Query 006185
Match_columns 657
No_of_seqs 400 out of 3454
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 19:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.4E-37 1.4E-41 355.2 26.8 513 16-603 68-591 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.4E-36 1.2E-40 347.5 25.6 508 12-596 88-607 (968)
3 PLN03210 Resistant to P. syrin 99.9 7.6E-25 1.6E-29 254.1 24.1 347 12-425 553-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 2.3E-24 4.9E-29 250.2 26.1 348 53-534 548-909 (1153)
5 KOG0472 Leucine-rich repeat pr 99.9 8E-29 1.7E-33 233.6 -11.9 463 17-529 45-539 (565)
6 KOG4194 Membrane glycoprotein 99.9 3.8E-25 8.2E-30 218.3 7.8 384 19-470 54-448 (873)
7 KOG0444 Cytoskeletal regulator 99.9 1.1E-26 2.4E-31 230.6 -3.8 361 10-444 24-394 (1255)
8 KOG4194 Membrane glycoprotein 99.9 3.9E-25 8.5E-30 218.2 4.1 339 17-385 78-425 (873)
9 KOG0618 Serine/threonine phosp 99.9 6.6E-25 1.4E-29 228.1 -2.3 481 21-622 2-490 (1081)
10 KOG0444 Cytoskeletal regulator 99.9 5.8E-25 1.3E-29 218.4 -5.7 365 13-451 3-377 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 4.6E-25 1E-29 208.3 -9.5 387 13-447 87-539 (565)
12 KOG0618 Serine/threonine phosp 99.9 1.1E-24 2.5E-29 226.3 -7.6 464 6-530 9-488 (1081)
13 KOG4658 Apoptotic ATPase [Sign 99.8 1.2E-18 2.6E-23 192.0 10.1 139 3-141 509-651 (889)
14 KOG0617 Ras suppressor protein 99.7 1.3E-19 2.7E-24 151.8 -4.4 166 30-210 24-191 (264)
15 KOG0617 Ras suppressor protein 99.7 2.2E-19 4.8E-24 150.4 -3.7 162 6-170 22-186 (264)
16 KOG4341 F-box protein containi 99.6 1.7E-18 3.7E-23 165.5 -8.1 319 268-657 138-461 (483)
17 PRK15387 E3 ubiquitin-protein 99.6 9.8E-15 2.1E-19 157.8 14.7 257 17-365 201-459 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 3.6E-15 7.9E-20 162.2 11.3 179 17-224 178-356 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.3E-19 156.3 15.3 254 40-386 202-455 (788)
20 PRK15370 E3 ubiquitin-protein 99.6 2.1E-14 4.6E-19 156.3 12.3 191 4-224 187-377 (754)
21 KOG4237 Extracellular matrix p 99.5 3.3E-16 7.2E-21 148.7 -5.6 121 4-125 55-180 (498)
22 KOG4237 Extracellular matrix p 99.4 1.2E-14 2.6E-19 138.3 -2.3 261 11-305 38-357 (498)
23 KOG4341 F-box protein containi 99.4 2.7E-15 5.9E-20 143.8 -7.4 276 295-626 139-419 (483)
24 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.6E-17 143.8 6.9 134 7-141 535-677 (889)
25 PF14580 LRR_9: Leucine-rich r 99.2 4.3E-12 9.4E-17 112.4 4.3 115 6-122 8-126 (175)
26 cd00116 LRR_RI Leucine-rich re 99.2 4.1E-12 8.9E-17 128.6 3.7 204 13-224 19-260 (319)
27 cd00116 LRR_RI Leucine-rich re 99.2 3.3E-12 7.2E-17 129.3 2.8 175 21-204 2-205 (319)
28 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.5E-17 130.7 -3.3 190 4-210 59-252 (722)
29 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 102.1 4.9 116 24-142 4-123 (175)
30 KOG0532 Leucine-rich repeat (L 99.0 2.1E-11 4.5E-16 121.8 -3.6 161 5-170 85-247 (722)
31 COG4886 Leucine-rich repeat (L 98.9 1E-09 2.3E-14 114.3 6.9 189 21-224 97-287 (394)
32 COG4886 Leucine-rich repeat (L 98.9 6.5E-10 1.4E-14 115.8 5.3 181 12-208 111-293 (394)
33 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5.1E-15 105.4 0.5 138 84-237 282-422 (490)
34 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 106.5 -1.6 124 15-141 282-408 (490)
35 KOG3207 Beta-tubulin folding c 98.6 2.9E-09 6.3E-14 103.6 -1.6 205 14-224 118-336 (505)
36 PF13855 LRR_8: Leucine rich r 98.6 4.9E-08 1.1E-12 71.0 4.0 59 39-97 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.6 4.1E-08 9E-13 71.3 3.2 59 17-75 1-61 (61)
38 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.2E-13 98.8 0.8 180 13-204 142-338 (505)
39 PRK15386 type III secretion pr 98.5 3.3E-07 7.3E-12 91.4 9.5 15 517-531 155-169 (426)
40 KOG1909 Ran GTPase-activating 98.5 1.2E-08 2.5E-13 96.7 -0.7 206 13-225 54-309 (382)
41 PRK15386 type III secretion pr 98.5 4.8E-07 1E-11 90.3 8.6 165 373-622 49-214 (426)
42 KOG0531 Protein phosphatase 1, 98.4 2E-08 4.3E-13 104.8 -1.9 188 16-222 71-263 (414)
43 KOG2120 SCF ubiquitin ligase, 98.4 5.5E-09 1.2E-13 96.5 -5.4 172 40-224 186-373 (419)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.6E-08 3.4E-13 93.5 -4.1 56 111-167 187-244 (419)
45 PLN03150 hypothetical protein; 98.4 1.2E-06 2.6E-11 95.8 9.2 104 64-168 419-526 (623)
46 PLN03150 hypothetical protein; 98.4 1.1E-06 2.4E-11 96.0 8.8 106 87-204 419-527 (623)
47 KOG0531 Protein phosphatase 1, 98.3 4.4E-08 9.4E-13 102.2 -2.2 177 12-208 90-271 (414)
48 KOG1859 Leucine-rich repeat pr 98.3 5E-09 1.1E-13 108.0 -9.0 176 12-204 104-291 (1096)
49 KOG1909 Ran GTPase-activating 98.3 1.5E-07 3.2E-12 89.4 1.4 19 185-203 206-224 (382)
50 KOG1947 Leucine rich repeat pr 98.2 1E-07 2.2E-12 102.6 -2.6 40 557-598 403-442 (482)
51 KOG3665 ZYG-1-like serine/thre 98.2 5.3E-07 1.1E-11 98.1 1.3 132 37-170 120-263 (699)
52 KOG3665 ZYG-1-like serine/thre 98.2 8.9E-07 1.9E-11 96.3 2.8 137 62-204 121-262 (699)
53 KOG1947 Leucine rich repeat pr 98.1 1.7E-07 3.6E-12 100.9 -3.9 246 322-623 187-442 (482)
54 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 54.4 3.5 34 64-97 2-35 (44)
55 KOG4579 Leucine-rich repeat (L 97.9 4.2E-07 9E-12 74.4 -3.7 88 38-125 52-139 (177)
56 PF12799 LRR_4: Leucine Rich r 97.9 2.4E-05 5.2E-10 51.8 4.3 39 110-149 2-40 (44)
57 KOG1644 U2-associated snRNP A' 97.8 3E-05 6.4E-10 68.4 5.7 123 18-142 20-150 (233)
58 KOG1644 U2-associated snRNP A' 97.8 3.2E-05 6.9E-10 68.2 5.7 102 18-119 43-150 (233)
59 KOG1859 Leucine-rich repeat pr 97.8 2.1E-07 4.6E-12 96.3 -9.0 123 16-142 163-289 (1096)
60 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.7E-10 73.8 3.0 81 61-141 28-129 (388)
61 KOG4579 Leucine-rich repeat (L 97.6 6.8E-06 1.5E-10 67.5 -2.0 89 13-102 49-139 (177)
62 KOG2982 Uncharacterized conser 97.5 4.4E-05 9.5E-10 71.3 2.2 68 263-335 194-261 (418)
63 KOG2982 Uncharacterized conser 97.3 0.00013 2.8E-09 68.2 2.7 181 14-204 68-261 (418)
64 PF13306 LRR_5: Leucine rich r 97.2 0.0015 3.1E-08 55.9 7.6 117 37-159 10-128 (129)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00048 1E-08 63.7 1.4 83 37-122 41-129 (260)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0055 1.2E-07 52.3 7.1 118 12-134 7-128 (129)
67 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 61.6 2.4 105 14-119 40-153 (260)
68 KOG2123 Uncharacterized conser 96.6 6.8E-05 1.5E-09 69.4 -5.6 80 16-97 18-99 (388)
69 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 66.4 -4.2 81 85-168 18-99 (388)
70 COG5238 RNA1 Ran GTPase-activa 96.3 0.003 6.5E-08 58.6 3.3 185 13-204 54-284 (388)
71 KOG3864 Uncharacterized conser 96.2 0.00025 5.5E-09 62.7 -4.1 71 488-570 121-191 (221)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.003 6.5E-08 34.6 0.7 21 110-130 1-21 (22)
73 KOG3864 Uncharacterized conser 95.9 0.0018 4E-08 57.4 -0.4 68 320-389 122-189 (221)
74 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.2E-08 34.4 0.7 21 64-84 1-21 (22)
75 PF13504 LRR_7: Leucine rich r 94.3 0.03 6.6E-07 28.3 1.5 16 110-125 2-17 (17)
76 PF13504 LRR_7: Leucine rich r 94.1 0.032 7E-07 28.2 1.3 15 64-78 2-16 (17)
77 KOG0473 Leucine-rich repeat pr 93.2 0.0029 6.2E-08 57.3 -5.8 85 37-122 40-124 (326)
78 KOG0473 Leucine-rich repeat pr 92.9 0.0023 4.9E-08 58.0 -7.0 82 60-141 39-120 (326)
79 smart00369 LRR_TYP Leucine-ric 90.7 0.23 4.9E-06 28.4 2.1 21 39-59 2-22 (26)
80 smart00370 LRR Leucine-rich re 90.7 0.23 4.9E-06 28.4 2.1 21 39-59 2-22 (26)
81 smart00367 LRR_CC Leucine-rich 89.1 0.21 4.4E-06 28.6 1.1 16 583-598 2-17 (26)
82 smart00369 LRR_TYP Leucine-ric 88.7 0.35 7.7E-06 27.5 1.9 20 108-127 1-20 (26)
83 smart00370 LRR Leucine-rich re 88.7 0.35 7.7E-06 27.5 1.9 20 108-127 1-20 (26)
84 smart00367 LRR_CC Leucine-rich 87.4 0.32 6.9E-06 27.8 1.1 18 435-452 1-18 (26)
85 KOG4308 LRR-containing protein 82.3 0.012 2.7E-07 61.6 -11.2 13 192-204 262-274 (478)
86 KOG4308 LRR-containing protein 72.4 0.061 1.3E-06 56.6 -9.5 179 18-205 88-303 (478)
87 smart00364 LRR_BAC Leucine-ric 72.0 2.5 5.5E-05 24.0 1.2 17 110-126 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 57.7 9.5 0.00021 21.8 1.8 17 17-33 2-18 (26)
89 PF13516 LRR_6: Leucine Rich r 55.0 7.2 0.00016 21.5 1.1 13 39-51 2-14 (24)
90 smart00368 LRR_RI Leucine rich 47.6 15 0.00032 21.3 1.6 13 63-75 2-14 (28)
91 KOG3763 mRNA export factor TAP 20.7 59 0.0013 34.5 1.7 63 37-100 216-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.4e-37 Score=355.19 Aligned_cols=513 Identities=19% Similarity=0.209 Sum_probs=369.8
Q ss_pred CCCccEEEccCCCccc-cCCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEE
Q 006185 16 FEDLTGISLMFNDIHE-VPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTL 91 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L 91 (657)
..+++.|++++|.++. ++..+ .+++|++|++++|.+. .+|..+|..+++||+|++++|++. .+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 3578899999998874 44444 8899999999999987 789888889999999999999885 4554 568899999
Q ss_pred EccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 92 RLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 92 ~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
++++|... ..|..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 99999844 45788999999999999999876 78888999999999999997776777876 89999999999998865
Q ss_pred ccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc-ccCcc
Q 006185 170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN-KRCSR 246 (657)
Q Consensus 170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~ 246 (657)
.. ..+..++++++|++|++++|... .+|.. ..+++|+.|++.++.. .+.++..+. ...++
T Consensus 225 ~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l------~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 225 SG-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL------SGPIPPSIFSLQKLI 287 (968)
T ss_pred CC-----------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee------eccCchhHhhccCcC
Confidence 42 56777889999999999998864 45544 6788999999886632 222233332 36788
Q ss_pred eEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccccccc
Q 006185 247 AMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLE 326 (657)
Q Consensus 247 ~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 326 (657)
.+++++|.-...+|.++... ++|+.|++.++.-....+..+ ..+++|+.|++++|.-...++.. ...+++|+
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~-----l~~~~~L~ 359 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKN-----LGKHNNLT 359 (968)
T ss_pred EEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChH-----HhCCCCCc
Confidence 88888875555677776665 889999998774322222222 34788999999888433333332 23478899
Q ss_pred EEeccccccccccccccCCCC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccc
Q 006185 327 WLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEE 404 (657)
Q Consensus 327 ~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 404 (657)
.|+++++. ..+..|.. .+++|+.|+++++. +....|..+ ..+++|+.|++++|.--..+ |..
T Consensus 360 ~L~Ls~n~-----l~~~~p~~~~~~~~L~~L~l~~n~-l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~---------p~~ 423 (968)
T PLN00113 360 VLDLSTNN-----LTGEIPEGLCSSGNLFKLILFSNS-LEGEIPKSL-GACRSLRRVRLQDNSFSGEL---------PSE 423 (968)
T ss_pred EEECCCCe-----eEeeCChhHhCcCCCCEEECcCCE-ecccCCHHH-hCCCCCCEEECcCCEeeeEC---------Chh
Confidence 99998875 22233332 56788999998854 444455544 67889999999886533222 555
Q ss_pred cccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccC
Q 006185 405 TELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTST 484 (657)
Q Consensus 405 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~ 484 (657)
+..+++|+.|+++++. ++... +.....+++|++|++++|.-...+ |..+ ..++|+.|+++++ .+....
T Consensus 424 ~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~-p~~~-~~~~L~~L~ls~n-------~l~~~~ 491 (968)
T PLN00113 424 FTKLPLVYFLDISNNN-LQGRI--NSRKWDMPSLQMLSLARNKFFGGL-PDSF-GSKRLENLDLSRN-------QFSGAV 491 (968)
T ss_pred HhcCCCCCEEECcCCc-ccCcc--ChhhccCCCCcEEECcCceeeeec-Cccc-ccccceEEECcCC-------ccCCcc
Confidence 6778889999998865 33221 122234788999999998654433 4433 3477888888764 233344
Q ss_pred CCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCc
Q 006185 485 SSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCD 564 (657)
Q Consensus 485 ~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 564 (657)
|..+..+++|+.|++++|.-...+ |.. ...+++|++|++++|.--..++ .....+++|+.|++++
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p-------------~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEI-PDE-LSSCKKLVSLDLSHNQLSGQIP-------------ASFSEMPVLSQLDLSQ 556 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeC-ChH-HcCccCCCEEECCCCcccccCC-------------hhHhCcccCCEEECCC
Confidence 566778888999999887543333 333 4678899999998886433332 2223578899999999
Q ss_pred CCCccccccCCCcceeeccccceeeeccCCCcceecCCC
Q 006185 565 LGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGN 603 (657)
Q Consensus 565 c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~ 603 (657)
+.-...+| .... .+++|+.|++++|+-...+|...
T Consensus 557 N~l~~~~p-~~l~---~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 557 NQLSGEIP-KNLG---NVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred CcccccCC-hhHh---cCcccCEEeccCCcceeeCCCcc
Confidence 87666777 6666 57899999999998777777543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-36 Score=347.45 Aligned_cols=508 Identities=20% Similarity=0.213 Sum_probs=387.2
Q ss_pred CCCCCCCccEEEccCCCcc-ccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCC
Q 006185 12 SINTFEDLTGISLMFNDIH-EVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLS 86 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~ 86 (657)
.+..+++|++|++++|.++ .+|... .+++||+|++++|.+. .+|. +.+++|++|++++|.+. .+|..+++++
T Consensus 88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCC
Confidence 4778999999999999987 788765 8999999999999987 5554 56899999999999986 6899999999
Q ss_pred CCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 87 NLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 87 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
+|++|++++|... ..|..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 9999999999844 46789999999999999999887 78999999999999999997766678877 899999999999
Q ss_pred ccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcc-c
Q 006185 165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENF-N 241 (657)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~ 241 (657)
++|.+.. ..+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++++. +.+.+++.+ .
T Consensus 244 ~~n~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~------l~~~~p~~~~~ 306 (968)
T PLN00113 244 VYNNLTG-----------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS------LSGEIPELVIQ 306 (968)
T ss_pred cCceecc-----------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe------eccCCChhHcC
Confidence 9986542 56778999999999999999873 45544 678999999998763 222233333 3
Q ss_pred ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185 242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT 321 (657)
Q Consensus 242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 321 (657)
.+.++.+++.++.-...+|.++..+ ++|+.|++.+|.-....+..+ ..+++|+.|++++|.-...++... ..
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~-----~~ 378 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGL-----CS 378 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhH-----hC
Confidence 4789999999886666677777665 999999999885332333223 347999999999994333333332 34
Q ss_pred cccccEEeccccccccccccccCCC--CCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLPA--GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN 399 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 399 (657)
+++|+.|+++++. ..+.+|. +.+++|+.|++++|. ++...|..+ ..+++|+.|+++++.-...+
T Consensus 379 ~~~L~~L~l~~n~-----l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~------- 444 (968)
T PLN00113 379 SGNLFKLILFSNS-----LEGEIPKSLGACRSLRRVRLQDNS-FSGELPSEF-TKLPLVYFLDISNNNLQGRI------- 444 (968)
T ss_pred cCCCCEEECcCCE-----ecccCCHHHhCCCCCCEEECcCCE-eeeECChhH-hcCCCCCEEECcCCcccCcc-------
Confidence 7899999999886 2333333 378999999999975 444456544 68999999999986432222
Q ss_pred ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185 400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH 479 (657)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~ 479 (657)
+.....+++|+.|++++|.-...++. ....++|+.|++++|. +....|..+..+++|++|+++++ .
T Consensus 445 --~~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-------~ 510 (968)
T PLN00113 445 --NSRKWDMPSLQMLSLARNKFFGGLPD----SFGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSEN-------K 510 (968)
T ss_pred --ChhhccCCCCcEEECcCceeeeecCc----ccccccceEEECcCCc-cCCccChhhhhhhccCEEECcCC-------c
Confidence 34456789999999999875554432 1235889999999974 55566888999999999999985 3
Q ss_pred ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185 480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS 559 (657)
Q Consensus 480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 559 (657)
+....|..+..+++|+.|++++|.-...+ +.. +..+++|+.|++++|.-...+| .....+++|+.
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~-~~~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~ 575 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQI-PAS-FSEMPVLSQLDLSQNQLSGEIP-------------KNLGNVESLVQ 575 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccC-Chh-HhCcccCCEEECCCCcccccCC-------------hhHhcCcccCE
Confidence 33344667788999999999998644333 333 5789999999999997554443 22335789999
Q ss_pred eEcCcCCCccccccCCCcceeeccccceeeeccCCCc
Q 006185 560 IKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGM 596 (657)
Q Consensus 560 L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l 596 (657)
|++++++-...+| .... +.++....+.+.+.+
T Consensus 576 l~ls~N~l~~~~p-~~~~----~~~~~~~~~~~n~~l 607 (968)
T PLN00113 576 VNISHNHLHGSLP-STGA----FLAINASAVAGNIDL 607 (968)
T ss_pred EeccCCcceeeCC-Ccch----hcccChhhhcCCccc
Confidence 9999998777787 4433 345555555555544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=7.6e-25 Score=254.15 Aligned_cols=347 Identities=24% Similarity=0.341 Sum_probs=252.9
Q ss_pred CCCCCCCccEEEccCCCc------c-ccCCCC-CC-CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185 12 SINTFEDLTGISLMFNDI------H-EVPDGL-EC-PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL 82 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~------~-~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~ 82 (657)
++..+++|+.|.+..+.. . .+|..+ .+ .+||.|.+.++.+..+|..+ ...+|++|++.++.+..+|..+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccc
Confidence 367899999998876532 1 456655 33 47999999999988999864 6799999999999999999999
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcE
Q 006185 83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEE 161 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~ 161 (657)
..+++|++|+++++..++.+..++.+++|++|++++|. +..+|..++++++|++|++++|..++.+|.. .++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCE
Confidence 99999999999998766666678999999999999984 7799999999999999999999999999985 38999999
Q ss_pred EEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185 162 LYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFN 241 (657)
Q Consensus 162 L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (657)
|++++|.... ..+. ...+|+.|+++++.+..+|....+++|+.|.+..+...... +
T Consensus 709 L~Lsgc~~L~-----------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~---~------- 764 (1153)
T PLN03210 709 LNLSGCSRLK-----------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW---E------- 764 (1153)
T ss_pred EeCCCCCCcc-----------cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhcc---c-------
Confidence 9999985321 2221 24688999999999888888777888888887653211100 0
Q ss_pred ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185 242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT 321 (657)
Q Consensus 242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 321 (657)
.+..++.......++|+.|++++|..+..++..+ ..+++|+.|++++|..++.+|... .
T Consensus 765 -------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~~------~ 823 (1153)
T PLN03210 765 -------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTGI------N 823 (1153)
T ss_pred -------------cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCCC------C
Confidence 0000111111222677777777776555544333 247778888888777777666543 2
Q ss_pred cccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA 401 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 401 (657)
+++|+.|++++|..+..+ | ...++|+.|++++ ..++. +|..+ ..+++|+.|++++|++++.+
T Consensus 824 L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~~L~Ls~-n~i~~-iP~si-~~l~~L~~L~L~~C~~L~~l--------- 885 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTF-----P-DISTNISDLNLSR-TGIEE-VPWWI-EKFSNLSFLDMNGCNNLQRV--------- 885 (1153)
T ss_pred ccccCEEECCCCCccccc-----c-ccccccCEeECCC-CCCcc-ChHHH-hcCCCCCEEECCCCCCcCcc---------
Confidence 677888888887765432 1 1246778888777 45555 45443 56788888888888877766
Q ss_pred ccccccCCcccEEecCCCcCcccc
Q 006185 402 KEETELFSSLEKLTLIDLPRMTDI 425 (657)
Q Consensus 402 ~~~~~~~~~L~~L~l~~c~~L~~l 425 (657)
+.....+++|+.+.+++|++|+.+
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CcccccccCCCeeecCCCcccccc
Confidence 444566777888888888877754
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.3e-24 Score=250.21 Aligned_cols=348 Identities=23% Similarity=0.293 Sum_probs=213.8
Q ss_pred CCCchhhcCCCCccEEEecCCcC-------CCCCccccCCC-CCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcc
Q 006185 53 VIPDPFFQGMKDLKVLDLGGIRM-------VSPPSSLSFLS-NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI 124 (657)
Q Consensus 53 ~~~~~~~~~l~~Lr~L~L~~~~~-------~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 124 (657)
.+....|.++++|++|.+..+.. ..+|..+..++ +||.|++.++.....|..+ ...+|++|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 45666688888899888876532 13677776664 5888988888766667666 568889999998888888
Q ss_pred cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCC-
Q 006185 125 PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK- 203 (657)
Q Consensus 125 p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 203 (657)
|.++..+++|++|++++|..++.+|. ++.+++|+.|++++|.... ..+..++.+++|+.|++++|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~-----------~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV-----------ELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc-----------ccchhhhccCCCCEEeCCCCCC
Confidence 88888888999999988877888875 7888889999988874322 566777888888888888754
Q ss_pred CccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeecccccc
Q 006185 204 GEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLEN 283 (657)
Q Consensus 204 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~ 283 (657)
.+.+|....+++|+.|++.++ ..+..
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc------------------------------------------------------~~L~~ 719 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGC------------------------------------------------------SRLKS 719 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCC------------------------------------------------------CCccc
Confidence 355555444555555554433 22111
Q ss_pred ccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccC-----CCCCCCCccEEEEe
Q 006185 284 IFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQL-----PAGCLSNVKRLDVV 358 (657)
Q Consensus 284 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~L~l~ 358 (657)
.+ . ..++|++|++.++ .++.+|... .+++|++|.+.++.... ++.... ....+++|+.|+++
T Consensus 720 ~p-~----~~~nL~~L~L~~n-~i~~lP~~~------~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 720 FP-D----ISTNISWLDLDET-AIEEFPSNL------RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred cc-c----ccCCcCeeecCCC-ccccccccc------cccccccccccccchhh-ccccccccchhhhhccccchheeCC
Confidence 11 0 1234555555554 333333322 14555555555443111 000000 01134567777777
Q ss_pred cCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCc
Q 006185 359 GCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNL 438 (657)
Q Consensus 359 ~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L 438 (657)
+|+.+.. +|..+ +.+++|+.|++++|..++.+ |... .+++|+.|++++|..++.++.. .++|
T Consensus 787 ~n~~l~~-lP~si-~~L~~L~~L~Ls~C~~L~~L---------P~~~-~L~sL~~L~Ls~c~~L~~~p~~------~~nL 848 (1153)
T PLN03210 787 DIPSLVE-LPSSI-QNLHKLEHLEIENCINLETL---------PTGI-NLESLESLDLSGCSRLRTFPDI------STNI 848 (1153)
T ss_pred CCCCccc-cChhh-hCCCCCCEEECCCCCCcCee---------CCCC-CccccCEEECCCCCcccccccc------cccc
Confidence 7666655 34433 56677777777777666655 3333 4666777777777666654221 3566
Q ss_pred cEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhccc
Q 006185 439 KKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV 518 (657)
Q Consensus 439 ~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~ 518 (657)
++|++++. .++.+ |..+..+++|+.|++.+|++++.++.. ...++
T Consensus 849 ~~L~Ls~n-~i~~i--------------------------------P~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~ 893 (1153)
T PLN03210 849 SDLNLSRT-GIEEV--------------------------------PWWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLK 893 (1153)
T ss_pred CEeECCCC-CCccC--------------------------------hHHHhcCCCCCEEECCCCCCcCccCcc--ccccc
Confidence 66666653 33333 233445666667777777766665332 34566
Q ss_pred CCcEEEEecCCCccee
Q 006185 519 RLESLEVSSCPTLQEI 534 (657)
Q Consensus 519 ~L~~L~i~~C~~l~~~ 534 (657)
+|+.+++++|.+++.+
T Consensus 894 ~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 894 HLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCeeecCCCcccccc
Confidence 6666777777666544
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=8e-29 Score=233.60 Aligned_cols=463 Identities=19% Similarity=0.263 Sum_probs=325.9
Q ss_pred CCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185 17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY 95 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~ 95 (657)
..+..+.+++|.++.+.... ++..|.+|.+++|...++|+++ +++..++.++.+++.+.++|+.++.+.+|+.|+.+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 35778899999998776666 8889999999999999999986 899999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185 96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES 175 (657)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g 175 (657)
+...+.|.+++.+..|+.++..++.+.++|++++++.+|..+++.+ +.++++|++.+ +++.|++|+...|-..
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i-~m~~L~~ld~~~N~L~----- 196 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI-AMKRLKHLDCNSNLLE----- 196 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHH-HHHHHHhcccchhhhh-----
Confidence 9988899999999999999999999999999999999999999999 67888888844 4999999998776543
Q ss_pred ccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcc-cc-cCcceEEeecc
Q 006185 176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF-NK-RCSRAMGLSQD 253 (657)
Q Consensus 176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~-~~l~~l~l~~~ 253 (657)
..|.+++.+..|.-|++..|++..+|+..+++.|++|.+..+ +...++... .+ +.+..++++.+
T Consensus 197 -------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-------~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 197 -------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-------QIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred -------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-------HHHhhHHHHhcccccceeeecccc
Confidence 788999999999999999999999998888899999998776 333333333 23 77888888887
Q ss_pred cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccc-cccccccccEEeccc
Q 006185 254 MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT-QRVTLRKLEWLFIRE 332 (657)
Q Consensus 254 ~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 332 (657)
.++++|+.+.-+ .+|+.|+++++ .++..++.++. + +|+.|.+.|++ ++.+-.+.... ....++.|+.= ..
T Consensus 263 -klke~Pde~clL-rsL~rLDlSNN-~is~Lp~sLgn--l-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~--~~ 333 (565)
T KOG0472|consen 263 -KLKEVPDEICLL-RSLERLDLSNN-DISSLPYSLGN--L-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK--IK 333 (565)
T ss_pred -ccccCchHHHHh-hhhhhhcccCC-ccccCCccccc--c-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh--hc
Confidence 788889888776 88999999877 45556666653 6 88888888884 32221111100 01112222220 00
Q ss_pred ccccccc-----cc-----ccCC-CCCCCCccEEEEecCCCcccccchhHHHhcc--cCcEEEEcccccceeee------
Q 006185 333 NQNFVEI-----CH-----GQLP-AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQ--NLQRLMVESCELLVSVF------ 393 (657)
Q Consensus 333 ~~~l~~~-----~~-----~~~~-~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~--~L~~L~l~~c~~l~~~~------ 393 (657)
+.++..- .. ...| .....+.+.|++++ ..++. .|...++... -....++++ .++.+++
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~l 410 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVEL 410 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHH
Confidence 0010000 00 0011 11455678888888 66666 5655543322 134455544 2222221
Q ss_pred ---------ecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchh
Q 006185 394 ---------EIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAE 464 (657)
Q Consensus 394 ---------~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~ 464 (657)
......++|..+..+++|..|++++.+ |-++ +...+.+..|+.|+|+.- ++..+ |..+.....++
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~L---P~e~~~lv~Lq~LnlS~N-rFr~l-P~~~y~lq~lE 484 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDL---PEEMGSLVRLQTLNLSFN-RFRML-PECLYELQTLE 484 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhc---chhhhhhhhhheeccccc-ccccc-hHHHhhHHHHH
Confidence 000111235556678888888888843 5555 334445667888888874 44443 66665556666
Q ss_pred hhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185 465 EMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP 529 (657)
Q Consensus 465 ~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 529 (657)
.+..++ .++..-.++++.++.+|.+|++.+ ..+..++|. ++++++|++|++.|.+
T Consensus 485 tllas~-------nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 485 TLLASN-------NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhcc-------ccccccChHHhhhhhhcceeccCC-CchhhCChh--hccccceeEEEecCCc
Confidence 665554 334444456677888888888866 457666555 6788888888888876
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.8e-25 Score=218.26 Aligned_cols=384 Identities=20% Similarity=0.210 Sum_probs=270.6
Q ss_pred ccEEEccCCCccccCCCC----CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185 19 LTGISLMFNDIHEVPDGL----ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD 94 (657)
Q Consensus 19 L~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~ 94 (657)
-+.|+++.+.+..+.... -.+.-++|++++|.+.++....|.++++|+.+++..|.++.+|.......||+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 356788888887764332 2345677999999988888888899999999999999999999888888889999999
Q ss_pred CCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185 95 YCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ 172 (657)
Q Consensus 95 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 172 (657)
+|...+. -+.+..++.||.||++.|.|+.+|.. +.+-.++++|++.+ +.++.+..+.+..+.+|-.|.++.|.+..
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNritt- 211 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITT- 211 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccc-
Confidence 9883332 26788889999999999998877754 77778899999999 66777776668888899999999887753
Q ss_pred cccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEe
Q 006185 173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGL 250 (657)
Q Consensus 173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 250 (657)
--+..++++++|+.|++..|.+..+... .++++|+.|.+..+.
T Consensus 212 ----------Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~------------------------- 256 (873)
T KOG4194|consen 212 ----------LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND------------------------- 256 (873)
T ss_pred ----------cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC-------------------------
Confidence 4455677799999999988887555433 667777777776552
Q ss_pred ecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEec
Q 006185 251 SQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFI 330 (657)
Q Consensus 251 ~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 330 (657)
|.++.++++-.+.++++|+|+.+ ++..+-..+-. ++..|+.|+++.| .++.+-.. .-...++|++|++
T Consensus 257 -----I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~N-aI~rih~d----~WsftqkL~~LdL 324 (873)
T KOG4194|consen 257 -----ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYN-AIQRIHID----SWSFTQKLKELDL 324 (873)
T ss_pred -----cccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchh-hhheeecc----hhhhcccceeEec
Confidence 23344444444477778887765 33333333222 4778888888888 55544221 1123788888888
Q ss_pred cccccccccccccCCCC---CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccccccc
Q 006185 331 RENQNFVEICHGQLPAG---CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL 407 (657)
Q Consensus 331 ~~~~~l~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 407 (657)
+++. +++ ++.+ .+..|++|.+++ +.++. +....+..+.+|++|++++- .+....... ...+..
T Consensus 325 s~N~-i~~-----l~~~sf~~L~~Le~LnLs~-Nsi~~-l~e~af~~lssL~~LdLr~N-~ls~~IEDa-----a~~f~g 390 (873)
T KOG4194|consen 325 SSNR-ITR-----LDEGSFRVLSQLEELNLSH-NSIDH-LAEGAFVGLSSLHKLDLRSN-ELSWCIEDA-----AVAFNG 390 (873)
T ss_pred cccc-ccc-----CChhHHHHHHHhhhhcccc-cchHH-HHhhHHHHhhhhhhhcCcCC-eEEEEEecc-----hhhhcc
Confidence 8875 332 2333 566788888888 56666 33444567888899988872 232221111 223456
Q ss_pred CCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhc
Q 006185 408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYR 470 (657)
Q Consensus 408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~ 470 (657)
+++|++|.+.+ .+++.|+... +..++.|++|++.+ .-+.++-|.+|... .|++|.+..
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krA--fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRA--FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred chhhhheeecC-ceeeecchhh--hccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 88899999988 5688875433 34578888888888 45666667778777 888887764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.1e-26 Score=230.56 Aligned_cols=361 Identities=20% Similarity=0.336 Sum_probs=267.5
Q ss_pred CC-CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCC--CCCccccCC
Q 006185 10 WP-SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFL 85 (657)
Q Consensus 10 ~~-~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l 85 (657)
+| ....+++++.|.|....+..+|+.+ .+.+|++|.+++|++.++..+ +..++.||.+.+..|+++ .+|..|..+
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred CchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhccc
Confidence 45 4667788888888888888888777 788888888888887777766 478888888888888874 478888888
Q ss_pred CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
..|.+|||++|...+.|..+.+-+++-+|++++|+|.++|.. +-+|+.|-+||+++ +.+..+|++ +.++.+|+.|++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhc
Confidence 888888888888666788888888888888888888888876 56788888888888 677788887 788888888888
Q ss_pred ccCccccccccccccccccchhhhcCCCCccEEEeecCCC--ccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185 165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG--EIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN 241 (657)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (657)
++|.+.. .....+..++.|+.|++++.+- ..+|.. ..+.+|..++++.+
T Consensus 181 s~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N----------------- 232 (1255)
T KOG0444|consen 181 SNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN----------------- 232 (1255)
T ss_pred CCChhhH-----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-----------------
Confidence 8886543 4455666677777777777653 445544 45566666666543
Q ss_pred ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccc
Q 006185 242 KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVT 321 (657)
Q Consensus 242 ~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 321 (657)
.+..+|+.+..+ ++|..|+|+++ .+++... ......+|++|+++.| .++.+|+....
T Consensus 233 -------------~Lp~vPecly~l-~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt~LP~avcK----- 289 (1255)
T KOG0444|consen 233 -------------NLPIVPECLYKL-RNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLTVLPDAVCK----- 289 (1255)
T ss_pred -------------CCCcchHHHhhh-hhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhccchHHHhh-----
Confidence 556678777776 88999999887 3343322 2234688999999999 78888876654
Q ss_pred cccccEEeccccccccccccccCCCC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN 399 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 399 (657)
++.|++|.+.++. ++ ...+|.| .+..|+.+...+ +++. +.|..+ ..|+.|+.|.++. ..+.++
T Consensus 290 L~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aan-N~LE-lVPEgl-cRC~kL~kL~L~~-NrLiTL------- 354 (1255)
T KOG0444|consen 290 LTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEGL-CRCVKLQKLKLDH-NRLITL------- 354 (1255)
T ss_pred hHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhhc-cccc-cCchhh-hhhHHHHHhcccc-cceeec-------
Confidence 8899999888774 32 2334444 777888888777 4454 478776 7899999999975 667666
Q ss_pred ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEec
Q 006185 400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVE 444 (657)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~ 444 (657)
|+.+..++-|+.|++...|+|.. +..+... -.+|+.-.|.
T Consensus 355 --PeaIHlL~~l~vLDlreNpnLVM-PPKP~da--~~~lefYNID 394 (1255)
T KOG0444|consen 355 --PEAIHLLPDLKVLDLRENPNLVM-PPKPNDA--RKKLEFYNID 394 (1255)
T ss_pred --hhhhhhcCCcceeeccCCcCccC-CCCcchh--hhcceeeecc
Confidence 88899999999999999999987 4433322 2455554444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.9e-25 Score=218.18 Aligned_cols=339 Identities=19% Similarity=0.211 Sum_probs=204.0
Q ss_pred CCccEEEccCCCccccCCC--CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEc
Q 006185 17 EDLTGISLMFNDIHEVPDG--LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRL 93 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l 93 (657)
...+.|++++|.+.++... .++++|+.+.+.+|.+..+|... +...||+.|+|.+|.|.++. +++..+..||.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 5566788888877765444 27778888888888777777632 44455788888877776653 45677777888888
Q ss_pred cCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccc
Q 006185 94 DYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHW 171 (657)
Q Consensus 94 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 171 (657)
+.|...+.+ ..+.+=.++++|++++|.|+.+-. .|..+.+|-+|.++. +.++.+|...+.++++|+.|++..|.+..
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceee
Confidence 877744444 556666777888888877776643 377777777777777 56777777766778888888777775532
Q ss_pred ccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcc--cccCcce
Q 006185 172 QFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENF--NKRCSRA 247 (657)
Q Consensus 172 ~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--~~~~l~~ 247 (657)
..--.+.++..|+.|.+..|++..+..+ ..+.++++|++..+.-.. +.+.+ ....++.
T Consensus 236 -----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-------vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 236 -----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-------VNEGWLFGLTSLEQ 297 (873)
T ss_pred -----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-------hhcccccccchhhh
Confidence 2224466677777777777776666555 556677777776552111 11111 2244555
Q ss_pred EEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccE
Q 006185 248 MGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW 327 (657)
Q Consensus 248 l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 327 (657)
|+++.| .|.++....++..++|+.|+|+++ .++...+. ....+..|++|.++.| .+..+-+. .+..+.+|++
T Consensus 298 L~lS~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~----af~~lssL~~ 369 (873)
T KOG4194|consen 298 LDLSYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEG----AFVGLSSLHK 369 (873)
T ss_pred hccchh-hhheeecchhhhcccceeEecccc-ccccCChh-HHHHHHHhhhhccccc-chHHHHhh----HHHHhhhhhh
Confidence 555554 333332222333366666666655 33333222 2234566666666666 44433222 3345667777
Q ss_pred EeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcc
Q 006185 328 LFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVES 385 (657)
Q Consensus 328 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~ 385 (657)
|+++.+.--.-+-.+..+...++.|++|.+.| ++++. +|..-+..+++||+|++.+
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~-I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS-IPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecC-ceeee-cchhhhccCcccceecCCC
Confidence 77766541000001222333577777777777 56666 4555556777777777776
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=6.6e-25 Score=228.08 Aligned_cols=481 Identities=22% Similarity=0.255 Sum_probs=271.7
Q ss_pred EEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCC
Q 006185 21 GISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHL 99 (657)
Q Consensus 21 ~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 99 (657)
+++++...++-||..+ ....+..|++..|.+...|-.+..+.-+|+.|++++|++...|..+..+.+|+.|+++.|...
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 3556666666666655 334466777777766665555555555677777777777777777777777777777777755
Q ss_pred CCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccccccc
Q 006185 100 PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDT 179 (657)
Q Consensus 100 ~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~ 179 (657)
..|.+.+++.+|++|.+.++.+..+|.++..+++|++|+++. +....+|.- +..+..+..+..++| ..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N-~~--------- 149 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNN-EK--------- 149 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcc-hh---------
Confidence 566777777777777777777777777777777777777777 556666655 666777777666666 11
Q ss_pred ccccchhhhcCCCCccEEEeecCCC-ccCCCCCCCCCccE-EEEEEcCccChhhHHHHHhhcccccCcceEEeecccchh
Q 006185 180 RSNAKFIELGALSRLTSLHIDIPKG-EIMPSDMSLPNLTS-FSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRIS 257 (657)
Q Consensus 180 ~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 257 (657)
+..++... ++.+++..+.. ..+..+ ..+++. |++..+. . ..++++.
T Consensus 150 -----~~~lg~~~-ik~~~l~~n~l~~~~~~~--i~~l~~~ldLr~N~------~-------------~~~dls~----- 197 (1081)
T KOG0618|consen 150 -----IQRLGQTS-IKKLDLRLNVLGGSFLID--IYNLTHQLDLRYNE------M-------------EVLDLSN----- 197 (1081)
T ss_pred -----hhhhcccc-chhhhhhhhhcccchhcc--hhhhheeeecccch------h-------------hhhhhhh-----
Confidence 11122222 44444444332 111111 112222 3333220 0 0000000
Q ss_pred hhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccc--c
Q 006185 258 ALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQ--N 335 (657)
Q Consensus 258 ~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~ 335 (657)
+.+|+.+....+ .+.... -.-++|+.|+...|+-. .....+ ...+|+.++++... +
T Consensus 198 ---------~~~l~~l~c~rn-~ls~l~-----~~g~~l~~L~a~~n~l~-~~~~~p------~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 198 ---------LANLEVLHCERN-QLSELE-----ISGPSLTALYADHNPLT-TLDVHP------VPLNLQYLDISHNNLSN 255 (1081)
T ss_pred ---------ccchhhhhhhhc-ccceEE-----ecCcchheeeeccCcce-eecccc------ccccceeeecchhhhhc
Confidence 123333322111 111010 01355666666666322 111111 14556666666543 1
Q ss_pred ccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEe
Q 006185 336 FVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLT 415 (657)
Q Consensus 336 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 415 (657)
+.+| .+.+++|+.+.+.+ +.+.. .|... ....+|+.|.+..| .++.+ |.....+.+|+.|+
T Consensus 256 lp~w------i~~~~nle~l~~n~-N~l~~-lp~ri-~~~~~L~~l~~~~n-el~yi---------p~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 256 LPEW------IGACANLEALNANH-NRLVA-LPLRI-SRITSLVSLSAAYN-ELEYI---------PPFLEGLKSLRTLD 316 (1081)
T ss_pred chHH------HHhcccceEecccc-hhHHh-hHHHH-hhhhhHHHHHhhhh-hhhhC---------CCcccccceeeeee
Confidence 1111 12456666666665 33333 33332 24455555555552 23333 44455577777777
Q ss_pred cCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCcc
Q 006185 416 LIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLV 495 (657)
Q Consensus 416 l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~ 495 (657)
++. .+|.+++...... ...+|+.|.++. .++...+...=.....|++|.+.+ +++.+.....+.++.+||
T Consensus 317 L~~-N~L~~lp~~~l~v-~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~Lylan-------N~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 317 LQS-NNLPSLPDNFLAV-LNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLAN-------NHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred ehh-ccccccchHHHhh-hhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhc-------Ccccccchhhhcccccee
Confidence 776 3455543311110 011233343332 344443222222256677777765 344444455677899999
Q ss_pred EEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCC
Q 006185 496 SITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSG 575 (657)
Q Consensus 496 ~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 575 (657)
.|++++ ..|.. +|.+.+..+..||+|+++|.. ++.++. ....+++|+.|.-.+ ..+.++| +-
T Consensus 387 VLhLsy-NrL~~-fpas~~~kle~LeeL~LSGNk-L~~Lp~-------------tva~~~~L~tL~ahs-N~l~~fP-e~ 448 (1081)
T KOG0618|consen 387 VLHLSY-NRLNS-FPASKLRKLEELEELNLSGNK-LTTLPD-------------TVANLGRLHTLRAHS-NQLLSFP-EL 448 (1081)
T ss_pred eeeecc-ccccc-CCHHHHhchHHhHHHhcccch-hhhhhH-------------HHHhhhhhHHHhhcC-Cceeech-hh
Confidence 999987 45766 477777899999999999964 777752 222578899988877 6788888 44
Q ss_pred CcceeeccccceeeeccCCCcce--ecCCCcccc-ceeceeEeccceeec
Q 006185 576 LHATVEFLALEALQIIDCPGMKT--FGYGNQLTP-KLLKGVEFGYCKYCW 622 (657)
Q Consensus 576 ~~~~~~~~sL~~L~i~~C~~l~~--lp~~~~~l~-~~L~~L~i~~C~~l~ 622 (657)
. .+++|+.+++ .|.+|+. +|.. .| +.||.|++++..++.
T Consensus 449 ~----~l~qL~~lDl-S~N~L~~~~l~~~---~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 449 A----QLPQLKVLDL-SCNNLSEVTLPEA---LPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred h----hcCcceEEec-ccchhhhhhhhhh---CCCcccceeeccCCcccc
Confidence 3 3699999999 5788886 3433 36 789999999888643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5.8e-25 Score=218.44 Aligned_cols=365 Identities=21% Similarity=0.235 Sum_probs=284.1
Q ss_pred CCCCCCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCc
Q 006185 13 INTFEDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLR 89 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~ 89 (657)
.+-++.+|-+++++|+++ .+|... .+..++-|-+....+..+|++. +.+.+|+.|.++.|++.++-..++.++.||
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 345788999999999987 788877 8999999999999999999984 999999999999999998888999999999
Q ss_pred EEEccCCCC--CCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185 90 TLRLDYCNH--LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167 (657)
Q Consensus 90 ~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (657)
.+++++|+. ...|..+-++..|.+||+++|.+++.|..+.+-+++-.|++++ +.+..+|...+.+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc
Confidence 999999982 3358999999999999999999999999999999999999999 7899999998899999999999998
Q ss_pred ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC--CCCCCCccEEEEEEcCccChhhHHHHHhhcccccCc
Q 006185 168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS--DMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCS 245 (657)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 245 (657)
.+. ..|..+..+.+|++|.+++|....+.- ..+++.|+.|.+++..
T Consensus 161 rLe------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-------------------- 208 (1255)
T KOG0444|consen 161 RLE------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-------------------- 208 (1255)
T ss_pred hhh------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc--------------------
Confidence 764 788899999999999999987643321 1334555555555431
Q ss_pred ceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccc
Q 006185 246 RAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKL 325 (657)
Q Consensus 246 ~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 325 (657)
..+..+|..+..+ .+|..++++.+ ++..++..+- .+++|+.|++++| .++.+..... .-.+|
T Consensus 209 --------RTl~N~Ptsld~l-~NL~dvDlS~N-~Lp~vPecly--~l~~LrrLNLS~N-~iteL~~~~~-----~W~~l 270 (1255)
T KOG0444|consen 209 --------RTLDNIPTSLDDL-HNLRDVDLSEN-NLPIVPECLY--KLRNLRRLNLSGN-KITELNMTEG-----EWENL 270 (1255)
T ss_pred --------chhhcCCCchhhh-hhhhhcccccc-CCCcchHHHh--hhhhhheeccCcC-ceeeeeccHH-----HHhhh
Confidence 1222345555555 78888888765 3333333322 4789999999999 6665543322 25789
Q ss_pred cEEeccccccccccccccCCCC--CCCCccEEEEecCCCcccc-cchhHHHhcccCcEEEEcccccceeeeecccccccc
Q 006185 326 EWLFIRENQNFVEICHGQLPAG--CLSNVKRLDVVGCGSMLKI-LPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAK 402 (657)
Q Consensus 326 ~~L~l~~~~~l~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~-~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 402 (657)
+.|+++.+. + ..+|.. .++.|++|.+.+ ++++-. +|..+ +.+..|+.+...+ ..++-+ |
T Consensus 271 EtLNlSrNQ-L-----t~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGI-GKL~~Levf~aan-N~LElV---------P 332 (1255)
T KOG0444|consen 271 ETLNLSRNQ-L-----TVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGI-GKLIQLEVFHAAN-NKLELV---------P 332 (1255)
T ss_pred hhhccccch-h-----ccchHHHhhhHHHHHHHhcc-CcccccCCccch-hhhhhhHHHHhhc-cccccC---------c
Confidence 999999885 2 233443 778899988887 444322 45554 7788888888877 455544 8
Q ss_pred cccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccc
Q 006185 403 EETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQ 451 (657)
Q Consensus 403 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~ 451 (657)
+++..|+.|++|.+.. ..|..+ +...+-++-|+.|++..-|+|.-
T Consensus 333 EglcRC~kL~kL~L~~-NrLiTL---PeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDH-NRLITL---PEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hhhhhhHHHHHhcccc-cceeec---hhhhhhcCCcceeeccCCcCccC
Confidence 8999999999999986 555555 44556689999999999998864
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=4.6e-25 Score=208.33 Aligned_cols=387 Identities=20% Similarity=0.275 Sum_probs=196.3
Q ss_pred CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL 91 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L 91 (657)
+..+..++.++.++|.+..+|... ...+++.+++++|.+..+++++ +.+..|..++..+|++.++|..+.++..|..|
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence 444444444444444444444443 4444444444444444444442 34444444444444444444444444444444
Q ss_pred EccCCC-----------------------CCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCC
Q 006185 92 RLDYCN-----------------------HLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELI 148 (657)
Q Consensus 92 ~l~~~~-----------------------~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~ 148 (657)
++.++. ..+.|+.++.+.+|..|+++.+++..+| +|+.+..|.+|++.. +.++.+
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~l 243 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEML 243 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhh
Confidence 444444 3334444444444444444444444444 344444444444444 334444
Q ss_pred chhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcCcc
Q 006185 149 PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEED 227 (657)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 227 (657)
|.+....+.++..||++.|.++ +.|.++..+++|..|+++.|.+..+|.. .++ +|+.|.+.+++-.
T Consensus 244 pae~~~~L~~l~vLDLRdNklk------------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHHHhcccccceeeeccccccc------------cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 5443345566666666665544 5666666667777777777776666655 344 6666666665411
Q ss_pred Chh------------hHHHH------------------------HhhcccccCcceEEeecccchhhhHHHHHHHH--cc
Q 006185 228 TLN------------DFIEL------------------------FLENFNKRCSRAMGLSQDMRISALHSWIKNLL--LR 269 (657)
Q Consensus 228 ~~~------------~~~~~------------------------~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~--~~ 269 (657)
+.. ++... +++.-.....+.+++++. .++.+|+.++..- .-
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcc
Confidence 100 00000 000001123344444443 6677888777652 22
Q ss_pred ccEEEEeeccccccccccccccccccceE-EEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCC--
Q 006185 270 SEILALIEVNDLENIFSNLANDDFNELMF-LYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA-- 346 (657)
Q Consensus 270 L~~L~L~~~~~l~~~~~~l~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-- 346 (657)
.+..+++.+ .+.+.+..+.. +..+.+ +.++++ .+..++.. ...+++|..|+++++. -..+|.
T Consensus 390 Vt~VnfskN-qL~elPk~L~~--lkelvT~l~lsnn-~isfv~~~-----l~~l~kLt~L~L~NN~------Ln~LP~e~ 454 (565)
T KOG0472|consen 390 VTSVNFSKN-QLCELPKRLVE--LKELVTDLVLSNN-KISFVPLE-----LSQLQKLTFLDLSNNL------LNDLPEEM 454 (565)
T ss_pred eEEEecccc-hHhhhhhhhHH--HHHHHHHHHhhcC-ccccchHH-----HHhhhcceeeecccch------hhhcchhh
Confidence 666777665 33444433221 222322 333333 44433332 3357888888888775 223333
Q ss_pred CCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCccccc
Q 006185 347 GCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIW 426 (657)
Q Consensus 347 ~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 426 (657)
+.+-.||.|+|+.. .... .|... .....|+.+-.++ .++..+. +.++..+..|..|++.+ ..+..+
T Consensus 455 ~~lv~Lq~LnlS~N-rFr~-lP~~~-y~lq~lEtllas~-nqi~~vd--------~~~l~nm~nL~tLDL~n-Ndlq~I- 520 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFN-RFRM-LPECL-YELQTLETLLASN-NQIGSVD--------PSGLKNMRNLTTLDLQN-NDLQQI- 520 (565)
T ss_pred hhhhhhheeccccc-cccc-chHHH-hhHHHHHHHHhcc-ccccccC--------hHHhhhhhhcceeccCC-CchhhC-
Confidence 36677888888885 4443 34433 2233344443333 3444442 34477888888888887 446665
Q ss_pred CCCCcccccCCccEEEeccCc
Q 006185 427 KGDTQFVSLHNLKKVRVEECD 447 (657)
Q Consensus 427 ~~~~~~~~~~~L~~L~i~~C~ 447 (657)
+...+++.+|++|++.+-|
T Consensus 521 --Pp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 521 --PPILGNMTNLRHLELDGNP 539 (565)
T ss_pred --ChhhccccceeEEEecCCc
Confidence 3445678889999888865
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-24 Score=226.34 Aligned_cols=464 Identities=21% Similarity=0.234 Sum_probs=258.0
Q ss_pred CCCCCC-CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185 6 ELKDWP-SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL 82 (657)
Q Consensus 6 ~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~ 82 (657)
.+.-+| .+-.-..+.+|++..|.+-..|-.+ +.-+|++|++++|.+..+|..+ ..+.+|+.|.++.|.|.+.|.++
T Consensus 9 ~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~ 87 (1081)
T KOG0618|consen 9 QLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSC 87 (1081)
T ss_pred cCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhHhhCchhh
Confidence 444455 2333445788888888876655222 4556999999999988888875 78899999999999998899888
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
.++.+|++|+|.++....+|.++..+++|++|++++|.+...|..+..+..+..+..+++..+..++.. . .+++
T Consensus 88 ~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~ 161 (1081)
T KOG0618|consen 88 SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKL 161 (1081)
T ss_pred hhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhh
Confidence 899999999999888777888999999999999999988888887777777777777764333333221 1 3444
Q ss_pred EcccCccccccccc-------ccccc-ccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHH
Q 006185 163 YMSHSFCHWQFESE-------EDTRS-NAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIE 234 (657)
Q Consensus 163 ~l~~~~~~~~~~g~-------~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 234 (657)
++..+.+...+.+- -+-.. ......+..+.+|+.+....+....+. ..-++|+.|....+.-.
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~------- 232 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLT------- 232 (1081)
T ss_pred hhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcce-------
Confidence 44333222100000 00000 000233344444444444443322111 11234444444433111
Q ss_pred HHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecc
Q 006185 235 LFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSL 314 (657)
Q Consensus 235 ~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 314 (657)
.......+..+.+++++.+ .+..+|+|+... .+|+.+...++ .++..+.... ...+|+.|.+..| .++.++...
T Consensus 233 ~~~~~p~p~nl~~~dis~n-~l~~lp~wi~~~-~nle~l~~n~N-~l~~lp~ri~--~~~~L~~l~~~~n-el~yip~~l 306 (1081)
T KOG0618|consen 233 TLDVHPVPLNLQYLDISHN-NLSNLPEWIGAC-ANLEALNANHN-RLVALPLRIS--RITSLVSLSAAYN-ELEYIPPFL 306 (1081)
T ss_pred eeccccccccceeeecchh-hhhcchHHHHhc-ccceEecccch-hHHhhHHHHh--hhhhHHHHHhhhh-hhhhCCCcc
Confidence 1111222355666666665 555577777766 77777777655 3333332222 2566666666666 566555544
Q ss_pred ccccccccccccEEeccccccccccccccCCCCCC---C-CccEEEEecCCCcccccchhHHHhcccCcEEEEcccccce
Q 006185 315 ERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCL---S-NVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLV 390 (657)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~---~-~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~ 390 (657)
. .+.+|+.|++..+. +. .+|...+ . .|..|..+. .++.. .|..--..++.|+.|.+.+ ..++
T Consensus 307 e-----~~~sL~tLdL~~N~-L~-----~lp~~~l~v~~~~l~~ln~s~-n~l~~-lp~~~e~~~~~Lq~Lylan-N~Lt 372 (1081)
T KOG0618|consen 307 E-----GLKSLRTLDLQSNN-LP-----SLPDNFLAVLNASLNTLNVSS-NKLST-LPSYEENNHAALQELYLAN-NHLT 372 (1081)
T ss_pred c-----ccceeeeeeehhcc-cc-----ccchHHHhhhhHHHHHHhhhh-ccccc-cccccchhhHHHHHHHHhc-Cccc
Confidence 3 26667777766553 11 1121111 1 123333322 22222 2222122445555555555 1221
Q ss_pred eeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhc
Q 006185 391 SVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYR 470 (657)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~ 470 (657)
+- ..+.+..+++||.|++++ ..|.+++... ..++..|++|.++| .+|+.+ |..++.|..|++|...+
T Consensus 373 d~--------c~p~l~~~~hLKVLhLsy-NrL~~fpas~--~~kle~LeeL~LSG-NkL~~L-p~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 373 DS--------CFPVLVNFKHLKVLHLSY-NRLNSFPASK--LRKLEELEELNLSG-NKLTTL-PDTVANLGRLHTLRAHS 439 (1081)
T ss_pred cc--------chhhhccccceeeeeecc-cccccCCHHH--HhchHHhHHHhccc-chhhhh-hHHHHhhhhhHHHhhcC
Confidence 11 023345566666666666 3344442211 22455666666666 566665 46666666666666654
Q ss_pred ccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcc-cCCcEEEEecCCC
Q 006185 471 NRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSL-VRLESLEVSSCPT 530 (657)
Q Consensus 471 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~~ 530 (657)
.. ....| .+..++.|+.+++ +|.+|+.+.... ... +.|++|+++|...
T Consensus 440 N~--------l~~fP-e~~~l~qL~~lDl-S~N~L~~~~l~~--~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 NQ--------LLSFP-ELAQLPQLKVLDL-SCNNLSEVTLPE--ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Cc--------eeech-hhhhcCcceEEec-ccchhhhhhhhh--hCCCcccceeeccCCcc
Confidence 21 11223 4556777888888 567776653321 122 6788888887764
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-18 Score=191.99 Aligned_cols=139 Identities=35% Similarity=0.484 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCc--CcCCCchhhcCCCCccEEEecCCc-CCCCC
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNH--LLVIPDPFFQGMKDLKVLDLGGIR-MVSPP 79 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~L~~~~-~~~lp 79 (657)
++.++.+.|........|+..+.+|.+..++....+++|++|-+.++. +..++..+|..+++||+|||++|. +.++|
T Consensus 509 ~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 509 DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred CCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 445677788888889999999999999999988888899999999986 568888889999999999999863 56777
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccC
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTD 141 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~ 141 (657)
+.|+++.|||||+++++.....|..+++|+.|.+|++..+.-. .+|..+..+.+||+|.+..
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 7777777777766666664444555555555555555544321 2222233344444444433
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-19 Score=151.82 Aligned_cols=166 Identities=30% Similarity=0.466 Sum_probs=120.1
Q ss_pred cccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCC
Q 006185 30 HEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELS 109 (657)
Q Consensus 30 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 109 (657)
.+++..+.+.+.+.|.+++|.++.+|+.+ .++++|++|++++|+++++|.+++.++.||.|++.-|.....|..||.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 35555556677777777777777777765 67777777777777777777777777777777777776556677777777
Q ss_pred CCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhh
Q 006185 110 GLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIE 187 (657)
Q Consensus 110 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~ 187 (657)
-|++||+.++++. .+|..|-.+..|+.|++++ +....+|++ ++++++||.|.+..|... ..+.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll------------~lpke 168 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL------------SLPKE 168 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh------------hCcHH
Confidence 7777777777665 6777777777777777777 566677777 777777777777776543 56777
Q ss_pred hcCCCCccEEEeecCCCccCCCC
Q 006185 188 LGALSRLTSLHIDIPKGEIMPSD 210 (657)
Q Consensus 188 l~~l~~L~~L~l~~~~~~~~~~~ 210 (657)
++.+..|++|++.+|....+|..
T Consensus 169 ig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHhcccceeeecChh
Confidence 77777777888777777666654
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-19 Score=150.37 Aligned_cols=162 Identities=24% Similarity=0.409 Sum_probs=149.4
Q ss_pred CCCCCCCCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF 84 (657)
Q Consensus 6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~ 84 (657)
.+.++|.+..+..++.|.+++|.++.+|..+ .+++|++|++++|++.++|.++ +.+++||.|++.-|++..+|..|+.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCC
Confidence 4566788889999999999999999999888 9999999999999999999986 9999999999999999999999999
Q ss_pred CCCCcEEEccCCCCC--CCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 85 LSNLRTLRLDYCNHL--PDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 85 l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
++-|++||+.+|+.- ..|..|..+..|+-|.++.++++-+|..++++++||.|.+++ +.+-++|.+ ++.++.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHH
Confidence 999999999999833 358888889999999999999999999999999999999999 667789999 9999999999
Q ss_pred EcccCccc
Q 006185 163 YMSHSFCH 170 (657)
Q Consensus 163 ~l~~~~~~ 170 (657)
.+.+|...
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 99998764
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.64 E-value=1.7e-18 Score=165.47 Aligned_cols=319 Identities=18% Similarity=0.194 Sum_probs=179.6
Q ss_pred ccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCC
Q 006185 268 LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAG 347 (657)
Q Consensus 268 ~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 347 (657)
..|+.|.+.+|....+.........+|++++|.+.+|..+++ .........+++|+.+.+..|..|++.....+. .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-E 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHH-H
Confidence 456666666665443332222223456666666666543331 111111223555555555555555443222111 1
Q ss_pred CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccC
Q 006185 348 CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWK 427 (657)
Q Consensus 348 ~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 427 (657)
.+++|++|.++.|+.+++-....+...+..++++...||..++.- .. ...-...+.+.++++.+|..+++...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le----~l---~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE----AL---LKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH----HH---HHHhccChHhhccchhhhccccchHH
Confidence 355555555555555554333333344445555555555443211 00 00012334444555555555544211
Q ss_pred CCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcce
Q 006185 428 GDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRN 507 (657)
Q Consensus 428 ~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~ 507 (657)
.. ....+..|+.|..++|..+++..-..++. ..++|+.|.+.+|.++++
T Consensus 287 ~~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------------------------------~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 287 WL-IACGCHALQVLCYSSCTDITDEVLWALGQ------------------------------HCHNLQVLELSGCQQFSD 335 (483)
T ss_pred HH-HhhhhhHhhhhcccCCCCCchHHHHHHhc------------------------------CCCceEEEeccccchhhh
Confidence 00 11124455555555555544432222221 568999999999999998
Q ss_pred ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc-----ccCCCcceeec
Q 006185 508 LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF-----SSSGLHATVEF 582 (657)
Q Consensus 508 l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~~~~~~ 582 (657)
........+.+.|+.+++.+|..+..- .+.++.. ++|.||.|.++.|..+++- . .+.. ..
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~------~C~~lr~lslshce~itD~gi~~l~-~~~c---~~ 400 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDG-----TLASLSR------NCPRLRVLSLSHCELITDEGIRHLS-SSSC---SL 400 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhh-----hHhhhcc------CCchhccCChhhhhhhhhhhhhhhh-hccc---cc
Confidence 876666778999999999999876533 1222222 7999999999999988875 2 2223 45
Q ss_pred cccceeeeccCCCcceecCCCccccceeceeEeccceeeccCchhHHHHHHHHhhhhhhHHHhhhcCCCCCCcCC
Q 006185 583 LALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYVYNEKKIWEKQAMKSGISSGDYFL 657 (657)
Q Consensus 583 ~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~~~~~~~~~~i~~ip~v~~~~~~~ 657 (657)
..|+.+++.+||.+++-........+.||++++.+|..... ..+ -....|.|++.+..||.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk----~~i----------~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK----EAI----------SRFATHLPNIKVHAYFA 461 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh----hhh----------HHHHhhCccceehhhcc
Confidence 78999999999999874433333357899999999985441 122 23347889999999984
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=9.8e-15 Score=157.79 Aligned_cols=257 Identities=19% Similarity=0.161 Sum_probs=171.9
Q ss_pred CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185 17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~ 96 (657)
.+-..|+++.+.++.+|..+. ++|+.|++.+|.+..+|. ..++|++|++++|+++.+|.. ..+|+.|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 456678888888888887653 478889999888888875 257889999999988888753 357888889888
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE 176 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~ 176 (657)
.....|.. ..+|+.|++++|.++.+|.. .++|++|++++| .+..+|.. ..+|+.|++++|.+.
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~------ 335 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLT------ 335 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccc------
Confidence 74444442 25678888999988888863 467889999884 56666642 235777888777553
Q ss_pred cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccch
Q 006185 177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRI 256 (657)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 256 (657)
.++. -..+|+.|++++|++..+|.. ..+|+.|++.++.-..
T Consensus 336 ------~LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~---------------------------- 376 (788)
T PRK15387 336 ------SLPT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS---------------------------- 376 (788)
T ss_pred ------cccc---cccccceEecCCCccCCCCCC--Ccccceehhhcccccc----------------------------
Confidence 1221 124788899988888777754 4567777766542111
Q ss_pred hhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccc
Q 006185 257 SALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNF 336 (657)
Q Consensus 257 ~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 336 (657)
+|.. ..+|+.|+++++ .++.++ . ..++|+.|++++| .+..+|.. +.+|+.|+++++. +
T Consensus 377 --LP~l----~~~L~~LdLs~N-~Lt~LP-~----l~s~L~~LdLS~N-~LssIP~l--------~~~L~~L~Ls~Nq-L 434 (788)
T PRK15387 377 --LPAL----PSGLKELIVSGN-RLTSLP-V----LPSELKELMVSGN-RLTSLPML--------PSGLLSLSVYRNQ-L 434 (788)
T ss_pred --Cccc----ccccceEEecCC-cccCCC-C----cccCCCEEEccCC-cCCCCCcc--------hhhhhhhhhccCc-c
Confidence 2211 145677777665 333322 1 1357888888888 56655432 4567788888764 3
Q ss_pred cccccccCCC--CCCCCccEEEEecCCCccc
Q 006185 337 VEICHGQLPA--GCLSNVKRLDVVGCGSMLK 365 (657)
Q Consensus 337 ~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~ 365 (657)
+ .+|. ..+++|+.|++++++ ++.
T Consensus 435 t-----~LP~sl~~L~~L~~LdLs~N~-Ls~ 459 (788)
T PRK15387 435 T-----RLPESLIHLSSETTVNLEGNP-LSE 459 (788)
T ss_pred c-----ccChHHhhccCCCeEECCCCC-CCc
Confidence 3 2333 367788888888854 443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=3.6e-15 Score=162.22 Aligned_cols=179 Identities=19% Similarity=0.298 Sum_probs=127.1
Q ss_pred CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185 17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~ 96 (657)
.+.+.|+++++.++.+|..+ .++|+.|++++|.+..+|..++ .+|++|++++|+++++|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 56778899888888888754 2578899999998888887653 578999999998888887664 47889999988
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE 176 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~ 176 (657)
.....|..+. .+|++|++++|.++.+|..+. .+|++|++++| .++.+|.. +. .+|++|++++|.+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt------ 317 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT------ 317 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc------
Confidence 8666666554 478899999888888887665 47888888884 56677754 22 46777888777553
Q ss_pred cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185 177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 224 (657)
..+..+ .++|+.|++..|.+..+|... .++|+.|+++++
T Consensus 318 ------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N 356 (754)
T PRK15370 318 ------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKN 356 (754)
T ss_pred ------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCC
Confidence 122212 246777777777665555432 245555555544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.5e-14 Score=156.28 Aligned_cols=254 Identities=20% Similarity=0.147 Sum_probs=142.2
Q ss_pred CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCC
Q 006185 40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKS 119 (657)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 119 (657)
+-..|+++++.+..+|+.+. ++|+.|++++|+++.+|.. .++|++|++++|.....|.. ..+|++|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 45567777777777776542 3677777777777766642 45677777777764444432 356677777777
Q ss_pred CCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEe
Q 006185 120 DVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHI 199 (657)
Q Consensus 120 ~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l 199 (657)
.++.+|... .+|+.|++++ +.++.+|.. .++|++|++++|.+. ..+. ...+|+.|++
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~------------~Lp~---lp~~L~~L~L 329 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLA------------SLPA---LPSELCKLWA 329 (788)
T ss_pred chhhhhhch---hhcCEEECcC-Ccccccccc----ccccceeECCCCccc------------cCCC---Cccccccccc
Confidence 777666532 4566777777 345566542 356777777776543 1111 1134666667
Q ss_pred ecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeecc
Q 006185 200 DIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVN 279 (657)
Q Consensus 200 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~ 279 (657)
.+|.+..+|.. ..+|+.|+++++.-.. +|.. ..+|+.|.+.++
T Consensus 330 s~N~L~~LP~l--p~~Lq~LdLS~N~Ls~------------------------------LP~l----p~~L~~L~Ls~N- 372 (788)
T PRK15387 330 YNNQLTSLPTL--PSGLQELSVSDNQLAS------------------------------LPTL----PSELYKLWAYNN- 372 (788)
T ss_pred ccCcccccccc--ccccceEecCCCccCC------------------------------CCCC----Ccccceehhhcc-
Confidence 77766666543 2456666666542111 1110 134555555544
Q ss_pred ccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEec
Q 006185 280 DLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVG 359 (657)
Q Consensus 280 ~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 359 (657)
.+..+ |. ...+|+.|++++| .+..++.. .++|+.|+++++. ++. +|. .+.+|+.|++++
T Consensus 373 ~L~~L-P~----l~~~L~~LdLs~N-~Lt~LP~l--------~s~L~~LdLS~N~-Lss-----IP~-l~~~L~~L~Ls~ 431 (788)
T PRK15387 373 RLTSL-PA----LPSGLKELIVSGN-RLTSLPVL--------PSELKELMVSGNR-LTS-----LPM-LPSGLLSLSVYR 431 (788)
T ss_pred ccccC-cc----cccccceEEecCC-cccCCCCc--------ccCCCEEEccCCc-CCC-----CCc-chhhhhhhhhcc
Confidence 23322 21 1346777777776 45444332 4567777777764 321 222 234667777776
Q ss_pred CCCcccccchhHHHhcccCcEEEEccc
Q 006185 360 CGSMLKILPSHLVQSFQNLQRLMVESC 386 (657)
Q Consensus 360 c~~l~~~~p~~~~~~~~~L~~L~l~~c 386 (657)
+.++. +|..+ ..+++|+.|++++.
T Consensus 432 -NqLt~-LP~sl-~~L~~L~~LdLs~N 455 (788)
T PRK15387 432 -NQLTR-LPESL-IHLSSETTVNLEGN 455 (788)
T ss_pred -Ccccc-cChHH-hhccCCCeEECCCC
Confidence 34554 45443 46677777777763
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=2.1e-14 Score=156.31 Aligned_cols=191 Identities=19% Similarity=0.294 Sum_probs=150.3
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS 83 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~ 83 (657)
+.+++.+|.. -.+.++.|++++|.++.+|.... ++|++|++++|.+..+|..+. .+|+.|++++|++.++|..+.
T Consensus 187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP 261 (754)
T ss_pred CCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh
Confidence 3467777741 24789999999999999987653 689999999999999988653 579999999999999998775
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~ 163 (657)
.+|++|++++|.....|..+. .+|++|++++|.++.+|..+. .+|++|++++ +.+..+|.. + .++|+.|+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~ 331 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLE 331 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceecc
Confidence 589999999998555666554 589999999999999987664 4799999999 567778764 2 36899999
Q ss_pred cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185 164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 224 (657)
+++|.+. .++..+. ++|+.|++++|.+..+|... .++|+.|++.++
T Consensus 332 Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N 377 (754)
T PRK15370 332 AGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRN 377 (754)
T ss_pred ccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCC
Confidence 9998654 2333332 68999999999987776542 357777777765
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=3.3e-16 Score=148.69 Aligned_cols=121 Identities=26% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecC-CcCCCCCc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGG-IRMVSPPS 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp~ 80 (657)
+.+++++|.- -.+.-..+.|..|+|+.||+.. .+++||.|++++|.+..|.+..|.+++.|-.|-+.+ |+|+++|.
T Consensus 55 ~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 55 GKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4456666621 2345555667677777776665 666777777777776666666667776666665555 56666653
Q ss_pred -cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccc
Q 006185 81 -SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIP 125 (657)
Q Consensus 81 -~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp 125 (657)
.|+++..|+-|.+.-|...-. ...+..+++|..|.+..+.+..++
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~ 180 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC 180 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc
Confidence 455666666555555441111 134444444544444444444433
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-14 Score=138.29 Aligned_cols=261 Identities=23% Similarity=0.262 Sum_probs=189.1
Q ss_pred CCCCCCCCcc--EEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCC
Q 006185 11 PSINTFEDLT--GISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSN 87 (657)
Q Consensus 11 ~~~~~~~~L~--~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~ 87 (657)
|+-+.++... .++.+..++++||..+- +.-..+.+..|.+..+|+.+|+.+++||+|||+.|+|+.+ |..|..+..
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~ 116 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS 116 (498)
T ss_pred CCCcccCCCCCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHh
Confidence 5555666643 35666677888887653 2567889999999999999999999999999999999875 788999999
Q ss_pred CcEEEccCCCCCCC-C-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 88 LRTLRLDYCNHLPD-L-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 88 L~~L~l~~~~~~~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
|-.|-+.+++.+++ | ..|++|..|+.|.+.-+.+.-+++ .+..+++|..|.+.+ +.+..++...+..+..++.+.+
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhh
Confidence 98888888554554 5 779999999999999999886554 488899999999999 6677777766777777777776
Q ss_pred ccCc------ccccc----------cc----------------------------c------cccc-cccchhhhcCCCC
Q 006185 165 SHSF------CHWQF----------ES----------------------------E------EDTR-SNAKFIELGALSR 193 (657)
Q Consensus 165 ~~~~------~~~~~----------~g----------------------------~------~~~~-~~~~~~~l~~l~~ 193 (657)
..+. +.|.. .| . .+.. ...-..-++.+++
T Consensus 196 A~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 196 AQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN 275 (498)
T ss_pred hcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence 5543 11100 00 0 0001 1122234788999
Q ss_pred ccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHcccc
Q 006185 194 LTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSE 271 (657)
Q Consensus 194 L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~ 271 (657)
|++|++++|.++.+... .+...+++|.+..+ +++.+...++..+..|+
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N------------------------------~l~~v~~~~f~~ls~L~ 325 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRN------------------------------KLEFVSSGMFQGLSGLK 325 (498)
T ss_pred ceEeccCCCccchhhhhhhcchhhhhhhhcCcc------------------------------hHHHHHHHhhhccccce
Confidence 99999999999877765 67788888888765 34445556666668888
Q ss_pred EEEEeeccccccccccccccccccceEEEeecCC
Q 006185 272 ILALIEVNDLENIFSNLANDDFNELMFLYIFGCN 305 (657)
Q Consensus 272 ~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~ 305 (657)
.|+|.++ +++.+.|. .++....|.+|++-.|+
T Consensus 326 tL~L~~N-~it~~~~~-aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 326 TLSLYDN-QITTVAPG-AFQTLFSLSTLNLLSNP 357 (498)
T ss_pred eeeecCC-eeEEEecc-cccccceeeeeehccCc
Confidence 8988877 44444443 22357788888887763
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=2.7e-15 Score=143.81 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=158.0
Q ss_pred cceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHh
Q 006185 295 ELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQS 374 (657)
Q Consensus 295 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~ 374 (657)
.|+.|.++||..... .........+|+++.|.+.+|.++++.....+ ...++.|+.|.+..|..+++..-..+...
T Consensus 139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 456666666643332 11111233455555555555554443211111 11455555555555555555444444455
Q ss_pred cccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc
Q 006185 375 FQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP 454 (657)
Q Consensus 375 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~ 454 (657)
|++|++|.++.|+.++. .+. ..-...+..++++...+|..+.. -........++-+.++++.+|..+++.
T Consensus 215 C~kL~~lNlSwc~qi~~----~gv---~~~~rG~~~l~~~~~kGC~e~~l-e~l~~~~~~~~~i~~lnl~~c~~lTD~-- 284 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG----NGV---QALQRGCKELEKLSLKGCLELEL-EALLKAAAYCLEILKLNLQHCNQLTDE-- 284 (483)
T ss_pred hhhHHHhhhccCchhhc----Ccc---hHHhccchhhhhhhhcccccccH-HHHHHHhccChHhhccchhhhccccch--
Confidence 55555555555555443 111 11122333445554445543332 000111112333444444455444443
Q ss_pred cccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCccee
Q 006185 455 ANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEI 534 (657)
Q Consensus 455 ~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~ 534 (657)
. +|. .-..+..|+.|..++|.++.+.....+.++.++|+.+.+.+|..+...
T Consensus 285 -----------------------~-~~~----i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 285 -----------------------D-LWL----IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred -----------------------H-HHH----HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 1 000 011567899999999999988766677788999999999999987644
Q ss_pred eeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCccee-----cCCCccccce
Q 006185 535 IMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTF-----GYGNQLTPKL 609 (657)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~l-----p~~~~~l~~~ 609 (657)
+...+.. +++.|+.+++.+|...++-. .... ..++|.||+|.+++|..+++- ....-.+ ..
T Consensus 337 -----~ft~l~r------n~~~Le~l~~e~~~~~~d~t-L~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~-~~ 402 (483)
T KOG4341|consen 337 -----GFTMLGR------NCPHLERLDLEECGLITDGT-LASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL-EG 402 (483)
T ss_pred -----hhhhhhc------CChhhhhhcccccceehhhh-Hhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccc-cc
Confidence 4444444 78999999999998776653 2223 337999999999999999985 2211122 55
Q ss_pred eceeEeccceeeccCch
Q 006185 610 LKGVEFGYCKYCWTGNL 626 (657)
Q Consensus 610 L~~L~i~~C~~l~~~~l 626 (657)
|..+++.+||.+++..+
T Consensus 403 l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATL 419 (483)
T ss_pred cceeeecCCCCchHHHH
Confidence 88999999998875433
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1.7e-12 Score=143.84 Aligned_cols=134 Identities=25% Similarity=0.354 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCCccEEEccCCC--ccccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 7 LKDWPSINTFEDLTGISLMFND--IHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 7 l~~~~~~~~~~~L~~L~l~~~~--~~~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+..++.-..++++++|-+..|. +..++..+ .++.||+||+++|.-. .+|..+ +++-+||||+++++.+..+|..
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchH
Confidence 3444544566789999999996 66777653 7999999999987644 899986 9999999999999999999999
Q ss_pred ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccC
Q 006185 82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTD 141 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~ 141 (657)
+++++.|.+|++..+.....+ .....+.+||+|.+...... ..-..+.++.+|+.+....
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999999999999999866654 55666999999999887633 1223345556666665544
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=4.3e-12 Score=112.41 Aligned_cols=115 Identities=27% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc-c
Q 006185 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL-S 83 (657)
Q Consensus 6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~-~ 83 (657)
.+++.+.+-...++|.|+|.+|.|+.+.... .+.+|++|++++|.+.++.. +..+++|++|++++|.++++...+ .
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHH
Confidence 3445555555566677777777776665544 46667777777777766654 566777777777777776665544 3
Q ss_pred CCCCCcEEEccCCCC--CCCCcccCCCCCCCEEEeeCCCCC
Q 006185 84 FLSNLRTLRLDYCNH--LPDLSLIGELSGLEILDLSKSDVN 122 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~ 122 (657)
.+++|++|++++|.. +.....+..+++|++|++.+|.++
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 466777777776661 122345556666666666666555
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=4.1e-12 Score=128.61 Aligned_cols=204 Identities=20% Similarity=0.135 Sum_probs=121.3
Q ss_pred CCCCCCccEEEccCCCcc-----ccCCCC-CCCCCcEEEecCCcCcCCC------chhhcCCCCccEEEecCCcCC-CCC
Q 006185 13 INTFEDLTGISLMFNDIH-----EVPDGL-ECPKLQALFLQKNHLLVIP------DPFFQGMKDLKVLDLGGIRMV-SPP 79 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~------~~~~~~l~~Lr~L~L~~~~~~-~lp 79 (657)
+..+..++.|+++++.++ .+++.. ..+++++++++++.+...+ ...|..+++|++|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345566888888888773 344333 5667888888777654211 123567778888888888775 344
Q ss_pred ccccCCCC---CcEEEccCCCCCCC-----CcccCCC-CCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCCCC
Q 006185 80 SSLSFLSN---LRTLRLDYCNHLPD-----LSLIGEL-SGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNL 145 (657)
Q Consensus 80 ~~~~~l~~---L~~L~l~~~~~~~~-----~~~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~ 145 (657)
..+..+.+ |++|++++|..... ...+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|...
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 44444443 88888888773211 1345566 77888888888776 34445666777888888875433
Q ss_pred CC----CchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC--C---C--CCCC
Q 006185 146 EL----IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP--S---D--MSLP 214 (657)
Q Consensus 146 ~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~---~--~~l~ 214 (657)
.. ++.. +..+++|++|++++|.+.... .......+..+++|+.|++++|.+.... . . ...+
T Consensus 179 ~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 179 DAGIRALAEG-LKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred hHHHHHHHHH-HHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 21 2222 344567888888777543211 1133445566777888888777653210 0 0 1235
Q ss_pred CccEEEEEEc
Q 006185 215 NLTSFSITIG 224 (657)
Q Consensus 215 ~L~~L~l~~~ 224 (657)
.|++|++.++
T Consensus 251 ~L~~L~l~~n 260 (319)
T cd00116 251 SLLTLSLSCN 260 (319)
T ss_pred CceEEEccCC
Confidence 6666666654
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=3.3e-12 Score=129.28 Aligned_cols=175 Identities=21% Similarity=0.096 Sum_probs=101.8
Q ss_pred EEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCc-----CCCchhhcCCCCccEEEecCCcCCC-------CCccccCC
Q 006185 21 GISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLL-----VIPDPFFQGMKDLKVLDLGGIRMVS-------PPSSLSFL 85 (657)
Q Consensus 21 ~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~~~-------lp~~~~~l 85 (657)
.|+|..+.++ .....+ .+.+|+.|+++++.+. .++.. +...+.|++++++++.+.. ++..+.++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3555555554 222222 5566888888888764 23332 4566778888888776542 23456667
Q ss_pred CCCcEEEccCCCCCC-CCcccCCCC---CCCEEEeeCCCCC-----cccccccCC-CCCCEEEccCCCCCCC----Cchh
Q 006185 86 SNLRTLRLDYCNHLP-DLSLIGELS---GLEILDLSKSDVN-----EIPVSFGRL-SHLRLLDLTDCYNLEL----IPPG 151 (657)
Q Consensus 86 ~~L~~L~l~~~~~~~-~~~~~~~l~---~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~c~~~~~----~~~~ 151 (657)
.+|+.|++++|.... .+..+..+. +|++|++++|.++ .+...+..+ ++|+.|++++|..... ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 788888888777332 233333333 3888888877765 233345566 7778888777653321 2222
Q ss_pred HhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 152 VLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 152 ~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
+..+++|++|++++|.+.... .......+...++|+.|++++|.+
T Consensus 161 -~~~~~~L~~L~l~~n~l~~~~-------~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 161 -LRANRDLKELNLANNGIGDAG-------IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred -HHhCCCcCEEECcCCCCchHH-------HHHHHHHHHhCCCCCEEeccCCcc
Confidence 455667777777777543210 112334455556777777776654
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1.1e-12 Score=130.68 Aligned_cols=190 Identities=25% Similarity=0.341 Sum_probs=143.3
Q ss_pred CCCCCCCCCC---CCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185 4 GVELKDWPSI---NTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP 79 (657)
Q Consensus 4 ~~~l~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 79 (657)
+..++++|-- -.+..-...+++.|.+..+|..+ .|-.|+.+.++.|.+..+|..+ .++..|.+|+|+.|++..+|
T Consensus 59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp 137 (722)
T KOG0532|consen 59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLP 137 (722)
T ss_pred cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCC
Confidence 4456666621 12344456788888888888777 6677888888888888888775 78888888888888888888
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L 159 (657)
..++.|. |+.|.+++|+....|..++.+.+|..||.+.|.+..+|..++.+.+|+.|.++. +.+..+|.+ +.. -.|
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~-LpL 213 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCS-LPL 213 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhC-Cce
Confidence 8777664 788888888866778888888888888888888888888888888888888887 566677777 553 347
Q ss_pred cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC
Q 006185 160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD 210 (657)
Q Consensus 160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 210 (657)
..||++.|.+. .++..+.+|++|++|.++.|....-|..
T Consensus 214 i~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 214 IRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred eeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHH
Confidence 88888877665 6777788888888888888776655544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=1.8e-10 Score=102.13 Aligned_cols=116 Identities=26% Similarity=0.310 Sum_probs=27.1
Q ss_pred ccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhc-CCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCC
Q 006185 24 LMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ-GMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDL 102 (657)
Q Consensus 24 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 102 (657)
++.+.|..++...+..++++|++.+|.+..+.. ++ .+.+|++|++++|.++++. .+..+++|++|++++|......
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp --------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 444556666665555667777777777665543 33 4667777777777776654 3556666666666666632222
Q ss_pred ccc-CCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCC
Q 006185 103 SLI-GELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDC 142 (657)
Q Consensus 103 ~~~-~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c 142 (657)
..+ ..+++|++|++++|.|..+-+ .+..+++|++|++.++
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 333 246666666666666553322 2444555555555553
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2.1e-11 Score=121.85 Aligned_cols=161 Identities=23% Similarity=0.362 Sum_probs=128.0
Q ss_pred CCCCCCC-CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185 5 VELKDWP-SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL 82 (657)
Q Consensus 5 ~~l~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~ 82 (657)
+.+.++| ..+.+..|..+.+..|.+-.+|... ++..|.+|+++.|++..+|..++ .--|++|-+++|+++.+|..+
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCccc
Confidence 4555666 4566777788888888888887766 77788888888888888888752 346888888888888888888
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
+.+.+|..||.+.|...+.|..++.+.+|+.|+++.+.+..+|+.+..| .|..||++. +++..+|.. +.+|++||+|
T Consensus 163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l 239 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVL 239 (722)
T ss_pred ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheee
Confidence 8888888888888887778888888888888888888888888888754 588888877 677788887 7888888888
Q ss_pred EcccCccc
Q 006185 163 YMSHSFCH 170 (657)
Q Consensus 163 ~l~~~~~~ 170 (657)
.|.+|.+.
T Consensus 240 ~LenNPLq 247 (722)
T KOG0532|consen 240 QLENNPLQ 247 (722)
T ss_pred eeccCCCC
Confidence 88888664
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1e-09 Score=114.31 Aligned_cols=189 Identities=30% Similarity=0.370 Sum_probs=129.5
Q ss_pred EEEccCCCc-cccCCCCCCCCCcEEEecCCcCcCCCchhhcCCC-CccEEEecCCcCCCCCccccCCCCCcEEEccCCCC
Q 006185 21 GISLMFNDI-HEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMK-DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 21 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 98 (657)
.+.+..+.+ ..+......+.+++|++.++.+.++++.. ..++ +|++|+++++++..+|..+..+++|+.|++++|..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 456666655 34443345567777888777777777753 4453 78888888888777777777788888888888774
Q ss_pred CCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccc
Q 006185 99 LPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEED 178 (657)
Q Consensus 99 ~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~ 178 (657)
...|...+.+..|+.|+++++.+..+|..++....|+++.+.++... ..+.. +.++.++..+.+.++.+.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~-------- 245 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLE-------- 245 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceee--------
Confidence 45555555777788888888888877777777777778877774323 33333 677777777776665432
Q ss_pred cccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185 179 TRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 224 (657)
..+..++.+..++.|+++.+.+..++....+.+++.|++.++
T Consensus 246 ----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 246 ----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ----eccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 224566777778888888888777776666777777777665
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=6.5e-10 Score=115.84 Aligned_cols=181 Identities=30% Similarity=0.360 Sum_probs=152.1
Q ss_pred CCCCCCCccEEEccCCCccccCCCCCCC--CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCc
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGLECP--KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLR 89 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~ 89 (657)
.+...+.++.|++..|.+++++...... +|+.|++++|.+..++.. .+.++.|+.|++++|++.++|...+...+|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 4555678999999999999999888443 899999999999988654 4899999999999999999999888999999
Q ss_pred EEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 90 TLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 90 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
.|+++++.....|..++...+|++|.++++.+...+..+.++.++..+.+.+ +.+..++.. ++.+..++.|++++|.+
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQI 267 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccc
Confidence 9999999966677777888889999999998777888899999999999777 455554444 78999999999999876
Q ss_pred ccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
. .+..++.+.+++.|+++++.....+
T Consensus 268 ~-------------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 268 S-------------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred c-------------ccccccccCccCEEeccCccccccc
Confidence 3 2333889999999999998764443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.3e-10 Score=105.39 Aligned_cols=138 Identities=20% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~ 163 (657)
.-+.|+++|+++|.....-+++.-++.+++|++++|.+..+-. +..+++|++||+++ +.+..+.. .-.++-+.+.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~G-wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVG-WHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhh-hHhhhcCEeeee
Confidence 3456777777777633344566666777777777777665533 66677777777777 34444332 134566777777
Q ss_pred cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC---CCCCCCccEEEEEEcCccChhhHHHHHh
Q 006185 164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS---DMSLPNLTSFSITIGEEDTLNDFIELFL 237 (657)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 237 (657)
+.+|.+ +....++++-+|..|++.+|+++.+.. ..++|.|+.+.+.+++-...+++-..++
T Consensus 359 La~N~i-------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVL 422 (490)
T KOG1259|consen 359 LAQNKI-------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVL 422 (490)
T ss_pred hhhhhH-------------hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHH
Confidence 776654 445556666677777777776644433 3567777777777776555555544333
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.6e-10 Score=106.50 Aligned_cols=124 Identities=30% Similarity=0.428 Sum_probs=62.3
Q ss_pred CCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEc
Q 006185 15 TFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRL 93 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l 93 (657)
.++-|+.+++++|.|+.+.+.. -.|++|.|+++.|.+..+.. +..+.+|..|||++|.+.++...-.++-|..+|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3444555555555555555544 34555555555555554443 34455555555555555444333334445555555
Q ss_pred cCCCCCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccC
Q 006185 94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTD 141 (657)
Q Consensus 94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~ 141 (657)
.+|. ++..+.++++++|.+||+++|+|..+- .+|++++-|+++.+.+
T Consensus 360 a~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 360 AQNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 5554 444555555555555555555554332 2344444444444444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.9e-09 Score=103.56 Aligned_cols=205 Identities=21% Similarity=0.177 Sum_probs=136.8
Q ss_pred CCCCCccEEEccCCCccccCC--CC-CCCCCcEEEecCCcCcC--CCchhhcCCCCccEEEecCCcCCCCCccc--cCCC
Q 006185 14 NTFEDLTGISLMFNDIHEVPD--GL-ECPKLQALFLQKNHLLV--IPDPFFQGMKDLKVLDLGGIRMVSPPSSL--SFLS 86 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~--~~l~ 86 (657)
+.+++||.+.|..+.+...+. .. .|++++.|++++|-+.. .-..+...+++|+.|+++.|.+....++. ..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999998888876663 23 78999999999987662 22345678899999999999775332221 3678
Q ss_pred CCcEEEccCCCCCC-CC-cccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEE
Q 006185 87 NLRTLRLDYCNHLP-DL-SLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEEL 162 (657)
Q Consensus 87 ~L~~L~l~~~~~~~-~~-~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L 162 (657)
+|..|.++.|.... +. .....+++|+.|++.+|. +..-..+..-++.|+.|++++++.+ +++. -.++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 89999999998221 22 334568899999999983 3322233445678899999995444 4441 126788888888
Q ss_pred EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC---CCCCCccEEEEEEc
Q 006185 163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD---MSLPNLTSFSITIG 224 (657)
Q Consensus 163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~L~~L~l~~~ 224 (657)
+++.|.+.. ..+. .-........++.|+.|.+..|++...+.. ..+++|+.|.+..+
T Consensus 277 nls~tgi~s-i~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 277 NLSSTGIAS-IAEP----DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hccccCcch-hcCC----CccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 888875532 1000 001222345678899999998887555554 45577777776544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=4.9e-08 Score=70.96 Aligned_cols=59 Identities=39% Similarity=0.549 Sum_probs=37.3
Q ss_pred CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCC
Q 006185 39 PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 97 (657)
++|++|++++|.+..+++.+|.++++|++|++++|.++.++ ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666666666666666666666554 355666666666666654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=4.1e-08 Score=71.33 Aligned_cols=59 Identities=31% Similarity=0.519 Sum_probs=46.0
Q ss_pred CCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC
Q 006185 17 EDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 75 (657)
++|++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888888877655 678888888888888777777788888888888887764
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-08 Score=98.75 Aligned_cols=180 Identities=23% Similarity=0.235 Sum_probs=130.2
Q ss_pred CCCCCCccEEEccCCCcccc---CCCC-CCCCCcEEEecCCcCcCC-CchhhcCCCCccEEEecCCcCC--CCCccccCC
Q 006185 13 INTFEDLTGISLMFNDIHEV---PDGL-ECPKLQALFLQKNHLLVI-PDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFL 85 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l---~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l 85 (657)
...|+++|.|+|+.|-+... .+.. .+|+|+.|+++.|.+... ....-..+++|+.|.+++|+++ ++-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45689999999999988743 3333 799999999999987621 1111236889999999999985 344455678
Q ss_pred CCCcEEEccCCC-CCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCC--chh----HhhcC
Q 006185 86 SNLRTLRLDYCN-HLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELI--PPG----VLSRL 156 (657)
Q Consensus 86 ~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~--~~~----~~~~l 156 (657)
++|+.|++.+|. ....-.....+..|+.||+++|.+-.++ ..++.++.|+.|+++.|. +.++ |.. .....
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence 899999999995 2222344556788999999999887776 348889999999988853 3332 221 12457
Q ss_pred ccCcEEEcccCccc-cccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 157 RKLEELYMSHSFCH-WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 157 ~~L~~L~l~~~~~~-~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
++|+.|++..|.+. | .....+..+.+|+.|.+..+.+
T Consensus 301 ~kL~~L~i~~N~I~~w-----------~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDW-----------RSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccceeeecccCccccc-----------cccchhhccchhhhhhcccccc
Confidence 89999999888652 3 4456677778888888777665
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=3.3e-07 Score=91.43 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=10.2
Q ss_pred ccCCcEEEEecCCCc
Q 006185 517 LVRLESLEVSSCPTL 531 (657)
Q Consensus 517 l~~L~~L~i~~C~~l 531 (657)
+++|++|.|.+|..+
T Consensus 155 PsSLk~L~Is~c~~i 169 (426)
T PRK15386 155 SPSLKTLSLTGCSNI 169 (426)
T ss_pred CCcccEEEecCCCcc
Confidence 456777777777654
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=1.2e-08 Score=96.72 Aligned_cols=206 Identities=19% Similarity=0.168 Sum_probs=120.4
Q ss_pred CCCCCCccEEEccCCCcc----ccCCC--------CCCCCCcEEEecCCcCc-CCC---chhhcCCCCccEEEecCCcCC
Q 006185 13 INTFEDLTGISLMFNDIH----EVPDG--------LECPKLQALFLQKNHLL-VIP---DPFFQGMKDLKVLDLGGIRMV 76 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~----~l~~~--------~~~~~L~~L~l~~~~~~-~~~---~~~~~~l~~Lr~L~L~~~~~~ 76 (657)
++.-++||..+++.-... .+|+. ..+++|++|++|+|.+. .-+ ...++.+..|+.|.|.+|.+.
T Consensus 54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 344557777777654322 33332 26677888888887766 222 234566777888888887764
Q ss_pred CC--------------CccccCCCCCcEEEccCCCCCCCC-----cccCCCCCCCEEEeeCCCCC-----cccccccCCC
Q 006185 77 SP--------------PSSLSFLSNLRTLRLDYCNHLPDL-----SLIGELSGLEILDLSKSDVN-----EIPVSFGRLS 132 (657)
Q Consensus 77 ~l--------------p~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~ 132 (657)
.. ...+++-..||++...+|.....+ ..+...+.|+.+.+..|.|. .+...+..++
T Consensus 134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~ 213 (382)
T KOG1909|consen 134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP 213 (382)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence 21 223445567888888777733333 34556677888888777655 2334567778
Q ss_pred CCCEEEccCCCCCCCCch---hHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCccEEEeecCCCccCC
Q 006185 133 HLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 133 ~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 208 (657)
+|+.||++++.....-.. ..+..+++|++|++++|.+... | ..+....+. ..+.|+.+.+.+|.+..-.
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~--G-----a~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE--G-----AIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc--c-----HHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 888888887543322111 1245567788888877765432 1 113333333 3467788887777652211
Q ss_pred C------CCCCCCccEEEEEEcC
Q 006185 209 S------DMSLPNLTSFSITIGE 225 (657)
Q Consensus 209 ~------~~~l~~L~~L~l~~~~ 225 (657)
. ....+.|..|++.+|.
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCccc
Confidence 0 0235677777777653
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=4.8e-07 Score=90.34 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=98.0
Q ss_pred HhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccc
Q 006185 373 QSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQV 452 (657)
Q Consensus 373 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~ 452 (657)
..+..++.|+|++| .++.+ | ...++|+.|.+++|.+++.++.. -.++|++|.|.+|.++..+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sL---------P---~LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESL---------P---VLPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCccc---------C---CCCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccccc
Confidence 34678888888887 66655 2 12345888888888888775421 1357888888888766544
Q ss_pred cccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcc
Q 006185 453 FPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQ 532 (657)
Q Consensus 453 ~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 532 (657)
.++|+.|++. +..+..+ ..-+++|++|.+.++....
T Consensus 111 --------------------------------------P~sLe~L~L~-~n~~~~L-----~~LPssLk~L~I~~~n~~~ 146 (426)
T PRK15386 111 --------------------------------------PESVRSLEIK-GSATDSI-----KNVPNGLTSLSINSYNPEN 146 (426)
T ss_pred --------------------------------------ccccceEEeC-CCCCccc-----ccCcchHhheecccccccc
Confidence 1345666664 3333222 1234567788775433111
Q ss_pred eeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcc-eecCCCccccceec
Q 006185 533 EIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMK-TFGYGNQLTPKLLK 611 (657)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~-~lp~~~~~l~~~L~ 611 (657)
.. + ....-.++|+.|.+.+|..+. +| .++. .+|+.|.+..+.... .++... +|.++
T Consensus 147 ~~-----~--------lp~~LPsSLk~L~Is~c~~i~-LP-~~LP-----~SLk~L~ls~n~~~sLeI~~~s--LP~nl- 203 (426)
T PRK15386 147 QA-----R--------IDNLISPSLKTLSLTGCSNII-LP-EKLP-----ESLQSITLHIEQKTTWNISFEG--FPDGL- 203 (426)
T ss_pred cc-----c--------cccccCCcccEEEecCCCccc-Cc-cccc-----ccCcEEEecccccccccCcccc--ccccc-
Confidence 10 0 000124689999999998653 55 4443 799999997753221 133222 56777
Q ss_pred eeEeccceeec
Q 006185 612 GVEFGYCKYCW 622 (657)
Q Consensus 612 ~L~i~~C~~l~ 622 (657)
.|.+.+|-++.
T Consensus 204 ~L~f~n~lkL~ 214 (426)
T PRK15386 204 DIDLQNSVLLS 214 (426)
T ss_pred EechhhhcccC
Confidence 88888886543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=2e-08 Score=104.75 Aligned_cols=188 Identities=27% Similarity=0.287 Sum_probs=93.0
Q ss_pred CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185 16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD 94 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~ 94 (657)
+..+..+++..|.+..+.... .+++|+.|++.+|.+..+... +..+.+|++|++++|.|+++. .+..+..|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheec
Confidence 344444455555555433322 556666666666665544442 245666666666666665442 23445556666666
Q ss_pred CCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185 95 YCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 95 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
+|. ++....+..++.|+.++++++.+..+... ...+.+++.+.+.+ +.+..+.. +..+..+..+++..+.+.
T Consensus 149 ~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~--- 221 (414)
T KOG0531|consen 149 GNL-ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKIS--- 221 (414)
T ss_pred cCc-chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccce---
Confidence 665 55555555566666666666665544432 34555555555555 22322221 233333333343333321
Q ss_pred ccccccccccchhhhcCCCC--ccEEEeecCCCccC-CCCCCCCCccEEEEE
Q 006185 174 ESEEDTRSNAKFIELGALSR--LTSLHIDIPKGEIM-PSDMSLPNLTSFSIT 222 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~ 222 (657)
....+..... |+.+++.++.+..+ .....+..+..+++.
T Consensus 222 ----------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 222 ----------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred ----------eccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 1122222222 66666666666555 233444455555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=5.5e-09 Score=96.52 Aligned_cols=172 Identities=23% Similarity=0.207 Sum_probs=99.0
Q ss_pred CCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEEEccCCCCCCCC---cccCCCCCCCEE
Q 006185 40 KLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTLRLDYCNHLPDL---SLIGELSGLEIL 114 (657)
Q Consensus 40 ~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L 114 (657)
.|++||+++..++ .--..+++.+++|+.|++.|+++. .+-..+.+-.+|+.|+++.|+.++.- -.+.++..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777776666 223344566777777777777664 34455666667777777777644432 335567777777
Q ss_pred EeeCCCCC-----cccccccCCCCCCEEEccCCCCCC---CCchhHhhcCccCcEEEcccCccccccccccccccccchh
Q 006185 115 DLSKSDVN-----EIPVSFGRLSHLRLLDLTDCYNLE---LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFI 186 (657)
Q Consensus 115 ~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~ 186 (657)
++++|.+. .+-..|+ .+|..|+++||...- .+.. ...++++|.+||+++|.... .....
T Consensus 266 NlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~----------~~~~~ 332 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLK----------NDCFQ 332 (419)
T ss_pred CchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccC----------chHHH
Confidence 77777543 1112222 356667777653211 1111 13567777777777664321 13445
Q ss_pred hhcCCCCccEEEeecCCC---ccCCCCCCCCCccEEEEEEc
Q 006185 187 ELGALSRLTSLHIDIPKG---EIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 187 ~l~~l~~L~~L~l~~~~~---~~~~~~~~l~~L~~L~l~~~ 224 (657)
++-+++.|++|+++.|.. +.+-.....+.|..|++.++
T Consensus 333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 566777777777776653 11112245677888887765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.6e-08 Score=93.53 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185 111 LEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167 (657)
Q Consensus 111 L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (657)
||+||++...|+ .+...+..+.+|+.|.+.|...-..+... +.+-.+|+.|++++|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMC 244 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccc
Confidence 555555555444 33333444445555554442211122222 344444555554444
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=1.2e-06 Score=95.81 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=84.7
Q ss_pred CccEEEecCCcCC-CCCccccCCCCCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEcc
Q 006185 64 DLKVLDLGGIRMV-SPPSSLSFLSNLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLT 140 (657)
Q Consensus 64 ~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~ 140 (657)
.++.|+|+++.+. .+|..++++++|++|++++|... ..|..++.+++|++|++++|.++ .+|+.++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778889888885 68888889999999999988844 45678889999999999999887 788889999999999999
Q ss_pred CCCCCCCCchhHhhc-CccCcEEEcccCc
Q 006185 141 DCYNLELIPPGVLSR-LRKLEELYMSHSF 168 (657)
Q Consensus 141 ~c~~~~~~~~~~~~~-l~~L~~L~l~~~~ 168 (657)
+|...+.+|.. ++. ..++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 97777788877 444 4567788887774
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=1.1e-06 Score=96.04 Aligned_cols=106 Identities=25% Similarity=0.233 Sum_probs=88.3
Q ss_pred CCcEEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 87 NLRTLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 87 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
.++.|+|+++... ..|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999843 36788999999999999999997 88999999999999999997776788877 899999999999
Q ss_pred ccCccccccccccccccccchhhhcCC-CCccEEEeecCCC
Q 006185 165 SHSFCHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKG 204 (657)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 204 (657)
++|.+.. ..+..++.. .++..+++.+|..
T Consensus 498 s~N~l~g-----------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSG-----------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccc-----------cCChHHhhccccCceEEecCCcc
Confidence 9986542 566666653 4677888888764
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=4.4e-08 Score=102.22 Aligned_cols=177 Identities=27% Similarity=0.337 Sum_probs=123.7
Q ss_pred CCCCCCCccEEEccCCCccccCC-CCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185 12 SINTFEDLTGISLMFNDIHEVPD-GLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT 90 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~ 90 (657)
.+..++++..|++..|.+..+.. ...+++|++|++++|.+.++.. +..++.|+.|++++|.+..+.. +..++.|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 36778999999999999998888 4589999999999999998877 6788889999999998876543 455889999
Q ss_pred EEccCCCCCCCCcc--cCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCc--cCcEEEccc
Q 006185 91 LRLDYCNHLPDLSL--IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR--KLEELYMSH 166 (657)
Q Consensus 91 L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~--~L~~L~l~~ 166 (657)
+++++|. +..... ...+.+++.+.+.++.+..+. .+..+..+..+++.. +.+..+.. +..+. +|+++++.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhccc
Confidence 9999998 444444 688899999999998877542 333444444445555 22322221 22233 377788777
Q ss_pred CccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
+.+.. ....+..+.++..|++..+.+..+.
T Consensus 242 n~i~~------------~~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 242 NRISR------------SPEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred Ccccc------------ccccccccccccccchhhccccccc
Confidence 75531 1144666667777777666554333
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=5e-09 Score=108.02 Aligned_cols=176 Identities=23% Similarity=0.210 Sum_probs=123.6
Q ss_pred CCCCCCCccEEEccCCCccccCCCCC-CCCCcEEEecCCc----------CcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGLE-CPKLQALFLQKNH----------LLVIPDPFFQGMKDLKVLDLGGIRMVSPPS 80 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~----------~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 80 (657)
.+..++.||+|-+.++.++.+..... -..|+.|...+.- ..++..+. ....|.+.+.++|.+..+..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHH
Confidence 46778899999999988875433221 1234444432211 11222211 23467788888888888888
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L 159 (657)
++.-++.|+.|+|++|+ .+....+..|++|++||+++|.++.+|.- ...++ |+.|.+++ +.++.+-. +.++++|
T Consensus 182 SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g--ie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG--IENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh--HHhhhhh
Confidence 88888999999999998 66666888999999999999998888763 44554 89999998 56666654 7899999
Q ss_pred cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
+.||+++|-+.. -....-+..+..|+.|++.+|.+
T Consensus 257 ~~LDlsyNll~~----------hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 257 YGLDLSYNLLSE----------HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hccchhHhhhhc----------chhhhHHHHHHHHHHHhhcCCcc
Confidence 999998885431 12334466677888888888765
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=1.5e-07 Score=89.44 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=9.3
Q ss_pred hhhhcCCCCccEEEeecCC
Q 006185 185 FIELGALSRLTSLHIDIPK 203 (657)
Q Consensus 185 ~~~l~~l~~L~~L~l~~~~ 203 (657)
...+..+++|+.|++..|.
T Consensus 206 ~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 206 AEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHhCCcceeeecccch
Confidence 3444455555555555444
No 50
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.23 E-value=1e-07 Score=102.56 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=21.4
Q ss_pred cCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcce
Q 006185 557 LFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKT 598 (657)
Q Consensus 557 L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~ 598 (657)
++.|.+..|...+.-. .... ...+..++.+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~-l~~~-~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKG-LRCL-ADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccc-hHHH-hhhhhccccCCccCcccccc
Confidence 6666666666555433 2211 11146666666666666654
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.17 E-value=5.3e-07 Score=98.09 Aligned_cols=132 Identities=22% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCCCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCC--CCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCC
Q 006185 37 ECPKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMV--SPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE 112 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 112 (657)
.-.+|++|+++|.... ..+..+...++.||.|.+++-.+. ++.....++++|+.||+++++ ++....+++|++||
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence 3467888888886544 556666677888888888887653 344556678888888888888 77778888888888
Q ss_pred EEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCchh---H---hhcCccCcEEEcccCccc
Q 006185 113 ILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPPG---V---LSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 113 ~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~~---~---~~~l~~L~~L~l~~~~~~ 170 (657)
+|.+.+-.+..-. ..+-+|++|++||++.-... ..+.- . -..+++|+.||.+++.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8888887776433 34677888888888873322 22211 0 124788899998877544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=8.9e-07 Score=96.35 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=92.1
Q ss_pred CCCccEEEecCCcC-C-CCCcccc-CCCCCcEEEccCCCCCCC--CcccCCCCCCCEEEeeCCCCCcccccccCCCCCCE
Q 006185 62 MKDLKVLDLGGIRM-V-SPPSSLS-FLSNLRTLRLDYCNHLPD--LSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRL 136 (657)
Q Consensus 62 l~~Lr~L~L~~~~~-~-~lp~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 136 (657)
-.+|++|+++|... . .=|..++ .+++|+.|.+.+-....+ -....++++|+.||+++++++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 46899999998643 2 2334454 588999999998663222 24556889999999999999988 68999999999
Q ss_pred EEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 137 LDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 137 L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
|.+++-.......-..+.+|++|++||++......... ....-.+--..+++||.|+.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----HHHHHHHhcccCccccEEecCCcch
Confidence 98888433322222237789999999998764321110 0001122223578999999998765
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.12 E-value=1.7e-07 Score=100.94 Aligned_cols=246 Identities=20% Similarity=0.247 Sum_probs=121.6
Q ss_pred cccccEEeccccccccccccccCCCCCCCCccEEEEecC-CCccccc--chhHHHhcccCcEEEEcccccceeeeecccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGC-GSMLKIL--PSHLVQSFQNLQRLMVESCELLVSVFEIERV 398 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~--p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 398 (657)
++.|+.|.+.+|..+.+.... .....++.|+.|++++| ....... .......+++|+.|++..|..+++.. +.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~-l~-- 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD-ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG-LS-- 262 (482)
T ss_pred CchhhHhhhcccccCChhhHH-HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh-HH--
Confidence 577777777777655432100 11225677777777763 2222211 12233456677777777766544331 00
Q ss_pred cccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185 399 NIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI 478 (657)
Q Consensus 399 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~ 478 (657)
.-...+++|+.|.+.+|+.+++- ........+++|++|++++|..+++.. +..+ .
T Consensus 263 ----~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~---------l~~~-~---------- 317 (482)
T KOG1947|consen 263 ----ALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSG---------LEAL-L---------- 317 (482)
T ss_pred ----HHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHH---------HHHH-H----------
Confidence 00123667777777777665441 111122346667777777776664321 1111 0
Q ss_pred cccccCCCCCCCCCCccEEE---EecCCCcceecccchhhcc-cCCcEEEEecCCCcceeeeCcCceecccCCCcceEec
Q 006185 479 HATTSTSSPTPSLGNLVSIT---IRGCGKLRNLFTTSMVKSL-VRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITF 554 (657)
Q Consensus 479 ~~~~~~~~~~~~~~~L~~L~---i~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~ 554 (657)
..+++|+.+. +.+|+.+++.......... ..+..+.+.+|++++.+....- ..
T Consensus 318 ----------~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~-------------~~ 374 (482)
T KOG1947|consen 318 ----------KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC-------------GI 374 (482)
T ss_pred ----------HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh-------------hc
Confidence 0223333322 2334556554322222222 2677777777777765521100 01
Q ss_pred cccC-eeEcCcCCCcc-ccccCCCcceeeccccceeeeccCCCcceecCCCccc-cceeceeEeccceeecc
Q 006185 555 PSLF-SIKLCDLGSLT-CFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLT-PKLLKGVEFGYCKYCWT 623 (657)
Q Consensus 555 ~~L~-~L~l~~c~~l~-~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l-~~~L~~L~i~~C~~l~~ 623 (657)
.... .+.+.+|+.++ .+. .. ...+.+++.|.+..|...+.--.....- ...+..+.+.+|+..+.
T Consensus 375 ~~~~~~~~l~gc~~l~~~l~---~~-~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 375 SDLGLELSLRGCPNLTESLE---LR-LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cCcchHHHhcCCcccchHHH---HH-hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 1222 56777777773 332 11 1123448888888888777532111100 24467777888876653
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7e-06 Score=54.36 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=13.7
Q ss_pred CccEEEecCCcCCCCCccccCCCCCcEEEccCCC
Q 006185 64 DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 64 ~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~ 97 (657)
+|++|++++|+++++|..+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444444444444444434444444444444443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=4.2e-07 Score=74.41 Aligned_cols=88 Identities=23% Similarity=0.318 Sum_probs=44.0
Q ss_pred CCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEee
Q 006185 38 CPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLS 117 (657)
Q Consensus 38 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 117 (657)
..+|...++++|.+.++|+.+-.+++.+..|++++|.+.++|..+..++.||.|+++.|.....|..+..|.+|-+|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34445555555555555555444444555555555555555555555555555555555544444444444444444444
Q ss_pred CCCCCccc
Q 006185 118 KSDVNEIP 125 (657)
Q Consensus 118 ~~~i~~lp 125 (657)
++.+..+|
T Consensus 132 ~na~~eid 139 (177)
T KOG4579|consen 132 ENARAEID 139 (177)
T ss_pred CCccccCc
Confidence 44444333
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=2.4e-05 Score=51.80 Aligned_cols=39 Identities=31% Similarity=0.547 Sum_probs=23.0
Q ss_pred CCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCc
Q 006185 110 GLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149 (657)
Q Consensus 110 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~ 149 (657)
+|++|++++|.|+.+|..+++|++|++|++++| .+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 566666666666666666666666666666663 344443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=3e-05 Score=68.35 Aligned_cols=123 Identities=25% Similarity=0.259 Sum_probs=87.0
Q ss_pred CccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc-CCCCCcEEEccC
Q 006185 18 DLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS-FLSNLRTLRLDY 95 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~-~l~~L~~L~l~~ 95 (657)
.=+.+++.+..+..+...- -..+...+++++|.+..++. |..++.|.+|.+.+|+|+.+...+. .+++|..|.+.+
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3455666666554443322 44567788888888777766 7788888888888888887766665 356688888888
Q ss_pred CCC--CCCCcccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEccCC
Q 006185 96 CNH--LPDLSLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDLTDC 142 (657)
Q Consensus 96 ~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~c 142 (657)
|+. +.+...+..++.|++|.+-++.++.-+. .+.++++|++||..+.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 872 3345667778888888888887774432 3778889999988773
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=3.2e-05 Score=68.15 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=61.3
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC--ccccCCCCCcEEEccC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP--SSLSFLSNLRTLRLDY 95 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp--~~~~~l~~L~~L~l~~ 95 (657)
+.-.++++.|++..++....++.|.+|.+.+|.++.+.+.+-..+++|..|.+.+|++.++. ..+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 44456666666665555446666666666666666666555455566666666666665442 2345666666666666
Q ss_pred CCCCCCC----cccCCCCCCCEEEeeCC
Q 006185 96 CNHLPDL----SLIGELSGLEILDLSKS 119 (657)
Q Consensus 96 ~~~~~~~----~~~~~l~~L~~L~l~~~ 119 (657)
|...... ..+.++++|++||..+.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 6633222 45666666666666654
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=2.1e-07 Score=96.32 Aligned_cols=123 Identities=27% Similarity=0.276 Sum_probs=80.8
Q ss_pred CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEc
Q 006185 16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRL 93 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l 93 (657)
+.+|.+.+.++|.+..+...+ -++.|+.|++++|++.+... +..+.+|++|||++|++..+|.. ...|+ |+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~--Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN--LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH--HHhcccccccccccchhccccccchhhhh-heeeee
Confidence 455666677777766666555 56677777777777775552 57777777777777777766653 23344 777777
Q ss_pred cCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCC
Q 006185 94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDC 142 (657)
Q Consensus 94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c 142 (657)
++|. ++....+.+|++|+.||+++|-+....+ -++.|..|+.|.+.|+
T Consensus 240 rnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 240 RNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred cccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 7777 6666667777777777777775553221 2455566667777664
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.81 E-value=1.2e-05 Score=73.83 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=41.6
Q ss_pred CCCCccEEEecCCcCC-----CCCccccCCCCCcEEEccCCCCC--CC---------CcccCCCCCCCEEEeeCCCCC-c
Q 006185 61 GMKDLKVLDLGGIRMV-----SPPSSLSFLSNLRTLRLDYCNHL--PD---------LSLIGELSGLEILDLSKSDVN-E 123 (657)
Q Consensus 61 ~l~~Lr~L~L~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~--~~---------~~~~~~l~~L~~L~l~~~~i~-~ 123 (657)
.+..+..++||||.|. .+...|.+-.+|+..+++.-... .+ ...+-++++|+..+++.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3555666666666553 13334445555666655543311 00 133456666666666666544 3
Q ss_pred cccc----ccCCCCCCEEEccC
Q 006185 124 IPVS----FGRLSHLRLLDLTD 141 (657)
Q Consensus 124 lp~~----i~~l~~L~~L~l~~ 141 (657)
.|+. |++-+.|.||.+++
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred cchHHHHHHhcCCCceeEEeec
Confidence 3332 44555666666665
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.58 E-value=6.8e-06 Score=67.46 Aligned_cols=89 Identities=22% Similarity=0.244 Sum_probs=80.7
Q ss_pred CCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT 90 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~ 90 (657)
+.+...|+..++++|.+.++|+.+ +++.+++|++++|.+.++|.+ |..++.||.|+++.|.+...|..|..+.+|-+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 456678888999999999999887 778999999999999999999 69999999999999999999999999999999
Q ss_pred EEccCCCCCCCC
Q 006185 91 LRLDYCNHLPDL 102 (657)
Q Consensus 91 L~l~~~~~~~~~ 102 (657)
|+..++...+.+
T Consensus 128 Lds~~na~~eid 139 (177)
T KOG4579|consen 128 LDSPENARAEID 139 (177)
T ss_pred hcCCCCccccCc
Confidence 999999855555
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4.4e-05 Score=71.26 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=34.7
Q ss_pred HHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEecccccc
Q 006185 263 IKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN 335 (657)
Q Consensus 263 ~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (657)
+...|+++..+.+..|+- .+....-+.+.+|.+--|++..+ ++.+ +........|++|..|.+.+.+-
T Consensus 194 l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~-~ids---wasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPSLSCLNLGAN-NIDS---WASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHhhcccchheeeecCcc-cchhhcccCCCCCcchhhhhccc-cccc---HHHHHHHcCCchhheeeccCCcc
Confidence 344567777777766632 11111112234566656666555 2222 11112445677777777776663
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00013 Score=68.22 Aligned_cols=181 Identities=17% Similarity=0.076 Sum_probs=98.3
Q ss_pred CCCCCccEEEccCCCcccc---CCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC--CCCCccccCCCC
Q 006185 14 NTFEDLTGISLMFNDIHEV---PDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM--VSPPSSLSFLSN 87 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l---~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~--~~lp~~~~~l~~ 87 (657)
..++.++.++|..|.|++- .... ++|.|++|+++.|.+.....+.=.-.++|++|-|.|+.+ +..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3467888889999988743 3333 788999999998886622221102567889999988865 455566677777
Q ss_pred CcEEEccCCCCC---CCCcccCCC-CCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCc
Q 006185 88 LRTLRLDYCNHL---PDLSLIGEL-SGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE 160 (657)
Q Consensus 88 L~~L~l~~~~~~---~~~~~~~~l-~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~ 160 (657)
++.|.++.|+.- -+-..+... +.+++|+..+|... ..-.--...+++..+-+..|..-+.-...-...++.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 777777777411 111111111 24455555555322 11011112345555555544211111111023344444
Q ss_pred EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 161 ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 161 ~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
.|+++.+.+.. -+.+.++.+++.|+-|.+..+.+
T Consensus 228 ~LnL~~~~ids----------wasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 228 CLNLGANNIDS----------WASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhhccccccc----------HHHHHHHcCCchhheeeccCCcc
Confidence 55555544321 15566677777777777766554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.17 E-value=0.0015 Score=55.87 Aligned_cols=117 Identities=17% Similarity=0.294 Sum_probs=44.7
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEE
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILD 115 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 115 (657)
++++|+.+.+.. .+..++...|.++++|+.+.+..+ +..++ ..|.++.+|+.+.+.++...-....+..+.+|+.++
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccc
Confidence 455666666553 344555555666666666666553 44433 244555556666665422111124455566666666
Q ss_pred eeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185 116 LSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159 (657)
Q Consensus 116 l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L 159 (657)
+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6443 4444332 4454 666665543 3344444445555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00048 Score=63.71 Aligned_cols=83 Identities=27% Similarity=0.301 Sum_probs=38.1
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc--CC-CCCccccCCCCCcEEEccCCCCCCCC---cccCCCCC
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR--MV-SPPSSLSFLSNLRTLRLDYCNHLPDL---SLIGELSG 110 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~-~lp~~~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~ 110 (657)
.+..|+.|++.+..++++.. |-.+++|++|.++.|+ +. .++-...++++|++|++++|+ +.++ ..+.++.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcc
Confidence 44455555555555444333 3445555555555552 21 233333344555555555555 2222 22333444
Q ss_pred CCEEEeeCCCCC
Q 006185 111 LEILDLSKSDVN 122 (657)
Q Consensus 111 L~~L~l~~~~i~ 122 (657)
|..|++..|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 444444444433
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.70 E-value=0.0055 Score=52.26 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=67.7
Q ss_pred CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL 88 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L 88 (657)
++..+++|+.+.+.. .+..+++.. .+++|+.+.+.++ +..++...|.+++.|+.+.+.. .+..++ ..|..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 367788999999874 678887776 7889999999885 7788888899999999999976 454444 467789999
Q ss_pred cEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCC
Q 006185 89 RTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHL 134 (657)
Q Consensus 89 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L 134 (657)
+.+.+..+-..-....+.+. +|+.+.+.. .+..++.. +.++++|
T Consensus 84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSNITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT-BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCccccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99999764211224667787 999998876 55555443 6666555
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.001 Score=61.58 Aligned_cols=105 Identities=26% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCC--cCc-CCCchhhcCCCCccEEEecCCcCCCC--CccccCCCCC
Q 006185 14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKN--HLL-VIPDPFFQGMKDLKVLDLGGIRMVSP--PSSLSFLSNL 88 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l--p~~~~~l~~L 88 (657)
..+..+..+++.+..++.+.....+++|+.|.++.| +.. .++.-+ .++++|++|++++|++.-+ -..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcch
Confidence 445677777777777777766668899999999999 444 455443 5679999999999988642 2345678889
Q ss_pred cEEEccCCCCCC--CC--cccCCCCCCCEEEeeCC
Q 006185 89 RTLRLDYCNHLP--DL--SLIGELSGLEILDLSKS 119 (657)
Q Consensus 89 ~~L~l~~~~~~~--~~--~~~~~l~~L~~L~l~~~ 119 (657)
..|++.+|.... +. ..+.-+++|.+||-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 999999998333 22 33444556666554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=6.8e-05 Score=69.36 Aligned_cols=80 Identities=25% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc--cccCCCCCcEEEc
Q 006185 16 FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS--SLSFLSNLRTLRL 93 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~--~~~~l~~L~~L~l 93 (657)
+.+++.|++-++++++|.-..+|+.|++|.++-|.++++.. |..+++|+.|.|..|.|.++-+ .+.++++||+|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45667777777777766644477777777777777777666 6777777777777777765543 4567777777777
Q ss_pred cCCC
Q 006185 94 DYCN 97 (657)
Q Consensus 94 ~~~~ 97 (657)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 7665
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0002 Score=66.37 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=51.1
Q ss_pred CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEEE
Q 006185 85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEELY 163 (657)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L~ 163 (657)
+.+.+.|+..||. +.+++...+++.|++|.|+-|+|+++. .+.++++|++|+++. +.+.++.. ..+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 4455666777776 677777777777777777777777663 466777777777776 33444322 1244566666666
Q ss_pred cccCc
Q 006185 164 MSHSF 168 (657)
Q Consensus 164 l~~~~ 168 (657)
+..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 65554
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.34 E-value=0.003 Score=58.58 Aligned_cols=185 Identities=17% Similarity=0.138 Sum_probs=122.5
Q ss_pred CCCCCCccEEEccCCCcc----ccC--------CCCCCCCCcEEEecCCcCc-CCCc---hhhcCCCCccEEEecCCcCC
Q 006185 13 INTFEDLTGISLMFNDIH----EVP--------DGLECPKLQALFLQKNHLL-VIPD---PFFQGMKDLKVLDLGGIRMV 76 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~----~l~--------~~~~~~~L~~L~l~~~~~~-~~~~---~~~~~l~~Lr~L~L~~~~~~ 76 (657)
++.-++|+..+++.-... .++ ...+|++|+..++++|.+. ..|+ .+++....|.+|.+++|.+.
T Consensus 54 ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 54 IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 455678888888775533 222 2348999999999999887 4443 44688899999999999875
Q ss_pred CC-----C---------ccccCCCCCcEEEccCCCCCCCCc-----ccCCCCCCCEEEeeCCCCCc------ccccccCC
Q 006185 77 SP-----P---------SSLSFLSNLRTLRLDYCNHLPDLS-----LIGELSGLEILDLSKSDVNE------IPVSFGRL 131 (657)
Q Consensus 77 ~l-----p---------~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~i~~------lp~~i~~l 131 (657)
.+ . ....+-+.|++.+...|.....+. .+..=.+|+++.+..|.|.. +...+..+
T Consensus 134 p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~ 213 (388)
T COG5238 134 PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS 213 (388)
T ss_pred ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh
Confidence 32 1 123355789999999888444442 22233689999999998871 12235678
Q ss_pred CCCCEEEccCCCCCCCCc---hhHhhcCccCcEEEcccCccccccccccccccccchhhhc--CCCCccEEEeecCCC
Q 006185 132 SHLRLLDLTDCYNLELIP---PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG--ALSRLTSLHIDIPKG 204 (657)
Q Consensus 132 ~~L~~L~l~~c~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~ 204 (657)
++|+.||+.++.....-. ..++...+.|++|.+..|-... .|+ .+....+. ..++|..|...+|..
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~--~G~-----~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN--EGV-----KSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc--ccH-----HHHHHHhhhhcCCCccccccchhhh
Confidence 999999999964332211 1124556779999999986643 231 12333332 346788888887764
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00025 Score=62.71 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=47.0
Q ss_pred CCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCC
Q 006185 488 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGS 567 (657)
Q Consensus 488 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 567 (657)
+..+++++.|.+.+|..+.+-....+.+-.++|+.|+|++|+.|++. |+.+ +..+++|+.|.|.+++.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~-------L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLAC-------LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHH-------HHHhhhhHHHHhcCchh
Confidence 34667778888888888777554444456677888888888777743 4422 22477777777777665
Q ss_pred ccc
Q 006185 568 LTC 570 (657)
Q Consensus 568 l~~ 570 (657)
...
T Consensus 189 v~~ 191 (221)
T KOG3864|consen 189 VAN 191 (221)
T ss_pred hhc
Confidence 544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.003 Score=34.59 Aligned_cols=21 Identities=48% Similarity=0.749 Sum_probs=14.5
Q ss_pred CCCEEEeeCCCCCcccccccC
Q 006185 110 GLEILDLSKSDVNEIPVSFGR 130 (657)
Q Consensus 110 ~L~~L~l~~~~i~~lp~~i~~ 130 (657)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.0018 Score=57.44 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=45.6
Q ss_pred cccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccc
Q 006185 320 VTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELL 389 (657)
Q Consensus 320 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l 389 (657)
..++.++.|.+.+|..+.+|+...+.. ..++|+.|+|++|+.+++-.-. ....+++|+.|.+.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence 346777777788888777776655544 5678888888888888774333 3356677777777665443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0033 Score=34.42 Aligned_cols=21 Identities=48% Similarity=0.619 Sum_probs=12.5
Q ss_pred CccEEEecCCcCCCCCccccC
Q 006185 64 DLKVLDLGGIRMVSPPSSLSF 84 (657)
Q Consensus 64 ~Lr~L~L~~~~~~~lp~~~~~ 84 (657)
+|++|++++|+++++|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.34 E-value=0.03 Score=28.31 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=7.2
Q ss_pred CCCEEEeeCCCCCccc
Q 006185 110 GLEILDLSKSDVNEIP 125 (657)
Q Consensus 110 ~L~~L~l~~~~i~~lp 125 (657)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.10 E-value=0.032 Score=28.20 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=6.1
Q ss_pred CccEEEecCCcCCCC
Q 006185 64 DLKVLDLGGIRMVSP 78 (657)
Q Consensus 64 ~Lr~L~L~~~~~~~l 78 (657)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.21 E-value=0.0029 Score=57.32 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=73.2
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL 116 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 116 (657)
.++..+.||++.|....+... |+.+..|..|+++.+++..+|..++.+..++.+++..|.....|.++++.+++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 678888999998887766665 5788889999999999999999999999999999988886778999999999999999
Q ss_pred eCCCCC
Q 006185 117 SKSDVN 122 (657)
Q Consensus 117 ~~~~i~ 122 (657)
.++.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988755
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.86 E-value=0.0023 Score=57.98 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=47.6
Q ss_pred cCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEc
Q 006185 60 QGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDL 139 (657)
Q Consensus 60 ~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 139 (657)
...+...+||++.++.-.+-..|+-+..|.-|+++.+..-..|..++.+..++.+++..|+.+..|.++++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 44555556666666555555555555555566666555334555556666666666666666666666666666666655
Q ss_pred cC
Q 006185 140 TD 141 (657)
Q Consensus 140 ~~ 141 (657)
.+
T Consensus 119 k~ 120 (326)
T KOG0473|consen 119 KK 120 (326)
T ss_pred cc
Confidence 55
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.67 E-value=0.23 Score=28.36 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=11.1
Q ss_pred CCCcEEEecCCcCcCCCchhh
Q 006185 39 PKLQALFLQKNHLLVIPDPFF 59 (657)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~ 59 (657)
++|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.67 E-value=0.23 Score=28.36 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=11.1
Q ss_pred CCCcEEEecCCcCcCCCchhh
Q 006185 39 PKLQALFLQKNHLLVIPDPFF 59 (657)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~ 59 (657)
++|++|++++|.+..+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.14 E-value=0.21 Score=28.58 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=9.7
Q ss_pred cccceeeeccCCCcce
Q 006185 583 LALEALQIIDCPGMKT 598 (657)
Q Consensus 583 ~sL~~L~i~~C~~l~~ 598 (657)
++|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5566666666666554
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.71 E-value=0.35 Score=27.53 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=12.6
Q ss_pred CCCCCEEEeeCCCCCccccc
Q 006185 108 LSGLEILDLSKSDVNEIPVS 127 (657)
Q Consensus 108 l~~L~~L~l~~~~i~~lp~~ 127 (657)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.71 E-value=0.35 Score=27.53 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=12.6
Q ss_pred CCCCCEEEeeCCCCCccccc
Q 006185 108 LSGLEILDLSKSDVNEIPVS 127 (657)
Q Consensus 108 l~~L~~L~l~~~~i~~lp~~ 127 (657)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.40 E-value=0.32 Score=27.77 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=14.2
Q ss_pred cCCccEEEeccCcccccc
Q 006185 435 LHNLKKVRVEECDELRQV 452 (657)
Q Consensus 435 ~~~L~~L~i~~C~~L~~~ 452 (657)
+++|++|++++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 467888888888888774
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=82.31 E-value=0.012 Score=61.65 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=6.8
Q ss_pred CCccEEEeecCCC
Q 006185 192 SRLTSLHIDIPKG 204 (657)
Q Consensus 192 ~~L~~L~l~~~~~ 204 (657)
..++++++..|++
T Consensus 262 ~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 262 ETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhhhhcCCc
Confidence 4445555555554
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=72.38 E-value=0.061 Score=56.57 Aligned_cols=179 Identities=23% Similarity=0.151 Sum_probs=117.3
Q ss_pred CccEEEccCCCcccc-----CCCC-CCCCCcEEEecCCcCcCCCc----hhhcCC-CCccEEEecCCcCC-----CCCcc
Q 006185 18 DLTGISLMFNDIHEV-----PDGL-ECPKLQALFLQKNHLLVIPD----PFFQGM-KDLKVLDLGGIRMV-----SPPSS 81 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~l-~~Lr~L~L~~~~~~-----~lp~~ 81 (657)
.+.++.+..|.++.- .... ....|..|++++|.+..... ..+... ..+++|++..|.++ .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 378888888887632 2222 67788889999998772111 112332 56788888888774 25667
Q ss_pred ccCCCCCcEEEccCCCCCCC-----Cccc----CCCCCCCEEEeeCCCCCc-----ccccccCCCC-CCEEEccCCCCCC
Q 006185 82 LSFLSNLRTLRLDYCNHLPD-----LSLI----GELSGLEILDLSKSDVNE-----IPVSFGRLSH-LRLLDLTDCYNLE 146 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~-----~~~~----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~-L~~L~l~~c~~~~ 146 (657)
+....+++.++++.|..... +..+ ....++++|++.+|.++. +-..+..... ++.|++..+. +.
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~ 246 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LG 246 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cc
Confidence 77788999999999884332 2333 357889999999998772 2223445555 6678888743 33
Q ss_pred CC-----chhHhhcC-ccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc
Q 006185 147 LI-----PPGVLSRL-RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE 205 (657)
Q Consensus 147 ~~-----~~~~~~~l-~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (657)
+. .+. +..+ ..+++++++.|.+..... ......+..+++++.+.+..+...
T Consensus 247 d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~-------~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV-------RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHH-hcccchhhhhhhhhcCCccccch-------HHHHHHHhhhHHHHHhhcccCccc
Confidence 22 111 3344 577999999987754222 245566777889999999988763
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.97 E-value=2.5 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.8
Q ss_pred CCCEEEeeCCCCCcccc
Q 006185 110 GLEILDLSKSDVNEIPV 126 (657)
Q Consensus 110 ~L~~L~l~~~~i~~lp~ 126 (657)
+|++|++++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777787777777775
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.74 E-value=9.5 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=8.9
Q ss_pred CCccEEEccCCCccccC
Q 006185 17 EDLTGISLMFNDIHEVP 33 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~ 33 (657)
++|+.|+++.|.|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 44555555555554443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.00 E-value=7.2 Score=21.47 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=5.6
Q ss_pred CCCcEEEecCCcC
Q 006185 39 PKLQALFLQKNHL 51 (657)
Q Consensus 39 ~~L~~L~l~~~~~ 51 (657)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4455555555543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.57 E-value=15 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=7.3
Q ss_pred CCccEEEecCCcC
Q 006185 63 KDLKVLDLGGIRM 75 (657)
Q Consensus 63 ~~Lr~L~L~~~~~ 75 (657)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3455666665555
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.69 E-value=59 Score=34.52 Aligned_cols=63 Identities=27% Similarity=0.233 Sum_probs=41.5
Q ss_pred CCCCCcEEEecCCcCcCCCc--hhhcCCCCccEEEecCC--cCCCCCcccc--CCCCCcEEEccCCCCCC
Q 006185 37 ECPKLQALFLQKNHLLVIPD--PFFQGMKDLKVLDLGGI--RMVSPPSSLS--FLSNLRTLRLDYCNHLP 100 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~L~~~--~~~~lp~~~~--~l~~L~~L~l~~~~~~~ 100 (657)
+.+.+..+.+++|++..+.. ++-...++|+.|+|++| .+... .++. +..-|+.|-+.||...+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 67788888888887663322 23356788999999988 33322 2233 34458889999988433
Done!