BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006185
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 11 PSINTFEDLTGISLMFNDIHEVP-DGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
PS+NT E L N + VP E KL+ L+L+ N + IP F + L+ L
Sbjct: 83 PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 69 DLGGIRMVXXXXXXX--XXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-P 125
DLG ++ + NLR L L CN L D+ + L LE L+LS + ++ I P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
SF L+ LR L L + I L+ LEEL +SH+
Sbjct: 196 GSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 11 PSINTFEDLTGISLMFNDIHEVP-DGLE-CPKLQALFLQKNHLLVIPDPFFQGMKDLKVL 68
PS+NT E L N + VP E KL+ L+L+ N + IP F + L+ L
Sbjct: 83 PSLNTLE------LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 69 DLGGIRMVXXXXXXXXX--XNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-P 125
DLG ++ + NLR L L CN L D+ + L LE L+LS + ++ I P
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 126 VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
SF L+ LR L L + I L+ LEEL +SH+
Sbjct: 196 GSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 12 SINTFEDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
+ N +L + L N + +P+G + KL+ L+L+ N + IP F + L+ LD
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 70 LGGIRMVXXXXXXX--XXXNLRTLRLDYCN--HLPDLSLIGELSGLEILDLSKSDVNEI- 124
LG ++ + NLR L L CN +P+L+ L L+ LDLS + ++ I
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIR 223
Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
P SF L HL+ L + +++I L+ L E+ ++H+
Sbjct: 224 PGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN 265
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHLP 100
L+ L L +NH+ I F G+ +L L+L R+ +P
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT---------------------IP 128
Query: 101 DLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159
+ + + LS L+ L L + + IP +F R+ LR LDL + L I G L L
Sbjct: 129 NGAFV-YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 160 EELYMSHSFCH 170
Y++ + C+
Sbjct: 188 R--YLNLAMCN 196
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 12 SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLD 69
+ N L + L N + +P G KL+ L+L+ N + IP F + L LD
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177
Query: 70 LGGIRMVXXXX--XXXXXXNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-PV 126
LG ++ + NL+ L L CN + D+ + L GLE L++S + EI P
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPG 236
Query: 127 SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167
SF LS L+ L + + + LI L L EL ++H+
Sbjct: 237 SFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN 276
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHLP 100
L+ L+L N L +P F + L VLDLG ++ LP
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV---------------------LP 104
Query: 101 DLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE 160
++ L L+ L + + + E+P RL+HL L L D L+ IP G RL L
Sbjct: 105 S-AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL-DQNQLKSIPHGAFDRLSSLT 162
Query: 161 ELYM 164
Y+
Sbjct: 163 HAYL 166
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 87 NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL 145
N+R L L N L D+S + EL+ L L L+ + + +P F +L++L+ L L + L
Sbjct: 64 NVRYLALG-GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QL 121
Query: 146 ELIPPGVLSRLRKLEELYMSHS 167
+ +P GV +L L LY+ H+
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHN 143
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 29 IHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNL 88
+ VP G+ Q +FL N + +P FQ ++L +L L +
Sbjct: 22 LQAVPTGIPASS-QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGI---------- 70
Query: 89 RTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI--PVSFGRLSHLRLLDLTDCYNLE 146
D + L+ LE LDLS + + P +F L HL L L C L+
Sbjct: 71 ------------DAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC-GLQ 117
Query: 147 LIPPGVLSRLRKLEELYM 164
+ PG+ L L+ LY+
Sbjct: 118 ELGPGLFRGLAALQYLYL 135
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 24/127 (18%)
Query: 40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHL 99
LQ L+LQ N+L +PD F+ + +L L L G R+ +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS---------------------V 167
Query: 100 PDLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158
P+ + G L L+ L L ++ V + P +F L L L L NL ++P VL LR
Sbjct: 168 PEHAFRG-LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF-ANNLSMLPAEVLVPLRS 225
Query: 159 LEELYMS 165
L+ L ++
Sbjct: 226 LQYLRLN 232
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 26/155 (16%)
Query: 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHL- 99
L +L L NHL I F + +L+ LDL + + L Y NH+
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 100 -PDLSLIGELSGLEILDLSKSDVNEIPVSF----GRLSHLRLLDLTDCYNLELIPPGVLS 154
D + +++ L+ L LS++ ++ PV +L L LLDL+ L+ +P L+
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLP---LT 181
Query: 155 RLRKLEE-----LYMSHS-----------FCHWQF 173
L+KL LY+ ++ F HWQ+
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQY 216
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 87 NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL 145
N+R L L N L D+S + EL+ L L L+ + + +P F +L++L+ L L + L
Sbjct: 64 NVRYLALG-GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QL 121
Query: 146 ELIPPGVLSRLRKLEELYMSHS 167
+ +P GV +L L L ++H+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHN 143
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 25 MFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXX 84
+F D+ V LE K++ + ++ + + ++P F Q +K L+ LDL MV
Sbjct: 324 LFYDLSTVYSLLE--KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 381
Query: 85 XX----NLRTLRLDYCNHLPDLSLIGE----LSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
+L+TL L NHL + GE L L LD+S++ + +P S +R
Sbjct: 382 CKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 440
Query: 137 LDLT 140
L+L+
Sbjct: 441 LNLS 444
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 19 LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
LT + L ND+ +P G+ PKL L + N+L I D FQ L+ L L R+
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 25 MFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXX 84
+F D+ V LE K++ + ++ + + ++P F Q +K L+ LDL MV
Sbjct: 298 LFYDLSTVYSLLE--KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Query: 85 XX----NLRTLRLDYCNHLPDLSLIGE----LSGLEILDLSKSDVNEIPVSFGRLSHLRL 136
+L+TL L NHL + GE L L LD+S++ + +P S +R
Sbjct: 356 CKGAWPSLQTLVLSQ-NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414
Query: 137 LDLT 140
L+L+
Sbjct: 415 LNLS 418
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 MRAGVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPF 58
+RA +E + E+L I N + ++P G+ + PKL+ L L N L +PD
Sbjct: 154 LRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Query: 59 FQGMKDLK 66
F + L+
Sbjct: 214 FDRLTSLQ 221
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N + E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N + E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 58 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N++ E+P GL L L LQ+N L IP FF
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N + E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N + E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N++ E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-------------VSFGRLSHL 134
L L LD C L L + G L L LDLS + + +P VSF RL+ L
Sbjct: 57 LTQLNLDRC-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 135 RLL------DLTDCY----NLELIPPGVLSRLRKLEELYMSHS 167
L +L + Y L+ +PPG+L+ KLE+L ++++
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL ND+ E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 26/82 (31%)
Query: 15 TFEDLTGISLMFNDIHEVPD----GLE----------------------CPKLQALFLQK 48
T +DL ++L +N I+++ D GL+ PK+ + LQK
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 49 NHLLVIPDPFFQGMKDLKVLDL 70
NH+ +I D F+ ++ L+ LDL
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDL 369
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLG--GIRMVXXXXXXXXXXNLRTLRLDYCNH 98
L L L KNH+ I + F + L++LDLG I N+ + L Y +
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 99 L----PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLS 154
L +L+ L L + ++ +V+ P F L +L +LDL++ N+ I +L
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN-NIANINEDLLE 501
Query: 155 RLRKLEELYMSHS 167
L LE L H+
Sbjct: 502 GLENLEILDFQHN 514
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 16 FEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDL 70
+ +LT + L +N++H+V +G P L+ L L+ N++ + F G+ +L+ L L
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 19 LTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV 76
LT + L ND+ +P G+ PKL L + N+L I D FQ L+ L L R+
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 88 LRTLRLDYCNHLPDLSLIGE-LSGLEILDLSKSDVNEIPVS----FGRLSHLRLLDLTDC 142
L TL L + N L L L+G+ L L +LD+S + + +P+ G L L L
Sbjct: 79 LGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KG 133
Query: 143 YNLELIPPGVLSRLRKLEELYMSHS 167
L+ +PPG+L+ KLE+L ++++
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N++ E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN-LE 146
L L LD L L + G L L LDLS + + +P+ L L +LD++ +N L
Sbjct: 57 LTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLT 113
Query: 147 LIPPGVLSRLRKLEELYM 164
+P G L L +L+ELY+
Sbjct: 114 SLPLGALRGLGELQELYL 131
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 88 LRTLRLDYCNHLPDLSLIGE-LSGLEILDLSKSDVNEIPVS----FGRLSHLRLLDLTDC 142
L TL L + N L L L+G+ L L +LD+S + + +P+ G L L L
Sbjct: 79 LGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KG 133
Query: 143 YNLELIPPGVLSRLRKLEELYMSHS 167
L+ +PPG+L+ KLE+L ++++
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N++ E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN-LE 146
L L LD L L + G L L LDLS + + +P+ L L +LD++ +N L
Sbjct: 57 LTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLT 113
Query: 147 LIPPGVLSRLRKLEELYM 164
+P G L L +L+ELY+
Sbjct: 114 SLPLGALRGLGELQELYL 131
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 6 ELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQG 61
+LK P ++ LT +SL +N++ +P G+ + L+ L L N L +P+ F
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 62 MKDLKVLDL 70
+ +LK L L
Sbjct: 180 LTELKTLKL 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 88 LRTLRLDYCNHLPDLSLIGE-LSGLEILDLSKSDVNEIPVS----FGRLSHLRLLDLTDC 142
L TL L + N L L L+G+ L L +LD+S + + +P+ G L L L
Sbjct: 79 LGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KG 133
Query: 143 YNLELIPPGVLSRLRKLEELYMSHS 167
L+ +PPG+L+ KLE+L ++++
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANN 158
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 4 GVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFF 59
G ELK P + L +SL N++ E+P GL L L LQ+N L IP FF
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 88 LRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYN-LE 146
L L LD L L + G L L LDLS + + +P+ L L +LD++ +N L
Sbjct: 57 LTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS--FNRLT 113
Query: 147 LIPPGVLSRLRKLEELYM 164
+P G L L +L+ELY+
Sbjct: 114 SLPLGALRGLGELQELYL 131
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156
N + D++ + L LE L L + + +I V RL+ L L L D ++P L+RL
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRIVP---LARL 175
Query: 157 RKLEELYMSHS 167
KL+ LY+S +
Sbjct: 176 TKLQNLYLSKN 186
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156
N + DL+ + L+ + L+LS + + + G L ++ LDLT ++ P L+ L
Sbjct: 79 NQITDLTPLKNLTKITELELSGNPLKNVSAIAG-LQSIKTLDLTSTQITDVTP---LAGL 134
Query: 157 RKLEELYMS----------HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI 206
L+ LY+ + Q+ S + + N L LS+LT+L D K
Sbjct: 135 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVN-DLTPLANLSKLTTLRADDNKISD 193
Query: 207 MPSDMSLPNL 216
+ SLPNL
Sbjct: 194 ISPLASLPNL 203
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 99 LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149
LPD + +GLE L L+++ + +P S L+ LR L + C L +P
Sbjct: 119 LPDTX--QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 24/127 (18%)
Query: 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHLP 100
L+ L L+ N L +IP F G+ +L LD+ ++V + LDY
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--------------ILLDY----- 122
Query: 101 DLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159
+ +L L+ L++ +D+ I +F L+ L L L C NL IP LS L L
Sbjct: 123 ---MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGL 178
Query: 160 EELYMSH 166
L + H
Sbjct: 179 IVLRLRH 185
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 15/130 (11%)
Query: 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156
N + DL+ + L+ + L+LS + + + G L ++ LDLT ++ P L+ L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAG-LQSIKTLDLTSTQITDVTP---LAGL 128
Query: 157 RKLEELYMS----------HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI 206
L+ LY+ + Q+ S + + + L LS+LT+L D K
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISD 187
Query: 207 MPSDMSLPNL 216
+ SLPNL
Sbjct: 188 ISPLASLPNL 197
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV 339
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKV 338
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 16 FEDLTGISLMFNDIHEVPDG---LECPKLQALFLQK-NHLLVIPDPFFQGMKDLKVLDLG 71
F DL I + ND+ EV + PKL + ++K N+LL I FQ + +L+ L +
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 72 --GIRMVXXXXXXXXXXNLRTLRLDYCNHL-----PDLSLIGELSGLEILDLSKSDVNEI 124
GI+ + +L+ + LD +++ S +G IL L+K+ + EI
Sbjct: 113 NTGIKHLPDVHKIH---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169
Query: 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVL 153
S + L L+L+D NLE +P V
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVF 198
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 33/162 (20%)
Query: 37 ECPKLQALFLQKNHLLV-IPDPFFQ------------------------GMKDLKVLDLG 71
ECP+L+ L + HL V P FQ G++DL+ L+L
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQ 456
Query: 72 GIRM----VXXXXXXXXXXNLRTLRLDYCNHLP-DLSLIGELSGLEILDLSKSDVNEIPV 126
G + +L L L CN L D L + LDLS + +
Sbjct: 457 GNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL--TGD 514
Query: 127 SFGRLSHLRLLDLT-DCYNLELIPPGVLSRLRKLEELYMSHS 167
S LSHL+ L L N+ +IPP +L L + + +SH+
Sbjct: 515 SMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 297 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKV 342
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 339
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 294 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 339
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 338
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 24/127 (18%)
Query: 40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVXXXXXXXXXXNLRTLRLDYCNHL 99
LQ L+LQ N L +PD F+ + +L L L G R+ + +
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI---------------------SSV 167
Query: 100 PDLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158
P+ + G L L+ L L ++ V + P +F L L L L NL +P L+ LR
Sbjct: 168 PERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-ANNLSALPTEALAPLRA 225
Query: 159 LEELYMS 165
L+ L ++
Sbjct: 226 LQYLRLN 232
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHL 51
+L+D I+ ++LT ++L FN+I ++ KLQ LF N +
Sbjct: 298 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,676,512
Number of Sequences: 62578
Number of extensions: 687514
Number of successful extensions: 1542
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 148
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)