Query 006186
Match_columns 657
No_of_seqs 368 out of 2017
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1E-106 4E-111 870.7 28.4 366 214-587 9-379 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 2.3E-45 8E-50 374.8 12.5 194 379-588 19-223 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 6.2E-39 2.1E-43 322.6 12.6 156 444-604 42-213 (226)
4 3nqw_A CG11900; stringent resp 100.0 1.9E-35 6.5E-40 287.7 9.2 165 228-403 4-175 (179)
5 3nr1_A HD domain-containing pr 100.0 7.3E-34 2.5E-38 276.4 12.9 145 229-384 3-156 (178)
6 3b57_A LIN1889 protein; Q92AN1 93.7 0.2 6.9E-06 48.8 8.9 55 231-288 5-64 (209)
7 2pjq_A Uncharacterized protein 93.2 0.28 9.5E-06 48.7 9.0 56 228-286 7-67 (231)
8 3dto_A BH2835 protein; all alp 93.1 0.37 1.3E-05 48.0 9.8 55 230-287 4-63 (223)
9 2qgs_A Protein Se1688; alpha-h 92.5 0.64 2.2E-05 45.8 10.5 54 231-287 5-64 (225)
10 3djb_A Hydrolase, HD family; a 92.1 0.49 1.7E-05 47.1 9.1 55 230-287 4-63 (223)
11 2pq7_A Predicted HD superfamil 89.6 2.6 8.8E-05 41.0 11.5 50 232-284 14-68 (220)
12 2paq_A 5'-deoxynucleotidase YF 89.3 2.8 9.7E-05 40.9 11.5 95 252-359 29-144 (201)
13 2ibn_A Inositol oxygenase; red 74.1 3.2 0.00011 42.2 5.0 55 232-286 37-92 (250)
14 2ogi_A Hypothetical protein SA 62.5 5.9 0.0002 38.0 4.0 34 254-287 26-64 (196)
15 4dmb_A HD domain-containing pr 59.9 15 0.0005 36.3 6.4 93 252-360 43-149 (204)
16 3ccg_A HD superfamily hydrolas 59.3 7.3 0.00025 37.0 4.0 33 255-287 20-57 (190)
17 2o08_A BH1327 protein; putativ 59.0 7.4 0.00025 36.9 4.0 34 254-287 18-56 (188)
18 3kh1_A Predicted metal-depende 57.5 23 0.00077 34.7 7.3 56 232-287 9-80 (200)
19 2cqz_A 177AA long hypothetical 56.6 9.1 0.00031 36.4 4.2 35 253-287 31-75 (177)
20 2dqb_A Deoxyguanosinetriphosph 55.8 8.1 0.00028 41.4 4.1 33 254-286 75-112 (376)
21 3m1t_A Putative phosphohydrola 49.6 78 0.0027 31.6 10.0 33 253-285 104-141 (275)
22 3mzo_A LIN2634 protein; HD-dom 48.5 62 0.0021 31.9 8.8 36 252-287 28-73 (216)
23 2hek_A Hypothetical protein; p 43.9 14 0.00049 39.3 3.6 35 253-287 49-89 (371)
24 3a5i_A Flagellar biosynthesis 42.9 41 0.0014 36.2 7.0 183 272-480 180-383 (389)
25 2gz4_A Hypothetical protein AT 39.7 23 0.00079 35.0 4.1 35 253-287 54-90 (207)
26 4a5p_A Protein MXIA, protein V 38.8 47 0.0016 35.7 6.7 190 271-480 173-380 (383)
27 2huo_A Inositol oxygenase; pro 37.1 38 0.0013 35.1 5.3 53 232-284 76-129 (289)
28 3hvz_A Uncharacterized protein 32.9 5.1 0.00018 33.7 -1.5 31 602-652 3-33 (78)
29 1ynb_A Hypothetical protein AF 32.2 74 0.0025 30.4 6.2 35 253-287 37-79 (173)
30 1xx7_A Oxetanocin-like protein 30.7 41 0.0014 32.4 4.2 35 253-287 36-80 (184)
31 2q14_A Phosphohydrolase; BT420 30.2 20 0.00069 38.8 2.1 33 254-286 55-100 (410)
32 3ssb_I IMPI alpha, inducible m 29.4 8.8 0.0003 27.2 -0.6 15 158-172 11-25 (32)
33 3tm8_A BD1817, uncharacterized 28.0 37 0.0013 35.1 3.6 35 251-285 162-206 (328)
34 3gw7_A Uncharacterized protein 27.7 33 0.0011 34.3 3.0 32 256-287 27-63 (239)
35 2x49_A INVA, invasion protein 27.5 96 0.0033 32.6 6.6 186 272-480 124-330 (333)
36 3irh_A HD domain protein; phos 27.4 24 0.00082 39.1 2.1 31 255-285 87-137 (480)
37 3u1n_A SAM domain and HD domai 25.3 28 0.00094 39.1 2.1 33 254-286 65-112 (528)
38 3d5l_A Regulatory protein RECX 22.4 49 0.0017 32.4 3.1 100 395-501 61-173 (221)
39 4i1u_A Dephospho-COA kinase; s 21.4 52 0.0018 32.2 3.0 39 261-303 24-65 (210)
40 3mix_A Flagellar biosynthesis 20.6 1.5E+02 0.0053 31.7 6.7 186 272-479 169-376 (382)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1e-106 Score=870.72 Aligned_cols=366 Identities=39% Similarity=0.600 Sum_probs=312.1
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhcccccccCCHH
Q 006186 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (657)
Q Consensus 214 ~~~ll~~~~~~~~~~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D~~tIaAALLHDvVEDT~vT~e 293 (657)
+.+|+..+..+.+..+.++|.+|+.||.++|.||+|++|+|||.||++||.||+++|+|.++++||||||++|||.+|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 45788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcc-CceeehhhhhhhhhhcccccCCCHHHHHH
Q 006186 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (657)
Q Consensus 294 eI~~~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAma-D~RavLIKLADRLhNMRtL~~lp~ekq~r 372 (657)
+|++.||++||.||+||||+++++... ....|+|++|||||||+ |+||++|||||||||||++..+|+++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 999999999999999999999876421 23457999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhh--hhhhHHHHHHHHHHHHHhcCcceeccccc
Q 006186 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (657)
Q Consensus 373 iA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~--re~~i~~v~~~L~~~L~~~gI~~~~V~gR 450 (657)
+|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+.. ++.+++.+++.|++.|++.||.+. |+||
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 9999999999999999999999999999999999999999999999864 789999999999999999999985 9999
Q ss_pred ccChHHHHHHHhhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEEcCCce
Q 006186 451 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV 530 (657)
Q Consensus 451 ~Ks~ySI~~Km~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~~~~g~ 530 (657)
+|++||||+||+||+.+|++|+|++|+||||++.+|||+++|+||++|+|+|++|||||++||+||||||||+|.+|.|
T Consensus 242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~- 320 (393)
T 1vj7_A 242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG- 320 (393)
T ss_dssp CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeehhhhHHHHhhhhhhcccccCCCCC--chhHHHHHHHHHHHHHHhhhhhccC
Q 006186 531 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH--SSFVLQMVEWARWVLTWQCEAMSKD 587 (657)
Q Consensus 531 ~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~--~~~~~~~~~wLr~Lle~q~e~~~~~ 587 (657)
++||||||.+||.|||+|||+||+||++.... .....++++||++|+|||++..|+.
T Consensus 321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ 379 (393)
T 1vj7_A 321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDA 379 (393)
T ss_dssp EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC--------
T ss_pred eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999999999999875321 1233457899999999999887743
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=2.3e-45 Score=374.75 Aligned_cols=194 Identities=22% Similarity=0.309 Sum_probs=150.1
Q ss_pred HHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCcceecccccccChHHHH
Q 006186 379 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 458 (657)
Q Consensus 379 eIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~re~~i~~v~~~L~~~L~~~gI~~~~V~gR~Ks~ySI~ 458 (657)
.||||||+||||..+|.|+|++.+.|.. .+.+++.+| +.+.+.+...+....|. .|++|+|+++||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~~--a~~el~~kl---------~~l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYIQ--AVGELKIKF---------RGIRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHHH--HHHHHHHHH---------HHHHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHH---------HHHHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 6999999999999999999999887653 555555544 22333334344444554 5999999999999
Q ss_pred HHHhhCCCCcc----ccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccceeEEEE-------cC
Q 006186 459 CKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVT-------GE 527 (657)
Q Consensus 459 ~Km~rk~~~~~----eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqSLHt~V~-------~~ 527 (657)
+||.|++.+++ +|+|++|+||||.+.+|||+++++||+.|+|.|.++||||++||+|||||||++|. ++
T Consensus 86 ~Km~Rk~~~~~~~~~~I~Di~GiRII~~~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~ 165 (255)
T 3l9d_A 86 EKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINNLKPSGYRSYHVIVEYPVDTISGQ 165 (255)
T ss_dssp HHHHHHTCCGGGHHHHCSCSEEEEEEESSTTHHHHHHHHHHTCSSSEEEEEEEESCC-CCCSCCEEEEEEEEEEEETTEE
T ss_pred HHHHhcCCCccchhhhccccceEEEEEeCHHHHHHHHHHHHhcCCCceeeeeccccCCCCCCceeEEEEEEcccccccCC
Confidence 99999999987 79999999999999999999999999999999999999999999999999999997 56
Q ss_pred CceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCchhHHHHHHHHHHHHHHhhhhhccCC
Q 006186 528 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDR 588 (657)
Q Consensus 528 ~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~~~~~~~~~wLr~Lle~q~e~~~~~~ 588 (657)
.+.++||||||.+||.|||+||+.+|+|+... +..+.+.+..++.+++..++.+...+
T Consensus 166 ~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~~---p~~i~r~L~~~A~~l~~~D~~m~~Ir 223 (255)
T 3l9d_A 166 RIIMAEIQIRTLAMNFWATIEHSLNYKYHGEF---PEDIKRRLELTSKIAFQLDEEMRQIR 223 (255)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CceEEEEEECCHHHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999654 34677888888999999988887665
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=6.2e-39 Score=322.62 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=130.7
Q ss_pred eecccccccChHHHHHHHhhCCCCcc----ccccceEEEEEECChHHHHHHHHHHHhhcCCCCCcccccccCCCCCCccc
Q 006186 444 FLVLCGRHKSLYSIHCKMLKKKLTMD----EIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQS 519 (657)
Q Consensus 444 ~~~V~gR~Ks~ySI~~Km~rk~~~~~----eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pip~r~kDYIa~PK~NGYqS 519 (657)
++.|++|+|+++||++||.||+.+++ +|+|++|+||||++.+|||+++++||++|++.|.++||||++||+|||||
T Consensus 42 i~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~~~d~y~v~~~i~~~~~~~~~~~kDyI~~PK~nGYrS 121 (226)
T 2be3_A 42 IEFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRS 121 (226)
T ss_dssp EEEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESCGGGHHHHHHHHHTCSSEEEEEEEETTTTCCTTSCCC
T ss_pred cceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcCHHHHHHHHHHHHhccCCceeeecchhhcCCCCCceE
Confidence 34599999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred eeEEEE-------cCCceeEEEEEeehhhhHHHHhhhhhhcccccCCCCCc-hh----HHHHHHHHHHHHHHhhhhhccC
Q 006186 520 LHTVVT-------GEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS-SF----VLQMVEWARWVLTWQCEAMSKD 587 (657)
Q Consensus 520 LHt~V~-------~~~g~~vEIQIRT~~Mh~wAE~G~Aahw~YK~~~~~~~-~~----~~~~~~wLr~Lle~q~e~~~~~ 587 (657)
||++|. ++.|.++||||||.+||.|||+||++||+||++.+..- .. ......|.++|++|+++..+
T Consensus 122 lH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l~~~a~~~~~~d~~m~~i~~~i~~-- 199 (226)
T 2be3_A 122 YHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRLEITARIAHQLDEEMGEIRDDIQE-- 199 (226)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH--
T ss_pred EEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 999997 66789999999999999999999999999997653210 00 11245788888899888776
Q ss_pred CCCCCCCCCCCCCCCCC
Q 006186 588 RSCVGNGDSIKPPCTFP 604 (657)
Q Consensus 588 ~~s~~~~~~iK~~~lFP 604 (657)
+.+|++.++.+ +|.
T Consensus 200 --~~~~~~~~~~~-~~~ 213 (226)
T 2be3_A 200 --AQALFDPLSRK-LND 213 (226)
T ss_dssp --HHHHCCC--------
T ss_pred --hHHHHHHhhHH-Hhh
Confidence 55777888776 553
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-35 Score=287.72 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=137.8
Q ss_pred chHHHHHHHHHHHHHHhcCCccc--cCcchhHHHHHHHHHHH-HhCC-CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 006186 228 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (657)
Q Consensus 228 ~d~~ll~kA~~~A~~aH~GQ~Rk--sGePYI~Hpl~VA~ILa-elg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (657)
.|.++|.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||+||||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 45688999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHHHH-HHHHHHHHHHHH
Q 006186 304 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 382 (657)
Q Consensus 304 A~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRtL~~lp~ekq-~riA~ETleIYA 382 (657)
+.||++|||++.+++..+ +..|++++|+ .|+||++||||||+||||++..+|++.+ ..-+++.++.+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998875432 2356777764 6999999999999999999988776542 233456667777
Q ss_pred hhhhcc--ChhhHHHHHHhhhhh
Q 006186 383 PLANRL--GISTWKVQLENLCFK 403 (657)
Q Consensus 383 PLA~RL--Gi~~lK~ELEDLsFk 403 (657)
++++.| +=..|..+|.++.-+
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~ 175 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQ 175 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHH
Confidence 788777 333466666665443
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=276.43 Aligned_cols=145 Identities=32% Similarity=0.424 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--CcchhHHHHHHHHHH-HHhCC-CHHHHHHHHhhcccccccCCHHHHHHHhcHHHH
Q 006186 229 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (657)
Q Consensus 229 d~~ll~kA~~~A~~aH~GQ~Rks--GePYI~Hpl~VA~IL-aelg~-D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eVA 304 (657)
|.++|.+|+.||.++|.||+|++ |+|||.||++||.|| +++|+ |.++++||||||+||||.+|.++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 56789999999999999999986 999999999999999 58996 999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhccCceeehhhhhhhhhhcccccCCCHH-----HHHHHHHHHHH
Q 006186 305 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLC-----KRQRFAKETLE 379 (657)
Q Consensus 305 ~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLLAmaD~RavLIKLADRLhNMRtL~~lp~e-----kq~riA~ETle 379 (657)
.||++|||++.+++..+ +..|++++| ..|+||++|||||||||||++..++++ +..+|.+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998875332 234667654 369999999999999999999876554 44566666666
Q ss_pred HHHhh
Q 006186 380 IFVPL 384 (657)
Q Consensus 380 IYAPL 384 (657)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
No 6
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=93.75 E-value=0.2 Score=48.82 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHH-HHHHHHhhcccccc
Q 006186 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 288 (657)
Q Consensus 231 ~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILae----lg~D~~-tIaAALLHDvVEDT 288 (657)
+++.++..+......+. ...--+.|.+.|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666666655432 112228999999986543 467865 56899999997653
No 7
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=93.17 E-value=0.28 Score=48.73 Aligned_cols=56 Identities=23% Similarity=0.134 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hCCCHHH-HHHHHhhcccc
Q 006186 228 FREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLD 286 (657)
Q Consensus 228 ~d~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILae----lg~D~~t-IaAALLHDvVE 286 (657)
.+..++.++..+......++. ..-=+.|.+.|+..... .+.|.++ .+||||||+..
T Consensus 7 ~~~~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 7 ITETQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCHHHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 445667777777776655321 12238999999976543 4677764 58999999986
No 8
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=93.12 E-value=0.37 Score=47.98 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 006186 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVED 287 (657)
.++|.++..|+.+.+.+. .+.-=+.|..+|+.+.. ..+.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDD 63 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 367888889988887754 22344899999987544 3467764 5688999999853
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=92.49 E-value=0.64 Score=45.85 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH-----hCCCHH-HHHHHHhhccccc
Q 006186 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA-----IGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 231 ~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILae-----lg~D~~-tIaAALLHDvVED 287 (657)
+++.++..+......++ ...--+.|.+.|+..... .+.|.+ +.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45667777777766532 122347999999987433 355654 5699999999874
No 10
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=92.13 E-value=0.49 Score=47.09 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh----CCCHH-HHHHHHhhccccc
Q 006186 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 230 ~~ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILael----g~D~~-tIaAALLHDvVED 287 (657)
.++|.++..|+.+.+.+. .+.-=+.|.++|+.+...+ +.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 357888999998887764 2234489999999866543 56654 5689999999863
No 11
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=89.64 E-value=2.6 Score=40.99 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDT 284 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDv 284 (657)
++.++..+......+. +...-+.|.+.|+.+.. ..+.|.+ +..||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 4556667766665432 23344799999997654 3466754 5689999999
No 12
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=89.29 E-value=2.8 Score=40.94 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=52.4
Q ss_pred CcchhHHHHHHHHHH---H-----Hh--CCCH-HHHHHHHhhcccccc--cC-C-H----HHHHHHhcHHHHHHHHHhhc
Q 006186 252 GDPYLLHCVETAMLL---A-----AI--GANS-TVVAAGLLHDTLDDA--FL-S-Y----DYIFRTFGAGVADLVEGVSK 312 (657)
Q Consensus 252 GePYI~Hpl~VA~IL---a-----el--g~D~-~tIaAALLHDvVEDT--~v-T-~----eeI~~~FG~eVA~LV~gVTK 312 (657)
++.-..|.++||.+. + .+ ++|. .++.+|||||+.|-- ++ | . .++.+.+++.=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 577889999999753 3 22 4565 577889999998842 22 1 1 23433344322223333221
Q ss_pred ccccchhHhhccccchHHHHHHHHHHHhhc--cCceeehhhhhhhhhhc
Q 006186 313 LSQLSKLARENNTASKTVEADRLHTMFLAM--ADARAVLIKLADRLHNM 359 (657)
Q Consensus 313 l~~l~~l~r~~~~~~k~~qaE~lRkmLLAm--aD~RavLIKLADRLhNM 359 (657)
.++. .+.+.++.+.... ..+.+.+||.||+|.-+
T Consensus 109 --~Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 --MVPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp --TSCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred --hCCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1111 1234455544433 24678999999999877
No 13
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=74.09 E-value=3.2 Score=42.23 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcccc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDTLD 286 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D-~~tIaAALLHDvVE 286 (657)
.|.+|++.-.......-.....|-+.|.+..|+....-|.| .-.+.||||||.=.
T Consensus 37 ti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLGk 92 (250)
T 2ibn_A 37 TVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGK 92 (250)
T ss_dssp CHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccHh
Confidence 36666665444433332223467789999999999888998 55559999999743
No 14
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=62.48 E-value=5.9 Score=37.97 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhccccc
Q 006186 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 254 PYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVED 287 (657)
..+.|.+.||.+.. .+|.|.+ ...||||||+=.-
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~ 64 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE 64 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCc
Confidence 35789999997643 4678754 5689999998654
No 15
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=59.86 E-value=15 Score=36.27 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=53.0
Q ss_pred CcchhHHHHHHHHHHHHh---CCCH-HHHHHHHhhccccc--ccCCHH-----HHHHHhcHHHHHHHHHhhcccccchhH
Q 006186 252 GDPYLLHCVETAMLLAAI---GANS-TVVAAGLLHDTLDD--AFLSYD-----YIFRTFGAGVADLVEGVSKLSQLSKLA 320 (657)
Q Consensus 252 GePYI~Hpl~VA~ILael---g~D~-~tIaAALLHDvVED--T~vT~e-----eI~~~FG~eVA~LV~gVTKl~~l~~l~ 320 (657)
.+.--.|-+.||.+..-+ ++|. .++..||+||+.|- +++|.- +..... +- ..++.+. ..++
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~k~~~~~~k~~~--E~-~A~~~l~--~~LP--- 114 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRR--EE-EAMKQIT--QLLP--- 114 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGGGCCCHHHHHHH--HH-HHHHHHH--TTSC---
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccccccchhhhHHH--HH-HHHHHHH--HhCC---
Confidence 366678999999775433 4675 67889999999996 234321 111000 00 1111111 1111
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCceeehhhhhhhhhhcc
Q 006186 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (657)
Q Consensus 321 r~~~~~~k~~qaE~lRkmLLAm---aD~RavLIKLADRLhNMR 360 (657)
..+.+.++.++..+ ..+.+.+||-||+|.-+-
T Consensus 115 --------~~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 115 --------EDLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 12234555555443 367899999999998764
No 16
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=59.32 E-value=7.3 Score=37.01 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHH----HhCCCH-HHHHHHHhhccccc
Q 006186 255 YLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 255 YI~Hpl~VA~ILa----elg~D~-~tIaAALLHDvVED 287 (657)
.+.|.+.||.+.. .+|+|. ....||||||+=.-
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~ 57 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 4789999997643 457875 45689999998653
No 17
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=59.04 E-value=7.4 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHH----HhCCCH-HHHHHHHhhccccc
Q 006186 254 PYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 254 PYI~Hpl~VA~ILa----elg~D~-~tIaAALLHDvVED 287 (657)
..+.|.+.||.+.. .+|+|. ....||||||+=.-
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~ 56 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKF 56 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 45789999997643 467875 45689999998654
No 18
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=57.55 E-value=23 Score=34.74 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhc--CCcccc-------CcchhHHHHHHHHHH---HHh---CCCH-HHHHHHHhhccccc
Q 006186 232 FVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLL---AAI---GANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 232 ll~kA~~~A~~aH~--GQ~Rks-------GePYI~Hpl~VA~IL---ael---g~D~-~tIaAALLHDvVED 287 (657)
.+.+-+.|-..+++ -+.|.+ .+.--.|-+.||.+. ++. ++|. .++..||+||+.|-
T Consensus 9 ~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~ 80 (200)
T 3kh1_A 9 RLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEI 80 (200)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHH
Confidence 45555666555543 333422 245668999999763 332 3675 68889999999995
No 19
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=56.55 E-value=9.1 Score=36.39 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHHH---HH------hCCCHH-HHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~IL---ae------lg~D~~-tIaAALLHDvVED 287 (657)
+.-..|-+.||.+. +. -+.|.. ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 55678999998764 43 467766 6889999999864
No 20
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=55.83 E-value=8.1 Score=41.43 Aligned_cols=33 Identities=33% Similarity=0.350 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHH----HhCCCHH-HHHHHHhhcccc
Q 006186 254 PYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (657)
Q Consensus 254 PYI~Hpl~VA~ILa----elg~D~~-tIaAALLHDvVE 286 (657)
.-++|.++||.+.. .+|++++ +-+||||||+=-
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh 112 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGH 112 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 44799999998643 6788865 458899999874
No 21
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=49.62 E-value=78 Score=31.55 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=25.0
Q ss_pred cchhHHHHHHHHHHH----HhCCCH-HHHHHHHhhccc
Q 006186 253 DPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTL 285 (657)
Q Consensus 253 ePYI~Hpl~VA~ILa----elg~D~-~tIaAALLHDvV 285 (657)
..++.|.+.||.+.. .+|.+. +...||||||+=
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiG 141 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIG 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 468899999997644 446665 467999999974
No 22
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=48.50 E-value=62 Score=31.92 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=25.9
Q ss_pred CcchhHHHHHHHHH---HHH----hC--CCH-HHHHHHHhhccccc
Q 006186 252 GDPYLLHCVETAML---LAA----IG--ANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 252 GePYI~Hpl~VA~I---Lae----lg--~D~-~tIaAALLHDvVED 287 (657)
.+.--.|-+.||.+ |+. .| +|. .++..||+||+.|-
T Consensus 28 ~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~ 73 (216)
T 3mzo_A 28 EHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSEL 73 (216)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHH
Confidence 35667899999875 332 23 564 57889999999995
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=43.85 E-value=14 Score=39.33 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHHHH----HhCCCH--HHHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~ILa----elg~D~--~tIaAALLHDvVED 287 (657)
...+.|.+.||.+.. .+|.|. .+.+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 456899999997543 567775 57799999998764
No 24
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=42.86 E-value=41 Score=36.23 Aligned_cols=183 Identities=15% Similarity=0.211 Sum_probs=103.7
Q ss_pred CHHHHHHHHhhccccccc---CCHHHHH---HHhcHHHHHHHHHhh-cccccchhHhhccccchHHHHHHHHHHHh---h
Q 006186 272 NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (657)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVT-Kl~~l~~l~r~~~~~~k~~qaE~lRkmLL---A 341 (657)
|+.+++|.-|..++.... ++.+|++ +...++-..||+.+. +.-.+.. -.+-||++|- .
T Consensus 180 d~~tViaTHLsevi~~~a~ellg~qEvq~LLd~L~~~~p~LVeEl~p~~l~l~~------------i~~VLq~LL~E~Vs 247 (389)
T 3a5i_A 180 EASTVVATHLNHLIGQFSAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTT------------LHKVLQNLLAEKVP 247 (389)
T ss_dssp EHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHTTCHHHHHTTTTTTSCHHH------------HHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhccCCcCHHH------------HHHHHHHHHhCCCC
Confidence 666666666666666542 4555433 334555556777664 3222221 2345666552 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhh-
Q 006186 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC- 420 (657)
Q Consensus 342 maD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~- 420 (657)
+.|.|.++=-|||--..-+....+.+.-|+++++..-.-|++-...|-+..|--+||++- .+.++..
T Consensus 248 IRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l------------~~si~qt~ 315 (389)
T 3a5i_A 248 IRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLL------------LQALQGGG 315 (389)
T ss_dssp CCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHHSCTTCCEECBCCCTTHHHHH------------HHHHHSSS
T ss_pred cccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHcCCCCeEEEEEeCHHHHHHH------------HHHhcccC
Confidence 458888888899888776766667777888888866666665555566666666666643 3333322
Q ss_pred -hhhhhHHHHHHHHHHHHH---hcCcceecccccccChHHHHHHHhhCCC------CccccccceEEEEE
Q 006186 421 -FDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (657)
Q Consensus 421 -~re~~i~~v~~~L~~~L~---~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~GiRII 480 (657)
-.-...+.+++.+++.++ ..|....-++. -.+=...+||.++.. ++.||.+=.-++++
T Consensus 316 GL~P~~~~~l~~~l~~~~~~~~~~g~~pVLL~s--~~iR~~lr~lle~~~p~l~VLS~~EI~~~~~I~~v 383 (389)
T 3a5i_A 316 GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVN--HALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMT 383 (389)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEEC--TTTHHHHHHHHTTTCTTCEEEETTTSCTTCCEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeC--HHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEEE
Confidence 122234445555554443 33443222332 233356777777654 46888776666643
No 25
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=39.67 E-value=23 Score=34.99 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHHHHh--CCCHHHHHHHHhhccccc
Q 006186 253 DPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~ILael--g~D~~tIaAALLHDvVED 287 (657)
+.--.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 55668999999876533 567889999999999885
No 26
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=38.78 E-value=47 Score=35.70 Aligned_cols=190 Identities=12% Similarity=0.159 Sum_probs=109.4
Q ss_pred CCHHHHHHHHhhccccccc---CCHHHHHH---HhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHh---h
Q 006186 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (657)
Q Consensus 271 ~D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLL---A 341 (657)
.|+.+++|.-|..++.... ++.+|++. ...++-..||+.+.+.-.+. .-.+-||++|- .
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~------------~i~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQ------------RISEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHH------------HHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHH------------HHHHHHHHHHhCCCC
Confidence 4888888888888887653 56665443 34455556777664322221 12345666552 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCchhhHHHHHHHhhh
Q 006186 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF 421 (657)
Q Consensus 342 maD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~Y~~i~~~L~~~~ 421 (657)
+.|.|.++=-|||--..-+....+.+.-|+++++....-|++= ..|-+..|--+||++-...+....--. .+. -
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si~~t~~g~---~la--L 314 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGIRQTSGGS---FLN--M 314 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTEECC---------C--C
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHhcccCCCC---ccC--C
Confidence 4488888888888877666666677777888888755555554 567777888899987655544321000 000 0
Q ss_pred hhhhHHHHHHHHHHHHH---hcCcceecccccccChHHHHHHHhhCCC------CccccccceEEEEE
Q 006186 422 DEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (657)
Q Consensus 422 re~~i~~v~~~L~~~L~---~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~GiRII 480 (657)
.....+.+++.+++.++ ..|....-++.- .+=...+||.++.. ++.||.+=.-++++
T Consensus 315 ~P~~~~~l~~~l~~~~~~~~~~g~~pVLLts~--~iR~~lrrlle~~~p~l~VLS~~EI~~~~~i~~v 380 (383)
T 4a5p_A 315 DIEVSDEVMETLAHALRELRNAXXNFVLLVSV--DIRRFVXRLIDNRFXSILVISYAEIDEAYTINVL 380 (383)
T ss_dssp EECCCHHHHHHHHHHHHHHHSSSCCCEEEECT--TTHHHHHHHHHTTCSSSCEEETTSCCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCeEEEcCH--HHHHHHHHHHHHhcCCceEEeHHHcCCCCceEEE
Confidence 11223344444444443 235433223332 13346677777654 47888887777765
No 27
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=37.08 E-value=38 Score=35.08 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCC-HHHHHHHHhhcc
Q 006186 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (657)
Q Consensus 232 ll~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILaelg~D-~~tIaAALLHDv 284 (657)
.|.+|+++-.......-.....|-|.|++.+|+....-|-+ .=...+||+||.
T Consensus 76 tIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 76 TIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp CHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred cHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 47777766555544443345678999999999999987877 446678999997
No 28
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=32.91 E-value=5.1 Score=33.66 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcccceeccccceeceeeeee
Q 006186 602 TFPSHADDCPFSYKPQCSHDGPVFVIMIENDKVSFKYHFQCYVSMKWKYMC 652 (657)
Q Consensus 602 lFP~h~~dc~y~ftp~~~~~g~~~~i~~~~~~~sv~El~~~~~~~~~~~~~ 652 (657)
+|+ |.+|+|+|+ | ++.|||+..-..+++|..
T Consensus 3 l~~----~~i~v~tP~----G------------~~~~lp~GaT~~D~A~~I 33 (78)
T 3hvz_A 3 LAP----EEVFVFTPK----G------------DVISLPIGSTVIDFAYAI 33 (78)
T ss_dssp -------CEEEEECTT----S------------CEEEEETTCBHHHHHHHH
T ss_pred CcC----ceEEEECCC----C------------CEEEecCCCCHHHHHHHh
Confidence 677 899999998 6 677788888888887754
No 29
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=32.20 E-value=74 Score=30.43 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHH---HHH-hCCCH----HHHHHHHhhccccc
Q 006186 253 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~I---Lae-lg~D~----~tIaAALLHDvVED 287 (657)
+.--.|-..||.+ |+. .|+|. .++..||+||+.|-
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~ 79 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEA 79 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHh
Confidence 5566899999987 665 46776 45778999999884
No 30
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=30.74 E-value=41 Score=32.35 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHH---HHH------hCCCHH-HHHHHHhhccccc
Q 006186 253 DPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLDD 287 (657)
Q Consensus 253 ePYI~Hpl~VA~I---Lae------lg~D~~-tIaAALLHDvVED 287 (657)
+.-..|-+.||.+ |+. .++|.+ ++..||+||+.|-
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~ 80 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEA 80 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHh
Confidence 5567899999874 454 367875 7889999999885
No 31
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.21 E-value=20 Score=38.79 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHH----hC-----CC----HHHHHHHHhhcccc
Q 006186 254 PYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTLD 286 (657)
Q Consensus 254 PYI~Hpl~VA~ILae----lg-----~D----~~tIaAALLHDvVE 286 (657)
.-+.|.++|+.+... ++ ++ ..+.+||||||+=-
T Consensus 55 tRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiGh 100 (410)
T 2q14_A 55 TRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGH 100 (410)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTC
T ss_pred CeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC
Confidence 568999999986543 33 23 34679999999843
No 32
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=29.44 E-value=8.8 Score=27.22 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhhhhhhhccccccC
Q 006186 158 NGFVRNALGSCVDYD 172 (657)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (657)
.|||||+-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 699999999998543
No 33
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=27.96 E-value=37 Score=35.08 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=24.4
Q ss_pred cCcchh-HHHHHHHHHHH----HhCCCH----H-HHHHHHhhccc
Q 006186 251 SGDPYL-LHCVETAMLLA----AIGANS----T-VVAAGLLHDTL 285 (657)
Q Consensus 251 sGePYI-~Hpl~VA~ILa----elg~D~----~-tIaAALLHDvV 285 (657)
...+|. .|.+.||.+.. .+|++. . ...||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 344554 79999997643 457764 3 45699999984
No 34
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=27.67 E-value=33 Score=34.27 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHh----CCCH-HHHHHHHhhccccc
Q 006186 256 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 287 (657)
Q Consensus 256 I~Hpl~VA~ILael----g~D~-~tIaAALLHDvVED 287 (657)
+.|.++|+.....+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 68999999876654 4454 56789999999764
No 35
>2x49_A INVA, invasion protein INVA; protein transport, transport, pathogenesis; 1.50A {Salmonella enterica subsp} PDB: 2x4a_A* 3lw9_A
Probab=27.52 E-value=96 Score=32.60 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=108.5
Q ss_pred CHHHHHHHHhhccccccc---CCHHHHHH---HhcHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHh---hc
Q 006186 272 NSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFL---AM 342 (657)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~~---~FG~eVA~LV~gVTKl~~l~~l~r~~~~~~k~~qaE~lRkmLL---Am 342 (657)
|+.+++|.-|..++.... ++.+|++. ...++-.+||+.+-+.-.+. .-.+-||++|- .+
T Consensus 124 d~~tViatHl~evi~~~a~ellg~qEvq~Lld~l~~~~p~LveElp~~l~l~------------~i~~VLq~LL~E~VsI 191 (333)
T 2x49_A 124 NALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQ------------RISEVLQRLLSERVSV 191 (333)
T ss_dssp EHHHHHHHHHHHHHHHTGGGTCSHHHHHHHHHHHHTTCHHHHHHHHTTSCHH------------HHHHHHHHHHTTTCCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHHhccCCHH------------HHHHHHHHHHhCCCCc
Confidence 666666666666665542 45544333 34455556666663322221 12345666552 33
Q ss_pred cCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCc---hhhHHHHHHHh
Q 006186 343 ADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD---QHTELSSKLVE 419 (657)
Q Consensus 343 aD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~---~Y~~i~~~L~~ 419 (657)
.|.|.++=-|||--..-++...+.+.-|+++++..-.-|++-.+ |-+..+--++|++-..-+... .|-.+
T Consensus 192 Rdl~tIlEaLae~a~~~kD~~~LtE~VR~aL~r~I~~~~~~~~~-L~vi~L~p~lE~~l~~~i~~t~~G~~l~L------ 264 (333)
T 2x49_A 192 RNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGGE-LRAVMVSAEVEDVIRKGIRQTSGSTFLSL------ 264 (333)
T ss_dssp CCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHHTTSC-EEEEECCHHHHHHHHHHEEECSSCEEECC------
T ss_pred ccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCC-ceEEEeCHHHHHHHHHHHhccCCCCcccC------
Confidence 48888888888887766666667777888888876666776556 888888888888544322211 01000
Q ss_pred hhhhhhHHHHHHHHHHHHHh---cCcceecccccccChHHHHHHHhhCCC------CccccccceEEEEE
Q 006186 420 CFDEAMVTSAIEKLEQALKD---KNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRLI 480 (657)
Q Consensus 420 ~~re~~i~~v~~~L~~~L~~---~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~GiRII 480 (657)
.-+..+.+++.+++.+++ .|....-++ .-.+=...+||.++.. ++.||.+=.-++++
T Consensus 265 --~P~~~~~l~~~~~~~~~~~~~~g~~pvLl~--s~~iR~~lr~lie~~~p~l~VLS~~EI~~~~~i~~v 330 (333)
T 2x49_A 265 --DPEASANLMDLITLKLDDLLIAHKDLVLLT--SVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVI 330 (333)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCSCGGGCEEEE--CTTTHHHHHHHHTTTCTTCEEEETGGGTTCCCEEEE
T ss_pred --CHHHHHHHHHHHHHHHHHHHhcCCCeEEEc--CHHHHHHHHHHHHHHCCCCEEEehHhcCCCCeeEEE
Confidence 223456677777777753 233222122 1223346777777654 46888887777765
No 36
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=27.44 E-value=24 Score=39.10 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHH----hC------------CCH----HHHHHHHhhccc
Q 006186 255 YLLHCVETAMLLAA----IG------------ANS----TVVAAGLLHDTL 285 (657)
Q Consensus 255 YI~Hpl~VA~ILae----lg------------~D~----~tIaAALLHDvV 285 (657)
-+.|.++|+.+... ++ .+. .+.+||||||+=
T Consensus 87 Rf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 87 RFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 48999999976532 21 222 256999999984
No 37
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=25.30 E-value=28 Score=39.06 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=22.3
Q ss_pred chhHHHHHHHHHHHHh-----------CCCH----HHHHHHHhhcccc
Q 006186 254 PYLLHCVETAMLLAAI-----------GANS----TVVAAGLLHDTLD 286 (657)
Q Consensus 254 PYI~Hpl~VA~ILael-----------g~D~----~tIaAALLHDvVE 286 (657)
--+.|.++|+.+...+ +.+. .+.+||||||+=-
T Consensus 65 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiGH 112 (528)
T 3u1n_A 65 NRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLGH 112 (528)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccCC
Confidence 3489999999765432 2222 2568999999843
No 38
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.38 E-value=49 Score=32.42 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHhhhhhccC--CchhhHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCcc----e--ecccc----cccChHHHHHHH
Q 006186 395 VQLENLCFKHLN--PDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNIS----F--LVLCG----RHKSLYSIHCKM 461 (657)
Q Consensus 395 ~ELEDLsFk~L~--P~~Y~~i~~~L~~~~-re~~i~~v~~~L~~~L~~~gI~----~--~~V~g----R~Ks~ySI~~Km 461 (657)
.++.+.|+++|- +..-.+|.++|.... .++.|+.+++.| .+.|.- + ..|.. +-+.+.-|..+|
T Consensus 61 ~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L----~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL 136 (221)
T 3d5l_A 61 AKAYSRMLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKL----RGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHL 136 (221)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHH----HHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344555666665 334467777777653 444555555544 444431 0 01333 457888999999
Q ss_pred hhCCCCccccccceEEEEEECChHHHHHHHHHHHhhcCCC
Q 006186 462 LKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEV 501 (657)
Q Consensus 462 ~rk~~~~~eI~Dl~GiRIIv~~~~DCY~vlgiIh~l~~pi 501 (657)
.+||.+-+.|...+.- ++..+..-.+..++...|.+.
T Consensus 137 ~~KGI~~~~I~~al~~---~~~~~e~e~a~~l~~Kk~~~~ 173 (221)
T 3d5l_A 137 RQKGIGESDIDDALTQ---FTPEVQAELAKKLALKLFRRY 173 (221)
T ss_dssp HHTTCCHHHHHHHGGG---CCHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhc
Confidence 9999985444332210 022344556677788777653
No 39
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=21.38 E-value=52 Score=32.22 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=31.3
Q ss_pred HHHHHHHHhCC---CHHHHHHHHhhcccccccCCHHHHHHHhcHHH
Q 006186 261 ETAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (657)
Q Consensus 261 ~VA~ILaelg~---D~~tIaAALLHDvVEDT~vT~eeI~~~FG~eV 303 (657)
.|+.+|+++|. |.+.++ |++++.....+++|.+.||+++
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 35678888885 666655 7888888889999999999885
No 40
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=20.65 E-value=1.5e+02 Score=31.66 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=100.9
Q ss_pred CHHHHHHHHhhccccccc---CCHHHHH---HHhcHHHHHHHHHhh-cccccchhHhhccccchHHHHHHHHHHHh---h
Q 006186 272 NSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVS-KLSQLSKLARENNTASKTVEADRLHTMFL---A 341 (657)
Q Consensus 272 D~~tIaAALLHDvVEDT~---vT~eeI~---~~FG~eVA~LV~gVT-Kl~~l~~l~r~~~~~~k~~qaE~lRkmLL---A 341 (657)
|+.+++|.-|..++.... ++.++++ +....+-..||+.+. +.-.+. .-.+-||++|- .
T Consensus 169 d~~tViaTHLsevi~~~a~ellg~qEvq~LLd~l~~~~P~LVeEl~p~~l~l~------------~i~~VLq~LL~E~Vs 236 (382)
T 3mix_A 169 DPASVVSTHITEKIKQHAHELIGRQETKQLIDHLKESYPVLVEEVTPNPLSVG------------DIQKVLAKLLKEKVS 236 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHTTTTCCHH------------HHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHHChHHHHHhcccCCCHH------------HHHHHHHHHHhCCCC
Confidence 666666666666665432 4444433 334555566777663 211121 12344566552 3
Q ss_pred ccCceeehhhhhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhccChhhHHHHHHhhhhhccCCch---hhHHHHHHH
Q 006186 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQ---HTELSSKLV 418 (657)
Q Consensus 342 maD~RavLIKLADRLhNMRtL~~lp~ekq~riA~ETleIYAPLA~RLGi~~lK~ELEDLsFk~L~P~~---Y~~i~~~L~ 418 (657)
+.|.|.++=-|||--..-++...+.+.-|+++++....-|++--+.|-+..|--+||++-...+.+.. |-.+
T Consensus 237 IRdlrtIlEaLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~~~~L~vi~L~p~lE~~l~~si~~~~~g~~laL----- 311 (382)
T 3mix_A 237 IRNLVTIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGNYLSL----- 311 (382)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCCTTSCEECBEECHHHHHHHHHHBC------CBCC-----
T ss_pred cccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEeCHHHHHHHHHHhhccCCCCccCC-----
Confidence 45888888888887766666666677778888876555555544457777888888887655444221 1111
Q ss_pred hhhhhhhHHHHHHHHHHHHH---hcCcceecccccccChHHHHHHHhhCCC------CccccccceEEEE
Q 006186 419 ECFDEAMVTSAIEKLEQALK---DKNISFLVLCGRHKSLYSIHCKMLKKKL------TMDEIHDIYGLRL 479 (657)
Q Consensus 419 ~~~re~~i~~v~~~L~~~L~---~~gI~~~~V~gR~Ks~ySI~~Km~rk~~------~~~eI~Dl~GiRI 479 (657)
.....+.+++.+++.++ ..|....-++.-. +=...+||.++.. ++.||.+=.-+++
T Consensus 312 ---~P~~~~~l~~~l~~~~~~~~~~g~~pVLL~s~~--iR~~lr~lie~~~p~l~VLS~~EI~~~~~i~~ 376 (382)
T 3mix_A 312 ---EPDISESIVRSVAKEAEQLSLRQETAILLCSPP--VRMYVKQLLERYFPDLPVLSYNELEANVEVQS 376 (382)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECHH--HHHHHHHHHTTTCTTCCEEEGGGSCTTCCEEC
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeCHH--HHHHHHHHHHHhCCCCEEEeHHhcCCCCceEE
Confidence 11233444444444443 2344322132211 2245667776653 3678877666654
Done!