Query 006185
Match_columns 657
No_of_seqs 400 out of 3454
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-41 4.2E-46 383.3 26.0 575 12-651 95-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 4E-40 1.4E-44 371.0 26.1 465 12-529 72-549 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-38 4.2E-43 351.2 34.1 521 4-621 20-558 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-36 3.9E-41 340.0 31.8 552 4-619 13-620 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.6E-36 8.8E-41 332.6 32.8 534 20-621 15-560 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-36 2.4E-40 333.6 31.6 548 3-598 33-624 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-35 3.4E-39 319.9 36.6 504 18-619 12-532 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.8E-34 9.5E-39 316.4 35.6 509 41-619 14-534 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.8E-34 6.1E-39 315.7 32.9 497 4-620 16-530 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-35 1.1E-39 319.8 24.4 477 4-620 14-509 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 3.6E-32 1.2E-36 297.4 36.3 478 18-619 8-505 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.4E-32 1.8E-36 308.0 32.5 515 3-593 12-557 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-32 2.2E-36 293.9 30.6 212 4-224 35-261 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-32 1.7E-36 308.4 30.7 521 20-620 7-559 (844)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-30 7.7E-35 287.2 35.4 532 20-619 34-578 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.6E-30 1.9E-34 276.5 32.0 460 20-566 3-479 (520)
17 4eco_A Uncharacterized protein 100.0 4.9E-31 1.7E-35 290.1 18.1 354 31-447 197-598 (636)
18 4eco_A Uncharacterized protein 100.0 6.3E-31 2.1E-35 289.2 18.3 415 17-529 81-598 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-30 5.1E-35 280.9 20.9 462 42-634 3-494 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 8.9E-30 3E-34 284.4 24.2 453 17-569 323-873 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 3.6E-30 1.2E-34 287.5 19.3 358 32-447 440-838 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-28 8.5E-33 265.7 31.5 457 15-620 29-509 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-27 6.2E-32 263.9 34.3 521 4-594 40-578 (635)
24 1o6v_A Internalin A; bacterial 100.0 2E-28 6.8E-33 259.9 24.8 343 14-446 43-385 (466)
25 1o6v_A Internalin A; bacterial 100.0 2.3E-27 7.9E-32 251.7 24.9 335 4-424 55-389 (466)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.3E-28 2.2E-32 262.5 18.3 446 3-504 39-509 (562)
27 4fmz_A Internalin; leucine ric 100.0 6.6E-27 2.3E-31 238.6 24.5 150 12-168 39-188 (347)
28 3v47_A TOLL-like receptor 5B a 99.9 1.4E-25 4.9E-30 237.8 29.6 364 20-447 13-406 (455)
29 1jl5_A Outer protein YOPM; leu 99.9 1.5E-26 5.2E-31 243.0 21.2 404 15-619 9-427 (454)
30 4fmz_A Internalin; leucine ric 99.9 2.6E-26 8.9E-31 234.2 21.7 292 4-387 53-344 (347)
31 3v47_A TOLL-like receptor 5B a 99.9 1.4E-26 4.8E-31 245.5 18.7 373 3-420 18-406 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-26 5.5E-31 243.1 17.9 187 11-224 36-222 (457)
33 1jl5_A Outer protein YOPM; leu 99.9 2.3E-26 8E-31 241.6 18.8 333 3-446 19-367 (454)
34 3bz5_A Internalin-J, INLJ; leu 99.9 7.4E-25 2.5E-29 230.4 27.0 160 37-222 40-199 (457)
35 3o6n_A APL1; leucine-rich repe 99.9 5.9E-25 2E-29 227.8 25.8 154 36-204 42-198 (390)
36 2id5_A Lingo-1, leucine rich r 99.9 1.2E-24 4.1E-29 231.9 25.5 192 19-223 13-209 (477)
37 2id5_A Lingo-1, leucine rich r 99.9 2.5E-24 8.4E-29 229.5 25.6 208 4-224 20-234 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 225.4 20.5 304 14-387 42-350 (390)
39 3oja_B Anopheles plasmodium-re 99.9 8.1E-24 2.8E-28 231.4 25.9 154 36-204 48-204 (597)
40 3oja_B Anopheles plasmodium-re 99.9 3.4E-23 1.1E-27 226.5 26.3 303 15-420 49-356 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 9.1E-23 3.1E-27 206.3 18.5 148 18-169 34-184 (332)
42 1xku_A Decorin; proteoglycan, 99.9 4.8E-22 1.6E-26 200.8 23.2 121 18-141 32-154 (330)
43 1xku_A Decorin; proteoglycan, 99.9 5.1E-22 1.7E-26 200.7 23.3 201 4-222 40-248 (330)
44 3ogk_B Coronatine-insensitive 99.9 9.2E-25 3.2E-29 239.8 2.1 128 61-201 110-252 (592)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.5E-22 1.5E-26 201.2 19.9 187 4-209 42-234 (332)
46 3ogk_B Coronatine-insensitive 99.9 7.4E-24 2.5E-28 232.6 4.7 171 43-223 54-252 (592)
47 4fcg_A Uncharacterized protein 99.9 4.3E-22 1.5E-26 200.3 17.0 218 16-253 80-311 (328)
48 2z80_A TOLL-like receptor 2, v 99.9 5.6E-22 1.9E-26 202.3 16.3 201 13-225 27-233 (353)
49 2p1m_B Transport inhibitor res 99.9 4.7E-24 1.6E-28 234.3 0.2 40 490-530 479-518 (594)
50 4fcg_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 198.8 15.9 203 6-221 92-308 (328)
51 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-21 7.4E-26 191.6 19.1 208 4-224 20-235 (285)
52 1ogq_A PGIP-2, polygalacturona 99.9 6.4E-22 2.2E-26 197.8 14.6 174 17-204 50-233 (313)
53 3zyj_A Leucine-rich repeat-con 99.9 7.5E-21 2.5E-25 200.0 19.4 197 11-221 36-238 (440)
54 2z80_A TOLL-like receptor 2, v 99.9 4.4E-21 1.5E-25 195.7 16.1 262 3-305 39-312 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 9.1E-21 3.1E-25 200.1 18.6 183 11-207 47-233 (452)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5.3E-24 195.4 26.2 256 17-387 40-295 (622)
57 2p1m_B Transport inhibitor res 99.8 3.8E-23 1.3E-27 227.1 -3.0 393 106-595 102-518 (594)
58 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-20 6.6E-25 184.8 16.7 193 19-224 13-211 (285)
59 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-21 9E-26 193.3 10.2 172 39-224 50-231 (313)
60 2z66_A Variable lymphocyte rec 99.8 3.9E-21 1.3E-25 192.0 11.0 192 20-223 10-208 (306)
61 3zyj_A Leucine-rich repeat-con 99.8 2.6E-20 8.8E-25 195.9 16.7 206 4-224 52-265 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 2.8E-20 9.4E-25 196.4 16.9 206 4-224 63-276 (452)
63 2z66_A Variable lymphocyte rec 99.8 2.5E-20 8.6E-25 186.1 14.9 230 4-253 16-258 (306)
64 1h6u_A Internalin H; cell adhe 99.8 9.4E-20 3.2E-24 181.5 18.2 199 6-225 30-228 (308)
65 1p9a_G Platelet glycoprotein I 99.8 1.3E-19 4.6E-24 178.5 18.5 200 12-225 5-206 (290)
66 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-21 1.1E-25 193.2 6.1 184 18-220 11-197 (317)
67 2z62_A TOLL-like receptor 4, v 99.8 2.3E-19 7.8E-24 176.2 19.1 208 4-225 16-235 (276)
68 2o6q_A Variable lymphocyte rec 99.8 6E-19 2.1E-23 172.4 20.8 201 12-225 10-216 (270)
69 3g06_A SSPH2 (leucine-rich rep 99.8 1E-18 3.5E-23 189.0 23.6 255 3-369 48-302 (622)
70 2o6q_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 170.6 21.5 188 4-204 25-217 (270)
71 1z7x_W Ribonuclease inhibitor; 99.8 5.2E-22 1.8E-26 210.7 -3.1 179 17-204 3-211 (461)
72 2xwt_C Thyrotropin receptor; s 99.8 2E-19 6.8E-24 172.4 14.3 202 5-223 21-235 (239)
73 1h6u_A Internalin H; cell adhe 99.8 1.1E-18 3.7E-23 173.8 19.0 184 4-208 50-233 (308)
74 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-21 1.3E-25 204.1 -0.6 363 13-420 24-438 (461)
75 3rfs_A Internalin B, repeat mo 99.8 1.4E-18 4.8E-23 169.9 14.9 199 5-222 29-230 (272)
76 1p9a_G Platelet glycoprotein I 99.8 3.9E-18 1.3E-22 168.0 18.1 185 4-204 19-207 (290)
77 3rfs_A Internalin B, repeat mo 99.8 3.9E-18 1.3E-22 166.8 17.4 196 15-225 17-216 (272)
78 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.5E-23 169.3 15.4 178 7-205 36-213 (291)
79 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-19 3.6E-24 182.2 3.7 238 14-281 31-275 (317)
80 3m19_A Variable lymphocyte rec 99.8 2E-17 7E-22 159.6 19.1 175 17-204 14-191 (251)
81 3oja_A Leucine-rich immune mol 99.8 3.7E-18 1.3E-22 181.0 14.1 167 37-222 32-199 (487)
82 1wwl_A Monocyte differentiatio 99.8 1E-18 3.5E-23 174.6 8.5 199 13-224 39-263 (312)
83 2z62_A TOLL-like receptor 4, v 99.7 1.1E-17 3.9E-22 164.1 15.5 189 4-205 37-237 (276)
84 2xwt_C Thyrotropin receptor; s 99.7 6.1E-18 2.1E-22 162.1 12.9 184 4-202 40-236 (239)
85 3m19_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 156.2 19.1 166 3-170 22-192 (251)
86 1wwl_A Monocyte differentiatio 99.7 5.4E-18 1.9E-22 169.3 11.6 215 19-253 65-306 (312)
87 1h6t_A Internalin B; cell adhe 99.7 6.8E-17 2.3E-21 159.3 16.2 189 16-225 23-211 (291)
88 3oja_A Leucine-rich immune mol 99.7 1.2E-17 3.9E-22 177.2 11.1 174 14-208 31-207 (487)
89 1m9s_A Internalin B; cell inva 99.7 4.5E-17 1.6E-21 176.0 14.7 183 5-208 31-213 (605)
90 4ay9_X Follicle-stimulating ho 99.7 1.3E-16 4.3E-21 162.1 15.4 156 13-170 6-167 (350)
91 4glp_A Monocyte differentiatio 99.7 6.2E-17 2.1E-21 161.6 10.1 217 17-253 64-304 (310)
92 1xeu_A Internalin C; cellular 99.7 1.9E-16 6.6E-21 153.4 13.2 174 13-208 15-188 (263)
93 4ezg_A Putative uncharacterize 99.7 2E-16 6.8E-21 146.4 12.5 151 37-205 42-194 (197)
94 1xeu_A Internalin C; cellular 99.7 4.2E-17 1.4E-21 158.1 8.2 156 5-169 29-184 (263)
95 3e6j_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 145.5 16.7 150 19-170 21-172 (229)
96 2v9t_B SLIT homolog 2 protein 99.7 5.5E-16 1.9E-20 145.9 15.0 156 11-169 6-164 (220)
97 2o6s_A Variable lymphocyte rec 99.7 5.7E-16 1.9E-20 144.8 14.6 148 20-169 10-160 (208)
98 2o6s_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 145.6 13.8 158 4-170 16-178 (208)
99 4ezg_A Putative uncharacterize 99.7 5.6E-16 1.9E-20 143.3 13.4 150 14-169 41-193 (197)
100 1m9s_A Internalin B; cell inva 99.7 6.3E-17 2.2E-21 174.9 7.5 190 15-225 19-208 (605)
101 2v70_A SLIT-2, SLIT homolog 2 99.6 1.7E-15 5.7E-20 142.6 14.4 156 11-169 6-165 (220)
102 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.5E-20 154.6 14.9 188 4-205 6-202 (361)
103 4glp_A Monocyte differentiatio 99.6 3.6E-16 1.2E-20 156.0 9.2 198 37-253 62-282 (310)
104 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.5E-20 154.6 14.0 162 5-168 28-200 (361)
105 3cvr_A Invasion plasmid antige 99.6 5.3E-15 1.8E-19 157.9 17.4 174 17-224 59-240 (571)
106 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.8E-21 160.6 5.3 219 18-253 48-282 (336)
107 3e6j_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 137.3 16.8 141 4-145 28-172 (229)
108 4ay9_X Follicle-stimulating ho 99.6 5E-15 1.7E-19 150.3 14.8 204 4-223 18-232 (350)
109 3cvr_A Invasion plasmid antige 99.6 1.4E-14 4.7E-19 154.8 18.7 168 4-204 68-242 (571)
110 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.3E-21 164.1 2.5 184 13-204 28-256 (386)
111 2v9t_B SLIT homolog 2 protein 99.6 1.6E-14 5.6E-19 135.8 16.0 140 3-143 19-163 (220)
112 2ast_B S-phase kinase-associat 99.6 5.5E-16 1.9E-20 156.9 5.4 195 17-224 70-282 (336)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-14 7.3E-19 135.0 15.5 144 3-147 19-168 (220)
114 3goz_A Leucine-rich repeat-con 99.6 2.6E-15 8.8E-20 153.3 9.5 204 14-225 19-264 (362)
115 2ca6_A RAN GTPase-activating p 99.6 1.9E-16 6.5E-21 163.4 1.0 86 37-122 30-135 (386)
116 3goz_A Leucine-rich repeat-con 99.6 2.6E-15 8.9E-20 153.3 6.9 174 22-204 3-208 (362)
117 2ell_A Acidic leucine-rich nuc 99.5 1.3E-14 4.3E-19 130.5 10.2 123 17-141 24-156 (168)
118 1dce_A Protein (RAB geranylger 99.5 5.9E-17 2E-21 174.1 -9.6 193 13-220 345-566 (567)
119 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6.2E-19 126.6 7.9 121 17-139 17-147 (149)
120 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 124.5 12.0 127 39-168 24-158 (168)
121 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.7E-19 129.9 6.5 128 37-168 17-151 (176)
122 2je0_A Acidic leucine-rich nuc 99.5 8.1E-14 2.8E-18 122.4 8.9 125 38-165 16-148 (149)
123 1w8a_A SLIT protein; signaling 99.5 4.2E-13 1.4E-17 123.2 13.0 137 11-149 3-143 (192)
124 1a9n_A U2A', U2A'; complex (nu 99.5 4.9E-14 1.7E-18 127.6 6.4 131 10-142 12-150 (176)
125 2o6r_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 119.1 14.3 127 18-145 8-137 (177)
126 2wfh_A SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 121.1 13.4 121 20-142 13-136 (193)
127 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.6E-17 119.7 14.3 125 42-170 13-139 (193)
128 4b8c_D Glucose-repressible alc 99.4 1.7E-13 5.8E-18 152.0 9.0 151 17-170 173-329 (727)
129 1w8a_A SLIT protein; signaling 99.4 1E-12 3.5E-17 120.6 11.7 124 42-169 11-138 (192)
130 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4E-18 153.3 5.2 135 33-169 217-353 (727)
131 3sb4_A Hypothetical leucine ri 99.4 1.8E-12 6.1E-17 130.3 10.4 190 16-220 48-327 (329)
132 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.4E-16 111.7 14.1 120 4-124 16-139 (177)
133 1dce_A Protein (RAB geranylger 99.3 5.2E-12 1.8E-16 135.6 11.5 122 39-164 441-567 (567)
134 2r9u_A Variable lymphocyte rec 99.3 3E-11 1E-15 108.6 12.9 103 20-123 15-119 (174)
135 1ds9_A Outer arm dynein; leuci 99.3 6.5E-14 2.2E-18 129.5 -5.8 103 37-142 46-150 (198)
136 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.3E-18 127.6 -5.2 154 40-198 24-180 (198)
137 3g39_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 105.8 12.3 103 19-122 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.2 1.6E-10 5.4E-15 103.8 11.3 105 41-149 14-121 (174)
139 3g39_A Variable lymphocyte rec 99.1 2.9E-10 9.8E-15 101.8 11.6 99 41-142 11-112 (170)
140 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8.3E-15 114.6 9.6 169 16-199 100-328 (329)
141 4fdw_A Leucine rich hypothetic 99.0 9.8E-09 3.4E-13 105.2 17.2 141 18-165 158-308 (401)
142 4fdw_A Leucine rich hypothetic 99.0 4.3E-09 1.5E-13 107.8 14.4 143 18-167 136-281 (401)
143 4fs7_A Uncharacterized protein 98.9 2E-08 6.9E-13 103.3 15.3 132 29-166 59-194 (394)
144 3un9_A NLR family member X1; l 98.9 3.3E-10 1.1E-14 114.9 0.5 159 38-205 71-252 (372)
145 2ifg_A High affinity nerve gro 98.8 1.2E-08 4E-13 103.2 11.8 101 21-122 12-116 (347)
146 4fs7_A Uncharacterized protein 98.8 1.9E-07 6.3E-12 96.0 20.6 133 51-201 59-194 (394)
147 3un9_A NLR family member X1; l 98.8 2.7E-10 9.4E-15 115.6 -2.5 153 16-170 71-252 (372)
148 2ifg_A High affinity nerve gro 98.8 1.7E-08 5.7E-13 102.1 10.1 93 6-98 20-115 (347)
149 3e4g_A ATP synthase subunit S, 98.5 3.6E-08 1.2E-12 86.6 3.7 94 492-598 61-154 (176)
150 3e4g_A ATP synthase subunit S, 98.5 6E-08 2E-12 85.2 4.4 92 436-571 61-155 (176)
151 2ra8_A Uncharacterized protein 98.4 3.1E-07 1E-11 92.3 6.5 128 37-168 137-290 (362)
152 2ra8_A Uncharacterized protein 98.3 2.3E-07 7.8E-12 93.2 4.6 153 13-170 135-320 (362)
153 4gt6_A Cell surface protein; l 98.3 4.7E-05 1.6E-09 77.9 22.0 100 40-141 65-169 (394)
154 4gt6_A Cell surface protein; l 98.1 5.5E-05 1.9E-09 77.5 17.1 155 7-166 51-214 (394)
155 1io0_A Tropomodulin; LRR prote 98.0 2.4E-06 8.2E-11 77.1 3.0 108 59-169 32-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.0 4E-06 1.4E-10 75.7 4.1 103 37-141 34-160 (185)
157 3rw6_A Nuclear RNA export fact 97.8 1.6E-06 5.4E-11 82.4 -1.6 78 60-138 167-257 (267)
158 3rw6_A Nuclear RNA export fact 97.7 2.4E-05 8.4E-10 74.2 4.1 104 59-163 137-257 (267)
159 4h09_A Hypothetical leucine ri 97.7 0.0057 1.9E-07 61.9 22.2 126 9-141 38-167 (379)
160 4h09_A Hypothetical leucine ri 96.9 0.0065 2.2E-07 61.5 12.3 105 58-165 212-318 (379)
161 3rfe_A Platelet glycoprotein I 96.6 0.0034 1.2E-07 52.3 6.2 55 20-75 11-67 (130)
162 3rfe_A Platelet glycoprotein I 94.7 0.056 1.9E-06 44.8 6.2 54 113-169 12-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.4 0.023 7.7E-07 50.7 3.4 86 81-168 65-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.3 0.04 1.4E-06 49.1 4.7 58 84-141 39-107 (197)
165 2lz0_A Uncharacterized protein 43.4 36 0.0012 26.1 4.9 43 52-95 9-52 (100)
166 2lz0_A Uncharacterized protein 42.3 31 0.0011 26.4 4.4 46 28-74 7-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-41 Score=383.29 Aligned_cols=575 Identities=17% Similarity=0.097 Sum_probs=348.9
Q ss_pred CCCCCCCccEEEccCCCcc-ccCC--CC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCC-CCcc---c
Q 006185 12 SINTFEDLTGISLMFNDIH-EVPD--GL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVS-PPSS---L 82 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~---~ 82 (657)
.+..+++|++|++++|.++ .+|. .+ .+++|++|++++|.+. .+|..++.++++|++|++++|.++. .|.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 6888999999999999987 5665 44 8899999999999877 5565555788999999999998864 3344 6
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
.++++|++|++++|. +.....++++++|++|++++|.++..+..++++++|++|++++|...+.+|.. ++++++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEE
T ss_pred ccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEE
Confidence 788888888888887 33333447788888888888887754444888888888888886544455554 7788888888
Q ss_pred EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC-CC-CCCccEEEEEEcCcc-Chhh-------
Q 006185 163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD-MS-LPNLTSFSITIGEED-TLND------- 231 (657)
Q Consensus 163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~-l~~L~~L~l~~~~~~-~~~~------- 231 (657)
++++|.+.. ..+. ..+++|++|++++|.+. .+|.. .. +++|+.|++.++... ..+.
T Consensus 253 ~Ls~n~l~~-----------~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 253 NISSNQFVG-----------PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp ECCSSCCEE-----------SCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred ECCCCcccC-----------ccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 888775432 1111 14445555555555442 33333 11 244555544433210 0000
Q ss_pred ----------HHHHHhhc-c-cccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEE
Q 006185 232 ----------FIELFLEN-F-NKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFL 299 (657)
Q Consensus 232 ----------~~~~~~~~-~-~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L 299 (657)
+.+.++.. + ..+.++.++++++.-...+|.++....++|+.|+++++.-....++.+....+++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 11111111 1 22555666666553333455555554236666666655322222223222235667777
Q ss_pred EeecCCCceEEeeccccccccccccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccchhHHHhccc
Q 006185 300 YIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQN 377 (657)
Q Consensus 300 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~ 377 (657)
++++| .+...... ....+++|+.|++++|. + .+..| .+.+++|+.|++++|. +.+..|..+ ..+++
T Consensus 400 ~L~~n-~l~~~~p~----~l~~l~~L~~L~Ls~N~-l----~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~ 467 (768)
T 3rgz_A 400 YLQNN-GFTGKIPP----TLSNCSELVSLHLSFNY-L----SGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQEL-MYVKT 467 (768)
T ss_dssp ECCSS-EEEEECCG----GGGGCTTCCEEECCSSE-E----ESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG-GGCTT
T ss_pred ECCCC-ccccccCH----HHhcCCCCCEEECcCCc-c----cCcccHHHhcCCCCCEEECCCCc-ccCcCCHHH-cCCCC
Confidence 77777 33322211 23357788888888775 2 22233 2367788888888864 443355544 56788
Q ss_pred CcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccccccccc
Q 006185 378 LQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANL 457 (657)
Q Consensus 378 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l 457 (657)
|++|+++++.-...+ |..+..+++|+.|++++|.--..+ +.....+++|++|++++|. ++...|..+
T Consensus 468 L~~L~L~~N~l~~~~---------p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~-l~~~~p~~l 534 (768)
T 3rgz_A 468 LETLILDFNDLTGEI---------PSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNNS-FSGNIPAEL 534 (768)
T ss_dssp CCEEECCSSCCCSCC---------CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSC-CEEECCGGG
T ss_pred ceEEEecCCcccCcC---------CHHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCCc-ccCcCCHHH
Confidence 888888875432222 556677888888888887533233 2334557888888888874 444457778
Q ss_pred ccccchhhhhhhccccccee------------------------------------------------------------
Q 006185 458 GKKAAAEEMVLYRNRRYQIH------------------------------------------------------------ 477 (657)
Q Consensus 458 ~~~~~L~~l~l~~~~~l~~~------------------------------------------------------------ 477 (657)
+.+++|+.|+++++.-....
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 88888888887765321000
Q ss_pred ---ecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEec
Q 006185 478 ---IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITF 554 (657)
Q Consensus 478 ---~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~ 554 (657)
..+....+..+..+++|+.|+++++. ++...|.. ++.+++|+.|+++++.--..+| .....+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip-------------~~l~~L 679 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKE-IGSMPYLFILNLGHNDISGSIP-------------DEVGDL 679 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGG-GGGCTTCCEEECCSSCCCSCCC-------------GGGGGC
T ss_pred cccceecccCchhhhccccccEEECcCCc-ccccCCHH-HhccccCCEEeCcCCccCCCCC-------------hHHhCC
Confidence 00111224456667889999998875 44333433 5788999999999886433443 223357
Q ss_pred cccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccceeeccCchhHHHHHHH
Q 006185 555 PSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYV 634 (657)
Q Consensus 555 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~ 634 (657)
++|+.|+++++.--..+| ..+. .+++|++|++++++--..+|.+.. ..++....+.++|.+-...+ ..|.
T Consensus 680 ~~L~~LdLs~N~l~g~ip-~~l~---~l~~L~~L~ls~N~l~g~iP~~~~--~~~~~~~~~~gN~~Lcg~~l----~~C~ 749 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIP-QAMS---ALTMLTEIDLSNNNLSGPIPEMGQ--FETFPPAKFLNNPGLCGYPL----PRCD 749 (768)
T ss_dssp TTCCEEECCSSCCEECCC-GGGG---GCCCCSEEECCSSEEEEECCSSSS--GGGSCGGGGCSCTEEESTTS----CCCC
T ss_pred CCCCEEECCCCcccCcCC-hHHh---CCCCCCEEECcCCcccccCCCchh--hccCCHHHhcCCchhcCCCC----cCCC
Confidence 899999999975444667 6665 678999999999866666886652 35566677778886643222 2688
Q ss_pred HhhhhhhHHHhhhcCCC
Q 006185 635 YNEKKIWEKQAMKSGIS 651 (657)
Q Consensus 635 ~~~~~~~~~i~~ip~v~ 651 (657)
...+++|++|+|+|.+.
T Consensus 750 ~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 750 PSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCC--------------
T ss_pred CCccCCCCCCCCccccC
Confidence 88899999999999764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-40 Score=370.98 Aligned_cols=465 Identities=18% Similarity=0.109 Sum_probs=331.6
Q ss_pred CCCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc-CCCc-hhhcCCCCccEEEecCCcCC-CCCccc-cCCC
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL-VIPD-PFFQGMKDLKVLDLGGIRMV-SPPSSL-SFLS 86 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~-~~~~~l~~Lr~L~L~~~~~~-~lp~~~-~~l~ 86 (657)
++..+++|+.++++.+.+..+|..+ .+++|++|++++|.+. .+|. ..|+++++|++|++++|.+. ..|..+ .+++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 5778899999999999988887777 8999999999999988 4555 13699999999999999885 566655 8999
Q ss_pred CCcEEEccCCCCCCC-Ccc---cCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 87 NLRTLRLDYCNHLPD-LSL---IGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 87 ~L~~L~l~~~~~~~~-~~~---~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
+|++|++++|..... +.. ++++++|++|++++|.++.... +.++++|++|++++|...+.+|. ++++++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEE
Confidence 999999999994433 333 8899999999999998875433 48999999999999766555665 8999999999
Q ss_pred EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccc-
Q 006185 163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFN- 241 (657)
Q Consensus 163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~- 241 (657)
++++|.+.. ..+..++.+++|+.|++++|..........+++|+.|++.++. +.+.+++.+.
T Consensus 229 ~Ls~n~l~~-----------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~------l~~~ip~~~~~ 291 (768)
T 3rgz_A 229 DISGNKLSG-----------DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK------FTGEIPDFLSG 291 (768)
T ss_dssp ECCSSCCCS-----------CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSE------EEESCCCCSCT
T ss_pred ECcCCcCCC-----------cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCc------cCCccCHHHHh
Confidence 999997642 5678899999999999999998543333488999999998763 2223333332
Q ss_pred -ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCce-EEeeccccccc
Q 006185 242 -KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMK-CLLNSLERTQR 319 (657)
Q Consensus 242 -~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~ 319 (657)
.+.++.++++++.-...+|.++... ++|+.|+++++.- ....|......+++|++|++++| .+. .++.. .
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l-~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-----l 363 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFN-EFSGELPES-----L 363 (768)
T ss_dssp TCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEE-EEECCHHHHTTCTTCCEEECCSS-EEEECCCTT-----H
T ss_pred hcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcc-cCcCCHHHHhcCCCCCEEeCcCC-ccCccccHH-----H
Confidence 2789999999885544566666554 8999999988843 32222211235889999999998 443 22222 2
Q ss_pred cccc-cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccc
Q 006185 320 VTLR-KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERV 398 (657)
Q Consensus 320 ~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 398 (657)
..++ +|+.|+++++. ++...........+++|++|++++|. +++..|..+ ..+++|++|+++++.--..+
T Consensus 364 ~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~------ 434 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNG-FTGKIPPTL-SNCSELVSLHLSFNYLSGTI------ 434 (768)
T ss_dssp HHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSE-EEEECCGGG-GGCTTCCEEECCSSEEESCC------
T ss_pred HhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCc-cccccCHHH-hcCCCCCEEECcCCcccCcc------
Confidence 2344 89999998885 22111111111136788999998864 444456554 67888889988886322222
Q ss_pred cccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185 399 NIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI 478 (657)
Q Consensus 399 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~ 478 (657)
|..+..+++|+.|++++|.--..+ +.....+++|++|++++| +++...|..++.+++|+.|+++++
T Consensus 435 ---p~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N------- 500 (768)
T 3rgz_A 435 ---PSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN------- 500 (768)
T ss_dssp ---CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-------
T ss_pred ---cHHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-------
Confidence 556677888888888887533232 233445778888888886 445455777888888888888774
Q ss_pred cccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185 479 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP 529 (657)
Q Consensus 479 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 529 (657)
.+....|..+..+++|+.|++++|.-...+ +.. +..+++|+.|++++|+
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~-l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAE-LGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEEC-CGG-GGGCTTCCEEECCSSE
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcC-CHH-HcCCCCCCEEECCCCc
Confidence 233334555667778888888777533333 332 4677778888877765
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-38 Score=351.16 Aligned_cols=521 Identities=19% Similarity=0.149 Sum_probs=305.3
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-Cc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PS 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~ 80 (657)
+.+++.+|. ...+++++|++++|.++.++... ++++|++|++++|.+..+++..|.++++|++|++++|.++.+ |.
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 20 DQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 345566663 12366677777777666655422 666777777777666666555566677777777777666654 56
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.|+++++|++|++++|.....+ ..++++++|++|++++|.++ .+|..++++++|++|++++| .++.++...++.+.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhh
Confidence 6666777777777766644433 55666777777777776665 35666667777777777663 34444333355555
Q ss_pred cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc--cCCCC-CCCCCccEEEEEEcCccChh
Q 006185 158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE--IMPSD-MSLPNLTSFSITIGEEDTLN 230 (657)
Q Consensus 158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~ 230 (657)
+|+ +|++++|.+. ..+.......+|+.|++++|... .++.. ..+++|+.+.+.........
T Consensus 178 ~L~~~l~~L~l~~n~l~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPID------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp HCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ccccccceeeccCCCcc------------eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 443 5666666543 22222223336666666666542 11111 34555555555432111000
Q ss_pred ---hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCc
Q 006185 231 ---DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEM 307 (657)
Q Consensus 231 ---~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l 307 (657)
.+....++.+.. -.++.+.+.....+....+.+ ..+++|+.|++.++ .+
T Consensus 246 ~l~~~~~~~~~~l~~-------------------------l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~~ 297 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCD-------------------------VTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGV-SI 297 (606)
T ss_dssp CCSCCCGGGGTTGGG-------------------------SEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESC-CC
T ss_pred cccccChHHhhhhhh-------------------------ccHhheecccccccccccccc--ccCCCCCEEEecCc-cc
Confidence 000000111110 245555555555555555542 34777777777777 44
Q ss_pred eEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185 308 KCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE 387 (657)
Q Consensus 308 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~ 387 (657)
..++ . ...+++|++|++++|.- + .+|.-.+++|++|++++|..+... +. ..+++|++|+++++.
T Consensus 298 ~~l~-~-----l~~~~~L~~L~l~~n~l-~-----~lp~~~l~~L~~L~l~~n~~~~~~-~~---~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 298 KYLE-D-----VPKHFKWQSLSIIRCQL-K-----QFPTLDLPFLKSLTLTMNKGSISF-KK---VALPSLSYLDLSRNA 361 (606)
T ss_dssp CCCC-C-----CCTTCCCSEEEEESCCC-S-----SCCCCCCSSCCEEEEESCSSCEEC-CC---CCCTTCCEEECCSSC
T ss_pred hhhh-h-----ccccccCCEEEcccccC-c-----ccccCCCCccceeeccCCcCccch-hh---ccCCCCCEEECcCCc
Confidence 4443 1 22367777777777752 2 222226777777777777555442 21 356777777777752
Q ss_pred cceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc-cccccccchhhh
Q 006185 388 LLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP-ANLGKKAAAEEM 466 (657)
Q Consensus 388 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~-~~l~~~~~L~~l 466 (657)
++.+.. .+..+..+++|+.|++++|. ++.++ .....+++|++|++++|. +....| ..+..+++|++|
T Consensus 362 -l~~~~~------~~~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 362 -LSFSGC------CSYSDLGTNSLRHLDLSFNG-AIIMS---ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp -EEEEEE------CCHHHHCCSCCCEEECCSCS-EEEEC---CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEE
T ss_pred -cCCCcc------hhhhhccCCcccEeECCCCc-cccch---hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEE
Confidence 222210 02344567777777777764 55443 234456777778777764 344434 567777777777
Q ss_pred hhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccC
Q 006185 467 VLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQG 546 (657)
Q Consensus 467 ~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~ 546 (657)
+++++. +....+..+..+++|++|++++|.--....+ ..+..+++|++|++++|. ++.++.
T Consensus 430 ~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~---------- 490 (606)
T 3vq2_A 430 DISYTN-------TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISW---------- 490 (606)
T ss_dssp ECTTSC-------CEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECT----------
T ss_pred ECcCCC-------CCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCc-CCccCh----------
Confidence 777642 2223355667788888888888753322222 234678888888888884 444421
Q ss_pred CCcceEeccccCeeEcCcCCCcccc-ccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccceee
Q 006185 547 ASTKKITFPSLFSIKLCDLGSLTCF-SSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKYC 621 (657)
Q Consensus 547 ~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~l 621 (657)
.....+++|++|+++++ +++.+ | .... .+++|++|++++|. ++.+|.....+|++|+.|+++++|..
T Consensus 491 --~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~---~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 491 --GVFDTLHRLQLLNMSHN-NLLFLDS-SHYN---QLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp --TTTTTCTTCCEEECCSS-CCSCEEG-GGTT---TCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred --hhhcccccCCEEECCCC-cCCCcCH-HHcc---CCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 11224788899999887 45555 4 5555 57889999998874 77888877777667889998887743
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-36 Score=340.00 Aligned_cols=552 Identities=15% Similarity=0.131 Sum_probs=303.5
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+.++.++|.- ..+++++|++++|.++.++... ++++|++|++++|.+..+++..|+++++|++|++++|.++.+|.
T Consensus 13 ~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 13 HLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence 4567778742 2378999999999988887643 78899999999998887777778899999999999999888886
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhh--cC
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLS--RL 156 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~--~l 156 (657)
.|+++++|++|++++|.....+ ..++++++|++|++++|.++.. |..++++++|++|++++| .++.++...+. .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhcccc
Confidence 5889999999999998855544 6788999999999999988854 456888999999999985 45566554343 45
Q ss_pred ccCcEEEcccCccccccccccccccccchhhhcCCCC---------------------------ccEEEeecCCCccCCC
Q 006185 157 RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR---------------------------LTSLHIDIPKGEIMPS 209 (657)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~---------------------------L~~L~l~~~~~~~~~~ 209 (657)
++|++|++++|.+.. ..+..++.+.+ |+.|+++++.+..+..
T Consensus 171 ~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 171 SSLKKLELSSNQIKE-----------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp CEESEEECTTCCCCC-----------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred ccccEEECCCCcccc-----------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 889999998886542 22333444444 4444444444332221
Q ss_pred C--CCC--CCccEEEEEEcCccChhhHHHHHhhccc-ccCcceEEeecccchhhhHHHHHHHHccccEEEEeecccccc-
Q 006185 210 D--MSL--PNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLEN- 283 (657)
Q Consensus 210 ~--~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~- 283 (657)
. ..+ ++|+.|+++++..... .+..+. .+.++.++++++.-....|.++.. +++|+.|++.++..-..
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVV------GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSCCBSEECTTTTTT-CTTCCEEECTTCBCCC--
T ss_pred hHhhccCcCCCCEEECCCCCcCcc------CcccccCcccccEeeCCCCccCccChhhhcC-CCCccEEeccchhhhccc
Confidence 1 111 2255555443321110 011111 144444444444221111222222 14444444443210000
Q ss_pred ---ccc---cccccccccceEEEeecCCCceEEeeccccccccccccccEEecccccc-ccccccccCCCCCCCCccEEE
Q 006185 284 ---IFS---NLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN-FVEICHGQLPAGCLSNVKRLD 356 (657)
Q Consensus 284 ---~~~---~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~ 356 (657)
..| ......+++|++|++++| .+..++.. ....+++|+.|+++++.- +..+....+..-..++|+.|+
T Consensus 313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~ 387 (680)
T 1ziw_A 313 SLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387 (680)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEE
T ss_pred ccccccccChhhcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEE
Confidence 000 011123445555555544 22222111 122345555555554421 100000000000123455555
Q ss_pred EecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccC
Q 006185 357 VVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLH 436 (657)
Q Consensus 357 l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 436 (657)
+++| .+..+.|..+ ..+++|++|+++++.--..+. +..+..+++|++|+++++. +..+. ......++
T Consensus 388 L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~--------~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~~~ 454 (680)
T 1ziw_A 388 LTKN-KISKIESDAF-SWLGHLEVLDLGLNEIGQELT--------GQEWRGLENIFEIYLSYNK-YLQLT--RNSFALVP 454 (680)
T ss_dssp CTTS-CCCEECTTTT-TTCTTCCEEECCSSCCEEECC--------SGGGTTCTTCCEEECCSCS-EEECC--TTTTTTCT
T ss_pred CCCC-CCCeEChhhh-hCCCCCCEEeCCCCcCccccC--------cccccCcccccEEecCCCC-cceeC--hhhhhcCc
Confidence 5553 2333333222 455566666665543221110 1234455666666666653 33322 11223456
Q ss_pred CccEEEeccCccc-ccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceeccc----
Q 006185 437 NLKKVRVEECDEL-RQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTT---- 511 (657)
Q Consensus 437 ~L~~L~i~~C~~L-~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~---- 511 (657)
+|++|++.+|.-- ....|..+..+++|+.|+++++ .+....+..+..+++|+.|+++++. ++.+...
T Consensus 455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-------~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 526 (680)
T 1ziw_A 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-------NIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPG 526 (680)
T ss_dssp TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTT
T ss_pred ccccchhccccccccccCCcccccCCCCCEEECCCC-------CCCcCChhhhccccccCEEeCCCCC-ccccchhhccC
Confidence 6666666665321 0223555666666666666653 2222223345566677777776653 4333111
Q ss_pred ---chhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeecccccee
Q 006185 512 ---SMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEAL 588 (657)
Q Consensus 512 ---~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L 588 (657)
..+..+++|++|+++++. ++.++. .....+++|+.|++++ .+++.++ .+.. . .+++|+.|
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~-l~~i~~------------~~~~~l~~L~~L~Ls~-N~l~~l~-~~~~-~-~l~~L~~L 589 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNG-FDEIPV------------EVFKDLFELKIIDLGL-NNLNTLP-ASVF-N-NQVSLKSL 589 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSC-CCCCCT------------TTTTTCTTCCEEECCS-SCCCCCC-TTTT-T-TCTTCCEE
T ss_pred CcchhhcCCCCCCEEECCCCC-CCCCCH------------HHcccccCcceeECCC-CCCCcCC-HhHh-C-CCCCCCEE
Confidence 123556777777776653 444431 1122477888888877 4788887 4432 1 56889999
Q ss_pred eeccCCCcceecCCCcc-ccceeceeEeccce
Q 006185 589 QIIDCPGMKTFGYGNQL-TPKLLKGVEFGYCK 619 (657)
Q Consensus 589 ~i~~C~~l~~lp~~~~~-l~~~L~~L~i~~C~ 619 (657)
+++++ .++.++..... ..++|+.|++.++|
T Consensus 590 ~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 590 NLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred ECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 99887 67776653221 12568888888765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-36 Score=332.61 Aligned_cols=534 Identities=16% Similarity=0.144 Sum_probs=312.2
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 98 (657)
++++.++..++++|..+. +++++|++++|.+..+++..|.++++|++|++++|++..+ |..|+++++|++|++++|..
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 345555555555554432 2455666666655555444455566666666666655433 44555566666666665553
Q ss_pred CC-CCcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185 99 LP-DLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE 176 (657)
Q Consensus 99 ~~-~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~ 176 (657)
.. .|..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 167 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY----- 167 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE-----
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc-----
Confidence 22 234555566666666666655554 3445556666666666532 333211113345566666665554431
Q ss_pred cccccccchhhhcCCCCcc--EEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185 177 EDTRSNAKFIELGALSRLT--SLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD 253 (657)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 253 (657)
..+..++.+++|+ .|++++|.+..++.. .....|+.|++.++. ..+ ..+..+....+..+.+...
T Consensus 168 ------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~--~~~----~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 168 ------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ--NLL----VIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp ------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS--CHH----HHHHHTTTCEEEEEECCCC
T ss_pred ------cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch--hHH----HHhhhccccchhheechhh
Confidence 2234455555555 555555555433332 333455555554332 111 1111222222222222211
Q ss_pred cch--hhhHHHHHHHH--ccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEe
Q 006185 254 MRI--SALHSWIKNLL--LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLF 329 (657)
Q Consensus 254 ~~~--~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 329 (657)
... ..++......+ .+++.|+++++ .+.+..+. ....+++|++|++++| .++.++.... .+++|++|+
T Consensus 236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~~l~-----~l~~L~~L~ 307 (606)
T 3t6q_A 236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSN-TFHCFSGLQELDLTAT-HLSELPSGLV-----GLSTLKKLV 307 (606)
T ss_dssp TTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTT-TTTTCTTCSEEECTTS-CCSCCCSSCC-----SCTTCCEEE
T ss_pred ccccccccChhHhchhhcCceeEEEeecC-ccCccCHH-HhccccCCCEEeccCC-ccCCCChhhc-----ccccCCEEE
Confidence 100 00111111111 27888888877 44444433 2245899999999999 6666655433 488999999
Q ss_pred ccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCC
Q 006185 330 IRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFS 409 (657)
Q Consensus 330 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 409 (657)
++++. ++... ....+.+++|++|++++|..... .+...+..+++|++|+++++.- +.+.. .+..+..++
T Consensus 308 l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~------~~~~~~~l~ 376 (606)
T 3t6q_A 308 LSANK-FENLC--QISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSHDDI-ETSDC------CNLQLRNLS 376 (606)
T ss_dssp CTTCC-CSBGG--GGCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCSSCC-CEEEE------STTTTTTCT
T ss_pred CccCC-cCcCc--hhhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCCCcc-ccccC------cchhcccCC
Confidence 99885 32211 11234789999999999765444 3443346889999999998543 32210 133467789
Q ss_pred cccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCC
Q 006185 410 SLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTP 489 (657)
Q Consensus 410 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~ 489 (657)
+|++|+++++. ++.+. +.....+++|++|++++|.--...++..+..+++|++|+++++ .+....+..+.
T Consensus 377 ~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~~~ 446 (606)
T 3t6q_A 377 HLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-------LLDISSEQLFD 446 (606)
T ss_dssp TCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-------CCBTTCTTTTT
T ss_pred CCCEEECCCCc-CCcCC--HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-------ccCCcCHHHHh
Confidence 99999999874 44432 2234457899999999975444444556888999999999874 23333456677
Q ss_pred CCCCccEEEEecCCCcce-ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCc
Q 006185 490 SLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSL 568 (657)
Q Consensus 490 ~~~~L~~L~i~~c~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 568 (657)
.+++|+.|++++|.--.. +.....+..+++|++|++++|. ++.++. .....+++|+.|+++++ ++
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~Ls~N-~l 512 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ------------HAFTSLKMMNHVDLSHN-RL 512 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECCSS-CC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh------------hhhccccCCCEEECCCC-cc
Confidence 899999999999863321 2222446789999999999985 554431 12225899999999997 45
Q ss_pred cccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEeccceee
Q 006185 569 TCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKYC 621 (657)
Q Consensus 569 ~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~l 621 (657)
+..+..+.. .+++| .|+++++ +++.+|.. +..+ ++|+.|++++||..
T Consensus 513 ~~~~~~~l~---~l~~L-~L~L~~N-~l~~~~~~~~~~l-~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 513 TSSSIEALS---HLKGI-YLNLASN-HISIILPSLLPIL-SQQRTINLRQNPLD 560 (606)
T ss_dssp CGGGGGGGT---TCCSC-EEECCSS-CCCCCCGGGHHHH-HTSSEEECTTCCEE
T ss_pred CcCChhHhC---ccccc-EEECcCC-cccccCHhhcccC-CCCCEEeCCCCCcc
Confidence 554414554 57889 9999998 55565543 3444 67899999999853
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.1e-36 Score=333.58 Aligned_cols=548 Identities=18% Similarity=0.204 Sum_probs=380.9
Q ss_pred CCCCCCCCCC--CCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC
Q 006185 3 AGVELKDWPS--INTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP 78 (657)
Q Consensus 3 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 78 (657)
+++.++.+|. +..+++|++|++++|.++.++... ++++|++|++++|.+..+|+..|+++++|++|++++|+++.+
T Consensus 33 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 33 THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc
Confidence 3556777773 889999999999999999876554 899999999999999999988789999999999999999887
Q ss_pred C-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-c--cCCCCCCEEEccCCCCCCCCchhHh
Q 006185 79 P-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-F--GRLSHLRLLDLTDCYNLELIPPGVL 153 (657)
Q Consensus 79 p-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i--~~l~~L~~L~l~~c~~~~~~~~~~~ 153 (657)
+ ..|+++++|++|++++|..... |..++++++|++|++++|.++.++.. + ..+++|++|++++| .++.++...+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~ 191 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCF 191 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGG
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhh
Confidence 6 6799999999999999985443 57789999999999999999977654 3 36789999999996 4555555446
Q ss_pred hcCccCcEEEcccCccccccc-------------cc--cc-cccccchhhhcCCC--CccEEEeecCCCccCCCC--CCC
Q 006185 154 SRLRKLEELYMSHSFCHWQFE-------------SE--ED-TRSNAKFIELGALS--RLTSLHIDIPKGEIMPSD--MSL 213 (657)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~-------------g~--~~-~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~--~~l 213 (657)
..+.+|+.|++.++.+..... .. .. .-....+..+..++ +|+.|++++|.+..++.. ..+
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 271 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc
Confidence 666555555544432210000 00 00 00012344555554 499999999998666543 678
Q ss_pred CCccEEEEEEcCccChhhHHHHHhhccc-ccCcceEEeecccc--------hhhhHHHHHHHHccccEEEEeeccccccc
Q 006185 214 PNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRAMGLSQDMR--------ISALHSWIKNLLLRSEILALIEVNDLENI 284 (657)
Q Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~l~~~~~--------~~~l~~~~~~~~~~L~~L~L~~~~~l~~~ 284 (657)
++|+.|++.++.... ..+..+. .+.++.+++.++.. +..+++.....+++|+.|+++++. +...
T Consensus 272 ~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~ 344 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQH------LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGI 344 (680)
T ss_dssp TTCCEEECCSCCBSE------ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCC
T ss_pred ccccEeeCCCCccCc------cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCC
Confidence 999999998763222 1122232 37888888876521 111111122234899999998873 4444
Q ss_pred cccccccccccceEEEeecCC-CceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCc
Q 006185 285 FSNLANDDFNELMFLYIFGCN-EMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSM 363 (657)
Q Consensus 285 ~~~l~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 363 (657)
.+. ....+++|++|++++|. .+..++.... .....++|+.|+++++. ++.+.. .....+++|+.|+++++.-
T Consensus 345 ~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f--~~~~~~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N~l- 417 (680)
T 1ziw_A 345 KSN-MFTGLINLKYLSLSNSFTSLRTLTNETF--VSLAHSPLHILNLTKNK-ISKIES--DAFSWLGHLEVLDLGLNEI- 417 (680)
T ss_dssp CTT-TTTTCTTCCEEECTTCBSCCCEECTTTT--GGGTTSCCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSSCC-
T ss_pred Chh-HhccccCCcEEECCCCchhhhhcchhhh--cccccCcCceEECCCCC-CCeECh--hhhhCCCCCCEEeCCCCcC-
Confidence 333 22458999999999884 2333333211 11123689999999986 332211 1234789999999999654
Q ss_pred ccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEe
Q 006185 364 LKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRV 443 (657)
Q Consensus 364 ~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i 443 (657)
....|...+..+++|++|+++++. +..+. +..+..+++|+.|++.++. ++.+...+.....+++|++|++
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNK-YLQLT--------RNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCS-EEECC--------TTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEEC
T ss_pred ccccCcccccCcccccEEecCCCC-cceeC--------hhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEEC
Confidence 333443444789999999999975 33321 4456779999999999964 3332223444567899999999
Q ss_pred ccCcccccccccccccccchhhhhhhcccccceeecccc-----cCCCCCCCCCCccEEEEecCCCcceecccchhhccc
Q 006185 444 EECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATT-----STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLV 518 (657)
Q Consensus 444 ~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~-----~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~ 518 (657)
+++ +++.+++..+..+++|++|+++++. +. .++. .....+..+++|+.|+++++ +++.+ +...+..++
T Consensus 488 s~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~---~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~ 560 (680)
T 1ziw_A 488 SNN-NIANINDDMLEGLEKLEILDLQHNN-LA---RLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVEVFKDLF 560 (680)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC-CG---GGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred CCC-CCCcCChhhhccccccCEEeCCCCC-cc---ccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHHHccccc
Confidence 996 5788888889999999999999753 11 1111 11223678899999999887 56665 444457899
Q ss_pred CCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcce
Q 006185 519 RLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKT 598 (657)
Q Consensus 519 ~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~ 598 (657)
+|++|+++++ .++.++.. ....+++|+.|+++++ +++.++ .... ...+++|++|+++++|-.-+
T Consensus 561 ~L~~L~Ls~N-~l~~l~~~------------~~~~l~~L~~L~L~~N-~l~~~~-~~~~-~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 561 ELKIIDLGLN-NLNTLPAS------------VFNNQVSLKSLNLQKN-LITSVE-KKVF-GPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TCCEEECCSS-CCCCCCTT------------TTTTCTTCCEEECTTS-CCCBCC-HHHH-HHHHTTCSEEECTTCCCCBC
T ss_pred CcceeECCCC-CCCcCCHh------------HhCCCCCCCEEECCCC-cCCccC-hhHh-cccccccCEEEccCCCcccC
Confidence 9999999876 46665421 1124799999999996 788876 3321 11368999999998765443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-35 Score=319.94 Aligned_cols=504 Identities=14% Similarity=0.117 Sum_probs=365.5
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~ 96 (657)
.-++++.+++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 12 ~~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 34689999999999998664 7899999999999988887789999999999999999876 668999999999999999
Q ss_pred CCCCC-CcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcccccc
Q 006185 97 NHLPD-LSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 97 ~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
..... |..++++++|++|++++|.++.+| ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+..
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~-- 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT-- 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE--
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee--
Confidence 95555 789999999999999999999877 679999999999999965443 46776 8999999999999997653
Q ss_pred ccccccccccchhhhcCCCC----ccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185 174 ESEEDTRSNAKFIELGALSR----LTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 248 (657)
..+..++.+++ ++.|++++|.+..++.. ....+|+.|++.++...
T Consensus 168 ---------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~--------------------- 217 (606)
T 3vq2_A 168 ---------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS--------------------- 217 (606)
T ss_dssp ---------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC---------------------
T ss_pred ---------cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc---------------------
Confidence 22333444433 55899999998777765 44458888888865211
Q ss_pred EeecccchhhhHHHHHHHHccccEEEEeecc--ccccccccccccccc-----cceEEEeecCCCceEEeeccccccccc
Q 006185 249 GLSQDMRISALHSWIKNLLLRSEILALIEVN--DLENIFSNLANDDFN-----ELMFLYIFGCNEMKCLLNSLERTQRVT 321 (657)
Q Consensus 249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~--~l~~~~~~l~~~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~ 321 (657)
-...|.++..+ ++++.+.+.... .... ...+....+. .++.+.+..+..+..... ....
T Consensus 218 -------~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~-l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-----~~~~ 283 (606)
T 3vq2_A 218 -------SNIMKTCLQNL-AGLHVHRLILGEFKDERN-LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-----KFHC 283 (606)
T ss_dssp -------HHHHHHHHHTT-TTCEEEEEEEECCTTSCC-CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-----SCGG
T ss_pred -------hhHHHHHhccc-cccccccccccccccCCc-ccccChHHhhhhhhccHhheecccccccccccc-----cccc
Confidence 01133343333 666666664321 1100 0011111112 455666644434432222 2345
Q ss_pred cccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIA 401 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 401 (657)
+++|+.|+++++. ++.+ .....+++|++|++++|.. .. +|. + .+++|++|+++++..+..+
T Consensus 284 l~~L~~L~l~~~~-~~~l----~~l~~~~~L~~L~l~~n~l-~~-lp~-~--~l~~L~~L~l~~n~~~~~~--------- 344 (606)
T 3vq2_A 284 LANVSAMSLAGVS-IKYL----EDVPKHFKWQSLSIIRCQL-KQ-FPT-L--DLPFLKSLTLTMNKGSISF--------- 344 (606)
T ss_dssp GTTCSEEEEESCC-CCCC----CCCCTTCCCSEEEEESCCC-SS-CCC-C--CCSSCCEEEEESCSSCEEC---------
T ss_pred CCCCCEEEecCcc-chhh----hhccccccCCEEEcccccC-cc-ccc-C--CCCccceeeccCCcCccch---------
Confidence 8999999999986 3322 2345788999999999876 55 553 3 8899999999998665533
Q ss_pred ccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeeccc
Q 006185 402 KEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHAT 481 (657)
Q Consensus 402 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~ 481 (657)
....+++|+.|+++++. ++.+...+.....+++|++|++++|. ++.+ |..+..+++|+.|++.++ .+.
T Consensus 345 --~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~~~~~~l~~L~~L~l~~n-------~l~ 412 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM-SANFMGLEELQHLDFQHS-------TLK 412 (606)
T ss_dssp --CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEE-CCCCTTCTTCCEEECTTS-------EEE
T ss_pred --hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccc-hhhccCCCCCCeeECCCC-------ccC
Confidence 24578999999999974 55432223344568999999999986 5655 588999999999999975 222
Q ss_pred ccCC-CCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCee
Q 006185 482 TSTS-SPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSI 560 (657)
Q Consensus 482 ~~~~-~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L 560 (657)
...+ ..+..+++|+.|++++|. +....+. .+..+++|++|++++|.--..+.. .....+++|+.|
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L 478 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTN-TKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLS------------NVFANTTNLTFL 478 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSC-CEECCTT-TTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEE
T ss_pred CccChhhhhccccCCEEECcCCC-CCccchh-hhcCCCCCCEEECCCCcCCCcchH------------HhhccCCCCCEE
Confidence 2223 467789999999999987 4443333 357899999999999863322211 122258999999
Q ss_pred EcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccce
Q 006185 561 KLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK 619 (657)
Q Consensus 561 ~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~ 619 (657)
+++++ .++.++..... .+++|++|++++|.--...|..+..+ ++|++|++++|.
T Consensus 479 ~Ls~n-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~l~~N~ 532 (606)
T 3vq2_A 479 DLSKC-QLEQISWGVFD---TLHRLQLLNMSHNNLLFLDSSHYNQL-YSLSTLDCSFNR 532 (606)
T ss_dssp ECTTS-CCCEECTTTTT---TCTTCCEEECCSSCCSCEEGGGTTTC-TTCCEEECTTSC
T ss_pred ECCCC-cCCccChhhhc---ccccCCEEECCCCcCCCcCHHHccCC-CcCCEEECCCCc
Confidence 99998 56665424455 68999999999995444447666665 679999999996
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-34 Score=316.37 Aligned_cols=509 Identities=14% Similarity=0.078 Sum_probs=359.6
Q ss_pred CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEEeeC
Q 006185 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILDLSK 118 (657)
Q Consensus 41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~ 118 (657)
-++++.++..+..+|..+ .+++++|++++|.++.+ |..|+++++|++|++++|.... .|..|+++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 457888888888999865 35899999999999876 6789999999999999998444 468899999999999999
Q ss_pred CCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEE
Q 006185 119 SDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSL 197 (657)
Q Consensus 119 ~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L 197 (657)
|.++.+ |..++++++|++|++++| .+..++...++++++|++|++++|.+.. .....+..+++|+.|
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS-----------IKLPKGFPTEKLKVL 158 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCC-----------CCCCTTCCCTTCCEE
T ss_pred CcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccc-----------cCcccccCCcccCEE
Confidence 999865 678999999999999995 5666644448999999999999997642 222345558999999
Q ss_pred EeecCCCccCCCC--CCCCCcc--EEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHH-ccccE
Q 006185 198 HIDIPKGEIMPSD--MSLPNLT--SFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL-LRSEI 272 (657)
Q Consensus 198 ~l~~~~~~~~~~~--~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~-~~L~~ 272 (657)
++++|.+..++.. ..+++|+ .|++.++.... ..+..+....++.+++.++..+. ..+.... ..++.
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~ 229 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG------IEPGAFDSAVFQSLNFGGTQNLL---VIFKGLKNSTIQS 229 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE------ECTTTTTTCEEEEEECTTCSCHH---HHHHHTTTCEEEE
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCc------cChhHhhhccccccccCCchhHH---HHhhhccccchhh
Confidence 9999998766543 5678888 66666543221 12333444678888998886443 3333320 23444
Q ss_pred EEEeeccccccc-ccccccccc--ccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCC
Q 006185 273 LALIEVNDLENI-FSNLANDDF--NELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCL 349 (657)
Q Consensus 273 L~L~~~~~l~~~-~~~l~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 349 (657)
+.+..+...... ...-....+ .+|+.|+++++ .+..++.. .+..+++|++|+++++. ++.+. ...+.+
T Consensus 230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~lp---~~l~~l 300 (606)
T 3t6q_A 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSN----TFHCFSGLQELDLTATH-LSELP---SGLVGL 300 (606)
T ss_dssp EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTT----TTTTCTTCSEEECTTSC-CSCCC---SSCCSC
T ss_pred eechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHH----HhccccCCCEEeccCCc-cCCCC---hhhccc
Confidence 444443332211 111011112 27899999998 55544433 34568999999999985 43221 113478
Q ss_pred CCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCC
Q 006185 350 SNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGD 429 (657)
Q Consensus 350 ~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 429 (657)
++|++|++++| .++...|..+ ..+++|++|+++++.....+. +..+..+++|++|+++++. ++.+....
T Consensus 301 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 301 STLKKLVLSAN-KFENLCQISA-SNFPSLTHLSIKGNTKRLELG--------TGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp TTCCEEECTTC-CCSBGGGGCG-GGCTTCSEEECCSCSSCCBCC--------SSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred ccCCEEECccC-CcCcCchhhh-hccCcCCEEECCCCCcccccc--------hhhhhccCcCCEEECCCCc-cccccCcc
Confidence 99999999996 4555445443 689999999999975443331 2336789999999999975 55443223
Q ss_pred CcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccC-CCCCCCCCCccEEEEecCCCccee
Q 006185 430 TQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTST-SSPTPSLGNLVSITIRGCGKLRNL 508 (657)
Q Consensus 430 ~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~~L~~l 508 (657)
.....+++|++|++++| .+....|..+..+++|++|++.++. +.... +..+..+++|+.|++++|. ++..
T Consensus 370 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 440 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTR-------LKVKDAQSPFQNLHLLKVLNLSHSL-LDIS 440 (606)
T ss_dssp TTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCC-------EECCTTCCTTTTCTTCCEEECTTCC-CBTT
T ss_pred hhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCc-------CCCcccchhhhCcccCCEEECCCCc-cCCc
Confidence 34556899999999997 5677778899999999999998752 22222 2347789999999999986 4443
Q ss_pred cccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeecccccee
Q 006185 509 FTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEAL 588 (657)
Q Consensus 509 ~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L 588 (657)
.+ ..+..+++|++|++++|.--...+... .....+++|+.|++++| .++.++..... .+++|++|
T Consensus 441 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~----------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L 505 (606)
T 3t6q_A 441 SE-QLFDGLPALQHLNLQGNHFPKGNIQKT----------NSLQTLGRLEILVLSFC-DLSSIDQHAFT---SLKMMNHV 505 (606)
T ss_dssp CT-TTTTTCTTCCEEECTTCBCGGGEECSS----------CGGGGCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEE
T ss_pred CH-HHHhCCCCCCEEECCCCCCCccccccc----------hhhccCCCccEEECCCC-ccCccChhhhc---cccCCCEE
Confidence 23 335779999999999986322111111 12235899999999998 56666425555 68999999
Q ss_pred eeccCCCcceecCCCccccceeceeEeccce
Q 006185 589 QIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK 619 (657)
Q Consensus 589 ~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~ 619 (657)
+++++.--...|.....+ +.| .|++++|.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l-~~L-~L~L~~N~ 534 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHL-KGI-YLNLASNH 534 (606)
T ss_dssp ECCSSCCCGGGGGGGTTC-CSC-EEECCSSC
T ss_pred ECCCCccCcCChhHhCcc-ccc-EEECcCCc
Confidence 999985444455555555 567 89999886
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=315.74 Aligned_cols=497 Identities=19% Similarity=0.194 Sum_probs=300.6
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-c
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-S 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~ 80 (657)
+.+++++|. .-.+.+++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|++++|.++.++ .
T Consensus 16 ~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence 456777774 23467888888888888776533 7888888888888888777777888888888888888887655 6
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.|+++++|++|++++|.....+ ..++++++|++|++++|.++. +|..++++++|++|++++| .+..++...++.++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHH
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchh
Confidence 7888888888888888744444 358888888888888888874 6888888888888888884 45555544477777
Q ss_pred cC----cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc--cCCCC-CCCCCccEEEEEEcCccChh
Q 006185 158 KL----EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE--IMPSD-MSLPNLTSFSITIGEEDTLN 230 (657)
Q Consensus 158 ~L----~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~ 230 (657)
+| ++|++++|.+.. ..+..+... +|+.|++.++... .++.. ..+.+++...+.......
T Consensus 174 ~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~-- 239 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-- 239 (570)
T ss_dssp TCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--
T ss_pred ccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--
Confidence 77 788888876542 222333333 6888888776421 11111 334555544443221000
Q ss_pred hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHH--ccccEEEEeeccccccccccccccccccceEEEeecCCCce
Q 006185 231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLL--LRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMK 308 (657)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~ 308 (657)
...+..++.+....+ -.++.+.+.++..+.+..+.. ...+++|++|+++++ .+.
T Consensus 240 ----------------------~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~ 295 (570)
T 2z63_A 240 ----------------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIE 295 (570)
T ss_dssp ----------------------CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC-EEC
T ss_pred ----------------------chhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCc-cch
Confidence 000000000000000 235566666554443333322 134778888888877 444
Q ss_pred EEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccccc
Q 006185 309 CLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCEL 388 (657)
Q Consensus 309 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~ 388 (657)
.++.... .+ +|+.|++++|. + ..+|...+++|++|+++++..... .+. ..+++|++|+++++.
T Consensus 296 ~l~~~~~-----~~-~L~~L~l~~n~-~-----~~l~~~~l~~L~~L~l~~n~~~~~-~~~---~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 296 RVKDFSY-----NF-GWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSNKGGNA-FSE---VDLPSLEFLDLSRNG- 358 (570)
T ss_dssp SCCBCCS-----CC-CCSEEEEESCB-C-----SSCCBCBCSSCCEEEEESCBSCCB-CCC---CBCTTCCEEECCSSC-
T ss_pred hhhhhhc-----cC-CccEEeeccCc-c-----cccCcccccccCEEeCcCCccccc-ccc---ccCCCCCEEeCcCCc-
Confidence 4443322 24 77888887775 1 244556677888888887654333 332 356777777777753
Q ss_pred ceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhh
Q 006185 389 LVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVL 468 (657)
Q Consensus 389 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l 468 (657)
++.+.. .+..+..+++|+.|++++|. ++.++. ....+++|++|++++|. +....+
T Consensus 359 l~~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~-------------- 413 (570)
T 2z63_A 359 LSFKGC------CSQSDFGTTSLKYLDLSFNG-VITMSS---NFLGLEQLEHLDFQHSN-LKQMSE-------------- 413 (570)
T ss_dssp CBEEEE------EEHHHHTCSCCCEEECCSCS-EEEEEE---EEETCTTCCEEECTTSE-EESCTT--------------
T ss_pred cCcccc------ccccccccCccCEEECCCCc-cccccc---cccccCCCCEEEccCCc-cccccc--------------
Confidence 222100 02334567777777777754 343321 13456777777777753 222211
Q ss_pred hcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCc-ceeeeCcCceecccCC
Q 006185 469 YRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTL-QEIIMDDEGEVGLQGA 547 (657)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l-~~~~~~~~~~~~l~~~ 547 (657)
...+..+++|+.|++++|. +....+ ..+..+++|++|++++|.-. ..++
T Consensus 414 ----------------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p------------ 463 (570)
T 2z63_A 414 ----------------FSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP------------ 463 (570)
T ss_dssp ----------------SCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEEC------------
T ss_pred ----------------hhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccch------------
Confidence 1234466777777777764 333322 23456777777777777522 1222
Q ss_pred CcceEeccccCeeEcCcCCCcccc-ccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185 548 STKKITFPSLFSIKLCDLGSLTCF-SSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY 620 (657)
Q Consensus 548 ~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~ 620 (657)
.....+++|+.|++++| +++.+ | .... .+++|++|++++| +++.+|.. +..+ ++|++|++++++.
T Consensus 464 -~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~~l-~~L~~L~l~~N~~ 530 (570)
T 2z63_A 464 -DIFTELRNLTFLDLSQC-QLEQLSP-TAFN---SLSSLQVLNMASN-QLKSVPDGIFDRL-TSLQKIWLHTNPW 530 (570)
T ss_dssp -SCCTTCTTCCEEECTTS-CCCEECT-TTTT---TCTTCCEEECCSS-CCSCCCTTTTTTC-TTCCEEECCSSCB
T ss_pred -hhhhcccCCCEEECCCC-ccccCCh-hhhh---cccCCCEEeCCCC-cCCCCCHHHhhcc-cCCcEEEecCCcc
Confidence 11124677888888876 45555 4 4544 4678888888776 56666543 3333 5678888877763
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-35 Score=319.81 Aligned_cols=477 Identities=19% Similarity=0.216 Sum_probs=282.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+++++++|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.++.++..
T Consensus 14 ~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 14 SRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 456666664 223677777777777776543 23 677777777777777766655567777777777777777666543
Q ss_pred -ccCCCCCcEEEccCCCCC--CCCcccCCCCCCCEEEeeCCC-CCccc-ccccCCCCCCEEEccCCCCCCCCchhHhhcC
Q 006185 82 -LSFLSNLRTLRLDYCNHL--PDLSLIGELSGLEILDLSKSD-VNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRL 156 (657)
Q Consensus 82 -~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l 156 (657)
|+++++|++|++++|... ..|..++++++|++|++++|. ++.+| ..+.++++|++|++++|...+..|.. ++++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l 171 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI 171 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence 777777777777777633 234667777777777777776 55565 35777777777777775433334444 6777
Q ss_pred ccCcEEEcccCccccccccccccccccchh-hhcCCCCccEEEeecCCCccCCC-----CCCCCCccEEEEEEcCccChh
Q 006185 157 RKLEELYMSHSFCHWQFESEEDTRSNAKFI-ELGALSRLTSLHIDIPKGEIMPS-----DMSLPNLTSFSITIGEEDTLN 230 (657)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~ 230 (657)
++|++|+++++... ..+. .+..+++|+.|++++|.+..++. ...+++|+.|++.++.
T Consensus 172 ~~L~~L~l~~n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~----- 234 (549)
T 2z81_A 172 RDIHHLTLHLSESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV----- 234 (549)
T ss_dssp SEEEEEEEECSBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-----
T ss_pred ccCceEecccCccc------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-----
Confidence 77777777666432 1111 12456777777777776544321 1334566666665431
Q ss_pred hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEE
Q 006185 231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCL 310 (657)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 310 (657)
-....+..+...+ ..+++|+.+++.+| .+..+
T Consensus 235 ------------------------l~~~~~~~l~~~~-----------------------~~~~~L~~l~l~~~-~~~~~ 266 (549)
T 2z81_A 235 ------------------------LTDESFNELLKLL-----------------------RYILELSEVEFDDC-TLNGL 266 (549)
T ss_dssp ------------------------EEHHHHHHHHGGG-----------------------GGCTTCCEEEEESC-EEECC
T ss_pred ------------------------cchhHHHHHHHHh-----------------------hhhccccccccccc-ccccc
Confidence 0011111111110 12334444444444 11111
Q ss_pred eecc--ccccccccccccEEeccccccccccc-cccCC--CCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcc
Q 006185 311 LNSL--ERTQRVTLRKLEWLFIRENQNFVEIC-HGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVES 385 (657)
Q Consensus 311 ~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~ 385 (657)
.... .......+++|+.|.+.++. +..+. ....+ ...+++|++|+++++. ++. +|..+++.+++|++|++++
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~-ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSK-VFL-VPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCC-CCHHHHHHCTTCCEEECCS
T ss_pred ccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCc-ccc-CCHHHHhcCccccEEEccC
Confidence 0000 00012235566666665543 11100 00000 0134678899998854 554 6666656788999999988
Q ss_pred cccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhh
Q 006185 386 CELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEE 465 (657)
Q Consensus 386 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~ 465 (657)
+.-...++.. +..+..+++|+.|+++++ .++.++..+.....+++|++|++++| +++.+
T Consensus 344 N~l~~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l------------- 402 (549)
T 2z81_A 344 NLMVEEYLKN------SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM------------- 402 (549)
T ss_dssp SCCCHHHHHH------HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-------------
T ss_pred Cccccccccc------hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC-------------
Confidence 6432211000 112456788899998886 45554211122445788888888887 45544
Q ss_pred hhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceeccc
Q 006185 466 MVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQ 545 (657)
Q Consensus 466 l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~ 545 (657)
|..+..+++|+.|++++|. ++.++. ..+++|++|++++|. ++.++
T Consensus 403 -------------------p~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N~-l~~~~---------- 447 (549)
T 2z81_A 403 -------------------PDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNNN-LDSFS---------- 447 (549)
T ss_dssp -------------------CSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSSC-CSCCC----------
T ss_pred -------------------ChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCCC-hhhhc----------
Confidence 3334466788888888875 554421 124688899998884 54332
Q ss_pred CCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185 546 GASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY 620 (657)
Q Consensus 546 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~ 620 (657)
..+++|+.|+++++ +++.+| .. . .+++|++|+++++ .++.+|.. +..+ ++|+.|++++|+.
T Consensus 448 ------~~l~~L~~L~Ls~N-~l~~ip-~~-~---~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~L~l~~N~~ 509 (549)
T 2z81_A 448 ------LFLPRLQELYISRN-KLKTLP-DA-S---LFPVLLVMKISRN-QLKSVPDGIFDRL-TSLQKIWLHTNPW 509 (549)
T ss_dssp ------CCCTTCCEEECCSS-CCSSCC-CG-G---GCTTCCEEECCSS-CCCCCCTTGGGGC-TTCCEEECCSSCB
T ss_pred ------ccCChhcEEECCCC-ccCcCC-Cc-c---cCccCCEEecCCC-ccCCcCHHHHhcC-cccCEEEecCCCc
Confidence 14788999999986 678887 53 2 3689999999987 67777654 4444 6789999988884
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=297.44 Aligned_cols=478 Identities=17% Similarity=0.135 Sum_probs=314.6
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~ 96 (657)
..++++.++..++++|.... +++++|++++|.+..++...|.++++|++|++++|+++.++ ..|+++++|++|++++|
T Consensus 8 ~~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCcEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34678888888999997553 57999999999999888777899999999999999998764 67999999999999999
Q ss_pred CCCCC-CcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcccccc
Q 006185 97 NHLPD-LSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 97 ~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
..... +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~-- 163 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS-- 163 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE--
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce--
Confidence 84444 4789999999999999999998876 59999999999999964433 36776 8999999999999997642
Q ss_pred ccccccccccchhhhcCCCCc----cEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185 174 ESEEDTRSNAKFIELGALSRL----TSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 248 (657)
..+..++.+++| +.|++++|.+..++.. ....+|+.|++.++..
T Consensus 164 ---------~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~---------------------- 212 (570)
T 2z63_A 164 ---------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD---------------------- 212 (570)
T ss_dssp ---------ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS----------------------
T ss_pred ---------ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccc----------------------
Confidence 334455666666 7899999988666554 3344788888876411
Q ss_pred EeecccchhhhHHHHHHHHccccEEEEeec--cc---cccccccccccccc--cceEEEeecCCCceEEeeccccccccc
Q 006185 249 GLSQDMRISALHSWIKNLLLRSEILALIEV--ND---LENIFSNLANDDFN--ELMFLYIFGCNEMKCLLNSLERTQRVT 321 (657)
Q Consensus 249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~--~~---l~~~~~~l~~~~~~--~L~~L~l~~~~~l~~~~~~~~~~~~~~ 321 (657)
....++..+..+ .+++...+... .. +..+. ......++ .++.+.+.++..+..... .....
T Consensus 213 ------~~~~~~~~~~~l-~~l~~~~l~~~~~~~~~~l~~~~-~~~~~~l~~l~l~~l~l~~~~~~~~~~~----~~~~~ 280 (570)
T 2z63_A 213 ------SLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDII----DLFNC 280 (570)
T ss_dssp ------CTTHHHHHHHTT-TTCEEEEEEEEECCCCSSCEECC-TTTTGGGGGSEEEEEEEEETTEEESCST----TTTGG
T ss_pred ------cccchhhhhcCc-cccceeeeccccccCchhhhhcc-hhhhccccccchhhhhhhcchhhhhhch----hhhcC
Confidence 111233333322 44544444321 11 11111 10111122 234455555422221111 13345
Q ss_pred cccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185 322 LRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN 399 (657)
Q Consensus 322 ~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 399 (657)
+++|+.|+++++. ++. +| ...+ +|++|++++|.. .. +|. ..+++|++|++.++......
T Consensus 281 l~~L~~L~l~~~~-l~~-----l~~~~~~~-~L~~L~l~~n~~-~~-l~~---~~l~~L~~L~l~~n~~~~~~------- 341 (570)
T 2z63_A 281 LTNVSSFSLVSVT-IER-----VKDFSYNF-GWQHLELVNCKF-GQ-FPT---LKLKSLKRLTFTSNKGGNAF------- 341 (570)
T ss_dssp GTTCSEEEEESCE-ECS-----CCBCCSCC-CCSEEEEESCBC-SS-CCB---CBCSSCCEEEEESCBSCCBC-------
T ss_pred cCcccEEEecCcc-chh-----hhhhhccC-CccEEeeccCcc-cc-cCc---ccccccCEEeCcCCcccccc-------
Confidence 6777777777764 221 22 1234 777777777543 33 333 25677777777775432211
Q ss_pred ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185 400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH 479 (657)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~ 479 (657)
+ ...+++|+.|+++++. ++.+...+.....+++|++|++++|. ++.+++
T Consensus 342 --~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------------------------- 390 (570)
T 2z63_A 342 --S--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS------------------------- 390 (570)
T ss_dssp --C--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEE-------------------------
T ss_pred --c--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccc-------------------------
Confidence 1 1456777777777653 33321111123346667777777653 333211
Q ss_pred ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185 480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS 559 (657)
Q Consensus 480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 559 (657)
.+..+++|++|++++|. +....+...+..+++|++|++++|. +..... .....+++|+.
T Consensus 391 -------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~ 449 (570)
T 2z63_A 391 -------NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN------------GIFNGLSSLEV 449 (570)
T ss_dssp -------EEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT------------TTTTTCTTCCE
T ss_pred -------cccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch------------hhhhcCCcCcE
Confidence 13367889999998875 4444444456789999999999996 332211 11225899999
Q ss_pred eEcCcCCCc-cccccCCCcceeeccccceeeeccCCCccee-cCCCccccceeceeEeccce
Q 006185 560 IKLCDLGSL-TCFSSSGLHATVEFLALEALQIIDCPGMKTF-GYGNQLTPKLLKGVEFGYCK 619 (657)
Q Consensus 560 L~l~~c~~l-~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~l-p~~~~~l~~~L~~L~i~~C~ 619 (657)
|++++|.-- ..+| .... .+++|++|++++|. ++.+ |..+..+ ++|++|++++|.
T Consensus 450 L~l~~n~l~~~~~p-~~~~---~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~ 505 (570)
T 2z63_A 450 LKMAGNSFQENFLP-DIFT---ELRNLTFLDLSQCQ-LEQLSPTAFNSL-SSLQVLNMASNQ 505 (570)
T ss_dssp EECTTCEEGGGEEC-SCCT---TCTTCCEEECTTSC-CCEECTTTTTTC-TTCCEEECCSSC
T ss_pred EECcCCcCccccch-hhhh---cccCCCEEECCCCc-cccCChhhhhcc-cCCCEEeCCCCc
Confidence 999998643 3577 6666 68999999999994 5555 6666655 679999999985
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=307.97 Aligned_cols=515 Identities=18% Similarity=0.189 Sum_probs=309.8
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCC-
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP- 78 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l- 78 (657)
++.+++++|. ..+++++|++++|.++.++. .+ .+++|++|++++|... .+++..|.++++|++|+|++|.+..+
T Consensus 12 s~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 12 RFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp SCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred cCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 3567889997 67999999999999997754 44 8999999999999554 77666789999999999999999865
Q ss_pred CccccCCCCCcEEEccCCCCCC-CCc--ccCCCCCCCEEEeeCCCCCcc--cccccCCCCCCEEEccCCCCCCCCchhHh
Q 006185 79 PSSLSFLSNLRTLRLDYCNHLP-DLS--LIGELSGLEILDLSKSDVNEI--PVSFGRLSHLRLLDLTDCYNLELIPPGVL 153 (657)
Q Consensus 79 p~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~c~~~~~~~~~~~ 153 (657)
|..|+++++|++|++++|.... .|. .++++++|++|++++|.++.+ +..++++++|++|++++|......+.. +
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-L 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-G
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-c
Confidence 8899999999999999998443 344 499999999999999999865 356999999999999996544444444 7
Q ss_pred hcC--ccCcEEEcccCccccccccccccccccchhhhcCCC------CccEEEeecCCCc-cCCCC----CCCCCccEEE
Q 006185 154 SRL--RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS------RLTSLHIDIPKGE-IMPSD----MSLPNLTSFS 220 (657)
Q Consensus 154 ~~l--~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~----~~l~~L~~L~ 220 (657)
..+ ++|+.|++++|.+.. ..+..++.+. .|+.|++++|... ..+.. .....++.+.
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~-----------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYS-----------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCC-----------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred ccccCCccceEECCCCcccc-----------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 776 899999999987643 2333344433 4999999998652 22221 3345677777
Q ss_pred EEEcC---ccC---hhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccc
Q 006185 221 ITIGE---EDT---LNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFN 294 (657)
Q Consensus 221 l~~~~---~~~---~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~ 294 (657)
+..+. +.. ...........+..+.++.++++++.-....|..+. .+++|+.|+++++ .+....+. ....++
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~~~~-~~~~l~ 314 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYN-KINKIADE-AFYGLD 314 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESC-CCCEECTT-TTTTCS
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCC-cCCCCChH-HhcCCC
Confidence 65211 000 011111111222335677777776632221122222 2367777777766 33333332 123467
Q ss_pred cceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHh
Q 006185 295 ELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQS 374 (657)
Q Consensus 295 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~ 374 (657)
+|++|++++| .+..+... ....+++|+.|+++++. ++.+.. .....+++|+.|+++++ .++.+ + .
T Consensus 315 ~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~Ls~N-~l~~i-~-----~ 379 (844)
T 3j0a_A 315 NLQVLNLSYN-LLGELYSS----NFYGLPKVAYIDLQKNH-IAIIQD--QTFKFLEKLQTLDLRDN-ALTTI-H-----F 379 (844)
T ss_dssp SCCEEEEESC-CCSCCCSC----SCSSCTTCCEEECCSCC-CCCCCS--SCSCSCCCCCEEEEETC-CSCCC-S-----S
T ss_pred CCCEEECCCC-CCCccCHH----HhcCCCCCCEEECCCCC-CCccCh--hhhcCCCCCCEEECCCC-CCCcc-c-----C
Confidence 7777777777 34333221 23346777777777764 322111 11235677777777774 34432 1 2
Q ss_pred cccCcEEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccc
Q 006185 375 FQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFP 454 (657)
Q Consensus 375 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~ 454 (657)
+++|++|.++++ .++.+ +. ...+++.|+++++ .++.+.. ......+++|++|+++++. ++...+
T Consensus 380 ~~~L~~L~l~~N-~l~~l---------~~---~~~~l~~L~ls~N-~l~~l~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~ 443 (844)
T 3j0a_A 380 IPSIPDIFLSGN-KLVTL---------PK---INLTANLIHLSEN-RLENLDI-LYFLLRVPHLQILILNQNR-FSSCSG 443 (844)
T ss_dssp CCSCSEEEEESC-CCCCC---------CC---CCTTCCEEECCSC-CCCSSTT-HHHHTTCTTCCEEEEESCC-CCCCCS
T ss_pred CCCcchhccCCC-Ccccc---------cc---cccccceeecccC-ccccCch-hhhhhcCCccceeeCCCCc-cccccc
Confidence 567777777764 22222 11 1345566666553 2333211 0011246677777777753 333322
Q ss_pred -cccccccchhhhhhhcccccceeeccc--ccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCc
Q 006185 455 -ANLGKKAAAEEMVLYRNRRYQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTL 531 (657)
Q Consensus 455 -~~l~~~~~L~~l~l~~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 531 (657)
..+..+++|+.|+++++.-- ..+ ...+..+..+++|+.|+++++ +++.+.+. .+..+++|++|+++++ .+
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~----~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l 516 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPG-VFSHLTALRGLSLNSN-RL 516 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCS----SSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTT-SSSSCCSCSEEEEESC-CC
T ss_pred ccccccCCccccccCCCCccc----cccccccchhhhcCcccccEEECCCC-cccccChh-HccchhhhheeECCCC-CC
Confidence 23444666666666653110 111 111234556667777777665 45554332 3356677777777766 34
Q ss_pred ceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccC
Q 006185 532 QEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDC 593 (657)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C 593 (657)
+.++.. . ..++|+.|++++. +++..+ .. .+++|+.|++.+.
T Consensus 517 ~~l~~~--~------------~~~~L~~L~Ls~N-~l~~~~-~~-----~~~~L~~l~l~~N 557 (844)
T 3j0a_A 517 TVLSHN--D------------LPANLEILDISRN-QLLAPN-PD-----VFVSLSVLDITHN 557 (844)
T ss_dssp SSCCCC--C------------CCSCCCEEEEEEE-CCCCCC-SC-----CCSSCCEEEEEEE
T ss_pred CccChh--h------------hhccccEEECCCC-cCCCCC-hh-----HhCCcCEEEecCC
Confidence 444310 0 1256777777763 455544 22 2356667766653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.3e-32 Score=293.94 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=168.2
Q ss_pred CCCCCCCC--CCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC--
Q 006185 4 GVELKDWP--SINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-- 77 (657)
Q Consensus 4 ~~~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-- 77 (657)
++.+.+++ .+..+++|++|++++|.++.++.. + .+++|++|++++|.+..+++..|+++++|++|++++|.++.
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 44566653 588999999999999999987753 4 89999999999999999998888999999999999999974
Q ss_pred CCccccCCCCCcEEEccCCCCCC-CC-cccCCCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhh
Q 006185 78 PPSSLSFLSNLRTLRLDYCNHLP-DL-SLIGELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLS 154 (657)
Q Consensus 78 lp~~~~~l~~L~~L~l~~~~~~~-~~-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~ 154 (657)
.|..++++++|++|++++|.... .| ..++++++|++|++++|.++ ..|..++++++|++|+++++ ....+|...+.
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFAD 193 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHH
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHh
Confidence 57889999999999999998444 33 68999999999999999998 47888999999999999994 56677776567
Q ss_pred cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCcc-----CCCC-CCCCCccEEEEEEc
Q 006185 155 RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI-----MPSD-MSLPNLTSFSITIG 224 (657)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~-~~l~~L~~L~l~~~ 224 (657)
.+++|++|++++|.+..... ........+++|+.|++.++.+.. ++.. ..+++|+.+++.++
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQF--------SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp STTTBSEEEEESCBCTTCCC--------CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred hcccccEEEccCCccccccc--------cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 89999999999986542100 011223457899999999886521 1111 34566777777654
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=308.35 Aligned_cols=521 Identities=17% Similarity=0.120 Sum_probs=342.7
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC-CCC-CccccCCCCCcEEEccCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM-VSP-PSSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~l-p~~~~~l~~L~~L~l~~~~ 97 (657)
+..+.+++.++.+|. ..+++++|++++|.+..+++..|.++++|++|++++|.. ..+ |..|.++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 578899999999998 567999999999999977766789999999999999954 556 7889999999999999999
Q ss_pred CCC-CCcccCCCCCCCEEEeeCCCCCc-cccc--ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185 98 HLP-DLSLIGELSGLEILDLSKSDVNE-IPVS--FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 98 ~~~-~~~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
... .|..++++++|++|++++|.++. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-- 162 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-- 162 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--
Confidence 544 47899999999999999999984 5655 99999999999999654444343448999999999999997643
Q ss_pred ccccccccccchhhhcCC--CCccEEEeecCCCcc-CCCC-CCCC------CccEEEEEEcCccChhhHHHHHhhccccc
Q 006185 174 ESEEDTRSNAKFIELGAL--SRLTSLHIDIPKGEI-MPSD-MSLP------NLTSFSITIGEEDTLNDFIELFLENFNKR 243 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~-~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 243 (657)
..+..+..+ ++|+.|+++.|.... .+.. ..++ .|+.|+++++.-.. .....+...+...
T Consensus 163 ---------~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 163 ---------VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV--DITGNFSNAISKS 231 (844)
T ss_dssp ---------CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST--TTTSGGGGTSCSC
T ss_pred ---------eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch--hHHHHHHhhcCcc
Confidence 334445555 799999999988643 2222 2233 38999998663111 1111122233345
Q ss_pred CcceEEeecc--------cchhhhHH-HHHHH-HccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeec
Q 006185 244 CSRAMGLSQD--------MRISALHS-WIKNL-LLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNS 313 (657)
Q Consensus 244 ~l~~l~l~~~--------~~~~~l~~-~~~~~-~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 313 (657)
.+..+.+..+ ..+..... .+... .++|+.|+++++. +....+.. ...+++|+.|++++| .+..++..
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 308 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRV-FETLKDLKVLNLAYN-KINKIADE 308 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCC-SSSCCCCCEEEEESC-CCCEECTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhh-hhcCCCCCEEECCCC-cCCCCChH
Confidence 5566655421 11111111 11111 1578888887763 33333321 235788888888888 55554433
Q ss_pred cccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeee
Q 006185 314 LERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVF 393 (657)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~ 393 (657)
.+..+++|+.|+++++. ++.+.. .....+++|+.|+++++ .+..+.+.. +..+++|++|+++++. ++.+
T Consensus 309 ----~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i- 377 (844)
T 3j0a_A 309 ----AFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDNA-LTTI- 377 (844)
T ss_dssp ----TTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETCC-SCCC-
T ss_pred ----HhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCCC-CCcc-
Confidence 23357788888888775 222111 12336778888888885 455544333 2567888888888742 3222
Q ss_pred ecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCccccccc-ccccccccchhhhhhhccc
Q 006185 394 EIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVF-PANLGKKAAAEEMVLYRNR 472 (657)
Q Consensus 394 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~-~~~l~~~~~L~~l~l~~~~ 472 (657)
..+++|+.|.++++ .++.++.. ..+++.|+++++ +++.+. +..+..+++|+.|+++++.
T Consensus 378 ------------~~~~~L~~L~l~~N-~l~~l~~~------~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 378 ------------HFIPSIPDIFLSGN-KLVTLPKI------NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp ------------SSCCSCSEEEEESC-CCCCCCCC------CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred ------------cCCCCcchhccCCC-Cccccccc------ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc
Confidence 33778888888875 35554321 467788888875 444432 2234567788888887642
Q ss_pred ccceeecccccC-CCCCCCCCCccEEEEecCCCcceecc----cchhhcccCCcEEEEecCCCcceeeeCcCceecccCC
Q 006185 473 RYQIHIHATTST-SSPTPSLGNLVSITIRGCGKLRNLFT----TSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGA 547 (657)
Q Consensus 473 ~l~~~~~~~~~~-~~~~~~~~~L~~L~i~~c~~L~~l~~----~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~ 547 (657)
+.... ......+++|+.|+++++. ++...+ ...+..+++|++|+++++ .++.++.
T Consensus 438 -------l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----------- 497 (844)
T 3j0a_A 438 -------FSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP----------- 497 (844)
T ss_dssp -------CCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-----------
T ss_pred -------ccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCC-cccccCh-----------
Confidence 11111 1123346788888888864 332211 122456788888888887 3554432
Q ss_pred CcceEeccccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEecccee
Q 006185 548 STKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCKY 620 (657)
Q Consensus 548 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~~ 620 (657)
.....+++|+.|+++++ +++.++ .+.. .++|+.|+++++ +++.++... + .+|+.|++.+.|.
T Consensus 498 -~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~----~~~L~~L~Ls~N-~l~~~~~~~--~-~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 498 -GVFSHLTALRGLSLNSN-RLTVLS-HNDL----PANLEILDISRN-QLLAPNPDV--F-VSLSVLDITHNKF 559 (844)
T ss_dssp -TSSSSCCSCSEEEEESC-CCSSCC-CCCC----CSCCCEEEEEEE-CCCCCCSCC--C-SSCCEEEEEEECC
T ss_pred -hHccchhhhheeECCCC-CCCccC-hhhh----hccccEEECCCC-cCCCCChhH--h-CCcCEEEecCCCc
Confidence 12235789999999985 788887 5544 289999999986 566555433 3 4688999987663
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-30 Score=287.24 Aligned_cols=532 Identities=15% Similarity=0.116 Sum_probs=309.7
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 98 (657)
++.+.++.++++||..+. +++++|++++|.+..+++..|.++++|++|+|++|+++.+|. +|.++++|++|+|++|..
T Consensus 34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 345666666777776442 367777777777777776667777777777777777776643 567777777777777774
Q ss_pred CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCC--CchhHhhcCccCcEEEcccCccccccc
Q 006185 99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLEL--IPPGVLSRLRKLEELYMSHSFCHWQFE 174 (657)
Q Consensus 99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (657)
...| ..|+++++|++|++++|.++.+|.. ++++++|++|++++|. +.. .|.. ++.+++|++|++++|.+.....
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcccccccc
Confidence 4444 4567777777777777777766653 6777777777777743 332 3333 6677777777777775532100
Q ss_pred cccccccccchhhhcCCC-CccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeec
Q 006185 175 SEEDTRSNAKFIELGALS-RLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQ 252 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 252 (657)
.....+..++ ....++++.+.+..++.. .....+..+.+..+.. .. .........+.......+.+..
T Consensus 191 --------~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~-~~-~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 191 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD-SL-NVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp --------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS-SH-HHHHHHHHTTTTCEEEEEEEEC
T ss_pred --------ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc-cc-cccchhhcCCcccccccccccc
Confidence 1122223322 223556666665555443 3333445555554311 10 1111111111111111111111
Q ss_pred c---cchhhhHHHHHHHHccccEEEEeeccc--cccccccccccccccceEEEeecCCCceEEeeccccccccccccccE
Q 006185 253 D---MRISALHSWIKNLLLRSEILALIEVND--LENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW 327 (657)
Q Consensus 253 ~---~~~~~l~~~~~~~~~~L~~L~L~~~~~--l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 327 (657)
. ..+.............+....+..... ....... ....+.+++.+.+.++ .+..+.+ .....+|+.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~-~~~~~~~------~~~~~~L~~ 332 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSV-TIERVKD------FSYNFGWQH 332 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESC-EEEECGG------GGSCCCCSE
T ss_pred cccccccccccccccccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccc-ccccccc------cccchhhhh
Confidence 1 011100000011113344444433211 1011111 1134667777777776 3333222 223567888
Q ss_pred EeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccccccc
Q 006185 328 LFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETEL 407 (657)
Q Consensus 328 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 407 (657)
|++.++. ...++...++.|+.+.+.+... ..... . ..+++|+.+++++... ..... .+.....
T Consensus 333 L~l~~~~------~~~~~~~~l~~L~~l~l~~n~~-~~~~~-~--~~l~~L~~L~ls~n~l-~~~~~------~~~~~~~ 395 (635)
T 4g8a_A 333 LELVNCK------FGQFPTLKLKSLKRLTFTSNKG-GNAFS-E--VDLPSLEFLDLSRNGL-SFKGC------CSQSDFG 395 (635)
T ss_dssp EEEESCE------ESSCCCCBCTTCCEEEEESCCS-CCBCC-C--CBCTTCCEEECCSSCC-BEEEE------CCHHHHS
T ss_pred hhccccc------ccCcCcccchhhhhcccccccC-CCCcc-c--ccccccccchhhcccc-ccccc------cccchhh
Confidence 8888775 2233445678888888887543 22222 1 2578888888877432 11110 1233446
Q ss_pred CCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCC
Q 006185 408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSP 487 (657)
Q Consensus 408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~ 487 (657)
..+|+.+++..+.... + ......+++|+.+++.++.......+..+..+++++.++++.+ .+....+..
T Consensus 396 ~~~L~~L~~~~~~~~~-~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-------~l~~~~~~~ 464 (635)
T 4g8a_A 396 TISLKYLDLSFNGVIT-M---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------HTRVAFNGI 464 (635)
T ss_dssp CSCCCEEECCSCSEEE-E---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-------CCEECCTTT
T ss_pred hhhhhhhhcccccccc-c---cccccccccccchhhhhcccccccccccccccccccccccccc-------ccccccccc
Confidence 6788888887764322 2 2223457888888888877666666667777788877777753 222233455
Q ss_pred CCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCC
Q 006185 488 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGS 567 (657)
Q Consensus 488 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 567 (657)
+..+++|+.|+++++.......+. .+..+++|++|++++|. ++.++. .....+++|+.|+++++ +
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~------------~~f~~l~~L~~L~Ls~N-~ 529 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP------------TAFNSLSSLQVLNMSHN-N 529 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT------------TTTTTCTTCCEEECTTS-C
T ss_pred cccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh------------HHHcCCCCCCEEECCCC-c
Confidence 667899999999998866655343 45789999999999984 666642 12225889999999995 7
Q ss_pred ccccccCCCcceeeccccceeeeccCCCcceec-CCCccccceeceeEeccce
Q 006185 568 LTCFSSSGLHATVEFLALEALQIIDCPGMKTFG-YGNQLTPKLLKGVEFGYCK 619 (657)
Q Consensus 568 l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp-~~~~~l~~~L~~L~i~~C~ 619 (657)
++.++..... .+++|+.|+++++ +++.++ ..+..+|++|+.|+++++|
T Consensus 530 l~~l~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 530 FFSLDTFPYK---CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CCBCCCGGGT---TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCChhHHh---CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8887623333 5799999999997 566554 5555677889999998776
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=276.48 Aligned_cols=460 Identities=16% Similarity=0.113 Sum_probs=306.1
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 98 (657)
++|++++|.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|+++.+ |..|+++++|++|++++|..
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 689999999999998766 8999999999999988877789999999999999999876 77999999999999999985
Q ss_pred CCCCcccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC--cEEEcccCccccccc
Q 006185 99 LPDLSLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL--EELYMSHSFCHWQFE 174 (657)
Q Consensus 99 ~~~~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L--~~L~l~~~~~~~~~~ 174 (657)
...|.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.+.. .
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~--~ 153 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG--E 153 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT--S
T ss_pred eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc--c
Confidence 545554 89999999999999985 67899999999999999954 443 227788888 999999986511 1
Q ss_pred cccccccccchhhhcCCCC-ccEEEeecCCC-ccCCCC--CCCCCccEEEEEEcC-ccChhhHHHHHhhcccccCcceEE
Q 006185 175 SEEDTRSNAKFIELGALSR-LTSLHIDIPKG-EIMPSD--MSLPNLTSFSITIGE-EDTLNDFIELFLENFNKRCSRAMG 249 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~-~~~~~~--~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l~ 249 (657)
+ ..+..+..+.. .-.+++.++.. +.++.. ..+++|+.+++.++. ...+..+.+.++.-...+.++.++
T Consensus 154 ~-------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 154 K-------EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp S-------CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred c-------cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 1 44555555553 22344555554 223332 567889999998763 122334555555333448888888
Q ss_pred eecccchhhhHHHHHHH--HccccEEEEeeccccc-ccccccc---ccccccceEEEeecCCCceEEeeccccccccccc
Q 006185 250 LSQDMRISALHSWIKNL--LLRSEILALIEVNDLE-NIFSNLA---NDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR 323 (657)
Q Consensus 250 l~~~~~~~~l~~~~~~~--~~~L~~L~L~~~~~l~-~~~~~l~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 323 (657)
+..+.--...+..+... .++|+.|+++++. +. ..+..+. ...+++|+.++++++. + .++..... ....-.
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~~~~-~~~~~~ 302 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQSYIY-EIFSNM 302 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTHHHH-HHHHTC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccc-e-ecchhhhh-cccccC
Confidence 88763322222222211 2589999998884 33 2222220 1357888888888883 3 23211000 000115
Q ss_pred cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccc
Q 006185 324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKE 403 (657)
Q Consensus 324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 403 (657)
+|+.|+++++. +.. ....+.+++|++|++++|. +++..|..+ ..+++|++|+++++. ++.+. ..+.
T Consensus 303 ~L~~L~l~~n~-l~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~------~~~~ 368 (520)
T 2z7x_B 303 NIKNFTVSGTR-MVH----MLCPSKISPFLHLDFSNNL-LTDTVFENC-GHLTELETLILQMNQ-LKELS------KIAE 368 (520)
T ss_dssp CCSEEEEESSC-CCC----CCCCSSCCCCCEEECCSSC-CCTTTTTTC-CCCSSCCEEECCSSC-CCBHH------HHHH
T ss_pred ceeEEEcCCCc-ccc----ccchhhCCcccEEEeECCc-cChhhhhhh-ccCCCCCEEEccCCc-cCccc------cchH
Confidence 68888888875 221 1111467888899988864 444445443 578888888888853 22210 0134
Q ss_pred ccccCCcccEEecCCCcCccc-ccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccc
Q 006185 404 ETELFSSLEKLTLIDLPRMTD-IWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATT 482 (657)
Q Consensus 404 ~~~~~~~L~~L~l~~c~~L~~-l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~ 482 (657)
.+..+++|+.|+++++. ++. ++.. ....+++|++|++++|. ++...|..
T Consensus 369 ~~~~l~~L~~L~Ls~N~-l~~~l~~~--~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------------- 418 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNS-VSYDEKKG--DCSWTKSLLSLNMSSNI-LTDTIFRC-------------------------- 418 (520)
T ss_dssp HHTTCTTCCEEECCSSC-CBCCGGGC--SCCCCTTCCEEECCSSC-CCGGGGGS--------------------------
T ss_pred HHhhCCCCCEEECCCCc-CCcccccc--hhccCccCCEEECcCCC-CCcchhhh--------------------------
Confidence 45678888888888865 443 4322 13346788888888874 32221211
Q ss_pred cCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEc
Q 006185 483 STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKL 562 (657)
Q Consensus 483 ~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l 562 (657)
+ .++|+.|++++| +++.+ +..+ ..+++|++|++++|. ++.++.. ....+++|+.|++
T Consensus 419 -----l--~~~L~~L~Ls~N-~l~~i-p~~~-~~l~~L~~L~L~~N~-l~~l~~~------------~~~~l~~L~~L~l 475 (520)
T 2z7x_B 419 -----L--PPRIKVLDLHSN-KIKSI-PKQV-VKLEALQELNVASNQ-LKSVPDG------------IFDRLTSLQKIWL 475 (520)
T ss_dssp -----C--CTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEEC
T ss_pred -----h--cccCCEEECCCC-ccccc-chhh-hcCCCCCEEECCCCc-CCccCHH------------HhccCCcccEEEC
Confidence 1 167888888887 46655 3333 478899999998874 6666422 1124788999999
Q ss_pred CcCC
Q 006185 563 CDLG 566 (657)
Q Consensus 563 ~~c~ 566 (657)
++.+
T Consensus 476 ~~N~ 479 (520)
T 2z7x_B 476 HTNP 479 (520)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8865
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.9e-31 Score=290.06 Aligned_cols=354 Identities=14% Similarity=0.158 Sum_probs=201.9
Q ss_pred ccCCCC-CCCCCcEEEecCCcCcC------------------CCchhhc--CCCCccEEEecCCcC-CCCCccccCCCCC
Q 006185 31 EVPDGL-ECPKLQALFLQKNHLLV------------------IPDPFFQ--GMKDLKVLDLGGIRM-VSPPSSLSFLSNL 88 (657)
Q Consensus 31 ~l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~Lr~L~L~~~~~-~~lp~~~~~l~~L 88 (657)
.+|+.+ ++++|++|++++|.+.. +|+.+ + ++++|++|++++|.+ ..+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 355555 67778888887777775 67663 5 777888888887775 4577777778888
Q ss_pred cEEEccCCC-CC--CCCcccCCC------CCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 89 RTLRLDYCN-HL--PDLSLIGEL------SGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 89 ~~L~l~~~~-~~--~~~~~~~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
++|++++|. .. ..|..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . +++++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 888888776 33 245666655 778888888877777777 77778888888887754444777 3 77777
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCC-ccEEEeecCCCccCCCC-C--CCCCccEEEEEEcCccChhhHH
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR-LTSLHIDIPKGEIMPSD-M--SLPNLTSFSITIGEEDTLNDFI 233 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-~--~l~~L~~L~l~~~~~~~~~~~~ 233 (657)
+|++|++++|.+. ..+..+..+++ |+.|++++|.+..+|.. . .+++|+.|+++++. +.
T Consensus 354 ~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~------l~ 415 (636)
T 4eco_A 354 KLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE------IG 415 (636)
T ss_dssp EESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC------TT
T ss_pred CCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc------CC
Confidence 8888887777553 44556777777 88888888777766665 2 23467777776653 11
Q ss_pred HHHhhccc--------ccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCC
Q 006185 234 ELFLENFN--------KRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCN 305 (657)
Q Consensus 234 ~~~~~~~~--------~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~ 305 (657)
+..++.+. ...++.++++++ .+..+|..+.. .+++|++|++++|
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~--------------------------~l~~L~~L~Ls~N- 467 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFS--------------------------TGSPLSSINLMGN- 467 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHH--------------------------TTCCCSEEECCSS-
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHc--------------------------cCCCCCEEECCCC-
Confidence 11122121 123444444443 22233333333 2455555555555
Q ss_pred CceEEeecccccc---ccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEE
Q 006185 306 EMKCLLNSLERTQ---RVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLM 382 (657)
Q Consensus 306 ~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~ 382 (657)
.+..++....... ...+++|+.|+++++. ++.+. ..+....+++|++|+++++ .++. +|..+ ..+++|++|+
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp-~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~-~~l~~L~~L~ 542 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLS-DDFRATTLPYLVGIDLSYN-SFSK-FPTQP-LNSSTLKGFG 542 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCC-GGGSTTTCTTCCEEECCSS-CCSS-CCCGG-GGCSSCCEEE
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCc-CCccC-hhhhhccCCCcCEEECCCC-CCCC-cChhh-hcCCCCCEEE
Confidence 3333333221100 1112266666666653 22111 0010114566666666664 3444 44443 3566777777
Q ss_pred EcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185 383 VESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 447 (657)
Q Consensus 383 l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~ 447 (657)
++++..+.. ..+.+ ..|..+..+++|++|+++++. ++.++.. -+++|++|++++++
T Consensus 543 Ls~N~~ls~-N~l~~--~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-----~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 543 IRNQRDAQG-NRTLR--EWPEGITLCPSLTQLQIGSND-IRKVNEK-----ITPNISVLDIKDNP 598 (636)
T ss_dssp CCSCBCTTC-CBCCC--CCCTTGGGCSSCCEEECCSSC-CCBCCSC-----CCTTCCEEECCSCT
T ss_pred CCCCccccc-Ccccc--cChHHHhcCCCCCEEECCCCc-CCccCHh-----HhCcCCEEECcCCC
Confidence 754331100 00000 014555666777777777654 3554322 13667777777764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.3e-31 Score=289.23 Aligned_cols=415 Identities=13% Similarity=0.147 Sum_probs=221.6
Q ss_pred CCccEEEccCCCcc-ccCCCC-CCCCCcEEEecCCcCc-------------CCCchhh----------------------
Q 006185 17 EDLTGISLMFNDIH-EVPDGL-ECPKLQALFLQKNHLL-------------VIPDPFF---------------------- 59 (657)
Q Consensus 17 ~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~-------------~~~~~~~---------------------- 59 (657)
.+++.|+++++.+. .+|+.+ .+++|++|++++|.+. .+|...+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57889999999987 778777 8999999999988541 0110000
Q ss_pred -----------------cCCCCccEEEec--CCcCCCCCccccCCCCCcEEEccCCCCCC------------------CC
Q 006185 60 -----------------QGMKDLKVLDLG--GIRMVSPPSSLSFLSNLRTLRLDYCNHLP------------------DL 102 (657)
Q Consensus 60 -----------------~~l~~Lr~L~L~--~~~~~~lp~~~~~l~~L~~L~l~~~~~~~------------------~~ 102 (657)
.....++.+.+. +|+++.+|..++++++|++|++++|.... .|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 000001111111 23343456666666666666666666444 45
Q ss_pred cccC--CCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCC--CCchhHhhcC------ccCcEEEcccCcccc
Q 006185 103 SLIG--ELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLE--LIPPGVLSRL------RKLEELYMSHSFCHW 171 (657)
Q Consensus 103 ~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~--~~~~~~~~~l------~~L~~L~l~~~~~~~ 171 (657)
..++ ++++|++|++++|.+. .+|..++++++|++|++++|..++ .+|.. ++++ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC-
Confidence 5655 6666666666666543 556666666666666666644233 35554 4444 66666666666443
Q ss_pred ccccccccccccchh--hhcCCCCccEEEeecCCCc-cCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185 172 QFESEEDTRSNAKFI--ELGALSRLTSLHIDIPKGE-IMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248 (657)
Q Consensus 172 ~~~g~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 248 (657)
..+. .++.+++|+.|++++|.+. .+|....+++|+.|+++++.-.
T Consensus 319 -----------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--------------------- 366 (636)
T 4eco_A 319 -----------TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--------------------- 366 (636)
T ss_dssp -----------SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE---------------------
T ss_pred -----------ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc---------------------
Confidence 2333 5566666666666666654 5553344455555555543111
Q ss_pred EeecccchhhhHHHHHHHHcc-ccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccc--ccccccccc
Q 006185 249 GLSQDMRISALHSWIKNLLLR-SEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLER--TQRVTLRKL 325 (657)
Q Consensus 249 ~l~~~~~~~~l~~~~~~~~~~-L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~L 325 (657)
.+|.++... ++ |+.|+++++. ++.++..+....+++|++|++++|.-....+..... ...-.+++|
T Consensus 367 ---------~lp~~l~~l-~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 367 ---------EIPANFCGF-TEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp ---------ECCTTSEEE-CTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred ---------cccHhhhhh-cccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 111111111 34 5666665553 333332222223446777777776322111111110 000134577
Q ss_pred cEEeccccccccccccccCCCC---CCCCccEEEEecCCCcccccchhHHHh-------cccCcEEEEcccccceeeeec
Q 006185 326 EWLFIRENQNFVEICHGQLPAG---CLSNVKRLDVVGCGSMLKILPSHLVQS-------FQNLQRLMVESCELLVSVFEI 395 (657)
Q Consensus 326 ~~L~l~~~~~l~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~~~p~~~~~~-------~~~L~~L~l~~c~~l~~~~~~ 395 (657)
+.|+++++. ++ .+|.. .+++|++|+++++. ++. +|...+.. +++|++|+++++ .++.+
T Consensus 436 ~~L~Ls~N~-l~-----~lp~~~~~~l~~L~~L~Ls~N~-l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--- 503 (636)
T 4eco_A 436 SSINLSNNQ-IS-----KFPKELFSTGSPLSSINLMGNM-LTE-IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL--- 503 (636)
T ss_dssp EEEECCSSC-CC-----SCCTHHHHTTCCCSEEECCSSC-CSB-CCSSSSEETTEECTTGGGCCEEECCSS-CCCBC---
T ss_pred CEEECcCCc-cC-----cCCHHHHccCCCCCEEECCCCC-CCC-cCHHHhccccccccccCCccEEECcCC-cCCcc---
Confidence 777777764 22 23332 46778888887753 444 33332221 238888888875 33333
Q ss_pred ccccccccccc--cCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccc
Q 006185 396 ERVNIAKEETE--LFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRR 473 (657)
Q Consensus 396 ~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~ 473 (657)
|..+. .+++|+.|+++++. ++.+ +.....+++|++|+++++..+..
T Consensus 504 ------p~~~~~~~l~~L~~L~Ls~N~-l~~i---p~~~~~l~~L~~L~Ls~N~~ls~---------------------- 551 (636)
T 4eco_A 504 ------SDDFRATTLPYLVGIDLSYNS-FSKF---PTQPLNSSTLKGFGIRNQRDAQG---------------------- 551 (636)
T ss_dssp ------CGGGSTTTCTTCCEEECCSSC-CSSC---CCGGGGCSSCCEEECCSCBCTTC----------------------
T ss_pred ------ChhhhhccCCCcCEEECCCCC-CCCc---ChhhhcCCCCCEEECCCCccccc----------------------
Confidence 45554 78888888888853 5544 33344678888888876542111
Q ss_pred cceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCC
Q 006185 474 YQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCP 529 (657)
Q Consensus 474 l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 529 (657)
..+....|..+..+++|+.|++++|. ++.++ ..+ .++|+.|++++++
T Consensus 552 ----N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip-~~~---~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 552 ----NRTLREWPEGITLCPSLTQLQIGSND-IRKVN-EKI---TPNISVLDIKDNP 598 (636)
T ss_dssp ----CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCC-SCC---CTTCCEEECCSCT
T ss_pred ----CcccccChHHHhcCCCCCEEECCCCc-CCccC-HhH---hCcCCEEECcCCC
Confidence 01111123344456677777776664 35542 222 2677777777765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=280.94 Aligned_cols=462 Identities=17% Similarity=0.126 Sum_probs=307.2
Q ss_pred cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCC
Q 006185 42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKS 119 (657)
Q Consensus 42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~ 119 (657)
++|++++|.+..+|..++ ++|++|++++|.++.++ ..|.++++|++|++++|..... |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999999998763 89999999999998876 6899999999999999995444 688999999999999999
Q ss_pred CCCcccccccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCc--cE
Q 006185 120 DVNEIPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRL--TS 196 (657)
Q Consensus 120 ~i~~lp~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L--~~ 196 (657)
.++.+|.. .+++|++|++++|...+ .+|.. ++++++|++|++++|.+.. ..+..+++| +.
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISK 142 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEE
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch--------------hhccccccceeeE
Confidence 99999987 89999999999965433 35555 8999999999999987542 335566666 99
Q ss_pred EEeecCCC--c-cCCCCCCCCCcc--EEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHcccc
Q 006185 197 LHIDIPKG--E-IMPSDMSLPNLT--SFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSE 271 (657)
Q Consensus 197 L~l~~~~~--~-~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~ 271 (657)
|++++|.+ . ..+.. +..|+ .+.+... +... ...+++.....+++|+
T Consensus 143 L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~-~n~~--------------------------~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEG--LQDFNTESLHIVFP-TNKE--------------------------FHFILDVSVKTVANLE 193 (520)
T ss_dssp EEEEECTTTTSSCCTTT--TTTCCEEEEEEECC-SSSC--------------------------CCCCCCCCCTTCSEEE
T ss_pred EEeeccccccccccccc--ccccccceEEEEec-cCcc--------------------------hhhhhhhhhhccccee
Confidence 99999886 2 22322 33333 4444321 1110 0001111111126788
Q ss_pred EEEEeecc------ccccccccccccccccceEEEeecCCCceEEeeccccc--cccccccccEEecccccccccccccc
Q 006185 272 ILALIEVN------DLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERT--QRVTLRKLEWLFIRENQNFVEICHGQ 343 (657)
Q Consensus 272 ~L~L~~~~------~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~ 343 (657)
.++++++. .+....+.+ ..+++|+.|+++++ .+. ...... .....++|+.|++++|. + .+.
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~-~l~---~~~~~~~~~~~~~~~L~~L~l~~n~-l----~~~ 262 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNI-ETT---WNSFIRILQLVWHTTVWYFSISNVK-L----QGQ 262 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEE-EEE---HHHHHHHHHHHHTSSCSEEEEEEEE-E----ESC
T ss_pred eccccccccccccceeecchhhh--ccccchhhcccccc-ccC---HHHHHHHHHHhhhCcccEEEeeccc-c----cCc
Confidence 88887763 123333333 34789999999877 222 110000 11124589999999885 2 222
Q ss_pred CCC-------CCCCCccEEEEecCCCcccccchhHHHhc---ccCcEEEEcccccceeeeecccccccccccccCCcccE
Q 006185 344 LPA-------GCLSNVKRLDVVGCGSMLKILPSHLVQSF---QNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEK 413 (657)
Q Consensus 344 ~~~-------~~~~~L~~L~l~~c~~l~~~~p~~~~~~~---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~ 413 (657)
+|. +.+++|+.++++++.. . +|...+..+ ++|++|+++++.- ..+ .....+++|+.
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~-~p~~~~~~~~~~~~L~~L~l~~n~l-~~~----------~~~~~l~~L~~ 328 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--G-FPQSYIYEIFSNMNIKNFTVSGTRM-VHM----------LCPSKISPFLH 328 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--C-SCTHHHHHHHHTCCCSEEEEESSCC-CCC----------CCCSSCCCCCE
T ss_pred cccchhhcccccCceeEeccccccce--e-cchhhhhcccccCceeEEEcCCCcc-ccc----------cchhhCCcccE
Confidence 332 4678888888888654 3 452222333 5689999988642 211 01146788888
Q ss_pred EecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCC
Q 006185 414 LTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGN 493 (657)
Q Consensus 414 L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~ 493 (657)
|+++++. ++... +.....+++|++|++++|. ++.+.. .+..+..+++
T Consensus 329 L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N~-l~~l~~-----------------------------~~~~~~~l~~ 375 (520)
T 2z7x_B 329 LDFSNNL-LTDTV--FENCGHLTELETLILQMNQ-LKELSK-----------------------------IAEMTTQMKS 375 (520)
T ss_dssp EECCSSC-CCTTT--TTTCCCCSSCCEEECCSSC-CCBHHH-----------------------------HHHHHTTCTT
T ss_pred EEeECCc-cChhh--hhhhccCCCCCEEEccCCc-cCcccc-----------------------------chHHHhhCCC
Confidence 8888864 44311 2233457888888888863 332200 0112336788
Q ss_pred ccEEEEecCCCcce-ecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCccccc
Q 006185 494 LVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCFS 572 (657)
Q Consensus 494 L~~L~i~~c~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 572 (657)
|+.|+++++. ++. + +...+..+++|++|++++|.--..++. + ..++|+.|+++++ +++.+|
T Consensus 376 L~~L~Ls~N~-l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~------------l~~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 376 LQQLDISQNS-VSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFR---C------------LPPRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp CCEEECCSSC-CBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGG---S------------CCTTCCEEECCSS-CCCCCC
T ss_pred CCEEECCCCc-CCccc-ccchhccCccCCEEECcCCCCCcchhh---h------------hcccCCEEECCCC-cccccc
Confidence 8999998875 444 4 333456788999999999863222210 0 1268999999997 688888
Q ss_pred cCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEeccceeeccCchhHHHHHHH
Q 006185 573 SSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKYCWTGNLNHTIQQYV 634 (657)
Q Consensus 573 ~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~l~~~~l~~~l~~~~ 634 (657)
.+.. .+++|++|++++| +++.+|.. +..+ ++|++|++++++.--..++.+.++.+.
T Consensus 438 -~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 438 -KQVV---KLEALQELNVASN-QLKSVPDGIFDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp -GGGG---GCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred -hhhh---cCCCCCEEECCCC-cCCccCHHHhccC-CcccEEECcCCCCcccCCchHHHHHHH
Confidence 6655 5899999999998 78889976 4444 678999999988443333334334433
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=8.9e-30 Score=284.39 Aligned_cols=453 Identities=14% Similarity=0.120 Sum_probs=267.1
Q ss_pred CCccEEEccCCCcc-ccCCCC-CCCCCcEEEe-cCCcCc-CCCchh----------------------------------
Q 006185 17 EDLTGISLMFNDIH-EVPDGL-ECPKLQALFL-QKNHLL-VIPDPF---------------------------------- 58 (657)
Q Consensus 17 ~~L~~L~l~~~~~~-~l~~~~-~~~~L~~L~l-~~~~~~-~~~~~~---------------------------------- 58 (657)
..++.|+|+++.+. .+|+.+ .+++|++|++ ++|.+. ..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57889999999987 788777 8999999999 666543 111000
Q ss_pred --------------h--cCCCCccEEEecC--CcCCCCCccccCCCCCcEEEccCCCCCC------------------CC
Q 006185 59 --------------F--QGMKDLKVLDLGG--IRMVSPPSSLSFLSNLRTLRLDYCNHLP------------------DL 102 (657)
Q Consensus 59 --------------~--~~l~~Lr~L~L~~--~~~~~lp~~~~~l~~L~~L~l~~~~~~~------------------~~ 102 (657)
. .....++.+.+.. |+++.+|..++++++|++|++++|.... .|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0 0111122222222 4444478888888888888888888555 67
Q ss_pred cccC--CCCCCCEEEeeCCCCC-cccccccCCCCCCEEEccCCCCCC--CCchhHhhcCc-------cCcEEEcccCccc
Q 006185 103 SLIG--ELSGLEILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLE--LIPPGVLSRLR-------KLEELYMSHSFCH 170 (657)
Q Consensus 103 ~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~--~~~~~~~~~l~-------~L~~L~l~~~~~~ 170 (657)
..++ ++++|++|++++|.+. .+|..++++++|++|++++|..++ .+|.. +++++ +|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence 7777 8888888888888754 788888888888888888865344 46765 56665 8888888888654
Q ss_pred cccccccccccccchh--hhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185 171 WQFESEEDTRSNAKFI--ELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248 (657)
Q Consensus 171 ~~~~g~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 248 (657)
.++. .++++++|+.|++++|.+..+|....+++|+.|+++++.
T Consensus 562 ------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~----------------------- 606 (876)
T 4ecn_A 562 ------------EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ----------------------- 606 (876)
T ss_dssp ------------BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-----------------------
T ss_pred ------------ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-----------------------
Confidence 3455 688888888888888887777744555666666655431
Q ss_pred EeecccchhhhHHHHHHHHccccEEEEeecccccccccccccccccc-ceEEEeecCCCceEEeeccccccccccccccE
Q 006185 249 GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNE-LMFLYIFGCNEMKCLLNSLERTQRVTLRKLEW 327 (657)
Q Consensus 249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 327 (657)
+..++..+ ..+++ |+.|++++| .+..++.... ....++|+.
T Consensus 607 --------------------------------l~~lp~~l--~~l~~~L~~L~Ls~N-~L~~lp~~~~---~~~~~~L~~ 648 (876)
T 4ecn_A 607 --------------------------------IEEIPEDF--CAFTDQVEGLGFSHN-KLKYIPNIFN---AKSVYVMGS 648 (876)
T ss_dssp --------------------------------CSCCCTTS--CEECTTCCEEECCSS-CCCSCCSCCC---TTCSSCEEE
T ss_pred --------------------------------cccchHHH--hhccccCCEEECcCC-CCCcCchhhh---ccccCCCCE
Confidence 11111111 12445 555555555 3333332211 111233666
Q ss_pred EeccccccccccccccCC-----CC--CCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccc
Q 006185 328 LFIRENQNFVEICHGQLP-----AG--CLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNI 400 (657)
Q Consensus 328 L~l~~~~~l~~~~~~~~~-----~~--~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 400 (657)
|++++|. + .+.+| .+ ..++|+.|++++|. ++. +|..++..+++|++|+++++ .++.+...... .
T Consensus 649 L~Ls~N~-l----~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~-~ 719 (876)
T 4ecn_A 649 VDFSYNK-I----GSEGRNISCSMDDYKGINASTVTLSYNE-IQK-FPTELFATGSPISTIILSNN-LMTSIPENSLK-P 719 (876)
T ss_dssp EECCSSC-T----TTTSSSCSSCTTTCCCCCEEEEECCSSC-CCS-CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSS-C
T ss_pred EECcCCc-C----CCccccchhhhccccCCCcCEEEccCCc-CCc-cCHHHHccCCCCCEEECCCC-cCCccChHHhc-c
Confidence 6666654 1 11111 11 33467777777753 444 55555556777777777774 33333100000 0
Q ss_pred cccccccCCcccEEecCCCcCcccccCCCCccc--ccCCccEEEeccCcccccccccccccccchhhhhhhcccccceee
Q 006185 401 AKEETELFSSLEKLTLIDLPRMTDIWKGDTQFV--SLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHI 478 (657)
Q Consensus 401 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~--~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~ 478 (657)
.......+++|+.|++++| +++.++ .... .+++|+.|++++| +++. .|..+..+++|+.|+++.+..+.. .
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N-~L~~lp---~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~-N 792 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFN-KLTSLS---DDFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEG-N 792 (876)
T ss_dssp TTSCCTTGGGCCEEECCSS-CCCCCC---GGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTC-C
T ss_pred ccccccccCCccEEECCCC-CCccch---HHhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCccc-c
Confidence 0000122347777777776 455542 2222 5677777777775 4444 366677777777777765431110 2
Q ss_pred cccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccC
Q 006185 479 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLF 558 (657)
Q Consensus 479 ~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~ 558 (657)
.+....|..+..+++|+.|++++|. +..++ ..+ .++|+.|++++|+ +..+.... ..... ......+..-+
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip-~~l---~~~L~~LdLs~N~-l~~i~~~~--~~~~~--~~~~~~L~~n~ 862 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSND-IRKVD-EKL---TPQLYILDIADNP-NISIDVTS--VCPYI--EAGMYVLLYDK 862 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSC-CCBCC-SCC---CSSSCEEECCSCT-TCEEECGG--GHHHH--HTTCCEEECCT
T ss_pred cccccChHHHhcCCCCCEEECCCCC-CCccC-Hhh---cCCCCEEECCCCC-CCccChHH--ccccc--cchheeecCCC
Confidence 2233446677788999999998876 46653 322 3689999999987 43332110 00000 01111233344
Q ss_pred eeEcCcCCCcc
Q 006185 559 SIKLCDLGSLT 569 (657)
Q Consensus 559 ~L~l~~c~~l~ 569 (657)
..+|.+|+.+.
T Consensus 863 ~~~I~gC~~L~ 873 (876)
T 4ecn_A 863 TQDIRGCDALG 873 (876)
T ss_dssp TSEEESCGGGC
T ss_pred ccccCCCCCcc
Confidence 45778888764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.6e-30 Score=287.55 Aligned_cols=358 Identities=13% Similarity=0.151 Sum_probs=187.7
Q ss_pred cCCCC-CCCCCcEEEecCCcCcC------------------CCchh-hcCCCCccEEEecCCcC-CCCCccccCCCCCcE
Q 006185 32 VPDGL-ECPKLQALFLQKNHLLV------------------IPDPF-FQGMKDLKVLDLGGIRM-VSPPSSLSFLSNLRT 90 (657)
Q Consensus 32 l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~l~~Lr~L~L~~~~~-~~lp~~~~~l~~L~~ 90 (657)
+|..+ ++++|++|++++|.+.. +|+.+ |.++++|++|++++|++ ..+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44444 56667777776666665 66654 23666777777766664 356666666777777
Q ss_pred EEccCCCCCC---CCcccCCC-------CCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185 91 LRLDYCNHLP---DLSLIGEL-------SGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158 (657)
Q Consensus 91 L~l~~~~~~~---~~~~~~~l-------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~ 158 (657)
|++++|..++ .|..++++ ++|++|++++|.++.+|. .++++++|++|++++|. +..+| . ++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCc
Confidence 7777665222 34433333 367777777766666666 66667777777776643 44666 2 666667
Q ss_pred CcEEEcccCccccccccccccccccchhhhcCCCC-ccEEEeecCCCccCCCC-CC--CCCccEEEEEEcCccCh-hhHH
Q 006185 159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR-LTSLHIDIPKGEIMPSD-MS--LPNLTSFSITIGEEDTL-NDFI 233 (657)
Q Consensus 159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~-~~--l~~L~~L~l~~~~~~~~-~~~~ 233 (657)
|++|++++|.+. ..+..+..+++ |+.|++++|.+..+|.. .. .++|+.|+++++.-... +.+.
T Consensus 597 L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 597 LTDLKLDYNQIE------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp ESEEECCSSCCS------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ceEEECcCCccc------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 777776666543 34445666666 77777776666655544 11 23366666665421110 0000
Q ss_pred HHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeec
Q 006185 234 ELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNS 313 (657)
Q Consensus 234 ~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~ 313 (657)
.....+.. .+|+.|+++++. +..++..+ ...+++|+.|++++| .+..++..
T Consensus 665 -~~l~~~~~-------------------------~~L~~L~Ls~N~-L~~lp~~~-~~~l~~L~~L~Ls~N-~L~~ip~~ 715 (876)
T 4ecn_A 665 -CSMDDYKG-------------------------INASTVTLSYNE-IQKFPTEL-FATGSPISTIILSNN-LMTSIPEN 715 (876)
T ss_dssp -SCTTTCCC-------------------------CCEEEEECCSSC-CCSCCHHH-HHTTCCCSEEECCSC-CCSCCCTT
T ss_pred -hhhccccC-------------------------CCcCEEEccCCc-CCccCHHH-HccCCCCCEEECCCC-cCCccChH
Confidence 00000111 245555555442 22222111 113455666666655 44433333
Q ss_pred ccccc---ccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccce
Q 006185 314 LERTQ---RVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLV 390 (657)
Q Consensus 314 ~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~ 390 (657)
..... ...+++|+.|++++|. ++.+. ..+....+++|+.|++++| .++. +|..+ ..+++|+.|++++++.+.
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp-~~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l-~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNK-LTSLS-DDFRATTLPYLSNMDVSYN-CFSS-FPTQP-LNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSC-CCCCC-GGGSTTTCTTCCEEECCSS-CCSS-CCCGG-GGCTTCCEEECCCCBCTT
T ss_pred HhccccccccccCCccEEECCCCC-Cccch-HHhhhccCCCcCEEEeCCC-CCCc-cchhh-hcCCCCCEEECCCCCCcc
Confidence 22100 1123366666666663 32211 1111124667777777774 3444 34443 467777777776643111
Q ss_pred eeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185 391 SVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 447 (657)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~ 447 (657)
.- .+.+ ..|..+..+++|+.|++++|. +..++.. -+++|+.|++++|+
T Consensus 791 ~N-~l~~--~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-----l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 791 GN-RILR--QWPTGITTCPSLIQLQIGSND-IRKVDEK-----LTPQLYILDIADNP 838 (876)
T ss_dssp CC-BCCC--CCCTTGGGCSSCCEEECCSSC-CCBCCSC-----CCSSSCEEECCSCT
T ss_pred cc-cccc--cChHHHhcCCCCCEEECCCCC-CCccCHh-----hcCCCCEEECCCCC
Confidence 10 0000 015556667777777777764 3555332 13577777777765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.5e-28 Score=265.75 Aligned_cols=457 Identities=17% Similarity=0.155 Sum_probs=252.3
Q ss_pred CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEc
Q 006185 15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRL 93 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l 93 (657)
.+...++++++++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+ |..|+++++|++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34555777787777777776543 6777788877777777766677777888888877777665 566777777777777
Q ss_pred cCCCCCCCCcccCCCCCCCEEEeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCchhHhhcCccC--cEEEcccCcc
Q 006185 94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL--EELYMSHSFC 169 (657)
Q Consensus 94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 169 (657)
++|...+.|.. .+++|++|++++|.++.+| ..++++++|++|+++++ .+.... +..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 77774444444 6777777777777777543 56777777777777774 333322 4444555 7777777654
Q ss_pred ccccccccccccccchhhhcCCCCccE--EEeecCCCcc-CCCC--CCCCCccEEEEEEcCccChhhHHHHHhhcccccC
Q 006185 170 HWQFESEEDTRSNAKFIELGALSRLTS--LHIDIPKGEI-MPSD--MSLPNLTSFSITIGEEDTLNDFIELFLENFNKRC 244 (657)
Q Consensus 170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~--L~l~~~~~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (657)
.. .+ ..+..+..+.. +. +++..|.... ++.. ..+++|+.+++.++.
T Consensus 182 ~~--~~-------~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~------------------- 232 (562)
T 3a79_B 182 HI--KG-------GETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND------------------- 232 (562)
T ss_dssp CC--CS-------SSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS-------------------
T ss_pred cc--cc-------cCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccc-------------------
Confidence 10 01 22333333321 22 2333333321 1111 233444444444321
Q ss_pred cceEEeecccchhhhHHHHHHH--HccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccc
Q 006185 245 SRAMGLSQDMRISALHSWIKNL--LLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTL 322 (657)
Q Consensus 245 l~~l~l~~~~~~~~l~~~~~~~--~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 322 (657)
.....++..+... .++++.+.+.++.--.... ..++. ....
T Consensus 233 ---------~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~----------------------~~~~~------~~~~ 275 (562)
T 3a79_B 233 ---------ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS----------------------VKLFQ------FFWP 275 (562)
T ss_dssp ---------TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH----------------------HHHHH------HHTT
T ss_pred ---------cccchHHHHHHHHhccCcceEEEecCCcCcHHHH----------------------HHHHH------hhhc
Confidence 0011111111111 1444444444331100000 00000 0012
Q ss_pred ccccEEeccccccccccccccCCC-------CCCCCccEEEEecCCCcccccchhHHHh---cccCcEEEEcccccceee
Q 006185 323 RKLEWLFIRENQNFVEICHGQLPA-------GCLSNVKRLDVVGCGSMLKILPSHLVQS---FQNLQRLMVESCELLVSV 392 (657)
Q Consensus 323 ~~L~~L~l~~~~~l~~~~~~~~~~-------~~~~~L~~L~l~~c~~l~~~~p~~~~~~---~~~L~~L~l~~c~~l~~~ 392 (657)
++|++|++++|. ..+.+|. +.++.|+.+++.... + .+|...... ..+|++|+++++.-. .+
T Consensus 276 ~~L~~L~l~~n~-----l~~~ip~~~~~~~~~~L~~L~~~~~~~~~-~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~ 346 (562)
T 3a79_B 276 RPVEYLNIYNLT-----ITERIDREEFTYSETALKSLMIEHVKNQV-F--LFSKEALYSVFAEMNIKMLSISDTPFI-HM 346 (562)
T ss_dssp SSEEEEEEEEEE-----ECSCCCCCCCCCCSCSCCEEEEEEEEECC-C--SSCHHHHHHHHHTCCCSEEEEESSCCC-CC
T ss_pred ccccEEEEeccE-----eeccccchhhhcccccchheehhhcccce-e--ecChhhhhhhhccCcceEEEccCCCcc-cc
Confidence 355555555553 1222222 223333344444422 2 234222122 256888888875421 11
Q ss_pred eecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhccc
Q 006185 393 FEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNR 472 (657)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~ 472 (657)
.....+++|+.|+++++. ++... +.....+++|++|+++++ +++.+.+
T Consensus 347 ----------~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~------------------ 394 (562)
T 3a79_B 347 ----------VCPPSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRN-GLKNFFK------------------ 394 (562)
T ss_dssp ----------CCCSSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSS-CCCBTTH------------------
T ss_pred ----------cCccCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCC-CcCCccc------------------
Confidence 011456778888888764 33311 223345778888888875 4443311
Q ss_pred ccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceE
Q 006185 473 RYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKI 552 (657)
Q Consensus 473 ~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~ 552 (657)
.+..+..+++|+.|+++++. ++...+......+++|++|++++|.--..++ .
T Consensus 395 -----------~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~--- 446 (562)
T 3a79_B 395 -----------VALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF-------------R--- 446 (562)
T ss_dssp -----------HHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-------------S---
T ss_pred -----------chhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh-------------h---
Confidence 01234467788888887765 4431233345677888888888875222121 0
Q ss_pred ec-cccCeeEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCC-CccccceeceeEecccee
Q 006185 553 TF-PSLFSIKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYG-NQLTPKLLKGVEFGYCKY 620 (657)
Q Consensus 553 ~~-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~-~~~l~~~L~~L~i~~C~~ 620 (657)
.+ ++|+.|+++++ +++.+| .+.. .+++|++|+++++ +++.+|.. +..+ +.|+.|+++++|.
T Consensus 447 ~l~~~L~~L~L~~N-~l~~ip-~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~L~l~~N~~ 509 (562)
T 3a79_B 447 CLPPKVKVLDLHNN-RIMSIP-KDVT---HLQALQELNVASN-QLKSVPDGVFDRL-TSLQYIWLHDNPW 509 (562)
T ss_dssp SCCTTCSEEECCSS-CCCCCC-TTTT---SSCCCSEEECCSS-CCCCCCTTSTTTC-TTCCCEECCSCCB
T ss_pred hhcCcCCEEECCCC-cCcccC-hhhc---CCCCCCEEECCCC-CCCCCCHHHHhcC-CCCCEEEecCCCc
Confidence 13 68999999986 788888 7665 5799999999886 67788876 5454 6689999988874
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.8e-27 Score=263.86 Aligned_cols=521 Identities=18% Similarity=0.158 Sum_probs=328.4
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+.++.++|.- -.+.+++|+|++|.|+.+++.. ++++|++|++++|.+..+++.+|.++++|++|+|++|+++.+|.
T Consensus 40 ~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 40 ELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 4578888841 2368999999999999998654 89999999999999999999889999999999999999998875
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.|.++++|++|++++|.....+ ..++++++|++|++++|.++ .+|..++++++|++|++++| .++.++...+..+.
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 197 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchh
Confidence 6899999999999999955555 56999999999999999987 45788999999999999994 56666554466665
Q ss_pred cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc-cCCCC--CCCCCccEEEEEEcCccChh
Q 006185 158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE-IMPSD--MSLPNLTSFSITIGEEDTLN 230 (657)
Q Consensus 158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~ 230 (657)
+++ .++++.+.+.. ..........++.+++..+... .+... ..+..++...+.........
T Consensus 198 ~l~~~~~~~~ls~n~l~~------------i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNF------------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp TCTTCCCEEECTTCCCCE------------ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred hhhhhhhhhhcccCcccc------------cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 544 56777665432 1222223334445555444321 00000 22333443333322110000
Q ss_pred hHHHHHhhccc-ccCcceEEeecc---cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185 231 DFIELFLENFN-KRCSRAMGLSQD---MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE 306 (657)
Q Consensus 231 ~~~~~~~~~~~-~~~l~~l~l~~~---~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~ 306 (657)
.........+. ...+....+... ......+.. .....+++.+.+.++.. .... .+ .....++.|++.++ .
T Consensus 266 ~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~-~~~~-~~--~~~~~L~~L~l~~~-~ 339 (635)
T 4g8a_A 266 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTI-ERVK-DF--SYNFGWQHLELVNC-K 339 (635)
T ss_dssp CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEE-EECG-GG--GSCCCCSEEEEESC-E
T ss_pred ccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhccccccccccccc-cccc-cc--ccchhhhhhhcccc-c
Confidence 00000000000 011111111111 000001111 11125677777766532 1111 11 23567888888887 2
Q ss_pred ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185 307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC 386 (657)
Q Consensus 307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c 386 (657)
+..++ ...++.|+.+.+.++.. ....+...+++|+.++++++..............+.+|+.+++..+
T Consensus 340 ~~~~~-------~~~l~~L~~l~l~~n~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~ 407 (635)
T 4g8a_A 340 FGQFP-------TLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN 407 (635)
T ss_dssp ESSCC-------CCBCTTCCEEEEESCCS-----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred ccCcC-------cccchhhhhcccccccC-----CCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence 22221 12367788888877652 2233344678899998888543222122222346788888888775
Q ss_pred ccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhh
Q 006185 387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEM 466 (657)
Q Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l 466 (657)
... .+ +..+..+++|+.+++.++....... ......+++++.++++++ .+....+..+..+++++.+
T Consensus 408 ~~~-~~---------~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 408 GVI-TM---------SSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SEE-EE---------CSCCTTCTTCCEEECTTSEEESTTS--SCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEE
T ss_pred ccc-cc---------cccccccccccchhhhhcccccccc--cccccccccccccccccc-ccccccccccccchhhhhh
Confidence 432 22 3345667888888888766544322 223345778888888875 5566667778888888888
Q ss_pred hhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccC
Q 006185 467 VLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQG 546 (657)
Q Consensus 467 ~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~ 546 (657)
.+.++.... ...+..+..+++|+.|++++| +++.+.+. .+..+++|++|+++++. ++.++.
T Consensus 475 ~Ls~N~~~~------~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N~-l~~l~~---------- 535 (635)
T 4g8a_A 475 KMAGNSFQE------NFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHNN-FFSLDT---------- 535 (635)
T ss_dssp ECTTCEEGG------GEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTSC-CCBCCC----------
T ss_pred hhhhccccc------ccCchhhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCCc-CCCCCh----------
Confidence 888753222 123556778889999999887 57776444 34788999999998874 555532
Q ss_pred CCcceEeccccCeeEcCcCCCccccccCCCcceeec-cccceeeeccCC
Q 006185 547 ASTKKITFPSLFSIKLCDLGSLTCFSSSGLHATVEF-LALEALQIIDCP 594 (657)
Q Consensus 547 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~-~sL~~L~i~~C~ 594 (657)
.....+++|+.|++++. +++.++...+. .+ ++|+.|++++.|
T Consensus 536 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~---~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 536 --FPYKCLNSLQVLDYSLN-HIMTSKKQELQ---HFPSSLAFLNLTQND 578 (635)
T ss_dssp --GGGTTCTTCCEEECTTS-CCCBCCSSCTT---CCCTTCCEEECTTCC
T ss_pred --hHHhCCCCCCEEECCCC-cCCCCCHHHHH---hhhCcCCEEEeeCCC
Confidence 11224788999999984 67776524443 34 689999997644
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2e-28 Score=259.94 Aligned_cols=343 Identities=20% Similarity=0.233 Sum_probs=220.2
Q ss_pred CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEc
Q 006185 14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRL 93 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l 93 (657)
..++++++|+++++.+..++....+++|++|++++|.+..+++ |.++++|++|++++|.+..++. ++++++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3467889999999988888865588899999999998887776 6889999999999998888776 889999999999
Q ss_pred cCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185 94 DYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 94 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
++|. ++....++++++|++|++++|.++.+| .++++++|++|++.+ ....++. +.++++|++|++++|.+.
T Consensus 120 ~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 120 FNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred CCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC---
Confidence 9988 444444889999999999999888876 488899999999864 3444544 788999999999888653
Q ss_pred ccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185 174 ESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD 253 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 253 (657)
....+..+++|+.|++++|.+..++....+++|+.|++.++.....+.+
T Consensus 191 ----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l--------------------- 239 (466)
T 1o6v_A 191 ----------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL--------------------- 239 (466)
T ss_dssp ----------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG---------------------
T ss_pred ----------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh---------------------
Confidence 2244778888999999888876555445567777777765422111100
Q ss_pred cchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEecccc
Q 006185 254 MRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIREN 333 (657)
Q Consensus 254 ~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (657)
. .+++|+.|+++++. +....+ ...+++|++|++++| .+..++. ...+++|+.|++++|
T Consensus 240 ----------~-~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~------~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 240 ----------A-SLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNISP------LAGLTALTNLELNEN 297 (466)
T ss_dssp ----------G-GCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCGG------GTTCTTCSEEECCSS
T ss_pred ----------h-cCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCcccc------ccCCCccCeEEcCCC
Confidence 0 11456666665552 222222 123566666666666 3332222 223566666666665
Q ss_pred ccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCCcccE
Q 006185 334 QNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFSSLEK 413 (657)
Q Consensus 334 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~ 413 (657)
. + .+..+.+.+++|+.|++++| .+++..| +..+++|++|++++| .++.+ ..+..+++|+.
T Consensus 298 ~-l----~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~----------~~l~~l~~L~~ 357 (466)
T 1o6v_A 298 Q-L----EDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV----------SSLANLTNINW 357 (466)
T ss_dssp C-C----SCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC----------GGGTTCTTCCE
T ss_pred c-c----cCchhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc----------hhhccCCCCCE
Confidence 4 2 22223445566666666664 3333333 135566666666654 22222 12345566666
Q ss_pred EecCCCcCcccccCCCCcccccCCccEEEeccC
Q 006185 414 LTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEEC 446 (657)
Q Consensus 414 L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C 446 (657)
|++++|. ++.+. +...+++|++|++++|
T Consensus 358 L~l~~n~-l~~~~----~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 358 LSAGHNQ-ISDLT----PLANLTRITQLGLNDQ 385 (466)
T ss_dssp EECCSSC-CCBCG----GGTTCTTCCEEECCCE
T ss_pred EeCCCCc-cCccc----hhhcCCCCCEEeccCC
Confidence 6666553 33321 1334556666666654
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.3e-27 Score=251.74 Aligned_cols=335 Identities=20% Similarity=0.280 Sum_probs=262.7
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS 83 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~ 83 (657)
+.+++.+|.+..+++|++|++++|.++.++....+++|++|++++|.+..+++ |.++++|++|++++|.++.++. +.
T Consensus 55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~ 131 (466)
T 1o6v_A 55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LK 131 (466)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred CCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-Hc
Confidence 45678889899999999999999999988874489999999999999998877 7999999999999999998876 89
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~ 163 (657)
++++|++|++++|. +.....++++++|++|++++ .+..++. +.++++|++|++++| .+..++. +.++++|++|+
T Consensus 132 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 205 (466)
T 1o6v_A 132 NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLI 205 (466)
T ss_dssp TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEE
T ss_pred CCCCCCEEECCCCc-cCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEE
Confidence 99999999999998 55556799999999999974 5555554 999999999999995 4666664 89999999999
Q ss_pred cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccccc
Q 006185 164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR 243 (657)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 243 (657)
+++|.+.. ...++.+++|+.|++++|.+..++....+++|+.|+++++.....+.+
T Consensus 206 l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~----------- 261 (466)
T 1o6v_A 206 ATNNQISD-------------ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL----------- 261 (466)
T ss_dssp CCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-----------
T ss_pred ecCCcccc-------------cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhh-----------
Confidence 99986542 222778999999999999987776667789999999987643221111
Q ss_pred CcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccc
Q 006185 244 CSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR 323 (657)
Q Consensus 244 ~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 323 (657)
..+++|+.|+++++ .+....+ + ..+++|++|++++| .+..++. ...++
T Consensus 262 ---------------------~~l~~L~~L~l~~n-~l~~~~~-~--~~l~~L~~L~L~~n-~l~~~~~------~~~l~ 309 (466)
T 1o6v_A 262 ---------------------SGLTKLTELKLGAN-QISNISP-L--AGLTALTNLELNEN-QLEDISP------ISNLK 309 (466)
T ss_dssp ---------------------TTCTTCSEEECCSS-CCCCCGG-G--TTCTTCSEEECCSS-CCSCCGG------GGGCT
T ss_pred ---------------------hcCCCCCEEECCCC-ccCcccc-c--cCCCccCeEEcCCC-cccCchh------hcCCC
Confidence 11267888888777 3343333 2 35899999999998 4554332 34589
Q ss_pred cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccccccc
Q 006185 324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKE 403 (657)
Q Consensus 324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 403 (657)
+|+.|++++|. + .+..+.+.+++|++|++++| .+++. +. +..+++|++|++++|. +..+ +.
T Consensus 310 ~L~~L~L~~n~-l----~~~~~~~~l~~L~~L~l~~n-~l~~~-~~--l~~l~~L~~L~l~~n~-l~~~---------~~ 370 (466)
T 1o6v_A 310 NLTYLTLYFNN-I----SDISPVSSLTKLQRLFFYNN-KVSDV-SS--LANLTNINWLSAGHNQ-ISDL---------TP 370 (466)
T ss_dssp TCSEEECCSSC-C----SCCGGGGGCTTCCEEECCSS-CCCCC-GG--GTTCTTCCEEECCSSC-CCBC---------GG
T ss_pred CCCEEECcCCc-C----CCchhhccCccCCEeECCCC-ccCCc-hh--hccCCCCCEEeCCCCc-cCcc---------ch
Confidence 99999999986 3 34445668899999999997 56553 32 2578999999999864 3333 12
Q ss_pred ccccCCcccEEecCCCcCccc
Q 006185 404 ETELFSSLEKLTLIDLPRMTD 424 (657)
Q Consensus 404 ~~~~~~~L~~L~l~~c~~L~~ 424 (657)
+..+++|+.|++++|+ ++.
T Consensus 371 -~~~l~~L~~L~l~~n~-~~~ 389 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQA-WTN 389 (466)
T ss_dssp -GTTCTTCCEEECCCEE-EEC
T ss_pred -hhcCCCCCEEeccCCc-ccC
Confidence 6778999999999975 444
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=6.3e-28 Score=262.53 Aligned_cols=446 Identities=16% Similarity=0.134 Sum_probs=268.2
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS 80 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 80 (657)
++++++++|.- ..+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|+++++|.
T Consensus 39 s~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 39 SNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 35678888852 24899999999999998875 33 89999999999999998877778999999999999999999998
Q ss_pred cccCCCCCcEEEccCCCCCCC--CcccCCCCCCCEEEeeCCCCCcccccccCCCCC--CEEEccCCCC--CCCCchhHhh
Q 006185 81 SLSFLSNLRTLRLDYCNHLPD--LSLIGELSGLEILDLSKSDVNEIPVSFGRLSHL--RLLDLTDCYN--LELIPPGVLS 154 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~c~~--~~~~~~~~~~ 154 (657)
. .+++|++|++++|..... |..++++++|++|+++++.++. ..+..+++| ++|++++|.. .+..|.. +.
T Consensus 118 ~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~ 192 (562)
T 3a79_B 118 C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETES-LQ 192 (562)
T ss_dssp C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCE-EE
T ss_pred c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccc-cc
Confidence 7 899999999999995443 4789999999999999999885 245555566 9999999654 3444433 44
Q ss_pred cCc--cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC--c----cCCCCCCCCCccEEEEEEcCc
Q 006185 155 RLR--KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG--E----IMPSDMSLPNLTSFSITIGEE 226 (657)
Q Consensus 155 ~l~--~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~----~~~~~~~l~~L~~L~l~~~~~ 226 (657)
.+. .+ ++++++|.+... .....+..+++|+.+++++|.. . .++....+++|+.+++..+.-
T Consensus 193 ~l~~~~l-~l~l~~n~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 193 IPNTTVL-HLVFHPNSLFSV----------QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp ECCEEEE-EEEECSSSCCCC----------CCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred ccCcceE-EEEecCccchhh----------hhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 443 12 334444433210 1112344566777777776641 0 111113445666666654421
Q ss_pred cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHH-HccccEEEEeeccccccccc-ccccc--ccccceEEEee
Q 006185 227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNL-LLRSEILALIEVNDLENIFS-NLAND--DFNELMFLYIF 302 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~-~~~L~~L~L~~~~~l~~~~~-~l~~~--~~~~L~~L~l~ 302 (657)
....+ ..+++......++.++++++.-...+|.++... ..+++.|.+.+...-.-..| ..... ...+|++|+++
T Consensus 262 -~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 262 -TWKCS-VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp -CHHHH-HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred -cHHHH-HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 11111 111222233466666666653222344332100 03444444443321110111 00000 01457777777
Q ss_pred cCCCceEEeeccccccccccccccEEeccccccccccccccCC--CCCCCCccEEEEecCCCcccccc-hhHHHhcccCc
Q 006185 303 GCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLP--AGCLSNVKRLDVVGCGSMLKILP-SHLVQSFQNLQ 379 (657)
Q Consensus 303 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~p-~~~~~~~~~L~ 379 (657)
+|. +..... ...+++|+.|+++++. ++ +..| .+.+++|++|+++++ .++.+.+ ...+..+++|+
T Consensus 340 ~n~-~~~~~~------~~~l~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 340 DTP-FIHMVC------PPSPSSFTFLNFTQNV-FT----DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp SSC-CCCCCC------CSSCCCCCEEECCSSC-CC----TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCC
T ss_pred CCC-cccccC------ccCCCCceEEECCCCc-cc----cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCC
Confidence 773 322111 1236777888887775 22 2222 236777888888774 4544211 11125677888
Q ss_pred EEEEcccccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCccccc-CCccEEEeccCcccccccccccc
Q 006185 380 RLMVESCELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSL-HNLKKVRVEECDELRQVFPANLG 458 (657)
Q Consensus 380 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~-~~L~~L~i~~C~~L~~~~~~~l~ 458 (657)
+|+++++.--..+. +..+..+++|+.|+++++. ++... ...+ ++|++|+++++ +++.+ |..+.
T Consensus 407 ~L~l~~N~l~~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~l~~~L~~L~L~~N-~l~~i-p~~~~ 470 (562)
T 3a79_B 407 TLDVSLNSLNSHAY--------DRTCAWAESILVLNLSSNM-LTGSV-----FRCLPPKVKVLDLHNN-RIMSI-PKDVT 470 (562)
T ss_dssp EEECTTSCCBSCCS--------SCCCCCCTTCCEEECCSSC-CCGGG-----GSSCCTTCSEEECCSS-CCCCC-CTTTT
T ss_pred EEECCCCcCCCccC--------hhhhcCcccCCEEECCCCC-CCcch-----hhhhcCcCCEEECCCC-cCccc-Chhhc
Confidence 88887754221121 1224556778888888764 33211 1112 57888888876 56655 44445
Q ss_pred cccchhhhhhhcccccceeecccccCCCC-CCCCCCccEEEEecCCC
Q 006185 459 KKAAAEEMVLYRNRRYQIHIHATTSTSSP-TPSLGNLVSITIRGCGK 504 (657)
Q Consensus 459 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~-~~~~~~L~~L~i~~c~~ 504 (657)
.+++|++|+++++ .+. ..|.. +..+++|+.|++++++-
T Consensus 471 ~l~~L~~L~L~~N-------~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 471 HLQALQELNVASN-------QLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCSEEECCSS-------CCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCCEEECCCC-------CCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 7788888887763 222 22333 67889999999998763
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.6e-27 Score=238.59 Aligned_cols=150 Identities=20% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL 91 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L 91 (657)
.+..++++++|+++++.+..++....+++|++|++++|.+..++. |.++++|++|++++|.++.++ .+.++++|++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 344455555555555555555443355555555555555554444 455555555555555555443 35555555555
Q ss_pred EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185 92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF 168 (657)
Q Consensus 92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (657)
++++|. ++....+.++++|++|++++|.....+..+.++++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 116 ~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSC
T ss_pred ECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCc
Confidence 555555 22222255555555555555533322223555555555555553 2333333 4455555555555543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.4e-25 Score=237.79 Aligned_cols=364 Identities=16% Similarity=0.190 Sum_probs=205.9
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCC-CC-CccccCCCCCcEEEccCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMV-SP-PSSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~-~l-p~~~~~l~~L~~L~l~~~~ 97 (657)
+.++.+++.++.+|. -.++|++|++++|.+..+++..|+++++|++|++++|.+. .+ +..|.++++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 456666666666666 2256777777777766555445677777777777777664 33 4456677777777777776
Q ss_pred CCCC-CcccCCCCCCCEEEeeCCCCCc-cccc--ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185 98 HLPD-LSLIGELSGLEILDLSKSDVNE-IPVS--FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 98 ~~~~-~~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
.... |..++++++|++|++++|.++. .|.. ++++++|++|++++|...+..|...+.++++|++|++++|.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-- 168 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-- 168 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC--
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc--
Confidence 3332 5667777777777777777663 3333 66777777777777443333344435677777777777765432
Q ss_pred ccccccccccchhhhcCC--CCccEEEeecCCCccCCCC----------CCCCCccEEEEEEcCccChhhHHHHHhhccc
Q 006185 174 ESEEDTRSNAKFIELGAL--SRLTSLHIDIPKGEIMPSD----------MSLPNLTSFSITIGEEDTLNDFIELFLENFN 241 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~----------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 241 (657)
..+..+..+ .+|+.|+++++....++.. ..+++|+.|+++
T Consensus 169 ---------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls------------------- 220 (455)
T 3v47_A 169 ---------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS------------------- 220 (455)
T ss_dssp ---------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT-------------------
T ss_pred ---------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC-------------------
Confidence 222333333 4666777776665444332 122344444443
Q ss_pred ccCcceEEeecccchhhhHHHHHHHH--ccccEEEEeeccccccccc----------cccccccccceEEEeecCCCceE
Q 006185 242 KRCSRAMGLSQDMRISALHSWIKNLL--LRSEILALIEVNDLENIFS----------NLANDDFNELMFLYIFGCNEMKC 309 (657)
Q Consensus 242 ~~~l~~l~l~~~~~~~~l~~~~~~~~--~~L~~L~L~~~~~l~~~~~----------~l~~~~~~~L~~L~l~~~~~l~~ 309 (657)
++.-....|.++.... .+++.|++.++........ .+..-..++|++|++++| .+..
T Consensus 221 ----------~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 289 (455)
T 3v47_A 221 ----------GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFA 289 (455)
T ss_dssp ----------TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCE
T ss_pred ----------CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccc
Confidence 3322233444444432 6677777766632211110 001112357888888877 4444
Q ss_pred EeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccc
Q 006185 310 LLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELL 389 (657)
Q Consensus 310 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l 389 (657)
.+.. ....+++|+.|+++++. ++.... ...+.+++|++|++++| .++.+.+..+ ..+++|++|+++++. +
T Consensus 290 ~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l 359 (455)
T 3v47_A 290 LLKS----VFSHFTDLEQLTLAQNE-INKIDD--NAFWGLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYNH-I 359 (455)
T ss_dssp ECTT----TTTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSSC-C
T ss_pred cchh----hcccCCCCCEEECCCCc-ccccCh--hHhcCcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCCc-c
Confidence 4322 22347778888887775 222111 11235677788888775 4555444433 567777777777753 3
Q ss_pred eeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCc
Q 006185 390 VSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECD 447 (657)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~ 447 (657)
+.+. +..+..+++|+.|+++++ .++.++.. ....+++|++|++++++
T Consensus 360 ~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 360 RALG--------DQSFLGLPNLKELALDTN-QLKSVPDG--IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEC--------TTTTTTCTTCCEEECCSS-CCSCCCTT--TTTTCTTCCEEECCSSC
T ss_pred cccC--------hhhccccccccEEECCCC-ccccCCHh--HhccCCcccEEEccCCC
Confidence 3321 344566777777777774 45554322 22346777777777754
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.5e-26 Score=243.03 Aligned_cols=404 Identities=16% Similarity=0.119 Sum_probs=181.4
Q ss_pred CCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCc-------------cEEEecCCcCCCCC
Q 006185 15 TFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDL-------------KVLDLGGIRMVSPP 79 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L-------------r~L~L~~~~~~~lp 79 (657)
+.+.|++|++++|.++.+|+.+ ++++|++|++++|.+. .+|.. ++++++| ++|++++++++.+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 4567777777777777777666 7777777777777766 56655 3666654 67777777766666
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L 159 (657)
.. .++|++|++++|.....|.. +.+|++|++++|.++.+|... ++|++|++++| .++.+| + ++++++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n-~l~~lp-~-~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN-QLEKLP-E-LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS-CCSSCC-C-CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCC-CCCCCc-c-cCCCCCC
Confidence 52 25677777777664444432 356777777777666555321 46777777764 344566 2 6667777
Q ss_pred cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhc
Q 006185 160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLEN 239 (657)
Q Consensus 160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (657)
++|++++|.+.. .+. ...+|+.|++++|.+..++....+++|+.|++.
T Consensus 156 ~~L~l~~N~l~~------------lp~---~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~----------------- 203 (454)
T 1jl5_A 156 KIIDVDNNSLKK------------LPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD----------------- 203 (454)
T ss_dssp CEEECCSSCCSC------------CCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC-----------------
T ss_pred CEEECCCCcCcc------------cCC---CcccccEEECcCCcCCcCccccCCCCCCEEECC-----------------
Confidence 777776664431 111 123666666666665555533444444444443
Q ss_pred ccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccc
Q 006185 240 FNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQR 319 (657)
Q Consensus 240 ~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 319 (657)
++ .++.+ +. ..++|++|++++| .++.++. .
T Consensus 204 -------------------------------------~N-~l~~l-~~----~~~~L~~L~l~~n-~l~~lp~------~ 233 (454)
T 1jl5_A 204 -------------------------------------NN-SLKKL-PD----LPLSLESIVAGNN-ILEELPE------L 233 (454)
T ss_dssp -------------------------------------SS-CCSSC-CC----CCTTCCEEECCSS-CCSSCCC------C
T ss_pred -------------------------------------CC-cCCcC-CC----CcCcccEEECcCC-cCCcccc------c
Confidence 22 11111 11 1246777777777 4444432 2
Q ss_pred cccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeeccccc
Q 006185 320 VTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVN 399 (657)
Q Consensus 320 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 399 (657)
..+++|+.|+++++. ++. +|. .+++|++|++++|. ++. +|.. +++|++|+++++. ++.+
T Consensus 234 ~~l~~L~~L~l~~N~-l~~-----l~~-~~~~L~~L~l~~N~-l~~-l~~~----~~~L~~L~ls~N~-l~~l------- 292 (454)
T 1jl5_A 234 QNLPFLTTIYADNNL-LKT-----LPD-LPPSLEALNVRDNY-LTD-LPEL----PQSLTFLDVSENI-FSGL------- 292 (454)
T ss_dssp TTCTTCCEEECCSSC-CSS-----CCS-CCTTCCEEECCSSC-CSC-CCCC----CTTCCEEECCSSC-CSEE-------
T ss_pred CCCCCCCEEECCCCc-CCc-----ccc-cccccCEEECCCCc-ccc-cCcc----cCcCCEEECcCCc-cCcc-------
Confidence 246777777777764 221 222 34677777777743 444 3322 3667777777642 3222
Q ss_pred ccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccCcccccccccccccccchhhhhhhcccccceeec
Q 006185 400 IAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIH 479 (657)
Q Consensus 400 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~ 479 (657)
+ ...++|+.|+++++ .++.+.. ..++|++|+++++ +++.+ |
T Consensus 293 --~---~~~~~L~~L~l~~N-~l~~i~~------~~~~L~~L~Ls~N-~l~~l-p------------------------- 333 (454)
T 1jl5_A 293 --S---ELPPNLYYLNASSN-EIRSLCD------LPPSLEELNVSNN-KLIEL-P------------------------- 333 (454)
T ss_dssp --S---CCCTTCCEEECCSS-CCSEECC------CCTTCCEEECCSS-CCSCC-C-------------------------
T ss_pred --c---CcCCcCCEEECcCC-cCCcccC------CcCcCCEEECCCC-ccccc-c-------------------------
Confidence 1 11256677777664 3444321 0246666666664 23322 1
Q ss_pred ccccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCe
Q 006185 480 ATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFS 559 (657)
Q Consensus 480 ~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~ 559 (657)
. .+++|+.|++++| +++.++. .+++|++|+++++. +..++.. ...+..
T Consensus 334 ------~---~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~i----------------p~~l~~ 381 (454)
T 1jl5_A 334 ------A---LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDI----------------PESVED 381 (454)
T ss_dssp ------C---CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCC----------------CTTCCE
T ss_pred ------c---cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCC----------------hHHHHh
Confidence 1 2466777777766 3555422 35677777777764 3332110 112333
Q ss_pred eEcCcCCCccccccCCCcceeeccccceeeeccCCCcceecCCCccccceeceeEeccce
Q 006185 560 IKLCDLGSLTCFSSSGLHATVEFLALEALQIIDCPGMKTFGYGNQLTPKLLKGVEFGYCK 619 (657)
Q Consensus 560 L~l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~l~~lp~~~~~l~~~L~~L~i~~C~ 619 (657)
|... .....+| . .+++|++|+++++ .++.+|. .|.+++.|.+.+|.
T Consensus 382 L~~n--~~~~~i~-~------~~~~L~~L~ls~N-~l~~~~~----iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 382 LRMN--SHLAEVP-E------LPQNLKQLHVETN-PLREFPD----IPESVEDLRMNSER 427 (454)
T ss_dssp EECC--C-----------------------------------------------------
T ss_pred hhhc--ccccccc-c------ccCcCCEEECCCC-cCCcccc----chhhHhheeCcCcc
Confidence 3221 1222333 1 2378999999886 4555544 57888888888775
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.6e-26 Score=234.18 Aligned_cols=292 Identities=22% Similarity=0.286 Sum_probs=225.0
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS 83 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~ 83 (657)
++++.++|.+..+++|++|++++|.+++++....+++|++|++++|.+..++. |.++++|++|++++|.+..++. +.
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~ 129 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LA 129 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hc
Confidence 56778889999999999999999999988875589999999999999988764 7999999999999999998877 89
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~ 163 (657)
.+++|++|++++|.....+..++++++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+.|+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceee
Confidence 9999999999999878888889999999999999999998876 899999999999995 5667776 78999999999
Q ss_pred cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhccccc
Q 006185 164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKR 243 (657)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 243 (657)
+++|.+.. ...+..+++|+.|++++|.+..++....+++|+.|+++++.
T Consensus 206 l~~n~l~~-------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------------------ 254 (347)
T 4fmz_A 206 AYVNQITD-------------ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ------------------ 254 (347)
T ss_dssp CCSSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC------------------
T ss_pred cccCCCCC-------------CchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc------------------
Confidence 99986541 22278899999999999987666555556666666665431
Q ss_pred CcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccc
Q 006185 244 CSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLR 323 (657)
Q Consensus 244 ~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 323 (657)
+++. +.+ ..+++|++|++++| .+..++ ....++
T Consensus 255 -------------------------------------l~~~-~~~--~~l~~L~~L~l~~n-~l~~~~------~~~~l~ 287 (347)
T 4fmz_A 255 -------------------------------------ISDI-NAV--KDLTKLKMLNVGSN-QISDIS------VLNNLS 287 (347)
T ss_dssp -------------------------------------CCCC-GGG--TTCTTCCEEECCSS-CCCCCG------GGGGCT
T ss_pred -------------------------------------cCCC-hhH--hcCCCcCEEEccCC-ccCCCh------hhcCCC
Confidence 1111 111 23667777777777 444331 233477
Q ss_pred cccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185 324 KLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE 387 (657)
Q Consensus 324 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~ 387 (657)
+|+.|++++|. ++..... ..+.+++|++|++++|+ +++..| ...+++|++|++++++
T Consensus 288 ~L~~L~L~~n~-l~~~~~~--~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 288 QLNSLFLNNNQ-LGNEDME--VIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSC-CCGGGHH--HHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCEEECcCCc-CCCcChh--HhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 78888888775 2211100 12357888888888865 555444 2578888888888754
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.4e-26 Score=245.53 Aligned_cols=373 Identities=20% Similarity=0.180 Sum_probs=258.4
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCcccc-CCCC-CCCCCcEEEecCCcCc-CCCchhhcCCCCccEEEecCCcCCCC-
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEV-PDGL-ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKVLDLGGIRMVSP- 78 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~l- 78 (657)
++.+++++|. ..+++++|++++|.++.+ +..+ .+++|++|++++|.+. .+++..|.++++|++|++++|.++.+
T Consensus 18 ~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 18 INRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC
T ss_pred CCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC
Confidence 3567888887 348999999999999977 4444 8999999999999987 77777789999999999999999865
Q ss_pred CccccCCCCCcEEEccCCCCCC-CCc--ccCCCCCCCEEEeeCCCCCcc-ccc-ccCCCCCCEEEccCCCCCCCCchhHh
Q 006185 79 PSSLSFLSNLRTLRLDYCNHLP-DLS--LIGELSGLEILDLSKSDVNEI-PVS-FGRLSHLRLLDLTDCYNLELIPPGVL 153 (657)
Q Consensus 79 p~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~c~~~~~~~~~~~ 153 (657)
|..|+++++|++|++++|.... .|. .++++++|++|++++|.++.+ |.. ++++++|++|++++|. +..++...+
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDL 174 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTS
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhh
Confidence 7899999999999999998433 243 499999999999999999976 555 8999999999999965 444443336
Q ss_pred hcC--ccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCcc-CCCC----CCCCCccEEEEEEcCc
Q 006185 154 SRL--RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEI-MPSD----MSLPNLTSFSITIGEE 226 (657)
Q Consensus 154 ~~l--~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~----~~l~~L~~L~l~~~~~ 226 (657)
..+ .+|+.|+++++.+...... .........+..+++|+.|++++|.+.. .+.. ....+|+.|++.++..
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEY---WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTT---CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hccccccccccccccCcccccchh---hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 665 7899999998865421110 0000112234566899999999998632 2211 3346788887765421
Q ss_pred cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185 227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE 306 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~ 306 (657)
... .+....+.... . ..+..+ ..++|+.|+++++. +.+..+.. ...+++|++|++++| .
T Consensus 252 ~~~---------~~~~~~~~~~~--~-~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~ 310 (455)
T 3v47_A 252 MGS---------SFGHTNFKDPD--N-FTFKGL------EASGVKTCDLSKSK-IFALLKSV-FSHFTDLEQLTLAQN-E 310 (455)
T ss_dssp TSC---------CTTCCSSCCCC--T-TTTGGG------TTSCCCEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-C
T ss_pred ccc---------ccchhhhccCc--c-cccccc------cccCceEEEecCcc-ccccchhh-cccCCCCCEEECCCC-c
Confidence 110 00000000000 0 000000 01678889888873 34443332 235899999999999 5
Q ss_pred ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185 307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC 386 (657)
Q Consensus 307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c 386 (657)
+..++.. ....+++|++|++++|. ++.+.. ...+.+++|++|++++| .++.+.|..+ ..+++|++|+++++
T Consensus 311 l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N 381 (455)
T 3v47_A 311 INKIDDN----AFWGLTHLLKLNLSQNF-LGSIDS--RMFENLDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTN 381 (455)
T ss_dssp CCEECTT----TTTTCTTCCEEECCSSC-CCEECG--GGGTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred ccccChh----HhcCcccCCEEECCCCc-cCCcCh--hHhcCcccCCEEECCCC-cccccChhhc-cccccccEEECCCC
Confidence 6655443 23358999999999985 332211 11346899999999996 5666556554 67899999999995
Q ss_pred ccceeeeecccccccccccccCCcccEEecCCCc
Q 006185 387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLP 420 (657)
Q Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 420 (657)
.++.+. +..+..+++|+.|++++++
T Consensus 382 -~l~~~~--------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 382 -QLKSVP--------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -CCSCCC--------TTTTTTCTTCCEEECCSSC
T ss_pred -ccccCC--------HhHhccCCcccEEEccCCC
Confidence 444441 2335678999999999976
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.6e-26 Score=243.09 Aligned_cols=187 Identities=15% Similarity=0.092 Sum_probs=153.8
Q ss_pred CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185 11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT 90 (657)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~ 90 (657)
+.++.+++|++|++++|.++.+|....+++|++|++++|.+..++ |+.+++|++|++++|.++.++ ++++++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 356778999999999999998885448899999999999988875 688999999999999998875 889999999
Q ss_pred EEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 91 LRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 91 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
|++++|.....+ ++++++|++|++++|.++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence 999999844433 889999999999999998874 8899999999999987777774 678999999999988654
Q ss_pred cccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEc
Q 006185 171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 224 (657)
..+ ++.+++|+.|++++|.+..++ ...+++|+.|+++++
T Consensus 184 ------------~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 184 ------------ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSN 222 (457)
T ss_dssp ------------CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSS
T ss_pred ------------eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCC
Confidence 222 778889999999998876653 455677777777655
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2.3e-26 Score=241.63 Aligned_cols=333 Identities=20% Similarity=0.169 Sum_probs=220.3
Q ss_pred CCCCCCCCC-CCCCCCCccEEEccCCCcc-ccCCCC-CCCC-------------CcEEEecCCcCcCCCchhhcCCCCcc
Q 006185 3 AGVELKDWP-SINTFEDLTGISLMFNDIH-EVPDGL-ECPK-------------LQALFLQKNHLLVIPDPFFQGMKDLK 66 (657)
Q Consensus 3 ~~~~l~~~~-~~~~~~~L~~L~l~~~~~~-~l~~~~-~~~~-------------L~~L~l~~~~~~~~~~~~~~~l~~Lr 66 (657)
+++.+..+| +++.+++|++|++++|.+. .+|..+ .+++ +++|++++|.+..+|.. .++|+
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~ 94 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLE 94 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCS
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCC
Confidence 356677888 6999999999999999987 788776 6665 49999999999888872 48999
Q ss_pred EEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCC
Q 006185 67 VLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLE 146 (657)
Q Consensus 67 ~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~ 146 (657)
+|++++|.++.+|.. ..+|++|++++|.....+.. .++|++|++++|.++.+| .++++++|++|++++| .++
T Consensus 95 ~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~ 166 (454)
T 1jl5_A 95 SLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN-SLK 166 (454)
T ss_dssp EEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCS
T ss_pred EEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC-cCc
Confidence 999999999888864 47899999999984433322 279999999999999999 6999999999999995 566
Q ss_pred CCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCc
Q 006185 147 LIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEE 226 (657)
Q Consensus 147 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 226 (657)
.+|.. ..+|++|++++|.+. .. ..++.+++|+.|++++|.+..++.. .++|+.|+++++.-
T Consensus 167 ~lp~~----~~~L~~L~L~~n~l~------------~l-~~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 167 KLPDL----PPSLEFIAAGNNQLE------------EL-PELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNIL 227 (454)
T ss_dssp CCCCC----CTTCCEEECCSSCCS------------SC-CCCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC
T ss_pred ccCCC----cccccEEECcCCcCC------------cC-ccccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcC
Confidence 77753 359999999999764 22 3589999999999999998777655 35788888776532
Q ss_pred cChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCC
Q 006185 227 DTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNE 306 (657)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~ 306 (657)
...+.+ . .+++|+.|+++++ .++.+. . .+++|++|++++| .
T Consensus 228 ~~lp~~-------------------------------~-~l~~L~~L~l~~N-~l~~l~-~----~~~~L~~L~l~~N-~ 268 (454)
T 1jl5_A 228 EELPEL-------------------------------Q-NLPFLTTIYADNN-LLKTLP-D----LPPSLEALNVRDN-Y 268 (454)
T ss_dssp SSCCCC-------------------------------T-TCTTCCEEECCSS-CCSSCC-S----CCTTCCEEECCSS-C
T ss_pred Cccccc-------------------------------C-CCCCCCEEECCCC-cCCccc-c----cccccCEEECCCC-c
Confidence 221111 1 1256777777665 233222 1 2467777777777 4
Q ss_pred ceEEeeccccccccccccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc
Q 006185 307 MKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC 386 (657)
Q Consensus 307 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c 386 (657)
++.++.. +++|+.|+++++. ++.+ + ...++|+.|+++++ .++.+ +. ..++|++|+++++
T Consensus 269 l~~l~~~--------~~~L~~L~ls~N~-l~~l-----~-~~~~~L~~L~l~~N-~l~~i-~~----~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 269 LTDLPEL--------PQSLTFLDVSENI-FSGL-----S-ELPPNLYYLNASSN-EIRSL-CD----LPPSLEELNVSNN 327 (454)
T ss_dssp CSCCCCC--------CTTCCEEECCSSC-CSEE-----S-CCCTTCCEEECCSS-CCSEE-CC----CCTTCCEEECCSS
T ss_pred ccccCcc--------cCcCCEEECcCCc-cCcc-----c-CcCCcCCEEECcCC-cCCcc-cC----CcCcCCEEECCCC
Confidence 4443322 4677777777764 3221 1 12357777777774 34432 21 1246777777763
Q ss_pred ccceeeeecccccccccccccCCcccEEecCCCcCcccccCCCCcccccCCccEEEeccC
Q 006185 387 ELLVSVFEIERVNIAKEETELFSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVEEC 446 (657)
Q Consensus 387 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C 446 (657)
.++.+ +. .+++|+.|+++++ .++.++. .+++|++|+++++
T Consensus 328 -~l~~l---------p~---~~~~L~~L~L~~N-~l~~lp~------~l~~L~~L~L~~N 367 (454)
T 1jl5_A 328 -KLIEL---------PA---LPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYN 367 (454)
T ss_dssp -CCSCC---------CC---CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS
T ss_pred -ccccc---------cc---cCCcCCEEECCCC-ccccccc------hhhhccEEECCCC
Confidence 23322 22 2467777777775 4555432 2567777777775
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=7.4e-25 Score=230.39 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=126.8
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL 116 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 116 (657)
.+++|++|++++|.+..+|. |..+++|++|++++|+++.+| ++.+++|++|++++|.....+ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 67899999999999888873 689999999999999998886 889999999999999844433 889999999999
Q ss_pred eCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccE
Q 006185 117 SKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS 196 (657)
Q Consensus 117 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~ 196 (657)
++|.++.+| ++++++|++|++++| .++.++ ++++++|++|++++|.... .. .++.+++|+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~-----------~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT-----------KL--DVTPQTQLTT 174 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC-----------CC--CCTTCTTCCE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc-----------cc--ccccCCcCCE
Confidence 999998876 889999999999994 566664 6889999999998884321 12 4677888888
Q ss_pred EEeecCCCccCCCCCCCCCccEEEEE
Q 006185 197 LHIDIPKGEIMPSDMSLPNLTSFSIT 222 (657)
Q Consensus 197 L~l~~~~~~~~~~~~~l~~L~~L~l~ 222 (657)
|++++|.+..++ ...+++|+.|++.
T Consensus 175 L~ls~n~l~~l~-l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 175 LDCSFNKITELD-VSQNKLLNRLNCD 199 (457)
T ss_dssp EECCSSCCCCCC-CTTCTTCCEEECC
T ss_pred EECCCCccceec-cccCCCCCEEECc
Confidence 888888776654 3344555555544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-25 Score=227.76 Aligned_cols=154 Identities=14% Similarity=0.277 Sum_probs=125.1
Q ss_pred CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCE
Q 006185 36 LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEI 113 (657)
Q Consensus 36 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~ 113 (657)
..++++++|+++++.+..+|..+|.++++|++|++++|.++.++ ..+.++++|++|++++|..... |..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 36789999999999988999988899999999999999998765 4889999999999999985554 366899999999
Q ss_pred EEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCC
Q 006185 114 LDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS 192 (657)
Q Consensus 114 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~ 192 (657)
|++++|.++.+|.. ++++++|++|++++| .+..++...+.++++|++|++++|.+.. ..++.++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------~~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH--------------VDLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB--------------CCGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc--------------ccccccc
Confidence 99999999988877 588999999999995 4566665557888999999998886532 1245667
Q ss_pred CccEEEeecCCC
Q 006185 193 RLTSLHIDIPKG 204 (657)
Q Consensus 193 ~L~~L~l~~~~~ 204 (657)
+|+.|+++++..
T Consensus 187 ~L~~L~l~~n~l 198 (390)
T 3o6n_A 187 SLFHANVSYNLL 198 (390)
T ss_dssp TCSEEECCSSCC
T ss_pred ccceeecccccc
Confidence 777777776654
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=231.95 Aligned_cols=192 Identities=23% Similarity=0.233 Sum_probs=126.4
Q ss_pred ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCC
Q 006185 19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 97 (657)
-+.++.+++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3567777777777776542 4677777777777766655567777777777777777654 5677777777777777777
Q ss_pred CCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185 98 HLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES 175 (657)
Q Consensus 98 ~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g 175 (657)
....| ..++++++|++|++++|.++.+ |..+.++++|++|+++++ .+..++...+.++++|++|++++|.+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 166 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS---- 166 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc----
Confidence 44444 3467777777777777777744 445777777777777773 4444444446777777777777775432
Q ss_pred ccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEE
Q 006185 176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITI 223 (657)
Q Consensus 176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~ 223 (657)
.....+..+++|+.|++.+|.+..++.. ..+++|+.|++.+
T Consensus 167 -------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 167 -------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp -------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred -------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 2334566777777777777766554432 4455555555554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.5e-24 Score=229.55 Aligned_cols=208 Identities=26% Similarity=0.274 Sum_probs=171.6
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+.+++.+|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 20 RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp SCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 457788884 3357999999999999988643 4 89999999999999998866678999999999999999998886
Q ss_pred cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~ 158 (657)
.|.++++|++|++++|..... +..+.++++|++|++++|.++.+ |..+.++++|++|++++| .++.++...+.++++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence 578999999999999994443 57899999999999999999865 457999999999999995 677888777999999
Q ss_pred CcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEEEEc
Q 006185 159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSITIG 224 (657)
Q Consensus 159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~ 224 (657)
|+.|++++|.+.. .....+..+++|+.|+++++.. ..++.. ....+|+.|++.++
T Consensus 178 L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 178 LIVLRLRHLNINA-----------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CCEEEEESCCCCE-----------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CcEEeCCCCcCcE-----------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 9999999987643 3445688999999999999764 444443 33446777777654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=225.35 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=234.8
Q ss_pred CCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcE
Q 006185 14 NTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRT 90 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~ 90 (657)
..++++++|+++++.++.+|... .+++|++|++++|.+..++...|.++++|++|++++|.++.++ ..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35699999999999999999875 8999999999999999888877899999999999999998765 56899999999
Q ss_pred EEccCCCCCCCCcc-cCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185 91 LRLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF 168 (657)
Q Consensus 91 L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (657)
|++++|.....|.. ++++++|++|++++|.++.++. .++++++|++|++++| .++.++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccc
Confidence 99999996666654 6999999999999999997754 5999999999999994 566665 5789999999999885
Q ss_pred cccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceE
Q 006185 169 CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAM 248 (657)
Q Consensus 169 ~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 248 (657)
+. .+....+|+.|++++|.+..++.. ..++|+.|++.++.-...+.
T Consensus 198 l~----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~----------------- 243 (390)
T 3o6n_A 198 LS----------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAW----------------- 243 (390)
T ss_dssp CS----------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCCGG-----------------
T ss_pred cc----------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCcccHH-----------------
Confidence 43 234556899999999998777554 35789999988764322111
Q ss_pred EeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEE
Q 006185 249 GLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWL 328 (657)
Q Consensus 249 ~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 328 (657)
+.. +++|+.|+++++ .+++..+. ....+++|++|++++| .++.++... ..+++|+.|
T Consensus 244 --------------l~~-l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~l~~L~~L 300 (390)
T 3o6n_A 244 --------------LLN-YPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNLYG-----QPIPTLKVL 300 (390)
T ss_dssp --------------GGG-CTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEECSS-----SCCTTCCEE
T ss_pred --------------HcC-CCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCccc-----CCCCCCCEE
Confidence 111 267888888877 34444332 1235889999999998 677665543 248899999
Q ss_pred eccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185 329 FIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE 387 (657)
Q Consensus 329 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~ 387 (657)
++++|. ++.+.. ..+.+++|++|+++++. ++.+ + ...+++|++|++++++
T Consensus 301 ~L~~n~-l~~~~~---~~~~l~~L~~L~L~~N~-i~~~-~---~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 301 DLSHNH-LLHVER---NQPQFDRLENLYLDHNS-IVTL-K---LSTHHTLKNLTLSHND 350 (390)
T ss_dssp ECCSSC-CCCCGG---GHHHHTTCSEEECCSSC-CCCC-C---CCTTCCCSEEECCSSC
T ss_pred ECCCCc-ceecCc---cccccCcCCEEECCCCc-ccee-C---chhhccCCEEEcCCCC
Confidence 999885 432211 12367899999999965 5553 3 2467899999998843
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.1e-24 Score=231.37 Aligned_cols=154 Identities=14% Similarity=0.266 Sum_probs=128.2
Q ss_pred CCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCE
Q 006185 36 LECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEI 113 (657)
Q Consensus 36 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~ 113 (657)
..+.+++.++++++.+..+|..+|.++++|++|++++|.++.++ ..|+.+++|++|++++|.....+ ..++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 36789999999999999999999999999999999999998765 48999999999999999955554 56799999999
Q ss_pred EEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCC
Q 006185 114 LDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALS 192 (657)
Q Consensus 114 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~ 192 (657)
|++++|.++.+|.. ++++++|++|++++| .+..++...++++++|++|++++|.+.. . .++.++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~--~~~~l~ 192 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH------------V--DLSLIP 192 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB------------C--CGGGCT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC------------c--Chhhhh
Confidence 99999999999887 589999999999995 4566665558899999999999886532 1 255667
Q ss_pred CccEEEeecCCC
Q 006185 193 RLTSLHIDIPKG 204 (657)
Q Consensus 193 ~L~~L~l~~~~~ 204 (657)
+|+.|++++|.+
T Consensus 193 ~L~~L~l~~n~l 204 (597)
T 3oja_B 193 SLFHANVSYNLL 204 (597)
T ss_dssp TCSEEECCSSCC
T ss_pred hhhhhhcccCcc
Confidence 777777777654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.4e-23 Score=226.45 Aligned_cols=303 Identities=18% Similarity=0.219 Sum_probs=218.2
Q ss_pred CCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEE
Q 006185 15 TFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTL 91 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L 91 (657)
.+.+++.+++++|.++.+|... .+++|++|++++|.+..+++..|+.+++|++|++++|.++.+|. .|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4688999999999999999875 79999999999999998887778999999999999999987764 57999999999
Q ss_pred EccCCCCCCCCcc-cCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 92 RLDYCNHLPDLSL-IGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 92 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
++++|.....|.. ++++++|++|++++|.++.++. .++++++|++|++++| .+..++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcc
Confidence 9999996666654 6999999999999999997655 6999999999999995 566665 57899999999998854
Q ss_pred ccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEE
Q 006185 170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMG 249 (657)
Q Consensus 170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 249 (657)
. .+....+|+.|++++|.+..++... .++|+.|++.+
T Consensus 205 ~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~-------------------------- 241 (597)
T 3oja_B 205 S----------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQH-------------------------- 241 (597)
T ss_dssp S----------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCS--------------------------
T ss_pred c----------------cccCCchhheeeccCCccccccccc-CCCCCEEECCC--------------------------
Confidence 3 2445568999999998875554432 23455555443
Q ss_pred eecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEe
Q 006185 250 LSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLF 329 (657)
Q Consensus 250 l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 329 (657)
+. +++. +.+ ..+++|+.|++++| .+..++.. .+..+++|+.|+
T Consensus 242 ----------------------------n~-l~~~-~~l--~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~ 284 (597)
T 3oja_B 242 ----------------------------NN-LTDT-AWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQRLERLY 284 (597)
T ss_dssp ----------------------------SC-CCCC-GGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSSCCEEE
T ss_pred ----------------------------CC-CCCC-hhh--ccCCCCCEEECCCC-ccCCCCHH----HhcCccCCCEEE
Confidence 31 1111 111 24677888888887 45544332 223477888888
Q ss_pred ccccccccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccccceeeeecccccccccccccCC
Q 006185 330 IRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEETELFS 409 (657)
Q Consensus 330 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 409 (657)
++++. ++.+. ...+.+++|+.|++++|. +.. +|..+ ..+++|++|+++++. +..+ .+..++
T Consensus 285 Ls~N~-l~~l~---~~~~~l~~L~~L~Ls~N~-l~~-i~~~~-~~l~~L~~L~L~~N~-l~~~-----------~~~~~~ 345 (597)
T 3oja_B 285 ISNNR-LVALN---LYGQPIPTLKVLDLSHNH-LLH-VERNQ-PQFDRLENLYLDHNS-IVTL-----------KLSTHH 345 (597)
T ss_dssp CTTSC-CCEEE---CSSSCCTTCCEEECCSSC-CCC-CGGGH-HHHTTCSEEECCSSC-CCCC-----------CCCTTC
T ss_pred CCCCC-CCCCC---cccccCCCCcEEECCCCC-CCc-cCccc-ccCCCCCEEECCCCC-CCCc-----------ChhhcC
Confidence 88764 33221 112357788888888754 444 34433 567777777777753 2221 134456
Q ss_pred cccEEecCCCc
Q 006185 410 SLEKLTLIDLP 420 (657)
Q Consensus 410 ~L~~L~l~~c~ 420 (657)
+|+.|++++++
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 66666666654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=9.1e-23 Score=206.27 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=77.4
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~ 96 (657)
++++++++++.++.+|... .++|++|++++|.+..+++..|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4556666666655555443 24556666666655555444455666666666666655543 445555666666666665
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCC-CCchhHhhcCccCcEEEcccCcc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLE-LIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
.....|..+. ++|++|++++|.++.+|.. +.++++|++|++++|.... ......+..+ +|++|++++|.+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 5333443333 5566666666555555443 5555566666655532210 1111213344 555555555543
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=4.8e-22 Score=200.84 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~ 96 (657)
++++++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45555555555555554332 3455555555555555544445555555555555555443 444555555555555555
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccC
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTD 141 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 141 (657)
.....|..+. ++|++|++++|.++.++. .+.++++|++|++++
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC
Confidence 4333333322 445555555554444333 244455555555544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=5.1e-22 Score=200.66 Aligned_cols=201 Identities=21% Similarity=0.296 Sum_probs=160.9
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+.+++++|. ...+.+++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|+++++|..
T Consensus 40 ~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 118 (330)
T 1xku_A 40 DLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118 (330)
T ss_dssp TSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence 346677774 2347999999999999988874 3 899999999999999988666689999999999999999999887
Q ss_pred ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
+. ++|++|++++|.....+ ..++++++|++|++++|.++ ..+..+.++++|++|++++ +.++.+|.. + .+
T Consensus 119 ~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~ 192 (330)
T 1xku_A 119 MP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PP 192 (330)
T ss_dssp CC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CT
T ss_pred hc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cc
Confidence 75 79999999999855444 56899999999999999887 4566799999999999999 457778865 2 38
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEE
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSIT 222 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~ 222 (657)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.. ..+++|+.|+++
T Consensus 193 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 193 SLTELHLDGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp TCSEEECTTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred cCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 99999999997642 4456788899999999999887555432 333444444443
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=9.2e-25 Score=239.78 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCCCccEEEecCCcCCC-CCccccC-C-CCCcEEEccCCCCCCC---CcccCCCCCCCEEEeeCCCCCc-----cccccc
Q 006185 61 GMKDLKVLDLGGIRMVS-PPSSLSF-L-SNLRTLRLDYCNHLPD---LSLIGELSGLEILDLSKSDVNE-----IPVSFG 129 (657)
Q Consensus 61 ~l~~Lr~L~L~~~~~~~-lp~~~~~-l-~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~ 129 (657)
.+++|++|+++++.++. .+..+.. + .+|++|++++|..... +..+.++++|++|++++|.++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 55666666666665532 2233333 2 2366666666552211 1222355666666666665431 222344
Q ss_pred CCCCCCEEEccCCCCC----CCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeec
Q 006185 130 RLSHLRLLDLTDCYNL----ELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDI 201 (657)
Q Consensus 130 ~l~~L~~L~l~~c~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~ 201 (657)
.+++|++|+++++... ..++. .+.++++|++|++++|.+. ..+..+..+++|+.|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence 5566666666653321 11121 1345666666666665432 2334455566666666654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4.5e-22 Score=201.17 Aligned_cols=187 Identities=24% Similarity=0.297 Sum_probs=154.1
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+.+++.+|.. ..+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|..
T Consensus 42 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 120 (332)
T 2ft3_A 42 DLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120 (332)
T ss_dssp SSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred CCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence 4567777742 35799999999999998865 34 899999999999999988777789999999999999999999987
Q ss_pred ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCC---cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVN---EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
+. ++|++|++++|.....+ ..++++++|++|++++|.++ ..|..+..+ +|++|++++ +.++.+|.. + .+
T Consensus 121 ~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~--~~ 193 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-L--PE 193 (332)
T ss_dssp CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-S--CS
T ss_pred cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-c--cC
Confidence 76 89999999999955555 56899999999999999986 446667777 999999999 457778865 3 27
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCC
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPS 209 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 209 (657)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.
T Consensus 194 ~L~~L~l~~n~i~~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 194 TLNELHLDHNKIQA-----------IELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp SCSCCBCCSSCCCC-----------CCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCEEECCCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 89999999987642 344567888899999999888755544
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=7.4e-24 Score=232.56 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=102.7
Q ss_pred EEEecCCcCcCCCchhhcCCCCccEEEecCCcC----CCCCcccc------------CCCCCcEEEccCCCCCCC--Ccc
Q 006185 43 ALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM----VSPPSSLS------------FLSNLRTLRLDYCNHLPD--LSL 104 (657)
Q Consensus 43 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~----~~lp~~~~------------~l~~L~~L~l~~~~~~~~--~~~ 104 (657)
.+.+.++ +...+..++..+++|++|+++++.. ..+|..++ ++++|++|++++|. +++ +..
T Consensus 54 ~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDR 131 (592)
T ss_dssp EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHH
T ss_pred EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHH
Confidence 3444433 2345566678888899999988632 22333332 67888888888875 432 344
Q ss_pred cCCC--CCCCEEEeeCCC-CC--cccccccCCCCCCEEEccCCCCCCC----CchhHhhcCccCcEEEcccCcccccccc
Q 006185 105 IGEL--SGLEILDLSKSD-VN--EIPVSFGRLSHLRLLDLTDCYNLEL----IPPGVLSRLRKLEELYMSHSFCHWQFES 175 (657)
Q Consensus 105 ~~~l--~~L~~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~c~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~g 175 (657)
+++. .+|++|++++|. ++ .++..+.++++|++|++++|..... ++. ....+++|++|+++++.+....
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~-- 208 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKIS-- 208 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCC--
T ss_pred HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccC--
Confidence 4443 348888888875 22 3334445778888888888643222 222 2567788888888777543100
Q ss_pred ccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEE
Q 006185 176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITI 223 (657)
Q Consensus 176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~ 223 (657)
.......+.++++|+.|++.++....++.. ..+++|++|.+..
T Consensus 209 -----~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 209 -----PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp -----HHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred -----HHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 013344456677888888877765544433 4456777777654
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=4.3e-22 Score=200.27 Aligned_cols=218 Identities=20% Similarity=0.270 Sum_probs=169.5
Q ss_pred CCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185 16 FEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD 94 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~ 94 (657)
.+.+++|++++|.++.+|..+ .+++|++|++++|.+..+|.. |+++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 478889999999888888876 788899999999888888776 488899999999999888888888899999999998
Q ss_pred CCCCCC-CCcccC---------CCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 95 YCNHLP-DLSLIG---------ELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 95 ~~~~~~-~~~~~~---------~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
+|.... .|..++ ++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++++++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEEC
Confidence 876443 455544 488899999999988888888888999999999884 56677776 788899999999
Q ss_pred ccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhcccc
Q 006185 165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFNK 242 (657)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (657)
++|.+.. ..+..++.+++|+.|++++|.. +.+|.. ..+++|+.|+++++. ..+.+++.+..
T Consensus 237 s~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~------~~~~iP~~l~~ 299 (328)
T 4fcg_A 237 RGCTALR-----------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV------NLSRLPSLIAQ 299 (328)
T ss_dssp TTCTTCC-----------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT------TCCCCCGGGGG
T ss_pred cCCcchh-----------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC------chhhccHHHhh
Confidence 8876542 5566788888899999988764 556655 677888888888653 23333444433
Q ss_pred -cCcceEEeecc
Q 006185 243 -RCSRAMGLSQD 253 (657)
Q Consensus 243 -~~l~~l~l~~~ 253 (657)
+.++.+.+..+
T Consensus 300 L~~L~~l~l~~~ 311 (328)
T 4fcg_A 300 LPANCIILVPPH 311 (328)
T ss_dssp SCTTCEEECCGG
T ss_pred ccCceEEeCCHH
Confidence 66777776653
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=202.30 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=145.7
Q ss_pred CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEE
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTL 91 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L 91 (657)
...|+...+.+++++.++.+|.... ++|++|++++|.+..++...|.++++|++|++++|.++.+ |..|+++++|++|
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4445666667788888888876543 4788888888887777776678888888888888887765 4567788888888
Q ss_pred EccCCCCCCCCc-ccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCc
Q 006185 92 RLDYCNHLPDLS-LIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSF 168 (657)
Q Consensus 92 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~ 168 (657)
++++|.....+. .++++++|++|++++|.++.+|. .+.++++|++|++++|..++.++...+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888887555553 37788888888888888887776 577888888888888656666655557778888888888776
Q ss_pred cccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185 169 CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE 225 (657)
Q Consensus 169 ~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 225 (657)
+.. ..+..++.+++|++|++++|....++.. ..+++|+.|+++++.
T Consensus 186 l~~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 186 LQS-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CCE-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred cCc-----------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 542 3456677778888888888776555543 346778888887653
No 49
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=4.7e-24 Score=234.31 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCC
Q 006185 490 SLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPT 530 (657)
Q Consensus 490 ~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 530 (657)
.+++|+.|++++|+. ++......+..+++|++|++++|+.
T Consensus 479 ~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 356666666666654 3322223344566666666666653
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.7e-22 Score=198.83 Aligned_cols=203 Identities=22% Similarity=0.337 Sum_probs=94.6
Q ss_pred CCCCCCC-CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC-CCCCccc
Q 006185 6 ELKDWPS-INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM-VSPPSSL 82 (657)
Q Consensus 6 ~l~~~~~-~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~-~~lp~~~ 82 (657)
++..+|. +..+++|++|++++|.++.+|..+ .+++|++|++++|.+..+|.. |.++++|++|++++|++ ..+|..+
T Consensus 92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhH
Confidence 3334442 444455555555555554444433 445555555555544444443 34455555555555432 3344433
Q ss_pred cC---------CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHh
Q 006185 83 SF---------LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVL 153 (657)
Q Consensus 83 ~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~ 153 (657)
.. +++|++|++++|.....|..++++++|++|++++|.++.+|..++++++|++|++++|...+.+|.. +
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~ 249 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-F 249 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-T
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-h
Confidence 32 4555555555554333444455555555555555555555444555555555555554444444443 4
Q ss_pred hcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC-ccCCCC-CCCCCccEEEE
Q 006185 154 SRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG-EIMPSD-MSLPNLTSFSI 221 (657)
Q Consensus 154 ~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~l~~L~~L~l 221 (657)
+.+++|++|++++|.... ..+..++.+++|+.|++++|.. +.+|.. ..+++|+.+.+
T Consensus 250 ~~l~~L~~L~L~~n~~~~-----------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLL-----------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCCCCCEEECTTCTTCC-----------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred cCCCCCCEEECCCCCchh-----------hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 445555555555443221 3333444455555555554432 333333 34444444443
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=2.2e-21 Score=191.65 Aligned_cols=208 Identities=25% Similarity=0.323 Sum_probs=145.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc-CCCC-C
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR-MVSP-P 79 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-~~~l-p 79 (657)
+.+++.+|. ...+++++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|++++|. ++.+ |
T Consensus 20 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 20 QQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 345666663 34567788888888777766432 67778888888777776655556777888888888776 6665 5
Q ss_pred ccccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
..+..+++|++|++++|..... +..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...+.+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 6677778888888887774443 45677778888888888777766654 677778888888773 55666665567777
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG 224 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~ 224 (657)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.. ..+++|+.|++.++
T Consensus 178 ~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 178 SLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 88888887776542 3355667777788888877777655543 55677777777655
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6.4e-22 Score=197.80 Aligned_cols=174 Identities=20% Similarity=0.284 Sum_probs=127.0
Q ss_pred CCccEEEccCCCcc---ccCCCC-CCCCCcEEEecC-CcCc-CCCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCc
Q 006185 17 EDLTGISLMFNDIH---EVPDGL-ECPKLQALFLQK-NHLL-VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLR 89 (657)
Q Consensus 17 ~~L~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~ 89 (657)
.++++|++++|.++ .+|..+ .+++|++|++++ |.+. .+|.. |+++++|++|++++|.++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 56788888888876 466655 778888888874 6666 45554 578888888888888876 6777788888888
Q ss_pred EEEccCCCCC-CCCcccCCCCCCCEEEeeCCCCC-cccccccCCC-CCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 90 TLRLDYCNHL-PDLSLIGELSGLEILDLSKSDVN-EIPVSFGRLS-HLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 90 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
+|++++|... ..|..++++++|++|++++|.++ .+|..+++++ +|++|++++|...+.+|.. +..+. |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 8888888744 35677788888888888888877 7777788877 7888888885544456655 66776 88888877
Q ss_pred CccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
|.+.. ..+..+..+++|+.|++++|.+
T Consensus 207 N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 207 NMLEG-----------DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp SEEEE-----------CCGGGCCTTSCCSEEECCSSEE
T ss_pred CcccC-----------cCCHHHhcCCCCCEEECCCCce
Confidence 75532 4455667777777777777765
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=7.5e-21 Score=200.03 Aligned_cols=197 Identities=24% Similarity=0.325 Sum_probs=146.6
Q ss_pred CCCCCCC-CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185 11 PSINTFE-DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL 88 (657)
Q Consensus 11 ~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L 88 (657)
|..+.+. ..+.++.++..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.++.++ ..|.++++|
T Consensus 36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 36 PSVCSCSNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp CSSSEECTTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCCEeCCCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 4444453 46778888888888887654 67888888888888777667888888999999888887655 678888888
Q ss_pred cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
++|++++|.....+ ..+.++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 88888888855554 468888888888888888887765 4788888888888888888888776678888888888888
Q ss_pred CccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEE
Q 006185 167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSI 221 (657)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l 221 (657)
|.+. .+..+..+++|+.|++++|.+..++.. ..+++|+.|++
T Consensus 195 n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 195 CNLR-------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp SCCS-------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCc-------------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence 8653 123467777788888877776544322 33444444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=195.66 Aligned_cols=262 Identities=19% Similarity=0.212 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS 80 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 80 (657)
++++++++|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 4567888885 3347999999999999988873 3 89999999999999998877778999999999999999999887
Q ss_pred c-ccCCCCCcEEEccCCCCCCCCc--ccCCCCCCCEEEeeCC-CCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhc
Q 006185 81 S-LSFLSNLRTLRLDYCNHLPDLS--LIGELSGLEILDLSKS-DVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSR 155 (657)
Q Consensus 81 ~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~ 155 (657)
. ++++++|++|++++|.....|. .++++++|++|++++| .++.+ |..++++++|++|++++|. +..++...+.+
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhc
Confidence 6 8999999999999998555554 7899999999999999 47766 4569999999999999965 44553334899
Q ss_pred CccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-----CCCCCccEEEEEEcCccChh
Q 006185 156 LRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-----MSLPNLTSFSITIGEEDTLN 230 (657)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~ 230 (657)
+++|++|++++|.+.. .....+..+++|+.|++++|.+..++.. .....++.+++....
T Consensus 197 l~~L~~L~l~~n~l~~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~----- 260 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL-----------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK----- 260 (353)
T ss_dssp CSEEEEEEEECSCSTT-----------HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-----
T ss_pred cccCCeecCCCCcccc-----------chhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-----
Confidence 9999999999987531 1222345689999999999987655432 234566667666431
Q ss_pred hHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCC
Q 006185 231 DFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCN 305 (657)
Q Consensus 231 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~ 305 (657)
+.+ ..+..+|+++... ++|+.|+++++ .++.+.+.. ...+++|++|++++|+
T Consensus 261 -------------------l~~-~~l~~l~~~l~~l-~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 261 -------------------ITD-ESLFQVMKLLNQI-SGLLELEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -------------------CCH-HHHHHHHHHHHTC-TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred -------------------ccC-cchhhhHHHHhcc-cCCCEEECCCC-CCCccCHHH-HhcCCCCCEEEeeCCC
Confidence 111 1344567666654 89999999988 455444332 2458999999999994
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=9.1e-21 Score=200.12 Aligned_cols=183 Identities=25% Similarity=0.288 Sum_probs=135.9
Q ss_pred CCCCCCC-CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCC
Q 006185 11 PSINTFE-DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNL 88 (657)
Q Consensus 11 ~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L 88 (657)
|..+.+. ..+.++.++..++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.++ ..|.++++|
T Consensus 47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 47 PSVCSCSNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp CTTSEECSSSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEECCCCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC
Confidence 3344443 45678888888888886543 57888888888888776666788888888888888887654 678888888
Q ss_pred cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
++|++++|.....+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|++|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 88888888854444 457888888888888888887765 4788888888888888888888776677888888888887
Q ss_pred CccccccccccccccccchhhhcCCCCccEEEeecCCCccC
Q 006185 167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIM 207 (657)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 207 (657)
|.+. ....+..+++|+.|++++|.+..+
T Consensus 206 n~l~-------------~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 206 CNIK-------------DMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCS-------------SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred Cccc-------------ccccccccccccEEECcCCcCccc
Confidence 7653 123466667777777777665433
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.5e-19 Score=195.44 Aligned_cols=256 Identities=19% Similarity=0.188 Sum_probs=174.8
Q ss_pred CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185 17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~ 96 (657)
.++++|++++|.++.+|.... ++|++|++++|.+..+|. .+++|++|++++|+++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 468888888888888887655 788888888888887776 46888888888888888887 6788888888888
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE 176 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~ 176 (657)
.....|. .+.+|++|++++|.++.+|.. +++|++|++++| .++.+|. ...+|+.|++++|.+.
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~------ 174 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLT------ 174 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS------
T ss_pred cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCC------
Confidence 8444444 567888888888888888764 478888888884 5556653 3467888888877653
Q ss_pred cccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccch
Q 006185 177 EDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRI 256 (657)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 256 (657)
..+ ..+++|+.|++++|.+..++.. +++|+.|++.+
T Consensus 175 ------~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~--------------------------------- 210 (622)
T 3g06_A 175 ------SLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYN--------------------------------- 210 (622)
T ss_dssp ------CCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCS---------------------------------
T ss_pred ------CCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcC---------------------------------
Confidence 222 3456777788777776655543 34455444433
Q ss_pred hhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccc
Q 006185 257 SALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNF 336 (657)
Q Consensus 257 ~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 336 (657)
+ .++.+. ..+++|+.|++++| .++.++. .+++|+.|++++|. +
T Consensus 211 ---------------------N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~lp~--------~l~~L~~L~Ls~N~-L 253 (622)
T 3g06_A 211 ---------------------N-RLTSLP-----ALPSGLKELIVSGN-RLTSLPV--------LPSELKELMVSGNR-L 253 (622)
T ss_dssp ---------------------S-CCSSCC-----CCCTTCCEEECCSS-CCSCCCC--------CCTTCCEEECCSSC-C
T ss_pred ---------------------C-cccccC-----CCCCCCCEEEccCC-ccCcCCC--------CCCcCcEEECCCCC-C
Confidence 2 112111 12467777777777 5554442 26778888888774 3
Q ss_pred cccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEcccc
Q 006185 337 VEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESCE 387 (657)
Q Consensus 337 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c~ 387 (657)
+ .+|. .+++|+.|++++| .++. +|..+ ..+++|+.|++++++
T Consensus 254 ~-----~lp~-~~~~L~~L~Ls~N-~L~~-lp~~l-~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 254 T-----SLPM-LPSGLLSLSVYRN-QLTR-LPESL-IHLSSETTVNLEGNP 295 (622)
T ss_dssp S-----CCCC-CCTTCCEEECCSS-CCCS-CCGGG-GGSCTTCEEECCSCC
T ss_pred C-----cCCc-ccccCcEEeCCCC-CCCc-CCHHH-hhccccCEEEecCCC
Confidence 2 2333 5677888888885 4554 45443 577788888887753
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3.8e-23 Score=227.05 Aligned_cols=393 Identities=15% Similarity=0.070 Sum_probs=203.2
Q ss_pred CCCCCCCEEEeeCCCCC-ccccccc-CCCCCCEEEccCCCCCCCC-chhHhhcCccCcEEEcccCccccccccccccccc
Q 006185 106 GELSGLEILDLSKSDVN-EIPVSFG-RLSHLRLLDLTDCYNLELI-PPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSN 182 (657)
Q Consensus 106 ~~l~~L~~L~l~~~~i~-~lp~~i~-~l~~L~~L~l~~c~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~ 182 (657)
..+++|++|+++++.++ ..+..+. .+++|++|++++|..++.. ......++++|++|++++|.+.... ..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-------~~ 174 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-------GH 174 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-------GG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-------hH
Confidence 35667777777777666 2333443 5777888888777544431 1222446778888887777543100 00
Q ss_pred cchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHH
Q 006185 183 AKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSW 262 (657)
Q Consensus 183 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~ 262 (657)
........+++|+.|+++++. ..+.. ..+ ..+.. ..+.++.+++.++..+..++..
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~-~~~~~--------------------~~l-~~l~~--~~~~L~~L~L~~~~~~~~l~~~ 230 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLA-SEVSF--------------------SAL-ERLVT--RCPNLKSLKLNRAVPLEKLATL 230 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCC-SCCCH--------------------HHH-HHHHH--HCTTCCEEECCTTSCHHHHHHH
T ss_pred HHHHHhhcCCcCcEEEecccC-CcCCH--------------------HHH-HHHHH--hCCCCcEEecCCCCcHHHHHHH
Confidence 112222355566666666553 11110 000 00000 1245555555555455556655
Q ss_pred HHHHHccccEEEEeeccc------cccccccccccccccceEE-EeecCCCceEEeeccccccccccccccEEecccccc
Q 006185 263 IKNLLLRSEILALIEVND------LENIFSNLANDDFNELMFL-YIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQN 335 (657)
Q Consensus 263 ~~~~~~~L~~L~L~~~~~------l~~~~~~l~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (657)
+... ++|+.|.+..+.. +....+.+ ..+++|+.| .+.+.. ...++. ....+++|++|++++|.
T Consensus 231 ~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l--~~~~~L~~Ls~~~~~~-~~~l~~-----~~~~~~~L~~L~L~~~~- 300 (594)
T 2p1m_B 231 LQRA-PQLEELGTGGYTAEVRPDVYSGLSVAL--SGCKELRCLSGFWDAV-PAYLPA-----VYSVCSRLTTLNLSYAT- 300 (594)
T ss_dssp HHHC-TTCSEEECSBCCCCCCHHHHHHHHHHH--HTCTTCCEEECCBTCC-GGGGGG-----GHHHHTTCCEEECTTCC-
T ss_pred HhcC-CcceEcccccccCccchhhHHHHHHHH--hcCCCcccccCCcccc-hhhHHH-----HHHhhCCCCEEEccCCC-
Confidence 5554 8888888766532 11122111 245666666 222221 000000 11246788888888876
Q ss_pred ccccccccCCCCCCCCccEEEEecCCCcccccchhHHHhcccCcEEEEccc--------ccceeeeeccccccccccccc
Q 006185 336 FVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPSHLVQSFQNLQRLMVESC--------ELLVSVFEIERVNIAKEETEL 407 (657)
Q Consensus 336 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~~~~~L~~L~l~~c--------~~l~~~~~~~~~~~~~~~~~~ 407 (657)
+++..... -...+++|++|++++| +.+.....+...+++|++|++.+| ..++.. +. ..-...
T Consensus 301 l~~~~l~~-~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l---~~l~~~ 370 (594)
T 2p1m_B 301 VQSYDLVK-LLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ----GL---VSVSMG 370 (594)
T ss_dssp CCHHHHHH-HHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----HH---HHHHHH
T ss_pred CCHHHHHH-HHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH----HH---HHHHHh
Confidence 43211000 0235788888888887 333233334456788888888543 222211 00 011123
Q ss_pred CCcccEEecCCCcCcccccCCCCcccccCCccEEEec-----cCccccccccc-ccccccchhhhhhhcccccceeeccc
Q 006185 408 FSSLEKLTLIDLPRMTDIWKGDTQFVSLHNLKKVRVE-----ECDELRQVFPA-NLGKKAAAEEMVLYRNRRYQIHIHAT 481 (657)
Q Consensus 408 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~-----~C~~L~~~~~~-~l~~~~~L~~l~l~~~~~l~~~~~~~ 481 (657)
+++|+.|.+ +|..++.... ......+++|++|++. +|..++..+.. .+ ..
T Consensus 371 ~~~L~~L~~-~~~~l~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~------~~---------------- 426 (594)
T 2p1m_B 371 CPKLESVLY-FCRQMTNAAL-ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF------GA---------------- 426 (594)
T ss_dssp CTTCCEEEE-EESCCCHHHH-HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH------HH----------------
T ss_pred chhHHHHHH-hcCCcCHHHH-HHHHhhCCCcceeEeecccCCCcccccCCchhhHH------HH----------------
Confidence 677777743 4555554210 0001136777788777 56666543110 00 00
Q ss_pred ccCCCCCCCCCCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeE
Q 006185 482 TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIK 561 (657)
Q Consensus 482 ~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~ 561 (657)
-+..+++|++|++++ ++++.....+...+++|+.|++++|. +... +...+. ..+++|+.|+
T Consensus 427 -----l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~-----~~~~l~------~~~~~L~~L~ 487 (594)
T 2p1m_B 427 -----IVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL-----GMHHVL------SGCDSLRKLE 487 (594)
T ss_dssp -----HHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH-----HHHHHH------HHCTTCCEEE
T ss_pred -----HHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH-----HHHHHH------hcCCCcCEEE
Confidence 012567888888866 56554444444457888888888876 3211 111111 1478888888
Q ss_pred cCcCCCccccccCCCcceeeccccceeeeccCCC
Q 006185 562 LCDLGSLTCFSSSGLHATVEFLALEALQIIDCPG 595 (657)
Q Consensus 562 l~~c~~l~~l~~~~~~~~~~~~sL~~L~i~~C~~ 595 (657)
+++|+. +........ ..+++|++|++++|+.
T Consensus 488 L~~n~~-~~~~~~~~~--~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRDCPF-GDKALLANA--SKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCSC-CHHHHHHTG--GGGGGSSEEEEESSCC
T ss_pred CcCCCC-cHHHHHHHH--HhCCCCCEEeeeCCCC
Confidence 888875 432201111 1468888888888876
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.9e-20 Score=184.81 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=163.5
Q ss_pred ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCC
Q 006185 19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 97 (657)
-++++.+.+.++.+|... .++|++|++++|.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 378999999999998754 46999999999999988887789999999999999999876 7789999999999999997
Q ss_pred -CCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185 98 -HLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE 174 (657)
Q Consensus 98 -~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (657)
.... +..+.++++|++|++++|.++.+ |..+.++++|++|++++ +.++.++...++++++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 167 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS--- 167 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE---
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccc---
Confidence 4444 57899999999999999999977 55689999999999999 45677777668899999999999997642
Q ss_pred cccccccccchhhhcCCCCccEEEeecCCCccCC-CC-CCCCCccEEEEEEc
Q 006185 175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP-SD-MSLPNLTSFSITIG 224 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~-~~l~~L~~L~l~~~ 224 (657)
.....+..+++|+.|++++|.+..+. .. ..+++|+.|+++++
T Consensus 168 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 168 --------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp --------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 23345888999999999999986653 33 56788888888765
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2.6e-21 Score=193.34 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=139.3
Q ss_pred CCCcEEEecCCcCcC---CCchhhcCCCCccEEEecC-CcCC-CCCccccCCCCCcEEEccCCCCC-CCCcccCCCCCCC
Q 006185 39 PKLQALFLQKNHLLV---IPDPFFQGMKDLKVLDLGG-IRMV-SPPSSLSFLSNLRTLRLDYCNHL-PDLSLIGELSGLE 112 (657)
Q Consensus 39 ~~L~~L~l~~~~~~~---~~~~~~~~l~~Lr~L~L~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~ 112 (657)
.++++|+++++.+.. +|.. |.++++|++|++++ +.+. .+|..|+++++|++|++++|... ..|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999884 6665 68999999999995 7764 78999999999999999999854 4678899999999
Q ss_pred EEEeeCCCCC-cccccccCCCCCCEEEccCCCCCCCCchhHhhcCc-cCcEEEcccCccccccccccccccccchhhhcC
Q 006185 113 ILDLSKSDVN-EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR-KLEELYMSHSFCHWQFESEEDTRSNAKFIELGA 190 (657)
Q Consensus 113 ~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~ 190 (657)
+|++++|.++ .+|..+.++++|++|++++|...+.+|.. ++++. +|++|++++|.+.. ..+..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-----------~~~~~~~~ 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG-----------KIPPTFAN 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE-----------ECCGGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec-----------cCChHHhC
Confidence 9999999988 78889999999999999996554478877 88887 99999999986642 45666777
Q ss_pred CCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185 191 LSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG 224 (657)
Q Consensus 191 l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~ 224 (657)
++ |+.|++++|.+...... ..+++|+.|+++++
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 76 99999998876433322 45566666666544
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=3.9e-21 Score=191.96 Aligned_cols=192 Identities=23% Similarity=0.244 Sum_probs=138.1
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC---CccccCCCCCcEEEccCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP---PSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l---p~~~~~l~~L~~L~l~~~ 96 (657)
+.++++++.++.+|.... ++|++|++++|.+..+|..+|.++++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 567888888888876543 5788888888888888877778888888888888877644 566667888888888888
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE 174 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (657)
.....|..+.++++|++|++++|.++.++. .+.++++|++|++++|. +...+...+.++++|++|++++|.+..
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 164 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE--- 164 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG---
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc---
Confidence 755566678888888888888888777664 57788888888888854 444443447778888888888875531
Q ss_pred cccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEE
Q 006185 175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITI 223 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~ 223 (657)
...+..+..+++|+.|++++|.+..++.. ..+++|+.|++++
T Consensus 165 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 165 -------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp -------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred -------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 02455677778888888888877555322 4455566555543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=195.93 Aligned_cols=206 Identities=25% Similarity=0.307 Sum_probs=171.6
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+.+++.+|. ...+++++|++++|.++.++... .+++|++|++++|.+..++...|.++++|++|++++|+++.+|.
T Consensus 52 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 52 RKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred CCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 456778884 23489999999999999887543 89999999999999998888889999999999999999998876
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.|..+++|++|++++|.....+ ..+.++++|++|+++++ .+..++. .+.++++|++|++++ +.++.+|. +..++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~ 207 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTPLI 207 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTTCS
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCCCc
Confidence 6899999999999999955444 57899999999999995 5677766 589999999999999 46778885 89999
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG 224 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~ 224 (657)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.. ..+++|+.|+++++
T Consensus 208 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 208 KLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp SCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred ccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 99999999997653 4467789999999999999998666544 45566666665543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2.8e-20 Score=196.42 Aligned_cols=206 Identities=24% Similarity=0.279 Sum_probs=170.3
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+.+++.+|. ...+++++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|+|++|+++.+|.
T Consensus 63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 456777874 2347999999999999987544 3 89999999999999998887778999999999999999998775
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.+.++++|++|++++|.....+ ..+.++++|++|+++++ .++.+|. .+.++++|++|++++ +.++.+|. +..++
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~ 218 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPLV 218 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTCT
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--ccccc
Confidence 4889999999999999955444 57899999999999995 5777776 489999999999999 46777875 78999
Q ss_pred cCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEc
Q 006185 158 KLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIG 224 (657)
Q Consensus 158 ~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~ 224 (657)
+|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.. ..+++|+.|+++++
T Consensus 219 ~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 219 GLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp TCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 99999999997653 4567789999999999999988665443 45566666666544
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.5e-20 Score=186.08 Aligned_cols=230 Identities=22% Similarity=0.212 Sum_probs=182.1
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCC---CchhhcCCCCccEEEecCCcCCCC
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVI---PDPFFQGMKDLKVLDLGGIRMVSP 78 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~~~~l 78 (657)
+.+++++|. ...+++++|++++|.++.+|... .+++|++|++++|.+..+ +.. +..+++|++|++++|.+..+
T Consensus 16 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEE
T ss_pred CCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccC
Confidence 456788884 34589999999999999998864 899999999999998744 344 56899999999999999999
Q ss_pred CccccCCCCCcEEEccCCCCCCCC--cccCCCCCCCEEEeeCCCCCc-ccccccCCCCCCEEEccCCCCCC-CCchhHhh
Q 006185 79 PSSLSFLSNLRTLRLDYCNHLPDL--SLIGELSGLEILDLSKSDVNE-IPVSFGRLSHLRLLDLTDCYNLE-LIPPGVLS 154 (657)
Q Consensus 79 p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~~~-~~~~~~~~ 154 (657)
|..+..+++|++|++++|.....+ ..+.++++|++|++++|.++. .|..+.++++|++|++++|...+ .+|.. +.
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~ 172 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FT 172 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CT
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hh
Confidence 999999999999999999854444 578999999999999999884 45668999999999999965443 24554 88
Q ss_pred cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcCccChhhH
Q 006185 155 RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGEEDTLNDF 232 (657)
Q Consensus 155 ~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~ 232 (657)
.+++|++|++++|.+.. ..+..+..+++|+.|++++|.+..++.. ..+++|+.|+++++.-..
T Consensus 173 ~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 237 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT---- 237 (306)
T ss_dssp TCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB----
T ss_pred hCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc----
Confidence 99999999999997642 4456788999999999999998777653 678999999998763222
Q ss_pred HHHHhhcccc--cCcceEEeecc
Q 006185 233 IELFLENFNK--RCSRAMGLSQD 253 (657)
Q Consensus 233 ~~~~~~~~~~--~~l~~l~l~~~ 253 (657)
..+..+.. +.++.+++++|
T Consensus 238 --~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 238 --SKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp --CSSSSCCCCCTTCCEEECTTC
T ss_pred --cCHHHHHhhhccCCEEEccCC
Confidence 11222222 35666666665
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.4e-20 Score=181.50 Aligned_cols=199 Identities=19% Similarity=0.283 Sum_probs=172.4
Q ss_pred CCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCC
Q 006185 6 ELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFL 85 (657)
Q Consensus 6 ~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l 85 (657)
.+.+....+.+++|++|++++|.++.++....+++|++|++++|.+..++. |..+++|++|++++|.++.++ .+..+
T Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 30 NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp STTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred CcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 444545566789999999999999999865589999999999999998887 799999999999999998876 68999
Q ss_pred CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcc
Q 006185 86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMS 165 (657)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~ 165 (657)
++|++|++++|. ++....++++++|++|++++|.++.++. ++.+++|++|++++| .+..++. +..+++|++|+++
T Consensus 107 ~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKAD 181 (308)
T ss_dssp TTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECC
T ss_pred CCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECC
Confidence 999999999999 5555569999999999999999998876 899999999999995 5677776 7999999999999
Q ss_pred cCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185 166 HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE 225 (657)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 225 (657)
+|.+. ....+..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus 182 ~n~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 182 DNKIS-------------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SSCCC-------------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCccC-------------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 99764 122378899999999999998877766788999999999873
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.3e-19 Score=178.50 Aligned_cols=200 Identities=20% Similarity=0.207 Sum_probs=174.8
Q ss_pred CCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185 12 SINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL 91 (657)
Q Consensus 12 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L 91 (657)
.++.+++++.++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|++++|.++.++.. +.+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 35678899999999999999997664 6899999999999988777789999999999999999887765 789999999
Q ss_pred EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
++++|.....|..+.++++|++|++++|.++.+|. .+.++++|++|++++ +.++.+|.+++..+++|++|++++|.+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999977788889999999999999999998874 599999999999999 5677888887889999999999999765
Q ss_pred cccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcC
Q 006185 171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGE 225 (657)
Q Consensus 171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~ 225 (657)
. .....+..+++|+.|++++|.+..+|.. ....+|+.+++.+++
T Consensus 162 ~-----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 162 E-----------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp C-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred c-----------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 2 2234467899999999999999888877 666789999998774
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=3.3e-21 Score=193.23 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=127.6
Q ss_pred CccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185 18 DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY 95 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~ 95 (657)
.++..+++.+.+..++... .+++|++|++++|.+..+++..|.++++|++|++++|.++..+. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3455566666665443333 56788999999988888877678889999999999988876554 88888899999988
Q ss_pred CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185 96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES 175 (657)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g 175 (657)
|.... +...++|++|++++|.++.++.. .+++|++|++++| .++.++...++.+++|++|++++|.+..
T Consensus 90 n~l~~----l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 158 (317)
T 3o53_A 90 NYVQE----LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---- 158 (317)
T ss_dssp SEEEE----EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCE----
T ss_pred Ccccc----ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCc----
Confidence 87322 23448888999988888876643 4678888888884 5566655447788888888888886542
Q ss_pred ccccccccchhhh-cCCCCccEEEeecCCCccCCCCCCCCCccEEE
Q 006185 176 EEDTRSNAKFIEL-GALSRLTSLHIDIPKGEIMPSDMSLPNLTSFS 220 (657)
Q Consensus 176 ~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 220 (657)
..+..+ ..+++|+.|++++|.+..++....+++|+.|+
T Consensus 159 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~ 197 (317)
T 3o53_A 159 -------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD 197 (317)
T ss_dssp -------EEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred -------ccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence 223334 35678888888777765444333333333333
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.3e-19 Score=176.17 Aligned_cols=208 Identities=23% Similarity=0.238 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-c
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-S 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~ 80 (657)
+.++.++|. .-.+++++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|++++|.++.++ .
T Consensus 16 ~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 16 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp TSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 345667774 2236899999999999988763 3 8999999999999999888877899999999999999998765 6
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc--ccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE--IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
.+.++++|++|++++|.....+ ..++++++|++|++++|.++. +|..++++++|++|++++| .++.++...+..+.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh
Confidence 7899999999999999855544 469999999999999999986 7889999999999999995 56666655577777
Q ss_pred cCc----EEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185 158 KLE----ELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE 225 (657)
Q Consensus 158 ~L~----~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 225 (657)
+|+ +|++++|.+. ..+.......+|+.|++++|.+..++.. ..+++|+.|++.+++
T Consensus 174 ~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hccccceeeecCCCccc------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 777 8999998765 2333344445899999999999888765 568999999998764
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=6e-19 Score=172.37 Aligned_cols=201 Identities=21% Similarity=0.334 Sum_probs=168.4
Q ss_pred CCCCC-CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCc
Q 006185 12 SINTF-EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLR 89 (657)
Q Consensus 12 ~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~ 89 (657)
..+.+ ...++++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+|.. +.++++|+
T Consensus 10 ~~C~c~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 10 GVCSCNNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp CSBEEETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCEeCCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 34444 458899999999999987654 6899999999999988887789999999999999999888765 58899999
Q ss_pred EEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185 90 TLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167 (657)
Q Consensus 90 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (657)
+|++++|.....+ ..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.+|...+..+++|++|++++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC
Confidence 9999999955555 5678999999999999999977654 78999999999999 4677888776889999999999998
Q ss_pred ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185 168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE 225 (657)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 225 (657)
.+.. .....+..+++|+.|++++|.+..++.. ..+++|+.|++.+++
T Consensus 168 ~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 QLKR-----------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcE-----------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 7642 3334578899999999999998877764 567899999998774
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1e-18 Score=189.01 Aligned_cols=255 Identities=20% Similarity=0.123 Sum_probs=188.7
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL 82 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~ 82 (657)
++++++.+|... .++|++|++++|.++.+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|.
T Consensus 48 s~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~-- 118 (622)
T 3g06_A 48 GESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA-- 118 (622)
T ss_dssp CSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC--
T ss_pred cCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC--
Confidence 456788888522 3899999999999999998 67899999999999998887 67999999999999999887
Q ss_pred cCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEE
Q 006185 83 SFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEEL 162 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L 162 (657)
.+.+|++|++++|.....|.. +++|++|++++|.++.+|.. +.+|+.|++++ +.++.+| ..+++|+.|
T Consensus 119 -~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~-N~l~~l~----~~~~~L~~L 186 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN-NQLTSLP----MLPSGLQEL 186 (622)
T ss_dssp -CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCC----CCCTTCCEE
T ss_pred -CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCC-CCCCCCc----ccCCCCcEE
Confidence 678999999999995555653 48999999999999998864 46899999999 5677787 457899999
Q ss_pred EcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcccc
Q 006185 163 YMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENFNK 242 (657)
Q Consensus 163 ~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 242 (657)
++++|.+. ..+. ..++|+.|++++|.+..++.. +++|+.|+++++
T Consensus 187 ~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N------------------ 231 (622)
T 3g06_A 187 SVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN------------------ 231 (622)
T ss_dssp ECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS------------------
T ss_pred ECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCC------------------
Confidence 99999764 1221 247899999999998777654 456666665543
Q ss_pred cCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccccccccccccceEEEeecCCCceEEeecccccccccc
Q 006185 243 RCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFSNLANDDFNELMFLYIFGCNEMKCLLNSLERTQRVTL 322 (657)
Q Consensus 243 ~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 322 (657)
.++.+. ..+++|+.|++++| .++.++. .+
T Consensus 232 -------------------------------------~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~--------~~ 260 (622)
T 3g06_A 232 -------------------------------------RLTSLP-----VLPSELKELMVSGN-RLTSLPM--------LP 260 (622)
T ss_dssp -------------------------------------CCSCCC-----CCCTTCCEEECCSS-CCSCCCC--------CC
T ss_pred -------------------------------------ccCcCC-----CCCCcCcEEECCCC-CCCcCCc--------cc
Confidence 122111 12466777777777 5554443 26
Q ss_pred ccccEEeccccccccccccccCCCCCCCCccEEEEecCCCcccccch
Q 006185 323 RKLEWLFIRENQNFVEICHGQLPAGCLSNVKRLDVVGCGSMLKILPS 369 (657)
Q Consensus 323 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 369 (657)
++|+.|++++|. ++.+. .....+++|+.|++++++ +.+..|.
T Consensus 261 ~~L~~L~Ls~N~-L~~lp---~~l~~l~~L~~L~L~~N~-l~~~~~~ 302 (622)
T 3g06_A 261 SGLLSLSVYRNQ-LTRLP---ESLIHLSSETTVNLEGNP-LSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSC-CCSCC---GGGGGSCTTCEEECCSCC-CCHHHHH
T ss_pred ccCcEEeCCCCC-CCcCC---HHHhhccccCEEEecCCC-CCCcCHH
Confidence 777777777774 33221 012367888888888855 4443333
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-18 Score=170.63 Aligned_cols=188 Identities=24% Similarity=0.367 Sum_probs=161.5
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
+++++.+|.. ..+++++|++++|.++.++.. + .+++|++|++++|.+..++..+|.++++|++|++++|.++.+|.
T Consensus 25 ~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 4667788842 237899999999999988864 3 89999999999999999999989999999999999999988775
Q ss_pred cccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~ 158 (657)
.+.++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+.++++
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 5689999999999999955554 5689999999999999999988876 89999999999999 4677787766889999
Q ss_pred CcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 159 LEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 159 L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
|++|++++|.+.. .....+..+++|+.|++++|..
T Consensus 183 L~~L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 183 LKTLKLDNNQLKR-----------VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEEECCCCcCCc-----------CCHHHhccccCCCEEEecCCCe
Confidence 9999999997652 3334578899999999999874
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=5.2e-22 Score=210.74 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=101.6
Q ss_pred CCccEEEccCCCccccC--CCC-CCCCCcEEEecCCcCcC-----CCchhhcCCCCccEEEecCCcCCC-CCccc-cCCC
Q 006185 17 EDLTGISLMFNDIHEVP--DGL-ECPKLQALFLQKNHLLV-----IPDPFFQGMKDLKVLDLGGIRMVS-PPSSL-SFLS 86 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~--~~~-~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~-~~l~ 86 (657)
+++++|++++|.++..+ ..+ .+++|++|++++|.+.. ++. .+..+++|++|++++|.++. .+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56777888777776432 212 56778888888777652 222 35677778888887777643 12222 2333
Q ss_pred ----CCcEEEccCCCCCC-----CCcccCCCCCCCEEEeeCCCCCcc-cc----c-ccCCCCCCEEEccCCCCCCC----
Q 006185 87 ----NLRTLRLDYCNHLP-----DLSLIGELSGLEILDLSKSDVNEI-PV----S-FGRLSHLRLLDLTDCYNLEL---- 147 (657)
Q Consensus 87 ----~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~l-p~----~-i~~l~~L~~L~l~~c~~~~~---- 147 (657)
+|++|++++|.... .+..+.++++|++|++++|.++.. +. . ....++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777776321 146677777777777777776521 21 1 22345677777777532221
Q ss_pred CchhHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCccEEEeecCCC
Q 006185 148 IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLTSLHIDIPKG 204 (657)
Q Consensus 148 ~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 204 (657)
++.. +..+++|++|++++|.+..... ......+. ..++|+.|++++|.+
T Consensus 162 l~~~-l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 162 LASV-LRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHH-HHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHH-HhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCC
Confidence 1222 5566777777777765432000 01111221 345677777766654
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2e-19 Score=172.45 Aligned_cols=202 Identities=15% Similarity=0.229 Sum_probs=167.5
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCc-CcCCCchhhcCCCCccEEEecC-CcCCCCC-
Q 006185 5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNH-LLVIPDPFFQGMKDLKVLDLGG-IRMVSPP- 79 (657)
Q Consensus 5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~~~lp- 79 (657)
.+++++|. ..+++++|++++|.++.++... .+++|++|++++|. +..+++..|.++++|++|++++ |.++.++
T Consensus 21 ~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 21 KDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 34778887 4569999999999999888743 89999999999997 8888887789999999999998 8898876
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccCCCCCCC---EEEeeCC-CCCccccc-ccCCCCCC-EEEccCCCCCCCCchhHh
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLE---ILDLSKS-DVNEIPVS-FGRLSHLR-LLDLTDCYNLELIPPGVL 153 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~c~~~~~~~~~~~ 153 (657)
..|.++++|++|++++|.....|. ++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++ +.++.+|..++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhc
Confidence 578899999999999998555554 88888888 9999999 89988765 88999999 999999 45668887744
Q ss_pred hcCccCcEEEcccCc-cccccccccccccccchhhhcCC-CCccEEEeecCCCccCCCCCCCCCccEEEEEE
Q 006185 154 SRLRKLEELYMSHSF-CHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI 223 (657)
Q Consensus 154 ~~l~~L~~L~l~~~~-~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 223 (657)
.. ++|++|++++|. +.. .....+..+ ++|+.|++++|.+..++.. .+++|+.|.+.+
T Consensus 177 ~~-~~L~~L~L~~n~~l~~-----------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTV-----------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp TT-CEEEEEECTTCTTCCE-----------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred CC-CCCCEEEcCCCCCccc-----------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence 44 899999999984 542 234557788 8999999999998888776 688899888754
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.1e-18 Score=173.80 Aligned_cols=184 Identities=24% Similarity=0.340 Sum_probs=161.4
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS 83 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~ 83 (657)
+++++++|.+..+++|++|++++|.++.++....+++|++|++++|.+..++. |..+++|++|++++|.++.++. +.
T Consensus 50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~ 126 (308)
T 1h6u_A 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LA 126 (308)
T ss_dssp TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred CCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hc
Confidence 56788889999999999999999999988874489999999999999988764 7999999999999999998875 89
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEE
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELY 163 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~ 163 (657)
.+++|++|++++|. ++....++++++|++|++++|.++.++. +.++++|++|++++| .++.++. +..+++|++|+
T Consensus 127 ~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 201 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVH 201 (308)
T ss_dssp TCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEE
T ss_pred CCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEE
Confidence 99999999999998 5554459999999999999999998887 999999999999994 5777776 79999999999
Q ss_pred cccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 164 MSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 164 l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
+++|.+. ..+ .+..+++|+.|++++|.+...+
T Consensus 202 L~~N~l~------------~~~-~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 202 LKNNQIS------------DVS-PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CTTSCCC------------BCG-GGTTCTTCCEEEEEEEEEECCC
T ss_pred ccCCccC------------ccc-cccCCCCCCEEEccCCeeecCC
Confidence 9999764 222 4889999999999999875544
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=3.8e-21 Score=204.13 Aligned_cols=363 Identities=18% Similarity=0.118 Sum_probs=227.2
Q ss_pred CCCCCCccEEEccCCCcc-----ccCCCC-CCCCCcEEEecCCcCcC-CCchhhcCCC----CccEEEecCCcCC-----
Q 006185 13 INTFEDLTGISLMFNDIH-----EVPDGL-ECPKLQALFLQKNHLLV-IPDPFFQGMK----DLKVLDLGGIRMV----- 76 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~l~----~Lr~L~L~~~~~~----- 76 (657)
+..+++|++|++++|.++ .++..+ .+++|++|++++|.+.+ .+..++..++ +|++|++++|+++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 567889999999999987 345544 78999999999998873 3444556666 7999999999987
Q ss_pred CCCccccCCCCCcEEEccCCCCCCC--Ccc-----cCCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCC
Q 006185 77 SPPSSLSFLSNLRTLRLDYCNHLPD--LSL-----IGELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYN 144 (657)
Q Consensus 77 ~lp~~~~~l~~L~~L~l~~~~~~~~--~~~-----~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~ 144 (657)
.++..+.++++|++|++++|. ++. +.. ....++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 468889999999999999998 432 222 2346789999999999884 46678889999999999965
Q ss_pred CCCCchhHhh-----cCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC-----CC--CC
Q 006185 145 LELIPPGVLS-----RLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP-----SD--MS 212 (657)
Q Consensus 145 ~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~--~~ 212 (657)
++......+. ..++|++|++++|.+.... ....+..+..+++|++|++++|.+.... .. ..
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN-------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH-------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH-------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence 4433222233 3669999999999764311 1135667788999999999998763321 11 23
Q ss_pred CCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecccchhhhHHHHHHHHccccEEEEeeccccccccc-ccc--
Q 006185 213 LPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQDMRISALHSWIKNLLLRSEILALIEVNDLENIFS-NLA-- 289 (657)
Q Consensus 213 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~l~~~~~~~~~~L~~L~L~~~~~l~~~~~-~l~-- 289 (657)
+++|+.|+++++.-.. ..+..++..+... ++|+.|+++++. +.+..+ .+.
T Consensus 255 ~~~L~~L~L~~n~l~~-------------------------~~~~~l~~~l~~~-~~L~~L~Ls~n~-i~~~~~~~l~~~ 307 (461)
T 1z7x_W 255 SSRLRTLWIWECGITA-------------------------KGCGDLCRVLRAK-ESLKELSLAGNE-LGDEGARLLCET 307 (461)
T ss_dssp TCCCCEEECTTSCCCH-------------------------HHHHHHHHHHHHC-TTCCEEECTTCC-CHHHHHHHHHHH
T ss_pred CCCceEEECcCCCCCH-------------------------HHHHHHHHHHhhC-CCcceEECCCCC-CchHHHHHHHHH
Confidence 5677777776542111 0111234443333 667777776662 222111 010
Q ss_pred -ccccccceEEEeecCCCceEEeeccccccccccccccEEeccccccccccccccCCC---CCCCCccEEEEecCCCccc
Q 006185 290 -NDDFNELMFLYIFGCNEMKCLLNSLERTQRVTLRKLEWLFIRENQNFVEICHGQLPA---GCLSNVKRLDVVGCGSMLK 365 (657)
Q Consensus 290 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~ 365 (657)
....++|++|++++|. +..............+++|++|+++++. +.+.....+.. ...++|++|++++|. +++
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~ 384 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSD 384 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CCh
Confidence 0123578888888773 3211000000022346788888888874 33221111111 125789999999974 553
Q ss_pred ----ccchhHHHhcccCcEEEEcccccceeeeeccccccccccc-ccCCcccEEecCCCc
Q 006185 366 ----ILPSHLVQSFQNLQRLMVESCELLVSVFEIERVNIAKEET-ELFSSLEKLTLIDLP 420 (657)
Q Consensus 366 ----~~p~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 420 (657)
.++..+ ..+++|++|++++++ +... +.......+ ...++|+.|.+.++.
T Consensus 385 ~~~~~l~~~l-~~~~~L~~L~l~~N~-i~~~----~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 385 SSCSSLAATL-LANHSLRELDLSNNC-LGDA----GILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHH-HHCCCCCEEECCSSS-CCHH----HHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hhHHHHHHHH-HhCCCccEEECCCCC-CCHH----HHHHHHHHhccCCcchhheeecccc
Confidence 234333 568999999999864 2211 100001111 124568888887764
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.4e-18 Score=169.89 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=163.7
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-ccc
Q 006185 5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLS 83 (657)
Q Consensus 5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~ 83 (657)
..+.+......+++|+.|++++|.++.++....+++|++|++++|.+..++. +.++++|++|++++|.++.++. .++
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 29 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp SCTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccccccccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhc
Confidence 3445555677889999999999999988876689999999999999887653 7899999999999999988765 478
Q ss_pred CCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcE
Q 006185 84 FLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEE 161 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~ 161 (657)
++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...++.+++|++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCE
Confidence 9999999999999955554 4589999999999999999988765 689999999999995 566777776789999999
Q ss_pred EEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEE
Q 006185 162 LYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSIT 222 (657)
Q Consensus 162 L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 222 (657)
|++++|.+.. ..+..+..+++|+.|++++|... ..+++|+.+.++
T Consensus 186 L~L~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~ 230 (272)
T 3rfs_A 186 LRLYQNQLKS-----------VPDGVFDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEW 230 (272)
T ss_dssp EECCSSCCSC-----------CCTTTTTTCTTCCEEECCSSCBC-----CCTTTTHHHHHH
T ss_pred EECCCCcCCc-----------cCHHHHhCCcCCCEEEccCCCcc-----ccCcHHHHHHHH
Confidence 9999997652 34455788999999999998753 235566666544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=3.9e-18 Score=168.00 Aligned_cols=185 Identities=20% Similarity=0.164 Sum_probs=161.3
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+++++.+|.- ..+.+++|++++|.++.++.. + .+++|++|++++|.+..++. .+.+++|++|++++|.++.+|..
T Consensus 19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~ 95 (290)
T 1p9a_G 19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLL 95 (290)
T ss_dssp TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCCcCchh
Confidence 5677888842 248999999999999877543 3 89999999999999997776 37899999999999999999999
Q ss_pred ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccC
Q 006185 82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL 159 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L 159 (657)
+..+++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+|.+++.++++|
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENL 174 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTC
T ss_pred hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCC
Confidence 999999999999999966655 6799999999999999999988776 68999999999999 56788998877899999
Q ss_pred cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 160 EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 160 ~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
++|++++|.+. ..+..+....+|+.+++.+|..
T Consensus 175 ~~L~L~~N~l~------------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 175 DTLLLQENSLY------------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECCSSCCC------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCCcCC------------ccChhhcccccCCeEEeCCCCc
Confidence 99999999775 5666777888999999999874
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=3.9e-18 Score=166.77 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=160.8
Q ss_pred CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185 15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD 94 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~ 94 (657)
.+.++..+++..+.+.++.....+++|++|+++++.+..++. +..+++|++|++++|.++.++ .+.++++|++|+++
T Consensus 17 ~~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred hHHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 344555666777777666555578899999999999887775 688999999999999998764 78899999999999
Q ss_pred CCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185 95 YCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ 172 (657)
Q Consensus 95 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 172 (657)
+|.....+ ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...++++++|++|++++|.+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 99855544 5579999999999999999987765 789999999999995 6777877767899999999999997642
Q ss_pred cccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEEEEEcC
Q 006185 173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFSITIGE 225 (657)
Q Consensus 173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~l~~~~ 225 (657)
..+..++.+++|+.|++++|.+..++.. ..+++|+.|++.++.
T Consensus 172 ----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 172 ----------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 3344578899999999999998777764 678999999998774
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.8e-18 Score=169.26 Aligned_cols=178 Identities=28% Similarity=0.353 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCC
Q 006185 7 LKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLS 86 (657)
Q Consensus 7 l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~ 86 (657)
+.++...+.+++|++|++++|.++.++....+++|++|++++|.+..+++ +.++++|++|++++|.++.++. +..++
T Consensus 36 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 36 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred cccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 34444455667777777777777766654467777777777777776665 5677777777777777766544 67777
Q ss_pred CCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 87 NLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 87 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
+|++|++++|. ++.+..++.+++|++|++++|.++.+ ..++++++|++|++++| .++.++. +..+++|++|++++
T Consensus 113 ~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp TCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCS
T ss_pred CCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCC
Confidence 77777777776 44455667777777777777777766 45677777777777774 4555554 66777777777777
Q ss_pred CccccccccccccccccchhhhcCCCCccEEEeecCCCc
Q 006185 167 SFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE 205 (657)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (657)
|.+. ....+..+++|+.|++++|.+.
T Consensus 188 N~i~-------------~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 188 NHIS-------------DLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SCCC-------------BCGGGTTCTTCSEEEEEEEEEE
T ss_pred CcCC-------------CChhhccCCCCCEEECcCCccc
Confidence 6543 1233666677777777766543
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-19 Score=182.22 Aligned_cols=238 Identities=18% Similarity=0.159 Sum_probs=172.8
Q ss_pred CCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185 14 NTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL 91 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L 91 (657)
..+++|++|++++|.++.++.. + .+++|++|++++|.+..+++ |..+++|++|++++|.++.++ ..++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 4567999999999999987643 3 89999999999999886665 789999999999999987655 34899999
Q ss_pred EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHh-hcCccCcEEEcccCcc
Q 006185 92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVL-SRLRKLEELYMSHSFC 169 (657)
Q Consensus 92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~-~~l~~L~~L~l~~~~~ 169 (657)
++++|.....+. ..+++|++|++++|.++.++. .++.+++|++|++++| .+..++...+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcC
Confidence 999998443332 347889999999999997754 6888999999999995 4555443324 4789999999999876
Q ss_pred ccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC-CCCCCccEEEEEEcCccChhhHHHHHhhccc-ccCcce
Q 006185 170 HWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD-MSLPNLTSFSITIGEEDTLNDFIELFLENFN-KRCSRA 247 (657)
Q Consensus 170 ~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~ 247 (657)
.. . .....+++|+.|++++|.+..++.. ..+++|+.|+++++.-... ++.+. .+.++.
T Consensus 182 ~~------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-------~~~~~~l~~L~~ 241 (317)
T 3o53_A 182 YD------------V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-------EKALRFSQNLEH 241 (317)
T ss_dssp CE------------E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-------CTTCCCCTTCCE
T ss_pred cc------------c-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-------hhHhhcCCCCCE
Confidence 42 1 2334588999999999988777655 5678899998887643221 22222 256677
Q ss_pred EEeecccch-hhhHHHHHHHHccccEEEEeecccc
Q 006185 248 MGLSQDMRI-SALHSWIKNLLLRSEILALIEVNDL 281 (657)
Q Consensus 248 l~l~~~~~~-~~l~~~~~~~~~~L~~L~L~~~~~l 281 (657)
+++++|.-. ..+|.++... ++|+.+++.++..+
T Consensus 242 L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~~~~~l 275 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKL 275 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhcc-ccceEEECCCchhc
Confidence 777766443 3455555443 55666665555433
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2e-17 Score=159.57 Aligned_cols=175 Identities=23% Similarity=0.322 Sum_probs=147.7
Q ss_pred CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccC
Q 006185 17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDY 95 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~ 95 (657)
...++++++++.++.+|.... +++++|++++|.+..+++..|.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 567899999999999997764 68999999999999888877899999999999999998765 4588999999999999
Q ss_pred CCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccc
Q 006185 96 CNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQF 173 (657)
Q Consensus 96 ~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 173 (657)
|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...++++++|++|++++|.+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 169 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS-- 169 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc--
Confidence 9955554 6778999999999999999988876 68899999999999 46778877668899999999999987642
Q ss_pred ccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 174 ESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 174 ~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
..+..+..+++|+.|++++|..
T Consensus 170 ---------~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 ---------VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ---------CCTTTTTTCTTCCEEECCSCCB
T ss_pred ---------cCHHHHhCCCCCCEEEeeCCce
Confidence 3334677888888888888764
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.7e-18 Score=181.05 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=119.0
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL 116 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 116 (657)
.+++|++|++++|.+..+++..|..+++|++|+|++|.++..+. ++.+++|++|++++|.....+ ..++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence 44588888888888887777667888888888888888875554 888888888888888733222 3378888888
Q ss_pred eCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhc-CCCCcc
Q 006185 117 SKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELG-ALSRLT 195 (657)
Q Consensus 117 ~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~-~l~~L~ 195 (657)
++|.++.+|.. .+++|++|++++| .++.+++..++.+++|++|++++|.+.. ..+..+. .+++|+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAELAASSDTLE 172 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE-----------EEGGGGGGGTTTCC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC-----------cChHHHhhhCCccc
Confidence 88888877653 5678888888885 4555544337888888888888886542 3445554 678888
Q ss_pred EEEeecCCCccCCCCCCCCCccEEEEE
Q 006185 196 SLHIDIPKGEIMPSDMSLPNLTSFSIT 222 (657)
Q Consensus 196 ~L~l~~~~~~~~~~~~~l~~L~~L~l~ 222 (657)
.|++++|.+..++....+++|+.|+++
T Consensus 173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred EEecCCCccccccccccCCCCCEEECC
Confidence 888888776555444334444444443
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=1e-18 Score=174.58 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=148.5
Q ss_pred CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCc--CCCchhh------cCCCCccEEEecCCcCC-CCCccc
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLL--VIPDPFF------QGMKDLKVLDLGGIRMV-SPPSSL 82 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~--~~~~~~~------~~l~~Lr~L~L~~~~~~-~lp~~~ 82 (657)
.+..++|+.|++++|.+ .+|... .. |++|++++|.+. .++..++ .++++|++|++++|.++ .+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34567788889999988 777654 32 888899988875 4665431 26899999999999986 688876
Q ss_pred --cCCCCCcEEEccCCCCCCCCcccCCC-----CCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCC--CchhH
Q 006185 83 --SFLSNLRTLRLDYCNHLPDLSLIGEL-----SGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLEL--IPPGV 152 (657)
Q Consensus 83 --~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~--~~~~~ 152 (657)
..+++|++|++++|.....|..++++ ++|++|++++|.++.++ ..++++++|++|++++|...+. ++..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA- 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-
Confidence 89999999999999865567777766 89999999999999776 6799999999999999654443 2333
Q ss_pred h--hcCccCcEEEcccCccccccccccccccccch-hhhcCCCCccEEEeecCCCccCCC---CCCCCCccEEEEEEc
Q 006185 153 L--SRLRKLEELYMSHSFCHWQFESEEDTRSNAKF-IELGALSRLTSLHIDIPKGEIMPS---DMSLPNLTSFSITIG 224 (657)
Q Consensus 153 ~--~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~~ 224 (657)
+ +++++|++|++++|.+... ...+ ..+..+++|+.|++++|.+...+. ...+++|+.|+++++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETP---------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCH---------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred HHhccCCCCCEEECCCCcCcch---------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 3 7899999999999876410 0122 334578899999999998866442 134566666665543
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=1.1e-17 Score=164.05 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=157.5
Q ss_pred CCCCCCCC--CCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185 4 GVELKDWP--SINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP 79 (657)
Q Consensus 4 ~~~l~~~~--~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 79 (657)
++.+.+++ .+..+++|++|++++|.++.++... .+++|++|++++|.+..++...|.++++|++|++++|.+..++
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence 45666666 5788999999999999999887643 8999999999999999888777899999999999999998776
Q ss_pred c-cccCCCCCcEEEccCCCCCC--CCcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCC----EEEccCCCCCCCCchh
Q 006185 80 S-SLSFLSNLRTLRLDYCNHLP--DLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLR----LLDLTDCYNLELIPPG 151 (657)
Q Consensus 80 ~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~----~L~l~~c~~~~~~~~~ 151 (657)
. .++++++|++|++++|.... .|..++++++|++|++++|.++.++ ..+..+.+|+ +|++++ +.++.++..
T Consensus 117 ~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~ 195 (276)
T 2z62_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPG 195 (276)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTT
T ss_pred chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC-CcccccCcc
Confidence 5 79999999999999998444 4789999999999999999999765 4566666666 899999 567777766
Q ss_pred HhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCCc
Q 006185 152 VLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGE 205 (657)
Q Consensus 152 ~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (657)
.....+|++|++++|.+.. .....+..+++|+.|++++|...
T Consensus 196 -~~~~~~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 196 -AFKEIRLKELALDTNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -SSCSCCEEEEECCSSCCSC-----------CCTTTTTTCCSCCEEECCSSCBC
T ss_pred -ccCCCcccEEECCCCceee-----------cCHhHhcccccccEEEccCCccc
Confidence 4556689999999997652 23344688999999999998753
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.1e-18 Score=162.07 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=155.9
Q ss_pred CCCCCCCCC--CCCCCCccEEEccCCC-ccccCCCC--CCCCCcEEEecC-CcCcCCCchhhcCCCCccEEEecCCcCCC
Q 006185 4 GVELKDWPS--INTFEDLTGISLMFND-IHEVPDGL--ECPKLQALFLQK-NHLLVIPDPFFQGMKDLKVLDLGGIRMVS 77 (657)
Q Consensus 4 ~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~l~~~~--~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~ 77 (657)
++.++.+|. +..+++|++|++++|. ++.++... .+++|++|++++ |.+..++...|.++++|++|++++|.++.
T Consensus 40 ~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 40 ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 456677764 7889999999999997 99998754 899999999998 89998988889999999999999999999
Q ss_pred CCccccCCCCCc---EEEccCC-CCCCCC-cccCCCCCCC-EEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchh
Q 006185 78 PPSSLSFLSNLR---TLRLDYC-NHLPDL-SLIGELSGLE-ILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPG 151 (657)
Q Consensus 78 lp~~~~~l~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~ 151 (657)
+|. +..+.+|+ +|++++| .....+ ..+.++++|+ +|++++|.++.+|......++|++|++++|..++.++..
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 987 88888888 9999999 633444 5689999999 999999999999887655689999999996568888877
Q ss_pred HhhcC-ccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecC
Q 006185 152 VLSRL-RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIP 202 (657)
Q Consensus 152 ~~~~l-~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~ 202 (657)
.+..+ ++|++|++++|.+. ..+.. .+++|+.|++..+
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~------------~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVT------------ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCC------------CCCCT--TCTTCSEEECTTC
T ss_pred HhhccccCCcEEECCCCccc------------cCChh--HhccCceeeccCc
Confidence 78899 99999999998764 22222 6788999988764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=6.2e-17 Score=156.18 Aligned_cols=166 Identities=25% Similarity=0.357 Sum_probs=143.9
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP- 79 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp- 79 (657)
++.+++.+|.- ..+.+++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|++++|+++.+|
T Consensus 22 ~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 100 (251)
T 3m19_A 22 QGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100 (251)
T ss_dssp TTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence 35677788842 2379999999999999887643 8999999999999999888888899999999999999998876
Q ss_pred ccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 80 SSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 80 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
..+..+++|++|++++|.....+ ..++++++|++|++++|.++.+|. .++++++|++|++++ +.++.++...+.+++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 46789999999999999955555 457899999999999999998887 599999999999999 567778776689999
Q ss_pred cCcEEEcccCccc
Q 006185 158 KLEELYMSHSFCH 170 (657)
Q Consensus 158 ~L~~L~l~~~~~~ 170 (657)
+|++|++++|.+.
T Consensus 180 ~L~~L~l~~N~~~ 192 (251)
T 3m19_A 180 KLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSCCBC
T ss_pred CCCEEEeeCCcee
Confidence 9999999999754
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=5.4e-18 Score=169.33 Aligned_cols=215 Identities=19% Similarity=0.236 Sum_probs=142.5
Q ss_pred ccEEEccCCCccc--cCCCC--------CCCCCcEEEecCCcCc-CCCchhh-cCCCCccEEEecCCcCCCCCccccCC-
Q 006185 19 LTGISLMFNDIHE--VPDGL--------ECPKLQALFLQKNHLL-VIPDPFF-QGMKDLKVLDLGGIRMVSPPSSLSFL- 85 (657)
Q Consensus 19 L~~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~~~lp~~~~~l- 85 (657)
+++|++++|.++. ++... .+++|++|++++|.+. .+|..+| ..+++|++|++++|+++..|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 7777777777753 44322 3777888888888777 5666543 77788888888888877667766666
Q ss_pred ----CCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc---ccccc--cCCCCCCEEEccCCCCCC---CCchhH
Q 006185 86 ----SNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE---IPVSF--GRLSHLRLLDLTDCYNLE---LIPPGV 152 (657)
Q Consensus 86 ----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~c~~~~---~~~~~~ 152 (657)
++|++|++++|.....+ ..++++++|++|++++|.+.. +|..+ +++++|++|++++| .++ .++...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHH
Confidence 77888888888754444 677788888888888887652 34444 77788888888874 444 333343
Q ss_pred hhcCccCcEEEcccCccccccccccccccccc-hhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhh
Q 006185 153 LSRLRKLEELYMSHSFCHWQFESEEDTRSNAK-FIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLND 231 (657)
Q Consensus 153 ~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 231 (657)
+..+++|++|++++|.+.. .. ...+..+++|+.|++++|.+..+|.... ++|+.|+++++.-...|.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRD-----------AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp HHTTCCCSEEECTTSCCCS-----------SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC
T ss_pred HhcCCCCCEEECCCCcCCc-----------ccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh
Confidence 4567788888888776542 11 1334556778888888887777766644 677888877664333221
Q ss_pred HHHHHhhcccccCcceEEeecc
Q 006185 232 FIELFLENFNKRCSRAMGLSQD 253 (657)
Q Consensus 232 ~~~~~~~~~~~~~l~~l~l~~~ 253 (657)
-...+.++.+++++|
T Consensus 292 -------~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 -------PDELPQVGNLSLKGN 306 (312)
T ss_dssp -------TTTSCEEEEEECTTC
T ss_pred -------HhhCCCCCEEeccCC
Confidence 112366777777766
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=6.8e-17 Score=159.26 Aligned_cols=189 Identities=22% Similarity=0.269 Sum_probs=160.2
Q ss_pred CCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccC
Q 006185 16 FEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDY 95 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~ 95 (657)
+.++..+.+..+.++++.....+++|++|++++|.+..++. +..+++|++|++++|+++.++. +.++++|++|++++
T Consensus 23 l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 34444456666666665544478899999999999988875 7899999999999999998887 99999999999999
Q ss_pred CCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcccccccc
Q 006185 96 CNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFES 175 (657)
Q Consensus 96 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g 175 (657)
|. ++.+..++++++|++|++++|.++.++ .+..+++|++|++++| .++.++. +.++++|++|++++|.+.
T Consensus 100 n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~----- 169 (291)
T 1h6t_A 100 NK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS----- 169 (291)
T ss_dssp SC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC-----
T ss_pred Cc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc-----
Confidence 98 666777999999999999999999874 6899999999999995 5666743 899999999999999764
Q ss_pred ccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185 176 EEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE 225 (657)
Q Consensus 176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 225 (657)
... .+..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus 170 -------~~~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 -------DIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -------CCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -------cch-hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 222 288999999999999999888777889999999999873
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-17 Score=177.23 Aligned_cols=174 Identities=18% Similarity=0.147 Sum_probs=140.3
Q ss_pred CCCCCccEEEccCCCccccCC-CC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEE
Q 006185 14 NTFEDLTGISLMFNDIHEVPD-GL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTL 91 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L 91 (657)
..+++|++|++++|.++.++. .+ .+++|++|++++|.+...++ |..+++|++|++++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 345699999999999998764 34 89999999999999986666 7999999999999999876664 3899999
Q ss_pred EccCCCCCCCCcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 92 RLDYCNHLPDLSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 92 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
++++|.....+. ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|......+++|++|++++|.+.
T Consensus 105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999444443 3578999999999999976 5579999999999999965444445552348999999999999764
Q ss_pred cccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 171 WQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 171 ~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
. ......+++|+.|++++|.+..++
T Consensus 183 ~-------------~~~~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 183 D-------------VKGQVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp E-------------EECCCCCTTCCEEECCSSCCCEEC
T ss_pred c-------------ccccccCCCCCEEECCCCCCCCCC
Confidence 2 133456899999999999875444
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=4.5e-17 Score=175.97 Aligned_cols=183 Identities=27% Similarity=0.349 Sum_probs=151.3
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185 5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF 84 (657)
Q Consensus 5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~ 84 (657)
..+.++.....+++|+.|++++|.+..++....+++|++|++++|.+..+++ |..+++|++|+|++|.+..+| .+..
T Consensus 31 ~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 31 KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp SCTTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred CCcccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 3445555667788999999999999988865589999999999999888777 789999999999999988876 6889
Q ss_pred CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
+++|++|++++|. +..+..+..+++|+.|++++|.++.+ ..+..+++|++|++++| .+..++. +..+++|++|++
T Consensus 108 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 108 LKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEEC
Confidence 9999999999998 55667788999999999999999887 57889999999999995 4566655 788999999999
Q ss_pred ccCccccccccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 165 SHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
++|.+. .+..+..+++|+.|++++|.+...|
T Consensus 183 s~N~i~-------------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 183 SKNHIS-------------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCC-------------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCC-------------CChHHccCCCCCEEEccCCcCcCCc
Confidence 998663 2246888899999999988765443
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1.3e-16 Score=162.10 Aligned_cols=156 Identities=20% Similarity=0.208 Sum_probs=118.5
Q ss_pred CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CC-ccccCCCCCcE
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PP-SSLSFLSNLRT 90 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp-~~~~~l~~L~~ 90 (657)
++.|.. ++++.+++.+++||..+ .+++++|++++|.+..+|...|.++++|++|+|++|.+.+ +| ..|.++++|+.
T Consensus 6 ~C~C~~-~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp SSEEET-TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred ccEeeC-CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 455543 67889999999999765 3689999999999999998888999999999999998754 55 46788888776
Q ss_pred EE-ccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCc-cCcEEEccc
Q 006185 91 LR-LDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLR-KLEELYMSH 166 (657)
Q Consensus 91 L~-l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~-~L~~L~l~~ 166 (657)
+. +.++..... |..+..+++|++|++++|.++.+|.. +....++..|++.++..+..++...+..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 44 444553333 47788999999999999998877653 556667888888887777777765455553 577777777
Q ss_pred Cccc
Q 006185 167 SFCH 170 (657)
Q Consensus 167 ~~~~ 170 (657)
|.+.
T Consensus 164 N~i~ 167 (350)
T 4ay9_X 164 NGIQ 167 (350)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7553
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=161.56 Aligned_cols=217 Identities=13% Similarity=0.103 Sum_probs=147.6
Q ss_pred CCccEEEccCCCccc-----cCCCCCCCCCcEEEecCCcCc-CCCchhh-cCCCCccEEEecCCcCCC-CC----ccccC
Q 006185 17 EDLTGISLMFNDIHE-----VPDGLECPKLQALFLQKNHLL-VIPDPFF-QGMKDLKVLDLGGIRMVS-PP----SSLSF 84 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~-----l~~~~~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~L~~~~~~~-lp----~~~~~ 84 (657)
..++.+.+..+.++. +.....+++|++|++++|.+. ..|..++ ..+++|++|++++|.++. .+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456777887776641 222224567888888888887 4444433 788888888888888764 22 23456
Q ss_pred CCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCc---cccc--ccCCCCCCEEEccCCCCCCCCchh---Hhhc
Q 006185 85 LSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNE---IPVS--FGRLSHLRLLDLTDCYNLELIPPG---VLSR 155 (657)
Q Consensus 85 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~---lp~~--i~~l~~L~~L~l~~c~~~~~~~~~---~~~~ 155 (657)
+++|++|++++|.....+ ..++++++|++|++++|.+.. ++.. ++++++|++|++++| .++.++.. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence 888888888888854444 678888888888888888653 3332 467888888888885 45554432 3567
Q ss_pred CccCcEEEcccCccccccccccccccccchhhhcCC---CCccEEEeecCCCccCCCCCCCCCccEEEEEEcCccChhhH
Q 006185 156 LRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL---SRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGEEDTLNDF 232 (657)
Q Consensus 156 l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 232 (657)
+++|++|++++|.+.. ..+..+..+ ++|++|++++|.+..+|.... ++|+.|+++++.-...+.
T Consensus 223 l~~L~~L~Ls~N~l~~-----------~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRA-----------TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ- 289 (310)
T ss_dssp TCCCSSEECTTSCCCC-----------CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-
T ss_pred CCCCCEEECCCCCCCc-----------cchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-
Confidence 7888888888886642 223444444 688888888888877776643 788888888774333211
Q ss_pred HHHHhhcccccCcceEEeecc
Q 006185 233 IELFLENFNKRCSRAMGLSQD 253 (657)
Q Consensus 233 ~~~~~~~~~~~~l~~l~l~~~ 253 (657)
....+.++.+++++|
T Consensus 290 ------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 ------PDELPEVDNLTLDGN 304 (310)
T ss_dssp ------TTSCCCCSCEECSST
T ss_pred ------hhhCCCccEEECcCC
Confidence 122377788888776
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=153.44 Aligned_cols=174 Identities=18% Similarity=0.144 Sum_probs=132.6
Q ss_pred CCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEE
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLR 92 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~ 92 (657)
...+.++..++++.+.+++++....+++|++|++++|.+..++. +..+++|++|++++|+++.++. +.++++|++|+
T Consensus 15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 34566677778888888877744478888888888888887773 6788888888888888888777 88888888888
Q ss_pred ccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccc
Q 006185 93 LDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQ 172 (657)
Q Consensus 93 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 172 (657)
+++|.....+. +.. .+|++|++++|.++.++ .+.++++|++|++++ +.++.++. ++.+++|++|++++|.+..
T Consensus 92 L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~- 164 (263)
T 1xeu_A 92 VNRNRLKNLNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN- 164 (263)
T ss_dssp CCSSCCSCCTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB-
T ss_pred CCCCccCCcCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc-
Confidence 88888433333 333 88888888888888775 588888888888888 45666763 7888888888888886641
Q ss_pred cccccccccccchhhhcCCCCccEEEeecCCCccCC
Q 006185 173 FESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMP 208 (657)
Q Consensus 173 ~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 208 (657)
...+..+++|+.|++++|.+...+
T Consensus 165 ------------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 ------------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------------hHHhccCCCCCEEeCCCCcccCCc
Confidence 256778888888888888765443
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2e-16 Score=146.39 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=98.3
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEE
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILD 115 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 115 (657)
.+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.... .+..++++++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 55667777777777666663 566777777777777655443 56667777777777766322 356677777777777
Q ss_pred eeCCCCCc-ccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCc
Q 006185 116 LSKSDVNE-IPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRL 194 (657)
Q Consensus 116 l~~~~i~~-lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L 194 (657)
+++|.++. .|..++++++|++|++++|..++.+|. +..+++|++|++++|.+. . ...+..+++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~-~~~l~~l~~L 183 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D-YRGIEDFPKL 183 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C-CTTGGGCSSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C-hHHhccCCCC
Confidence 77777763 566677777777777777554666663 677777777777776543 1 2256667777
Q ss_pred cEEEeecCCCc
Q 006185 195 TSLHIDIPKGE 205 (657)
Q Consensus 195 ~~L~l~~~~~~ 205 (657)
+.|++++|.++
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 77777777653
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.2e-17 Score=158.13 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=93.4
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccC
Q 006185 5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSF 84 (657)
Q Consensus 5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~ 84 (657)
+++++++.+..+++|++|++++|.++.++....+++|++|++++|.+..+++ |.++++|++|++++|+++.+|....
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-
Confidence 3445555555666666666666666666633356666666666666665555 5666666666666666665554332
Q ss_pred CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEc
Q 006185 85 LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYM 164 (657)
Q Consensus 85 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l 164 (657)
.+|++|++++|. ++.+..++++++|++|++++|.++.+| .++.+++|++|++++| .+..++. +..+++|+.|++
T Consensus 106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~l 179 (263)
T 1xeu_A 106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDL 179 (263)
T ss_dssp -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTT--STTCCCCCEEEE
T ss_pred -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHH--hccCCCCCEEeC
Confidence 666666666665 444445666666666666666666654 4666666666666663 3444422 566666666666
Q ss_pred ccCcc
Q 006185 165 SHSFC 169 (657)
Q Consensus 165 ~~~~~ 169 (657)
++|.+
T Consensus 180 ~~N~~ 184 (263)
T 1xeu_A 180 TGQKC 184 (263)
T ss_dssp EEEEE
T ss_pred CCCcc
Confidence 66543
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=9e-16 Score=145.51 Aligned_cols=150 Identities=25% Similarity=0.347 Sum_probs=129.4
Q ss_pred ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCC
Q 006185 19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCN 97 (657)
Q Consensus 19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 97 (657)
.+.++++++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+|. .|..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 5679999999999997654 789999999999998877778999999999999999988875 46899999999999998
Q ss_pred CCCCC-cccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 98 HLPDL-SLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 98 ~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
....+ ..+..+++|++|++++|.++.+|..+.++++|++|++++ +.+..++...+..+++|++|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55555 457899999999999999999999999999999999999 5677887766888999999999888653
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=5.5e-16 Score=145.92 Aligned_cols=156 Identities=26% Similarity=0.338 Sum_probs=128.2
Q ss_pred CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCc
Q 006185 11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLR 89 (657)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~ 89 (657)
|..+.+. -+.++++++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|+++.+ |..|.++++|+
T Consensus 6 P~~C~C~-~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 6 PAACTCS-NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp CTTSEEE-TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCEEC-CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 4445554 3688999999999987654 6899999999999988887789999999999999999865 77899999999
Q ss_pred EEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185 90 TLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167 (657)
Q Consensus 90 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (657)
+|++++|.....| ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.++.++.+.+..+++|++|++++|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999999855555 4468899999999999998876 45688899999999998 5677777666788888888888888
Q ss_pred cc
Q 006185 168 FC 169 (657)
Q Consensus 168 ~~ 169 (657)
.+
T Consensus 163 ~~ 164 (220)
T 2v9t_B 163 PF 164 (220)
T ss_dssp CE
T ss_pred Cc
Confidence 54
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=5.7e-16 Score=144.82 Aligned_cols=148 Identities=26% Similarity=0.407 Sum_probs=101.4
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L~~L~l~~~~~ 98 (657)
+.++++.+.++.+|... .++|++|++++|.+..++..+|.++++|++|++++|+++.+|. .+.++++|++|++++|..
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 56667777777776544 3467777777777777776666777777777777777776654 356777777777777774
Q ss_pred CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
...+ ..++++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+.++++|++|++++|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence 4444 3467777777777777777766654 56777777777777 345566665566777777777777643
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.4e-16 Score=145.56 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
+.++..+| ....+++++|++++|.++.++... .+++|++|++++|.+..++...|.++++|++|++++|+++.+|..
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 45667777 334679999999999999888754 899999999999999999888889999999999999999887754
Q ss_pred -ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCcc
Q 006185 82 -LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRK 158 (657)
Q Consensus 82 -~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~ 158 (657)
+.++++|++|++++|.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~ 166 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG 166 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCC
Confidence 689999999999999855555 4578999999999999999988776 78899999999999632 245667
Q ss_pred CcEEEcccCccc
Q 006185 159 LEELYMSHSFCH 170 (657)
Q Consensus 159 L~~L~l~~~~~~ 170 (657)
|+.|+++.+.+.
T Consensus 167 l~~L~~~~n~~~ 178 (208)
T 2o6s_A 167 IRYLSEWINKHS 178 (208)
T ss_dssp THHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 888888777543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5.6e-16 Score=143.32 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=100.9
Q ss_pred CCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185 14 NTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR 92 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~ 92 (657)
+.+++|++|++++|.++.++....+++|++|++++|.+..++. |..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4566777777777777777743367777777777776555442 5677777777777777753 566677777777777
Q ss_pred ccCCCCCC-CCcccCCCCCCCEEEeeCCC-CCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 93 LDYCNHLP-DLSLIGELSGLEILDLSKSD-VNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 93 l~~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
+++|.... .|..++++++|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCccc
Confidence 77776332 35667777777777777776 66666 5777777777777773 4555552 67777777777777653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=6.3e-17 Score=174.87 Aligned_cols=190 Identities=22% Similarity=0.268 Sum_probs=162.5
Q ss_pred CCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEcc
Q 006185 15 TFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLD 94 (657)
Q Consensus 15 ~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~ 94 (657)
.+..+..+.+..+.+.++.....+++|++|++++|.+..++. |..+++|++|+|++|.+..++. +..+++|++|+|+
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 345566667777777776655578999999999999988875 7999999999999999998887 9999999999999
Q ss_pred CCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccc
Q 006185 95 YCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFE 174 (657)
Q Consensus 95 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (657)
+|. +..+..++.+++|++|++++|.+..++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+.
T Consensus 96 ~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~---- 166 (605)
T 1m9s_A 96 ENK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS---- 166 (605)
T ss_dssp SSC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC----
T ss_pred CCC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC----
Confidence 998 666678999999999999999999875 5999999999999995 5666643 899999999999999764
Q ss_pred cccccccccchhhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEEcC
Q 006185 175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITIGE 225 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 225 (657)
..+. +..+++|+.|++++|.+..++....+++|+.|++.++.
T Consensus 167 --------~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 167 --------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred --------Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 2222 88999999999999999888777889999999998763
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=142.59 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=125.4
Q ss_pred CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCC-CchhhcCCCCccEEEecCCcCCCCCc-cccCCCCC
Q 006185 11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVI-PDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFLSNL 88 (657)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l~~L 88 (657)
|..+.+. -+++++++|.++.+|..+ .+.+++|++++|.+..+ +..+|.++++|++|++++|.++.++. .|.++++|
T Consensus 6 P~~C~C~-~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 6 PEKCRCE-GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CTTCEEE-TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEC-CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 4455554 368999999999998765 34678999999999866 45667899999999999999987664 78999999
Q ss_pred cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
++|++++|.....+ ..++++++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecC
Confidence 99999999855554 5688999999999999998876 56688899999999998 456666444488888899998888
Q ss_pred Ccc
Q 006185 167 SFC 169 (657)
Q Consensus 167 ~~~ 169 (657)
|.+
T Consensus 163 N~l 165 (220)
T 2v70_A 163 NPF 165 (220)
T ss_dssp CCE
T ss_pred cCC
Confidence 864
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=1.6e-15 Score=154.60 Aligned_cols=188 Identities=20% Similarity=0.195 Sum_probs=146.1
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhc-CCCCccEEEecCCcCCCCC-cc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQ-GMKDLKVLDLGGIRMVSPP-SS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~lp-~~ 81 (657)
+.....-|..+.+. -++++++++.++.+|..+. +.+++|++++|.+..++...|. ++++|++|++++|+++.++ ..
T Consensus 6 ~~~~~~Cp~~C~C~-~~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 83 (361)
T 2xot_A 6 GRSVVSCPANCLCA-SNILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83 (361)
T ss_dssp -CCCTTCCTTCEEE-TTEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred CCcCCCCCCCCEEC-CCEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence 33444456666664 3789999999999987652 4689999999999988887777 8999999999999998766 56
Q ss_pred ccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCchhHh---hcC
Q 006185 82 LSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIPPGVL---SRL 156 (657)
Q Consensus 82 ~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~~~~~---~~l 156 (657)
|.++++|++|++++|.....+ ..+.++.+|++|++++|.++.+ |..+.++++|++|++++ +.+..+|...+ ..+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----C
T ss_pred ccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccC
Confidence 889999999999999844444 5688999999999999999876 55689999999999999 56778887755 578
Q ss_pred ccCcEEEcccCccccccccccccccccchhhhcCCCC--ccEEEeecCCCc
Q 006185 157 RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSR--LTSLHIDIPKGE 205 (657)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 205 (657)
++|++|++++|.+.. .....+..++. ++.|++.+|...
T Consensus 163 ~~L~~L~L~~N~l~~-----------l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKK-----------LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCC-----------CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCc-----------cCHHHhhhccHhhcceEEecCCCcc
Confidence 999999999987652 23345666665 478899888754
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=155.97 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=128.1
Q ss_pred CCCCCcEEEecCCcCc-----CCCchhhcCCCCccEEEecCCcCC-CCCccc--cCCCCCcEEEccCCCCCCC-C----c
Q 006185 37 ECPKLQALFLQKNHLL-----VIPDPFFQGMKDLKVLDLGGIRMV-SPPSSL--SFLSNLRTLRLDYCNHLPD-L----S 103 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~--~~l~~L~~L~l~~~~~~~~-~----~ 103 (657)
....++.+.+.++.+. .+.. +..+++|++|++++|.+. ..|..+ .++++|++|++++|..... + .
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 3345677888777654 1111 224566888888888875 466666 7888888888888884332 1 3
Q ss_pred ccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCC--Cchh-HhhcCccCcEEEcccCcccccccccccc
Q 006185 104 LIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLEL--IPPG-VLSRLRKLEELYMSHSFCHWQFESEEDT 179 (657)
Q Consensus 104 ~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~g~~~~ 179 (657)
.+..+++|++|++++|.++.+| ..++.+++|++|++++|...+. ++.. .++.+++|++|++++|.+.. ..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~----- 213 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PT----- 213 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-----
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hH-----
Confidence 3457888888888888887665 4678888888888888643321 2211 13578888888888886531 00
Q ss_pred ccccchh-hhcCCCCccEEEeecCCCccC-CCC-CC---CCCccEEEEEEcCccChhhHHHHHhhcccccCcceEEeecc
Q 006185 180 RSNAKFI-ELGALSRLTSLHIDIPKGEIM-PSD-MS---LPNLTSFSITIGEEDTLNDFIELFLENFNKRCSRAMGLSQD 253 (657)
Q Consensus 180 ~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~-~~---l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 253 (657)
..+. -++.+++|++|++++|.+... |.. .. +++|+.|+++++.-... +..+. +.++.+++++|
T Consensus 214 ---~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-------p~~~~-~~L~~L~Ls~N 282 (310)
T 4glp_A 214 ---GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-------PKGLP-AKLRVLDLSSN 282 (310)
T ss_dssp ---HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-------CSCCC-SCCSCEECCSC
T ss_pred ---HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-------hhhhc-CCCCEEECCCC
Confidence 1112 246778888888888887655 333 22 36888888877643332 22222 67788888776
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=154.57 Aligned_cols=162 Identities=24% Similarity=0.331 Sum_probs=90.2
Q ss_pred CCCCCCCCCCCCCCccEEEccCCCccccCCCC---CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-
Q 006185 5 VELKDWPSINTFEDLTGISLMFNDIHEVPDGL---ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS- 80 (657)
Q Consensus 5 ~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~- 80 (657)
++++.+|. ...+.+++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|+|++|+++.++.
T Consensus 28 ~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 28 QQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp SCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 34555553 12344566666666666555432 45666666666666665555555666666666666666655443
Q ss_pred cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcccccc----cCCCCCCEEEccCCCCCCCCchhHhhc
Q 006185 81 SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVSF----GRLSHLRLLDLTDCYNLELIPPGVLSR 155 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~c~~~~~~~~~~~~~ 155 (657)
.|.++.+|++|++++|..... +..+.++++|++|++++|.++.+|..+ ..+++|++|++++ +.++.+|...+..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~ 185 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQK 185 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhh
Confidence 455666666666666653322 355666666666666666666665543 4566666666666 3455555544555
Q ss_pred Ccc--CcEEEcccCc
Q 006185 156 LRK--LEELYMSHSF 168 (657)
Q Consensus 156 l~~--L~~L~l~~~~ 168 (657)
++. ++.|++++|.
T Consensus 186 l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 186 LPAWVKNGLYLHNNP 200 (361)
T ss_dssp SCHHHHTTEECCSSC
T ss_pred ccHhhcceEEecCCC
Confidence 554 2556666554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=5.3e-15 Score=157.92 Aligned_cols=174 Identities=20% Similarity=0.277 Sum_probs=141.9
Q ss_pred CCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185 17 EDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~ 96 (657)
.++++|++++|.++.+|..+ +++|++|++++|.+..+| ..+++|++|++++|+++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 38999999999999988765 478999999999999888 347899999999999988888 766 9999999999
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccc
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESE 176 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~ 176 (657)
.....|. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. +. ++|++|++++|.+.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~------ 193 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE------ 193 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS------
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC------
Confidence 8555555 78999999999999999887 6789999999994 5667887 44 89999999998764
Q ss_pred cccccccchhhhcCCCCc-------cEEEeecCCCccCCCC-CCCCCccEEEEEEc
Q 006185 177 EDTRSNAKFIELGALSRL-------TSLHIDIPKGEIMPSD-MSLPNLTSFSITIG 224 (657)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~-~~l~~L~~L~l~~~ 224 (657)
..+. +.. +| +.|++++|.+..+|.. ..+++|+.|++.+|
T Consensus 194 ------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 194 ------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp ------SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred ------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 2222 333 55 9999999998888875 55788888888766
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.7e-16 Score=160.61 Aligned_cols=219 Identities=14% Similarity=0.102 Sum_probs=120.3
Q ss_pred CccEEEccCCCccccCCCC-CC--CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC--CCccccCCCCCcEEE
Q 006185 18 DLTGISLMFNDIHEVPDGL-EC--PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS--PPSSLSFLSNLRTLR 92 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~--lp~~~~~l~~L~~L~ 92 (657)
.+++++++++.+.. ... .+ +++++|+++++.+...+..+ .++++|++|++++|.++. ++..+.++++|++|+
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 35666666665541 111 22 56666777666666444443 456667777777666642 555666666777777
Q ss_pred ccCCCCC-CCCcccCCCCCCCEEEeeCC-CCC--cccccccCCCCCCEEEccCCCCCCC--CchhHhhcCc-cCcEEEcc
Q 006185 93 LDYCNHL-PDLSLIGELSGLEILDLSKS-DVN--EIPVSFGRLSHLRLLDLTDCYNLEL--IPPGVLSRLR-KLEELYMS 165 (657)
Q Consensus 93 l~~~~~~-~~~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~c~~~~~--~~~~~~~~l~-~L~~L~l~ 165 (657)
+++|... ..+..++++++|++|++++| .++ .+|..+.++++|++|++++|..++. ++.. +..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeC
Confidence 7766522 12455666667777777766 455 3555566666777777766534443 2332 56666 67777766
Q ss_pred cCccccccccccccccccchhhhcCCCCccEEEeecCC-Cc--cCCCCCCCCCccEEEEEEcCccChhhHHHHHhhcc-c
Q 006185 166 HSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK-GE--IMPSDMSLPNLTSFSITIGEEDTLNDFIELFLENF-N 241 (657)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~ 241 (657)
+|.... . ....+..+..+++|+.|++++|. +. .++....+++|+.|++.++.+..... ...+ .
T Consensus 204 ~~~~~~--~------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~ 270 (336)
T 2ast_B 204 GYRKNL--Q------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-----LLELGE 270 (336)
T ss_dssp SCGGGS--C------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-----GGGGGG
T ss_pred CCcccC--C------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-----HHHHhc
Confidence 663110 0 01334445566667777776665 22 12222455667777666553111111 1112 2
Q ss_pred ccCcceEEeecc
Q 006185 242 KRCSRAMGLSQD 253 (657)
Q Consensus 242 ~~~l~~l~l~~~ 253 (657)
.+.++.++++++
T Consensus 271 ~~~L~~L~l~~~ 282 (336)
T 2ast_B 271 IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEeccCc
Confidence 366777777766
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=1.4e-14 Score=137.31 Aligned_cols=141 Identities=26% Similarity=0.283 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
++++..+|. ...++|++|++++|.++.++.. + .+++|++|++++|.+..++...|.++++|++|++++|+++.++..
T Consensus 28 ~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 28 SKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 556788884 2349999999999999987543 4 899999999999999999988899999999999999999988754
Q ss_pred -ccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCC
Q 006185 82 -LSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL 145 (657)
Q Consensus 82 -~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~ 145 (657)
+..+++|++|++++|.....|..+.++++|++|++++|.++.+|.. +..+++|++|+++++...
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6899999999999999777889999999999999999999988854 889999999999996543
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=5e-15 Score=150.30 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=146.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCc-CCCchhhcCCCCccE-EEecCCcCCCC-
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLL-VIPDPFFQGMKDLKV-LDLGGIRMVSP- 78 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~-L~L~~~~~~~l- 78 (657)
+++++++|.- -.+++++|++++|.|+.+|... ++++|++|++++|.+. .++..+|.++++++. +.+.+|+++.+
T Consensus 18 ~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 18 ESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp STTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 4578888841 2478999999999999999764 8999999999999986 578888899998875 56667888877
Q ss_pred CccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCC-CCCccccc-ccCC-CCCCEEEccCCCCCCCCchhHhh
Q 006185 79 PSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKS-DVNEIPVS-FGRL-SHLRLLDLTDCYNLELIPPGVLS 154 (657)
Q Consensus 79 p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l-~~L~~L~l~~c~~~~~~~~~~~~ 154 (657)
|..|..+++|++|++++|.....+ ..+....++.+|++.++ .++.+|.. +..+ ..+++|++++ +.++.++.. ..
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f 174 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AF 174 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SS
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hc
Confidence 567899999999999999844444 34455566777777653 56666553 4444 3577788877 556677766 45
Q ss_pred cCccCcEEEcccC-ccccccccccccccccch-hhhcCCCCccEEEeecCCCccCCCCCCCCCccEEEEEE
Q 006185 155 RLRKLEELYMSHS-FCHWQFESEEDTRSNAKF-IELGALSRLTSLHIDIPKGEIMPSDMSLPNLTSFSITI 223 (657)
Q Consensus 155 ~l~~L~~L~l~~~-~~~~~~~g~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~ 223 (657)
...+|++|++.++ .+. .++ ..++.+++|+.|++++|.+..+|.. .+.+|++|.+..
T Consensus 175 ~~~~L~~l~l~~~n~l~------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~ 232 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARS 232 (350)
T ss_dssp TTEEEEEEECTTCTTCC------------CCCTTTTTTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTT
T ss_pred cccchhHHhhccCCccc------------CCCHHHhccCcccchhhcCCCCcCccChh-hhccchHhhhcc
Confidence 5667777777643 222 222 3456777788888888877777654 356666666543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.4e-14 Score=154.76 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=142.2
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcccc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLS 83 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~ 83 (657)
++++.++|.- .+++|++|++++|.++.+| ..+++|++|++++|.+..+|. |.+ +|++|++++|.++.+|.
T Consensus 68 ~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~--- 137 (571)
T 3cvr_A 68 RLNLSSLPDN-LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE--- 137 (571)
T ss_dssp SSCCSCCCSC-CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---
T ss_pred CCCCCccCHh-HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---
Confidence 5577788852 2489999999999999999 457899999999999999888 454 99999999999999988
Q ss_pred CCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccC----
Q 006185 84 FLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKL---- 159 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L---- 159 (657)
.+++|++|++++|.....|. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~ 206 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSE 206 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC---------
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhccc
Confidence 78999999999999555555 67899999999999999998 76 8999999999 46778886 443 66
Q ss_pred ---cEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 160 ---EELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 160 ---~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
+.|++++|.+. .++..+..+++|+.|++++|.+
T Consensus 207 ~~L~~L~Ls~N~l~------------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 207 ETEIFFRCRENRIT------------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCEEEECCSSCCC------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred ccceEEecCCCcce------------ecCHHHhcCCCCCEEEeeCCcC
Confidence 99999999775 5667788899999999999986
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.6e-16 Score=164.06 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=89.4
Q ss_pred CCCCCCccEEEccCCCccc-----cCCCC-CCCCCcEEEecCCcCc----CCCchh------hcCCCCccEEEecCCcCC
Q 006185 13 INTFEDLTGISLMFNDIHE-----VPDGL-ECPKLQALFLQKNHLL----VIPDPF------FQGMKDLKVLDLGGIRMV 76 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~----~~~~~~------~~~l~~Lr~L~L~~~~~~ 76 (657)
+..+++|++|++++|.++. ++..+ .+++|++|++++|.+. .+|..+ |..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3445556666666665542 22222 4556666666655333 222222 245566666666666554
Q ss_pred C-----CCccccCCCCCcEEEccCCCCCCC-C----cccCCC---------CCCCEEEeeCCCCC--ccc---ccccCCC
Q 006185 77 S-----PPSSLSFLSNLRTLRLDYCNHLPD-L----SLIGEL---------SGLEILDLSKSDVN--EIP---VSFGRLS 132 (657)
Q Consensus 77 ~-----lp~~~~~l~~L~~L~l~~~~~~~~-~----~~~~~l---------~~L~~L~l~~~~i~--~lp---~~i~~l~ 132 (657)
. +|..+.++++|++|++++|..... + ..+..+ ++|++|++++|.++ .+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 3 445555566666666666652111 1 122222 56666666666554 233 3445555
Q ss_pred CCCEEEccCCCCCCC-----CchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeecCCC
Q 006185 133 HLRLLDLTDCYNLEL-----IPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKG 204 (657)
Q Consensus 133 ~L~~L~l~~c~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (657)
+|++|++++|. ++. +....+.++++|++|++++|.+.... ....+..+..+++|+.|++++|.+
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCC
Confidence 66666666642 221 11111455566666666655432100 013344455555566666655554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.6e-14 Score=135.77 Aligned_cols=140 Identities=26% Similarity=0.338 Sum_probs=122.5
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS 80 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~ 80 (657)
++++++++|.- ..+++++|++++|.++.++... .+++|++|++++|.+..+++..|.++++|++|++++|.++.+|.
T Consensus 19 ~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 19 RGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp TTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence 35678888852 2389999999999999888743 89999999999999998877778999999999999999999886
Q ss_pred c-ccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCC
Q 006185 81 S-LSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCY 143 (657)
Q Consensus 81 ~-~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~ 143 (657)
. |..+++|++|++++|..... +..+.++++|++|++++|.++.+|.. +..+++|++|+++++.
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5 68999999999999995554 57899999999999999999988765 8899999999999954
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.5e-16 Score=156.85 Aligned_cols=195 Identities=22% Similarity=0.215 Sum_probs=158.2
Q ss_pred CCccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcC--CCchhhcCCCCccEEEecCCcCC-CCCccccCCCCCcEEE
Q 006185 17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLV--IPDPFFQGMKDLKVLDLGGIRMV-SPPSSLSFLSNLRTLR 92 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~-~lp~~~~~l~~L~~L~ 92 (657)
+++++|++++|.++..+... .+++|++|++++|.+.. ++. ++..+++|++|++++|.++ ..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 78999999999988665545 89999999999998763 444 5799999999999999987 5778889999999999
Q ss_pred ccCCCCCC---CCcccCCCCCCCEEEeeCC-CCCc--ccccccCCC-CCCEEEccCCC-CCC--CCchhHhhcCccCcEE
Q 006185 93 LDYCNHLP---DLSLIGELSGLEILDLSKS-DVNE--IPVSFGRLS-HLRLLDLTDCY-NLE--LIPPGVLSRLRKLEEL 162 (657)
Q Consensus 93 l~~~~~~~---~~~~~~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~l~~c~-~~~--~~~~~~~~~l~~L~~L 162 (657)
+++|..++ .+..++++++|++|++++| .++. ++..+..++ +|++|++++|. .++ .++.. +.++++|++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEE
Confidence 99995455 3466889999999999999 8884 778899999 99999999974 343 34543 7889999999
Q ss_pred EcccCc-cccccccccccccccchhhhcCCCCccEEEeecCC-C--ccCCCCCCCCCccEEEEEEc
Q 006185 163 YMSHSF-CHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPK-G--EIMPSDMSLPNLTSFSITIG 224 (657)
Q Consensus 163 ~l~~~~-~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~--~~~~~~~~l~~L~~L~l~~~ 224 (657)
++++|. +.. ..+..+..+++|+.|++++|. . ..+.....+++|+.|++.++
T Consensus 228 ~l~~~~~l~~-----------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 228 DLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCG-----------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCcCCH-----------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999986 322 456678889999999999985 2 11112356899999999865
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=135.00 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=123.5
Q ss_pred CCCCCCCCCCCCCCCCccEEEccCCCccccCC-C-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC
Q 006185 3 AGVELKDWPSINTFEDLTGISLMFNDIHEVPD-G-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP 79 (657)
Q Consensus 3 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp 79 (657)
++++++++|. ...+.+++|++++|.++.++. . + .+++|++|++++|.+..+++..|.++++|++|++++|.++.++
T Consensus 19 s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 97 (220)
T 2v70_A 19 SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97 (220)
T ss_dssp CSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC
Confidence 3567788884 235678999999999998843 3 3 8999999999999999888877899999999999999998876
Q ss_pred c-cccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCC
Q 006185 80 S-SLSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLEL 147 (657)
Q Consensus 80 ~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~ 147 (657)
. .|..+++|++|++++|..... |..+.++++|++|++++|.++.+ |..+..+++|++|+++++.....
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 5 589999999999999995554 58899999999999999999987 67899999999999999654433
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=2.6e-15 Score=153.26 Aligned_cols=204 Identities=15% Similarity=0.177 Sum_probs=147.9
Q ss_pred CCCCCccEEEccCCCccccCC-----CC-CCC-CCcEEEecCCcCcCCCchhhcCC-----CCccEEEecCCcCCCCC-c
Q 006185 14 NTFEDLTGISLMFNDIHEVPD-----GL-ECP-KLQALFLQKNHLLVIPDPFFQGM-----KDLKVLDLGGIRMVSPP-S 80 (657)
Q Consensus 14 ~~~~~L~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~~~~lp-~ 80 (657)
...++|++|++++|.++..+. .+ .++ +|++|++++|.+.......|..+ ++|++|++++|.++..+ .
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 344569999999999987764 23 677 89999999999886655445554 99999999999987543 3
Q ss_pred c----ccCC-CCCcEEEccCCCCCCCC-c----ccCCC-CCCCEEEeeCCCCC-----cccccccCCC-CCCEEEccCCC
Q 006185 81 S----LSFL-SNLRTLRLDYCNHLPDL-S----LIGEL-SGLEILDLSKSDVN-----EIPVSFGRLS-HLRLLDLTDCY 143 (657)
Q Consensus 81 ~----~~~l-~~L~~L~l~~~~~~~~~-~----~~~~l-~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~c~ 143 (657)
. +..+ ++|++|++++|.....+ . .+..+ .+|++|++++|.++ .++..+..+. +|++|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 2 4455 89999999999943333 2 24453 69999999999888 4556666776 99999999964
Q ss_pred CCCCCchhHh----hcC-ccCcEEEcccCccccccccccccccccchhhhcC-CCCccEEEeecCCCccCCC------CC
Q 006185 144 NLELIPPGVL----SRL-RKLEELYMSHSFCHWQFESEEDTRSNAKFIELGA-LSRLTSLHIDIPKGEIMPS------DM 211 (657)
Q Consensus 144 ~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~------~~ 211 (657)
++......+ ... ++|++|++++|.+.... ....+..+.. .++|+.|++++|.+...+. ..
T Consensus 179 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 179 -LASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp -GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred -CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 544443223 344 69999999999765311 1134556666 4599999999998765443 15
Q ss_pred CCCCccEEEEEEcC
Q 006185 212 SLPNLTSFSITIGE 225 (657)
Q Consensus 212 ~l~~L~~L~l~~~~ 225 (657)
.+++|+.|+++++.
T Consensus 251 ~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 251 SLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTCSEEEEEHHH
T ss_pred cCCCccEEEeccCC
Confidence 67889999998763
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.9e-16 Score=163.41 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCCCCcEEEecCCcCcCCCc----hhhcCCCCccEEEecCCcCCC----CCccc-------cCCCCCcEEEccCCCCCC-
Q 006185 37 ECPKLQALFLQKNHLLVIPD----PFFQGMKDLKVLDLGGIRMVS----PPSSL-------SFLSNLRTLRLDYCNHLP- 100 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~L~~~~~~~----lp~~~-------~~l~~L~~L~l~~~~~~~- 100 (657)
.+++|++|++++|.+..... ..|..+++|++|++++|.+.. +|..+ .++++|++|++++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45556666666665542111 113455666666666554432 22222 445555555555555222
Q ss_pred ----CCcccCCCCCCCEEEeeCCCCC
Q 006185 101 ----DLSLIGELSGLEILDLSKSDVN 122 (657)
Q Consensus 101 ----~~~~~~~l~~L~~L~l~~~~i~ 122 (657)
.+..+.++++|++|++++|.++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 1234445555555555555543
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=2.6e-15 Score=153.25 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=101.9
Q ss_pred EEccCCCccc-cCCCC-CCCCCcEEEecCCcCcCCCc----hhhcCCC-CccEEEecCCcCCCC-CccccCC-----CCC
Q 006185 22 ISLMFNDIHE-VPDGL-ECPKLQALFLQKNHLLVIPD----PFFQGMK-DLKVLDLGGIRMVSP-PSSLSFL-----SNL 88 (657)
Q Consensus 22 L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~~~~l-p~~~~~l-----~~L 88 (657)
..++.|.++. +|... ..++|++|++++|.+...+. ..|.+++ +|++|++++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566777663 34333 33458888888888776665 5567777 788888888877543 4445443 778
Q ss_pred cEEEccCCCCCCCC-c----ccCCC-CCCCEEEeeCCCCCccccc-----ccC-CCCCCEEEccCCCCCCC-----Cchh
Q 006185 89 RTLRLDYCNHLPDL-S----LIGEL-SGLEILDLSKSDVNEIPVS-----FGR-LSHLRLLDLTDCYNLEL-----IPPG 151 (657)
Q Consensus 89 ~~L~l~~~~~~~~~-~----~~~~l-~~L~~L~l~~~~i~~lp~~-----i~~-l~~L~~L~l~~c~~~~~-----~~~~ 151 (657)
++|++++|.....+ . .+..+ ++|++|++++|.++..+.. +.. .++|++|++++|. ++. ++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH
Confidence 88888887733222 2 24444 6777888877777644331 333 2577777777743 332 2222
Q ss_pred HhhcCc-cCcEEEcccCccccccccccccccccchhhhcCC-CCccEEEeecCCC
Q 006185 152 VLSRLR-KLEELYMSHSFCHWQFESEEDTRSNAKFIELGAL-SRLTSLHIDIPKG 204 (657)
Q Consensus 152 ~~~~l~-~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 204 (657)
+..++ +|++|++++|.+..... ......+... ++|+.|++++|.+
T Consensus 162 -l~~~~~~L~~L~Ls~n~l~~~~~-------~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 -LAAIPANVNSLNLRGNNLASKNC-------AELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp -HHTSCTTCCEEECTTSCGGGSCH-------HHHHHHHHTSCTTCCEEECTTSCG
T ss_pred -HhcCCccccEeeecCCCCchhhH-------HHHHHHHHhCCCCCCEEECCCCCC
Confidence 34444 77777777775532111 0222334444 3677777666654
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=1.3e-14 Score=130.49 Aligned_cols=123 Identities=23% Similarity=0.190 Sum_probs=59.6
Q ss_pred CCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185 17 EDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR 92 (657)
Q Consensus 17 ~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~ 92 (657)
+++++|++++|.++ .+|..+ .+++|++|++++|.+..+ ..|..+++|++|++++|.++. +|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 454443 455555555555554444 224455555555555555544 444444455555555
Q ss_pred ccCCCCCCCC--cccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEccC
Q 006185 93 LDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDLTD 141 (657)
Q Consensus 93 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~ 141 (657)
+++|.....+ ..++++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 5555422222 344445555555555554444443 344444444444444
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=5.9e-17 Score=174.07 Aligned_cols=193 Identities=22% Similarity=0.234 Sum_probs=138.9
Q ss_pred CCCCCCccEEEccCCCccccCCCC-CCCCCcEEEecCCc-------------CcCCCchhhcCCCCccEEE-ecCCcCCC
Q 006185 13 INTFEDLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNH-------------LLVIPDPFFQGMKDLKVLD-LGGIRMVS 77 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~Lr~L~-L~~~~~~~ 77 (657)
+..+++|+.|+++.|.++.+|..+ .+++|+.|++++|. ....++..++.+++|+.|+ ++.+.+..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 356789999999999999999887 88899999987664 3334444567777787777 45443322
Q ss_pred CCc------cccC--CCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCc
Q 006185 78 PPS------SLSF--LSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIP 149 (657)
Q Consensus 78 lp~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~ 149 (657)
++. .+.. ...|++|++++|.....|. ++++++|++|++++|.++.+|..++++++|++|++++ +.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc
Confidence 221 1111 1248888888887545554 8888888888888888888888888888888888888 4566677
Q ss_pred hhHhhcCccCcEEEcccCccccccccccccccccc-hhhhcCCCCccEEEeecCCCccCCCC-----CCCCCccEEE
Q 006185 150 PGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAK-FIELGALSRLTSLHIDIPKGEIMPSD-----MSLPNLTSFS 220 (657)
Q Consensus 150 ~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~l~~L~~L~ 220 (657)
. ++++++|++|++++|.+.. .. +..++.+++|+.|++++|.+..++.. ..+++|+.|+
T Consensus 503 -~-l~~l~~L~~L~Ls~N~l~~-----------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -G-VANLPRLQELLLCNNRLQQ-----------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -G-GTTCSSCCEEECCSSCCCS-----------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -c-cCCCCCCcEEECCCCCCCC-----------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 4 7888888888888886542 22 67788888888888888887666554 2256777664
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.8e-14 Score=126.56 Aligned_cols=121 Identities=22% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCccEEEccCCCcc--ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCccccCCCCCcEEE
Q 006185 17 EDLTGISLMFNDIH--EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPSSLSFLSNLRTLR 92 (657)
Q Consensus 17 ~~L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~~~~~l~~L~~L~ 92 (657)
+++++|++++|.++ .+|..+ .+++|++|++++|.+..+ ..|..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555554 455443 455555555555555444 224555555555555555544 444444455555555
Q ss_pred ccCCCCCCCC--cccCCCCCCCEEEeeCCCCCcccc----cccCCCCCCEEEc
Q 006185 93 LDYCNHLPDL--SLIGELSGLEILDLSKSDVNEIPV----SFGRLSHLRLLDL 139 (657)
Q Consensus 93 l~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l 139 (657)
+++|.....+ ..++.+++|++|++++|.++.+|. .+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555422211 344444444444444444444333 2444444444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=1e-13 Score=124.48 Aligned_cols=127 Identities=24% Similarity=0.269 Sum_probs=71.7
Q ss_pred CCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEE
Q 006185 39 PKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILD 115 (657)
Q Consensus 39 ~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 115 (657)
++|++|++++|.+. .+|.. |..+++|++|++++|.++.+ ..+..+++|++|++++|.... .|..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 55543 45666666666666666555 555666666666666666333 334444566666666
Q ss_pred eeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCch---hHhhcCccCcEEEcccCc
Q 006185 116 LSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMSHSF 168 (657)
Q Consensus 116 l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~~~~ 168 (657)
+++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 6666666554 45556666666666653 3334443 234555555555555543
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.2e-14 Score=129.85 Aligned_cols=128 Identities=15% Similarity=0.120 Sum_probs=69.0
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCC-CccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcc-cCCCCCCCEE
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMK-DLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSL-IGELSGLEIL 114 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 114 (657)
.+.+|++|++++|.+..++. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.....|.. ++.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 44555555555555554433 22222 555555555555544 4455555555555555553333322 3556666666
Q ss_pred EeeCCCCCcccc--cccCCCCCCEEEccCCCCCCCCchh---HhhcCccCcEEEcccCc
Q 006185 115 DLSKSDVNEIPV--SFGRLSHLRLLDLTDCYNLELIPPG---VLSRLRKLEELYMSHSF 168 (657)
Q Consensus 115 ~l~~~~i~~lp~--~i~~l~~L~~L~l~~c~~~~~~~~~---~~~~l~~L~~L~l~~~~ 168 (657)
++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|+++++.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666665555 5566666666666663 33444442 35666666666666654
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=8.1e-14 Score=122.39 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=79.1
Q ss_pred CCCCcEEEecCCcCc--CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEE
Q 006185 38 CPKLQALFLQKNHLL--VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEIL 114 (657)
Q Consensus 38 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L 114 (657)
.++|++|++++|.+. .+|. .|..+++|++|++++|.++.+ ..++++++|++|++++|.... .|..++++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777766 5554 346677777777777776665 566667777777777776444 34555556777777
Q ss_pred EeeCCCCCccc--ccccCCCCCCEEEccCCCCCCCCch---hHhhcCccCcEEEcc
Q 006185 115 DLSKSDVNEIP--VSFGRLSHLRLLDLTDCYNLELIPP---GVLSRLRKLEELYMS 165 (657)
Q Consensus 115 ~l~~~~i~~lp--~~i~~l~~L~~L~l~~c~~~~~~~~---~~~~~l~~L~~L~l~ 165 (657)
++++|.++.+| ..++.+++|++|++++| .++.++. ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 77777666554 55666677777777664 3444443 335666666666653
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=4.2e-13 Score=123.18 Aligned_cols=137 Identities=21% Similarity=0.252 Sum_probs=108.8
Q ss_pred CCCCCCCCccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCch-hhcCCCCccEEEecCCcCCCC-CccccCCCCC
Q 006185 11 PSINTFEDLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDP-FFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNL 88 (657)
Q Consensus 11 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L 88 (657)
|..+.+.. ++++++++.++.+|..+. .++++|++++|.+..++.. +|.++++|++|++++|+++.+ |..|.++++|
T Consensus 3 P~~C~C~~-~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 3 PAMCHCEG-TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp CTTSEEET-TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCCEECC-CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 33444443 789999999999987653 3899999999998877764 578999999999999999876 6788999999
Q ss_pred cEEEccCCCCCCCC-cccCCCCCCCEEEeeCCCCCcc-cccccCCCCCCEEEccCCCCCCCCc
Q 006185 89 RTLRLDYCNHLPDL-SLIGELSGLEILDLSKSDVNEI-PVSFGRLSHLRLLDLTDCYNLELIP 149 (657)
Q Consensus 89 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~c~~~~~~~ 149 (657)
++|++++|.....+ ..++++++|++|++++|.++.+ |..+..+++|++|+++++......+
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999844433 5688899999999999998855 6678889999999998865443433
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=4.9e-14 Score=127.59 Aligned_cols=131 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred CCCCCCCCCccEEEccCCCccccCCCCCCC-CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc-cCCCC
Q 006185 10 WPSINTFEDLTGISLMFNDIHEVPDGLECP-KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL-SFLSN 87 (657)
Q Consensus 10 ~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~-~~l~~ 87 (657)
.+.+..+.++++|++++|.++.++....+. +|++|++++|.+..++ .|..+++|++|++++|.++.+|..+ ..+++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 344555667777777777777665544333 7777777777766652 2567777777777777776666444 67777
Q ss_pred CcEEEccCCCCCCCCc--ccCCCCCCCEEEeeCCCCCccccc----ccCCCCCCEEEccCC
Q 006185 88 LRTLRLDYCNHLPDLS--LIGELSGLEILDLSKSDVNEIPVS----FGRLSHLRLLDLTDC 142 (657)
Q Consensus 88 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~c 142 (657)
|++|++++|.....|. .++.+++|++|++++|.++.+|.. +..+++|++|+++++
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 7777777776433343 566777777777777777766664 667777777777664
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=1e-12 Score=119.06 Aligned_cols=127 Identities=24% Similarity=0.287 Sum_probs=101.1
Q ss_pred CccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~ 96 (657)
..+.++++++.++.+|... .++|++|++++|.+..++...|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3578888888888888554 36889999999988888887788899999999999988877654 688888889988888
Q ss_pred CCCCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCC
Q 006185 97 NHLPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNL 145 (657)
Q Consensus 97 ~~~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~ 145 (657)
.....+ ..++++++|++|++++|.++.+|.. +.++++|++|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 855554 4467888888888888888887776 477888888888885443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=8.5e-13 Score=121.06 Aligned_cols=121 Identities=25% Similarity=0.374 Sum_probs=77.6
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~ 98 (657)
++++++++.++.+|..+ .++|++|++++|.+..+|. .|.++++|++|++++|.++.++ ..|.++++|++|++++|..
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56777777777777544 2467777777777776664 3567777777777777776654 3566677777777776663
Q ss_pred CCCC-cccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCC
Q 006185 99 LPDL-SLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDC 142 (657)
Q Consensus 99 ~~~~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c 142 (657)
...+ ..++++++|++|++++|.++.+|.. +..+++|++|+++++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 3333 4566666666666666666666553 556666666666653
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=119.74 Aligned_cols=125 Identities=24% Similarity=0.311 Sum_probs=111.2
Q ss_pred cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeCCC
Q 006185 42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSKSD 120 (657)
Q Consensus 42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 120 (657)
++++++++.+..+|..+ .++|++|++++|+++.+|..|.++++|++|++++|.....+ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 68999999999999865 36899999999999999999999999999999999955554 679999999999999999
Q ss_pred CCcccc-cccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 121 VNEIPV-SFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 121 i~~lp~-~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
++.+|. .+..+++|++|++++ +.++.+|..++..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998875 599999999999999 5677888877889999999999998653
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=1.7e-13 Score=151.97 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=93.8
Q ss_pred CCccEEEccCCCccccCCCC-CCCCCcEEEec-----CCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcE
Q 006185 17 EDLTGISLMFNDIHEVPDGL-ECPKLQALFLQ-----KNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRT 90 (657)
Q Consensus 17 ~~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~ 90 (657)
+.++.|++..|.+...+... ...+|+.+.+. .+.+. +++..|..++.|++|+|++|.+..+|..+.++++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 56788888888887766544 44444444433 33333 5555678889999999999988888888888999999
Q ss_pred EEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccc
Q 006185 91 LRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 91 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
|+|++|.....|..++++++|++|+|++|.++.+|..++++++|++|++++| .++.+|.. ++++++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999988666788888999999999999998888888999999999999884 56788887 888999999999888664
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=1e-12 Score=120.57 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=97.5
Q ss_pred cEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc--ccCCCCCcEEEccCCCCCCC-CcccCCCCCCCEEEeeC
Q 006185 42 QALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS--LSFLSNLRTLRLDYCNHLPD-LSLIGELSGLEILDLSK 118 (657)
Q Consensus 42 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 118 (657)
++++++++.+..+|..++ .+|++|++++|.++.++.. ++++++|++|++++|..... |..++++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 788899988888888653 3889999999988877653 88899999999998884444 57788889999999999
Q ss_pred CCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 119 SDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 119 ~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
|.++.++.. +..+++|++|+++++ .++.++...+..+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 888876654 788888888888884 45555444477888888888888754
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=1.2e-13 Score=153.33 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=111.9
Q ss_pred CCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCC
Q 006185 33 PDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGL 111 (657)
Q Consensus 33 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 111 (657)
+..+ .+++|++|++++|.+..+|..+| ++++|++|+|++|.++.+|..|+++++|++|+|++|.....|..++++++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3334 78999999999999999998875 899999999999999999999999999999999999977788999999999
Q ss_pred CEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCcc-CcEEEcccCcc
Q 006185 112 EILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRK-LEELYMSHSFC 169 (657)
Q Consensus 112 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~-L~~L~l~~~~~ 169 (657)
++|++++|.++.+|..|+++++|++|++++|...+.+|.. +..+.. +..+++++|.+
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcc
Confidence 9999999999999999999999999999996544444443 544321 22355666643
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.8e-12 Score=130.26 Aligned_cols=190 Identities=20% Similarity=0.186 Sum_probs=143.4
Q ss_pred CCCccEEEccCCCcc--------------------ccCCCC--C--------CCCCcEEEecCCcCcCCCchhhcCCCCc
Q 006185 16 FEDLTGISLMFNDIH--------------------EVPDGL--E--------CPKLQALFLQKNHLLVIPDPFFQGMKDL 65 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 65 (657)
+++|++|+|++|.+. .+|+.. + |++|+.+.+.+ .+..+++..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999999887 455554 6 89999999988 7778888889999999
Q ss_pred cEEEecCCcCCCCC-ccccCCCCCcEEEccCCC-----------------CCC--------------------CCc----
Q 006185 66 KVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCN-----------------HLP--------------------DLS---- 103 (657)
Q Consensus 66 r~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~-----------------~~~--------------------~~~---- 103 (657)
+.++++++.+..++ ..|..+.++.++...... .++ .+.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999998876654 466777777777655411 000 000
Q ss_pred -------------cc-CCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCc-EEEcccC
Q 006185 104 -------------LI-GELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLE-ELYMSHS 167 (657)
Q Consensus 104 -------------~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~-~L~l~~~ 167 (657)
.+ ..+.+|+.+++.++.++.+|+. |.++.+|+.+++.++ ++.++..++.++.+|+ .+++.+.
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPAS 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEccc
Confidence 00 0278899999999889988875 888999999999884 7788888889999999 9998763
Q ss_pred ccccccccccccccccchhhhcCCCCccEEEeecCCCccCCCC--CCCCCccEEE
Q 006185 168 FCHWQFESEEDTRSNAKFIELGALSRLTSLHIDIPKGEIMPSD--MSLPNLTSFS 220 (657)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~l~~L~~L~ 220 (657)
+.. -....+.++++|+.+++..+.+..++.. .++++|+.++
T Consensus 285 -l~~-----------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 285 -VTA-----------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -CCE-----------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred -ceE-----------EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 221 3346788899999999988888888775 6778888765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1.3e-11 Score=111.69 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc
Q 006185 4 GVELKDWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS 81 (657)
Q Consensus 4 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~ 81 (657)
++++..+| ....+++++|++++|.++.++... .+++|++|++++|.+..++...|.++++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 16 SKGLTSVP-TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp SSCCSSCC-TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCccCC-CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH
Confidence 55677887 334589999999999999888754 789999999999999999988889999999999999999987764
Q ss_pred -ccCCCCCcEEEccCCCCCCCCc-ccCCCCCCCEEEeeCCCCCcc
Q 006185 82 -LSFLSNLRTLRLDYCNHLPDLS-LIGELSGLEILDLSKSDVNEI 124 (657)
Q Consensus 82 -~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l 124 (657)
+..+++|++|++++|.....|. .+.++++|++|++++|.+...
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 7899999999999999666664 468899999999999987743
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=5.2e-12 Score=135.65 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=106.9
Q ss_pred CCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeC
Q 006185 39 PKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSK 118 (657)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 118 (657)
..|++|++++|.+..+|. |+.+++|++|++++|.++.+|..++++++|++|++++|.....| .++++++|++|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 369999999999999987 79999999999999999999999999999999999999955555 899999999999999
Q ss_pred CCCCcc--cccccCCCCCCEEEccCCCCCCCCchh---HhhcCccCcEEEc
Q 006185 119 SDVNEI--PVSFGRLSHLRLLDLTDCYNLELIPPG---VLSRLRKLEELYM 164 (657)
Q Consensus 119 ~~i~~l--p~~i~~l~~L~~L~l~~c~~~~~~~~~---~~~~l~~L~~L~l 164 (657)
|.++.+ |..++.+++|++|++++| .+...|.. .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 999988 899999999999999995 45555432 2455899999864
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=3e-11 Score=108.56 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=58.0
Q ss_pred cEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCCCC
Q 006185 20 TGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYCNH 98 (657)
Q Consensus 20 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 98 (657)
+.+++++|.++.+|..+. ++|++|++++|.+..+++..|.++++|++|+|++|+++.+|.. |.++++|++|++++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 556666666666665443 5666666666666665555556666666666666666655543 35555555555555553
Q ss_pred CCCCc-ccCCCCCCCEEEeeCCCCCc
Q 006185 99 LPDLS-LIGELSGLEILDLSKSDVNE 123 (657)
Q Consensus 99 ~~~~~-~~~~l~~L~~L~l~~~~i~~ 123 (657)
...|. .++++++|++|++++|.+..
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ceeCHHHhccccCCCEEEeCCCCccc
Confidence 33332 24455555555555554443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=6.5e-14 Score=129.51 Aligned_cols=103 Identities=23% Similarity=0.299 Sum_probs=51.5
Q ss_pred CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEe
Q 006185 37 ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDL 116 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 116 (657)
.+++|++|++++|.+..+| .|.++++|++|++++|.++.+|..+..+++|++|++++|. ++.+..++++++|++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEE
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEEC
Confidence 4455555555555555544 2455555555555555555555544445555555555554 222224444555555555
Q ss_pred eCCCCCcccc--cccCCCCCCEEEccCC
Q 006185 117 SKSDVNEIPV--SFGRLSHLRLLDLTDC 142 (657)
Q Consensus 117 ~~~~i~~lp~--~i~~l~~L~~L~l~~c 142 (657)
++|.++.+|. .+.++++|++|++++|
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 5555554433 3445555555555553
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.3e-13 Score=127.56 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=111.7
Q ss_pred CCcEEEecCC--cCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEee
Q 006185 40 KLQALFLQKN--HLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLS 117 (657)
Q Consensus 40 ~L~~L~l~~~--~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 117 (657)
.++...+.+. .+..+|.. |..+++|++|++++|.++.+| .+.++++|++|++++|.....|..++.+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 4555666554 34455554 689999999999999998888 8889999999999999866667777778899999999
Q ss_pred CCCCCcccccccCCCCCCEEEccCCCCCCCCch-hHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccE
Q 006185 118 KSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPP-GVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTS 196 (657)
Q Consensus 118 ~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~ 196 (657)
+|.++.+| .+.++++|++|++++ +.+..++. ..+..+++|++|++++|.+....... ..........+..+++|+.
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSE
T ss_pred CCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEE
Confidence 99999887 688899999999998 45666554 34788999999999988653210000 0000011223677788887
Q ss_pred EE
Q 006185 197 LH 198 (657)
Q Consensus 197 L~ 198 (657)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=7.1e-11 Score=105.78 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=55.9
Q ss_pred ccEEEccCCCccccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCcc-ccCCCCCcEEEccCCC
Q 006185 19 LTGISLMFNDIHEVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSS-LSFLSNLRTLRLDYCN 97 (657)
Q Consensus 19 L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 97 (657)
.+++++++|.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|+++.+|.. |.++++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3556666666666665442 5566666666666655555556666666666666666555443 3455555555555555
Q ss_pred CCCCC-cccCCCCCCCEEEeeCCCCC
Q 006185 98 HLPDL-SLIGELSGLEILDLSKSDVN 122 (657)
Q Consensus 98 ~~~~~-~~~~~l~~L~~L~l~~~~i~ 122 (657)
....+ ..+.++++|++|++++|.++
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 33333 23444555555555554433
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1.6e-10 Score=103.82 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=82.7
Q ss_pred CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCCc-ccCCCCCCCEEEeeC
Q 006185 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDLS-LIGELSGLEILDLSK 118 (657)
Q Consensus 41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 118 (657)
-++++++++.+..+|..+ .++|++|++++|+++.+ |..|.++++|++|++++|.....|. .++++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 377888888888888765 37888999999988876 5678888889999998888555554 467888888888888
Q ss_pred CCCCccccc-ccCCCCCCEEEccCCCCCCCCc
Q 006185 119 SDVNEIPVS-FGRLSHLRLLDLTDCYNLELIP 149 (657)
Q Consensus 119 ~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~ 149 (657)
|.++.+|.. +.++++|++|+++++ .+...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 888888776 888888888888884 444444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=2.9e-10 Score=101.78 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=68.4
Q ss_pred CcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEeeC
Q 006185 41 LQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLSK 118 (657)
Q Consensus 41 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 118 (657)
.++++++++.+..+|..+ .++|++|++++|+++.+ |..|.++++|++|++++|.....+ ..+.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777777654 36777777777777766 456777777777777777744444 3456777777777777
Q ss_pred CCCCccccc-ccCCCCCCEEEccCC
Q 006185 119 SDVNEIPVS-FGRLSHLRLLDLTDC 142 (657)
Q Consensus 119 ~~i~~lp~~-i~~l~~L~~L~l~~c 142 (657)
|.++.+|.. +.++++|++|+++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 777766654 667777777777773
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=2.4e-10 Score=114.62 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=134.9
Q ss_pred CCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC----CCCC-ccc------
Q 006185 16 FEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM----VSPP-SSL------ 82 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~----~~lp-~~~------ 82 (657)
+++|+.|++.. .++.|++.. +|++|++++++++.+..+++..|.++.++.++....... ..+. ..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 89999999998 899998876 899999999999999889999999988888887665211 0000 000
Q ss_pred --------------------------------------------cCCCCCcEEEccCCCCCCCC-cccCCCCCCCEEEee
Q 006185 83 --------------------------------------------SFLSNLRTLRLDYCNHLPDL-SLIGELSGLEILDLS 117 (657)
Q Consensus 83 --------------------------------------------~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 117 (657)
..+.+|+++++++|.....+ ..|.++.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 13789999999998855554 679999999999999
Q ss_pred CCCCCccccc-ccCCCCCC-EEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCcc
Q 006185 118 KSDVNEIPVS-FGRLSHLR-LLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLT 195 (657)
Q Consensus 118 ~~~i~~lp~~-i~~l~~L~-~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~ 195 (657)
++ ++.+++. |.++.+|+ .+++.+ .++.++..++.++++|+.+++.++.+.. -....+.++++|+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~-----------I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT-----------LGDELFGNGVPSK 324 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE-----------ECTTTTCTTCCCC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc-----------cchhhhcCCcchh
Confidence 97 8877765 89999999 999988 5778888889999999999998776542 3345688899999
Q ss_pred EEEe
Q 006185 196 SLHI 199 (657)
Q Consensus 196 ~L~l 199 (657)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 8763
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=9.8e-09 Score=105.16 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=68.3
Q ss_pred CccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEcc
Q 006185 18 DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLD 94 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~ 94 (657)
+|+.+.+.. .++.+.... +|++|+.+++.++.+..++...|. ..+|+.+.+..+ ++.++ ..|.+|.+|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 456666553 455555443 566666666666655566655554 356666666532 44433 345556666666665
Q ss_pred CCCCCC-CCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCCEEEccCCCCCC-----CCchhHhhcCccCcEEEcc
Q 006185 95 YCNHLP-DLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLRLLDLTDCYNLE-----LIPPGVLSRLRKLEELYMS 165 (657)
Q Consensus 95 ~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~c~~~~-----~~~~~~~~~l~~L~~L~l~ 165 (657)
.+- .. ....|.+ .+|+.+.+. +.++.++. .|.++++|+.+++.++ ... .++..++..+++|+.+.+.
T Consensus 235 ~~l-~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 235 ENV-STIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTC-CEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred CCc-cCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC
Confidence 432 11 1133333 445555552 23343322 2445555555555442 111 2444444455555555544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=4.3e-09 Score=107.83 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=63.1
Q ss_pred CccEEEccCCCccccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCC
Q 006185 18 DLTGISLMFNDIHEVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 18 ~L~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~ 96 (657)
+|+.+.+..+ ++.+.... .-.+|+.+.+.+ .+..+....|.++++|+.+++..+.++.++...-.+.+|+.+.+..+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 3455554333 44444333 112455555543 33344444455555555555555555444433223445555555432
Q ss_pred CCCC-CCcccCCCCCCCEEEeeCCCCCccccc-ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccC
Q 006185 97 NHLP-DLSLIGELSGLEILDLSKSDVNEIPVS-FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHS 167 (657)
Q Consensus 97 ~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~ 167 (657)
- .. ....|.++.+|+.+++..+ ++.++.. +.+ .+|+.+.+.+ .+..++..++.++++|+.+++.++
T Consensus 214 l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 214 L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence 1 11 1244445555555555442 3333332 223 4455555532 234444444455555555555443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.88 E-value=2e-08 Score=103.28 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=69.5
Q ss_pred ccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCCCCccc
Q 006185 29 IHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLI 105 (657)
Q Consensus 29 ~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~ 105 (657)
+++|.+.+ +|.+|+.+.+..+ +..+.+..|.++.+|+.+++..+ ++.++ ..|.++.+|+.+.+..+-..-....+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 45666555 6777887777643 55677777777788887777644 44443 35666777766655433211112333
Q ss_pred CCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEccc
Q 006185 106 GELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSH 166 (657)
Q Consensus 106 ~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~ 166 (657)
.++..++..... .+..+. ..+.++++|+.+.+.+ .+..++..++..+.+|+.+.+..
T Consensus 137 ~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 137 KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred ecccccccccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 333322222111 112221 2355566666666544 13344444455566666655543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=3.3e-10 Score=114.95 Aligned_cols=159 Identities=17% Similarity=0.113 Sum_probs=101.3
Q ss_pred CCCCcEEEecCCcCcCCCchhhc-----CCCCccEEEecCCcCCC--CCccccCCCCCcEEEccCCCCCCCC--ccc---
Q 006185 38 CPKLQALFLQKNHLLVIPDPFFQ-----GMKDLKVLDLGGIRMVS--PPSSLSFLSNLRTLRLDYCNHLPDL--SLI--- 105 (657)
Q Consensus 38 ~~~L~~L~l~~~~~~~~~~~~~~-----~l~~Lr~L~L~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~--~~~--- 105 (657)
.++|++|++++|.+.......|. ..++|++|+|++|.++. ...-...+.+|++|++++|. +++. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 35788888888887632222222 23688888888887752 22222345678888888887 4321 222
Q ss_pred --CCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCCCCCCc----hhHhhcCccCcEEEcccCccccccc
Q 006185 106 --GELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYNLELIP----PGVLSRLRKLEELYMSHSFCHWQFE 174 (657)
Q Consensus 106 --~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~ 174 (657)
...++|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-
Confidence 346778888888888763 45556778888888888854 44322 122566778888888888654211
Q ss_pred cccccccccchhhhcCCCCccEEEeecCCCc
Q 006185 175 SEEDTRSNAKFIELGALSRLTSLHIDIPKGE 205 (657)
Q Consensus 175 g~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (657)
.......+...++|++|++++|.++
T Consensus 228 ------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1144455666778888888888763
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=1.2e-08 Score=103.19 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=60.3
Q ss_pred EEEccCC-CccccCCCC-CCCCCcEEEecC-CcCcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCC
Q 006185 21 GISLMFN-DIHEVPDGL-ECPKLQALFLQK-NHLLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYC 96 (657)
Q Consensus 21 ~L~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~ 96 (657)
.++++++ .++.+|. + .+++|++|++++ |.+..+++..|.++++|++|+|++|+++.++ ..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777776 5 666777777765 6666666666677777777777777666543 34566666666666666
Q ss_pred CCCCCCcccCCCCCCCEEEeeCCCCC
Q 006185 97 NHLPDLSLIGELSGLEILDLSKSDVN 122 (657)
Q Consensus 97 ~~~~~~~~~~~l~~L~~L~l~~~~i~ 122 (657)
.....|..+.....|++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 64444432222222555555555444
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=1.9e-07 Score=96.05 Aligned_cols=133 Identities=13% Similarity=0.103 Sum_probs=85.9
Q ss_pred CcCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccCCCCCC-CCcccCCCCCCCEEEeeCCCCCcccc-c
Q 006185 51 LLVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDYCNHLP-DLSLIGELSGLEILDLSKSDVNEIPV-S 127 (657)
Q Consensus 51 ~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~-~ 127 (657)
++++.+..|.++++|+.+.+..+ +++++ .+|.+|.+|+.+++..+- .. ....+.++.+|+.+.+..+ +..+.. .
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l-~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSV-KMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCc-eEccchhhcccccchhhcccCc-eeeeccee
Confidence 44788888999999999999743 66664 468889999999997552 22 2366778888887766543 333332 3
Q ss_pred ccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCccccccccccccccccchhhhcCCCCccEEEeec
Q 006185 128 FGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFCHWQFESEEDTRSNAKFIELGALSRLTSLHIDI 201 (657)
Q Consensus 128 i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~l~~ 201 (657)
+..+..+....... ...+...++.++.+|+.+.+..+... -....+..+.+|+.+.+..
T Consensus 136 F~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 136 FKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCT
T ss_pred eecccccccccCcc---ccccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCC
Confidence 55554444333322 34455555888999999988654221 2234566777888777654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=2.7e-10 Score=115.57 Aligned_cols=153 Identities=15% Similarity=0.062 Sum_probs=113.5
Q ss_pred CCCccEEEccCCCcccc-----CCCC--CCCCCcEEEecCCcCcC-CCchhhcCCCCccEEEecCCcCCC-----CCccc
Q 006185 16 FEDLTGISLMFNDIHEV-----PDGL--ECPKLQALFLQKNHLLV-IPDPFFQGMKDLKVLDLGGIRMVS-----PPSSL 82 (657)
Q Consensus 16 ~~~L~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~~ 82 (657)
++.+++|++++|.++.. ...+ ..++|++|++++|.+.. -...++..+++|++|+|++|.++. +...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999998742 2222 34799999999998862 222334557799999999999863 22233
Q ss_pred -cCCCCCcEEEccCCCCCCC------CcccCCCCCCCEEEeeCCCCCc-----ccccccCCCCCCEEEccCCCCCCCCch
Q 006185 83 -SFLSNLRTLRLDYCNHLPD------LSLIGELSGLEILDLSKSDVNE-----IPVSFGRLSHLRLLDLTDCYNLELIPP 150 (657)
Q Consensus 83 -~~l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~c~~~~~~~~ 150 (657)
....+|++|++++|. ++. +..+...++|++|++++|.++. ++..+...++|++|++++|. ++....
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 357889999999998 432 2455789999999999999873 45667888999999999964 443221
Q ss_pred h----HhhcCccCcEEEcccCccc
Q 006185 151 G----VLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 151 ~----~~~~l~~L~~L~l~~~~~~ 170 (657)
. ++...++|++|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 1 2456799999999999765
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.7e-08 Score=102.06 Aligned_cols=93 Identities=18% Similarity=0.087 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCccEEEccC-CCccccCCC-C-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCccc
Q 006185 6 ELKDWPSINTFEDLTGISLMF-NDIHEVPDG-L-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPSSL 82 (657)
Q Consensus 6 ~l~~~~~~~~~~~L~~L~l~~-~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~ 82 (657)
++..+|.+..+++|++|+|++ |.++.++.. + .+++|++|++++|.+..+++..|.++++|++|+|++|+++.+|..+
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 788999988899999999996 999998864 4 8999999999999999998888999999999999999999988765
Q ss_pred cCCCCCcEEEccCCCC
Q 006185 83 SFLSNLRTLRLDYCNH 98 (657)
Q Consensus 83 ~~l~~L~~L~l~~~~~ 98 (657)
.....|++|++.+|..
T Consensus 100 ~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPL 115 (347)
T ss_dssp TCSCCCCEEECCSSCC
T ss_pred cccCCceEEEeeCCCc
Confidence 4444499999999983
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.54 E-value=3.6e-08 Score=86.64 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=54.8
Q ss_pred CCccEEEEecCCCcceecccchhhcccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc
Q 006185 492 GNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF 571 (657)
Q Consensus 492 ~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l 571 (657)
..|+.|++++|. +++..... +..+++|++|++++|..+++- ++..+... ...+++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~---~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG-----CLERLSQL---ENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH-----HHHHHHTC---HHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH-----HHHHHHhc---ccccCCCCEEEcCCCCcCCHH
Confidence 467888888876 66643333 356777777777777776532 33222210 001346777777777777764
Q ss_pred ccCCCcceeeccccceeeeccCCCcce
Q 006185 572 SSSGLHATVEFLALEALQIIDCPGMKT 598 (657)
Q Consensus 572 ~~~~~~~~~~~~sL~~L~i~~C~~l~~ 598 (657)
....+. .+++|++|++++|+++++
T Consensus 131 Gl~~L~---~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALH---HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGG---GCTTCCEEEEESCTTCCC
T ss_pred HHHHHh---cCCCCCEEECCCCCCCCc
Confidence 311122 456777777777776665
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=6e-08 Score=85.22 Aligned_cols=92 Identities=14% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCccEEEeccCcccccccccccccccchhhhhhhcccccceeecccccCCCCCCCCCCccEEEEecCCCcceecccchhh
Q 006185 436 HNLKKVRVEECDELRQVFPANLGKKAAAEEMVLYRNRRYQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVK 515 (657)
Q Consensus 436 ~~L~~L~i~~C~~L~~~~~~~l~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~ 515 (657)
..|++|++++|. +++.... .+..+++|++|++++|..+++-....+.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-------------------------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~ 108 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-------------------------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQ 108 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-------------------------------GGTTCSCCCEEEEESCTTCCHHHHHHHHT
T ss_pred ceEeEEeCcCCC-ccHHHHH-------------------------------HhcCCCCCCEEEeCCCCccCHHHHHHHHh
Confidence 468999999986 6653111 12367899999999999998864443333
Q ss_pred ---cccCCcEEEEecCCCcceeeeCcCceecccCCCcceEeccccCeeEcCcCCCcccc
Q 006185 516 ---SLVRLESLEVSSCPTLQEIIMDDEGEVGLQGASTKKITFPSLFSIKLCDLGSLTCF 571 (657)
Q Consensus 516 ---~l~~L~~L~i~~C~~l~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~l 571 (657)
..++|++|+|++|+++++ .|+.++. .+++|++|++++|+++++.
T Consensus 109 ~~~~~~~L~~L~Ls~C~~ITD-----~Gl~~L~-------~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 109 LENLQKSMLEMEIISCGNVTD-----KGIIALH-------HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp CHHHHHHCCEEEEESCTTCCH-----HHHHHGG-------GCTTCCEEEEESCTTCCCH
T ss_pred cccccCCCCEEEcCCCCcCCH-----HHHHHHh-------cCCCCCEEECCCCCCCCch
Confidence 135799999999999874 3553333 4899999999999999874
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=3.1e-07 Score=92.26 Aligned_cols=128 Identities=25% Similarity=0.301 Sum_probs=58.7
Q ss_pred CCCCCcEEEecCCcCc---------CCCchhhcCCCCccEEEecCCcCCCCCccccCCCCCcEEEccCCCCCCC--Cccc
Q 006185 37 ECPKLQALFLQKNHLL---------VIPDPFFQGMKDLKVLDLGGIRMVSPPSSLSFLSNLRTLRLDYCNHLPD--LSLI 105 (657)
Q Consensus 37 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~ 105 (657)
.+++|+.|.+.+.... .-...++..+++|+.|+++++.-..++. + .+.+|+.|++..|. +.. ...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHH
Confidence 4567777766443211 0111334566666666666653122333 2 25666666666554 221 1222
Q ss_pred C--CCCCCCEEEeeCC--C------CCcccccc--cCCCCCCEEEccCCCCCCCCchhHhh---cCccCcEEEcccCc
Q 006185 106 G--ELSGLEILDLSKS--D------VNEIPVSF--GRLSHLRLLDLTDCYNLELIPPGVLS---RLRKLEELYMSHSF 168 (657)
Q Consensus 106 ~--~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~l~~c~~~~~~~~~~~~---~l~~L~~L~l~~~~ 168 (657)
+ ++++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+.. +. .+++|++|+++.|.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCC
Confidence 2 5666666666421 0 11111111 23556666666654332222221 22 35556666665554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=2.3e-07 Score=93.18 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=103.5
Q ss_pred CCCCCCccEEEccCCCcc----------ccCCCC-CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCC-CCc
Q 006185 13 INTFEDLTGISLMFNDIH----------EVPDGL-ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVS-PPS 80 (657)
Q Consensus 13 ~~~~~~L~~L~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~-lp~ 80 (657)
+.++++|+.|.+...... .+.... .+++|+.|.++++.-..++. +. +++|++|++..+.+.. ...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence 456789999998765332 122222 68999999999884335555 33 8999999999888742 222
Q ss_pred ccc--CCCCCcEEEccCCC--CCCC-----C-ccc--CCCCCCCEEEeeCCCCCc-ccccc---cCCCCCCEEEccCCCC
Q 006185 81 SLS--FLSNLRTLRLDYCN--HLPD-----L-SLI--GELSGLEILDLSKSDVNE-IPVSF---GRLSHLRLLDLTDCYN 144 (657)
Q Consensus 81 ~~~--~l~~L~~L~l~~~~--~~~~-----~-~~~--~~l~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~L~l~~c~~ 144 (657)
.+. .+++|++|+|+.+. ...+ . ..+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.| .
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence 333 78999999986421 1111 1 122 358999999999998872 22222 35789999999884 4
Q ss_pred CCCC-----chhHhhcCccCcEEEcccCccc
Q 006185 145 LELI-----PPGVLSRLRKLEELYMSHSFCH 170 (657)
Q Consensus 145 ~~~~-----~~~~~~~l~~L~~L~l~~~~~~ 170 (657)
++.. +.. +..+++|+.|++++|.+.
T Consensus 291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 291 LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 5542 222 356899999999988654
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=4.7e-05 Score=77.95 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc---CCCCC-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEE
Q 006185 40 KLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR---MVSPP-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILD 115 (657)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 115 (657)
.|+.+.+..+ +..+.+..|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+-..-....+..+.+|+.+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhccccccc
Confidence 3666666543 445666666666666666665542 33332 345555555555544332111123445555555555
Q ss_pred eeCCCCCcccc-cccCCCCCCEEEccC
Q 006185 116 LSKSDVNEIPV-SFGRLSHLRLLDLTD 141 (657)
Q Consensus 116 l~~~~i~~lp~-~i~~l~~L~~L~l~~ 141 (657)
+... ++.++. .+..+.+|+.+.+.+
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred ccce-eeeecccceecccccccccccc
Confidence 5432 222222 244455555555543
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=5.5e-05 Score=77.48 Aligned_cols=155 Identities=14% Similarity=0.120 Sum_probs=106.7
Q ss_pred CCCCC--CCCCCC-CccEEEccCCCccccCCCC--CCCCCcEEEecCCc---CcCCCchhhcCCCCccEEEecCCcCCCC
Q 006185 7 LKDWP--SINTFE-DLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNH---LLVIPDPFFQGMKDLKVLDLGGIRMVSP 78 (657)
Q Consensus 7 l~~~~--~~~~~~-~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~---~~~~~~~~~~~l~~Lr~L~L~~~~~~~l 78 (657)
++++. ++..++ .|+.+.+.. .++.|.+.. +|.+|+.+.+..+. +..+....|.++..|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 34444 355564 589998864 478887766 89999999998763 55788888999999998877654 4444
Q ss_pred C-ccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccccccCCCCCCEEEccCCCCCCCCchhHhhcCc
Q 006185 79 P-SSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLR 157 (657)
Q Consensus 79 p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~ 157 (657)
+ ..|..+.+|+.+.+...-..-....+..+.+|+.+.+..+ ++.+....-...+|+.+.+... +..+...++..+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~ 205 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECF 205 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCT
T ss_pred hhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhcc
Confidence 4 4678999999999976542223467888999999998764 5555444223456888877652 3344444466677
Q ss_pred cCcEEEccc
Q 006185 158 KLEELYMSH 166 (657)
Q Consensus 158 ~L~~L~l~~ 166 (657)
.+.......
T Consensus 206 ~l~~~~~~~ 214 (394)
T 4gt6_A 206 ALSTITSDS 214 (394)
T ss_dssp TCCEEEECC
T ss_pred ccceecccc
Confidence 777666543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=2.4e-06 Score=77.13 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=61.0
Q ss_pred hcCCCCccEEEecCC-cCCC-----CCccccCCCCCcEEEccCCCCCCC------CcccCCCCCCCEEEeeCCCCCc---
Q 006185 59 FQGMKDLKVLDLGGI-RMVS-----PPSSLSFLSNLRTLRLDYCNHLPD------LSLIGELSGLEILDLSKSDVNE--- 123 (657)
Q Consensus 59 ~~~l~~Lr~L~L~~~-~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~------~~~~~~l~~L~~L~l~~~~i~~--- 123 (657)
+...+.|++|+|++| .+.. +...+...++|++|+|++|. +.+ ...+...++|++|++++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 445555666666655 5531 33444555566666666665 332 1334445666777777776662
Q ss_pred --ccccccCCCCCCEEEc--cCCCCCCC-----CchhHhhcCccCcEEEcccCcc
Q 006185 124 --IPVSFGRLSHLRLLDL--TDCYNLEL-----IPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 124 --lp~~i~~l~~L~~L~l--~~c~~~~~-----~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
+...+...++|++|++ ++ +.++. +.. .+...+.|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4555666677777777 55 33433 222 245557788888877754
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=4e-06 Score=75.68 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCCCcEEEecCC-cCcC-----CCchhhcCCCCccEEEecCCcCCC-----CCccccCCCCCcEEEccCCCCCCC----
Q 006185 37 ECPKLQALFLQKN-HLLV-----IPDPFFQGMKDLKVLDLGGIRMVS-----PPSSLSFLSNLRTLRLDYCNHLPD---- 101 (657)
Q Consensus 37 ~~~~L~~L~l~~~-~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~---- 101 (657)
..+.|++|++++| .+.+ +.. .+...++|++|+|++|.+.. +...+...++|++|++++|. +.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 3455566666555 4431 111 23445555666666555531 33344444555666666555 222
Q ss_pred --CcccCCCCCCCEEEe--eCCCCCc-----ccccccCCCCCCEEEccC
Q 006185 102 --LSLIGELSGLEILDL--SKSDVNE-----IPVSFGRLSHLRLLDLTD 141 (657)
Q Consensus 102 --~~~~~~l~~L~~L~l--~~~~i~~-----lp~~i~~l~~L~~L~l~~ 141 (657)
...+...++|++|++ ++|.++. +.+.+...++|++|++++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 234445555666666 5555541 333344445556665555
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=1.6e-06 Score=82.35 Aligned_cols=78 Identities=23% Similarity=0.237 Sum_probs=51.6
Q ss_pred cCCCCccEEEecCCcCCCC---CccccCCCCCcEEEccCCCCCCCCcccCCCC--CCCEEEeeCCCCC-ccc-------c
Q 006185 60 QGMKDLKVLDLGGIRMVSP---PSSLSFLSNLRTLRLDYCNHLPDLSLIGELS--GLEILDLSKSDVN-EIP-------V 126 (657)
Q Consensus 60 ~~l~~Lr~L~L~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~-~lp-------~ 126 (657)
.++++|++|+|++|+++.+ |..+..+++|++|+|++|. ++....+..+. +|++|++++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777777777777654 3455677777777777777 44434444444 7888888888776 344 2
Q ss_pred cccCCCCCCEEE
Q 006185 127 SFGRLSHLRLLD 138 (657)
Q Consensus 127 ~i~~l~~L~~L~ 138 (657)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366788888885
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=2.4e-05 Score=74.18 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=71.9
Q ss_pred hcCCCCccE--EEecCCcCCCCCc----cccCCCCCcEEEccCCCCCCC---CcccCCCCCCCEEEeeCCCCCccccccc
Q 006185 59 FQGMKDLKV--LDLGGIRMVSPPS----SLSFLSNLRTLRLDYCNHLPD---LSLIGELSGLEILDLSKSDVNEIPVSFG 129 (657)
Q Consensus 59 ~~~l~~Lr~--L~L~~~~~~~lp~----~~~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp~~i~ 129 (657)
|...+.|+. ++++.|....++. ...++++|++|+|++|..... +..++++++|++|+|++|.++.+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 344455554 5566664333222 225688999999999993332 24556899999999999999876 3355
Q ss_pred CCC--CCCEEEccCCCCCCCCc------hhHhhcCccCcEEE
Q 006185 130 RLS--HLRLLDLTDCYNLELIP------PGVLSRLRKLEELY 163 (657)
Q Consensus 130 ~l~--~L~~L~l~~c~~~~~~~------~~~~~~l~~L~~L~ 163 (657)
.++ +|++|++++|...+.+| ..++..+++|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 555 99999999976554454 23477899999987
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.66 E-value=0.0057 Score=61.94 Aligned_cols=126 Identities=10% Similarity=0.101 Sum_probs=73.0
Q ss_pred CCCCCCCCCCccEEEccCCCccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcCCCCCc-cccCC
Q 006185 9 DWPSINTFEDLTGISLMFNDIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRMVSPPS-SLSFL 85 (657)
Q Consensus 9 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~~~~l 85 (657)
..|......+++.+.+. ..++.|++.. +|.+|+.+.+..+ +..+.+..|.++ +|..+.+..+ ++.+.. .|..
T Consensus 38 ~~~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~- 112 (379)
T 4h09_A 38 NIPWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG- 112 (379)
T ss_dssp GSTTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-
T ss_pred cccccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-
Confidence 34555666778888874 4577777765 7888888888654 557777778777 5776666543 444443 3333
Q ss_pred CCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCccc-ccccCCCCCCEEEccC
Q 006185 86 SNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIP-VSFGRLSHLRLLDLTD 141 (657)
Q Consensus 86 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~ 141 (657)
.+|+.+.+..+-..-....+.+. +|+...+... ++.+. ..+..+.+++...+..
T Consensus 113 ~~L~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 113 TDLDDFEFPGATTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred CCcccccCCCccccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence 36888877654311112333333 4555544432 33222 2355666666665554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.89 E-value=0.0065 Score=61.50 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=51.6
Q ss_pred hhcCCCCccEEEecCCcCCCC-CccccCCCCCcEEEccCCCCCCCCcccCCCCCCCEEEeeCCCCCcccc-cccCCCCCC
Q 006185 58 FFQGMKDLKVLDLGGIRMVSP-PSSLSFLSNLRTLRLDYCNHLPDLSLIGELSGLEILDLSKSDVNEIPV-SFGRLSHLR 135 (657)
Q Consensus 58 ~~~~l~~Lr~L~L~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~ 135 (657)
.|.....|+.+.+..+ +..+ ...+.++.+|+.+.+..+-..-....+.++.+|+.+.+.. .++.++. .+..+.+|+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 3455555665555433 2222 2344555566666555432111124455555566665543 2444433 255556666
Q ss_pred EEEccCCCCCCCCchhHhhcCccCcEEEcc
Q 006185 136 LLDLTDCYNLELIPPGVLSRLRKLEELYMS 165 (657)
Q Consensus 136 ~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~ 165 (657)
.+.+.+ ..++.++..++.++.+|+.+.+.
T Consensus 290 ~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 666554 33445555555566666666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0034 Score=52.32 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=40.6
Q ss_pred cEEEccCCCcc--ccCCCCCCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCcC
Q 006185 20 TGISLMFNDIH--EVPDGLECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIRM 75 (657)
Q Consensus 20 ~~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~~ 75 (657)
++++.+++.++ .+|..+- ++|++|+|++|.+..++..+|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 46777777777 7776532 3578888888888888877777788888887777754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.70 E-value=0.056 Score=44.78 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=35.4
Q ss_pred EEEeeCCCCC--cccccccCCCCCCEEEccCCCCCCCCchhHhhcCccCcEEEcccCcc
Q 006185 113 ILDLSKSDVN--EIPVSFGRLSHLRLLDLTDCYNLELIPPGVLSRLRKLEELYMSHSFC 169 (657)
Q Consensus 113 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~l~~~~~ 169 (657)
+++-++.+++ .+|..+. .+|++|++++ +.++.++.+++..+++|+.|+|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666666 6665443 3577777777 556677766667777777777777643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.44 E-value=0.023 Score=50.73 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred cccCCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccCCC--CCCC
Q 006185 81 SLSFLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTDCY--NLEL 147 (657)
Q Consensus 81 ~~~~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~c~--~~~~ 147 (657)
.+..-..|+.|+|++|. +.+. ..+..-+.|++|+|++|.|+ .+-+.+..-+.|++|+++++. .++.
T Consensus 65 aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 33344445555555554 2221 22333455666666666555 233344455567777776532 2221
Q ss_pred -----CchhHhhcCccCcEEEcccCc
Q 006185 148 -----IPPGVLSRLRKLEELYMSHSF 168 (657)
Q Consensus 148 -----~~~~~~~~l~~L~~L~l~~~~ 168 (657)
+.. ++..-+.|..|+++.+.
T Consensus 144 ~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 111 24445677777776553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.33 E-value=0.04 Score=49.10 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=31.3
Q ss_pred CCCCCcEEEccCCCCCCCC------cccCCCCCCCEEEeeCCCCC-----cccccccCCCCCCEEEccC
Q 006185 84 FLSNLRTLRLDYCNHLPDL------SLIGELSGLEILDLSKSDVN-----EIPVSFGRLSHLRLLDLTD 141 (657)
Q Consensus 84 ~l~~L~~L~l~~~~~~~~~------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~ 141 (657)
+-..|++|+|++++.+.+. ..+..-..|+.|+|++|.+. .+.+.+..-+.|++|++++
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 3455666666654223321 34445566777777777665 2333344445666666666
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.36 E-value=36 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=20.3
Q ss_pred cCCCchhhcCCCCccEEEecCCcCCCCC-ccccCCCCCcEEEccC
Q 006185 52 LVIPDPFFQGMKDLKVLDLGGIRMVSPP-SSLSFLSNLRTLRLDY 95 (657)
Q Consensus 52 ~~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~~~~l~~L~~L~l~~ 95 (657)
+.+....|.++..|+.+.+..+ ++.+. ..|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455555555555555555443 22222 2444555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.28 E-value=31 Score=26.43 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=32.5
Q ss_pred CccccCCCC--CCCCCcEEEecCCcCcCCCchhhcCCCCccEEEecCCc
Q 006185 28 DIHEVPDGL--ECPKLQALFLQKNHLLVIPDPFFQGMKDLKVLDLGGIR 74 (657)
Q Consensus 28 ~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 74 (657)
.++.|.+.. +|.+|+.+.+..+ +..+.+..|.++.+|+.+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 455666555 7788888888665 456777778888888888887653
Done!