Query 006186
Match_columns 657
No_of_seqs 368 out of 2017
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 1E-115 3E-120 983.6 32.5 404 212-651 7-413 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 9E-113 2E-117 972.6 31.9 408 215-651 18-430 (743)
3 KOG1157 Predicted guanosine po 100.0 2E-111 4E-116 885.4 33.2 467 130-642 6-474 (543)
4 PRK11092 bifunctional (p)ppGpp 100.0 4E-109 9E-114 942.8 33.7 406 214-651 4-412 (702)
5 TIGR00691 spoT_relA (p)ppGpp s 100.0 2E-103 4E-108 897.5 31.2 383 236-651 1-386 (683)
6 PF13328 HD_4: HD domain; PDB: 100.0 4.5E-40 9.7E-45 312.0 5.6 152 236-391 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 100.0 1.7E-29 3.7E-34 232.6 11.9 119 428-547 2-129 (129)
8 PF04607 RelA_SpoT: Region fou 100.0 4.6E-30 1E-34 231.2 7.2 108 449-558 1-114 (115)
9 COG2357 PpGpp synthetase catal 99.9 2.9E-27 6.3E-32 237.6 12.7 141 444-587 52-205 (231)
10 TIGR03276 Phn-HD phosphonate d 98.2 3.2E-06 6.9E-11 83.8 7.4 72 244-315 13-103 (179)
11 PRK14707 hypothetical protein; 95.3 0.085 1.8E-06 67.5 10.5 107 446-558 2306-2424(2710)
12 PF01966 HD: HD domain; Inter 94.5 0.049 1.1E-06 47.6 4.3 33 256-288 2-41 (122)
13 smart00471 HDc Metal dependent 94.2 0.11 2.3E-06 44.7 5.8 38 252-289 2-45 (124)
14 TIGR03401 cyanamide_fam HD dom 93.0 0.77 1.7E-05 47.5 10.5 127 226-373 34-181 (228)
15 cd00077 HDc Metal dependent ph 92.5 0.29 6.2E-06 42.8 5.7 35 254-288 2-44 (145)
16 PRK09169 hypothetical protein; 90.5 0.91 2E-05 59.3 9.1 122 431-558 1900-2034(2316)
17 PRK12703 tRNA 2'-O-methylase; 90.3 2.4 5.1E-05 46.6 11.0 148 232-401 171-331 (339)
18 PRK14707 hypothetical protein; 86.3 2.6 5.7E-05 54.9 9.1 194 355-557 2416-2654(2710)
19 TIGR00295 conserved hypothetic 81.8 7 0.00015 38.2 8.3 58 252-309 11-86 (164)
20 COG1418 Predicted HD superfami 79.6 3.1 6.6E-05 42.9 5.2 40 251-290 33-77 (222)
21 PRK10119 putative hydrolase; P 79.6 7 0.00015 40.7 7.8 52 232-286 6-62 (231)
22 COG4341 Predicted HD phosphohy 71.4 6.2 0.00013 39.4 4.6 35 250-284 24-60 (186)
23 PRK03826 5'-nucleotidase; Prov 65.7 14 0.00031 37.5 6.1 35 253-287 27-72 (195)
24 TIGR00277 HDIG uncharacterized 62.7 12 0.00026 30.5 4.1 35 253-287 3-42 (80)
25 COG1896 Predicted hydrolases o 57.4 39 0.00084 34.3 7.5 98 251-359 30-141 (193)
26 PF13023 HD_3: HD domain; PDB: 56.3 31 0.00066 33.8 6.4 96 252-360 20-129 (165)
27 PF12917 HD_2: HD containing h 52.9 13 0.00028 38.5 3.3 101 253-360 28-143 (215)
28 COG1078 HD superfamily phospho 52.9 8 0.00017 43.7 1.9 30 256-285 53-96 (421)
29 PRK00106 hypothetical protein; 48.8 19 0.00041 42.0 4.1 37 251-287 347-388 (535)
30 TIGR00488 putative HD superfam 48.7 19 0.00042 34.6 3.6 34 253-286 7-45 (158)
31 COG1713 Predicted HD superfami 47.3 21 0.00046 36.3 3.7 37 253-289 16-57 (187)
32 PRK14137 recX recombination re 47.1 22 0.00049 36.1 3.9 101 393-500 38-147 (195)
33 PRK12704 phosphodiesterase; Pr 46.7 54 0.0012 38.1 7.4 36 252-287 333-373 (520)
34 PRK14136 recX recombination re 46.3 18 0.00039 39.4 3.2 46 452-501 226-271 (309)
35 COG1710 Uncharacterized protei 43.3 29 0.00062 33.1 3.6 82 398-479 26-123 (139)
36 PRK12705 hypothetical protein; 43.2 89 0.0019 36.4 8.3 37 251-287 320-361 (508)
37 PF05153 DUF706: Family of unk 42.3 41 0.0009 35.6 5.0 53 232-284 40-93 (253)
38 PRK12720 secretion system appa 41.5 2.4E+02 0.0052 34.1 11.6 202 252-480 440-666 (675)
39 PRK01286 deoxyguanosinetriphos 39.4 31 0.00067 38.0 3.8 33 254-286 62-99 (336)
40 TIGR03319 YmdA_YtgF conserved 39.0 1E+02 0.0022 35.9 8.0 35 252-286 327-366 (514)
41 KOG1573 Aldehyde reductase [Ge 38.1 1.1E+02 0.0025 30.8 7.0 53 232-284 74-127 (204)
42 COG2316 Predicted hydrolase (H 37.7 54 0.0012 33.2 4.7 61 252-312 45-120 (212)
43 cd08318 Death_NMPP84 Death dom 37.5 1.4E+02 0.0031 26.2 7.0 73 366-443 6-79 (86)
44 PF14907 NTP_transf_5: Unchara 36.1 1.7E+02 0.0036 29.5 8.3 132 385-541 12-148 (249)
45 PRK07152 nadD putative nicotin 35.1 38 0.00082 36.9 3.6 35 253-287 195-234 (342)
46 COG0079 HisC Histidinol-phosph 34.8 1.8E+02 0.0039 32.1 8.8 113 386-498 219-352 (356)
47 cd08780 Death_TRADD Death Doma 33.5 1.6E+02 0.0036 26.8 6.7 75 367-443 2-81 (90)
48 PRK12792 flhA flagellar biosyn 32.7 2.3E+02 0.005 34.4 9.7 119 271-402 480-608 (694)
49 TIGR03812 tyr_de_CO2_Arch tyro 31.4 2.3E+02 0.005 30.1 8.8 70 427-496 294-372 (373)
50 COG1578 Uncharacterized conser 30.0 2.8E+02 0.0061 30.1 8.8 112 353-468 12-139 (285)
51 PRK15337 type III secretion sy 29.5 2E+02 0.0044 34.8 8.6 126 263-401 465-602 (686)
52 PRK06645 DNA polymerase III su 28.8 9.9E+02 0.022 27.9 15.3 94 286-393 240-337 (507)
53 TIGR01399 hrcV type III secret 28.8 1.5E+02 0.0032 35.9 7.3 130 260-401 452-593 (677)
54 PRK05318 deoxyguanosinetriphos 28.5 43 0.00093 38.1 2.8 56 231-286 30-106 (432)
55 PRK13520 L-tyrosine decarboxyl 27.9 3.3E+02 0.0071 28.8 9.2 72 427-498 289-369 (371)
56 PRK13480 3'-5' exoribonuclease 27.8 60 0.0013 35.4 3.6 32 255-286 160-197 (314)
57 KOG0260 RNA polymerase II, lar 27.6 2.9E+02 0.0062 35.7 9.4 8 126-133 1571-1578(1605)
58 PRK03007 deoxyguanosinetriphos 26.9 1.1E+02 0.0023 35.1 5.4 58 229-286 40-107 (428)
59 PF07091 FmrO: Ribosomal RNA m 25.5 2.2E+02 0.0049 30.3 7.2 142 364-511 7-166 (251)
60 COG2733 Predicted membrane pro 24.7 7.7E+02 0.017 28.2 11.3 89 351-443 109-202 (415)
61 PRK09111 DNA polymerase III su 23.1 1.3E+03 0.028 27.6 13.6 64 288-364 243-310 (598)
62 KOG3220 Similar to bacterial d 22.8 1.9E+02 0.0041 30.3 5.8 38 262-303 17-57 (225)
63 PHA03246 large tegument protei 22.3 3.6E+02 0.0078 37.3 9.2 161 277-483 934-1109(3095)
64 TIGR01398 FlhA flagellar biosy 21.6 4.1E+02 0.0089 32.3 9.1 118 272-401 467-594 (678)
65 PF00903 Glyoxalase: Glyoxalas 21.3 1.8E+02 0.0039 24.9 4.8 54 473-534 73-128 (128)
66 COG0466 Lon ATP-dependent Lon 21.2 6.3E+02 0.014 31.1 10.4 85 341-438 159-243 (782)
67 COG3934 Endo-beta-mannanase [C 20.5 68 0.0015 37.3 2.3 47 602-655 280-331 (587)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=1.4e-115 Score=983.58 Aligned_cols=404 Identities=43% Similarity=0.677 Sum_probs=381.1
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCC
Q 006186 212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291 (657)
Q Consensus 212 ~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT 291 (657)
..+.++++.+..+.+..+.. +.+|+.+|.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t 85 (701)
T COG0317 7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT 85 (701)
T ss_pred ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence 34567777777777766666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHH
Q 006186 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR 370 (657)
Q Consensus 292 ~eeI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq 370 (657)
.++|++.||++|++||+||||++++.++. .....|+|++|||+|||. |+||++|||||||||||||..+++++|
T Consensus 86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999999999985321 223458999999999997 999999999999999999999889999
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCcceeccc
Q 006186 371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLC 448 (657)
Q Consensus 371 ~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~ 448 (657)
+++|+||++|||||||||||+++|||||||||+||+|++|+.|.+.|.++ .|+.++++++..|+..|.++||.++ |.
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~ 239 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS 239 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence 99999999999999999999999999999999999999999999999987 4899999999999999999999996 99
Q ss_pred ccccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCC
Q 006186 449 GRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG 528 (657)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~ 528 (657)
||+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.
T Consensus 240 gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~ 319 (701)
T COG0317 240 GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPE 319 (701)
T ss_pred cCCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 006186 529 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHAD 608 (657)
Q Consensus 529 g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~~ 608 (657)
|.++||||||.+||..||+|+||||+||++.. ...+.+.||++|+|||++..| +.+|++++|.+ +||
T Consensus 320 g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf~---- 386 (701)
T COG0317 320 GKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LFP---- 386 (701)
T ss_pred CceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-ccC----
Confidence 99999999999999999999999999999872 346789999999999999888 57999999999 999
Q ss_pred CCCcccCCCCCCCCCEEEEEEeCCcccceeccccceeceeeee
Q 006186 609 DCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYM 651 (657)
Q Consensus 609 dc~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~~~~~~~~~~ 651 (657)
|.+|+|||+ | .|.+||++..++||+|+
T Consensus 387 d~VyvfTPk----G------------~vi~LP~GatplDFAY~ 413 (701)
T COG0317 387 DRVYVFTPK----G------------KVIDLPKGATPLDFAYA 413 (701)
T ss_pred ceEEEECCC----C------------CEEeCCCCCcchhhhhh
Confidence 999999999 6 57799999999999997
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=8.7e-113 Score=972.58 Aligned_cols=408 Identities=31% Similarity=0.527 Sum_probs=374.1
Q ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHH
Q 006186 215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294 (657)
Q Consensus 215 ~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~ee 294 (657)
++|+..+..+. ..+.+.|++|+.||.++|.| |++|+|||.||++||.||++++||.++|+||||||++|||.+|.++
T Consensus 18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~ 94 (743)
T PRK10872 18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDV 94 (743)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHH
Confidence 45555555555 56778999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHHH
Q 006186 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRF 373 (657)
Q Consensus 295 I~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~ri 373 (657)
|++.||++||.||+||||++++....+.........|+|+||||||||+ |+||+||||||||||||||..+|++||+++
T Consensus 95 i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~i 174 (743)
T PRK10872 95 LRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLA 174 (743)
T ss_pred HHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 9999999999999999999998542211101123458999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCcceecccccc
Q 006186 374 AKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRH 451 (657)
Q Consensus 374 A~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~ 451 (657)
|+|||+|||||||||||++||||||||||+||+|+.|+.|+++|.++ .|+.+++.+++.|++.|++.||.++ |.||+
T Consensus 175 A~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~ 253 (743)
T PRK10872 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRP 253 (743)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeec
Confidence 99999999999999999999999999999999999999999999876 4889999999999999999999996 99999
Q ss_pred cChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCCcee
Q 006186 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVP 531 (657)
Q Consensus 452 Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~~ 531 (657)
||+||||+||++|+.+|++|+|++|+||||+++.|||++||+||++|+|+|++|||||++||+||||||||+|.+|+|.+
T Consensus 254 K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~~~dCY~vLg~ih~~~~pip~~fkDYIa~PK~NGYqSLHttv~~~~g~~ 333 (743)
T PRK10872 254 KHIYSIWRKMQKKSLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKT 333 (743)
T ss_pred CCHHHHHHHHHHcCCCHHHhccceeEEEEECCHHHHHHHHHHHHhhccCCcchhhhcccCCCCCCcceeEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeehhhhHHHHhhhhhhcccccCCCC--CchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 006186 532 LEVQIRTKEMHLQAEFGFAAHWRYKEGDCQ--HSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADD 609 (657)
Q Consensus 532 vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~--~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~~d 609 (657)
+||||||..||.+||+|+||||+||++... .....+++++||++|+|||++..+ +.+|++.+|.+ +|+ |
T Consensus 334 vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d----~~ef~e~~k~d-l~~----d 404 (743)
T PRK10872 334 VEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMAD----SGEMLDEVRSQ-VFD----D 404 (743)
T ss_pred EEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHH-hcC----C
Confidence 999999999999999999999999987532 112345668999999999998655 67999999988 898 8
Q ss_pred CCcccCCCCCCCCCEEEEEEeCCcccceeccccceeceeeee
Q 006186 610 CPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYM 651 (657)
Q Consensus 610 c~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~~~~~~~~~~ 651 (657)
.+|+|||+ |. +-+||++..++||+|+
T Consensus 405 ~V~VfTPk----G~------------~~~Lp~gaT~lDfAy~ 430 (743)
T PRK10872 405 RVYVFTPK----GD------------VVDLPAGSTPLDFAYH 430 (743)
T ss_pred eEEEECCC----CC------------eEEcCCCCcHHHHHHH
Confidence 99999999 63 6689999999999995
No 3
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-111 Score=885.41 Aligned_cols=467 Identities=65% Similarity=1.001 Sum_probs=437.4
Q ss_pred CCccccccccccccccccccccCcCcchhhhhhhhhccccccCCCCcccccCCcccccCchhhhHHH-HHHhhhcccccc
Q 006186 130 SPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEG 208 (657)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~m~~~~~~~ 208 (657)
||||++.|+|+.. =||||||.|.|+||||+..+. +.+| +.|.|+ .+
T Consensus 6 ~~pm~i~r~r~~~-------------~~~~~~rKae~~~v~~E~~s~----------------l~~ea~~~~me----ve 52 (543)
T KOG1157|consen 6 SPPMRISRDRNLD-------------GFNGFVRKAEGSCVDYEMDSV----------------LVDEALGFKME----VE 52 (543)
T ss_pred CCCCCCccccchh-------------hhcccCccccccccccccccc----------------ccccccCCcee----ee
Confidence 9999999999862 299999999999999993333 3455 778884 34
Q ss_pred cHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccC-cchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccc
Q 006186 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287 (657)
Q Consensus 209 ~~~~~~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksG-ePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVED 287 (657)
...++.+++++.++..++.++.+++.+|+.+|+++|+||+|+++ +||+.||+.+|.||+++++|+++++||+|||||||
T Consensus 53 ~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 53 LVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD 132 (543)
T ss_pred ehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Confidence 56688999999999999999999999999999999999999965 59999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCH
Q 006186 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (657)
Q Consensus 288 T~vT~eeI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRtL~~lp~ 367 (657)
|.+++++|++.||.+||+||++||+++.+++..|.+. .+++.++ |++++++.||+||||||||||||+|..+||
T Consensus 133 t~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpP 206 (543)
T KOG1157|consen 133 TFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPP 206 (543)
T ss_pred ccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Confidence 9999999999999999999999999999998877553 3677777 678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCcceecc
Q 006186 368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVL 447 (657)
Q Consensus 368 ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI~~~~V 447 (657)
.+|+++++|++.||||||+++|++.++.+||+|||+||+|..|.++..+|+..+++.+|+.+++.|++.|+.+||.++-|
T Consensus 207 vgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i 286 (543)
T KOG1157|consen 207 VGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVI 286 (543)
T ss_pred chhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cccccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcC
Q 006186 448 CGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGE 527 (657)
Q Consensus 448 ~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~ 527 (657)
+||.|++||||+||.|++++.+||+|+.|+|+||.++.|||+++|+||++|+.+|++.||||+.||.||||||||+|+..
T Consensus 287 ~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~~~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh~~v~~d 366 (543)
T KOG1157|consen 287 KGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDNESDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLHTVVMVD 366 (543)
T ss_pred ecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcCchHHHHHHHHHHHHHHhCcchhhhhhcCccccccceeeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 006186 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 607 (657)
Q Consensus 528 ~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~ 607 (657)
+-+|+||||||.+||..||+|.|+||+||+|.. +++..++++|++++..|..+++.+|.+|+...+ |.||+|.
T Consensus 367 ~~~plevqirt~em~~~a~~g~aah~~yk~g~~--~~~~~q~~~~~~~~~~~~~~~~~kd~ss~~~~~-----~k~~s~~ 439 (543)
T KOG1157|consen 367 GTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKT--SSFVLQMVEWARWVVTWHAEIMSKDISSIKSSS-----CKFPSHQ 439 (543)
T ss_pred CcceeEEEEeeeccccccccchhhHhhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----cCCCCcc
Confidence 778999999999999999999999999999954 568889999999999999999998876655443 9999999
Q ss_pred CCCCcccCCCCCCCCCEEEEEEeCCcccceecccc
Q 006186 608 DDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQC 642 (657)
Q Consensus 608 ~dc~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~ 642 (657)
.||||.|.|+.+++||+|||++||++|+|||+|..
T Consensus 440 ~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~ 474 (543)
T KOG1157|consen 440 EDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEM 474 (543)
T ss_pred ccCceeecCCCCCCCceEEEEeeccccCCCCCchh
Confidence 99999999999999999999999999999999944
No 4
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=4.3e-109 Score=942.79 Aligned_cols=406 Identities=38% Similarity=0.594 Sum_probs=379.2
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 006186 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (657)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~e 293 (657)
+++|+.....+.+..+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e 83 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQ 83 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHH
Confidence 46777777888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 006186 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (657)
Q Consensus 294 eI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~r 372 (657)
+|++.||++|+.||+||||++.++.. ..+..|+|++||||++|+ |+||++|||||||||||+|..+|+++|++
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~~------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~ 157 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKFR------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR 157 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhcccccc------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH
Confidence 99999999999999999999887531 123458999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCcceeccccc
Q 006186 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (657)
Q Consensus 373 iA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR 450 (657)
+|+||++|||||||||||++||||||||||+||+|++|+.|++.|.++ .|+.+++.+++.|++.|++.||.++ |.||
T Consensus 158 iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R 236 (702)
T PRK11092 158 IARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGR 236 (702)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEec
Confidence 999999999999999999999999999999999999999999999876 4889999999999999999999996 9999
Q ss_pred ccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCCce
Q 006186 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 530 (657)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~ 530 (657)
.||+||||+||++|+.+|++|+|++|+||||++..|||++||+||++|+|+|++|||||+.||+||||||||+|.+|+|.
T Consensus 237 ~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqSLHt~v~g~~g~ 316 (702)
T PRK11092 237 EKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGV 316 (702)
T ss_pred cCCHHHHHHHHHHcCCChhHhccceeEEEEECCHHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCceEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 006186 531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDC 610 (657)
Q Consensus 531 ~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~~dc 610 (657)
++||||||.+||.+||+|+||||+||++.........+.+.||++|+|||++..+ +.+|++.+|.+ +|+ |.
T Consensus 317 ~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~----~~ef~~~~~~d-l~~----d~ 387 (702)
T PRK11092 317 PVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGS----SFEFIESVKSD-LFP----DE 387 (702)
T ss_pred EEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCC----hHHHHHHHHhh-hcc----ce
Confidence 9999999999999999999999999987532122233458999999999988655 67999999988 898 99
Q ss_pred CcccCCCCCCCCCEEEEEEeCCcccceeccccceeceeeee
Q 006186 611 PFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYM 651 (657)
Q Consensus 611 ~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~~~~~~~~~~ 651 (657)
+|+|||+ | -|-+||++..++||+|+
T Consensus 388 v~VfTP~----G------------~v~~LP~GaT~lDFAY~ 412 (702)
T PRK11092 388 IYVFTPE----G------------RIVELPAGATPVDFAYA 412 (702)
T ss_pred EEEECCC----C------------CEEeCCCCCchhhhhHh
Confidence 9999999 7 56789999999999996
No 5
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.7e-103 Score=897.46 Aligned_cols=383 Identities=42% Similarity=0.694 Sum_probs=359.9
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccc
Q 006186 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (657)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 315 (657)
|+.||.++|.||+|++|+||+.||++||.+|+++|+|.++++||||||++|||++|.++|++.||++|+.||++|||++.
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHH
Q 006186 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394 (657)
Q Consensus 316 l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK 394 (657)
+.... .+..|++++||||++|. |+||++|||||||||||+|..+|+++|+++|+||++||||||+||||++||
T Consensus 81 ~~~~~------~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKS------RQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccch------hhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 76421 23458999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCcceecccccccChHHHHHHHhhCCCCccccc
Q 006186 395 VQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIH 472 (657)
Q Consensus 395 ~ELEDLsFk~L~P~~Y~~i~~~L~~~--~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~ 472 (657)
||||||||+||+|++|+.|++.|.+. .|+.+++.++..|++.|.+.||.+. |+||+|++||||+||++|+.+|++|+
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k~~~~~~i~ 233 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRKGQNFDEIH 233 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhcCCCHHHcc
Confidence 99999999999999999999999886 4889999999999999999999985 99999999999999999999999999
Q ss_pred cceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCCceeEEEEEeehhhhHHHHhhhhhh
Q 006186 473 DIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAH 552 (657)
Q Consensus 473 Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~Aah 552 (657)
|++|+||||+++.|||+++|+||++|+|+|++|||||++||+||||||||+|.+|+|.++||||||.+||.|||+|+|||
T Consensus 234 Di~~~RIi~~~~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~g~~~EvQIRT~~mh~~Ae~Gvaah 313 (683)
T TIGR00691 234 DLLAIRIIVKSELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPKGLPVEIQIRTEDMDRVAEYGIAAH 313 (683)
T ss_pred cceeEEEEECCHHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCCCCEEEEEEEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCC
Q 006186 553 WRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIEND 632 (657)
Q Consensus 553 w~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~~s~~~~~~iK~~~lFP~h~~dc~y~ftp~~~~~g~~~~i~~~~~ 632 (657)
|+||++.... ....+.+.||++|++||++..+ +.+|++.+|.+ +|+ |.+|+|||+ |
T Consensus 314 w~yk~~~~~~-~~~~~~~~wl~~~~~~~~~~~~----~~~~~~~~k~~-l~~----~~i~vfTPk----G---------- 369 (683)
T TIGR00691 314 WIYKEGNPQK-EALIDDMRWLNYLVEWQQESAN----FFEFIENLKSD-LFN----EEIYVFTPK----G---------- 369 (683)
T ss_pred HhhcCCCCcc-hhHHHHHHHHHHHHHHHhhccc----chhHHHHhhHH-hcc----CceEEECCC----C----------
Confidence 9999875321 2245678999999999998765 67999999998 888 999999999 7
Q ss_pred cccceeccccceeceeeee
Q 006186 633 KVSFKYHFQCYVSMKWKYM 651 (657)
Q Consensus 633 ~~sv~El~~~~~~~~~~~~ 651 (657)
-+-+||++....||+|+
T Consensus 370 --~~~~lp~gst~~DfAy~ 386 (683)
T TIGR00691 370 --DVVELPSGSTPVDFAYA 386 (683)
T ss_pred --eEEEcCCCCCHHHHHHH
Confidence 45578999999999986
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=4.5e-40 Score=312.01 Aligned_cols=152 Identities=49% Similarity=0.727 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHHHHHHHhcHHHHHHHHHhhcccc
Q 006186 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (657)
Q Consensus 236 A~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA~LV~gVTKl~~ 315 (657)
|+.||.++|+||++++|+||+.||++||.+|+++|+|+++++||||||++||+..+ ++|++.||++|+++|.++|+++.
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999666 99999999999999999999998
Q ss_pred cchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChh
Q 006186 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391 (657)
Q Consensus 316 l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~ 391 (657)
+..... ......+.+++|+||+++. |+||++|||||||||||++...|+++++++|+||++||+|||||||||
T Consensus 80 ~~~~~~---~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPW---EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc---hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 875411 1234568999999999995 899999999999999999999999999999999999999999999998
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.96 E-value=1.7e-29 Score=232.62 Aligned_cols=119 Identities=45% Similarity=0.720 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhcCc---ceecccccccChHHHHHHHhhCCCCc---cccccceEEEEEECChHHHHHHHHHHHhhcCCC
Q 006186 428 SAIEKLEQALKDKNI---SFLVLCGRHKSLYSIHCKMLKKKLTM---DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (657)
Q Consensus 428 ~v~~~L~~~L~~~gI---~~~~V~gR~Ks~ySI~~Km~rk~~~~---~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pi 501 (657)
.+...|++.|++.++ .. .|++|+|+++|+++||.+++... ++|+|++|+||||++.+|||.++++|++.|+++
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~-~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~~~d~~~v~~~l~~~f~~~ 80 (129)
T cd05399 2 AALEEIADLLRDAGIIGRVA-SVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLFVDDCYRVLDLLHSLFKVI 80 (129)
T ss_pred hHHHHHHHHHHHcCCCCCCc-EEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeCHHHHHHHHHHHHhCCccc
Confidence 456778888988888 55 59999999999999999998877 999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCccceeEEEEcCC---ceeEEEEEeehhhhHHHHh
Q 006186 502 PGKMKDYITRPKFNGYQSLHTVVTGEG---LVPLEVQIRTKEMHLQAEF 547 (657)
Q Consensus 502 p~r~kDYIa~PK~NGYqSLHt~V~~~~---g~~vEIQIRT~~Mh~wAE~ 547 (657)
|++++|||+.||.|||||+|++|..++ |.++||||||.+||+|||.
T Consensus 81 ~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 81 PGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred CccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999876 7999999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.96 E-value=4.6e-30 Score=231.22 Aligned_cols=108 Identities=40% Similarity=0.589 Sum_probs=95.4
Q ss_pred ccccChHHHHHHHhhCCC---CccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEE-
Q 006186 449 GRHKSLYSIHCKMLKKKL---TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVV- 524 (657)
Q Consensus 449 gR~Ks~ySI~~Km~rk~~---~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V- 524 (657)
+|+|+++|+++|+.|++. .+++|+|++|+||||.+.+|||.++++|+++|.+.+.+++|||+.||.|||||+|++|
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~GYrs~H~~v~ 80 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFPDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNGYRSLHYIVP 80 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSCCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS--EEEEEEE
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeHHHHHHHHHHHHHcCCcccccccccccccccCCcEeeEeeee
Confidence 699999999999999875 6899999999999999999999999999999999999999999999999999999999
Q ss_pred --EcCCceeEEEEEeehhhhHHHHhhhhhhcccccC
Q 006186 525 --TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (657)
Q Consensus 525 --~~~~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~ 558 (657)
..+.+.++||||||.+||.|||+. |||.||..
T Consensus 81 ~~~~~~~~~~EiQIrT~~~~~waei~--h~~~YK~~ 114 (115)
T PF04607_consen 81 ENESFKGYPFEIQIRTLLQHAWAEIE--HDLRYKSS 114 (115)
T ss_dssp ETTECEEEEEEEEEEEHHHHHHHHHH--HHHHHHCT
T ss_pred ecccCCCceeeeeeccHHHHHHHHHH--HHHhCCCC
Confidence 346789999999999999999965 78999964
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.94 E-value=2.9e-27 Score=237.60 Aligned_cols=141 Identities=30% Similarity=0.345 Sum_probs=115.1
Q ss_pred eecccccccChHHHHHHHhhCCCCc------cccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCc
Q 006186 444 FLVLCGRHKSLYSIHCKMLKKKLTM------DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGY 517 (657)
Q Consensus 444 ~~~V~gR~Ks~ySI~~Km~rk~~~~------~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGY 517 (657)
++.|++|+|++.||..|++|||.++ ++|+||+|+||+|.+.+|.|.+.++|.+.........||||.+||+|||
T Consensus 52 ie~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~F~~DI~~v~~~l~~~~d~~iv~~kDyi~n~k~~GY 131 (231)
T COG2357 52 IEHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQFVDDIYRVVDLLKSRKDFTIVEEKDYIRNPKPNGY 131 (231)
T ss_pred hHHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeeehHhhHHHHHHHHhcccCccchhHHHHHhCCCCCCC
Confidence 4469999999999999999999543 7999999999999999999999999999887777789999999999999
Q ss_pred cceeEEEEcC-------CceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccC
Q 006186 518 QSLHTVVTGE-------GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKD 587 (657)
Q Consensus 518 qSLHt~V~~~-------~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~ 587 (657)
||+|++|.-| .+..+||||||.+||.||+++| ..+||-+... +..+...+.-++..+.-.++.|...
T Consensus 132 RS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH--~l~YKy~~~~-Pe~i~~el~~~a~~~~~lDe~m~~I 205 (231)
T COG2357 132 RSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEH--KLRYKYGGEV-PEEIKAELKRAAEAAAGLDEEMSEI 205 (231)
T ss_pred ceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHH--HhhccccccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999854 3478999999999999999996 4666665433 3344445555555444455555443
No 10
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.20 E-value=3.2e-06 Score=83.77 Aligned_cols=72 Identities=26% Similarity=0.409 Sum_probs=57.6
Q ss_pred hcCCccccCc--chhHHHHHHHHHHHHhCCCHHHHHHHHhhcc---cccccC--------------CHHHHHHHhcHHHH
Q 006186 244 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAFL--------------SYDYIFRTFGAGVA 304 (657)
Q Consensus 244 H~GQ~RksGe--PYI~Hpl~VA~ILaelg~D~~tIaAALLHDv---VEDT~v--------------T~eeI~~~FG~eVA 304 (657)
+.|+...+|+ +++.|++.+|.+....|.|.+.|+||||||+ ++|+.. ..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3444455665 6999999999988899999999999999998 776532 25678889999999
Q ss_pred HHHHHhhcccc
Q 006186 305 DLVEGVSKLSQ 315 (657)
Q Consensus 305 ~LV~gVTKl~~ 315 (657)
.+|..-..-+.
T Consensus 93 ~lV~~Hv~aKr 103 (179)
T TIGR03276 93 EPIRLHVQAKR 103 (179)
T ss_pred HHHHHHHHHHH
Confidence 99998765433
No 11
>PRK14707 hypothetical protein; Provisional
Probab=95.27 E-value=0.085 Score=67.52 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=80.8
Q ss_pred cccccccChHHHHHHHhh----CCCCc----cccccceEEEEEECC---hHHHHHHHHHHHhh-cCCCCCcccccccCCC
Q 006186 446 VLCGRHKSLYSIHCKMLK----KKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPK 513 (657)
Q Consensus 446 ~V~gR~Ks~ySI~~Km~r----k~~~~----~eI~Dl~GiRIIv~~---~~DCY~vlgiIh~l-~~pip~r~kDYIa~PK 513 (657)
....|.|+..||.+|+.. ++.++ ..|.|.+..=||++. ...+..+++.+... |..+ +++++-. .+
T Consensus 2306 GLe~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~~Fva~~r~Il~aL~~qGy~~v--kvkN~F~-~~ 2382 (2710)
T PRK14707 2306 GTQHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQGFTAGLRAVLAALDDQGHARV--KLTNQFT-EY 2382 (2710)
T ss_pred chHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeeccc-CC
Confidence 378899999999999963 45554 688999888899885 45677777666554 4432 3555443 23
Q ss_pred CCCccceeEEEEcCCceeEEEEEeehhhhHHHHhhhhhhcccccC
Q 006186 514 FNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (657)
Q Consensus 514 ~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~ 558 (657)
.++|+.+++++..++|..+|||.-|..--..-+. .|=.||+.
T Consensus 2383 ~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2383 SPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred CCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 5789999999999999999999999887666653 56778864
No 12
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=94.49 E-value=0.049 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHhCC------CH-HHHHHHHhhcccccc
Q 006186 256 LLHCVETAMLLAAIGA------NS-TVVAAGLLHDTLDDA 288 (657)
Q Consensus 256 I~Hpl~VA~ILaelg~------D~-~tIaAALLHDvVEDT 288 (657)
+.|.+.|+.+...+.. +. ..++||||||+-.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6899999987765432 22 367999999997654
No 13
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=94.22 E-value=0.11 Score=44.75 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHHHhC------CCHHHHHHHHhhccccccc
Q 006186 252 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDAF 289 (657)
Q Consensus 252 GePYI~Hpl~VA~ILaelg------~D~~tIaAALLHDvVEDT~ 289 (657)
+++.+.|.+.|+.+...+. .......||||||+-+...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 5678899999998876553 3456889999999977643
No 14
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=93.01 E-value=0.77 Score=47.54 Aligned_cols=127 Identities=14% Similarity=0.066 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH--------hCCCHH-HHHHHHhhcccccc-cCCHHHH
Q 006186 226 KIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA--------IGANST-VVAAGLLHDTLDDA-FLSYDYI 295 (657)
Q Consensus 226 ~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILae--------lg~D~~-tIaAALLHDvVEDT-~vT~eeI 295 (657)
++.|..++++|.+++.+.+.. .-+.|.++|...... ++.|.+ ..+||||||+..-. ......+
T Consensus 34 ~iPdt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~ 106 (228)
T TIGR03401 34 PLPDTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKM 106 (228)
T ss_pred CCCChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccC
Confidence 345778888999998876442 447899999854322 366765 45889999987522 1111122
Q ss_pred H-HHhcHHHH-HHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhc------c--Cceeehhhhhhhhhhcc-cccC
Q 006186 296 F-RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM------A--DARAVLIKLADRLHNMM-TLDA 364 (657)
Q Consensus 296 ~-~~FG~eVA-~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAm------a--D~RavLIKLADRLhNMR-tL~~ 364 (657)
. +..|...| +++...+ ..+ ..+++.+...+... . ++.+.||..||++++|- ....
T Consensus 107 ~fe~~ga~~A~~~L~~~~---G~~-----------~~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~ 172 (228)
T TIGR03401 107 SFEFYGGILALDVLKEQT---GAN-----------QDQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDL 172 (228)
T ss_pred CHHHHHHHHHHHHHHHCC---CCC-----------HHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhh
Confidence 1 22333333 3333321 111 11222222222111 1 44688999999999986 3445
Q ss_pred CCHHHHHHH
Q 006186 365 LPLCKRQRF 373 (657)
Q Consensus 365 lp~ekq~ri 373 (657)
++++.+..+
T Consensus 173 ~~~~~~~~v 181 (228)
T TIGR03401 173 VHPDTVDAV 181 (228)
T ss_pred CCHHHHHHH
Confidence 666655443
No 15
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=92.45 E-value=0.29 Score=42.78 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHhCC--------CHHHHHHHHhhcccccc
Q 006186 254 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 288 (657)
Q Consensus 254 PYI~Hpl~VA~ILaelg~--------D~~tIaAALLHDvVEDT 288 (657)
+.+.|.+.|+.+...+.. ...+..||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999987765422 35678999999998864
No 16
>PRK09169 hypothetical protein; Validated
Probab=90.46 E-value=0.91 Score=59.32 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCcceecccccccChHHHHHHHh----hCCCCc----cccccceEEEEEECC---hHHHHHHHHHHHhh-c
Q 006186 431 EKLEQALKDKNISFLVLCGRHKSLYSIHCKML----KKKLTM----DEIHDIYGLRLIVEN---EEDCYQALRVVHQL-W 498 (657)
Q Consensus 431 ~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~----rk~~~~----~eI~Dl~GiRIIv~~---~~DCY~vlgiIh~l-~ 498 (657)
..|+..+...|........|+|+..|+.+|+. +++.++ ..|.|.+-.=|+.+. ...+..+++.+... |
T Consensus 1900 ~~L~s~a~~~g~~L~Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~~Fva~~r~iv~~L~~~G~ 1979 (2316)
T PRK09169 1900 PMLRAAIEGIGGQLRGLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQTFVAGYRRILGALDEQGH 1979 (2316)
T ss_pred HHHHHHHHHhcCCccchHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCccHHHHHHHHHHHHHhCCC
Confidence 33444444434322347889999999999998 456664 678998877777774 45677777776654 4
Q ss_pred CCCCCcccccccCCCCCCccceeEEE-EcCCceeEEEEEeehhhhHHHHhhhhhhcccccC
Q 006186 499 AEVPGKMKDYITRPKFNGYQSLHTVV-TGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 558 (657)
Q Consensus 499 ~pip~r~kDYIa~PK~NGYqSLHt~V-~~~~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~ 558 (657)
..+ +++++-.. ..+.|+.+|+++ ..++|..+|||.-|..--..-+. .|=.||..
T Consensus 1980 ~~V--kv~N~F~~-~~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1980 TRT--RVTNHFKK-RGPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred eEE--EEEeeecc-CCCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 433 23332221 248999999999 67789999999999877666653 57789864
No 17
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=90.29 E-value=2.4 Score=46.57 Aligned_cols=148 Identities=18% Similarity=0.123 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccccccC--C----HHHHHHH--
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDDAFL--S----YDYIFRT-- 298 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVEDT~v--T----~eeI~~~-- 298 (657)
..++|+.+-.+.+. .+..+.|.+.|+.+.. .++.|.+ +++||||||+-..... . -.++.+.
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 45556666443322 2335799999997643 4566765 4567999999654321 1 1233333
Q ss_pred hcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHH
Q 006186 299 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL 378 (657)
Q Consensus 299 FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETl 378 (657)
|.++++++|+.-..- .++.. ......+..-........+.+|-.||+|..+.. .++.+.+.+..++.
T Consensus 245 ~~e~i~~iIe~H~g~-G~~~~---------~~~~~gL~~~~~~P~TLEakIV~dADrL~~~~r--~v~~e~~~~k~~~~- 311 (339)
T PRK12703 245 IDDRVVSIVERHIGA-GITSE---------EAQKLGLPVKDYVPETIEEMIVAHADNLFAGDK--RLNLKQVMDKYRKK- 311 (339)
T ss_pred CCHHHHHHHHHHhcc-CCCcc---------hhhccCCccccCCCCCHHHHHHHHHHHHhcCCC--cCCHHHHHHHHHhh-
Confidence 456777777654421 11100 000000000000001345679999999977764 24444433322221
Q ss_pred HHHHhhhhccChhhHHHHHHhhh
Q 006186 379 EIFVPLANRLGISTWKVQLENLC 401 (657)
Q Consensus 379 eIYAPLA~RLGi~~lK~ELEDLs 401 (657)
-++..++| +..|..|||.++
T Consensus 312 -~~~~~~~R--~~~l~~~~~~~~ 331 (339)
T PRK12703 312 -GLHDAAER--IKKLHEELSSIC 331 (339)
T ss_pred -hhhHHHHH--HHHHHHHHHHHh
Confidence 12334444 455666666544
No 18
>PRK14707 hypothetical protein; Provisional
Probab=86.26 E-value=2.6 Score=54.95 Aligned_cols=194 Identities=20% Similarity=0.240 Sum_probs=116.2
Q ss_pred hhhhc----cc--ccCCCHHHHHHHHHHHHHHHHhhhhccChhhH-HHHHH--hhhhhccCCchhh----------HHHH
Q 006186 355 RLHNM----MT--LDALPLCKRQRFAKETLEIFVPLANRLGISTW-KVQLE--NLCFKHLNPDQHT----------ELSS 415 (657)
Q Consensus 355 RLhNM----Rt--L~~lp~ekq~riA~ETleIYAPLA~RLGi~~l-K~ELE--DLsFk~L~P~~Y~----------~i~~ 415 (657)
++|++ +. +...++++|+.+-.+..+.|....-=-|...| -|+=| ...+. ..|..-. .. .
T Consensus 2416 r~HdLYKQ~q~L~lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 2493 (2710)
T PRK14707 2416 RFHDLYKRTHALALGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALAG-TPPALASEQTPVNAGASPA-H 2493 (2710)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCcC-CCCccccccccccccccHH-H
Confidence 56666 22 45678888888888888999887665565543 22322 22221 1222111 11 1
Q ss_pred HHHhh-h-hhh----hHHHHHHHHHHHHHhcCcceecccccc---------cChHHHHHHHhh---CCCC----cccccc
Q 006186 416 KLVEC-F-DEA----MVTSAIEKLEQALKDKNISFLVLCGRH---------KSLYSIHCKMLK---KKLT----MDEIHD 473 (657)
Q Consensus 416 ~L~~~-~-re~----~i~~v~~~L~~~L~~~gI~~~~V~gR~---------Ks~ySI~~Km~r---k~~~----~~eI~D 473 (657)
.|... . -+. +++.+.+.+...|..++. +..-+||. |+..||.+|+.+ .+++ +..|.|
T Consensus 2494 r~~~~a~~~~~~v~p~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVrD 2572 (2710)
T PRK14707 2494 RVFNAATGKQASLTPVLNTLADGLGARLWGNVR-YKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVGD 2572 (2710)
T ss_pred HHHHHhhhcccccChHHHHHHHHhhhhhcccCc-cccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhhh
Confidence 22211 0 111 223333333333333222 21235565 999999999985 3444 467899
Q ss_pred ceEEEEEECC---hHHHHHHHHHHHhh-cCCCCCcccccccCCCCCCccceeEEEEcCCceeEEEEEeehhhhHHHHhhh
Q 006186 474 IYGLRLIVEN---EEDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGF 549 (657)
Q Consensus 474 l~GiRIIv~~---~~DCY~vlgiIh~l-~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~~vEIQIRT~~Mh~wAE~G~ 549 (657)
.+..-||.+. ......+.+.+... |+.+ ++|++-..| .+.|..+-+++..++|..||||.-|..--..-+ +
T Consensus 2573 alRYtviLp~e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~GvN~~~r~~~g~~FEIQFHT~~Sf~~K~-~- 2647 (2710)
T PRK14707 2573 ALRYALELPSEGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGINASFTDAEGYAFEVQFHTAESFNAKA-Q- 2647 (2710)
T ss_pred heeEEEEcCcchHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccceeeeEEcCCCCeEEEEeccHHHHHHHH-H-
Confidence 8888888885 45666666666553 5543 577766543 467999999999888889999999977654444 3
Q ss_pred hhhccccc
Q 006186 550 AAHWRYKE 557 (657)
Q Consensus 550 Aahw~YK~ 557 (657)
.|=.|+.
T Consensus 2648 -tH~lYek 2654 (2710)
T PRK14707 2648 -THLSYKR 2654 (2710)
T ss_pred -hHHHHHh
Confidence 4677864
No 19
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=81.84 E-value=7 Score=38.19 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=34.7
Q ss_pred CcchhHHHHHHHHHH---H-HhC-----CCH-HHHHHHHhhccccccc--CCH----HHHHHH--hcHHHHHHHHH
Q 006186 252 GDPYLLHCVETAMLL---A-AIG-----ANS-TVVAAGLLHDTLDDAF--LSY----DYIFRT--FGAGVADLVEG 309 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-elg-----~D~-~tIaAALLHDvVEDT~--vT~----eeI~~~--FG~eVA~LV~g 309 (657)
....+.|.+.|+.+. + .++ .|. ...+||||||+-.... ... .++.+. |.++++.+|..
T Consensus 11 ~~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 11 DESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345678999998753 2 344 443 5678999999876422 111 123333 34667777753
No 20
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=79.61 E-value=3.1 Score=42.94 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=30.7
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHHH-HHHHHhhcccccccC
Q 006186 251 SGDPYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLDDAFL 290 (657)
Q Consensus 251 sGePYI~Hpl~VA~ILa----elg~D~~t-IaAALLHDvVEDT~v 290 (657)
.|..-+.|.++||.+.. +.|.|.++ ..||||||+......
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 67778999999997543 56888764 578899999876543
No 21
>PRK10119 putative hydrolase; Provisional
Probab=79.55 E-value=7 Score=40.73 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVE 286 (657)
.+.++..+..+...+. .+|-- +.|..+|..... ..+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3445556665544442 22322 567777765433 3366654 668999999975
No 22
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=71.45 E-value=6.2 Score=39.40 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=28.9
Q ss_pred ccCcch--hHHHHHHHHHHHHhCCCHHHHHHHHhhcc
Q 006186 250 ASGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 284 (657)
Q Consensus 250 ksGePY--I~Hpl~VA~ILaelg~D~~tIaAALLHDv 284 (657)
.+|+|- ..|.+..|.+.-.-|.+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 367774 57999988766667999999999999986
No 23
>PRK03826 5'-nucleotidase; Provisional
Probab=65.72 E-value=14 Score=37.46 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHH---HHh-------CCCH-HHHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLL---AAI-------GANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~IL---ael-------g~D~-~tIaAALLHDvVED 287 (657)
+.--.|-+.||.+. +.+ +.|. .++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45678999999763 322 2454 46778999999985
No 24
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=62.67 E-value=12 Score=30.46 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVED 287 (657)
.+-+.|.+.|+.... .+++|.+ ...||||||+-.-
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~~ 42 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGKP 42 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCCc
Confidence 345678888887654 3466664 6789999997543
No 25
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=57.38 E-value=39 Score=34.28 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=52.3
Q ss_pred cCcchhHHHHHHHHHH---H----HhC--CC-HHHHHHHHhhcccccc--cCC--HHHHHHHhcHHHHHHHHHhhccccc
Q 006186 251 SGDPYLLHCVETAMLL---A----AIG--AN-STVVAAGLLHDTLDDA--FLS--YDYIFRTFGAGVADLVEGVSKLSQL 316 (657)
Q Consensus 251 sGePYI~Hpl~VA~IL---a----elg--~D-~~tIaAALLHDvVEDT--~vT--~eeI~~~FG~eVA~LV~gVTKl~~l 316 (657)
.++.-..|-+.||.+- + ..| .+ ...+..||+||.-|-- +++ ............-+..+.+.+..-
T Consensus 30 ~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~- 108 (193)
T COG1896 30 NPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLF- 108 (193)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHccc-
Confidence 5677788888887642 2 223 34 3478889999999962 332 112222233333333333322211
Q ss_pred chhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhc
Q 006186 317 SKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359 (657)
Q Consensus 317 ~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNM 359 (657)
+ ....-.+-+|.. +...+..+.+||.||+|..+
T Consensus 109 ~---------~p~e~~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 109 G---------LPEELLELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred C---------CcHHHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 0 000111223322 22347889999999999998
No 26
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=56.33 E-value=31 Score=33.85 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=50.0
Q ss_pred CcchhHHHHHHHHHH---H-HhC--CCH-HHHHHHHhhccccc--ccCCHHH--HHHHhcHHHHHHHHHhhcccccchhH
Q 006186 252 GDPYLLHCVETAMLL---A-AIG--ANS-TVVAAGLLHDTLDD--AFLSYDY--IFRTFGAGVADLVEGVSKLSQLSKLA 320 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-elg--~D~-~tIaAALLHDvVED--T~vT~ee--I~~~FG~eVA~LV~gVTKl~~l~~l~ 320 (657)
.+.--.|...||.+. + ..+ .|. .++..+|+||+.|- ++++.-. ....+-..-...++.+..+ ++.
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~-- 95 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE-- 95 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC--
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh--
Confidence 355678999998763 3 234 665 57888899999996 2333321 1111222222233332221 110
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCceeehhhhhhhhhhcc
Q 006186 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (657)
Q Consensus 321 r~~~~~~k~~qaE~lRkmLLAm---aD~RavLIKLADRLhNMR 360 (657)
...+.++.++.-+ ..+.+.++|-+|+|.-+-
T Consensus 96 ---------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 ---------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp ---------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 1123444444322 378899999999998774
No 27
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=52.94 E-value=13 Score=38.51 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=49.3
Q ss_pred cchhHHHHHHHHHHHH-------hC--CCH-HHHHHHHhhcccccccCCHHHHH---HHhcHHHHHHHHHhhcccccchh
Q 006186 253 DPYLLHCVETAMLLAA-------IG--ANS-TVVAAGLLHDTLDDAFLSYDYIF---RTFGAGVADLVEGVSKLSQLSKL 319 (657)
Q Consensus 253 ePYI~Hpl~VA~ILae-------lg--~D~-~tIaAALLHDvVEDT~vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~l 319 (657)
+.--.|.+.||.+..- .| .|+ .+...||.||..|-- | .||. +.+.++...++..|.+.-.-..+
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~F--t-GDI~TPVKy~tPelr~~~~~VE~~m~~~~i 104 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIF--T-GDIKTPVKYATPELREMLAQVEEEMTENFI 104 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGT--S-----S-SSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHH--c-CCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 3455799998876432 23 354 345789999999963 1 1111 12333444444443331110000
Q ss_pred HhhccccchHHHHHHHHHHHhhccC--ceeehhhhhhhhhhcc
Q 006186 320 ARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNMM 360 (657)
Q Consensus 320 ~r~~~~~~k~~qaE~lRkmLLAmaD--~RavLIKLADRLhNMR 360 (657)
. +. ......+.+|.++.--.| +...+||.||+++-+-
T Consensus 105 ~--~~--iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 105 K--KE--IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp H--HH--S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred H--hh--CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 0 00 001123456666554433 7889999999998774
No 28
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=52.94 E-value=8 Score=43.66 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHh----CC--CH--------HHHHHHHhhccc
Q 006186 256 LLHCVETAMLLAAI----GA--NS--------TVVAAGLLHDTL 285 (657)
Q Consensus 256 I~Hpl~VA~ILael----g~--D~--------~tIaAALLHDvV 285 (657)
+.|.+.|..+...+ +. +. .+.+||||||+=
T Consensus 53 FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDIG 96 (421)
T COG1078 53 FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDIG 96 (421)
T ss_pred cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHccC
Confidence 89999998876533 21 11 488999999973
No 29
>PRK00106 hypothetical protein; Provisional
Probab=48.78 E-value=19 Score=42.00 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.7
Q ss_pred cCcchhHHHHHHHHHH----HHhCCC-HHHHHHHHhhccccc
Q 006186 251 SGDPYLLHCVETAMLL----AAIGAN-STVVAAGLLHDTLDD 287 (657)
Q Consensus 251 sGePYI~Hpl~VA~IL----aelg~D-~~tIaAALLHDvVED 287 (657)
.|...+.|.++||.+. ..+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 4667789999999764 367888 456789999998665
No 30
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=48.71 E-value=19 Score=34.63 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHH---H-HhCCCH-HHHHHHHhhcccc
Q 006186 253 DPYLLHCVETAMLL---A-AIGANS-TVVAAGLLHDTLD 286 (657)
Q Consensus 253 ePYI~Hpl~VA~IL---a-elg~D~-~tIaAALLHDvVE 286 (657)
+.-+.|.+.||.+. + .++.|+ ..-.||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 34578999998754 3 346654 5678999999876
No 31
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=47.35 E-value=21 Score=36.31 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHH----hCCCH-HHHHHHHhhccccccc
Q 006186 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 289 (657)
Q Consensus 253 ePYI~Hpl~VA~ILae----lg~D~-~tIaAALLHDvVEDT~ 289 (657)
++-+.|+++||....+ +++|. ..-+||+|||.-.+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3458999999986543 46776 4678999999977644
No 32
>PRK14137 recX recombination regulator RecX; Provisional
Probab=47.09 E-value=22 Score=36.10 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=61.5
Q ss_pred HHHHHHhhhhhccCCchh--hHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCcc-----ee-cccccccChHHHHHHHhh
Q 006186 393 WKVQLENLCFKHLNPDQH--TELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS-----FL-VLCGRHKSLYSIHCKMLK 463 (657)
Q Consensus 393 lK~ELEDLsFk~L~P~~Y--~~i~~~L~~~~-re~~i~~v~~~L~~~L~~~gI~-----~~-~V~gR~Ks~ySI~~Km~r 463 (657)
....+.+.|+++|--..| .+|.++|.+.. .++.|+.+++.|.+ .|.- ++ ....+-+.+.-|..+|.+
T Consensus 38 ~~~~~~~~Al~~Ls~R~rS~~ELr~KL~~kg~~~e~Ie~vI~rL~e----~gyLDD~rfAe~~~~~k~~Gp~rI~~eL~q 113 (195)
T PRK14137 38 AREALLAYAFRALAARAMTAAELRAKLERRSEDEALVTEVLERVQE----LGYQDDAQVARAENSRRGVGALRVRQTLRR 113 (195)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 444555666666655554 56777776653 45556666665543 3321 00 022244678889999999
Q ss_pred CCCCccccccceEEEEEECChHHHHHHHHHHHhhcCC
Q 006186 464 KKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAE 500 (657)
Q Consensus 464 k~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~p 500 (657)
||++-+-|.+.+.- +...++...+..++.+.|..
T Consensus 114 KGI~~~lI~~al~~---~d~ede~e~a~~l~~KK~~~ 147 (195)
T PRK14137 114 RGVEETLIEETLAA---RDPQEEQQEARNLLERRWSS 147 (195)
T ss_pred cCCCHHHHHHHHHh---cCchhHHHHHHHHHHHhccc
Confidence 99987666665541 13345667778888887764
No 33
>PRK12704 phosphodiesterase; Provisional
Probab=46.72 E-value=54 Score=38.13 Aligned_cols=36 Identities=39% Similarity=0.530 Sum_probs=26.5
Q ss_pred CcchhHHHHHHHHHH---H-HhCCCHH-HHHHHHhhccccc
Q 006186 252 GDPYLLHCVETAMLL---A-AIGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-elg~D~~-tIaAALLHDvVED 287 (657)
|...+.|.++||.+. + .+|+|.+ ...||||||+=.-
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~ 373 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKA 373 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcC
Confidence 445788999999753 3 5688754 5689999997553
No 34
>PRK14136 recX recombination regulator RecX; Provisional
Probab=46.34 E-value=18 Score=39.37 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=32.5
Q ss_pred cChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCC
Q 006186 452 KSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (657)
Q Consensus 452 Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pi 501 (657)
|.+.-|..+|++||++-+-|.+.+. .+ .+++...+..++.+.|+..
T Consensus 226 kGp~rIrqELrQKGId~eLIEqALe--ei--eEDE~E~A~~L~eKK~~~~ 271 (309)
T PRK14136 226 VGSARIVSELKRHAVGDALVESVGA--QL--RETEFERAQAVWRKKFGAL 271 (309)
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHH--hc--cHhHHHHHHHHHHHHhccc
Confidence 5678899999999998766666554 11 3456667777787777543
No 35
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.29 E-value=29 Score=33.13 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=54.1
Q ss_pred HhhhhhccCCchhhHHHHHHHhh--------hhhhhHHHHHHHHHHHHHhcCcceeccc----ccccChHH----HHHHH
Q 006186 398 ENLCFKHLNPDQHTELSSKLVEC--------FDEAMVTSAIEKLEQALKDKNISFLVLC----GRHKSLYS----IHCKM 461 (657)
Q Consensus 398 EDLsFk~L~P~~Y~~i~~~L~~~--------~re~~i~~v~~~L~~~L~~~gI~~~~V~----gR~Ks~yS----I~~Km 461 (657)
||.|==|++-..-+++.-+|.+. +...+...+...+-.+|++.||..--|. ||++.... +.++|
T Consensus 26 E~~~eiyinlr~tr~v~vallens~~vK~Ig~P~s~y~k~skkvlkaleq~gI~vIPvk~KgrGrprkyd~~t~~~i~em 105 (139)
T COG1710 26 EDVTEIYINLRPTREVIVALLENSPNVKVIGCPPSLYPKVSKKVLKALEQMGIKVIPVKLKGRGRPRKYDRNTLLRIREM 105 (139)
T ss_pred cccceEEEeecccHHHHHHHHhcCCCcceecCCchhhhHHHHHHHHHHHhCCceEeeeeecCCCCCcccchhHHHHHHHH
Confidence 34443344444444555555442 1233445666666668888898754455 78888777 89999
Q ss_pred hhCCCCccccccceEEEE
Q 006186 462 LKKKLTMDEIHDIYGLRL 479 (657)
Q Consensus 462 ~rk~~~~~eI~Dl~GiRI 479 (657)
.++|.+..+|.-..|+=|
T Consensus 106 lr~gk~preIsk~lGIpi 123 (139)
T COG1710 106 LRNGKTPREISKDLGIPI 123 (139)
T ss_pred HHcCCCHHHHHHhhCCch
Confidence 999999999988888754
No 36
>PRK12705 hypothetical protein; Provisional
Probab=43.22 E-value=89 Score=36.43 Aligned_cols=37 Identities=38% Similarity=0.501 Sum_probs=28.1
Q ss_pred cCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 006186 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 251 sGePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVED 287 (657)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 35567899999997643 6688764 5689999999764
No 37
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=42.31 E-value=41 Score=35.64 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tI-aAALLHDv 284 (657)
.|.+|+++-...-..--.....|-|.|++++|+....-.-+++-+ .+||+||.
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 366666665444332222356789999999999998765555544 79999996
No 38
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=41.52 E-value=2.4e+02 Score=34.14 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=114.5
Q ss_pred CcchhHHHHHHHHHHHHhC---CCHHHHHHHHhhccccccc---CCHHHHH---HHhcHHHHHHHHHhhcccccchhHhh
Q 006186 252 GDPYLLHCVETAMLLAAIG---ANSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARE 322 (657)
Q Consensus 252 GePYI~Hpl~VA~ILaelg---~D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~l~r~ 322 (657)
|.|.+.=+-+-...+...| .|+.++++-=|..++.... ++.+|++ +...++--++|+.+.+.-.+..
T Consensus 440 gl~a~WI~~~~~~~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~---- 515 (675)
T PRK12720 440 MGQICWLTKDQAEQAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGK---- 515 (675)
T ss_pred CCceEeeCHHHHHHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH----
Confidence 4443332333334444455 3788888887777776432 4444433 3455666667777633222221
Q ss_pred ccccchHHHHHHHHHHH---hhccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHh
Q 006186 323 NNTASKTVEADRLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLEN 399 (657)
Q Consensus 323 ~~~~~k~~qaE~lRkmL---LAmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELED 399 (657)
-.+-+|.+| +.+.|.+.++=-|||.-..-++...+.+.-|+++++.--.-|+.-.+.|-...+.-++|+
T Consensus 516 --------i~~VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~ 587 (675)
T PRK12720 516 --------IAEILQRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIEN 587 (675)
T ss_pred --------HHHHHHHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHH
Confidence 123455544 234588888888888877666666777778888888777777765566778888888887
Q ss_pred hhhhccCCchhhHHHHHHHhh-------hhhhhHHHHHHHHHHHHHhcCcceecccccccChHHHHHHHhhCCC------
Q 006186 400 LCFKHLNPDQHTELSSKLVEC-------FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL------ 466 (657)
Q Consensus 400 LsFk~L~P~~Y~~i~~~L~~~-------~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------ 466 (657)
.-- +.+++. -..+..+++++.+++.+++..-.+- ++.-. +-...+||.++..
T Consensus 588 ~l~------------~~i~~~~~g~~~~l~P~~~~~l~~~~~~~~~~~~~pVl-lts~~--iR~~lr~li~~~~p~l~VL 652 (675)
T PRK12720 588 LIR------------ESIRQTSAGTYSALSSRHSTQILQLIEQALKQSQKLVL-VTSVD--VRRFLRKIIERTLFDLPVL 652 (675)
T ss_pred HHH------------HHHhcccCCCccccCHHHHHHHHHHHHHHHHccCCcEE-EeCHH--HHHHHHHHHHHhCCCCEEe
Confidence 543 333321 0223456666667776665421221 22211 2234455555433
Q ss_pred CccccccceEEEEE
Q 006186 467 TMDEIHDIYGLRLI 480 (657)
Q Consensus 467 ~~~eI~Dl~GiRII 480 (657)
++.||.+-.-++++
T Consensus 653 S~~Ei~~~~~i~~~ 666 (675)
T PRK12720 653 SWQELGDEAEIKVV 666 (675)
T ss_pred CHhHcCCCCeEEEE
Confidence 46777776666654
No 39
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=39.39 E-value=31 Score=38.00 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHH----HhCCCHHH-HHHHHhhcccc
Q 006186 254 PYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLD 286 (657)
Q Consensus 254 PYI~Hpl~VA~ILa----elg~D~~t-IaAALLHDvVE 286 (657)
.=++|.++|+.+-. .++.+.+. -+|||+||+=-
T Consensus 62 tR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiGh 99 (336)
T PRK01286 62 TRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLGH 99 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 34899999998654 45666544 47899999854
No 40
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.05 E-value=1e+02 Score=35.93 Aligned_cols=35 Identities=40% Similarity=0.560 Sum_probs=26.1
Q ss_pred CcchhHHHHHHHHHH---H-HhCCCHH-HHHHHHhhcccc
Q 006186 252 GDPYLLHCVETAMLL---A-AIGANST-VVAAGLLHDTLD 286 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-elg~D~~-tIaAALLHDvVE 286 (657)
|...+.|.++||.+. + .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 334688999999763 3 6788874 456999999854
No 41
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=38.07 E-value=1.1e+02 Score=30.77 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHH-HHHHhhcc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVV-AAGLLHDT 284 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tI-aAALLHDv 284 (657)
.|.+++++-...-...--.=.+|-|.|++..|+-...-.-|.+-+ .+||+||.
T Consensus 74 ~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 74 TIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred eHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 366777665554332211236899999999999888665555544 68899985
No 42
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=37.71 E-value=54 Score=33.16 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=40.0
Q ss_pred CcchhHHHHHHHHHH---H-HhCCCHHH-HHHHHhhccccc-c--------cCCHHHHHHH-hcHHHHHHHHHhhc
Q 006186 252 GDPYLLHCVETAMLL---A-AIGANSTV-VAAGLLHDTLDD-A--------FLSYDYIFRT-FGAGVADLVEGVSK 312 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-elg~D~~t-IaAALLHDvVED-T--------~vT~eeI~~~-FG~eVA~LV~gVTK 312 (657)
.+..+-||++|+... | ++|-|++. -.+|||||.==+ | -.+.+-|++. -.++|++.|.+=..
T Consensus 45 ~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~ 120 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAA 120 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhh
Confidence 356789999987653 3 78988764 568999996322 1 1334444443 66788888776543
No 43
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.49 E-value=1.4e+02 Score=26.21 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCcc
Q 006186 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS 443 (657)
Q Consensus 366 p~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~-re~~i~~v~~~L~~~L~~~gI~ 443 (657)
+.+.-..+|..-=.=+-+||.+||+.. .+++.+- .-+|+.+....+.|..-. ++. -+.-.+.|.++|.+.|+.
T Consensus 6 t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g-~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 6 TGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREG-SQATPETLITALNAAGLN 79 (86)
T ss_pred CHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHcCcH
Confidence 344444555554456788999999975 5666544 345777777777766532 222 234466777788877754
No 44
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=36.12 E-value=1.7e+02 Score=29.53 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=72.6
Q ss_pred hhccChh-hHHHHHHhhhhhccCC-chhhHHHHHHHhh-hhhhhHHHHHHHHHHHHHhcCcceecccccccChHHHHHHH
Q 006186 385 ANRLGIS-TWKVQLENLCFKHLNP-DQHTELSSKLVEC-FDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKM 461 (657)
Q Consensus 385 A~RLGi~-~lK~ELEDLsFk~L~P-~~Y~~i~~~L~~~-~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km 461 (657)
|.+-++. -+..-|..+.+...-| +..++++...... .+...+......|...|+++||+..-++|= .+ ..+
T Consensus 12 a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~~gI~~~~lKG~-----~l-~~~ 85 (249)
T PF14907_consen 12 ARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRLLAELQEILAALNANGIPVILLKGA-----AL-AQL 85 (249)
T ss_pred HHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEchH-----HH-HHh
Confidence 3333443 2455566666555556 4555555554443 355556667777888999999987645552 11 111
Q ss_pred hhCCCCccccccceEEEEEECChHHHHHHHHHHHhh-cCCCCCcccccccCCCCCCccceeEEEEc-CCceeEEEEEeeh
Q 006186 462 LKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQL-WAEVPGKMKDYITRPKFNGYQSLHTVVTG-EGLVPLEVQIRTK 539 (657)
Q Consensus 462 ~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l-~~pip~r~kDYIa~PK~NGYqSLHt~V~~-~~g~~vEIQIRT~ 539 (657)
- .........| +-|.|. ++|..++..++.++ |.+... +++ |..... +.|..||++-|-.
T Consensus 86 Y-~~~~~R~~~D---iDlLV~-~~d~~~a~~~L~~~Gy~~~~~------------~~~--~~~~~~~~~~~~idlH~~l~ 146 (249)
T PF14907_consen 86 Y-PDPGLRPMGD---IDLLVP-PEDLERAVELLEELGYRIESP------------SEH--HWVYSHEPKGISIDLHWRLF 146 (249)
T ss_pred C-CCCCCCCCCC---eEEEEe-CCcHHHHHHHHHHcCCEeccC------------CCc--ceEEEecCCCEEEEEEecCC
Confidence 1 1111223333 467776 77888898888775 553321 111 333322 4566777776654
Q ss_pred hh
Q 006186 540 EM 541 (657)
Q Consensus 540 ~M 541 (657)
..
T Consensus 147 ~~ 148 (249)
T PF14907_consen 147 FP 148 (249)
T ss_pred CC
Confidence 44
No 45
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=35.07 E-value=38 Score=36.86 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHH----HhCCCH-HHHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~ILa----elg~D~-~tIaAALLHDvVED 287 (657)
++.+.|.+.||.+.. .+|.|. +.-.||||||+=..
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~ 234 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhcc
Confidence 456789999997643 446654 56789999998664
No 46
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=34.79 E-value=1.8e+02 Score=32.09 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=69.6
Q ss_pred hccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh--h-------hhhhHHHHHHHHHHHHHhcCcc------eeccccc
Q 006186 386 NRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--F-------DEAMVTSAIEKLEQALKDKNIS------FLVLCGR 450 (657)
Q Consensus 386 ~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~--~-------re~~i~~v~~~L~~~L~~~gI~------~~~V~gR 450 (657)
=|+|..--..|+-+.--+...|.....+....... . .-..+..-.+.|.+.|+..|+. +..|.-|
T Consensus 219 lRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~aNFvlv~ 298 (356)
T COG0079 219 LRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALGLFGVFPSQANFVLVR 298 (356)
T ss_pred hceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcEEEEE
Confidence 46666433445555555666666555555444322 1 1123455566778888876632 1234445
Q ss_pred ccC--hHHHHHHHhhCCCCcccccc--ce--EEEEEECChHHHHHHHHHHHhhc
Q 006186 451 HKS--LYSIHCKMLKKKLTMDEIHD--IY--GLRLIVENEEDCYQALRVVHQLW 498 (657)
Q Consensus 451 ~Ks--~ySI~~Km~rk~~~~~eI~D--l~--GiRIIv~~~~DCY~vlgiIh~l~ 498 (657)
.+. ...++++|.++|.-..+..+ +. .+||.+.+.+++.+++..|.+..
T Consensus 299 ~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een~~ll~AL~~~~ 352 (356)
T COG0079 299 VPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEENDRLLAALREVL 352 (356)
T ss_pred CCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 543 44799999999864433332 22 59999999999999999887643
No 47
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=33.51 E-value=1.6e+02 Score=26.76 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC-----hhhHHHHHHhhhhhccCCchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcC
Q 006186 367 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKN 441 (657)
Q Consensus 367 ~ekq~riA~ETleIYAPLA~RLG-----i~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~g 441 (657)
++.++.++...=.=+-.+|.+|| +.. .+++.+.-+|-.-..|..+.+.|+.-...+--..-+..|-++|...+
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 44566666665566788999999 554 46777777765554566666666543211111234455666777666
Q ss_pred cc
Q 006186 442 IS 443 (657)
Q Consensus 442 I~ 443 (657)
..
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 48
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=32.68 E-value=2.3e+02 Score=34.43 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=79.2
Q ss_pred CCHHHHHHHHhhccccccc---CCHHHHHH---HhcHHHHHHHHHh-hcccccchhHhhccccchHHHHHHHHHHHh---
Q 006186 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADRLHTMFL--- 340 (657)
Q Consensus 271 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gV-TKl~~l~~l~r~~~~~~k~~qaE~lRkmLL--- 340 (657)
.|+.++++.=|.+++.... ++.+|++. .+.++-..+|+++ -+.-.+.. -.+-+|++|-
T Consensus 480 vd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~------------l~~VLq~LL~E~V 547 (694)
T PRK12792 480 VDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSG------------LQAVLKLLLAERV 547 (694)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHH------------HHHHHHHHHHcCC
Confidence 3888888888888887542 44444333 3444555556553 22222211 1234555542
Q ss_pred hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhh
Q 006186 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCF 402 (657)
Q Consensus 341 AmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsF 402 (657)
++.|.+.++=-|||.-...++...+.+.-|+++++.-..-|+. ..+|-.+.+.-|+|++--
T Consensus 548 sIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~ 608 (694)
T PRK12792 548 SIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFH 608 (694)
T ss_pred ccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHH
Confidence 3448888888899888777777777788899999988888888 788888888888888543
No 49
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=31.41 E-value=2.3e+02 Score=30.08 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCcc------eecccccccChHHHHHHHhhCCCCccccccceEEEEEEC---ChHHHHHHHHHHHh
Q 006186 427 TSAIEKLEQALKDKNIS------FLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVE---NEEDCYQALRVVHQ 496 (657)
Q Consensus 427 ~~v~~~L~~~L~~~gI~------~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~---~~~DCY~vlgiIh~ 496 (657)
.+..+.|.+.|++.|.. ...|.-+.+....+.++|.++|.-......-..+||.+. +.+|+.++++.|.+
T Consensus 294 ~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 294 MENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 44455566666655532 112455667777899999988764433222246999985 78999999988864
No 50
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=2.8e+02 Score=30.07 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=68.1
Q ss_pred hhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhh----cc-CCchhhHHHHHHHhhh------
Q 006186 353 ADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK----HL-NPDQHTELSSKLVECF------ 421 (657)
Q Consensus 353 ADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk----~L-~P~~Y~~i~~~L~~~~------ 421 (657)
.-+.+|.-.+...++++|.++..|++++.+ ..-|...+-..+--+.|+ ++ +++-|++.+++.++..
T Consensus 12 l~q~~~~~~~~t~ded~~~~~~~~~~~lls---~~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~ 88 (285)
T COG1578 12 LRQAVNAVKLATDDEDLRSRIMSEALKLLS---EEYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPK 88 (285)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---hhhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334444444455678999999999998844 445555555555555554 33 4666888877765532
Q ss_pred -hh---hhHHHHHHHHHHHHHhcCcceecccc-cccChHHHHHHHhhCCCCc
Q 006186 422 -DE---AMVTSAIEKLEQALKDKNISFLVLCG-RHKSLYSIHCKMLKKKLTM 468 (657)
Q Consensus 422 -re---~~i~~v~~~L~~~L~~~gI~~~~V~g-R~Ks~ySI~~Km~rk~~~~ 468 (657)
|+ ..-..+...++-+...+-|.+- |.| +++.+....+||.+.+...
T Consensus 89 vr~~~~~~~~dl~~Avk~ai~GN~iDfg-v~G~~~~~lee~~~~~~~~~l~i 139 (285)
T COG1578 89 VRENIEDTPEDLKTAVKLAIVGNVIDFG-VLGFSPFDLEEEVEKLLDAELYI 139 (285)
T ss_pred HHhcccCChHHHHHHHHHHHHhcceeec-cccCCHhHHHHHHHHhhcCcccc
Confidence 22 1112233444444445667774 886 8888888888888777643
No 51
>PRK15337 type III secretion system protein InvA; Provisional
Probab=29.51 E-value=2e+02 Score=34.78 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=81.2
Q ss_pred HHHHHHhCC---CHHHHHHHHhhccccccc---CCHHHHH---HHhcHHHHHHHHHhhcccccchhHhhccccchHHHHH
Q 006186 263 AMLLAAIGA---NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (657)
Q Consensus 263 A~ILaelg~---D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE 333 (657)
...+...|+ |+.+++|.=|..++.... ++.+|++ +...++-..+|+.+.+.-.+.. -.+
T Consensus 465 ~~~a~~~Gytvvd~~svi~tHl~evi~~~a~ellg~qev~~Lld~l~~~~p~Lv~elp~~l~l~~------------i~~ 532 (686)
T PRK15337 465 TEKLAKLGYVLRSAIDELYHCLSVLLLHNINEFFGIQETKHLLDQLEKKYPDLLKEVYRHATVQR------------ISE 532 (686)
T ss_pred HHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCHHHHHHHhccCCHHH------------HHH
Confidence 334444453 788888888877776542 4554433 3355666667777633222221 123
Q ss_pred HHHHHH---hhccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhh
Q 006186 334 RLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (657)
Q Consensus 334 ~lRkmL---LAmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLs 401 (657)
-+|++| +.+.|.+.++=-|||.-...++...+.+.-|+++++.-..-|+ -...|-+..+..++|++-
T Consensus 533 VLq~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~-~~g~L~vi~L~~~~E~~l 602 (686)
T PRK15337 533 VLQRLLSERISIRNMKLIMEALALWAPREKDVIMLVEHVRGALARYICHKFA-AGGELRAVVLSAEVEDAI 602 (686)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc-cCCceEEEEeCHHHHHHH
Confidence 455544 2345888888889998777777777778889999988776677 456688888888888754
No 52
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.83 E-value=9.9e+02 Score=27.93 Aligned_cols=94 Identities=10% Similarity=0.173 Sum_probs=57.5
Q ss_pred ccccCCHHHHHHHhc----HHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhccc
Q 006186 286 DDAFLSYDYIFRTFG----AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMT 361 (657)
Q Consensus 286 EDT~vT~eeI~~~FG----~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRt 361 (657)
++..+|.++|.+..| ..|.+|++.+.+-.. ......++.++..-.|+..++--|++.++++..
T Consensus 240 ~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~-------------~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~ 306 (507)
T PRK06645 240 SDNIISPQVINQMLGLVDSSVIIEFVEYIIHRET-------------EKAINLINKLYGSSVNLEIFIESVSDFIAYLNK 306 (507)
T ss_pred CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344699999999887 478888888754211 112345666554445899999999999999987
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhccChhhH
Q 006186 362 LDALPLCKRQRFAKETLEIFVPLANRLGISTW 393 (657)
Q Consensus 362 L~~lp~ekq~riA~ETleIYAPLA~RLGi~~l 393 (657)
++.++...+. +..+..+-+.-+|..+++..+
T Consensus 307 ~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 337 (507)
T PRK06645 307 VKMLPNYSLP-IYESFNDRTKSILDKISLPHL 337 (507)
T ss_pred HHhccccccc-cchhHHHHHHHHHHhCCHHHH
Confidence 7655532221 222222334445555555443
No 53
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=28.81 E-value=1.5e+02 Score=35.88 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCC---CHHHHHHHHhhccccccc---CCHHHHH---HHhcHHHHHHHHHhhcccccchhHhhccccchHH
Q 006186 260 VETAMLLAAIGA---NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTV 330 (657)
Q Consensus 260 l~VA~ILaelg~---D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~ 330 (657)
-+-...+...|. |+.++++.-|..++.-.. ++.+|++ +..+++-..+|+.+.+.-.+..
T Consensus 452 ~~~~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~------------ 519 (677)
T TIGR01399 452 EEGAEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQR------------ 519 (677)
T ss_pred HHHHHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------
Confidence 333444445553 788888888888876542 4544433 3456666677777633222221
Q ss_pred HHHHHHHHHh---hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhh
Q 006186 331 EADRLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (657)
Q Consensus 331 qaE~lRkmLL---AmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLs 401 (657)
-.+-+|++|- .+.|.+.++=-|||.-..-++...+.+.-|+++++.--.-|++-.+.|-+..+.-++|+.-
T Consensus 520 i~~VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l 593 (677)
T TIGR01399 520 IAEVLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELI 593 (677)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHH
Confidence 1234555542 3348888888889887777777777778888888876666666555677777878888754
No 54
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=28.47 E-value=43 Score=38.07 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCcccc--C---cchhHHHHHHHHHHHH----h-C---------C-CHH-HHHHHHhhcccc
Q 006186 231 DFVIKAFYEAERAHRGQMRAS--G---DPYLLHCVETAMLLAA----I-G---------A-NST-VVAAGLLHDTLD 286 (657)
Q Consensus 231 ~ll~kA~~~A~~aH~GQ~Rks--G---ePYI~Hpl~VA~ILae----l-g---------~-D~~-tIaAALLHDvVE 286 (657)
++|...-.|=.-.++-|.-.. + ..=++|.++||.+-.. + + . +.+ +-+|||+||+=-
T Consensus 30 dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiGh 106 (432)
T PRK05318 30 ARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIGH 106 (432)
T ss_pred HHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCCC
Confidence 445544455444556663221 1 2237999999987543 3 1 1 345 348899999854
No 55
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=27.88 E-value=3.3e+02 Score=28.84 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCcc-e-----ecccccccChHHHHHHHhhCCCCccccccceEEEEEE---CChHHHHHHHHHHHhh
Q 006186 427 TSAIEKLEQALKDKNIS-F-----LVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIV---ENEEDCYQALRVVHQL 497 (657)
Q Consensus 427 ~~v~~~L~~~L~~~gI~-~-----~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv---~~~~DCY~vlgiIh~l 497 (657)
.+..+.|.+.|++.|+. . ..|..+.+....+.++|.++|.-..-...--.+||.+ .+++|+.++++.|.+.
T Consensus 289 ~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~ 368 (371)
T PRK13520 289 MENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEV 368 (371)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 34445566666655654 1 1244455667788899988876443333234699977 4789999999988765
Q ss_pred c
Q 006186 498 W 498 (657)
Q Consensus 498 ~ 498 (657)
.
T Consensus 369 ~ 369 (371)
T PRK13520 369 K 369 (371)
T ss_pred h
Confidence 3
No 56
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=27.76 E-value=60 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHh-----CCCHH-HHHHHHhhcccc
Q 006186 255 YLLHCVETAMLLAAI-----GANST-VVAAGLLHDTLD 286 (657)
Q Consensus 255 YI~Hpl~VA~ILael-----g~D~~-tIaAALLHDvVE 286 (657)
.+.|-++|+.++..+ .+|.+ .+++|||||+=.
T Consensus 160 LleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiGK 197 (314)
T PRK13480 160 LAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGK 197 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhhh
Confidence 578999999887654 46766 667779999753
No 57
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=27.59 E-value=2.9e+02 Score=35.67 Aligned_cols=8 Identities=50% Similarity=0.837 Sum_probs=3.2
Q ss_pred cCCCCCcc
Q 006186 126 YSRSSPPI 133 (657)
Q Consensus 126 ~~~~~~~~ 133 (657)
|||.||+.
T Consensus 1571 ysptspsy 1578 (1605)
T KOG0260|consen 1571 YSPTSPSY 1578 (1605)
T ss_pred CCCCCCCc
Confidence 33444433
No 58
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.87 E-value=1.1e+02 Score=35.05 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHhcCCccc--cC---cchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 006186 229 REDFVIKAFYEAERAHRGQMRA--SG---DPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (657)
Q Consensus 229 d~~ll~kA~~~A~~aH~GQ~Rk--sG---ePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVE 286 (657)
|.++|...-.|-.-.++-|.-. .| ..-++|.++||.+-. .++.+.+ +.+|||+||+=-
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 3355666666666677777543 22 234799999998754 4566544 568899999854
No 59
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=25.48 E-value=2.2e+02 Score=30.34 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhcc-CCchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCc
Q 006186 364 ALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-NPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNI 442 (657)
Q Consensus 364 ~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L-~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI 442 (657)
.+.|+.-+|+++|++.-+-.+... +..-|..|...+=.|+ .+-.|+.+.+.+.+...-.-.+.+...+++.|+.
T Consensus 7 ~v~p~tV~rl~~~~~~~~~~~k~a--~k~~k~~LH~i~gay~~~~p~~~~ll~~l~~a~~~~D~e~~~~~~r~lL~~--- 81 (251)
T PF07091_consen 7 SVAPETVRRLAREALARRGDLKEA--VKATKRRLHQIFGAYLEGRPDYDALLRKLQEALDVGDPEAIRAWCRRLLAG--- 81 (251)
T ss_dssp TB-HHHHHHHHHHHHCTTT-HHHH--HHHHHHHHHCCTCCCSSS---HHHHHHHHHHHHCTTHHHHHHHHHHHHHHT---
T ss_pred ccCHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccCcCCHHHHHHHHHHHHhh---
Confidence 346777788888887555554443 4567899999988888 3444777777777632111123344555566653
Q ss_pred ceecccccccChHHHHHHHhhCCCCcccc---------------ccceEEEEEECCh-HHHHHHHHHHHhhcCC-CCCcc
Q 006186 443 SFLVLCGRHKSLYSIHCKMLKKKLTMDEI---------------HDIYGLRLIVENE-EDCYQALRVVHQLWAE-VPGKM 505 (657)
Q Consensus 443 ~~~~V~gR~Ks~ySI~~Km~rk~~~~~eI---------------~Dl~GiRIIv~~~-~DCY~vlgiIh~l~~p-ip~r~ 505 (657)
.+ +...|...+.-+|.++...=.+.+-| ..--+.+.+-.+. ..+..+++.+-....+ .--++
T Consensus 82 Ha-ST~ERl~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v 160 (251)
T PF07091_consen 82 HA-STRERLPNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARV 160 (251)
T ss_dssp SH-HHHCCGGGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE
T ss_pred cc-chhhhhhhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE
Confidence 33 58899999999999997642222333 3333456666654 4566666555444332 12345
Q ss_pred cccccC
Q 006186 506 KDYITR 511 (657)
Q Consensus 506 kDYIa~ 511 (657)
.|-...
T Consensus 161 ~Dl~~~ 166 (251)
T PF07091_consen 161 RDLLSD 166 (251)
T ss_dssp E-TTTS
T ss_pred eeeecc
Confidence 565554
No 60
>COG2733 Predicted membrane protein [Function unknown]
Probab=24.68 E-value=7.7e+02 Score=28.22 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=59.8
Q ss_pred hhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhcc-----CCchhhHHHHHHHhhhhhhh
Q 006186 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL-----NPDQHTELSSKLVECFDEAM 425 (657)
Q Consensus 351 KLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L-----~P~~Y~~i~~~L~~~~re~~ 425 (657)
..|-|+-|+-+ .++..+++++||+.+-.-++.-|.=..++.-++-+-.++| .|-.=.-+...+.+..-+..
T Consensus 109 ~~a~~igewls----~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~~~~~~vL~~l~~d~r~q~l 184 (415)
T COG2733 109 DIASRIGEWLS----QPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLGPTAGRVLESLTADDRHQAL 184 (415)
T ss_pred CHHHHHHHHhc----CchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccHHHH
Confidence 34556666643 3566788999999998888888877777777777766654 33332222222223334778
Q ss_pred HHHHHHHHHHHHHhcCcc
Q 006186 426 VTSAIEKLEQALKDKNIS 443 (657)
Q Consensus 426 i~~v~~~L~~~L~~~gI~ 443 (657)
+++++..|...+....+.
T Consensus 185 ~D~~~~~L~r~~~~~~v~ 202 (415)
T COG2733 185 LDKLIDRLIRWLLNDKVR 202 (415)
T ss_pred HHHHHHHHHHHhhhhhhH
Confidence 899999998888877765
No 61
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=23.06 E-value=1.3e+03 Score=27.56 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=40.3
Q ss_pred ccCCHHHHHHHhc----HHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhccccc
Q 006186 288 AFLSYDYIFRTFG----AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLD 363 (657)
Q Consensus 288 T~vT~eeI~~~FG----~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRtL~ 363 (657)
..+|.++|++.+| ..|.++++.+.+-. . ..-...++.++..-.++..++--|++.+++|-.++
T Consensus 243 g~It~e~V~~llg~~~~~~if~L~~ai~~gd-~------------~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK 309 (598)
T PRK09111 243 GEVTAEAVRDMLGLADRARVIDLFEALMRGD-V------------AAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLK 309 (598)
T ss_pred CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCC-H------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999988 56777777664421 1 01123445543222477778888888888776554
Q ss_pred C
Q 006186 364 A 364 (657)
Q Consensus 364 ~ 364 (657)
.
T Consensus 310 ~ 310 (598)
T PRK09111 310 I 310 (598)
T ss_pred h
Confidence 3
No 62
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=22.76 E-value=1.9e+02 Score=30.31 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=30.6
Q ss_pred HHHHHHHhCC---CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 006186 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (657)
Q Consensus 262 VA~ILaelg~---D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (657)
|+..+..+|. |+|.++ |++++-+.-....|.+.||.+|
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei 57 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI 57 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee
Confidence 3445555663 777776 8999999999999999999998
No 63
>PHA03246 large tegument protein UL36; Provisional
Probab=22.25 E-value=3.6e+02 Score=37.28 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=77.4
Q ss_pred HHHHhhccccccc-C-CHHHHHHHhc-------------HHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhh
Q 006186 277 AAGLLHDTLDDAF-L-SYDYIFRTFG-------------AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLA 341 (657)
Q Consensus 277 aAALLHDvVEDT~-v-T~eeI~~~FG-------------~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLA 341 (657)
-|.||-|.++-+. + +.+.|..-++ .+...|++.++.+.. |.....+...+.++|+.|=-
T Consensus 934 ~a~LL~dLL~~G~dL~~d~~L~aWlall~eAqt~G~I~RrEld~L~reI~~INe-----rAarRaS~~AELeRF~aLsA- 1007 (3095)
T PHA03246 934 ESQLLGDLLEIGSHLDVPENLVTWKGLMVSVQTGGWISRRELDLLLKEVDAVND-----NAARRETALTELERLHELES- 1007 (3095)
T ss_pred HHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHhH-----HHHhhhhhhhHHHHHHHHHH-
Confidence 4679999998764 3 3333433221 234445554444332 11112233345677776432
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhh
Q 006186 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 421 (657)
Q Consensus 342 maD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~ 421 (657)
.+++-++-+-+..-...+...|.|.|.+. .|+.|+=..+..+| -|+.-. +|+.+.
T Consensus 1008 ---------Av~~~~d~~~~~~~~~lde~iR~aedlvr----qak~l~~~kl~~~L--------s~e~R~----rl~~Rr 1062 (3095)
T PHA03246 1008 ---------RIASYTDLETTVDLQKLDEALKLANSIVK----LTKGLDGAKLASSL--------SSDIRE----KIRQKR 1062 (3095)
T ss_pred ---------HHHHhhhhhcccCccccHHHHHHHHHHHH----HHHHhhhhhhhccc--------CHHHHH----HHHHHH
Confidence 22333333322222223455666666643 34444444444443 344433 443332
Q ss_pred hhhhHHHHHHHHHHHHHhcCcceecccccccChHHHHHHHhhCCCCccccccceEEEEEECC
Q 006186 422 DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVEN 483 (657)
Q Consensus 422 re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~ 483 (657)
+| ++.+++..++..+ .|+.|.-.+|+=.++|.| -+.|.+|+|.....
T Consensus 1063 ~e--vEtl~~~aR~R~~-------eikaar~~~Y~~L~~lLr------PL~~FvGLRaa~~~ 1109 (3095)
T PHA03246 1063 SE--TETLIARLSARYA-------EVKAAVDGLYSSIRKLLR------PLQNFAGLRALDST 1109 (3095)
T ss_pred HH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc------ccccccccccchhH
Confidence 22 2333444443332 355655555555555544 46888899988764
No 64
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=21.65 E-value=4.1e+02 Score=32.29 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=75.2
Q ss_pred CHHHHHHHHhhccccccc---CCHHHHHH---HhcHHHHHHHHHhhc-ccccchhHhhccccchHHHHHHHHHHH---hh
Q 006186 272 NSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSK-LSQLSKLARENNTASKTVEADRLHTMF---LA 341 (657)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTK-l~~l~~l~r~~~~~~k~~qaE~lRkmL---LA 341 (657)
|+.++++.=|..++.... ++.+|+++ ...++-..+|+.+.. .-.+.. -.+-+|++| +.
T Consensus 467 d~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~~~~p~lveel~p~~~~l~~------------l~~VLq~LL~E~Vs 534 (678)
T TIGR01398 467 DPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGT------------IQKVLQLLLRERVS 534 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHChHHHHHhccCCCCHHH------------HHHHHHHHHhcCCc
Confidence 777777777777776532 34444332 344555556666533 111111 123455544 23
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhh
Q 006186 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC 401 (657)
Q Consensus 342 maD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLs 401 (657)
+.|.+.++=-|||.-..-++...+.+.-|+++++.--.-|++--+.|-...+..++|++-
T Consensus 535 IRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~l~p~~E~~l 594 (678)
T TIGR01398 535 IRNLPTILETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAAL 594 (678)
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHH
Confidence 348888888888887777777777788899999877777776566688888888888754
No 65
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=21.33 E-value=1.8e+02 Score=24.88 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=41.1
Q ss_pred cceEEEEEECChHHHHHHHHHHHhhc-CCCCCcccccccCCCCCCccceeEE-EEcCCceeEEE
Q 006186 473 DIYGLRLIVENEEDCYQALRVVHQLW-AEVPGKMKDYITRPKFNGYQSLHTV-VTGEGLVPLEV 534 (657)
Q Consensus 473 Dl~GiRIIv~~~~DCY~vlgiIh~l~-~pip~r~kDYIa~PK~NGYqSLHt~-V~~~~g~~vEI 534 (657)
.+.++-.++.+.+|+.++...+.+.- ++ +..|+...+.+..+. +.+|+|..+||
T Consensus 73 ~~~~i~~~~~~~~dl~~~~~~l~~~g~~~--------~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 73 GGHHIAFLAFDVDDLDAAYERLKAQGVEI--------VEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHTTGEE--------EEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cceeEEEEeccHHHHHHHHHHHhhcCccE--------EecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 46789999999999999998888763 22 123445566677765 88999999886
No 66
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=21.21 E-value=6.3e+02 Score=31.13 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=46.2
Q ss_pred hccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh
Q 006186 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC 420 (657)
Q Consensus 341 AmaD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~ 420 (657)
.+.++. ||||-+.+.-.+ +.+..|. ..|+.++---|-.- +.-++.|++.+-+ .-..-.++++.++++
T Consensus 159 ~i~~~~----klad~iaa~l~~---~~~~kQ~-iLe~~~v~~Rlek~--l~~l~~ei~~~~~---ek~I~~kVk~~meK~ 225 (782)
T COG0466 159 SIDDPG----KLADTIAAHLPL---KLEEKQE-ILETLDVKERLEKL--LDLLEKEIDLLQL---EKRIRKKVKEQMEKS 225 (782)
T ss_pred cccchH----HHHHHHHHhCCC---CHHHHHH-HHHhCCHHHHHHHH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344555 999998766544 2222222 24444443333222 2345666664433 233344556666666
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 006186 421 FDEAMVTSAIEKLEQALK 438 (657)
Q Consensus 421 ~re~~i~~v~~~L~~~L~ 438 (657)
.||-++.+=...|++.|-
T Consensus 226 QREyyL~EQlKaIqkELG 243 (782)
T COG0466 226 QREYYLREQLKAIQKELG 243 (782)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777777776666777664
No 67
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.53 E-value=68 Score=37.26 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=35.2
Q ss_pred CCCCCCCCCCcccCCCCCCCCCEEEEEEeCC-----cccceeccccceeceeeeeeccC
Q 006186 602 TFPSHADDCPFSYKPQCSHDGPVFVIMIEND-----KVSFKYHFQCYVSMKWKYMCSFS 655 (657)
Q Consensus 602 lFP~h~~dc~y~ftp~~~~~g~~~~i~~~~~-----~~sv~El~~~~~~~~~~~~~~~~ 655 (657)
=|+.-+||.+|-+.|. +.-|.|+..++ .|...+++++|+.+. ||||-
T Consensus 280 df~~gsdd~ey~w~p~----el~fgiIradgpek~~a~~~~~fsn~~kdI~---~~Sfq 331 (587)
T COG3934 280 DFHLGSDDSEYTWGPM----ELEFGIIRADGPEKIDAMTLHIFSNNWKDIS---MCSFQ 331 (587)
T ss_pred CCccCCCCCCCccccc----cceeeeecCCCchhhhHHHHHHhccccceee---eeccc
Confidence 3566688999999998 44556777766 455667788888887 99984
Done!