v~~~l~~ 415 (657)
|.|++.+-. ++++++++.+.+.+..
T Consensus 162 l~is~k~L~---~~~~~~~~ll~eil~~ 186 (248)
T PF08367_consen 162 LVISAKCLD---EKLDEAFELLSEILTE 186 (248)
T ss_dssp EEEEEEEEG---GGHHHHHHHHHHHHHC
T ss_pred EEEEEEeHh---hhHHHHHHHHHHHHhc
Confidence 888998888 7899999888877754
No 32
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=57.24 E-value=2.7e+02 Score=29.75 Aligned_cols=163 Identities=12% Similarity=0.164 Sum_probs=91.0
Q ss_pred eecCcccEEEEEEEcCCCchhhhccH-HHHHHHHhcCCCCCh-HHHHHH---hCCCcceeeeeeCCCCCCccccccEEEE
Q 006184 316 EAVKDVHILDLTWTLPCLHQEYLKKS-EDYLAHLLGHEGRGS-LHSFLK---GRGWATSISAGVGDEGMHRSSIAYIFVM 390 (657)
Q Consensus 316 ~~~~~~~~l~i~f~~p~~~~~~~~~~-~~~l~~lLg~~~~~s-L~~~LR---~~Gl~ysv~a~~~~~~~~~~~~~g~f~i 390 (657)
+...+..++.+.|..-..+...+..- .++|...-|....++ =+...| .-|...+..+ . .. +|.+
T Consensus 38 e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~--t-----Re----~~~~ 106 (429)
T KOG2583|consen 38 EAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTA--T-----RE----LIGL 106 (429)
T ss_pred cCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeee--e-----cc----eEEE
Confidence 34456778999998876554433222 234444444333222 223333 3343333221 1 22 8899
Q ss_pred EEEeCccccccHHHHHHHHHHHHHHHHhc-CCchHHHHHHH-HHHHhhhhhccCCChhHHHHHHHHh-cCCCCCcccccc
Q 006184 391 SIHLTDSGLEKIFDIIGFVYQYIKLLRQV-SPQKWIFKELQ-DIGNMEFRFAEEQPQDDYAAELAGN-LLIYPAEHVIYG 467 (657)
Q Consensus 391 ~~~l~~~G~~~~~~v~~~v~~~l~~L~~~-~i~e~el~~~k-~~~~~~f~~~~~~~~~~~~~~la~~-l~~~~~~~~l~~ 467 (657)
++++.. ++.+-.+. .|..+... .+-+||+++.. ..+..+..++ .+...+...... ....+...-+..
T Consensus 107 tvt~lr---d~~~~~l~----~L~~V~~~paFkPwEl~D~~~~ti~~~l~~~---t~~~~a~e~lH~aAfRngLgnslY~ 176 (429)
T KOG2583|consen 107 TVTFLR---DDLEYYLS----LLGDVLDAPAFKPWELEDVVLATIDADLAYQ---TPYTIAIEQLHAAAFRNGLGNSLYS 176 (429)
T ss_pred EEEEec---ccHHHHHH----HHHHhhcccCcCchhhhhhhhhhhHHHhhhc---ChHHHHHHHHHHHHHhcccCCcccC
Confidence 999988 55554444 44454444 68899999887 5555544333 233332221111 111133333333
Q ss_pred -ccccccCCHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 468 -EYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 468 -~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
...+.+++.+++..++++ +...|+.++-++..
T Consensus 177 p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd 210 (429)
T KOG2583|consen 177 PGYQVGSVSSSELKDFAAKHFVKGNAVLVGVNVD 210 (429)
T ss_pred CcccccCccHHHHHHHHHHHhhccceEEEecCCC
Confidence 256899999999999986 99999988877765
No 33
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=52.39 E-value=44 Score=24.36 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhh
Q 006184 133 EFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (657)
Q Consensus 133 ~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~ 182 (657)
.|+....+..+|+++|+.+--....+.-.+.+.++.+..+...+.+.++.
T Consensus 4 ~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t 53 (56)
T PF09186_consen 4 DYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLT 53 (56)
T ss_dssp -CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHc
Confidence 46777889999999999997777777799999999999999998888764
No 34
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.27 E-value=6.8 Score=45.09 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=3.2
Q ss_pred CChHHHHH
Q 006184 117 QGLAHFLE 124 (657)
Q Consensus 117 ~Glah~le 124 (657)
+|=..|.+
T Consensus 1466 ~~D~df~~ 1473 (1516)
T KOG1832|consen 1466 LIDGDFME 1473 (1516)
T ss_pred CCChHHHH
Confidence 33334433
No 35
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=41.46 E-value=28 Score=31.94 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 473 VWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 473 ~vt~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
++|.++++++.++ +.|.|+.++++|+-
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~ 28 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDI 28 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCc
Confidence 4789999999986 99999999999974
No 36
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=38.51 E-value=44 Score=34.52 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=8.0
Q ss_pred cceEEEEEEeccc
Q 006184 96 TKKAAAAMCVGMG 108 (657)
Q Consensus 96 ~~~~~~~l~v~~G 108 (657)
+..+.+|.+-++-
T Consensus 303 t~nvVvCqyDKV~ 315 (348)
T KOG2652|consen 303 TQNVVVCQYDKVN 315 (348)
T ss_pred cceeEEEeeeeec
Confidence 3466777766654
No 37
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=37.14 E-value=1.2e+02 Score=27.31 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=42.3
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
++.+.|-++||+......... . . ..+.+|++|.+-.+++...+.+.+..-.-.++++++++...+.+.
T Consensus 73 r~l~~Le~~GlI~R~~~~~Dr----R-----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L~ 140 (144)
T PRK11512 73 RMLDRLVCKGWVERLPNPNDK----R-----G--VLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLK 140 (144)
T ss_pred HHHHHHHHCCCEEeccCcccC----C-----e--eEeEEChhHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455677799999976442211 1 2 455778888766666555554333322246899998888876654
No 38
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=36.21 E-value=30 Score=37.16 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=4.7
Q ss_pred CCEEEEEe
Q 006184 32 RLCALLVH 39 (657)
Q Consensus 32 Gl~v~l~~ 39 (657)
|...+.++
T Consensus 183 GvEfVCCP 190 (615)
T KOG3540|consen 183 GVEFVCCP 190 (615)
T ss_pred CceEEeCC
Confidence 55556666
No 39
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=33.90 E-value=1.5e+02 Score=26.57 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=45.6
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
++...|.++||+......... =...+.+|++|.+...++.....+..+.+ -.++++++.+.....+..
T Consensus 65 ~~v~~Le~~GlV~r~~~~~Dr-----------R~~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~ee~~~l~~~l~~ 132 (144)
T PRK03573 65 RTLDQLEEKGLISRQTCASDR-----------RAKRIKLTEKAEPLISEVEAVINKTRAEI-LHGISAEEIEQLITLIAK 132 (144)
T ss_pred HHHHHHHHCCCEeeecCCCCc-----------CeeeeEEChHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Confidence 355667789999976442221 12466788999777777766666666665 458999888887765543
No 40
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=31.49 E-value=31 Score=35.74 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=41.0
Q ss_pred eEEEEEEecccCC---CCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCcc
Q 006184 98 KAAAAMCVGMGSF---CDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSS 151 (657)
Q Consensus 98 ~~~~~l~v~~Gs~---~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~ 151 (657)
.+.+--.|++||. .|+-...| |-+..=||.||.|||+.....+-+...|..+
T Consensus 56 ~IEII~~VgGGs~~~~~~~~~i~~--~~~~sRl~~Gtg~y~s~~~~~~a~~asg~e~ 110 (326)
T PRK11840 56 ELEIVHFVGGGSDLVADDSWTVAG--KTFSSRLLVGTGKYKDFEETAAAVEASGAEI 110 (326)
T ss_pred EEEEEEEecCCCCCCCCCCeEECC--EEEecceeEecCCCCCHHHHHHHHHHhCCCE
Confidence 8888889999999 66655556 4455567899999999888888888887653
No 41
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein. Members of this protein family are found on the main chromosomes of a number of the Gammaproteobacteria; this model excludes related plasmid proteins, which score between trusted and noise cutoffs. This protein, DNA replication terminus site-binding protein, binds specific DNA sites near the replication terminus to arrest the DNA replication fork.
Probab=29.12 E-value=3.6e+02 Score=27.62 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCC-CCCCCChhhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccc
Q 006184 227 AFN-KFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANV 290 (657)
Q Consensus 227 p~~-~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~i 290 (657)
|.+ ||+|.|+..+++ ++++++.+--++-+.+++.+- .++-++-..++++-..+|
T Consensus 156 p~SvRFgWanK~iIk~------~tk~evL~~L~ksl~~~r~v~----p~~~eqW~~~l~~Ei~~I 210 (300)
T TIGR02648 156 PASVRFGWANKHIIKN------VTRDEILAQLEKSLNSGRAVA----PYTREQWQELVEREIQDI 210 (300)
T ss_pred CCeeeeecccchhhhh------cCHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHH
Confidence 443 799999999998 999999999999998777654 456677666666655444
No 42
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=27.30 E-value=38 Score=38.93 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=9.2
Q ss_pred ceecceeeeecCChHHHH
Q 006184 510 PWFGSRYTEEDISPSLME 527 (657)
Q Consensus 510 ~~y~~~Y~~~~i~~~~~~ 527 (657)
+.|.-++.+..+..-+++
T Consensus 512 ~~F~~P~~L~~La~~L~~ 529 (622)
T PF02724_consen 512 ELFSHPLALTKLALFLLD 529 (622)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 355555655555543333
No 43
>PRK10870 transcriptional repressor MprA; Provisional
Probab=25.35 E-value=2.3e+02 Score=26.64 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
++...|-++||+......... . . ..+.+|++|.+-++++.....+.+..+ -.++++++.+.+.+.+.
T Consensus 90 r~v~rLe~kGlV~R~~~~~Dr----R-----~--~~v~LT~~G~~~~~~i~~~~~~~~~~~-~~~ls~~e~~~l~~~L~ 156 (176)
T PRK10870 90 RIADELEKRGWIERRESDNDR----R-----C--LHLQLTEKGHEFLREVLPPQHNCLHQL-WSALSTTEKDQLEQITR 156 (176)
T ss_pred HHHHHHHHCCCEEecCCCCCC----C-----e--eEEEECHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Confidence 455677799999875432211 1 2 456788999888888888777777776 45789988887766544
No 44
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=43 Score=40.20 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCchH-HHHHHHHHHHhhhh
Q 006184 400 EKIFDIIGFVYQYIKLLRQVSPQKW-IFKELQDIGNMEFR 438 (657)
Q Consensus 400 ~~~~~v~~~v~~~l~~L~~~~i~e~-el~~~k~~~~~~f~ 438 (657)
.++.-|.+++|..|..+.+.++-.. .+++.+......|.
T Consensus 2142 ~~VAlVadA~fhfik~~~eqpie~k~lid~~ed~e~~~f~ 2181 (3015)
T KOG0943|consen 2142 KHVALVADALFHFIKAMNEQPIEDKPLIDRKEDRELLEFG 2181 (3015)
T ss_pred hHHHHHHHHHHHHHHhcccCccccchhhhhhhhHHHHHhc
Confidence 5677777888888887776665433 34444444444444
No 45
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.19 E-value=1.1e+02 Score=29.28 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=36.0
Q ss_pred hhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHH
Q 006184 239 LIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVV 284 (657)
Q Consensus 239 L~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~ 284 (657)
|......|.++.++|.++.+. .|..+.||++|.-.+++|.+++.
T Consensus 124 i~~Al~~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 124 LTYALKYGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred hhHHHHCCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 333445666899999999975 89999999999999999888764
No 46
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=22.05 E-value=1.2e+02 Score=34.31 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=6.8
Q ss_pred cCCCEEEEEeCC
Q 006184 30 ENRLCALLVHDP 41 (657)
Q Consensus 30 ~NGl~v~l~~~~ 41 (657)
+.||++.+-+..
T Consensus 874 DSaltItVNPme 885 (952)
T KOG1834|consen 874 DSALTITVNPME 885 (952)
T ss_pred cccceEEecchH
Confidence 356666665543
No 47
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.22 E-value=3e+02 Score=19.91 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhh
Q 006184 139 EYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFF 182 (657)
Q Consensus 139 ~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~ 182 (657)
.+-+.|.++|......+.. ...++|.++.++.+.++..+...|
T Consensus 19 ~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 19 KMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 4667788888888777654 478899999999999999888766
No 48
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=21.06 E-value=53 Score=35.18 Aligned_cols=10 Identities=0% Similarity=-0.117 Sum_probs=5.0
Q ss_pred eEEEEEEecc
Q 006184 98 KAAAAMCVGM 107 (657)
Q Consensus 98 ~~~~~l~v~~ 107 (657)
.+.+|++-+|
T Consensus 332 ~~~~c~~~kv 341 (375)
T PF03153_consen 332 NVVLCQYDKV 341 (375)
T ss_dssp -EEEEEEEEE
T ss_pred CEEEEEeecc
Confidence 5566665544
No 49
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=20.36 E-value=3.3e+02 Score=20.02 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCccceee-CCCceEEEEEeChhhHHHHHHHHHHhhh
Q 006184 139 EYDSYLSKHGGSSNAYT-ETEHTCYHFEIKREFLKGALMRFSQFFI 183 (657)
Q Consensus 139 ~~~~~l~~~gg~~na~t-~~e~t~~~~~~~~~~l~~aL~~la~~~~ 183 (657)
.+-+.|.++|......+ +....++.|.+..++.+.++..+.+.|.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 56677888888775443 2245899999999999999999888775
Done!