Query 006184
Match_columns 657
No_of_seqs 354 out of 2095
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 18:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 2.6E-79 9E-84 732.0 60.6 568 10-647 7-584 (939)
2 3cww_A Insulysin, insulin-degr 100.0 4.8E-78 1.6E-82 724.8 63.4 579 4-647 15-603 (990)
3 3eoq_A Putative zinc protease; 100.0 3.9E-58 1.3E-62 497.5 42.1 400 24-499 2-404 (406)
4 3ami_A Zinc peptidase; alpha/b 100.0 3E-57 1E-61 496.6 46.7 411 22-500 5-423 (445)
5 3hdi_A Processing protease; CA 100.0 1.1E-55 3.9E-60 480.3 42.9 400 24-499 2-404 (421)
6 1pp9_A Ubiquinol-cytochrome C 100.0 3.7E-53 1.3E-57 464.2 45.1 408 20-499 10-428 (446)
7 2fge_A Atprep2;, zinc metallop 100.0 7.1E-55 2.4E-59 523.5 33.8 527 15-631 29-612 (995)
8 1hr6_B Beta-MPP, mitochondrial 100.0 3E-52 1E-56 456.4 45.2 408 22-499 5-428 (443)
9 3amj_B Zinc peptidase inactive 100.0 1.1E-51 3.8E-56 449.1 42.7 403 23-500 3-415 (424)
10 3gwb_A Peptidase M16 inactive 100.0 6.2E-51 2.1E-55 444.5 43.2 410 17-500 7-422 (434)
11 1hr6_A Alpha-MPP, mitochondria 100.0 4E-51 1.4E-55 451.7 42.1 403 21-499 3-437 (475)
12 1pp9_B Ubiquinol-cytochrome C 100.0 9.9E-49 3.4E-53 427.7 43.0 402 19-499 19-430 (439)
13 3d3y_A Uncharacterized protein 100.0 1.9E-48 6.3E-53 423.4 39.4 396 27-498 6-421 (425)
14 3cx5_A Cytochrome B-C1 complex 100.0 8.5E-48 2.9E-52 419.1 37.6 395 25-499 2-413 (431)
15 3s5m_A Falcilysin; M16 metallo 100.0 3.3E-47 1.1E-51 452.8 37.1 415 17-499 80-587 (1193)
16 3go9_A Insulinase family prote 100.0 4.8E-47 1.6E-51 420.1 31.3 400 21-499 23-447 (492)
17 3cx5_B Cytochrome B-C1 complex 100.0 8.6E-38 2.9E-42 331.2 28.9 329 98-499 12-343 (352)
18 2fge_A Atprep2;, zinc metallop 100.0 6.2E-28 2.1E-32 289.6 30.3 370 98-499 574-975 (995)
19 1q2l_A Protease III; hydrolase 100.0 4.7E-27 1.6E-31 280.5 31.2 368 98-499 524-906 (939)
20 3cww_A Insulysin, insulin-degr 99.9 7.4E-24 2.5E-28 254.2 29.7 372 98-499 542-933 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 4.7E-22 1.6E-26 237.0 19.9 379 98-499 739-1173(1193)
22 3ih6_A Putative zinc protease; 99.7 1.5E-17 5.1E-22 160.5 16.1 180 310-499 13-194 (197)
23 3ih6_A Putative zinc protease; 97.8 0.00036 1.2E-08 66.1 15.0 161 98-274 24-194 (197)
24 3hdi_A Processing protease; CA 97.5 0.00089 3E-08 71.4 14.1 162 98-275 234-405 (421)
25 3eoq_A Putative zinc protease; 97.4 0.0013 4.6E-08 69.6 13.7 161 98-274 235-404 (406)
26 3cx5_A Cytochrome B-C1 complex 97.3 0.0027 9.3E-08 67.6 15.4 166 98-275 232-414 (431)
27 3gwb_A Peptidase M16 inactive 97.3 0.0029 1E-07 67.4 14.8 165 98-275 249-422 (434)
28 1hr6_B Beta-MPP, mitochondrial 97.2 0.0074 2.5E-07 64.5 17.3 167 98-275 246-429 (443)
29 3amj_B Zinc peptidase inactive 97.2 0.0056 1.9E-07 65.0 15.6 164 98-275 242-415 (424)
30 1hr6_A Alpha-MPP, mitochondria 97.1 0.0052 1.8E-07 66.6 14.5 166 98-274 243-437 (475)
31 1pp9_A Ubiquinol-cytochrome C 97.0 0.009 3.1E-07 64.0 15.8 165 98-275 250-429 (446)
32 3cx5_B Cytochrome B-C1 complex 96.9 0.02 6.8E-07 59.0 16.3 157 321-497 12-175 (352)
33 1pp9_B Ubiquinol-cytochrome C 96.8 0.026 8.7E-07 60.1 16.9 160 321-498 44-211 (439)
34 3ami_A Zinc peptidase; alpha/b 96.6 0.053 1.8E-06 57.9 17.6 172 310-498 15-197 (445)
35 3d3y_A Uncharacterized protein 96.1 0.075 2.6E-06 56.0 15.2 159 98-273 254-421 (425)
36 3go9_A Insulinase family prote 93.6 0.91 3.1E-05 49.1 14.9 172 98-286 266-461 (492)
37 4aik_A Transcriptional regulat 37.9 1.1E+02 0.0036 26.5 8.0 66 356-433 65-130 (151)
38 2nnn_A Probable transcriptiona 28.1 1.5E+02 0.0052 24.5 7.3 66 357-434 72-137 (140)
39 3deu_A Transcriptional regulat 27.5 1.3E+02 0.0044 26.3 6.9 66 357-434 88-153 (166)
40 1g6u_A Domain swapped dimer; d 27.3 1.3E+02 0.0044 19.5 4.6 25 406-430 2-26 (48)
41 3bpv_A Transcriptional regulat 27.3 1.7E+02 0.0059 24.1 7.4 67 357-435 63-129 (138)
42 3k0l_A Repressor protein; heli 26.9 1.6E+02 0.0055 25.3 7.4 68 356-435 79-146 (162)
43 3eco_A MEPR; mutlidrug efflux 26.6 1.3E+02 0.0045 25.0 6.5 66 357-434 67-132 (139)
44 3bro_A Transcriptional regulat 25.9 2E+02 0.007 23.7 7.7 67 357-435 70-136 (141)
45 3hsr_A HTH-type transcriptiona 25.8 84 0.0029 26.4 5.1 64 357-434 70-133 (140)
46 3s2w_A Transcriptional regulat 25.4 1.7E+02 0.0059 25.0 7.3 67 356-434 83-149 (159)
47 3oop_A LIN2960 protein; protei 25.1 1.5E+02 0.005 24.9 6.6 66 357-434 71-136 (143)
48 3e6m_A MARR family transcripti 24.2 1.5E+02 0.0051 25.5 6.6 67 357-435 87-153 (161)
49 1okr_A MECI, methicillin resis 22.8 1.9E+02 0.0065 23.5 6.7 65 357-434 48-121 (123)
50 3bja_A Transcriptional regulat 22.7 2.4E+02 0.0081 23.1 7.5 66 357-434 67-132 (139)
51 2nyx_A Probable transcriptiona 22.5 2E+02 0.007 24.9 7.2 67 357-435 79-145 (168)
52 2hr3_A Probable transcriptiona 22.5 1.3E+02 0.0045 25.2 5.8 67 357-434 70-136 (147)
53 3fm5_A Transcriptional regulat 21.7 1.2E+02 0.0042 25.7 5.4 67 357-435 74-140 (150)
54 3nqo_A MARR-family transcripti 21.3 2.2E+02 0.0077 25.3 7.4 67 357-435 77-143 (189)
55 1lj9_A Transcriptional regulat 21.2 2.5E+02 0.0087 23.2 7.4 67 357-435 63-129 (144)
56 2eth_A Transcriptional regulat 21.1 2.4E+02 0.0084 23.8 7.3 67 357-435 78-144 (154)
57 2fbi_A Probable transcriptiona 21.0 1.5E+02 0.0051 24.6 5.8 66 357-434 70-135 (142)
58 2rdp_A Putative transcriptiona 20.7 1.9E+02 0.0064 24.3 6.4 67 357-435 76-142 (150)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.6e-79 Score=732.03 Aligned_cols=568 Identities=27% Similarity=0.447 Sum_probs=507.6
Q ss_pred CCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcc
Q 006184 10 SDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKG 89 (657)
Q Consensus 10 ~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (657)
....|+||+.|.+.|+.++|+|||+|++++++.. +
T Consensus 7 ~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~------~--------------------------------------- 41 (939)
T 1q2l_A 7 IQETIRKSDKDNRQYQAIRLDNGMVVLLVSDPQA------V--------------------------------------- 41 (939)
T ss_dssp CCSCCCCCTTCCCEEEEEEETTSCEEEEEECTTC------S---------------------------------------
T ss_pred ccccCcCCCCCCcceEEEEecCCCEEEEEECCCC------C---------------------------------------
Confidence 4457999999999999999999999999999988 7
Q ss_pred cccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChh
Q 006184 90 KGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKRE 169 (657)
Q Consensus 90 ~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~ 169 (657)
.++++++|++||++||.+.+|+|||||||+|+||++||.++++.++++++||++||+|+.++|+|+++++++
T Consensus 42 --------~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~ 113 (939)
T 1q2l_A 42 --------KSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVEND 113 (939)
T ss_dssp --------SEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGG
T ss_pred --------ceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHH
Confidence 899999999999999999999999999999999999997679999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccH
Q 006184 170 FLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINL 249 (657)
Q Consensus 170 ~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~ 249 (657)
+|+.+|++|++++.+|.|+++++++|+.+|.+|++.+.++|.+++.+.+..++|++|||+++.+|+.++|.+ ..+.++
T Consensus 114 ~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~--~~~~~~ 191 (939)
T 1q2l_A 114 ALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSD--KPGNPV 191 (939)
T ss_dssp GHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSC--BTTBCH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhc--CCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985 234479
Q ss_pred HHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEeecCcccEEEE
Q 006184 250 QEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAVKDVHILDL 326 (657)
Q Consensus 250 ~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i 326 (657)
+++|++||++||+|+||+|||+|++++++++++|+++|++||++..+.+... .+++. .+..+...+..+++.+.+
T Consensus 192 ~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i 269 (939)
T 1q2l_A 192 QQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEIT--VPVVTDAQKGIIIHYVPALPRKVLRV 269 (939)
T ss_dssp HHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCC--SCSCCGGGSSEEEEECCSSCCCEEEE
T ss_pred HHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCC--CCCCCHHHcCEEEEEEeCCCCcEEEE
Confidence 9999999999999999999999999999999999999999998654433221 12221 234555567778899999
Q ss_pred EEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHH
Q 006184 327 TWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDII 406 (657)
Q Consensus 327 ~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~ 406 (657)
+|++|.....++..++.+++++||+++.|+|++.||++||+|+++++..... ..+.|.|.|++.++++|.+++++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~---~~~~g~f~i~~~~~~~~~~~~~~~~ 346 (939)
T 1q2l_A 270 EFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIV---NGNSGVLAISASLTDKGLANRDQVV 346 (939)
T ss_dssp EEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESST---TSSEEEEEEEEEECHHHHHTHHHHH
T ss_pred EEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeecccccc---CCCceEEEEEEEEChhhhhhHHHHH
Confidence 9999987766677899999999999999999999999999999998753211 1245699999999998878999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhc
Q 006184 407 GFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFF 486 (657)
Q Consensus 407 ~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l 486 (657)
+.++++|+++++.|+++++++++|+.+..+|.+....++..++..++.++..+++++++.+...++++|+++|++++++|
T Consensus 347 ~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l 426 (939)
T 1q2l_A 347 AAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMM 426 (939)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHHhc
Confidence 99999999999999999999999999999998877567788999999888877777777777889999999999999999
Q ss_pred CcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCccccccccCCCCcCC
Q 006184 487 MPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTV 566 (657)
Q Consensus 487 ~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~~~~~~~~ 566 (657)
.++++++++++|. ...+.+++||||+|.+.+++.++++.|..... ...+++|.+|+|||++|++...... .
T Consensus 427 ~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~n~~~~~~~~~~~~~~~-----~ 497 (939)
T 1q2l_A 427 TPQNARIWYISPK---EPHNKTAYFVDAPYQVDKISAQTFADWQKKAA-DIALSLPELNPYIPDDFSLIKSEKK-----Y 497 (939)
T ss_dssp SGGGCEEEEECTT---CCCCEECTTTCCEEEEEECCHHHHHHHHHHHH-TCCCCCCCCCTTCCCCCCCCCCSSC-----C
T ss_pred CHHHcEEEEEcCC---CCCCcccceeCCeeeeeeCCHHHHHHHhccCc-cccccCCCCCcCCCcCcccccCcCC-----C
Confidence 9999999999996 45678899999999999999999999987543 5679999999999999998754322 2
Q ss_pred CCCeEEecCCCcEEEEecCCccCCc-eeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC------cccccC
Q 006184 567 TSPTCIIDEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS------RLSFIK 639 (657)
Q Consensus 567 ~~P~~~~~~~~~~~w~k~d~~F~~P-k~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~------~~~~~~ 639 (657)
..|.++..++++++||++|+.|++| ++.|.+.+.+|....++.+..++.|+..++.+.+.++.|++. +++. .
T Consensus 498 ~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~ 576 (939)
T 1q2l_A 498 DHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-N 576 (939)
T ss_dssp SSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-S
T ss_pred CCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-C
Confidence 3799999999999999999999996 999999999999999999999999999999999999988888 6666 7
Q ss_pred CCeEEehh
Q 006184 640 NEILLLPK 647 (657)
Q Consensus 640 ~gi~~~~~ 647 (657)
.|+.+.+.
T Consensus 577 ~g~~~~~~ 584 (939)
T 1q2l_A 577 NGLMVNAN 584 (939)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 88877653
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4.8e-78 Score=724.79 Aligned_cols=579 Identities=39% Similarity=0.683 Sum_probs=515.7
Q ss_pred CCCcccCCCccccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccch
Q 006184 4 NGCVWSSDEIVIKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDT 83 (657)
Q Consensus 4 ~~~~~~~~~~i~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (657)
+.++......|+||..|++.|+.++|+|||+|++++++.. +
T Consensus 15 ~~~~~~~~~~~~~~~~d~~~~~~~~L~NGl~v~~~~~~~~------~--------------------------------- 55 (990)
T 3cww_A 15 NPAIKRIGNHITKSPEDKREYRGLELANGIKVLLISDPTT------D--------------------------------- 55 (990)
T ss_dssp CTTEEEECSCCCCCTTCCCEEEEEEETTCCEEEEEECTTC------S---------------------------------
T ss_pred CccccccCCcccCCCCCCcceEEEEeCCCCEEEEEECCCC------C---------------------------------
Confidence 4455556678999999999999999999999999999988 7
Q ss_pred hhhhcccccccccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEE
Q 006184 84 EKEVKGKGIFSQTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYH 163 (657)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~ 163 (657)
+++++++|++||+.||.+.+|+|||||||+|+||++||.+++|.++++++||.+||+|+.++|+|+
T Consensus 56 --------------~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~ 121 (990)
T 3cww_A 56 --------------KSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYY 121 (990)
T ss_dssp --------------EEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEE
T ss_pred --------------cEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEE
Confidence 999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred EEeChhhHHHHHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhh-h
Q 006184 164 FEIKREFLKGALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIG-A 242 (657)
Q Consensus 164 ~~~~~~~l~~aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~-~ 242 (657)
+++++++|+.+|+++++++.+|.|+++++++|+.+|.+|++.+.++|.+++.+.+..+++++|||+++.+|+.++|.. |
T Consensus 122 ~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~ 201 (990)
T 3cww_A 122 FDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRP 201 (990)
T ss_dssp EEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHH
T ss_pred EEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred hhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccc---cceEEEEeecC
Q 006184 243 MEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK---ACKLFRLEAVK 319 (657)
Q Consensus 243 ~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 319 (657)
..+++.++++|++||++||+|+||+|+|+|++++++++++|+++|+.||++..+.+.+. .+++. .+..+...+..
T Consensus 202 ~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 279 (990)
T 3cww_A 202 NQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFP--EHPFQEEHLKQLYKIVPIK 279 (990)
T ss_dssp HHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCC--SCSSCGGGSSEEEEECCSS
T ss_pred ccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCC--CCCCChHHcCeEEEEEECC
Confidence 33333499999999999999999999999999999999999999999998754433321 12221 23455556667
Q ss_pred cccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCcccc
Q 006184 320 DVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGL 399 (657)
Q Consensus 320 ~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~ 399 (657)
+++.+.++|++|.....++..++.+++++||+++.++|++.||++||+|+++++...... +.|.|.|++.+++.|.
T Consensus 280 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~----~~~~f~i~~~~~~~g~ 355 (990)
T 3cww_A 280 DIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGAR----GFMFFIINVDLTEEGL 355 (990)
T ss_dssp SCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEET----TEEEEEEEEECCHHHH
T ss_pred CCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCCC----CccEEEEEEEEChHHh
Confidence 789999999999977666778999999999998999999999999999999987654222 2469999999998787
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHH
Q 006184 400 EKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMI 479 (657)
Q Consensus 400 ~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI 479 (657)
++++++++.++++|+.|++.|++++++++++......|.+....++..++..++..+..+++++++.+...+.++|+++|
T Consensus 356 ~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i 435 (990)
T 3cww_A 356 LHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLI 435 (990)
T ss_dssp HTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHH
Confidence 79999999999999999999999999999999888888887666788888889888888888888877788999999999
Q ss_pred HHHHhhcCcCceEEEEEeCCCCCCCCccccceecceeeeecCChHHHHhhcCCCCCCCcCCCCCCCCCCCCCcccccccc
Q 006184 480 KHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDI 559 (657)
Q Consensus 480 ~~~~~~l~~~n~~i~iv~~~~~~~~~~~~e~~y~~~Y~~~~i~~~~~~~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~ 559 (657)
++++++|.++++++++++|.+ ....+..|+||+++|.+.++++++++.|.+... .+.+.+|.+|+|||+||++.....
T Consensus 436 ~~~~~~l~~~~~~~~~~~p~~-~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~ip~~~~~~~~~~ 513 (990)
T 3cww_A 436 EMVLDKLRPENVRVAIVSKSF-EGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAAL-NGKFKLPTKNEFIPTNFEILPLEA 513 (990)
T ss_dssp HHHHTTCSGGGCEEEEECGGG-TTCCCEECTTTCCEEEEEECCHHHHHHHHTCCC-CTTCCCCCCCTTCCCCCCCCCCCT
T ss_pred HHHHHhcCHhHEEEEEEcCCC-CCCcCcccceeCceeeeecCCHHHHHHhhcCCC-CccccCCCCCCCCCcccccccCCC
Confidence 999999999999999999988 677889999999999999999999999999765 456999999999999999876442
Q ss_pred CCCCcCCCCCeEEecCCCcEEEEecCCccCCceeeEEEEEecCCCcCCHHHHHHHHHHHHHHHHHhhhhccccC------
Q 006184 560 SNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQVS------ 633 (657)
Q Consensus 560 ~~~~~~~~~P~~~~~~~~~~~w~k~d~~F~~Pk~~i~~~~~~p~~~~s~~~~~~~~l~~~~~~~~l~e~~Y~a~------ 633 (657)
.. ...|.++...+++++||++|++|++|++.+++.+.+|....++++..++.||..++.+.+++..|++.
T Consensus 514 ~~----~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~ 589 (990)
T 3cww_A 514 AA----TPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSY 589 (990)
T ss_dssp TC----CSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred CC----CCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEE
Confidence 21 22789999999999999999999999999999999999888999999999999999999999999887
Q ss_pred cccccCCCeEEehh
Q 006184 634 RLSFIKNEILLLPK 647 (657)
Q Consensus 634 ~~~~~~~gi~~~~~ 647 (657)
+++.+.+|+.+.++
T Consensus 590 ~~~~~~~~~~~~~~ 603 (990)
T 3cww_A 590 DLQNTIYGMYLSVK 603 (990)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEcCCeEEEEEE
Confidence 66677788887764
No 3
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=3.9e-58 Score=497.48 Aligned_cols=400 Identities=20% Similarity=0.206 Sum_probs=351.5
Q ss_pred ceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEEE
Q 006184 24 YRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAM 103 (657)
Q Consensus 24 y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (657)
++..+|+|||+|++++++.. + .+++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~~~~~l 28 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGA------R-----------------------------------------------SVALGY 28 (406)
T ss_dssp EEEEECTTSCEEEEEECTTC------S-----------------------------------------------CEEEEE
T ss_pred ceeEEcCCCCEEEEEECCCC------C-----------------------------------------------eEEEEE
Confidence 57899999999999999987 6 999999
Q ss_pred EecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhhh
Q 006184 104 CVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFI 183 (657)
Q Consensus 104 ~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~~ 183 (657)
++++||.+||.+.+|+|||+|||+|+||++|+. .++.++++.+||++||+|+.++|+|++++++++++.+|+++++++
T Consensus 29 ~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~- 106 (406)
T 3eoq_A 29 FVKTGARDETKEESGVSHFLEHMVFKGPEDMDA-LAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL- 106 (406)
T ss_dssp EESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCH-HHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-
T ss_pred EEccccCCCCCCCCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999987 799999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhccC
Q 006184 184 SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQG 263 (657)
Q Consensus 184 ~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~ 263 (657)
+|.|+++++++|+..+.+|+++..++|.+++.+.+...+|++|||+++..|+.++|.+ +++++|++||++||+|
T Consensus 107 ~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~------~t~~~l~~f~~~~y~p 180 (406)
T 3eoq_A 107 RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA------LTREGMAAYHRRRYLP 180 (406)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH------CCHHHHHHHHHHHCCG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------CCHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecC-cccEEEEEEEcCCCchhhhccHH
Q 006184 264 GLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVK-DVHILDLTWTLPCLHQEYLKKSE 342 (657)
Q Consensus 264 ~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~f~~p~~~~~~~~~~~ 342 (657)
+||+|+|+|++++++++++|+++|+.|+.+..+.+ . + +....+..+.+.... .+..+.++|+.|.... .+..++
T Consensus 181 ~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~-~d~~~l 255 (406)
T 3eoq_A 181 KNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-Y--P-PLTPAFGVEERPYEKARALYLVALFPGVAYQE-EARFPG 255 (406)
T ss_dssp GGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-C--C-CCCCCCEEEEEECTTCSSEEEEEEEECCCTTC-TTHHHH
T ss_pred cCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-C--C-CCCCCCceEEEecCCccceEEEEEecCCCCCC-chHHHH
Confidence 99999999999999999999999999987543222 1 1 111133334443334 7889999999887543 356899
Q ss_pred HHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCc
Q 006184 343 DYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQ 422 (657)
Q Consensus 343 ~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~ 422 (657)
.+++.+||++..++|++.||++||+|+++++.... .+.|.|.|++.+.+ ++++++++.+.++|+.+++.|++
T Consensus 256 ~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t 327 (406)
T 3eoq_A 256 QVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEA-----DRAGTFHAYVQADP---ARKGEVLAVLQEELDRLGREGVG 327 (406)
T ss_dssp HHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEEC-----SSCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCCCcchHHHHHHHHcCCeeEEEEEeccc-----CCceEEEEEEEeCc---chHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999988999999999999999999876542 24569999999998 78999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCC-CCCccccccccccccCCHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 423 KWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 423 e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~-~~~~~~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
++|++++|+.+..++....+ ++...+..++..... .++..+......++++|+++|++++++ |.++++ ++++||.
T Consensus 328 ~~el~~ak~~l~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 328 EEEVERAKTPLATGLVFAGE-TPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCcccE-EEEECCC
Confidence 99999999999999877654 466777777765443 334444445567999999999999997 788888 9999985
No 4
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=3e-57 Score=496.56 Aligned_cols=411 Identities=13% Similarity=0.144 Sum_probs=357.9
Q ss_pred ccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEE
Q 006184 22 RLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAA 101 (657)
Q Consensus 22 ~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (657)
..++.++|+|||+|++++++.. + .+.+
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~v~~ 31 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRA------P-----------------------------------------------TLVH 31 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTS------S-----------------------------------------------EEEE
T ss_pred cCcEEEECCCCCEEEEEECCCC------C-----------------------------------------------eEEE
Confidence 4688999999999999999877 6 9999
Q ss_pred EEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHh
Q 006184 102 AMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQF 181 (657)
Q Consensus 102 ~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~ 181 (657)
++.+++|+..||.+..|+|||+|||+|.||++||. .++.++++++||++||+|+.++|+|++++++++++.+|++++++
T Consensus 32 ~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~-~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~ 110 (445)
T 3ami_A 32 MVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGP-GEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADR 110 (445)
T ss_dssp EEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCH-HHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhh
Q 006184 182 FISPLMKVEAMEREVLAVDSEFN-QALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (657)
Q Consensus 182 ~~~P~f~~~~~e~e~~~v~~E~~-~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~ 260 (657)
+.+|.|+++++++|+..+.+|++ ...++|..++.+.+...+|++|||+++..|+.++|.+ +++++|++||++|
T Consensus 111 ~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~------it~~~l~~f~~~~ 184 (445)
T 3ami_A 111 MANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQN------MTAQDVRDWYKRW 184 (445)
T ss_dssp HHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHH------CCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhh------CCHHHHHHHHHHh
Confidence 99999999999999999999999 6678899999999999999999999999999999998 9999999999999
Q ss_pred ccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCC---Cchhh
Q 006184 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC---LHQEY 337 (657)
Q Consensus 261 y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~---~~~~~ 337 (657)
|+|+||+|+|+|++++++++++|+++|+.||++..+.+... ..+.......+.+.....++.+.++|++|. .....
T Consensus 185 y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 263 (445)
T 3ami_A 185 YGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQ-GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSR 263 (445)
T ss_dssp CSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCC-CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCH
T ss_pred CCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCCCceEEEEecCCCccEEEEEEEcCCcccccCCh
Confidence 99999999999999999999999999999997653322111 112222333444444457789999999988 43245
Q ss_pred hccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCcccc-ccEEEEEEEeCccccccHHHHHHHHHHHHHH
Q 006184 338 LKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSI-AYIFVMSIHLTDSGLEKIFDIIGFVYQYIKL 415 (657)
Q Consensus 338 ~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~-~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~ 415 (657)
+..++.+++.+||++..++|++.|| ++||+|+++++...... + .|.|.|++.+.+. .+++++++.++++|+.
T Consensus 264 ~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~----~~~g~~~i~~~~~~~--~~~~~~~~~i~~~l~~ 337 (445)
T 3ami_A 264 DAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSR----GQQGLFILEGVPSKG--VTIAQLETDLRAQVRD 337 (445)
T ss_dssp HHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCS----SCCEEEEEEEEECTT--CCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeecccccc----CCCCeEEEEEEECCC--CCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999 89999999987653222 3 4599999999882 2599999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCC-CCccccccccccccCCHHHHHHHHhh-cCcCceEE
Q 006184 416 LRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIY-PAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRI 493 (657)
Q Consensus 416 L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~-~~~~~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i 493 (657)
|++.|+++++++++|+.+..++....+ ++..++..++...... ++..+......++++|+++|++++++ |.++++.+
T Consensus 338 l~~~g~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~ 416 (445)
T 3ami_A 338 IAAKGVTEAELSRVKSQMVAGKVYEQD-SLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTV 416 (445)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEE
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEE
Confidence 999999999999999999999887654 5677788888776544 44555566678999999999999986 88999999
Q ss_pred EEEeCCC
Q 006184 494 DVVSKSF 500 (657)
Q Consensus 494 ~iv~~~~ 500 (657)
++++|.-
T Consensus 417 ~~~~p~~ 423 (445)
T 3ami_A 417 ANLVPLP 423 (445)
T ss_dssp EEEEEEC
T ss_pred EEEccCc
Confidence 9999863
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.1e-55 Score=480.33 Aligned_cols=400 Identities=16% Similarity=0.188 Sum_probs=350.7
Q ss_pred ceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEEE
Q 006184 24 YRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAM 103 (657)
Q Consensus 24 y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (657)
|+..+|+|||+|++++++.. + .+++.+
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~~~~~l 28 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTV------R-----------------------------------------------SVSIGI 28 (421)
T ss_dssp CEEEECTTSCEEEEEECTTC------S-----------------------------------------------EEEEEE
T ss_pred ceEEEcCCCCEEEEEECCCC------C-----------------------------------------------EEEEEE
Confidence 78899999999999999987 6 999999
Q ss_pred EecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhhh
Q 006184 104 CVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFI 183 (657)
Q Consensus 104 ~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~~ 183 (657)
++++|++.||.+.+|+|||+|||+|.||++|+. .++.+.++.+||.+||+|+.++|+|++++++++++.+|+++++++.
T Consensus 29 ~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~ 107 (421)
T 3hdi_A 29 WVGTGSRYESAEENGISHFLEHMFFKGTNTRSA-QEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFF 107 (421)
T ss_dssp EESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBH-HHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred EEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987 7999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhccC
Q 006184 184 SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQG 263 (657)
Q Consensus 184 ~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~ 263 (657)
+|.|+++++++|+..+.+|++...++|..++.+.+...+|++|||+++..|+.++|.+ +++++|++||+++|+|
T Consensus 108 ~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~------it~~~l~~f~~~~y~p 181 (421)
T 3hdi_A 108 HSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNS------FNEGMLRHYMDRFYTG 181 (421)
T ss_dssp SBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHH------CCHHHHHHHHHHHSST
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh------CCHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhhccHHH
Q 006184 264 GLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSED 343 (657)
Q Consensus 264 ~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~ 343 (657)
+||+|+|+|+++ +++.++++++|+.||++..+.+ . ..|.+ .+..+...+..++..+.++|+.+... +.+..++.
T Consensus 182 ~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~-~--~~~~~-~~~~~~~~~~~~q~~v~~~~~~~~~~-~~d~~~l~ 255 (421)
T 3hdi_A 182 DYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQ-G--EKPMF-LPNRIVRKKETEQAHLCLGYPGLPIG-DKDVYALV 255 (421)
T ss_dssp TTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCC-C--CCCCC-CCCEEEEECCCSEEEEEEEEECCCTT-CTTHHHHH
T ss_pred ccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCC-C--CCCCC-CCceEEecCCCCceEEEEEEecCCCC-CchHHHHH
Confidence 999999999999 9999999999999987654322 1 11222 23334445566788899999987653 23568999
Q ss_pred HHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCc
Q 006184 344 YLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQ 422 (657)
Q Consensus 344 ~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~ 422 (657)
+++.+||++..++|++.|| ++||+|+++++.... .+.|.|.|++.+.+ ++++++++.+.++|+.+++.|++
T Consensus 256 vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~~l~~~~~t 327 (421)
T 3hdi_A 256 LLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSF-----RDSGMLTIYAGTGH---DQLDDLVYSIQETTSALAEKGLT 327 (421)
T ss_dssp HHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEEC-----SSCEEEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCcccHHHHHHHHhcCCEEEEEEeeccc-----CCCceEEEEEEeCH---HHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999 789999999876542 13569999999998 79999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCC-CccccccccccccCCHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 423 KWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP-AEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 423 e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~-~~~~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
+++++++|+.+..++....+ ++...+..++......+ ..........++++|+++|++++++ + ++++.++++||.
T Consensus 328 ~~el~~ak~~l~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~ 404 (421)
T 3hdi_A 328 EKELENGKEQLKGSLMLSLE-STNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINAN 404 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECch
Confidence 99999999999998876554 46667777765433222 2333344567999999999999997 7 999999999996
No 6
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3.7e-53 Score=464.16 Aligned_cols=408 Identities=13% Similarity=0.089 Sum_probs=347.1
Q ss_pred CcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceE
Q 006184 20 DKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKA 99 (657)
Q Consensus 20 d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (657)
..+.++..+|+||++|++++++ . + .+
T Consensus 10 ~~~~~~~~~L~NGl~v~~~~~~-~------~-----------------------------------------------~~ 35 (446)
T 1pp9_A 10 SVPETQVSQLDNGLRVASEQSS-Q------P-----------------------------------------------TC 35 (446)
T ss_dssp TSCCCEEEECTTCCEEEEEECS-C------S-----------------------------------------------EE
T ss_pred cccCceEEECCCCCEEEEEeCC-C------C-----------------------------------------------EE
Confidence 3467899999999999998876 3 3 99
Q ss_pred EEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHH
Q 006184 100 AAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFS 179 (657)
Q Consensus 100 ~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la 179 (657)
.+.+.+++|+..||.+..|+|||+|||+|+||++|+. .++.+.++.+||.+||+|+.++|+|++++++++++.+|++++
T Consensus 36 ~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~ 114 (446)
T 1pp9_A 36 TVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG-NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLA 114 (446)
T ss_dssp EEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTT-THHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCH-HHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 589999999999999999999999999999999999999999
Q ss_pred HhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHh
Q 006184 180 QFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMN 259 (657)
Q Consensus 180 ~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~ 259 (657)
+++.+|.|+++++++|+..+.+|++...++|..++.+.+...+|++|||+++..|+.++|.+ +++++|++||++
T Consensus 115 d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------~~~~~l~~f~~~ 188 (446)
T 1pp9_A 115 DIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRK------LSRADLTEYLSR 188 (446)
T ss_dssp HHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh------CCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhhc
Q 006184 260 YYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLK 339 (657)
Q Consensus 260 ~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~ 339 (657)
||+|+||+|+|+|++++++++++++++|+.|+.+..+.+...+..+.+..+.++...+..++..+.++|+.|.... .+.
T Consensus 189 ~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~d~ 267 (446)
T 1pp9_A 189 HYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAH-PDN 267 (446)
T ss_dssp HCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSEEEEEEEEECCTTC-THH
T ss_pred ccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccceEEEEEEecCCCCC-ccH
Confidence 9999999999999999999999999999999876533211100012222333333344457889999999887532 356
Q ss_pred cHHHHHHHHhcC---------CCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHH
Q 006184 340 KSEDYLAHLLGH---------EGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVY 410 (657)
Q Consensus 340 ~~~~~l~~lLg~---------~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~ 410 (657)
.++.+++++||+ +..++|++.||++|++|+++++.... .+.|.|.+++.+.+ ++++++++.+.
T Consensus 268 ~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~ 339 (446)
T 1pp9_A 268 VALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICY-----ADTGLLGAHFVCDH---MSIDDMMFVLQ 339 (446)
T ss_dssp HHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEEC-----SSCEEEEEEEEECT---TSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccC-----CCCeEEEEEEEECH---HHHHHHHHHHH
Confidence 799999999986 45788999999889999998876431 13469999999888 79999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCC-CccccccccccccCCHHHHHHHHhh-cCc
Q 006184 411 QYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP-AEHVIYGEYMYEVWDEEMIKHLLGF-FMP 488 (657)
Q Consensus 411 ~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~-~~~~l~~~~~i~~vt~edI~~~~~~-l~~ 488 (657)
++|+.+++ ++++++++++|+.+..++.... +++...+..++..+..++ +.........+.++|+++|++++++ +.+
T Consensus 340 ~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~ 417 (446)
T 1pp9_A 340 GQWMRLCT-SATESEVLRGKNLLRNALVSHL-DGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYD 417 (446)
T ss_dssp HHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHhc-cCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHcCC
Confidence 99999988 6999999999999999887654 356777777776542222 2233344467899999999999987 778
Q ss_pred CceEEEEEeCC
Q 006184 489 ENMRIDVVSKS 499 (657)
Q Consensus 489 ~n~~i~iv~~~ 499 (657)
+++.++++||.
T Consensus 418 ~~~~~~~~g~~ 428 (446)
T 1pp9_A 418 QCPAVAGFGPI 428 (446)
T ss_dssp CCCEEEEEESC
T ss_pred CCcEEEEECCc
Confidence 89999999986
No 7
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.1e-55 Score=523.54 Aligned_cols=527 Identities=13% Similarity=0.132 Sum_probs=408.3
Q ss_pred ccCCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhccccccc
Q 006184 15 IKSPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFS 94 (657)
Q Consensus 15 ~k~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (657)
..+..+.+.|++.+|+|||+|++++++.. +
T Consensus 29 ~~~~~~~~~~~~~~l~nGl~v~~~~~~~~------~-------------------------------------------- 58 (995)
T 2fge_A 29 FISECKSKAILFKHKKTGCEVMSVSNEDE------N-------------------------------------------- 58 (995)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEECSCS------S--------------------------------------------
T ss_pred ecccccceEEEEEECCCCCEEEEEEcCCC------c--------------------------------------------
Confidence 45566788999999999999999999977 4
Q ss_pred ccceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHh-cCCccceeeCCCceEEEEEeC-hhhHH
Q 006184 95 QTKKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK-HGGSSNAYTETEHTCYHFEIK-REFLK 172 (657)
Q Consensus 95 ~~~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~-~gg~~na~t~~e~t~~~~~~~-~~~l~ 172 (657)
. ++.+|++.+|.+.+|+|||||||+|+||++||..+.+.+++.+ .||.+||+|+.++|+|++.+. .++++
T Consensus 59 ---~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~ 130 (995)
T 2fge_A 59 ---K-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFY 130 (995)
T ss_dssp ---E-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHH
T ss_pred ---c-----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHH
Confidence 4 3678999999999999999999999999999986668888876 588999999999999999885 67999
Q ss_pred HHHHHHHHhhhCCCC--ChHHHHHH---------------HHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 006184 173 GALMRFSQFFISPLM--KVEAMERE---------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGN 235 (657)
Q Consensus 173 ~aL~~la~~~~~P~f--~~~~~e~e---------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~ 235 (657)
.+|+++++++.+|.| +++.+++| +.+|.+|++.+.++|.+++++.+...+|++|||+++.+|+
T Consensus 131 ~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~ 210 (995)
T 2fge_A 131 NLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGD 210 (995)
T ss_dssp HHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 999999999999999 99999999 8999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhcccc--CCCCCCCCCcccccccccce--
Q 006184 236 KKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVR--KGPQIKPQFTVEGTIWKACK-- 311 (657)
Q Consensus 236 ~etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip--~~~~~~~~~~~~~~~~~~~~-- 311 (657)
.++|.+ +++++|++||++||+|+||+|+|+|++++++++++|+++|+.|+ ++..+.+.. ..+++....
T Consensus 211 ~~~i~~------~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~ 282 (995)
T 2fge_A 211 PKDIPN------LTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK--FQKLFSEPVRL 282 (995)
T ss_dssp TTTGGG------CCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC--CCCCCSSCEEE
T ss_pred hHhhhh------cCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC--CCCCCCCCceE
Confidence 999998 99999999999999999999999999999999999999999998 432111110 112222221
Q ss_pred --EEEE---eecCcccEEEEEEEcCCCc-hhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeee-eCCCCCCcccc
Q 006184 312 --LFRL---EAVKDVHILDLTWTLPCLH-QEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAG-VGDEGMHRSSI 384 (657)
Q Consensus 312 --~~~~---~~~~~~~~l~i~f~~p~~~-~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~-~~~~~~~~~~~ 384 (657)
.+.+ .+..+++.+.++|++|... ..++..++.+|+++||++..++|++.||++||+|+++++ +... . .
T Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~-~----~ 357 (995)
T 2fge_A 283 VEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDE-L----L 357 (995)
T ss_dssp EEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECS-S----S
T ss_pred EEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCcceeecccccc-c----c
Confidence 1212 3345688999999999866 456778999999999998888899999988999999865 3321 1 2
Q ss_pred ccEEEEEEE-eCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccC-CChh--HHHHHHHHhcCC-C
Q 006184 385 AYIFVMSIH-LTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEE-QPQD--DYAAELAGNLLI-Y 459 (657)
Q Consensus 385 ~g~f~i~~~-l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~-~~~~--~~~~~la~~l~~-~ 459 (657)
.|.|.|.+. +.+ ++++++++.++++|+++++.|+++++++++|+.+...+..... ..+. .++..++....+ .
T Consensus 358 ~~~f~i~~~~~~~---~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (995)
T 2fge_A 358 QPQFGIGLKGVSE---ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDM 434 (995)
T ss_dssp SCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEEEeCCH---HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCC
Confidence 458998754 555 7999999999999999999999999999999998888765432 2233 456666655544 3
Q ss_pred CCccccccccccccCCH----H----HHHHHHhh-cCcC-ceEEEEEeCCCC-CCCCccccceecceeeeecCChHHHH-
Q 006184 460 PAEHVIYGEYMYEVWDE----E----MIKHLLGF-FMPE-NMRIDVVSKSFA-KSQDFHYEPWFGSRYTEEDISPSLME- 527 (657)
Q Consensus 460 ~~~~~l~~~~~i~~vt~----e----dI~~~~~~-l~~~-n~~i~iv~~~~~-~~~~~~~e~~y~~~Y~~~~i~~~~~~- 527 (657)
++...+.....++++++ + +|++++++ |.++ +..+++++|... ....+..|+|+.+.|. ..++++.++
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~-~~~~~~~~~~ 513 (995)
T 2fge_A 435 DPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVK-AAMTEEDLAE 513 (995)
T ss_dssp CSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHH-HTSCHHHHHH
T ss_pred ChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHH-HhCCHHHHHH
Confidence 55555555566777777 7 89999997 6553 667788888641 0123567898888774 345544433
Q ss_pred ---------hhcCCCCCCCcCCCCCCCCCCCCCccccccccCCCCcCCCCCeEEecCCCcEEEEecCCccCCceeeEEEE
Q 006184 528 ---------LWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFR 598 (657)
Q Consensus 528 ---------~~~~~~~~~~~l~lP~~N~fip~d~~l~~~~~~~~~~~~~~P~~~~~~~~~~~w~k~d~~F~~Pk~~i~~~ 598 (657)
.|+.... . |..+.++|... +....... ...|..+...+++++|++++ |..|.+++.+.
T Consensus 514 ~~~~~~~l~~~~~~~~-~-----~~~~~~~p~~~-~~~i~~~~----~~~~~~~~~~nG~~v~~~~~--~~~~~v~~~~~ 580 (995)
T 2fge_A 514 LARATEELKLKQETPD-P-----PEALRCVPSLN-LGDIPKEP----TYVPTEVGDINGVKVLRHDL--FTNDIIYTEVV 580 (995)
T ss_dssp HHHHHHHHHHHHTSCC-C-----HHHHTTSCCCC-GGGSCSSC----CCCCCEEEESSSSEEEEEEC--CCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCC-C-----hHHHHhcCCCC-HhhcCccC----CCCCceeeecCCceEEEEec--CCCCeEEEEEE
Confidence 3333211 1 11244566543 11111111 12677777788999999986 88999999988
Q ss_pred EecCCCcCCHHHHHHHHHHHHHHHH-Hhhhhccc
Q 006184 599 INLKGGYDNVKNCILTELFIHLLKD-ELNEIIYQ 631 (657)
Q Consensus 599 ~~~p~~~~s~~~~~~~~l~~~~~~~-~l~e~~Y~ 631 (657)
+..... ++....+..||+.++.. -...+.|.
T Consensus 581 ~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~ 612 (995)
T 2fge_A 581 FDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFV 612 (995)
T ss_dssp EECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHH
T ss_pred eeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHH
Confidence 887543 56677788899988887 55555554
No 8
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3e-52 Score=456.37 Aligned_cols=408 Identities=14% Similarity=0.107 Sum_probs=347.8
Q ss_pred ccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEE
Q 006184 22 RLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAA 101 (657)
Q Consensus 22 ~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (657)
+.++..+|+||++|++++++.. + .+.+
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~~~~ 31 (443)
T 1hr6_B 5 PGTRTSKLPNGLTIATEYIPNT------S-----------------------------------------------SATV 31 (443)
T ss_dssp CCCEEEECTTSCEEEEEECSSC------S-----------------------------------------------EEEE
T ss_pred CCceEEECCCCCEEEEEECCCC------C-----------------------------------------------EEEE
Confidence 5789999999999999998866 5 9999
Q ss_pred EEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHh
Q 006184 102 AMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQF 181 (657)
Q Consensus 102 ~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~ 181 (657)
.+.+++|+..||.+..|+|||+|||+|+||++|+. .++.+.++.+||++||+|+.++|+|++++++++++.+|++++++
T Consensus 32 ~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~-~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~ 110 (443)
T 1hr6_B 32 GIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQ-QGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDI 110 (443)
T ss_dssp EEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBH-HHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCH-HHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhc
Q 006184 182 FISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYY 261 (657)
Q Consensus 182 ~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y 261 (657)
+.+|.|+++++++++..+.+|++...++|..++.+.+...+|++|||+++..|+.++|.+ +++++|++||+++|
T Consensus 111 ~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~------~~~~~l~~f~~~~y 184 (443)
T 1hr6_B 111 LTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKS------ITRTDLKDYITKNY 184 (443)
T ss_dssp HHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHHHHHHHC
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------CCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcc--cccccccceEEEEeecCcccEEEEEEEcCCCchhhhc
Q 006184 262 QGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTV--EGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLK 339 (657)
Q Consensus 262 ~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~ 339 (657)
+|+||+|+|+|++++++++++++++|+.||.+..+.+.... ..+.+..+......+..++..+.++|+.|.... .+.
T Consensus 185 ~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~ 263 (443)
T 1hr6_B 185 KGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSA-PDY 263 (443)
T ss_dssp CGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTC-TTH
T ss_pred cCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccCCccceEEEEEEecCCCCC-ccH
Confidence 99999999999999999999999999999875433221100 012222333332244557789999999986432 356
Q ss_pred cHHHHHHHHhcC---------CCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeC--ccccccHHHHHH
Q 006184 340 KSEDYLAHLLGH---------EGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLT--DSGLEKIFDIIG 407 (657)
Q Consensus 340 ~~~~~l~~lLg~---------~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~--~~G~~~~~~v~~ 407 (657)
.++.+++.+||+ +..++|+..|| ++||+|+++++.... .+.|.|.+++.+. + ++++++++
T Consensus 264 ~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~-----~~~g~~~i~~~~~~~~---~~~~~~~~ 335 (443)
T 1hr6_B 264 FVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSY-----ADSGLWGMYIVTDSNE---HNVRLIVN 335 (443)
T ss_dssp HHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEEC-----SSCEEEEEEEEEETTT---CCHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCC-----CCceEEEEEEEecCCh---hHHHHHHH
Confidence 789999999986 45688999999 899999998876532 1346999999987 6 79999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcC-CCCCccccccccccccCCHHHHHHHHhh-
Q 006184 408 FVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF- 485 (657)
Q Consensus 408 ~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~-~~~~~~~l~~~~~i~~vt~edI~~~~~~- 485 (657)
.+.++|+.|++.++++++++++|+.+..++....+ ++..++..++..+. ...+.+.......+.++|+++|++++++
T Consensus 336 ~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~ 414 (443)
T 1hr6_B 336 EILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLD-GSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYR 414 (443)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999899999999999999998876544 46667776765532 2222233344567899999999999987
Q ss_pred cCcCceEEEEEeCC
Q 006184 486 FMPENMRIDVVSKS 499 (657)
Q Consensus 486 l~~~n~~i~iv~~~ 499 (657)
+.++++.++++||.
T Consensus 415 l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 415 LQNKPVSMVALGNT 428 (443)
T ss_dssp SSSCCEEEEEEECG
T ss_pred hccCCcEEEEECCc
Confidence 77889999999985
No 9
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.1e-51 Score=449.10 Aligned_cols=403 Identities=12% Similarity=0.081 Sum_probs=348.1
Q ss_pred cceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEE
Q 006184 23 LYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAA 102 (657)
Q Consensus 23 ~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (657)
.++.++|+||++|++++++.. + .+.++
T Consensus 3 ~~~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~~~~~ 29 (424)
T 3amj_B 3 KIEHWTAPSGAQVYYVENRTL------P-----------------------------------------------MLDVQ 29 (424)
T ss_dssp CCEEEECTTSCEEEEEECCSS------S-----------------------------------------------EEEEE
T ss_pred ccEEEECCCCcEEEEEECCCC------C-----------------------------------------------EEEEE
Confidence 578899999999999999977 6 99999
Q ss_pred EEecccCCCCCCCCCChHHHHHHHhccCCc----CCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhH--HHHHH
Q 006184 103 MCVGMGSFCDPVEAQGLAHFLEHMLFMGST----EFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFL--KGALM 176 (657)
Q Consensus 103 l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~----~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l--~~aL~ 176 (657)
+.+++|+..+|.+..|+|||++||+|.||+ +|+. .++.++++++||++|++|+.++|+|++++.++++ +.+|+
T Consensus 30 l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~-~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~l~~~l~ 108 (424)
T 3amj_B 30 VDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDE-NAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALT 108 (424)
T ss_dssp EEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEH-HHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHHHHHHHH
T ss_pred EEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCH-HHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccChhHHHH
Confidence 999999999999999999999999999999 9997 6899999999999999999999999999999998 99999
Q ss_pred HHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHH
Q 006184 177 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (657)
Q Consensus 177 ~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f 256 (657)
++++++.+|.|++++++++++.+.+|++...++|..++.+.+...+|++|||+++. +.++|.+ +++++|++|
T Consensus 109 ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~------it~~~l~~f 180 (424)
T 3amj_B 109 ILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQK------ISRDQLVSF 180 (424)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHHH------CCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHHh------CCHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999887 8899988 999999999
Q ss_pred HHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchh
Q 006184 257 YMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQE 336 (657)
Q Consensus 257 ~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~ 336 (657)
|+++|+|+||+|+|+||++.++++++++++|+.||.+..+.+.. .++.+.+..+.+.....+..+.++|+.+... .
T Consensus 181 ~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 256 (424)
T 3amj_B 181 HRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLP---DPAMPRATVERIANPATQAHIAIGMPTLKRG-D 256 (424)
T ss_dssp HHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCC---CCCCCCCEEEEEECSSSEEEEEEEEEEEBTT-C
T ss_pred HHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCC---CCCCCCCceEEeeCCCCccEEEeeccCCCCC-C
Confidence 99999999999999999999999999999999998654332211 1222233444444344778899999986543 2
Q ss_pred hhccHHHHHHHHhcCC-CCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHH
Q 006184 337 YLKKSEDYLAHLLGHE-GRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIK 414 (657)
Q Consensus 337 ~~~~~~~~l~~lLg~~-~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~ 414 (657)
.+..++.+++.+||++ ..++|++.|| ++||+|+++++.... .+.|.|.|++.+++ ++++++++.+.++|+
T Consensus 257 ~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~ 328 (424)
T 3amj_B 257 PDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQ-----KSMGLFQIGFETRA---EKADEAVQVANDTLD 328 (424)
T ss_dssp TTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCB-----SSCEEEEEEEEEES---TTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccC-----CCceeEEEEEEeCc---ccHHHHHHHHHHHHH
Confidence 3567899999999987 7788999999 799999999887642 13569999999988 789999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcC-CCCCccccccccccccCCHHHHHHHHhh-cCcCceE
Q 006184 415 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPENMR 492 (657)
Q Consensus 415 ~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~-~~~~~~~l~~~~~i~~vt~edI~~~~~~-l~~~n~~ 492 (657)
.+++.++++++|+++|+.+..++....+ ++..++..++.... ..+.+........++++|+++|++++++ |.++++.
T Consensus 329 ~l~~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~ 407 (424)
T 3amj_B 329 AFLREGPTDAELQAAKDNLINGFALRLD-SNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLI 407 (424)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTSGGGGS-SHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGCE
T ss_pred HHHhcCCCHHHHHHHHHHHHhhhhHhcC-CHHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccceE
Confidence 9999999999999999999998876554 46677777765433 3333444445577999999999999986 8899999
Q ss_pred EEEEeCCC
Q 006184 493 IDVVSKSF 500 (657)
Q Consensus 493 i~iv~~~~ 500 (657)
+++++|.+
T Consensus 408 ~~~~~~~~ 415 (424)
T 3amj_B 408 TVVVGGKA 415 (424)
T ss_dssp EEEEECC-
T ss_pred EEEECChh
Confidence 99999986
No 10
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=6.2e-51 Score=444.45 Aligned_cols=410 Identities=13% Similarity=0.058 Sum_probs=348.9
Q ss_pred CCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhccccccccc
Q 006184 17 SPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQT 96 (657)
Q Consensus 17 ~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (657)
++.....++.++|+||++|++++++.. +
T Consensus 7 ~~~~~~~~~~~~L~NGl~v~~~~~~~~------~---------------------------------------------- 34 (434)
T 3gwb_A 7 PSHRNLNVQTWSTAEGAKVLFVEAREL------P---------------------------------------------- 34 (434)
T ss_dssp -----CCCEEEECTTCCEEEEEECCSS------S----------------------------------------------
T ss_pred CcccCCCCEEEEcCCCeEEEEEECCCC------C----------------------------------------------
Confidence 334457899999999999999999977 6
Q ss_pred ceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhh--HHHH
Q 006184 97 KKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREF--LKGA 174 (657)
Q Consensus 97 ~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~--l~~a 174 (657)
.+.+.+.+++|+..+ ++..|+|||++||+|.|+++|+. .++.+.++.+||++|++|+.++|+|++++.+++ ++.+
T Consensus 35 -~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~-~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~ 111 (434)
T 3gwb_A 35 -MFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDV-GAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPA 111 (434)
T ss_dssp -EEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEH-HHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHH
T ss_pred -EEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCH-HHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHH
Confidence 999999999999999 78999999999999999999986 699999999999999999999999999999887 9999
Q ss_pred HHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHH
Q 006184 175 LMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIM 254 (657)
Q Consensus 175 L~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~ 254 (657)
|+++++++.+|.|+++.++++++.+.+|+++..++|..++.+.+..++|++|||+++..|+.++|.+ ++.++|+
T Consensus 112 l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------it~~~l~ 185 (434)
T 3gwb_A 112 LKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPP------ITLAQLK 185 (434)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTT------CCHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHh------CCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCc
Q 006184 255 KLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLH 334 (657)
Q Consensus 255 ~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~ 334 (657)
+||+++|+|+||+|+|+||++.+++.++++++|+.||.+..+.... . +....+....+.....+..+.++|+.+...
T Consensus 186 ~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 262 (434)
T 3gwb_A 186 AFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIE--Q-PAEPKASIGHIEFPSSQTSLMLAQLGIDRD 262 (434)
T ss_dssp HHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCC--C-CCCCCCEEEEEECCSSEEEEEEEEECCBTT
T ss_pred HHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCC--C-CCCCCCceEEEeCCCCceeEEecCcCCCCC
Confidence 9999999999999999999999999999999999998764322111 1 112222333333234678899999887643
Q ss_pred hhhhccHHHHHHHHhcCC-CCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHH
Q 006184 335 QEYLKKSEDYLAHLLGHE-GRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 412 (657)
Q Consensus 335 ~~~~~~~~~~l~~lLg~~-~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~ 412 (657)
. .+..++.+++.+||++ ..++|++.|| ++|++|+++++.... . +.|.|.|++.+.+ ++++++++.+.++
T Consensus 263 ~-~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~-~----~~g~~~i~~~~~~---~~~~~~~~~i~~~ 333 (434)
T 3gwb_A 263 D-PDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPM-Q----ARGPFMINLQTRA---EMSEGTLKLVQDV 333 (434)
T ss_dssp C-TTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCB-S----SCCEEEEEEEEEG---GGHHHHHHHHHHH
T ss_pred C-cchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccC-C----CceeEEEEEecch---hhHHHHHHHHHHH
Confidence 2 3457899999999998 7889999999 779999999987642 1 3469999999998 7899999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcC-CCCCccccccccccccCCHHHHHHHHhh-cCcCc
Q 006184 413 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMPEN 490 (657)
Q Consensus 413 l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~-~~~~~~~l~~~~~i~~vt~edI~~~~~~-l~~~n 490 (657)
|+.+++.++++++++++|+.+..++....+ ++..++..++.... ..+.+........++++|+++|++++++ |.+++
T Consensus 334 l~~l~~~~~~~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~ 412 (434)
T 3gwb_A 334 FAEYLKNGPTQKELDDAKRELAGSFPLSTA-SNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDK 412 (434)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHC---CCC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhhhhhcc-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhh
Confidence 999999999999999999999998876544 56777777766543 3333444455677999999999999996 88999
Q ss_pred eEEEEEeCCC
Q 006184 491 MRIDVVSKSF 500 (657)
Q Consensus 491 ~~i~iv~~~~ 500 (657)
+.++++||.-
T Consensus 413 ~~~~vvg~~~ 422 (434)
T 3gwb_A 413 MVIVSAGPTV 422 (434)
T ss_dssp CEEEEEECCC
T ss_pred EEEEEEcCcc
Confidence 9999999974
No 11
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=4e-51 Score=451.73 Aligned_cols=403 Identities=11% Similarity=0.068 Sum_probs=342.3
Q ss_pred cccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEE
Q 006184 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (657)
Q Consensus 21 ~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (657)
.+.++..+|+|||+|++.+++ . + .+.
T Consensus 3 ~~~~~~~~L~NGl~v~~~~~~-~------~-----------------------------------------------~~~ 28 (475)
T 1hr6_A 3 TDNFKLSSLANGLKVATSNTP-G------H-----------------------------------------------FSA 28 (475)
T ss_dssp TTCCEEEECTTSCEEEEESCC-C------S-----------------------------------------------SEE
T ss_pred CCCceEEECCCCCEEEEEeCC-C------C-----------------------------------------------EEE
Confidence 457899999999999998765 3 3 999
Q ss_pred EEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHH
Q 006184 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQ 180 (657)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~ 180 (657)
+.+.+++|++.||++..|+|||+|||+|.||++|+. .++.++++.+||.+||+|+.++|+|++++.+++++.+|+++++
T Consensus 29 ~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~-~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d 107 (475)
T 1hr6_A 29 LGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEG-RAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSE 107 (475)
T ss_dssp EEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCH-HHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHH
T ss_pred EEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCH-HHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred hhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhh
Q 006184 181 FFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (657)
Q Consensus 181 ~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~ 260 (657)
++.+|.|++++|++|+..+.+|+++..++|..++.+.+..++|++|||+++..|+.++|.+ +++++|++||++|
T Consensus 108 ~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------it~~~l~~f~~~~ 181 (475)
T 1hr6_A 108 TVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS------ISKYYLLDYRNKF 181 (475)
T ss_dssp HHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGG------CCHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------cCHHHHHHHHHHh
Confidence 9999999999999999999999999889999999999999999999999999999999998 9999999999999
Q ss_pred ccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEe------ecCcccEEEEEEEcCCCc
Q 006184 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLE------AVKDVHILDLTWTLPCLH 334 (657)
Q Consensus 261 y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~i~f~~p~~~ 334 (657)
|+|+||+|+|+| +++++++++++++|+.|+.+..+.+. +.+.+..+ .+.+. +..+++.+.++|+.++..
T Consensus 182 y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 256 (475)
T 1hr6_A 182 YTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITK---KVAQYTGG-ESCIPPAPVFGNLPELFHIQIGFEGLPID 256 (475)
T ss_dssp CCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCC---CCCCCCCE-EEEECCCCCCSSSCCCEEEEEEEECCCTT
T ss_pred CCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCCC---CCCCCcCC-eEEEecccccCCCccceEEEEEEecCCCC
Confidence 999999999999 99999999999999999865432111 11222222 22333 455678899999966543
Q ss_pred hhhhccHHHHHHHHhcCC-----------CCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccH
Q 006184 335 QEYLKKSEDYLAHLLGHE-----------GRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 402 (657)
Q Consensus 335 ~~~~~~~~~~l~~lLg~~-----------~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~ 402 (657)
+.+..++.+++.+||++ ..++|+..|| ++||+|+++++.... .+.|.|.|++.+.+ +++
T Consensus 257 -~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~-----~~~g~~~i~~~~~~---~~~ 327 (475)
T 1hr6_A 257 -HPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY-----SDSGIFGISLSCIP---QAA 327 (475)
T ss_dssp -CTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEEC-----SSCEEEEEEEEECG---GGH
T ss_pred -CccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEecccc-----CCCceEEEEEEeCH---HHH
Confidence 23567899999999975 3488999999 789999999876532 13469999999988 799
Q ss_pred HHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCC-CccccccccccccCCHHH
Q 006184 403 FDIIGFVYQYIKLLRQ---VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP-AEHVIYGEYMYEVWDEEM 478 (657)
Q Consensus 403 ~~v~~~v~~~l~~L~~---~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~-~~~~l~~~~~i~~vt~ed 478 (657)
.++++.+.++++.+++ .+++++||+++|+.+..++....+ ++...+..++..+..++ +.........++++|+++
T Consensus 328 ~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~d 406 (475)
T 1hr6_A 328 PQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLE-SKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDD 406 (475)
T ss_dssp HHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHH
Confidence 9999999999999987 789999999999999998876543 46666777766532222 222334456789999999
Q ss_pred HHHHHhh-cCc---------CceEEEEEeCC
Q 006184 479 IKHLLGF-FMP---------ENMRIDVVSKS 499 (657)
Q Consensus 479 I~~~~~~-l~~---------~n~~i~iv~~~ 499 (657)
|++++++ +.+ +++.++++|+.
T Consensus 407 v~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 407 ISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 9999987 776 58899999974
No 12
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=9.9e-49 Score=427.68 Aligned_cols=402 Identities=12% Similarity=0.075 Sum_probs=343.0
Q ss_pred CCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccce
Q 006184 19 NDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKK 98 (657)
Q Consensus 19 ~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (657)
.+...++.++|+||++|+++++ .. + .
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~-~~------~-----------------------------------------------~ 44 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLEN-YA------P-----------------------------------------------A 44 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECC-CC------S-----------------------------------------------E
T ss_pred ccCCCceEEECCCCcEEEEEeC-CC------c-----------------------------------------------e
Confidence 3567899999999999999999 56 6 9
Q ss_pred EEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHH
Q 006184 99 AAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRF 178 (657)
Q Consensus 99 ~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~l 178 (657)
+.+.+.+++|+..++.+..|+|||++||+|.||++++. .++.+.++.+||.+|++|+.++|+|++++++++++.+|+++
T Consensus 45 ~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~-~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll 123 (439)
T 1pp9_B 45 SRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASS-FKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFL 123 (439)
T ss_dssp EEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCH-HHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCH-HHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999996 69999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHH
Q 006184 179 SQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYM 258 (657)
Q Consensus 179 a~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~ 258 (657)
++++.+|.|++++++++++.+.+|++...++|..++.+.+...+|+ |||+++..|+.++|.+ +++++|++||+
T Consensus 124 ~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~------it~~~l~~f~~ 196 (439)
T 1pp9_B 124 LNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGK------VTPVELHDYVQ 196 (439)
T ss_dssp HHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTT------CCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhh------cCHHHHHHHHH
Confidence 9999999999999999999999999998899999999999999999 9999999999999988 99999999999
Q ss_pred hhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhh
Q 006184 259 NYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYL 338 (657)
Q Consensus 259 ~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~ 338 (657)
++|+|+||+++|+|+ ++++++++++++|+ ||.+..+.+ . + +++..+. +.+....+++.+.++|+.|+... .+
T Consensus 197 ~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~~-~--~-~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~ 268 (439)
T 1pp9_B 197 NHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLSG-A--K-AKYHGGE-IREQNGDSLVHAALVAESAAIGS-AE 268 (439)
T ss_dssp HHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CCC-C--C-CCBCCEE-EEEECCCSEEEEEEEEECCCTTS-HH
T ss_pred HhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCCC-C--C-CCCcCCe-EEecCCccceEEEEEecCCCCCc-hH
Confidence 999999999999999 99999999999999 986543221 1 1 2222232 23333456788999999887543 35
Q ss_pred ccHHHHHHHHhcCCC--------CChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHH
Q 006184 339 KKSEDYLAHLLGHEG--------RGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFV 409 (657)
Q Consensus 339 ~~~~~~l~~lLg~~~--------~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v 409 (657)
..++.+++++||+++ .++|++.|| ++||+|+++++.... .+.|.|.+++.+.+ ++++++++.+
T Consensus 269 ~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~~ 340 (439)
T 1pp9_B 269 ANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASY-----SDSGLFGFYTISQA---ASAGDVIKAA 340 (439)
T ss_dssp HHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEE-----TTEEEEEEEEEEEG---GGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccc-----cccceEEEEEEeCH---HHHHHHHHHH
Confidence 678999999999763 689999999 899999998876531 13569999999988 7999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCC-CCCccccccccccccCCHHHHHHHHhhcCc
Q 006184 410 YQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGFFMP 488 (657)
Q Consensus 410 ~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~-~~~~~~l~~~~~i~~vt~edI~~~~~~l~~ 488 (657)
.++++.+++.++++++|+++|+.+..++....+ ++..++..++..... ..+.........++++|+++|+++++++..
T Consensus 341 ~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~ 419 (439)
T 1pp9_B 341 YNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVE-SSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVS 419 (439)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTS-SHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999998876544 466677766655432 223333344567999999999999987333
Q ss_pred CceEEEEEeCC
Q 006184 489 ENMRIDVVSKS 499 (657)
Q Consensus 489 ~n~~i~iv~~~ 499 (657)
+++.++++||.
T Consensus 420 ~~~~~~v~g~~ 430 (439)
T 1pp9_B 420 GRKSMAASGNL 430 (439)
T ss_dssp SCEEEEEEECG
T ss_pred CCceEEEECCc
Confidence 89999999985
No 13
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-48 Score=423.38 Aligned_cols=396 Identities=9% Similarity=0.055 Sum_probs=334.2
Q ss_pred EEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEEEEec
Q 006184 27 IELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMCVG 106 (657)
Q Consensus 27 ~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 106 (657)
++|+||++|++++++.. + .+.+.+.++
T Consensus 6 ~~L~nG~~v~~~~~~~~------~-----------------------------------------------~~~~~~~~~ 32 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKY------K-----------------------------------------------TVRLLVRFN 32 (425)
T ss_dssp EEEETTEEEEEEECSSC------S-----------------------------------------------EEEEEEEEE
T ss_pred eeccCCcEEEEEecCcc------c-----------------------------------------------eEEEEEEEe
Confidence 89999999999999877 6 999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhc-CCccceeeCCCce----EEEEEeChh-------hHHHH
Q 006184 107 MGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKH-GGSSNAYTETEHT----CYHFEIKRE-------FLKGA 174 (657)
Q Consensus 107 ~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~-gg~~na~t~~e~t----~~~~~~~~~-------~l~~a 174 (657)
+|+..++ +|++||++||+|.|+++||...++.+.++.+ ||.+|++|+.++| +|++++.++ +++.+
T Consensus 33 ~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (425)
T 3d3y_A 33 TRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEA 109 (425)
T ss_dssp EECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHH
T ss_pred CCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhccchhHHHHH
Confidence 9998765 6999999999999999998778999999998 9999999999985 899999887 69999
Q ss_pred HHHHHHhhhCCC-----CChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCC-CCCCCCCCCCCChhhhhhhhhcCcc
Q 006184 175 LMRFSQFFISPL-----MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQ-LGHAFNKFFWGNKKSLIGAMEKGIN 248 (657)
Q Consensus 175 L~~la~~~~~P~-----f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~-~~hp~~~~~~G~~etL~~~~~~~~~ 248 (657)
|+++++++.+|. |++++++++++.+.+|+++..++|..++.+.+...+| ++|||+++..|+.++|.+ +
T Consensus 110 l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~------~ 183 (425)
T 3d3y_A 110 VDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAE------E 183 (425)
T ss_dssp HHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHH------C
T ss_pred HHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHh------C
Confidence 999999999999 9999999999999999999889999999999999999 899999999999999998 9
Q ss_pred HHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEE
Q 006184 249 LQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTW 328 (657)
Q Consensus 249 ~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f 328 (657)
++++|++||+++|+|+||+++|+|+++++++.+++ ++|+ ||.+..+.+......+.......+...+..+++.+.++|
T Consensus 184 t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 261 (425)
T 3d3y_A 184 TAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAY 261 (425)
T ss_dssp CHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCCSSCEEEEEEEECSSEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCCCcceeEEecCCccccEEEEEe
Confidence 99999999999999999999999999999999999 9999 986543221110011111122334445567888999999
Q ss_pred EcCCCchhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHH
Q 006184 329 TLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIG 407 (657)
Q Consensus 329 ~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~ 407 (657)
++|......+..++.+++++||++..++|++.|| ++||+|+++++... ..|.|.|++.+.+ ++++++++
T Consensus 262 ~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~-------~~g~~~i~~~~~~---~~~~~~~~ 331 (425)
T 3d3y_A 262 NTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDT-------FRGFMTVQTGIDG---KNRNQVLR 331 (425)
T ss_dssp ECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEET-------TTTEEEEEEEECG---GGHHHHHH
T ss_pred ecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccc-------cCceEEEEEecCH---hhHHHHHH
Confidence 9874333346689999999999988999999999 78999999987653 1358999999988 79999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCC-CCCccccccccccccCCHHHHHHHHhhc
Q 006184 408 FVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGFF 486 (657)
Q Consensus 408 ~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~-~~~~~~l~~~~~i~~vt~edI~~~~~~l 486 (657)
.+.++++.+++.++++++|+++|+.+..++....+ ++..++..+...... ..+.+.......++++|+++|+++++++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~ 410 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALD-NAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRL 410 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhccc-CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhc
Confidence 99999999999999999999999999998877554 566777767665544 2233444455679999999999999987
Q ss_pred CcCceEEEEEeC
Q 006184 487 MPENMRIDVVSK 498 (657)
Q Consensus 487 ~~~n~~i~iv~~ 498 (657)
.+++.. +++|+
T Consensus 411 ~~~~~~-~v~g~ 421 (425)
T 3d3y_A 411 ELQAIF-FLEGE 421 (425)
T ss_dssp EEEEEE-EEEEE
T ss_pred cCceEE-EEeCC
Confidence 776554 44554
No 14
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=8.5e-48 Score=419.10 Aligned_cols=395 Identities=12% Similarity=0.058 Sum_probs=332.9
Q ss_pred eeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEEEEEE
Q 006184 25 RVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAAAAMC 104 (657)
Q Consensus 25 ~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (657)
+.++|+||++|++++++.. + .+.+.+.
T Consensus 2 ~~~~L~NGl~v~~~~~~~~------~-----------------------------------------------~~~~~l~ 28 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSA------H-----------------------------------------------TASVGVV 28 (431)
T ss_dssp CCEEEESSSEEEEEECTTC------S-----------------------------------------------SEEEEEE
T ss_pred eEEECCCCCEEEEEECCCC------C-----------------------------------------------EEEEEEE
Confidence 5689999999999999977 6 9999999
Q ss_pred ecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHHHHHhhhC
Q 006184 105 VGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMRFSQFFIS 184 (657)
Q Consensus 105 v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~la~~~~~ 184 (657)
+++|+..||++..|+|||+|||+|.|+.+| .++.+||++|++|+.++|+|++++++++++.+|+++++++.+
T Consensus 29 ~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~--------~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~ 100 (431)
T 3cx5_A 29 FGSGAANENPYNNGVSNLWKNIFLSKENSA--------VAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQ 100 (431)
T ss_dssp ESCCGGGSCTTTTTHHHHHHHHHTSHHHHH--------HHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHHHHT
T ss_pred EecCccCCCCCCcchHHHHHHHHhcCCCcc--------cHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHHHhC
Confidence 999999999999999999999999998553 478899999999999999999999999999999999999999
Q ss_pred CC---CChHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhh
Q 006184 185 PL---MKVEAMEREVLAVDSEFNQALQND-ACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNY 260 (657)
Q Consensus 185 P~---f~~~~~e~e~~~v~~E~~~~~~~~-~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~ 260 (657)
|. |++++++++++.+.+|++...++| ..++.+.+...+|++|||+++..|+.++|.+ ++.++|++||+++
T Consensus 101 p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~------~t~~~l~~f~~~~ 174 (431)
T 3cx5_A 101 QKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLEN------LVVADLESFANNH 174 (431)
T ss_dssp CSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHT------CCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhh------CCHHHHHHHHHhc
Confidence 99 999999999999999999888889 9999999999999999999999999999998 9999999999999
Q ss_pred ccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCchhhhcc
Q 006184 261 YQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQEYLKK 340 (657)
Q Consensus 261 y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~ 340 (657)
|+|+||+|+|+|++++++++++++++|+.||.+..+.+.. + +......+....+..+++.+.++|+.|.... .+..
T Consensus 175 y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~ 250 (431)
T 3cx5_A 175 FLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKK--K-AAFLGSEVRLRDDTLPKAWISLAVEGEPVNS-PNYF 250 (431)
T ss_dssp SCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCC--C-CCCCCEEEEEECTTSSSEEEEEEEECCCTTC-TTHH
T ss_pred CCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCC--C-CcccCceEEEcCCCCCceEEEEEeecCCCCC-ccHH
Confidence 9999999999999999999999999899998654322111 1 1222222322233456789999999887542 3567
Q ss_pred HHHHHHHHhcCC---------CCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHH
Q 006184 341 SEDYLAHLLGHE---------GRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQ 411 (657)
Q Consensus 341 ~~~~l~~lLg~~---------~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~ 411 (657)
++.+++++||++ .+++|++.||++|++|+++++.... .+.|.|.|++.+.+. ++++++++.+.+
T Consensus 251 ~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~-----~~~g~~~i~~~~~~~--~~~~~~~~~~~~ 323 (431)
T 3cx5_A 251 VAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSY-----KDSGLWGFSTATRNV--TMIDDLIHFTLK 323 (431)
T ss_dssp HHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEEC-----SSCEEEEEEEEESCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeeccc-----CCCceEEEEEeeCch--hhHHHHHHHHHH
Confidence 899999999963 4578999999889999998876531 134699999998761 589999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHhhhhh--ccCCChhHHHHHHHHhcC-CCCCccccccccccccCCHHHHHHHHhh-cC
Q 006184 412 YIKLLRQVSPQKWIFKELQDIGNMEFRF--AEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLLGF-FM 487 (657)
Q Consensus 412 ~l~~L~~~~i~e~el~~~k~~~~~~f~~--~~~~~~~~~~~~la~~l~-~~~~~~~l~~~~~i~~vt~edI~~~~~~-l~ 487 (657)
+|+.+++ ++++++|+++|+.+..++.. ..+ ++..++..++..+. ...+.........++++|+++|++++++ +.
T Consensus 324 ~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~ 401 (431)
T 3cx5_A 324 QWNRLTI-SVTDTEVERAKSLLKLQLGQLYESG-NPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLW 401 (431)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCS-CHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 9999998 99999999999999998877 544 56777777766532 1112233344567899999999999987 77
Q ss_pred cCceEEEEEeCC
Q 006184 488 PENMRIDVVSKS 499 (657)
Q Consensus 488 ~~n~~i~iv~~~ 499 (657)
++++.+++++|.
T Consensus 402 ~~~~~~~v~g~~ 413 (431)
T 3cx5_A 402 DQDIAIAGTGQI 413 (431)
T ss_dssp TCCCEEEEEESC
T ss_pred cCCcEEEEEcch
Confidence 899999999986
No 15
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=3.3e-47 Score=452.82 Aligned_cols=415 Identities=13% Similarity=0.126 Sum_probs=324.8
Q ss_pred CCCCcccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhccccccccc
Q 006184 17 SPNDKRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQT 96 (657)
Q Consensus 17 ~~~d~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (657)
|..+.+.|+...|+||++|++++++.. +
T Consensus 80 p~~~~~~~~~~~l~nGl~vl~i~~~~~------~---------------------------------------------- 107 (1193)
T 3s5m_A 80 EEFKMTYTVYQHKKAKTQVISLGTNDP------L---------------------------------------------- 107 (1193)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEECCT------T----------------------------------------------
T ss_pred CCccccceEEEECCCCCEEEEEECCCC------C----------------------------------------------
Confidence 445567899999999999999998865 2
Q ss_pred ceEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHh--cCCccceeeCCCceEEEEEeCh-hhHHH
Q 006184 97 KKAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSK--HGGSSNAYTETEHTCYHFEIKR-EFLKG 173 (657)
Q Consensus 97 ~~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~--~gg~~na~t~~e~t~~~~~~~~-~~l~~ 173 (657)
.+. ..+.+|+..+|.+..|+|||+|||+|+||++||.. ++...+.+ +||.+||+|+.++|+|++.+.+ ++|+.
T Consensus 108 -~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~-e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~ 183 (1193)
T 3s5m_A 108 -DVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYK-NSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFN 183 (1193)
T ss_dssp -CCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCT-THHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHH
T ss_pred -eEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChh-hHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHH
Confidence 222 23456777799999999999999999999999985 55555555 8999999999999999999876 99999
Q ss_pred HHHHHHHhhhCCCCChHH--HHHH-----------------------------HHHHHHHHHhccCCHHHHHHHHHHhhC
Q 006184 174 ALMRFSQFFISPLMKVEA--MERE-----------------------------VLAVDSEFNQALQNDACRLQQLQCHTS 222 (657)
Q Consensus 174 aL~~la~~~~~P~f~~~~--~e~e-----------------------------~~~v~~E~~~~~~~~~~~~~~~~~~~~ 222 (657)
+|+++++++.+|.|++++ |.+| +.+|.+|++...++|..++++.+...+
T Consensus 184 ~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~l 263 (1193)
T 3s5m_A 184 IMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYM 263 (1193)
T ss_dssp HHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Confidence 999999999999999888 8777 568999999999999999999999999
Q ss_pred CCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCC---CC
Q 006184 223 QLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK---PQ 299 (657)
Q Consensus 223 ~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~---~~ 299 (657)
|++|||+++..|++++|.+ +++++|++||++||+|+||+|+|+|+++++++.++|+++|+.|+.+..+. ..
T Consensus 264 f~~hpY~~~~~G~~e~I~~------lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~ 337 (1193)
T 3s5m_A 264 FPDNVHSNNSGGDPKEITN------LTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVES 337 (1193)
T ss_dssp CTTSGGGSCTTCCHHHHTT------CCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHhh------CCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCcccccc
Confidence 9999999999999999998 99999999999999999999999999999999999999999998654311 11
Q ss_pred CcccccccccceEEEEe----ecCcccEEEEEEEcCCC----ch-----------------------------hhhccHH
Q 006184 300 FTVEGTIWKACKLFRLE----AVKDVHILDLTWTLPCL----HQ-----------------------------EYLKKSE 342 (657)
Q Consensus 300 ~~~~~~~~~~~~~~~~~----~~~~~~~l~i~f~~p~~----~~-----------------------------~~~~~~~ 342 (657)
.. ..+++...+.+... +...+..+.++|++|.. .. ..+..++
T Consensus 338 ~~-~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al 416 (1193)
T 3s5m_A 338 VE-YQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVL 416 (1193)
T ss_dssp CC-CCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHH
T ss_pred cC-CCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHH
Confidence 11 11333333333322 23467899999999853 12 3577899
Q ss_pred HHHHHHhcCCCCChHHHHHHhCCCcceee-eeeCCCCCCccccccEEEEEEEeCccc------cccH-HHHHHHHHHHHH
Q 006184 343 DYLAHLLGHEGRGSLHSFLKGRGWATSIS-AGVGDEGMHRSSIAYIFVMSIHLTDSG------LEKI-FDIIGFVYQYIK 414 (657)
Q Consensus 343 ~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~-a~~~~~~~~~~~~~g~f~i~~~l~~~G------~~~~-~~v~~~v~~~l~ 414 (657)
.+|+++||++.+++|++.||++||+|+++ +++.... ..+.|.|.+...+.+ .+++ +++.++|.++|+
T Consensus 417 ~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~-----~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~ 491 (1193)
T 3s5m_A 417 LIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSL-----VQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALK 491 (1193)
T ss_dssp HHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSS-----SSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHhcCCeeeeccccccccc-----CCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHH
Confidence 99999999998999999999889999997 4554322 234888887544321 2346 799999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHhhhhhccCCChh--HHHHHHHHhc-CCCCCccccccccccccCC------HHHHHHHHhh
Q 006184 415 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQD--DYAAELAGNL-LIYPAEHVIYGEYMYEVWD------EEMIKHLLGF 485 (657)
Q Consensus 415 ~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~--~~~~~la~~l-~~~~~~~~l~~~~~i~~vt------~edI~~~~~~ 485 (657)
.|+++|+++++++++++.+..+++......+. .++..++..+ ....|...+.+...++.+. +..+++++++
T Consensus 492 ~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~ 571 (1193)
T 3s5m_A 492 KVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEK 571 (1193)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 99999999999999999998887764333343 3333444333 3345666665555555444 4589999986
Q ss_pred -cCc-CceEEEEEeCC
Q 006184 486 -FMP-ENMRIDVVSKS 499 (657)
Q Consensus 486 -l~~-~n~~i~iv~~~ 499 (657)
|.. ....++++.|.
T Consensus 572 yll~n~~~~~~~~~P~ 587 (1193)
T 3s5m_A 572 HFINNAHRSVILLEGD 587 (1193)
T ss_dssp HTTTCCCEEEEEEEEE
T ss_pred HhccCCceEEEEEEcC
Confidence 543 34355566664
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=4.8e-47 Score=420.14 Aligned_cols=400 Identities=14% Similarity=0.115 Sum_probs=310.5
Q ss_pred cccceeEEecCCCEEEEEeCCCCCCCCCcccccCCCccccccccCccCcccccccccccccchhhhhcccccccccceEE
Q 006184 21 KRLYRVIELENRLCALLVHDPEIYADDSSKTLENNTEEDEETFDDEYEDDEYEDEEEDDENDTEKEVKGKGIFSQTKKAA 100 (657)
Q Consensus 21 ~~~y~~~~L~NGl~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (657)
++.++..+|+|||+|++++++.. + ...++
T Consensus 23 dp~~~~~~L~NGl~v~~~~~~~~------~---------------------------------------------~~~v~ 51 (492)
T 3go9_A 23 DPAWQQGKLDNGFSWQLLATPQR------P---------------------------------------------SDRIE 51 (492)
T ss_dssp CTTEEEEECTTSCEEEEEECTTS------T---------------------------------------------TSCEE
T ss_pred CCCeEEEECCCCCEEEEEECCCC------C---------------------------------------------CCeEE
Confidence 45799999999999999998753 1 01899
Q ss_pred EEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHH----hcCCccceeeCCCceEEEEEeCh---hhHHH
Q 006184 101 AAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLS----KHGGSSNAYTETEHTCYHFEIKR---EFLKG 173 (657)
Q Consensus 101 ~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~----~~gg~~na~t~~e~t~~~~~~~~---~~l~~ 173 (657)
+.+.+++||..||.+..|+|||+|||+|.||++|+. .++.++++ .+||.+||+|+.++|+|++++++ ++++.
T Consensus 52 ~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~-~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~ 130 (492)
T 3go9_A 52 LRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTP-AQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKD 130 (492)
T ss_dssp EEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCH-HHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHH
T ss_pred EEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHH
Confidence 999999999999999999999999999999999998 68998766 48999999999999999999998 78999
Q ss_pred HHHHHHHhhhCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHH
Q 006184 174 ALMRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQI 253 (657)
Q Consensus 174 aL~~la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L 253 (657)
+|++|++++.+|.|+++++++||..+.++++...+++....+. ..+++.|+++++..+ ++|.+ +++++|
T Consensus 131 ~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~i~~------it~~dL 199 (492)
T 3go9_A 131 ALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSSLIGHDPGQ--PVTQP------VDVEKL 199 (492)
T ss_dssp HHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTSTTTTCCTTC--CCCSS------CCHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccCCcccCCCch--hhhhc------CCHHHH
Confidence 9999999999999999999999998888887666666544332 334555555554433 46766 999999
Q ss_pred HHHHHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCC
Q 006184 254 MKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCL 333 (657)
Q Consensus 254 ~~f~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~ 333 (657)
++||++||+|+||+|+|+||+++++++++|+++|+.||.+........ ..++.....+..+.....+..+.++|+.|..
T Consensus 200 ~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~ 278 (492)
T 3go9_A 200 KQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVA-TLAPLPPEPVSLMNEQAAQDTLSLMWDTPWH 278 (492)
T ss_dssp HHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCC-CCCCCCSSCEEEEESSCSSEEEEEEEEEECC
T ss_pred HHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCCCceEEEcCCCCCcEEEEEecCCCC
Confidence 999999999999999999999999999999999999997653221111 1122223344444445578899999999864
Q ss_pred c-hhh----hccHHHHHHHHhcCCCCChHHHHHHh---CCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHH
Q 006184 334 H-QEY----LKKSEDYLAHLLGHEGRGSLHSFLKG---RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDI 405 (657)
Q Consensus 334 ~-~~~----~~~~~~~l~~lLg~~~~~sL~~~LR~---~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v 405 (657)
. +++ +.....+++.+|| ++|+..||+ +|++|++++++.... +.|.|.+ .+.+ ++.+++
T Consensus 279 ~~~d~~~l~~~~~~~v~~~iLg----~~L~~~lre~~~~gl~y~~~s~~~~~~-----~~~~~~i--~~~~---~~~~~a 344 (492)
T 3go9_A 279 PIQDSMALSRYWRSDLAREALF----WHIKQVLEKNNQKNLKLGFDCRVQYQR-----AQCAIHL--NTPV---ENLTAN 344 (492)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHH----HHHHHHHHHSCCTTCEEEEEEEEETTE-----EEEEEEE--EECG---GGHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccccCchhhhhh-----cceEEEE--EcCc---ccHHHH
Confidence 2 221 2234589999999 599999984 799999998765421 2335555 4455 799999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhcc----CCChhHHHHHHHHhcC----CCCCcccccc-ccccccCCH
Q 006184 406 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAE----EQPQDDYAAELAGNLL----IYPAEHVIYG-EYMYEVWDE 476 (657)
Q Consensus 406 ~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~----~~~~~~~~~~la~~l~----~~~~~~~l~~-~~~i~~vt~ 476 (657)
++.+.++|+++++.|++++||+++|+.+..++.... ..++..++..+...+. ...++++... ...+.++|+
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999988876532 2334555666554332 1234454443 356899999
Q ss_pred HHHHHHHhh-cCcCceEEEEEeCC
Q 006184 477 EMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 477 edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
++|++++++ +.+ +..++++++.
T Consensus 425 edV~~~a~~~l~~-~~~~vvvg~~ 447 (492)
T 3go9_A 425 AELNRELKQQLSQ-DTTLVLMQPK 447 (492)
T ss_dssp HHHHHHHHHHHTS-CCEEEEEEET
T ss_pred HHHHHHHHHHhCC-CCeEEEEcCC
Confidence 999999997 665 4566777764
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=8.6e-38 Score=331.17 Aligned_cols=329 Identities=11% Similarity=0.050 Sum_probs=261.0
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
.+.+++.+++|+..++ ..|+|||+|||+|+||++|+. .++.+.++.+||++||+|+.++|+|++++++++++.+|++
T Consensus 12 ~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~-~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~l 88 (352)
T 3cx5_B 12 ISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSA-LKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNA 88 (352)
T ss_dssp EEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCH-HHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHH
T ss_pred eEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCH-HHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHH
Confidence 9999999999999863 789999999999999999997 7999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCChHHHH-HHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHH
Q 006184 178 FSQFFISPLMKVEAME-REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (657)
Q Consensus 178 la~~~~~P~f~~~~~e-~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f 256 (657)
+++++.+|.|++++++ ++++.+.+|+++..++|..++.+.+...+|+ |||+++.. .++|.+ +++++|++|
T Consensus 89 l~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~------it~~~l~~f 159 (352)
T 3cx5_B 89 LADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVER------VSLQDIKDF 159 (352)
T ss_dssp HHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSC------CCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhcc------CCHHHHHHH
Confidence 9999999999999998 9999999999998999999999999999997 99998875 678887 999999999
Q ss_pred HHhhccCCccEEEEEcCCCHHHHHHHH-HHHhccccCCCCCCCCCcccccccccceEEEEeecCcccEEEEEEEcCCCch
Q 006184 257 YMNYYQGGLMKLVVIGGEPLDTLQSWV-VELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQ 335 (657)
Q Consensus 257 ~~~~y~~~~m~lvIvG~~~~d~l~~lv-~~~f~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~f~~p~~~~ 335 (657)
|+++|+|+||+|+|+| ++++++.+++ +++|+.||.+..+.+.. ..+++..+.. .+ +...+..+.++++..
T Consensus 160 ~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---- 230 (352)
T 3cx5_B 160 ADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVSKS--EPKFFLGEEN-RV-RFIGDSVAAIGIPVN---- 230 (352)
T ss_dssp HHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCCCS--CCCCCCSCEE-EE-ECSSSEEEEEEEEEC----
T ss_pred HHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCCCC--CCCCccCCeE-EE-ecCCCceEEEecCCC----
Confidence 9999999999999999 9999999999 89999998655332211 1122222222 23 233555555554432
Q ss_pred hhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHH
Q 006184 336 EYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIK 414 (657)
Q Consensus 336 ~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~ 414 (657)
+.+..++.+++.+||+ .|| ++|++ ++++.... .+.|.|.|++.+. +.+++.+.+.+.++
T Consensus 231 ~~~~~~l~vl~~iLg~--------~lre~~gl~--~~~~~~~~-----~~~g~~~i~~~~~-----~~~~~~~~i~~~l~ 290 (352)
T 3cx5_B 231 KASLAQYEVLANYLTS--------ALSELSGLI--SSAKLDKF-----TDGGLFTLFVRDQ-----DSAVVSSNIKKIVA 290 (352)
T ss_dssp TTTHHHHHHHHHHHHS--------TTSTTGGGC--SEEEEEEE-----TTEEEEEEEEEES-----CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCc--------chhcccCce--EEEeecCc-----CcceeEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 2255789999999995 567 78887 44444321 1356999999874 34555555555543
Q ss_pred HHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhhcCcCceEEE
Q 006184 415 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRID 494 (657)
Q Consensus 415 ~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~l~~~n~~i~ 494 (657)
.++++++++++|+.+..++..+.+. + ..+.++ .|++||.+ +| +++.++
T Consensus 291 ----~~~t~~el~~ak~~~~~~~~~~~~~-~-------------~~~~~~-----~i~~vt~~-------~~--~~~~~~ 338 (352)
T 3cx5_B 291 ----DLKKGKDLSPAINYTKLKNAVQNES-V-------------SSPIEL-----NFDAVKDF-------KL--GKFNYV 338 (352)
T ss_dssp ----HHHSCEECGGGHHHHHHHHHHHCCS-T-------------TCCCCS-----CGGGCCEE-------CC--CSCEEE
T ss_pred ----hcCCHHHHHHHHHHHHHHHHhhhhc-c-------------CCccce-----eeeeeeHh-------hc--CCceEE
Confidence 4589999999999999988765442 1 011111 48888822 25 899999
Q ss_pred EEeCC
Q 006184 495 VVSKS 499 (657)
Q Consensus 495 iv~~~ 499 (657)
++||.
T Consensus 339 ~~G~~ 343 (352)
T 3cx5_B 339 AVGDV 343 (352)
T ss_dssp EEESG
T ss_pred EEccc
Confidence 99984
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.96 E-value=6.2e-28 Score=289.62 Aligned_cols=370 Identities=8% Similarity=-0.039 Sum_probs=275.2
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhc-cCCcCCCChhHHHHHHHhcCCccce-----eeCC-----CceEEEEEe
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLF-MGSTEFPDENEYDSYLSKHGGSSNA-----YTET-----EHTCYHFEI 166 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf-~Gs~~~~~~~~~~~~l~~~gg~~na-----~t~~-----e~t~~~~~~ 166 (657)
.+.+.+.+++|+. |.+..|+++++.+|++ +|+++|+. .++.+.++.+.|.+++ .++. +.+.|++++
T Consensus 574 ~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~-~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~ 650 (995)
T 2fge_A 574 IIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTF-VQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKS 650 (995)
T ss_dssp EEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCH-HHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred eEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhcCceEeeccccccCccccccceEEEEEEE
Confidence 9999999999987 4556788888888888 59999996 6999999966555666 6655 889999999
Q ss_pred ChhhHHHHHHHHHHhhhCCCCChH-HHHHHHHHHHHHHHhccC-CHHHHHHHHHHhhCCCCCCCCCCCCC--Ch------
Q 006184 167 KREFLKGALMRFSQFFISPLMKVE-AMEREVLAVDSEFNQALQ-NDACRLQQLQCHTSQLGHAFNKFFWG--NK------ 236 (657)
Q Consensus 167 ~~~~l~~aL~~la~~~~~P~f~~~-~~e~e~~~v~~E~~~~~~-~~~~~~~~~~~~~~~~~hp~~~~~~G--~~------ 236 (657)
.+++++.+|+++++++.+|.|+++ .|+++++.+.+++++... ++...+...+...++++|+|+....| ..
T Consensus 651 l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l 730 (995)
T 2fge_A 651 MAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTL 730 (995)
T ss_dssp EGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHH
Confidence 999999999999999999999999 999999999999998875 55565677777777777777544322 11
Q ss_pred -----hhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCC-HHHHHHHHHHHhccc-cCCCCCCCCCccccccccc
Q 006184 237 -----KSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP-LDTLQSWVVELFANV-RKGPQIKPQFTVEGTIWKA 309 (657)
Q Consensus 237 -----etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~-~d~l~~lv~~~f~~i-p~~~~~~~~~~~~~~~~~~ 309 (657)
+.+.. + .++|++||+++|++++|+++|+|+++ .+++.++++++|+.+ |....+..... .+...
T Consensus 731 ~~~~~e~~~~------i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~---~~~~~ 800 (995)
T 2fge_A 731 EKKVDEDWEG------I-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWD---GRLPL 800 (995)
T ss_dssp HHHHHHCHHH------H-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSCCCC---CCCCC
T ss_pred HHhhhcCHHH------H-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCCccc---ccCCc
Confidence 22333 6 99999999999999999999999999 499999999999999 76443221110 01111
Q ss_pred ceEEEEeecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEE
Q 006184 310 CKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFV 389 (657)
Q Consensus 310 ~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~ 389 (657)
.......| .....+..+++... ..+.+..++.+++.+||+ +.|+..||.+|++|+++++... .|.|.
T Consensus 801 ~~~~~~~~-~~v~~~~~~~~~~~-~~~~d~~al~vl~~iLg~---~~L~~~iRe~g~aYg~~s~~~~--------~G~~~ 867 (995)
T 2fge_A 801 RNEAIVIP-TQVNYVGKAGNIYS-TGYELDGSAYVISKHISN---TWLWDRVRVSGGAYGGFCDFDS--------HSGVF 867 (995)
T ss_dssp CCEEEECS-CSSBEEEEEEEGGG-GTCCCCTHHHHHHHHHHH---THHHHHTTTTTCCSEEEEEEET--------TTTEE
T ss_pred cceEEEec-CceEEEEEecCCCC-CCCcccHHHHHHHHHHCC---CccHHHhhhcCCCcccceEeCC--------CccEE
Confidence 11111222 22334444554332 233466899999999997 6888999999999999998654 13677
Q ss_pred -EEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHH-HhcCCCCCcccccc
Q 006184 390 -MSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELA-GNLLIYPAEHVIYG 467 (657)
Q Consensus 390 -i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la-~~l~~~~~~~~l~~ 467 (657)
++...++ +.++.++.+.+.++.|+..++++++++++|..+...+.. ..++...+.... ..+...+.+..-..
T Consensus 868 ~~~s~~dp----~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~ 941 (995)
T 2fge_A 868 SYLSYRDP----NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDS--YQLPDAKGYSSLLRHLLGVTDEERQRK 941 (995)
T ss_dssp EEEEESBS----CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EEEEEcCC----CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHcCcCHHHHHHH
Confidence 6666655 567788888888888888899999999999998888732 234554444332 22334444434344
Q ss_pred ccccccCCHHHHHHHHhh-cCc-CceEEEEEeCC
Q 006184 468 EYMYEVWDEEMIKHLLGF-FMP-ENMRIDVVSKS 499 (657)
Q Consensus 468 ~~~i~~vt~edI~~~~~~-l~~-~n~~i~iv~~~ 499 (657)
...|.++|++||++++++ +.+ ++..++++|+.
T Consensus 942 ~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~ 975 (995)
T 2fge_A 942 REEILTTSLKDFKDFAQAIDVVRDKGVAVAVASA 975 (995)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCH
Confidence 567999999999999987 555 68889999975
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.96 E-value=4.7e-27 Score=280.52 Aligned_cols=368 Identities=9% Similarity=-0.015 Sum_probs=270.5
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
++.+.+.+..|...++....|+++++.+|+..|+.++ .+...+. |..++..+ .+...+.+++.+++++.+|++
T Consensus 524 ~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~----~~~~~l~--G~~~~~~~-~~g~~~~~~g~~~~l~~~l~l 596 (939)
T 1q2l_A 524 KADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL----SNQASVG--GISFSTNA-NNGLMVNANGYTQRLPQLFQA 596 (939)
T ss_dssp EEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH----HHHHHHT--TEEEEEEE-SSEEEEEEEEESSSHHHHHHH
T ss_pred cEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH----hhHHHHc--CcEEEEee-CCcEEEEEEcccHhHHHHHHH
Confidence 7788888888877776666799999999999887665 4555444 66667777 888999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHH
Q 006184 178 FSQFFISPLMKVEAMEREVLAVDSEFNQAL-QNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (657)
Q Consensus 178 la~~~~~P~f~~~~~e~e~~~v~~E~~~~~-~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f 256 (657)
+.+.+.+|.|+++.|+++++.+..++++.. ++|...+.+.+..+++++ + ....|..+.|.. ++.++|++|
T Consensus 597 l~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~--~-~~~~~~~~~l~~------it~~~l~~f 667 (939)
T 1q2l_A 597 LLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP--Y-FSRDERRKILPS------ITLKEVLAY 667 (939)
T ss_dssp HHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS--C-CCHHHHHHHGGG------CCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC--C-CCHHHHHHHHhc------CCHHHHHHH
Confidence 999999999999999999999999999874 568888888888888864 2 334478888888 999999999
Q ss_pred HHhhccCCccEEEEEcCCCHHHHHHHHHHHhccccCCCCCCCCCcccccccccc-eEEEEeecC-cccEE-EEEEEcCCC
Q 006184 257 YMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKAC-KLFRLEAVK-DVHIL-DLTWTLPCL 333 (657)
Q Consensus 257 ~~~~y~~~~m~lvIvG~~~~d~l~~lv~~~f~~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l-~i~f~~p~~ 333 (657)
|+++|++.+++++|+||++.+++.++++++|+.++.+........ . +....+ ......+.. .++.+ .+.|+.+..
T Consensus 668 ~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (939)
T 1q2l_A 668 RDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNK-D-VVVDKKQSVIFEKAGNSTDSALAAVFVPTGYD 745 (939)
T ss_dssp HHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCE-E-ECCCSCEEEEEEECCSSSCEEEEEEEECSSCC
T ss_pred HHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccc-e-EEeCCCceEEEecCCCCCCceeEEEEEecCCC
Confidence 999999999999999999999999999999999986432211110 0 111122 222222222 34444 566665532
Q ss_pred chhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccE-EEEEE-EeCccccccHHHHHHHHH
Q 006184 334 HQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYI-FVMSI-HLTDSGLEKIFDIIGFVY 410 (657)
Q Consensus 334 ~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~-f~i~~-~l~~~G~~~~~~v~~~v~ 410 (657)
. ....++..+||+...++|+..|| ++||+|+++++...... ..|+ |.|+. .+.+ ++++++++.+.
T Consensus 746 ~-----~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~----~~g~~~~i~s~~~~p---~~~~~~i~~~~ 813 (939)
T 1q2l_A 746 E-----YTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGR----QWGMGFLLQSNDKQP---SFLWERYKAFF 813 (939)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETT----EEEEEEEEEESSSCH---HHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCC----eeEEEEEEECCCCCH---HHHHHHHHHHH
Confidence 1 23344555666666689999999 99999999998753211 2233 66665 5566 79999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhH----HHHHHHHhcCCCCCccccccccccccCCHHHHHHHHhh-
Q 006184 411 QYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD----YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGF- 485 (657)
Q Consensus 411 ~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~----~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~~~- 485 (657)
+.+..+. .++++++|+++|+.+..++....+ +... +|..+.. ..++.+........++++|++||++++++
T Consensus 814 ~~~~~~~-~~~t~~el~~~k~~l~~~~~~~~~-s~~~~~~~~w~~i~~--~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~ 889 (939)
T 1q2l_A 814 PTAEAKL-RAMKPDEFAQIQQAVITQMLQAPQ-TLGEEASKLSKDFDR--GNMRFDSRDKIVAQIKLLTPQKLADFFHQA 889 (939)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHHHHHHTCCCS-SHHHHHHHHHHHHHH--TCTTCCHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhc--CCCCCChHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999876 579999999999999988765443 2322 3333332 22333333344567999999999999987
Q ss_pred cC-cCceEEE--EEeCC
Q 006184 486 FM-PENMRID--VVSKS 499 (657)
Q Consensus 486 l~-~~n~~i~--iv~~~ 499 (657)
+. ++..+++ ++|+.
T Consensus 890 l~~~~~~~l~v~v~G~~ 906 (939)
T 1q2l_A 890 VVEPQGMAILSQISGSQ 906 (939)
T ss_dssp TTSCSSEEEEEEECCSS
T ss_pred hcCCCCCEEEEEEecCC
Confidence 54 5656555 66764
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.92 E-value=7.4e-24 Score=254.22 Aligned_cols=372 Identities=9% Similarity=-0.024 Sum_probs=271.5
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCCCceEEEEEeChhhHHHHHHH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTETEHTCYHFEIKREFLKGALMR 177 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~e~t~~~~~~~~~~l~~aL~~ 177 (657)
...+.+.+..|....+....|+++++..|+..+ +. +.++...+. |.++++.++.+...+.+++.+++++.+|++
T Consensus 542 ~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~-~~~~~~~l~--G~~~~~~~~~~~~~~~~~g~~~~l~~~l~l 615 (990)
T 3cww_A 542 KANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LN-EYAYAAELA--GLSYDLQNTIYGMYLSVKGYNDKQPILLKK 615 (990)
T ss_dssp EEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HH-HHHHHHHHT--TEEEEEEEETTEEEEEEEEESTTHHHHHHH
T ss_pred cEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HH-HhhhHHHhC--CeEEEEEEcCCeEEEEEEeccHhHHHHHHH
Confidence 666666665555555666778999999998764 32 357777773 778899999999999999999999999999
Q ss_pred HHHhhhCCCCChHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCccHHHHHHHH
Q 006184 178 FSQFFISPLMKVEAMEREVLAVDSEFNQALQ-NDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMKL 256 (657)
Q Consensus 178 la~~~~~P~f~~~~~e~e~~~v~~E~~~~~~-~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~~~~~L~~f 256 (657)
+.+.+.+|.|+++.|++.++.+..++++... +|...+...+..++++ ++|.. .+..+.|.. ++.++|++|
T Consensus 616 l~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~~~~~--~~~~~~l~~------lt~~~l~~~ 686 (990)
T 3cww_A 616 IIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE-VAWTK--DELKEALAD------VTLPRLKAF 686 (990)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-SCCCH--HHHHHHHTT------CCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCC-CCCCH--HHHHHHHhc------CCHHHHHHH
Confidence 9999999999999999999999999998887 7999988888888875 56542 356777777 899999999
Q ss_pred HHhhccCCccEEEEEcCCCHHHHHHH---HHHHhccccCCCCCCC-CC-cccccccccceE-EE--EeecCcccEEEEEE
Q 006184 257 YMNYYQGGLMKLVVIGGEPLDTLQSW---VVELFANVRKGPQIKP-QF-TVEGTIWKACKL-FR--LEAVKDVHILDLTW 328 (657)
Q Consensus 257 ~~~~y~~~~m~lvIvG~~~~d~l~~l---v~~~f~~ip~~~~~~~-~~-~~~~~~~~~~~~-~~--~~~~~~~~~l~i~f 328 (657)
|+++|++.++.++|+||++.+++.++ +.++|+.+|......+ .. .......+.+.. +. ..+...+..+.+++
T Consensus 687 ~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 766 (990)
T 3cww_A 687 IPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYY 766 (990)
T ss_dssp HHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEE
T ss_pred HHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEE
Confidence 99999999999999999999998888 7788988874311110 00 000001112222 12 23344555666667
Q ss_pred EcCCCchhhhccHHHHHHHHhcCCCCChHHHHHH-hCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHH
Q 006184 329 TLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIG 407 (657)
Q Consensus 329 ~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR-~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~ 407 (657)
..+... .....++.+++.+|. ++++..|| ++|++|+++++........ ...|.|+...+| +++++.++
T Consensus 767 ~~~~~~-~~~~~~l~ll~~il~----~~lf~~LRek~~lgY~v~s~~~~~~g~~---~~~~~vqs~~dp---~~~~~~i~ 835 (990)
T 3cww_A 767 QTDMQS-TSENMFLELFAQIIS----EPAFNTLRTKEQLGYIVFSGPRRANGIQ---GLRFIIQSEKPP---HYLESRVE 835 (990)
T ss_dssp EEEECC-HHHHHHHHHHHHHHH----HHHHHHHTTTTCCCSEEEEEEEEETTEE---EEEEEEEESSCH---HHHHHHHH
T ss_pred eCCCCC-HHHHHHHHHHHHHHH----HHHHHHHHhccCCcEEEEEEEEeeCCEE---EEEEEEeCCCCH---HHHHHHHH
Confidence 665322 235578999999997 79999999 8999999999775421111 012333444445 68999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhH----HHHHHHHhcCCCCCccccccccccccCCHHHHHHHH
Q 006184 408 FVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD----YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLL 483 (657)
Q Consensus 408 ~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~----~~~~la~~l~~~~~~~~l~~~~~i~~vt~edI~~~~ 483 (657)
.+.+.+..+.. ++++++|+++|+.+..++.....+ ... ++..+.. ..+..+........+.++|++||++++
T Consensus 836 ~f~~~~~~l~~-~~te~el~~~k~~li~~~~~~~~~-~~~~~~~~~~~i~~--~~~~~d~~~~~~~~i~~vT~~di~~~a 911 (990)
T 3cww_A 836 AFLITMEKSIE-DMTEEAFQKHIQALAIRRLDKPKK-LSAESAKYWGEIIS--QQYNFDRDNTEVAYLKTLTKADIIKFY 911 (990)
T ss_dssp HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHCCCSS-HHHHHHHHHHHHHT--TCCCTTHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc--CCCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 99999999888 899999999999988887643332 322 3333332 222333333334568999999999999
Q ss_pred hh-cCc-----CceEEEEEeCC
Q 006184 484 GF-FMP-----ENMRIDVVSKS 499 (657)
Q Consensus 484 ~~-l~~-----~n~~i~iv~~~ 499 (657)
++ +.+ .++.++++|+.
T Consensus 912 ~~~l~~~~~~~~~~~v~v~g~~ 933 (990)
T 3cww_A 912 KEMLAVDAPRRHKVSVHVLARE 933 (990)
T ss_dssp HHHTSTTCTTCEEEEEEEECTT
T ss_pred HHHhhccCCCCCEEEEEEECCC
Confidence 97 675 67778888875
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.88 E-value=4.7e-22 Score=236.99 Aligned_cols=379 Identities=10% Similarity=0.011 Sum_probs=261.8
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhc-cCCcCCCChhHHHHHHHhcCCccceeeC----------------CCce
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLF-MGSTEFPDENEYDSYLSKHGGSSNAYTE----------------TEHT 160 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf-~Gs~~~~~~~~~~~~l~~~gg~~na~t~----------------~e~t 160 (657)
.+.+.+.+..|... .+..++..++..+|. +||++++. .++.+.+..++|.+++.++ ..+.
T Consensus 739 IvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy-~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 739 IVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSS-EDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp EEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCH-HHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred eEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 99999999999754 445566677666664 79999998 6999999999999887763 1224
Q ss_pred EEEEEeChhhHHHHHHHHHHhhhCCCCChHH-HHHHHHHHHHHHHhccCC-HHHHHHHHHHhhCCCCCCCCCCCCCChhh
Q 006184 161 CYHFEIKREFLKGALMRFSQFFISPLMKVEA-MEREVLAVDSEFNQALQN-DACRLQQLQCHTSQLGHAFNKFFWGNKKS 238 (657)
Q Consensus 161 ~~~~~~~~~~l~~aL~~la~~~~~P~f~~~~-~e~e~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G~~et 238 (657)
.+.+.+..++++.+++++.+++.+|.|++.. +...+..+.+.+++...+ ....+.....+.+.+.++|.....| .+.
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~G-l~~ 894 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYG-YEN 894 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHS-HHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCC-hHH
Confidence 6777899999999999999999999999875 666666667766665543 3334555555555566665443333 333
Q ss_pred hhhh-------hhcCccHHHHHHHHHHhhccCCccEEEEEcCCC-HHHHHHHHHHHhccccC----CCC---------CC
Q 006184 239 LIGA-------MEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP-LDTLQSWVVELFANVRK----GPQ---------IK 297 (657)
Q Consensus 239 L~~~-------~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~-~d~l~~lv~~~f~~ip~----~~~---------~~ 297 (657)
+.-- ...-....++|+++|++.++++||.+.|+|+.+ .+++.+.+++.|+.++. ... ..
T Consensus 895 ~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 974 (1193)
T 3s5m_A 895 YLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVND 974 (1193)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCC
T ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccccccccccccccccc
Confidence 3210 000012378999999999999999999999986 57888777777776642 110 00
Q ss_pred CC---Ccc--c-cccc---ccceEEEEeecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcc
Q 006184 298 PQ---FTV--E-GTIW---KACKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWAT 368 (657)
Q Consensus 298 ~~---~~~--~-~~~~---~~~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~y 368 (657)
+. ... . ...+ .........| ..+..+..+++..... +.+..++.+++++||+ ++|+.+||++|.+|
T Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~p-~~v~yv~~~~~~~~~~-~~d~~al~Vl~~iLg~---~~L~~eIREkgGAY 1049 (1193)
T 3s5m_A 975 PTVMGWNEEIKSKKLFDEEKVKKEFFVLP-TFVNSVSMSGILFKPG-EYLDPSFTVIVAALKN---SYLWDTVRGLNGAY 1049 (1193)
T ss_dssp CCCCCHHHHHHHTTCCCTTCCEEEEEECC-CSSBEEEEEEECSCTT-CBCCTHHHHHHHHHHH---THHHHHHTTTTCCS
T ss_pred ccccccccccccccccccccccceeEecC-CcceEEEEEecCCCCC-CCchHHHHHHHHHHCc---cHHHHHHHhcCCee
Confidence 00 000 0 0000 1112222233 3456677777655433 2356899999999996 68999999666699
Q ss_pred eeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhhhhccCCChh
Q 006184 369 SISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQ--VSPQKWIFKELQDIGNMEFRFAEEQPQD 446 (657)
Q Consensus 369 sv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~--~~i~e~el~~~k~~~~~~f~~~~~~~~~ 446 (657)
++++++.. .|.|.++....| +..+.++.+.+.++.+++ ++++++|++++|..+..++. ...++.
T Consensus 1050 g~~s~~~~--------~G~f~~~syrdp----~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d--~p~~p~ 1115 (1193)
T 3s5m_A 1050 GVFADIEY--------DGSVVFLSARDP----NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID--KPRRGI 1115 (1193)
T ss_dssp EEEEEECT--------TSEEEEEEESBS----CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS--CCCCTH
T ss_pred EEEEeccC--------CCcEEEEEEeCC----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc--ccCChH
Confidence 99998651 247887766655 577888888888887776 69999999999999888864 233455
Q ss_pred HHHHHHHHh-cCCCCCccccccccccccCCHHHHHHHHhh-cCc---CceEEEEEeCC
Q 006184 447 DYAAELAGN-LLIYPAEHVIYGEYMYEVWDEEMIKHLLGF-FMP---ENMRIDVVSKS 499 (657)
Q Consensus 447 ~~~~~la~~-l~~~~~~~~l~~~~~i~~vt~edI~~~~~~-l~~---~n~~i~iv~~~ 499 (657)
..+..+... +...+.+..-.....|.++|++||++++++ +.+ +++.++++|+.
T Consensus 1116 ~~a~~~~~~~~~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~ 1173 (1193)
T 3s5m_A 1116 ELSKLSFLRLISNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTK 1173 (1193)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECH
T ss_pred HHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCH
Confidence 555554433 223333334445678999999999999997 666 57899999984
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.75 E-value=1.5e-17 Score=160.46 Aligned_cols=180 Identities=8% Similarity=-0.042 Sum_probs=143.3
Q ss_pred ceEEEEeecCcccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCChHHHHHHhCCCcceeeeeeCCCCCCccccccEEE
Q 006184 310 CKLFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFV 389 (657)
Q Consensus 310 ~~~~~~~~~~~~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~ 389 (657)
.+.+.+....++..+.++|++|.... .+..++.+++.+||++.+++|++.||++|++|+++++.... . +.|.|.
T Consensus 13 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~-~----~~g~~~ 86 (197)
T 3ih6_A 13 ERSVTLRRAGGTPLVAAMYHLPAAGS-PDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQ-L----DPGLAM 86 (197)
T ss_dssp ---------CCSCEEEEEEECCCTTS-TTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETT-S----SSCEEE
T ss_pred CEEEEEECCCCCceEEEEEecCCCCC-CcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccc-c----CCeEEE
Confidence 33333433457889999999997543 46789999999999999999999999779999999876532 2 356999
Q ss_pred EEEEeCccccc-cHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCCCCccccccc
Q 006184 390 MSIHLTDSGLE-KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGE 468 (657)
Q Consensus 390 i~~~l~~~G~~-~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~~~l~~~ 468 (657)
|++.+.+ + +.+++++.+.++|+.+++.|+++++|+++|+.+..++....+ ++..++..++.......+.......
T Consensus 87 i~~~~~~---~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~-~~~~~a~~l~~~~~~g~~~~~~~~~ 162 (197)
T 3ih6_A 87 FGAQLQP---GMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYA-DPEKVGVALSEAIASGDWRLFFLQR 162 (197)
T ss_dssp EEEECCT---TSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999988 5 699999999999999999999999999999999999877554 5777888887765543344455556
Q ss_pred cccccCCHHHHHHHHhh-cCcCceEEEEEeCC
Q 006184 469 YMYEVWDEEMIKHLLGF-FMPENMRIDVVSKS 499 (657)
Q Consensus 469 ~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~~ 499 (657)
..++++|+++|++++++ |.+++..+++++|+
T Consensus 163 ~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 163 DRVREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHTCCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHhCCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 78999999999999986 88999999999985
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=97.81 E-value=0.00036 Score=66.05 Aligned_cols=161 Identities=10% Similarity=-0.010 Sum_probs=108.2
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeC------CCceEEEEEeChh-h
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTE------TEHTCYHFEIKRE-F 170 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~------~e~t~~~~~~~~~-~ 170 (657)
...+.+.+.+.+..++. .. ...++.++|..|. .+ .+.+-|...|...++++. .-...+++.+.++ +
T Consensus 24 ~~~v~~~~~~~~~~~~d-~~-al~vl~~iLggg~---sS--rL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 24 TPLVAAMYHLPAAGSPD-FV-GLDLAATILADTP---SS--RLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp SCEEEEEEECCCTTSTT-HH-HHHHHHHHHHSST---TS--HHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CceEEEEEecCCCCCCc-HH-HHHHHHHHHcCCC---Cc--hHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 66677777766666542 22 3456667776543 22 344444445655444331 2233455566666 5
Q ss_pred HHHHHHHHHHhhh---CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCc
Q 006184 171 LKGALMRFSQFFI---SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGI 247 (657)
Q Consensus 171 l~~aL~~la~~~~---~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~ 247 (657)
++.+++.+...+. .-.++++++++.|+.+...+....+++..++..+....++ +.+. ...-..+.|.+
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~--~~~~~~~~i~~------ 167 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWR--LFFLQRDRVRE------ 167 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTT--HHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHH--HHHHHHHHHHh------
Confidence 8888877766554 3469999999999999999998889998888887777666 3331 11112344555
Q ss_pred cHHHHHHHHHHhhccCCccEEEEEcCC
Q 006184 248 NLQEQIMKLYMNYYQGGLMKLVVIGGE 274 (657)
Q Consensus 248 ~~~~~L~~f~~~~y~~~~m~lvIvG~~ 274 (657)
+|.++++++.++|+.+++++++++|+.
T Consensus 168 vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 168 AKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp CCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred CCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 999999999999999999999999874
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.50 E-value=0.00089 Score=71.36 Aligned_cols=162 Identities=8% Similarity=-0.020 Sum_probs=107.7
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHH-HhcCCccceeeC------CCceEEEEEeChhh
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYL-SKHGGSSNAYTE------TEHTCYHFEIKREF 170 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l-~~~gg~~na~t~------~e~t~~~~~~~~~~ 170 (657)
.+.+.+.+.+....+|. .....++.++|..|. .+ .+.+.| ++.|+...+++. .-...+++.+.+++
T Consensus 234 q~~v~~~~~~~~~~~~d--~~~l~vl~~iLgg~~---~s--rL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (421)
T 3hdi_A 234 QAHLCLGYPGLPIGDKD--VYALVLLNNVLGGSM---SS--RLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ 306 (421)
T ss_dssp EEEEEEEEECCCTTCTT--HHHHHHHHHHHTSSS---SS--HHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGG
T ss_pred ceEEEEEEecCCCCCch--HHHHHHHHHHhCCCc---cc--HHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHH
Confidence 67777777765554442 233456667765442 22 344444 456765554332 22234555677778
Q ss_pred HHHHHHHHHHhhh---CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCc
Q 006184 171 LKGALMRFSQFFI---SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGI 247 (657)
Q Consensus 171 l~~aL~~la~~~~---~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~ 247 (657)
.+.+++.+.+.+. .-.++++++++.|..+...+....+++..++..+....++.+.+... .--.+.|.+
T Consensus 307 ~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~------ 378 (421)
T 3hdi_A 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSL--DEMIEQINA------ 378 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCH--HHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHc------
Confidence 8888877766554 44699999999999999999988899888777665544443323211 112344555
Q ss_pred cHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 248 NLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 248 ~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
+|.++|+++.++++ +++++++++|+.+
T Consensus 379 vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 379 VQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp CCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred CCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 99999999999999 9999999999864
No 25
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.38 E-value=0.0013 Score=69.62 Aligned_cols=161 Identities=11% Similarity=-0.048 Sum_probs=109.3
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeC----C--CceEEEEEeChhhH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTE----T--EHTCYHFEIKREFL 171 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~----~--e~t~~~~~~~~~~l 171 (657)
.+.+.+.+.+-...+|. . -...++.++|..|. .+ .+.+.|...|....+++. . -...+++.+.+++.
T Consensus 235 q~~~~~~~~~~~~~~~d-~-~~l~vl~~iLgg~~---~s--rL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (406)
T 3eoq_A 235 ALYLVALFPGVAYQEEA-R-FPGQVLAHLLGEEG---SG--RLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARK 307 (406)
T ss_dssp SEEEEEEEECCCTTCTT-H-HHHHHHHHHHHCTT---TS--HHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGH
T ss_pred ceEEEEEecCCCCCCch-H-HHHHHHHHHhCCCc---ch--HHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchH
Confidence 66777777655565553 2 23455666665442 22 455555556654443322 1 23445567788888
Q ss_pred HHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCcc
Q 006184 172 KGALMRFSQFFIS---PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGIN 248 (657)
Q Consensus 172 ~~aL~~la~~~~~---P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~ 248 (657)
+.+++.+.+.+.. -.++++++++.|+.+...+....+++..++..+....++.+.+... .--.+.|.+ +
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~------v 379 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSL--EEVKARVQR------V 379 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHh------C
Confidence 8888877666543 3599999999999999999998999988887777666654433221 112344555 9
Q ss_pred HHHHHHHHHHhhccCCccEEEEEcCC
Q 006184 249 LQEQIMKLYMNYYQGGLMKLVVIGGE 274 (657)
Q Consensus 249 ~~~~L~~f~~~~y~~~~m~lvIvG~~ 274 (657)
|.++++++.++++.++++ ++++|+.
T Consensus 380 t~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 380 TSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp CHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred CHHHHHHHHHHhcCcccE-EEEECCC
Confidence 999999999999999999 9999975
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.33 E-value=0.0027 Score=67.56 Aligned_cols=166 Identities=8% Similarity=-0.059 Sum_probs=106.6
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCc------CCCChhHHHHHHHhcCCccceeeC------CCceEEEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGST------EFPDENEYDSYLSKHGGSSNAYTE------TEHTCYHFE 165 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~------~~~~~~~~~~~l~~~gg~~na~t~------~e~t~~~~~ 165 (657)
.+.+.+.+.+....++. .....++.+++..|+. .+.+ -+.+.|...|+...++.. .....+++.
T Consensus 232 ~~~v~~~~~~~~~~~~~--~~~~~vl~~iL~~~~~~~~~~~~~~s--~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~ 307 (431)
T 3cx5_A 232 KAWISLAVEGEPVNSPN--YFVAKLAAQIFGSYNAFEPASRLQGI--KLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTA 307 (431)
T ss_dssp SEEEEEEEECCCTTCTT--HHHHHHHHHHHCEEETTCTTGGGSSC--THHHHHHTTTCCSEEEEEEEECSSCEEEEEEEE
T ss_pred ceEEEEEeecCCCCCcc--HHHHHHHHHHcCCCccCCCCcccccc--HHHHHHHhcCceeeEeEeecccCCCceEEEEEe
Confidence 66677777655554432 2334567777764321 1222 355556666765544432 223345556
Q ss_pred eCh-hhHHHHHHHHHHhhhCC--CCChHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh
Q 006184 166 IKR-EFLKGALMRFSQFFISP--LMKVEAMEREVLAVDSEFNQ--ALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI 240 (657)
Q Consensus 166 ~~~-~~l~~aL~~la~~~~~P--~f~~~~~e~e~~~v~~E~~~--~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~ 240 (657)
+.+ ++++.+++.+...+..- .++++++++.|..+...+.. ..+++...+..+....+..+.+.. ..--.+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~ 385 (431)
T 3cx5_A 308 TRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--LGEAFKKID 385 (431)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--HHHHHHHHH
T ss_pred eCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHh
Confidence 666 77777776665443321 59999999999999999998 788888777666654332122322 111234455
Q ss_pred hhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 241 GAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 241 ~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
. ++.++|+++.++++.+++++++++|+.+
T Consensus 386 ~------vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 386 A------ITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp H------CCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred c------CCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 5 8999999999999999999999999865
No 27
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.27 E-value=0.0029 Score=67.42 Aligned_cols=165 Identities=13% Similarity=0.033 Sum_probs=105.5
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHHhcCCccceeeCC------CceEEEEEeChhhH
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLSKHGGSSNAYTET------EHTCYHFEIKREFL 171 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~~~gg~~na~t~~------e~t~~~~~~~~~~l 171 (657)
.+.+.+...+....++. .....++.++|..| ...+ .-+...-++.|+...+++.. -...+++.+.+++.
T Consensus 249 ~~~v~~~~~~~~~~~~d--~~~l~vl~~iLg~~--~~~s-~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~ 323 (434)
T 3gwb_A 249 QTSLMLAQLGIDRDDPD--YAAVSLGNQILGGG--GFGT-RLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMS 323 (434)
T ss_dssp EEEEEEEEECCBTTCTT--HHHHHHHHHHHHSS--SSCS-HHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGH
T ss_pred ceeEEecCcCCCCCCcc--hHHHHHHHHHhCCC--cccc-hhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhH
Confidence 66677766655555443 23445566665433 1122 23333334456655444332 23445667778777
Q ss_pred HHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCcc
Q 006184 172 KGALMRFSQFFIS---PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGIN 248 (657)
Q Consensus 172 ~~aL~~la~~~~~---P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~ 248 (657)
+.+++.+.+.+.. -.++++++++.|..+...+....+++...+..+.....++. ++... .--.+.|.+ +
T Consensus 324 ~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~------v 395 (434)
T 3gwb_A 324 EGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNL-PLSYL-EDFMRQSQE------L 395 (434)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTC-CTTHH-HHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCC-CccHH-HHHHHHHHh------C
Confidence 7777777666543 45899999999999999999888899888877776655532 32211 112344555 9
Q ss_pred HHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 249 LQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 249 ~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
|.++|+++.++++.+++++++++|+..
T Consensus 396 t~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 396 TVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp CHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred CHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 999999999999999999999999754
No 28
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.21 E-value=0.0074 Score=64.54 Aligned_cols=167 Identities=8% Similarity=0.020 Sum_probs=107.5
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhcc-----CCcCCCChhHHHHHHH-hcCCccceee------CCCceEEEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFM-----GSTEFPDENEYDSYLS-KHGGSSNAYT------ETEHTCYHFE 165 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~-----Gs~~~~~~~~~~~~l~-~~gg~~na~t------~~e~t~~~~~ 165 (657)
.+.+++.+.+....++. .....++.++|.. |..++.. .-+.+.+. +.|+...++. +.....+++.
T Consensus 246 ~~~v~~~~~~~~~~~~~--~~~l~vl~~iLg~~~r~~~~g~~~~-s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~ 322 (443)
T 1hr6_B 246 TTHIAIALEGVSWSAPD--YFVALATQAIVGNWDRAIGTGTNSP-SPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIV 322 (443)
T ss_dssp EEEEEEEEECCCTTCTT--HHHHHHHHHHHCEEETTTBCSSSSC-CHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEE
T ss_pred ceEEEEEEecCCCCCcc--HHHHHHHHHHhCCCcccCCCCCCcc-cHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEE
Confidence 77777777765554442 2334456777743 1222222 24555555 6665543322 2223345556
Q ss_pred eC--hhhHHHHHHHHHHhh---hCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhh
Q 006184 166 IK--REFLKGALMRFSQFF---ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLI 240 (657)
Q Consensus 166 ~~--~~~l~~aL~~la~~~---~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~ 240 (657)
+. +++++.+++.+.+.+ ..-.++++++++.|..+...+....+++...+..+....+..+.+... .--.+.|.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~i~ 400 (443)
T 1hr6_B 323 TDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSP--EEVFEQVD 400 (443)
T ss_dssp EETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCH--HHHHHHHH
T ss_pred ecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCH--HHHHHHHH
Confidence 76 778888887776654 445599999999999999999988888877666665543222223221 11234455
Q ss_pred hhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 241 GAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 241 ~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
. +|.++++++.++++.+++++++++|+..
T Consensus 401 ~------vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 401 K------ITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp T------CCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred h------CCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 5 8999999999999999999999999753
No 29
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.17 E-value=0.0056 Score=65.01 Aligned_cols=164 Identities=16% Similarity=0.032 Sum_probs=106.0
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHH-hcCCccceeeCC------CceEEEEEeChhh
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLS-KHGGSSNAYTET------EHTCYHFEIKREF 170 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~-~~gg~~na~t~~------e~t~~~~~~~~~~ 170 (657)
.+.+.+.+.+....++. .....++.+++..| ... ..+.+.|. +.|....++... -...+++.+.+++
T Consensus 242 ~~~v~~~~~~~~~~~~~--~~~~~vl~~iLg~~--~~~--srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~ 315 (424)
T 3amj_B 242 QAHIAIGMPTLKRGDPD--FFPLVVGNYALGGG--GFE--SRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEK 315 (424)
T ss_dssp EEEEEEEEEEEBTTCTT--HHHHHHHHHHHTTS--GGG--SHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTT
T ss_pred ccEEEeeccCCCCCCcc--hHHHHHHHHHhCCC--Ccc--chhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCccc
Confidence 66777776654444432 23345566666433 112 23555554 466555443322 2234455666777
Q ss_pred HHHHHHHHHHhhh---CCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCc
Q 006184 171 LKGALMRFSQFFI---SPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGI 247 (657)
Q Consensus 171 l~~aL~~la~~~~---~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~ 247 (657)
.+.+++.+...+. .-.++++++++.|..+...+.....++...+..+.....++ .|+... .--.+.|..
T Consensus 316 ~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~------ 387 (424)
T 3amj_B 316 ADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYG-LPLDYL-DHYTERVQA------ 387 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTT-CCTTTT-TSHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcC-CChhHH-HHHHHHHHc------
Confidence 7777777665554 34599999999999999999888888887777666554443 343221 112455666
Q ss_pred cHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 248 NLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 248 ~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
++.++++++.++++.+++++++++|+..
T Consensus 388 vt~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 388 VTVEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp CCHHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred CCHHHHHHHHHHhcCccceEEEEECChh
Confidence 8999999999999999999999999864
No 30
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.08 E-value=0.0052 Score=66.60 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=106.3
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCC--------cCCCChhHHHHHHHhcCCccceee------CCCceEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGS--------TEFPDENEYDSYLSKHGGSSNAYT------ETEHTCYH 163 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs--------~~~~~~~~~~~~l~~~gg~~na~t------~~e~t~~~ 163 (657)
.+.+++.+.+....+|. . ....++.++|..|. +...+ .-+.....+.|....++. +.-...++
T Consensus 243 ~~~v~~~~~~~~~~~~d-~-~~l~vl~~iLg~~~~f~~gg~g~~~~s-~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 243 LFHIQIGFEGLPIDHPD-I-YALATLQTLLGGGGSFSAGGPGKGMYS-RLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CEEEEEEEECCCTTCTT-H-HHHHHHHHHHCEEESSCCSSTTSCTTS-HHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred ceEEEEEEecCCCCCcc-H-HHHHHHHHHhCCCcccccCCCCCCcCC-HHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 66777777754454442 2 22345677764321 11222 234444455665433322 22234566
Q ss_pred EEeChhhHHHHHHHHHHhhhC------CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChh
Q 006184 164 FEIKREFLKGALMRFSQFFIS------PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKK 237 (657)
Q Consensus 164 ~~~~~~~l~~aL~~la~~~~~------P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~e 237 (657)
+.+.++++..+++.+...+.. -.++++++++.|..+...+....+++..++..+....+..+.+... .--.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~ 397 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPV--NEMIS 397 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCH--HHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH--HHHHH
Confidence 677888899888887766654 2499999999999999999888888888777666544322333221 11233
Q ss_pred hhhhhhhcCccHHHHHHHHHHhhccC---------CccEEEEEcCC
Q 006184 238 SLIGAMEKGINLQEQIMKLYMNYYQG---------GLMKLVVIGGE 274 (657)
Q Consensus 238 tL~~~~~~~~~~~~~L~~f~~~~y~~---------~~m~lvIvG~~ 274 (657)
.|.. +|.++|+++.++++.+ .+++++++|+.
T Consensus 398 ~i~~------vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 398 KIED------LKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHT------CCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHc------CCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 4445 8999999999999988 58999999986
No 31
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.04 E-value=0.009 Score=64.01 Aligned_cols=165 Identities=8% Similarity=0.013 Sum_probs=106.9
Q ss_pred eEEEEEEecccCCCCCCCCCChHHHHHHHhccCC------cCCCChhHHHHHHHhcCCccceeeC----CC--ceEEEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGLAHFLEHMLFMGS------TEFPDENEYDSYLSKHGGSSNAYTE----TE--HTCYHFE 165 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Glah~lehmlf~Gs------~~~~~~~~~~~~l~~~gg~~na~t~----~e--~t~~~~~ 165 (657)
.+.+++...+....+|. .....++.++|..+. ....+ -+.+.+.+.|+...++.. .+ ...+++.
T Consensus 250 ~~~v~~~~~~~~~~~~d--~~al~vl~~iLg~~~~~~~~g~~~~s--rL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~ 325 (446)
T 1pp9_A 250 LAHVAIAVEGPGWAHPD--NVALQVANAIIGHYDCTYGGGAHLSS--PLASIAATNKLCQSFQTFNICYADTGLLGAHFV 325 (446)
T ss_dssp SEEEEEEEEECCTTCTH--HHHHHHHHHHHCEEETTCSCGGGCSS--HHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEE
T ss_pred ceEEEEEEecCCCCCcc--HHHHHHHHHHhCCCcccCCCCCCCCC--HHHHHHHhcCCeEEEEEecccCCCCeEEEEEEE
Confidence 66677776655555442 234456777775210 12222 455555566755433322 22 2345556
Q ss_pred eChhhHHHHHHHHHHhh---hCCCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhh
Q 006184 166 IKREFLKGALMRFSQFF---ISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGA 242 (657)
Q Consensus 166 ~~~~~l~~aL~~la~~~---~~P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~ 242 (657)
+.+++++.+++.+...+ ..+ ++++++++.|..+...+....+++..++..+....+..+.+... .--.+.|.+
T Consensus 326 ~~~~~~~~~~~~i~~~l~~l~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~i~~- 401 (446)
T 1pp9_A 326 CDHMSIDDMMFVLQGQWMRLCTS-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPL--AEWESRIAE- 401 (446)
T ss_dssp ECTTSHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCH--HHHHHHHHT-
T ss_pred ECHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCH--HHHHHHHHc-
Confidence 77778888877766544 334 99999999999999999888888887777665554222333221 111334445
Q ss_pred hhcCccHHHHHHHHHHhhccCCccEEEEEcCCC
Q 006184 243 MEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEP 275 (657)
Q Consensus 243 ~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~ 275 (657)
++.++++++.++++.+++++++++|+.+
T Consensus 402 -----vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 402 -----VDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp -----CCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred -----CCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 8999999999999999999999999864
No 32
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=96.88 E-value=0.02 Score=59.05 Aligned_cols=157 Identities=8% Similarity=-0.042 Sum_probs=94.6
Q ss_pred ccEEEEEEEcCCCchhhhccHHHHHHHHhcCCCCC----hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCc
Q 006184 321 VHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRG----SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTD 396 (657)
Q Consensus 321 ~~~l~i~f~~p~~~~~~~~~~~~~l~~lLg~~~~~----sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~ 396 (657)
...+.+.+..-..... ..-...++.+++..+... .+...|...|...+.+.+.. ...+++.+.+
T Consensus 12 ~v~~~~~~~~Gs~~e~-~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~-----------~t~~~~~~~~ 79 (352)
T 3cx5_B 12 ISTLAVKVHGGSRYAT-KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDRE-----------YITLKATFLK 79 (352)
T ss_dssp EEEEEEEESCSGGGCS-STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSS-----------CEEEEEEEEG
T ss_pred eEEEEEEEeeeccCCC-cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccc-----------eEEEEEEech
Confidence 3344444444333222 334568888988653322 25556666676544433211 3555666666
Q ss_pred cccccHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHhhhhhccCCChhHHHHHHHHh-cCCCCCccccccccccccC
Q 006184 397 SGLEKIFDIIGFVYQYIKLLRQVSPQKWIFK-ELQDIGNMEFRFAEEQPQDDYAAELAGN-LLIYPAEHVIYGEYMYEVW 474 (657)
Q Consensus 397 ~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~-~~k~~~~~~f~~~~~~~~~~~~~~la~~-l~~~~~~~~l~~~~~i~~v 474 (657)
++.+.+++.+.+.+. .-.+++++++ +.|.....++... ..++...+...... +...+..... ....++++
T Consensus 80 ---~~l~~~l~ll~d~~~---~p~f~~~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~p~~~~~-~~~~l~~i 151 (352)
T 3cx5_B 80 ---DDLPYYVNALADVLY---KTAFKPHELTESVLPAARYDYAVA-EQCPVKSAEDQLYAITFRKGLGNPL-LYDGVERV 151 (352)
T ss_dssp ---GGHHHHHHHHHHHHH---HBCCCHHHHHHTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTTTSCS-SCCSSSCC
T ss_pred ---hhHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCCCcc-chhhhccC
Confidence 677777777766654 3458899998 8888877776643 33465544332222 2111111111 14568999
Q ss_pred CHHHHHHHHhh-cCcCceEEEEEe
Q 006184 475 DEEMIKHLLGF-FMPENMRIDVVS 497 (657)
Q Consensus 475 t~edI~~~~~~-l~~~n~~i~iv~ 497 (657)
|.+++.++.++ +.|+|+.++++|
T Consensus 152 t~~~l~~f~~~~y~~~n~~l~v~G 175 (352)
T 3cx5_B 152 SLQDIKDFADKVYTKENLEVSGEN 175 (352)
T ss_dssp CHHHHHHHHHHHCCGGGEEEEEES
T ss_pred CHHHHHHHHHHhCCcCcEEEEEeC
Confidence 99999999986 999999999998
No 33
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=96.82 E-value=0.026 Score=60.09 Aligned_cols=160 Identities=9% Similarity=0.048 Sum_probs=97.6
Q ss_pred ccEEEEEEEcCCCch-hhhccHHHHHHHHhcCCCCC----hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeC
Q 006184 321 VHILDLTWTLPCLHQ-EYLKKSEDYLAHLLGHEGRG----SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLT 395 (657)
Q Consensus 321 ~~~l~i~f~~p~~~~-~~~~~~~~~l~~lLg~~~~~----sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~ 395 (657)
...+.+.|..+.... ....-...++.+++..+... .+...+...|..++++.+ . . ...+++.+.
T Consensus 44 ~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~--~-----~----~t~~~~~~~ 112 (439)
T 1pp9_B 44 ASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTST--R-----E----NMAYTVECL 112 (439)
T ss_dssp EEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEEC--S-----S----CEEEEEEEE
T ss_pred eEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEec--c-----e----EEEEEEEee
Confidence 344555555554322 12234557778877543221 355566666775544332 1 1 455666666
Q ss_pred ccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHHHh-cCCCCCcc-cccccccccc
Q 006184 396 DSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN-LLIYPAEH-VIYGEYMYEV 473 (657)
Q Consensus 396 ~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la~~-l~~~~~~~-~l~~~~~i~~ 473 (657)
+ ++.+.+++.+.+.+. .-.++++++++.|..+..++... ..++...+...... +...+... .......+++
T Consensus 113 ~---~~l~~~l~ll~~~~~---~p~f~~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 185 (439)
T 1pp9_B 113 R---DDVDILMEFLLNVTT---APEFRRWEVAALQPQLRIDKAVA-LQNPQAHVIENLHAAAYRNALANSLYCPDYRIGK 185 (439)
T ss_dssp G---GGHHHHHHHHHHHHH---CBCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHBSSGGGSCSSCCGGGTTT
T ss_pred h---hhHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHhcCCCCCCccCCHHHHhh
Confidence 6 677777777766554 34589999999999888876643 33465555433322 22111111 2223456889
Q ss_pred CCHHHHHHHHhh-cCcCceEEEEEeC
Q 006184 474 WDEEMIKHLLGF-FMPENMRIDVVSK 498 (657)
Q Consensus 474 vt~edI~~~~~~-l~~~n~~i~iv~~ 498 (657)
+|.++++++.++ +.++|+.++++|+
T Consensus 186 it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 186 VTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp CCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred cCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 999999999987 8999999999996
No 34
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=96.61 E-value=0.053 Score=57.89 Aligned_cols=172 Identities=11% Similarity=0.070 Sum_probs=100.3
Q ss_pred ceEEEEeecC--cccEEEEEEEcCCCch-hhhccHHHHHHHHhcCCC----CChHHHHHHhCCCcceeeeeeCCCCCCcc
Q 006184 310 CKLFRLEAVK--DVHILDLTWTLPCLHQ-EYLKKSEDYLAHLLGHEG----RGSLHSFLKGRGWATSISAGVGDEGMHRS 382 (657)
Q Consensus 310 ~~~~~~~~~~--~~~~l~i~f~~p~~~~-~~~~~~~~~l~~lLg~~~----~~sL~~~LR~~Gl~ysv~a~~~~~~~~~~ 382 (657)
|-.+.+.+.. +...+.+.+....... ....-...++.+++-.+. ...+...|...|.. +.++....
T Consensus 15 Gl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~--~na~t~~d----- 87 (445)
T 3ami_A 15 GLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGR--DNAFTTRD----- 87 (445)
T ss_dssp SCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCE--EEEEECSS-----
T ss_pred CCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCc--cccccCCC-----
Confidence 3333344433 3344555555444321 112334567888885432 23466777777764 44433321
Q ss_pred ccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhhhhccCCChhHHHHHHH-HhcCCCCC
Q 006184 383 SIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELA-GNLLIYPA 461 (657)
Q Consensus 383 ~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~~f~~~~~~~~~~~~~~la-~~l~~~~~ 461 (657)
...+++.+.+ ++.+.+++.+.+.+. .-.++++++++.|.....++......++...+.... ..+....+
T Consensus 88 ----~t~y~~~~~~---~~l~~~l~ll~d~~~---~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p 157 (445)
T 3ami_A 88 ----YTAYYQQVPS---SRLSDVMGLEADRMA---NLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHP 157 (445)
T ss_dssp ----CEEEEEEEEG---GGHHHHHHHHHHHHH---CBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSG
T ss_pred ----eEEEEEECCH---HHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCC
Confidence 2233444545 577777776665554 345899999999998888776333334555443333 32321111
Q ss_pred -cc-ccccccccccCCHHHHHHHHhh-cCcCceEEEEEeC
Q 006184 462 -EH-VIYGEYMYEVWDEEMIKHLLGF-FMPENMRIDVVSK 498 (657)
Q Consensus 462 -~~-~l~~~~~i~~vt~edI~~~~~~-l~~~n~~i~iv~~ 498 (657)
.. .+.....++++|.+++.++.++ +.|+|+.++++|+
T Consensus 158 ~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd 197 (445)
T 3ami_A 158 YRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGD 197 (445)
T ss_dssp GGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEES
T ss_pred CCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcC
Confidence 11 1222356788999999999986 8999999999997
No 35
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=96.13 E-value=0.075 Score=56.02 Aligned_cols=159 Identities=8% Similarity=-0.041 Sum_probs=101.1
Q ss_pred eEEEEEEeccc-CCCCCCCCCChHHHHHHHhccCCcCCCChhHHHHHHH-hcCCccceeeC----CCceEEEEEeChhhH
Q 006184 98 KAAAAMCVGMG-SFCDPVEAQGLAHFLEHMLFMGSTEFPDENEYDSYLS-KHGGSSNAYTE----TEHTCYHFEIKREFL 171 (657)
Q Consensus 98 ~~~~~l~v~~G-s~~dp~~~~Glah~lehmlf~Gs~~~~~~~~~~~~l~-~~gg~~na~t~----~e~t~~~~~~~~~~l 171 (657)
.+.+.+.+.++ ...++. .....++.+++..|. . ..+.+.|. +.|+...++.. .-...+++.+.++++
T Consensus 254 ~~~v~~~~~~~~~~~~~~--~~~~~vl~~iLg~~~----~-s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~ 326 (425)
T 3d3y_A 254 QSKLNLAYNTDIYYGDSY--YFALQVFNGIFGGFP----H-SKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNR 326 (425)
T ss_dssp SEEEEEEEECCCCTTSTT--HHHHHHHHHHHTTST----T-SHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGH
T ss_pred ccEEEEEeecCCCCCCch--HHHHHHHHHHhCCCh----h-hHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhH
Confidence 66777777765 344332 234566777775432 2 23444454 55765544432 233445566788888
Q ss_pred HHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhccCCHHHHHHHHHHhhCCCCCCCCCCCCCChhhhhhhhhcCcc
Q 006184 172 KGALMRFSQFFIS---PLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGIN 248 (657)
Q Consensus 172 ~~aL~~la~~~~~---P~f~~~~~e~e~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etL~~~~~~~~~ 248 (657)
+.+++.+...+.. -.++++++++.|..+...+....+++...+........+.+.+.. ..--.+.|.. +
T Consensus 327 ~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~------v 398 (425)
T 3d3y_A 327 NQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLT--AEEWIARINA------V 398 (425)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCC--HHHHHHHHHH------C
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHh------C
Confidence 8888777665443 459999999999999999988888888877776666655232321 1112334445 8
Q ss_pred HHHHHHHHHHhhccCCccEEEEEcC
Q 006184 249 LQEQIMKLYMNYYQGGLMKLVVIGG 273 (657)
Q Consensus 249 ~~~~L~~f~~~~y~~~~m~lvIvG~ 273 (657)
+.++|+++.+++ .++++. +++|+
T Consensus 399 t~edv~~~a~~~-~~~~~~-~v~g~ 421 (425)
T 3d3y_A 399 TIPEIQEVAKRL-ELQAIF-FLEGE 421 (425)
T ss_dssp CHHHHHHHHHHC-EEEEEE-EEEEE
T ss_pred CHHHHHHHHHhc-cCceEE-EEeCC
Confidence 999999999986 565554 55554
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=93.60 E-value=0.91 Score=49.05 Aligned_cols=172 Identities=6% Similarity=-0.040 Sum_probs=95.5
Q ss_pred eEEEEEEecccCCCCCCCCCCh-----HHHHHHHhccCCcCCCChhHHHHHHH---hcCCccceee----CCCceEEEEE
Q 006184 98 KAAAAMCVGMGSFCDPVEAQGL-----AHFLEHMLFMGSTEFPDENEYDSYLS---KHGGSSNAYT----ETEHTCYHFE 165 (657)
Q Consensus 98 ~~~~~l~v~~Gs~~dp~~~~Gl-----ah~lehmlf~Gs~~~~~~~~~~~~l~---~~gg~~na~t----~~e~t~~~~~ 165 (657)
...+.+...+.....|. ...+ ..++.++|+. .+...+. +.|-...++. ......|++.
T Consensus 266 q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg~---------~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~ 335 (492)
T 3go9_A 266 QDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALFW---------HIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLN 335 (492)
T ss_dssp SEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred CcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhccccccccCchhhhhhcceEEEEE
Confidence 56677766665544442 2222 2455556551 2333333 3443222222 2234467777
Q ss_pred eChhhHHHHHHHHHHhhhC---CCCChHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHhhCCCCCCCCCCCC--CC
Q 006184 166 IKREFLKGALMRFSQFFIS---PLMKVEAMEREVLAVDSEFNQALQ-----NDACRLQQLQCHTSQLGHAFNKFFW--GN 235 (657)
Q Consensus 166 ~~~~~l~~aL~~la~~~~~---P~f~~~~~e~e~~~v~~E~~~~~~-----~~~~~~~~~~~~~~~~~hp~~~~~~--G~ 235 (657)
+.+++++++++.+...+.. -.|+++++++.|..+...+..... +...++.+........ .++..+.. -.
T Consensus 336 ~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ 414 (492)
T 3go9_A 336 TPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSG-VVDIAPEQYQKL 414 (492)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHT-CCCBCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcCCHHHHHHH
Confidence 8888888888777665443 459999999999999888765433 3444555555444332 12111000 00
Q ss_pred -hhhhhhhhhcCccHHHHHHHHHHhhccCCccEEEEEcCCCHHH-HHHHHHHH
Q 006184 236 -KKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDT-LQSWVVEL 286 (657)
Q Consensus 236 -~etL~~~~~~~~~~~~~L~~f~~~~y~~~~m~lvIvG~~~~d~-l~~lv~~~ 286 (657)
.+.|.. +|.++|+++.++++.+++..++|.++-..+. ++++...|
T Consensus 415 ~~~~i~~------vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~ 461 (492)
T 3go9_A 415 RQAFLSG------LTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIY 461 (492)
T ss_dssp HHHHHHH------CCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHH
T ss_pred HHHHHhc------CCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHH
Confidence 122444 8999999999999997655444444444432 44444433
No 37
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.91 E-value=1.1e+02 Score=26.47 Aligned_cols=66 Identities=17% Similarity=0.067 Sum_probs=43.8
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 433 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~ 433 (657)
++...|-++||+........ . . . +.+.+|++|.+-++++...+.+....+ -.++++++++.....+
T Consensus 65 ~~v~~Le~~GlV~R~~~~~D--r--R-----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 65 RTLDQLEEKGLITRHTSAND--R--R-----A--KRIKLTEQSSPIIEQVDGVISSTRKEI-LGGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHHTTSEEEEECSSC--T--T-----C--EEEEECGGGHHHHHHHHHHHHHHHHHH-TTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEeecCCCC--C--c-----c--hhhhcCHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHH
Confidence 35566778999987543211 1 1 2 456789999777777777666666665 4579998887776544
No 38
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=28.12 E-value=1.5e+02 Score=24.45 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=42.7
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+....... + -=...+.+|++|.+-..++...+......+. .++++++++...+.+.
T Consensus 72 ~l~~L~~~glv~r~~~~~-----d------~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~ 137 (140)
T 2nnn_A 72 VVERLDKRGLIQRSADPD-----D------GRRLLVSLSPAGRAELEAGLAAAREINRQAL-APLSLQEQETLRGLLA 137 (140)
T ss_dssp HHHHHHHTTCEEEEEETT-----E------EEEEEEEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCCC-----C------CCeeeeEECHhHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 445666899998643211 1 1234567889887767777776666666654 4788888887766543
No 39
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=27.47 E-value=1.3e+02 Score=26.26 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=42.8
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ . =.+.+.+|++|.+-+.++...+.+.+..+. .++++++++.....+.
T Consensus 88 ~l~~Le~~GlV~r~~~~~D--r---------R~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L~ 153 (166)
T 3deu_A 88 TLDQLEDKGLISRQTCASD--R---------RAKRIKLTEKAEPLIAEMEEVIHKTRGEIL-AGISSEEIELLIKLIA 153 (166)
T ss_dssp HHHHHHHTTSEEEC-------------------CEEEECGGGHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCCCC--C---------CeeEEEECHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 4456678999986532111 1 124567889998777777777777777764 4789888887766544
No 40
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.33 E-value=1.3e+02 Score=19.49 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHH
Q 006184 406 IGFVYQYIKLLRQVSPQKWIFKELQ 430 (657)
Q Consensus 406 ~~~v~~~l~~L~~~~i~e~el~~~k 430 (657)
+.++..++..|+++|++++++....
T Consensus 2 laalkselqalkkegfspeelaale 26 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALE 26 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567788999999999999876553
No 41
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=27.27 E-value=1.7e+02 Score=24.05 Aligned_cols=67 Identities=15% Similarity=-0.003 Sum_probs=43.8
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++|++....... + --...+.+|++|.+-..++...+......+ -.++++++++...+.+..
T Consensus 63 ~l~~L~~~glv~~~~~~~-----d------~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~-~~~l~~~e~~~l~~~l~~ 129 (138)
T 3bpv_A 63 TLRRLEESGFIEREQDPE-----N------RRRYILEVTRRGEEIIPLILKVEERWEDLL-FRDFTEDERKLFRKMCRR 129 (138)
T ss_dssp HHHHHHHTTSEEEEEETT-----E------EEEEEEEECHHHHHTHHHHHHHHHHHHHHH-TTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC-----C------ceeEEeeECHhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Confidence 445666899998743211 1 223456688988777777777776666665 357888888777665443
No 42
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=26.89 E-value=1.6e+02 Score=25.32 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=44.8
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
++...|.++||+........ . . . +.+.+|++|.+-+.++...+.+....+ -.++++++++.....+..
T Consensus 79 ~~l~~Le~~Glv~r~~~~~D--r--R-----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~~e~~~l~~~L~~ 146 (162)
T 3k0l_A 79 KILQDLLANGWIEKAPDPTH--G--R-----R--ILVTVTPSGLDKLNQCNQVVQQLEAQM-LQGVDINLAFLIRNNLEL 146 (162)
T ss_dssp HHHHHHHHTTSEEEEECCSS--S--C-----C--EEEEECHHHHHHHHHHHHHHHHHHHHH-TTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCeEecCCCCc--C--C-----e--eEeEECHhHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Confidence 34556678999987543211 1 1 2 356788989777777777766666666 457899888887765543
No 43
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=26.60 E-value=1.3e+02 Score=24.97 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ . . ...+.+|++|.+-..++...+.+....+. .++++++++.....+.
T Consensus 67 ~l~~Le~~Gli~r~~~~~D--~--R-------~~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~ 132 (139)
T 3eco_A 67 LLRNLERKKLIYRYVDAQD--T--R-------RKNIGLTTSGIKLVEAFTSIFDEMEQTLV-SQLSEEENEQMKANLT 132 (139)
T ss_dssp HHHHHHHTTSEEEEECCC------C-------CEEEEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEeecCCCCC--C--C-------eeeeEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 4456668999987543211 1 1 24567889897777777777776666664 4788888888776554
No 44
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=25.91 E-value=2e+02 Score=23.67 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=43.0
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+........ . . . ..+.+|++|.+-...+...+......+ -.++++++++.....+..
T Consensus 70 ~l~~Le~~Gli~r~~~~~d--~--R-----~--~~i~lT~~G~~~~~~~~~~~~~~~~~~-~~~l~~~e~~~l~~~l~~ 136 (141)
T 3bro_A 70 LLQRMEIKKLLYRKVSGKD--S--R-----Q--KCLKLTKKANKLETIILSYMDSDQSQM-TSGLNKEEVVFLEKILKR 136 (141)
T ss_dssp HHHHHHHTTSEEEEECSSC--T--T-----S--EEEEECHHHHTTHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCCcC--C--C-----e--eeeEECHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Confidence 4456678999987532111 1 1 2 345678989777777777666666665 457888888877665543
No 45
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.76 E-value=84 Score=26.45 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ . =.+.+.+|++|.+-..++.....+....+ ++++++++.....+.
T Consensus 70 ~l~~L~~~Glv~r~~~~~D--~---------R~~~~~LT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~ 133 (140)
T 3hsr_A 70 LLKKLEKKDYVVRTREEKD--E---------RNLQISLTEQGKAIKSPLAEISVKVFNEF---NISEREASDIINNLR 133 (140)
T ss_dssp HHHHHHHTTSEEEEC------------------CEEEECHHHHHTHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEecCCCCC--c---------ceeeeeEChHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 4556778999987533111 1 11355688988777777666665555543 899998888876554
No 46
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.42 E-value=1.7e+02 Score=24.97 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=44.3
Q ss_pred hHHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 356 SLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 356 sL~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
++...|.++||+........ . . .+.+.+|++|.+-..++...+.+....+. .++++++++.....+.
T Consensus 83 ~~l~~Le~~Glv~r~~~~~D--r--R-------~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~ 149 (159)
T 3s2w_A 83 RAIQKLVDEGYVFRQRDEKD--R--R-------SYRVFLTEKGKKLEPDMKKIASEWGEILF-SSFDDRQRREITNSLE 149 (159)
T ss_dssp HHHHHHHHTTSEEEEECC-------C-------CEEEEECHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEecCCCC--C--C-------eeEEEECHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 34556678999987532211 1 1 14567889998777777777777777764 5788888887766544
No 47
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=25.10 E-value=1.5e+02 Score=24.86 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ .+ . +.+.+|++|.+-..++...+......+. .++++++++.....+.
T Consensus 71 ~l~~L~~~Glv~r~~~~~D--~R-------~--~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L~ 136 (143)
T 3oop_A 71 IVDVLLRKELIVREISTED--RR-------I--SLLSLTDKGRKETTELRDIVEASCEKMF-AGVTRTDLEQFTAILK 136 (143)
T ss_dssp HHHHHHHTTSEEEEC------CC-------S--CEEEECHHHHHHHHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeccCCCcc--Cc-------e--eeeeECHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 4456678999986432211 11 1 3456889887777777777777766663 5789988888776554
No 48
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=24.16 E-value=1.5e+02 Score=25.55 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+........ .+ . ..+.+|++|.+-..++...+.+.+..+. .++++++++.....+..
T Consensus 87 ~l~~Le~~Glv~r~~~~~D--rR-------~--~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L~~ 153 (161)
T 3e6m_A 87 TVDQLVDEGLAARSISDAD--QR-------K--RTVVLTRKGKKKLAEISPLINDFHAELV-GNVDPDKLQTCIEVLGE 153 (161)
T ss_dssp HHHHHHHTTSEEECC---C--CC-------S--CEEEECHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCccc--CC-------e--eEeeECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 4456778999986432111 11 1 3567889998777887777777777764 47999888887765543
No 49
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.77 E-value=1.9e+02 Score=23.47 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=38.5
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHH--------HHHH-HhcCCchHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY--------IKLL-RQVSPQKWIFK 427 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~--------l~~L-~~~~i~e~el~ 427 (657)
+...|.++||+..... . --.+++.+|+.|..-...+...+.+. +..+ ...++++++++
T Consensus 48 ~l~~L~~~Glv~r~~~--~-----------rr~~~~~lT~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~~ 114 (123)
T 1okr_A 48 LITRLYKKGFIDRKKD--N-----------KIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIE 114 (123)
T ss_dssp HHHHHHHHTSEEEEEE--T-----------TEEEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHCCCeEEEec--C-----------CeEEEEEecCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHHH
Confidence 4456668999987643 1 12346778887754444444333332 2233 23789999988
Q ss_pred HHHHHHH
Q 006184 428 ELQDIGN 434 (657)
Q Consensus 428 ~~k~~~~ 434 (657)
...+.+.
T Consensus 115 ~l~~~L~ 121 (123)
T 1okr_A 115 ELRNILN 121 (123)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8876653
No 50
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=22.71 E-value=2.4e+02 Score=23.12 Aligned_cols=66 Identities=17% Similarity=-0.005 Sum_probs=42.2
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ . . . ..+.+|+.|.+-..++...+...+..+. .++++++++...+.+.
T Consensus 67 ~l~~L~~~gli~r~~~~~d--~--r-----~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~ 132 (139)
T 3bja_A 67 MIQRMKRDGYVMTEKNPND--Q--R-----E--TLVYLTKKGEETKKQVDVQYSDFLKENC-GCFTKEEEGILEDLLL 132 (139)
T ss_dssp HHHHHHHTTSEEEEECSSC--T--T-----C--EEEEECHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeeccCCCC--C--c-----e--eEEEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 4456668999986532111 1 1 2 3456788887767777666666666664 5788888887766544
No 51
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.53 E-value=2e+02 Score=24.88 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+.+.|.++||+........ . . . +.+.+|++|.+-+.++...+.+.+..+.. ++++++++...+.+..
T Consensus 79 ~l~~Le~~GlV~r~~~~~D--r--R-----~--~~~~LT~~G~~~~~~~~~~~~~~~~~~~~-~l~~ee~~~l~~~L~~ 145 (168)
T 2nyx_A 79 MVDRLVGAELIDRLPHPTS--R--R-----E--LLAALTKRGRDVVRQVTEHRRTEIARIVE-QMAPAERHGLVRALTA 145 (168)
T ss_dssp HHHHHHHTTSEEEEECSSC--S--S-----C--EEEEECHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeccCCCC--C--C-----e--eEEEECHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 4556778999986432111 1 1 2 34678898877777777777777776644 7888888887766544
No 52
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.46 E-value=1.3e+02 Score=25.21 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=41.8
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+........ . . . ..+.+|++|.+-+.++...+...+..+...++++++++...+.+.
T Consensus 70 ~l~~Le~~glv~r~~~~~d--~--R-----~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 136 (147)
T 2hr3_A 70 LLRELERGGLIVRHADPQD--G--R-----R--TRVSLSSEGRRNLYGNRAKREEWLVRAMHACLDESERALLAAAGP 136 (147)
T ss_dssp HHHHHHHTTSEEEEC---------------C--CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEeeCCCCCC--C--C-----c--eeeEECHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4456668999976432111 1 1 1 245688988777777777777777666543788888887776443
No 53
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.68 E-value=1.2e+02 Score=25.66 Aligned_cols=67 Identities=15% Similarity=-0.046 Sum_probs=42.1
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|-++||+........ -=.+.+.+|++|.+-..++...+......+. .++++++++.....+..
T Consensus 74 ~l~~Le~~Glv~r~~~~~D-----------~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L~~ 140 (150)
T 3fm5_A 74 LVDELEERGLVVRTLDPSD-----------RRNKLIAATEEGRRLRDDAKARVDAAHGRYF-EGIPDTVVNQMRDTLQS 140 (150)
T ss_dssp HHHHHHTTTSEEC----------------------CEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCccc-----------cchheeeECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 4456668999976432111 1124567889998777777777777777664 57999988888776554
No 54
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=21.34 E-value=2.2e+02 Score=25.30 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+........ . . . +.+.+|++|.+-+.++.......+..+ -.++++++++.....+..
T Consensus 77 ~l~~Le~~GlV~r~~~~~D--r--R-----~--~~l~LT~~G~~~~~~~~~~~~~~~~~~-~~~l~~ee~~~l~~~L~~ 143 (189)
T 3nqo_A 77 LVANLEKNGYVDVIPSPHD--K--R-----A--INVKVTDLGKKVMVTCSRTGINFMADV-FHEFTKDELETLWSLLKK 143 (189)
T ss_dssp HHHHHHHTTSEEEEECSSC--S--S-----C--EEEEECHHHHHHHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeccCCCC--C--C-----e--eEEEECHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHH
Confidence 4456668999987543211 1 1 2 456788989777777777777766666 467888888887765544
No 55
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=21.20 E-value=2.5e+02 Score=23.19 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=42.1
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+........ . . . ..+.+|++|.+-...+...+......+ -.++++++++.....+..
T Consensus 63 ~l~~Le~~gli~r~~~~~d--~--R-----~--~~~~lT~~G~~~~~~~~~~~~~~~~~~-~~~l~~~e~~~l~~~l~~ 129 (144)
T 1lj9_A 63 AIKRLEEQGFIYRQEDASN--K--K-----I--KRIYATEKGKNVYPIIVRENQHSNQVA-LQGLSEVEISQLADYLVR 129 (144)
T ss_dssp HHHHHHHTTSEEEEECSSC--T--T-----C--EEEEECHHHHHHHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCCC--C--c-----e--eeeEEChhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Confidence 4456668999987532211 1 1 2 345678888766666666666666555 457888888877665543
No 56
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.15 E-value=2.4e+02 Score=23.79 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+....... .. . . ..+.+|++|.+-+.++...+.+.+..+. .++++++++.....+..
T Consensus 78 ~l~~Le~~Gli~r~~~~~--d~--R-----~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~ee~~~l~~~L~~ 144 (154)
T 2eth_A 78 VVDSLEKRGLVVREMDPV--DR--R-----T--YRVVLTEKGKEIFGEILSNFESLLKSVL-EKFSEEDFKVVSEGFNR 144 (154)
T ss_dssp HHHHHHHTTSEEEEECTT--TS--S-----C--EEEEECHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeeCCCC--Cc--c-----e--eEEEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Confidence 445667899998753211 11 1 1 3456788887777777777777776664 47888888877665543
No 57
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.01 E-value=1.5e+02 Score=24.60 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=41.5
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGN 434 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~ 434 (657)
+...|.++||+....... + --...+.+|++|.+-..++...+......+. .++++++++.....+.
T Consensus 70 ~l~~Le~~glv~r~~~~~-----d------~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~ 135 (142)
T 2fbi_A 70 VLARLERDGIVRRWKAPK-----D------QRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQ-ERFGEEKLAQLLELLN 135 (142)
T ss_dssp HHHHHHHTTSEEEEEETT-----E------EEEEEEEECHHHHHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEeecCCC-----C------CCeeEEEECHHHHHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHH
Confidence 445666899998653211 1 2234567889887767776666666666654 3577777777766544
No 58
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.68 E-value=1.9e+02 Score=24.28 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHHHhCCCcceeeeeeCCCCCCccccccEEEEEEEeCccccccHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 006184 357 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNM 435 (657)
Q Consensus 357 L~~~LR~~Gl~ysv~a~~~~~~~~~~~~~g~f~i~~~l~~~G~~~~~~v~~~v~~~l~~L~~~~i~e~el~~~k~~~~~ 435 (657)
+...|.++||+........ . . . ..+.+|++|.+-+.++...+.+....+. .++++++++...+.+..
T Consensus 76 ~l~~Le~~Glv~r~~~~~d--~--R-----~--~~~~lT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l~~ 142 (150)
T 2rdp_A 76 LVDRMERNGLVARVRDEHD--R--R-----V--VRIRLLEKGERIIEEVIEKRQRDLANVL-ESFSDEEIVVFERCLRK 142 (150)
T ss_dssp HHHHHHHTTSEEEEECCC------------C--EEEEECHHHHHHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeecCCCCC--c--c-----e--eEeEECHhHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 4456668999986432111 1 1 2 3456889887777777777666666653 56888888777665443
Done!