Your job contains 1 sequence.
>006188
MQGQRGTIGSLPETLSFDHGSTSTSAVDQQMFWNNMRNPPESRPPDNMLSPAGTRTTMTY
VNSMSHEQQMSTAWSLGEPSSHGPQNKVTHDERRTQHGWQCEPTSSMPVDGANVNPMLVQ
SSNSNMMSQNLNLNAGSGGYLAEENNGRPGSSSEGGRRASCKRKALEGNVENSSVGGTSS
YFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAGNAERS
RRNYRVRINPSNQQKVMPYAQFPTNAAVRHSSISSTQESSRLPPNDQSLDSMAAPSVENT
GPQSQPVLLHVPMFPQNLQPFRWDKGSSSRSGSSSSSNGARDRDVQREEARPRIMGRNIL
ENPMFIPAPDLRNLVRSPANRSLAGGNISTPGNVASSSRAGSSSGVHPPSAPTWVPHPNP
YQYPRRFSELIRRSLTSSSGSESAGQSSNQTPPHSVPLSPEEMVLSSGAGNQRHHPSYPR
SASRLERQDGVLGFPHPLRALAAVGEGRNRVLVSEIRNVLDLMRRGEGLQFEDVMILDQS
VFFGVADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLG
SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006188
(657 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160031 - symbol:AT5G42940 species:3702 "Arabi... 871 1.4e-101 2
TAIR|locus:2028225 - symbol:AT1G45180 species:3702 "Arabi... 641 1.1e-78 2
TAIR|locus:2124271 - symbol:MBR2 "MED25 BINDING RING-H2 P... 701 8.5e-77 2
TAIR|locus:2125284 - symbol:AT4G31450 species:3702 "Arabi... 321 1.8e-26 1
TAIR|locus:2149378 - symbol:AT5G24870 species:3702 "Arabi... 305 1.8e-24 1
TAIR|locus:2159634 - symbol:AT5G10650 species:3702 "Arabi... 287 2.1e-22 1
TAIR|locus:2027804 - symbol:AT1G73760 species:3702 "Arabi... 263 4.0e-22 2
TAIR|locus:2009660 - symbol:AT1G53190 species:3702 "Arabi... 260 2.9e-20 2
TAIR|locus:2030933 - symbol:AT1G17970 species:3702 "Arabi... 238 1.5e-17 1
TAIR|locus:2086305 - symbol:AT3G15070 species:3702 "Arabi... 238 1.7e-16 2
TAIR|locus:2155513 - symbol:AT5G67120 species:3702 "Arabi... 172 1.7e-10 1
TAIR|locus:2092271 - symbol:AT3G19910 species:3702 "Arabi... 171 6.2e-10 1
TAIR|locus:504955576 - symbol:BB "BIG BROTHER" species:37... 147 2.1e-08 2
UNIPROTKB|E2R7H1 - symbol:RNF111 "Uncharacterized protein... 130 2.3e-08 3
UNIPROTKB|F1S053 - symbol:RNF111 "Uncharacterized protein... 96 2.4e-08 3
UNIPROTKB|Q5R476 - symbol:RNF111 "E3 ubiquitin-protein li... 130 8.2e-08 2
MGI|MGI:1934919 - symbol:Rnf111 "ring finger 111" species... 96 1.9e-07 3
UNIPROTKB|A6QLE0 - symbol:RNF111 "Uncharacterized protein... 96 1.9e-07 3
ZFIN|ZDB-GENE-081104-369 - symbol:rnf165b "ring finger pr... 140 2.3e-07 2
UNIPROTKB|Q6ZNA4 - symbol:RNF111 "E3 ubiquitin-protein li... 96 2.4e-07 3
TAIR|locus:2203063 - symbol:AT1G36950 species:3702 "Arabi... 141 3.3e-07 1
TAIR|locus:2075641 - symbol:AT3G47180 species:3702 "Arabi... 137 6.3e-07 1
MGI|MGI:2444521 - symbol:Rnf165 "ring finger protein 165"... 143 9.1e-07 1
RGD|1560744 - symbol:Rnf165 "ring finger protein 165" spe... 143 9.1e-07 1
RGD|1310097 - symbol:Rnf111 "ring finger protein 111" spe... 96 1.2e-06 3
TAIR|locus:2126906 - symbol:AT4G00070 species:3702 "Arabi... 128 1.2e-06 1
TAIR|locus:2145086 - symbol:AT5G52140 species:3702 "Arabi... 138 1.9e-06 1
ZFIN|ZDB-GENE-091118-64 - symbol:rnf165a "ring finger pro... 139 1.9e-06 1
UNIPROTKB|F1RPS5 - symbol:RNF165 "Uncharacterized protein... 139 2.2e-06 1
UNIPROTKB|I3LPH2 - symbol:RNF165 "Uncharacterized protein... 139 2.2e-06 1
UNIPROTKB|Q6ZSG1 - symbol:RNF165 "RING finger protein 165... 139 2.5e-06 1
UNIPROTKB|F1PHU2 - symbol:RNF165 "Uncharacterized protein... 139 2.5e-06 1
UNIPROTKB|F1MJP2 - symbol:RNF165 "Uncharacterized protein... 139 2.6e-06 1
UNIPROTKB|F1P2A5 - symbol:RNF111 "Uncharacterized protein... 134 4.2e-06 2
UNIPROTKB|E1BSQ8 - symbol:RNF111 "Uncharacterized protein... 96 1.1e-05 3
UNIPROTKB|F1NRC6 - symbol:RLIM "Uncharacterized protein" ... 116 1.1e-05 3
UNIPROTKB|Q7L0R7 - symbol:RNF44 "RING finger protein 44" ... 127 4.5e-05 2
UNIPROTKB|B4DYE0 - symbol:RNF44 "cDNA FLJ61466, highly si... 127 5.5e-05 1
ZFIN|ZDB-GENE-030131-8693 - symbol:si:dkey-20n3.1 "si:dke... 124 6.2e-05 3
FB|FBgn0037705 - symbol:mura "murashka" species:7227 "Dro... 116 7.7e-05 3
UNIPROTKB|F1S3A0 - symbol:RNF44 "Uncharacterized protein"... 125 7.7e-05 2
UNIPROTKB|F1P629 - symbol:RNF44 "Uncharacterized protein"... 127 8.3e-05 1
UNIPROTKB|E2RSZ0 - symbol:RLIM "Uncharacterized protein" ... 116 0.00011 3
UNIPROTKB|Q9NVW2 - symbol:RLIM "E3 ubiquitin-protein liga... 116 0.00012 2
UNIPROTKB|F1N0G7 - symbol:RNF44 "Uncharacterized protein"... 125 0.00012 2
UNIPROTKB|I3LB70 - symbol:LOC100738472 "Uncharacterized p... 116 0.00025 2
RGD|1307212 - symbol:Rnf44 "ring finger protein 44" speci... 121 0.00025 1
UNIPROTKB|Q4V7B8 - symbol:Rnf44 "RING finger protein 44" ... 121 0.00025 1
ZFIN|ZDB-GENE-060929-604 - symbol:rnf44 "ring finger prot... 128 0.00026 2
UNIPROTKB|F1RPK6 - symbol:LOC100738472 "Uncharacterized p... 116 0.00030 2
MGI|MGI:2145310 - symbol:Rnf44 "ring finger protein 44" s... 121 0.00033 1
MGI|MGI:1342291 - symbol:Rlim "ring finger protein, LIM d... 118 0.00044 3
UNIPROTKB|E1BBI7 - symbol:RLIM "Uncharacterized protein" ... 116 0.00046 2
TAIR|locus:2139044 - symbol:AT4G12190 species:3702 "Arabi... 97 0.00052 1
WB|WBGene00021842 - symbol:Y54E10BR.3 species:6239 "Caeno... 117 0.00053 1
UNIPROTKB|D4A8S6 - symbol:Rlim "Protein Rlim" species:101... 118 0.00067 2
RGD|1559832 - symbol:Rlim "ring finger protein, LIM domai... 118 0.00069 2
UNIPROTKB|Q5XIX1 - symbol:Rnf38 "Rnf38 protein" species:1... 118 0.00070 3
MGI|MGI:1920719 - symbol:Rnf38 "ring finger protein 38" s... 118 0.00092 2
UNIPROTKB|F1LNX1 - symbol:Rnf38 "Protein Rnf38" species:1... 118 0.00095 3
>TAIR|locus:2160031 [details] [associations]
symbol:AT5G42940 species:3702 "Arabidopsis thaliana"
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AB008264 HSSP:Q9LRB7
eggNOG:NOG291583 HOGENOM:HOG000241085 EMBL:AF462851 EMBL:BT004548
EMBL:AK319077 IPI:IPI00537347 RefSeq:NP_199108.1 UniGene:At.6527
ProteinModelPortal:Q9FMM4 SMR:Q9FMM4 IntAct:Q9FMM4 PRIDE:Q9FMM4
EnsemblPlants:AT5G42940.1 GeneID:834306 KEGG:ath:AT5G42940
TAIR:At5g42940 InParanoid:Q9FMM4 OMA:YMIANSE PhylomeDB:Q9FMM4
ProtClustDB:CLSN2681891 Genevestigator:Q9FMM4 Uniprot:Q9FMM4
Length = 691
Score = 871 (311.7 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
Identities = 216/516 (41%), Positives = 283/516 (54%)
Query: 159 ASCKRKALEGNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSG-RG 217
ASCKRKALEG++ SS GG FQ ESS+ S + G+ L+IS G +++G RG
Sbjct: 179 ASCKRKALEGSISQSSSGGYHD-FQRGESSSWTPGSTVFRPGNGLNIS---GSLDNGPRG 234
Query: 218 LGVRGPVRD---GLPEWPVAGNAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRHSSIS 274
+ V G V + P +PV+ AE S RN VR NPS+ Q+ + + F VR
Sbjct: 235 M-VSGTVPNFPVSAPNFPVSAIAESSSRNICVRSNPSDHQETVNPSTFAAGTVVRRPVPP 293
Query: 275 STQESSR-LPPNDQSLDSMAAPS-VENTGPQSQPVLLHVPMFPQNLQPFRWDKXXXXXXX 332
S SR LP + SLD S V + P S PV + P L PFRW
Sbjct: 294 SQLNLSRHLPADQHSLDLRPGQSFVVSRNPNSTPVSIP-PGSRTMLPPFRW--TGSSLVG 350
Query: 333 XXXXXNGARDRDVQREEARPRIMGRNILENPMFIPAPDLRNLVRSPANRSLAGGNISTPG 392
+R++ +E R R + N LE PMF AP++ N RS ++R++ GN+++
Sbjct: 351 GTSNSTAPVERNLHLDETRSRSIPGNTLEIPMFA-APEVGNFARSQSSRNVTNGNLNSAS 409
Query: 393 NVXXXXXXXXXXXVHPPSAP-TWVPHPNPYQYPRRF---SELIRRXXXXXXXXXXXXXXX 448
+V PPS+ W + N Y RR SEL RR
Sbjct: 410 SVSRTGSTTSVPPPPPPSSNLAWTSYQNSPHYQRRRTERSELARRSLLSSLAADATNQRS 469
Query: 449 NQTPP-HSV--PLSPEEMVLSSGAGN-QRHHPSYPRSASRLERQ-DGVLGFPHPLRALAA 503
P S+ P S + +VL G N Q H+ +Y R+ +RQ D V+G PHPLRALAA
Sbjct: 470 GDHPTLRSLAPPASSDGLVLQPGGDNSQMHNRAYSRAGPLFDRQGDSVVGIPHPLRALAA 529
Query: 504 VGEGRNRVLVSEIRNVLDLMRR---GEGLQFEDVMILDQSVFFGVADINDRHRDMRLDVD 560
GR+R++VS+++NVLD+MRR L+ EDVM+L+ SV F A +DR+RDMRLDVD
Sbjct: 530 ASRGRSRLMVSQMQNVLDVMRRDANNNNLRLEDVMLLNHSVLFDGATGHDRYRDMRLDVD 589
Query: 561 NMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGED 620
NMSYEELLALEERIG+V TG+ EETI NRLKQ+KY + S Y +GED
Sbjct: 590 NMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEYTEGED 649
Query: 621 TGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 656
G L CGH+FH+ CIK+WL KNLCPICKTT L+T+
Sbjct: 650 MGTLECGHEFHSQCIKEWLKQKNLCPICKTTGLNTA 685
Score = 156 (60.0 bits), Expect = 1.4e-101, Sum P(2) = 1.4e-101
Identities = 35/97 (36%), Positives = 62/97 (63%)
Query: 1 MQGQRGTIGSLPETLSFDHGSTSTSAVDQQMFWNNMRNPPESRPPDNMLSPAGTRTTMTY 60
MQG+R ++G L E L+F+HGS+S++ V W N+ + ++ D M++ + + T++
Sbjct: 1 MQGERASLGYLSEALNFEHGSSSSNGVIDH--WENIHSLGDNDLQDYMIANSESNTSLA- 57
Query: 61 VNSMSHEQQMSTAWSLGEPSSHGPQNKVT-HDERRTQ 96
NS+ HEQQ +SLGE SS G +++ + H+E+R +
Sbjct: 58 -NSVYHEQQGLRRFSLGEASSSGTKDEASSHNEQRME 93
>TAIR|locus:2028225 [details] [associations]
symbol:AT1G45180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC007915
HOGENOM:HOG000241085 ProtClustDB:CLSN2681891 IPI:IPI00535770
RefSeq:NP_175132.1 UniGene:At.38723 ProteinModelPortal:Q9MAJ1
SMR:Q9MAJ1 EnsemblPlants:AT1G45180.1 GeneID:841086
KEGG:ath:AT1G45180 TAIR:At1g45180 eggNOG:NOG247923
InParanoid:Q9MAJ1 OMA:HISRNAS PhylomeDB:Q9MAJ1
Genevestigator:Q9MAJ1 Uniprot:Q9MAJ1
Length = 645
Score = 641 (230.7 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 163/402 (40%), Positives = 211/402 (52%)
Query: 263 PTNAAVRHSSISSTQESSRLPPNDQSLDSMA-APSVENTGPQSQPV-LLHVPMFPQNLQP 320
PT S+ + + S L P D SM ++ N Q+ H+P P +
Sbjct: 261 PTYQQETVSNFAPSLNSPGLIPADHQQISMRYGHALGNFASQNPNAPATHMP--PVSRNT 318
Query: 321 FRWDKXXXXXXXXXXXXNGARDRDV-QREEARPRIMGRNILENPMFIPAPDLRNLVRSPA 379
F+W+ DR+V R R R N LE P+F+PAP+LRN+
Sbjct: 319 FQWNTSPVAAVISSSSATPV-DRNVIHRNATRQR---SNTLEIPLFVPAPELRNVAHGHI 374
Query: 380 NRSLAGGNISTPGNVXXXXXXXXXXXVHP-PSAPTWVPHPNPYQY-PRRFSELIRRXXXX 437
+R+ +G +V V P PS+P P+ N + RR SE RR
Sbjct: 375 SRNASGAR-----HVASSSSRTS---VQPSPSSPALTPYQNNSLHNQRRLSENFRRSLLS 426
Query: 438 XXXXXXXXXXXNQTPPHSVPLSPEEMVLSSGAGN--QRHHPSYPRSASRLERQDGVLGFP 495
++ H P SP E VL SG N Q H+ + R+ R + QD G
Sbjct: 427 SLVTQQRAA---RSLAH--PASPNEHVLQSGGDNTSQVHNRASSRAGPR-QGQDAT-GIS 479
Query: 496 HPLRALAAVGEGRNRVLVSEIRNVLDLMRRGEGLQFEDVMILDQSVFFGVADINDRHRDM 555
H LR LA+ GR R+ SEIRN+L+ MRR L+ EDVM+L+QS+ G ADI+DR+RDM
Sbjct: 480 HSLRGLASTSRGRTRMGASEIRNILEHMRRAGNLRLEDVMLLNQSIMLGAADIHDRYRDM 539
Query: 556 RLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXY 615
RLDVDNM+YEELL+LEERIG+V TGL EETI NRLKQQKY S S Y
Sbjct: 540 RLDVDNMTYEELLSLEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQEVEPCCVCQEEY 599
Query: 616 NDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
+ E+ G L CGHDFH+ CIK+WL KNLCPICKTT L+T++
Sbjct: 600 KEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKTTGLNTAN 641
Score = 172 (65.6 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 66/230 (28%), Positives = 106/230 (46%)
Query: 159 ASCKRKALEGNV-ENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRG 217
ASCKRKAL+ + ++SS GG FQ SS+ + Y+ +++ +D + ++ GR
Sbjct: 176 ASCKRKALDASGGQSSSTGGFRE-FQRGVSSSWISGPTYYS--PAMTANDLNISLDHGR- 231
Query: 218 LGVRGPVRDGLPEWPVAGNAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRHSSISSTQ 277
RG V +P E S RNY V +NP+ QQ+ + +N A S++S
Sbjct: 232 ---RGLVSSAVPNLSPPTITESSSRNYPVWVNPTYQQETV------SNFA---PSLNSP- 278
Query: 278 ESSRLPPNDQSLDSMAAPSVENTGPQSQPV-LLHVPMFPQNLQPFRWDKXXXXXXXXXXX 336
+P + Q + ++ N Q+ H+P P + F+W+
Sbjct: 279 --GLIPADHQQISMRYGHALGNFASQNPNAPATHMP--PVSRNTFQWNTSPVAAVISSSS 334
Query: 337 XNGARDRDV-QREEARPRIMGRNILENPMFIPAPDLRNLVRSPANRSLAG 385
DR+V R R R N LE P+F+PAP+LRN+ +R+ +G
Sbjct: 335 ATPV-DRNVIHRNATRQR---SNTLEIPLFVPAPELRNVAHGHISRNASG 380
Score = 169 (64.5 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 37/88 (42%), Positives = 58/88 (65%)
Query: 1 MQGQRGTIGSLPETLSFDHGSTSTSAV-DQQMFWNNMRNPPESRPPDNMLSPAGTRTTMT 59
MQG+R ++GSL + L+F+ GSTS++AV DQQ+ W N+ N ++ D M S A T T
Sbjct: 1 MQGERASLGSLSKALNFERGSTSSNAVVDQQIRWENLHNYGDNDLQDYMSSAADTNPT-- 58
Query: 60 YVNSMSHEQQMSTAWSLGEPSSHGPQNK 87
+ NS+ HE++ +++GE SS G +N+
Sbjct: 59 FANSVYHEKRGLQRFNIGEASSSGTKNE 86
>TAIR|locus:2124271 [details] [associations]
symbol:MBR2 "MED25 BINDING RING-H2 PROTEIN 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AL021961 EMBL:AL161584
eggNOG:NOG291583 EMBL:BT015366 EMBL:BT020341 EMBL:AK229265
IPI:IPI00526499 PIR:T05432 RefSeq:NP_195130.1 UniGene:At.2085
ProteinModelPortal:O49500 SMR:O49500 PaxDb:O49500 PRIDE:O49500
EnsemblPlants:AT4G34040.1 GeneID:829550 KEGG:ath:AT4G34040
TAIR:At4g34040 HOGENOM:HOG000241085 InParanoid:O49500 OMA:DAPRINS
PhylomeDB:O49500 ProtClustDB:CLSN2683588 ArrayExpress:O49500
Genevestigator:O49500 Uniprot:O49500
Length = 666
Score = 701 (251.8 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 197/511 (38%), Positives = 260/511 (50%)
Query: 159 ASCKRKALEGNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPS-GQVNSGRG 217
+SCKRKALEG +S G + F E+ A A Y+ SSLS+S PS N
Sbjct: 179 SSCKRKALEGAPSHSFPGESHGCFFQTENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQ 238
Query: 218 LGVRGPVRDGLPEW-PVAGNAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRHS-SISS 275
G+ P R GL V +A S R+ P +++ P Q P + A + S SS
Sbjct: 239 SGLPEP-RFGLGGGRAVTASAFPSTRSTETISRPG--RRLNP-GQPPESVAFSFTQSGSS 294
Query: 276 TQESSRLPPNDQSLDSMAAPSVENTGPQS----QPVLLHVPMFPQNLQPFRWDKXXXXXX 331
++ +LP +D + A ++ TG S QP ++H+P +N+ F W
Sbjct: 295 VRQQQQLPATSPFVDPLDARAIPVTGSSSSGDGQPSMIHLPALTRNIHQFAWS------A 348
Query: 332 XXXXXXNGARDRDVQREEARPRIMGRNILENPMFI-PAPDLRNLVRSPANRSLAGGNIST 390
N + + +A PRI E P+F PA + RN V+ S GN ST
Sbjct: 349 SSSSRANSMPEEGLSPWDA-PRINS----EQPVFTTPANETRNPVQDQFCWSFTRGNPST 403
Query: 391 PGNVXXXXXXXXXXXVH--PPSAPTWV-PHPNPYQYPRRFSELIRRXXXXXXXXXXXXXX 447
G+ +H P+ PTWV PH R SE+
Sbjct: 404 SGDSPFVPRAGSSSGIHGLQPN-PTWVTPHNQS-----RISEVAPWSLFPSIESESATHG 457
Query: 448 XNQTP--PHSVPLSPEEMVLSSGAGNQRHHPSYPRSASRLERQDGVLGFPHPLRALAAVG 505
+ P P +S E SG+ ++ H RS LERQ+ L H R+LAA
Sbjct: 458 AS-LPLLPTGPSVSSNEAAAPSGSSSRSHRSRQRRSGLLLERQNDHLHLRHLGRSLAADN 516
Query: 506 EGRNRVLVSEIRNVLDLMRRGEGLQFEDVMILDQSVFFGVADINDRHRDMRLDVDNMSYE 565
+GRNR L+SEIR VL MRRGE L+FED M+ D ++ G+A+++DRHRDMRLDVDNMSYE
Sbjct: 517 DGRNR-LISEIRQVLSAMRRGENLRFEDYMVFDPLIYQGMAEMHDRHRDMRLDVDNMSYE 575
Query: 566 ELLALEERIGNVSTGLTEETIKNRLKQQKYSISL-GSXXXXXXXXXXXXXYNDGEDTGIL 624
ELLAL ERIG+VSTGL+EE I +KQ K++ S GS Y +G+D G L
Sbjct: 576 ELLALGERIGDVSTGLSEEVILKVMKQHKHTSSAAGSHQDMEPCCVCQEEYAEGDDLGTL 635
Query: 625 HCGHDFHTSCIKQWLMHKNLCPICKTTALST 655
CGH+FHT+C+KQWLM KNLCPICKT ALST
Sbjct: 636 GCGHEFHTACVKQWLMLKNLCPICKTVALST 666
Score = 91 (37.1 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 1 MQGQRGTIGSLPETLSFDHGSTSTSAVDQQMFWNNMRNPPESRPPDNMLSPAGTRTTMTY 60
MQG R T G +++ G S + + NN+ NP + + P+N +G T Y
Sbjct: 1 MQGPRST-GDSSTGINYADGEPICST-NSETTSNNILNPVDVQFPNNTTG-SGRPT---Y 54
Query: 61 VNSMSHEQQMSTAWSLGEPSSH-GPQNKVTHDERRT 95
+S SH Q WS GE SS GP + + + +T
Sbjct: 55 ASSSSHVVQNHNWWSFGESSSRLGPSDHLNSNGSKT 90
>TAIR|locus:2125284 [details] [associations]
symbol:AT4G31450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 ProtClustDB:CLSN2690147
HOGENOM:HOG000071011 EMBL:AF424605 EMBL:BT002300 IPI:IPI00533212
RefSeq:NP_567877.1 UniGene:At.20136 ProteinModelPortal:Q944Q9
SMR:Q944Q9 EnsemblPlants:AT4G31450.1 GeneID:829272
KEGG:ath:AT4G31450 TAIR:At4g31450 InParanoid:Q944Q9 OMA:PICKATA
PhylomeDB:Q944Q9 Genevestigator:Q944Q9 Uniprot:Q944Q9
Length = 497
Score = 321 (118.1 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 70/155 (45%), Positives = 90/155 (58%)
Query: 513 VSEIRNVLDLMRRGEGLQFEDVMILDQSVFFGVADINDRHRDMRLDVDNMSYEELLALEE 572
+SEI LD + + L +ED++I++ + G +D+HRDMRLD+DNMSYEELLALEE
Sbjct: 343 ISEILPELDRIEQDIELNYEDLLIMETGLLLGGLSFHDQHRDMRLDIDNMSYEELLALEE 402
Query: 573 RIGNVSTGLTEETIKNRLKQQKYS---ISLGSXXXXXXXXXXXXX-------YNDGEDTG 622
RIG VST LTEE I LK Y +S GS Y G++ G
Sbjct: 403 RIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITKSPSDNKEDAKCSICQEEYTIGDEVG 462
Query: 623 ILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
LHC H +H C+++WL K+ CPICK TA TSS
Sbjct: 463 RLHCEHTYHVKCVQEWLRIKSWCPICKATA-ETSS 496
>TAIR|locus:2149378 [details] [associations]
symbol:AT5G24870 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
ProtClustDB:CLSN2690147 EMBL:AY136427 EMBL:BT014966 IPI:IPI00519150
RefSeq:NP_568462.2 RefSeq:NP_974832.1 UniGene:At.23213
ProteinModelPortal:Q8L775 SMR:Q8L775 EnsemblPlants:AT5G24870.1
EnsemblPlants:AT5G24870.2 GeneID:832556 KEGG:ath:AT5G24870
TAIR:At5g24870 eggNOG:NOG316091 HOGENOM:HOG000071011
InParanoid:Q8L775 OMA:EEKMGTV PhylomeDB:Q8L775 ArrayExpress:Q8L775
Genevestigator:Q8L775 Uniprot:Q8L775
Length = 520
Score = 305 (112.4 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 65/150 (43%), Positives = 90/150 (60%)
Query: 513 VSEIRNVLDLMRRGEGLQFEDVMILDQSVFF-GVADINDRHRDMRLDVDNMSYEELLALE 571
V+E+ L+ + + E L +E + +L+ ++F G++ +D+HRDMRLD+DNMSYEELLALE
Sbjct: 366 VAEVLLALERIEQDEELTYEQLAVLETNLFLNGMSSFHDQHRDMRLDIDNMSYEELLALE 425
Query: 572 ERIGNVSTGLTEETIKNRLKQQKY-------SISLGSXXXXXXXXXXXXXYNDGEDTGIL 624
E++G VST L+EE + LK Y I L Y DG++ G L
Sbjct: 426 EKMGTVSTALSEEALLKSLKSSIYRPNDESDDICLNKDDDVKCSICQEE-YVDGDEVGTL 484
Query: 625 HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654
C H +H SC +QWL KN CPICKT+A S
Sbjct: 485 PCQHKYHVSCAQQWLRMKNWCPICKTSAES 514
>TAIR|locus:2159634 [details] [associations]
symbol:AT5G10650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006914 "autophagy" evidence=RCA] [GO:0007165
"signal transduction" evidence=RCA] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0010260 "organ senescence"
evidence=RCA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002688 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:BT015918 EMBL:BT020582
IPI:IPI00534438 RefSeq:NP_001031869.1 RefSeq:NP_196626.2
UniGene:At.32350 ProteinModelPortal:Q5XEP8 SMR:Q5XEP8
EnsemblPlants:AT5G10650.1 EnsemblPlants:AT5G10650.2 GeneID:830929
KEGG:ath:AT5G10650 TAIR:At5g10650 InParanoid:Q5XEP8 OMA:ISSHGNG
PhylomeDB:Q5XEP8 ProtClustDB:CLSN2690147 Genevestigator:Q5XEP8
Uniprot:Q5XEP8
Length = 525
Score = 287 (106.1 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 62/148 (41%), Positives = 88/148 (59%)
Query: 513 VSEIRNVLDLMRRGEGLQFEDVMILDQSVFF-GVADINDRHRDMRLDVDNMSYEELLALE 571
++E+ L+ + E L +E + ++ ++F G+ D+HRDMRLD+DNMSYEELLAL
Sbjct: 373 IAEVLLALERIEHDEELTYEQLASIETNLFSSGMFRFYDQHRDMRLDIDNMSYEELLALG 432
Query: 572 ERIGNVSTGLTEETIKNRLKQQKY-------SISLGSXXXXXXXXXXXXXYNDGEDTGIL 624
+++G VST L+EE + LKQ Y SISL Y DG++ G +
Sbjct: 433 DKMGTVSTALSEEALSRSLKQSIYQETDETGSISLYKDDDIKCSICQEE-YVDGDELGTI 491
Query: 625 HCGHDFHTSCIKQWLMHKNLCPICKTTA 652
C H +H SC++QWL KN CPICKT+A
Sbjct: 492 PCQHMYHVSCVQQWLRMKNWCPICKTSA 519
>TAIR|locus:2027804 [details] [associations]
symbol:AT1G73760 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
EMBL:AC012679 ProtClustDB:CLSN2679891 IPI:IPI00547580 PIR:H96764
RefSeq:NP_177517.1 UniGene:At.27716 ProteinModelPortal:Q9C9T6
SMR:Q9C9T6 EnsemblPlants:AT1G73760.1 GeneID:843711
KEGG:ath:AT1G73760 TAIR:At1g73760 eggNOG:NOG237784
HOGENOM:HOG000077709 InParanoid:Q9C9T6 OMA:SADWDAS PhylomeDB:Q9C9T6
Genevestigator:Q9C9T6 Uniprot:Q9C9T6
Length = 367
Score = 263 (97.6 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 57/130 (43%), Positives = 78/130 (60%)
Query: 527 EGLQFEDVMILDQSVFFGVADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETI 586
+GL E +M+ + V GV D+ RDMRL+VDNM+YE+LL L ERIG+V+TGLTE+ I
Sbjct: 240 DGLA-EMMMMQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQI 298
Query: 587 KNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCP 646
K+ L++ K + Y ++ G L CGH FH C+ QWL+ KN CP
Sbjct: 299 KSCLRKVK-PCRQDTTVADRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCP 357
Query: 647 ICKTTALSTS 656
+CKT A + S
Sbjct: 358 VCKTMAYNKS 367
Score = 43 (20.2 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 194 SASYNGGSSLSISDPS 209
S+SYNGGS +S+ S
Sbjct: 116 SSSYNGGSIKILSEAS 131
>TAIR|locus:2009660 [details] [associations]
symbol:AT1G53190 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:BT020580 EMBL:BT029187
IPI:IPI00525716 RefSeq:NP_001031177.1 RefSeq:NP_175727.2
UniGene:At.43317 ProteinModelPortal:Q5EAI9 SMR:Q5EAI9 PRIDE:Q5EAI9
EnsemblPlants:AT1G53190.1 EnsemblPlants:AT1G53190.2 GeneID:841753
KEGG:ath:AT1G53190 TAIR:At1g53190 HOGENOM:HOG000238152
InParanoid:Q5EAI9 OMA:TLDCGHE PhylomeDB:Q5EAI9
ProtClustDB:CLSN2688389 Genevestigator:Q5EAI9 Uniprot:Q5EAI9
Length = 494
Score = 260 (96.6 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 56/133 (42%), Positives = 77/133 (57%)
Query: 532 EDVMILDQSVFFGVADIN--DRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNR 589
++V +L+ F G + N D HRDMRLD++ MSYEELLAL ERIG V+TGL EE +KN
Sbjct: 355 DEVALLEFGDFLGGSGNNHIDHHRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNH 414
Query: 590 LKQQKYS-ISLGSXXXXXXXXXXXX--------XYNDGEDTGILHCGHDFHTSCIKQWLM 640
LK + S I+ + + E L CGH++H C+++WL+
Sbjct: 415 LKTRTCSGINFEKESSSPRTKDLETEPCTICQESFKNEEKIATLDCGHEYHAECLEKWLI 474
Query: 641 HKNLCPICKTTAL 653
KN+CPICK+ AL
Sbjct: 475 VKNVCPICKSEAL 487
Score = 50 (22.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 450 QTPPHSVPLSPEEMVLSSGAGNQ----RHHPSYPRSASRLERQDGVLGFPHPLRALAA 503
Q PP +P S V+ ++ H + R + + +G+ G P L LAA
Sbjct: 93 QAPPGQLPSSSSHGVVGVSPDHEYERNAHFMDHTRGTYKRKNAEGIPGQPQYLSTLAA 150
>TAIR|locus:2030933 [details] [associations]
symbol:AT1G17970 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7 EMBL:AF428290
EMBL:AY116963 IPI:IPI00539075 RefSeq:NP_173239.1 UniGene:At.26262
ProteinModelPortal:Q944L9 SMR:Q944L9 IntAct:Q944L9
EnsemblPlants:AT1G17970.1 GeneID:838377 KEGG:ath:AT1G17970
TAIR:At1g17970 InParanoid:Q944L9 OMA:ESEIHRC PhylomeDB:Q944L9
ProtClustDB:CLSN2679891 Genevestigator:Q944L9 Uniprot:Q944L9
Length = 368
Score = 238 (88.8 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 49/121 (40%), Positives = 67/121 (55%)
Query: 533 DVMILDQSVFFG-VADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLK 591
++ +L G + D D + ++RLDVD+MSYE+LL L +RIG V+TGL E I L
Sbjct: 246 EMRMLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLKESEIHRCLG 305
Query: 592 QQKYSISLGSXXXXXXXXXXXXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTT 651
+ K S+S Y ++ G L+CGH FH C+KQWL KN CP+CK
Sbjct: 306 KIKPSVS--HTLVDRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCKKA 363
Query: 652 A 652
A
Sbjct: 364 A 364
>TAIR|locus:2086305 [details] [associations]
symbol:AT3G15070 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 EMBL:CP002686 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 UniGene:At.24446
UniGene:At.70390 eggNOG:NOG291583 ProtClustDB:CLSN2688389
EMBL:AF385699 EMBL:AY143948 IPI:IPI00522513 RefSeq:NP_001189897.1
RefSeq:NP_566498.1 ProteinModelPortal:Q94F54 SMR:Q94F54
EnsemblPlants:AT3G15070.1 EnsemblPlants:AT3G15070.2 GeneID:820736
KEGG:ath:AT3G15070 OMA:TEHERNA Genevestigator:Q94F54 Uniprot:Q94F54
Length = 486
Score = 238 (88.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 542 FFGVADINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQ---KYSIS 598
F+ + D H+DMRLD+++MSYEELLAL ++IG V TGL+ E +K LK++ + ++
Sbjct: 357 FYNAVNYVDHHQDMRLDIEDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRTSTRINLE 416
Query: 599 LGSXXXXXXXXXXX--XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653
G Y + + L C H +H C+K+WL+ KN+CPICK+ AL
Sbjct: 417 EGPSTDLETDSCTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVCPICKSEAL 473
Score = 38 (18.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 410 SAPTWVPHPNP-----YQYP 424
++ ++VPHP P Y YP
Sbjct: 15 NSQSFVPHPEPRIGTNYLYP 34
>TAIR|locus:2155513 [details] [associations]
symbol:AT5G67120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
EMBL:AB020742 IPI:IPI00525708 RefSeq:NP_201513.1 UniGene:At.55725
ProteinModelPortal:Q9FHA1 SMR:Q9FHA1 EnsemblPlants:AT5G67120.1
GeneID:836847 KEGG:ath:AT5G67120 TAIR:At5g67120 eggNOG:NOG263912
HOGENOM:HOG000152468 InParanoid:Q9FHA1 OMA:WLQSSTN PhylomeDB:Q9FHA1
ProtClustDB:CLSN2916539 Genevestigator:Q9FHA1 Uniprot:Q9FHA1
Length = 272
Score = 172 (65.6 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 36/89 (40%), Positives = 46/89 (51%)
Query: 560 DNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGE 619
D +YEELL++ + G+ TGL+EE I L ++KY S D E
Sbjct: 181 DIFTYEELLSITDETGDERTGLSEEVIDENLIRRKYEKR--SDDETKRCVICQQKLKDNE 238
Query: 620 DTGILHCGHDFHTSCIKQWLMHKNLCPIC 648
+ L CGHDFH CIK WLM N CP+C
Sbjct: 239 EVSKLGCGHDFHFGCIKNWLMVTNKCPLC 267
>TAIR|locus:2092271 [details] [associations]
symbol:AT3G19910 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7 GO:GO:0004842
GO:GO:0051865 EMBL:AB025631 EMBL:AY045590 EMBL:AY045984
EMBL:AY079353 EMBL:AY084453 IPI:IPI00540114 RefSeq:NP_566651.1
UniGene:At.19776 ProteinModelPortal:Q9LT17 SMR:Q9LT17 STRING:Q9LT17
PaxDb:Q9LT17 PRIDE:Q9LT17 EnsemblPlants:AT3G19910.1 GeneID:821529
KEGG:ath:AT3G19910 TAIR:At3g19910 eggNOG:NOG313539
HOGENOM:HOG000239779 InParanoid:Q9LT17 OMA:HANEDDQ PhylomeDB:Q9LT17
ProtClustDB:CLSN2688581 Genevestigator:Q9LT17 Uniprot:Q9LT17
Length = 340
Score = 171 (65.3 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 36/101 (35%), Positives = 53/101 (52%)
Query: 557 LDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYN 616
+D D +SYEELLAL + +G S GL+ +TI + L ++Y Y
Sbjct: 238 MDPDELSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDYE 296
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
D ED +L C H +H+ CI WL +CP+C + +STS+
Sbjct: 297 DDEDLILLPCKHSYHSECINNWLKINKVCPVC-SAEVSTST 336
>TAIR|locus:504955576 [details] [associations]
symbol:BB "BIG BROTHER" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IDA] [GO:0016567 "protein ubiquitination"
evidence=IDA] [GO:0031624 "ubiquitin conjugating enzyme binding"
evidence=IPI] [GO:0046621 "negative regulation of organ growth"
evidence=IMP] [GO:0048437 "floral organ development" evidence=IMP]
[GO:0051865 "protein autoubiquitination" evidence=IDA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0048437 GO:GO:0004842
GO:GO:0046621 GO:GO:0051865 HOGENOM:HOG000239779 EMBL:AL732522
EMBL:BT010197 EMBL:AK318710 EMBL:AK227673 IPI:IPI00538123
IPI:IPI00969304 RefSeq:NP_001030922.1 RefSeq:NP_680148.1
UniGene:At.44049 HSSP:P28990 ProteinModelPortal:Q8L649 SMR:Q8L649
EnsemblPlants:AT3G63530.1 EnsemblPlants:AT3G63530.2 GeneID:825528
KEGG:ath:AT3G63530 TAIR:At3g63530 eggNOG:NOG327333
InParanoid:Q8L649 OMA:SINKVCP PhylomeDB:Q8L649
ProtClustDB:CLSN2690625 Genevestigator:Q8L649 Uniprot:Q8L649
Length = 248
Score = 147 (56.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 32/102 (31%), Positives = 47/102 (46%)
Query: 557 LDVDNMSYEELLALEERIGNVSTGLTEETIKNR-LKQQKYSISLGSXXXXXXXXXXXXXY 615
+D D M+YEEL+ L E +G S GL++E I+ K+ K+ Y
Sbjct: 145 IDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKY 204
Query: 616 NDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
GE L C H +H+ CI +WL +CP+C + S
Sbjct: 205 KIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEVFGEPS 246
Score = 44 (20.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 538 DQSVFFGVADINDRHRDMRLDVDNMSYEELL 568
D + F+G D+ND M + N Y ++
Sbjct: 69 DNASFYGSYDMNDHLSRMSIGRTNWDYHPMV 99
>UNIPROTKB|E2R7H1 [details] [associations]
symbol:RNF111 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IEA] [GO:0030579 "ubiquitin-dependent SMAD
protein catabolic process" evidence=IEA] [GO:0030511 "positive
regulation of transforming growth factor beta receptor signaling
pathway" evidence=IEA] [GO:0007389 "pattern specification process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0030511 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0031398 GO:GO:0004842 GO:GO:0007389
GO:GO:0000209 GO:GO:0030579 CTD:54778 KO:K10635 OMA:CDDSQKQ
GeneTree:ENSGT00670000097625 EMBL:AAEX03016176 EMBL:AAEX03016177
EMBL:AAEX03016178 RefSeq:XP_535498.2 ProteinModelPortal:E2R7H1
Ensembl:ENSCAFT00000026314 GeneID:478323 KEGG:cfa:478323
Uniprot:E2R7H1
Length = 985
Score = 130 (50.8 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
++EEL+ LEER+GNV+ G ++ TI+ ++ K++K
Sbjct: 878 NFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICL 937
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 938 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 974
Score = 85 (35.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 37/141 (26%), Positives = 55/141 (39%)
Query: 179 SSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLG----VRGPVRDGLPEWPVA 234
++ F H ++A P+ S +G S ++ P Q L P L P+
Sbjct: 599 AAIFGHQAAAAAPSQPLSIDGYGSSMVAQPQPQPPPQASLSSCRHYMPPPYASLTR-PLH 657
Query: 235 GNAERSRRNYRVRINPSNQQKVMPYAQF--PTNAAVRHSSISSTQESSRL-PPNDQSLDS 291
A ++ NP Q + P + P HS ISS S + PP L S
Sbjct: 658 HQASACPHSHG---NPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLAS 714
Query: 292 MAAPSVENTGPQSQPVLLHVP 312
AAP ++ P QP+ H+P
Sbjct: 715 TAAPIPQHLPPTHQPISHHIP 735
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 35 NMRNPPES-RPPDNMLSPAGTRTTMTYVNSMSHEQQMSTAWSLGEPSSHGPQNKVT 89
N NP S + D + G++ + S + T SLG+ S N VT
Sbjct: 412 NNSNPSTSEQASDTASAVTGSQPSTVSETSATLTSNSMTGTSLGDDSRRTASNAVT 467
>UNIPROTKB|F1S053 [details] [associations]
symbol:RNF111 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IEA] [GO:0030579 "ubiquitin-dependent SMAD
protein catabolic process" evidence=IEA] [GO:0030511 "positive
regulation of transforming growth factor beta receptor signaling
pathway" evidence=IEA] [GO:0007389 "pattern specification process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0030511 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0031398 GO:GO:0004842 GO:GO:0007389
GO:GO:0000209 GO:GO:0030579 OMA:CDDSQKQ
GeneTree:ENSGT00670000097625 EMBL:CU582792 EMBL:CU464072
Ensembl:ENSSSCT00000005070 Uniprot:F1S053
Length = 994
Score = 96 (38.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 951 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 983
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 38/141 (26%), Positives = 54/141 (38%)
Query: 179 SSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAGNAE 238
++ F H ++A P+ S +G S ++ P Q L R +P P A A
Sbjct: 600 AAIFGHQAAAAAPSQPLSIDGYGSSMVAQPQPQPPPQASLS---SCRHYMPP-PYASLAR 655
Query: 239 RSRRNYRV----RINPSNQQKVMPYAQF--PTNAAVRHSSISSTQESSRL-PPNDQSLDS 291
NP Q + P + P HS ISS S + PP L S
Sbjct: 656 PLHHQTSACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLTS 715
Query: 292 MAAPSVENTGPQSQPVLLHVP 312
AAP ++ P QP+ H+P
Sbjct: 716 TAAPIPQHLPPTHQPISHHIP 736
Score = 76 (31.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G ++ TI+ KY
Sbjct: 879 NFEELIHLEERLGNVNRGASQGTIERCTYPHKY 911
>UNIPROTKB|Q5R476 [details] [associations]
symbol:RNF111 "E3 ubiquitin-protein ligase Arkadia"
species:9601 "Pongo abelii" [GO:0032184 "SUMO polymer binding"
evidence=ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
HSSP:Q9LRB7 GO:GO:0032184 CTD:54778 HOVERGEN:HBG093884 KO:K10635
EMBL:CR861381 RefSeq:NP_001124565.1 UniGene:Pab.18469
ProteinModelPortal:Q5R476 GeneID:100169738 KEGG:pon:100169738
InParanoid:Q5R476 Uniprot:Q5R476
Length = 986
Score = 130 (50.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
++EEL+ LEER+GNV+ G ++ TI+ ++ K++K
Sbjct: 879 NFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICL 938
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 939 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 975
Score = 79 (32.9 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 37/142 (26%), Positives = 56/142 (39%)
Query: 179 SSYFQHAESSACPAVS-ASYNGGSSLSISDPSGQVNSGRGLG----VRGPVRDGLPEWPV 233
++ F H ++A P+ +S +G S ++ P Q L P L P+
Sbjct: 599 AAIFGHQAAAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPTYASLTR-PL 657
Query: 234 AGNAERSRRNYRVRINPSNQQKVMPYAQF--PTNAAVRHSSISSTQESSRL-PPNDQSLD 290
A ++ NP Q + P + P HS ISS S + PP L
Sbjct: 658 HHQASACPHSHG---NPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLA 714
Query: 291 SMAAPSVENTGPQSQPVLLHVP 312
S AAP ++ P QP+ H+P
Sbjct: 715 STAAPIPQHLPPTHQPISHHIP 736
>MGI|MGI:1934919 [details] [associations]
symbol:Rnf111 "ring finger 111" species:10090 "Mus musculus"
[GO:0000209 "protein polyubiquitination" evidence=IGI;IMP;IDA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007389
"pattern specification process" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0030511 "positive regulation of transforming growth factor beta
receptor signaling pathway" evidence=IMP;IDA] [GO:0030579
"ubiquitin-dependent SMAD protein catabolic process"
evidence=IMP;IDA] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IMP;IDA] [GO:0032184 "SUMO polymer
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0046332 "SMAD binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143
MGI:MGI:1934919 Prosite:PS00518 GO:GO:0005737 GO:GO:0045893
GO:GO:0043234 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0008270 GO:GO:0030511 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0031398 HSSP:Q9LRB7 GO:GO:0004842 GO:GO:0007389 GO:GO:0000209
GO:GO:0032184 GO:GO:0030579 CTD:54778 eggNOG:NOG291583
HOVERGEN:HBG093884 KO:K10635 OMA:CDDSQKQ EMBL:AF330197
EMBL:AK048110 EMBL:AK036351 EMBL:AK137148 EMBL:BC054842
EMBL:BC069835 IPI:IPI00117820 IPI:IPI00830944 RefSeq:NP_291082.1
UniGene:Mm.29783 ProteinModelPortal:Q99ML9 SMR:Q99ML9 IntAct:Q99ML9
MINT:MINT-1899537 STRING:Q99ML9 PhosphoSite:Q99ML9 PRIDE:Q99ML9
Ensembl:ENSMUST00000034739 Ensembl:ENSMUST00000113595 GeneID:93836
KEGG:mmu:93836 UCSC:uc009qoa.1 UCSC:uc009qoe.1
GeneTree:ENSGT00670000097625 HOGENOM:HOG000154152 InParanoid:Q99ML9
OrthoDB:EOG4MSCXR NextBio:351685 Bgee:Q99ML9 CleanEx:MM_RNF111
Genevestigator:Q99ML9 Uniprot:Q99ML9
Length = 989
Score = 96 (38.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 946 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 978
Score = 79 (32.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 40/142 (28%), Positives = 57/142 (40%)
Query: 179 SSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLG----VRGPVRDGL--PEWP 232
++ F H +++A P S +G S ++ P Q L P L P
Sbjct: 596 AAVFGH-QAAAAPTQPLSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHH 654
Query: 233 VAGNAERSRRNYRVRINPSNQ-QKVMPYAQFPTNAAVRHSSISSTQESSRL-PPNDQSLD 290
A S N + P Q V+P+ P +A HS ISS S + PP L
Sbjct: 655 QASACHHSHGNAPPQTQPPPQVDYVIPH---PVHAF--HSQISSHAASHPVAPPPPTHLG 709
Query: 291 SMAAPSVENTGPQSQPVLLHVP 312
S AAP ++ P QP+ H+P
Sbjct: 710 STAAPIPQHLPPAHQPISHHIP 731
Score = 76 (31.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G ++ TI+ KY
Sbjct: 874 NFEELIHLEERLGNVNRGASQGTIERCTYPHKY 906
>UNIPROTKB|A6QLE0 [details] [associations]
symbol:RNF111 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IEA] [GO:0030579 "ubiquitin-dependent SMAD
protein catabolic process" evidence=IEA] [GO:0030511 "positive
regulation of transforming growth factor beta receptor signaling
pathway" evidence=IEA] [GO:0007389 "pattern specification process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0030511 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0031398 GO:GO:0004842 GO:GO:0007389
GO:GO:0000209 GO:GO:0030579 CTD:54778 eggNOG:NOG291583
HOVERGEN:HBG093884 KO:K10635 OMA:CDDSQKQ
GeneTree:ENSGT00670000097625 HOGENOM:HOG000154152 OrthoDB:EOG4MSCXR
EMBL:DAAA02028816 EMBL:DAAA02028817 EMBL:DAAA02028818 EMBL:BC147931
IPI:IPI00867083 RefSeq:NP_001095709.1 UniGene:Bt.48619
STRING:A6QLE0 Ensembl:ENSBTAT00000018858 GeneID:540353
KEGG:bta:540353 InParanoid:A6QLE0 NextBio:20878580 Uniprot:A6QLE0
Length = 994
Score = 96 (38.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 951 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 983
Score = 79 (32.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 38/142 (26%), Positives = 54/142 (38%)
Query: 179 SSYFQH-AESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAGNA 237
++ F H A ++A P+ S +G S ++ P Q L R +P P A
Sbjct: 599 AAIFGHQAAAAAAPSQPLSIDGYGSSMVAQPQPQPPPQASLS---SCRHYMPP-PYASLT 654
Query: 238 ERSRRNYRV----RINPSNQQKVMPYAQF--PTNAAVRHSSISSTQESSRL-PPNDQSLD 290
NP Q + P + P HS ISS S + PP L
Sbjct: 655 RPLHHQTSACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLA 714
Query: 291 SMAAPSVENTGPQSQPVLLHVP 312
S AAP ++ P QP+ H+P
Sbjct: 715 STAAPIPQHLPPTHQPISHHIP 736
Score = 76 (31.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G ++ TI+ KY
Sbjct: 879 NFEELIHLEERLGNVNRGASQGTIERCTYPHKY 911
>ZFIN|ZDB-GENE-081104-369 [details] [associations]
symbol:rnf165b "ring finger protein 165b"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
ZFIN:ZDB-GENE-081104-369 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00670000097625
EMBL:CABZ01049924 EMBL:CT573450 IPI:IPI00890535 RefSeq:XP_701217.3
UniGene:Dr.65572 Ensembl:ENSDART00000109989 GeneID:572413
KEGG:dre:572413 CTD:572413 NextBio:20890947 Uniprot:F1R351
Length = 347
Score = 140 (54.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 38/108 (35%), Positives = 48/108 (44%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKYS------ISLGSXXXXXXXXXX----X 612
SYEELL LE+R+GNV+ G + TI+ KY + +G
Sbjct: 240 SYEELLQLEDRLGNVNRGAVQATIERFTFPHKYKKRRPLELKIGMDEEELDTDEKCTICL 299
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT---TALSTSS 657
D ED L C H FH +C+ QWL CPIC+ T LS S
Sbjct: 300 SMLEDEEDVRRLPCMHLFHQACVDQWLATNKKCPICRVDIETQLSPDS 347
Score = 51 (23.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 256 VMPYAQFPTNAAVRHSSISSTQESSRLPPNDQSLDSMAAPSVENT-GPQSQPVLLHVPMF 314
V P AQ P + + H S T S L P Q ++ PS+ + P Q + P
Sbjct: 40 VGPQAQIPVDFPMPHPGQSQTGMSHHLGPAHQPTAALH-PSLNHIPAPPFQDIPAP-PFL 97
Query: 315 PQNL 318
PQ L
Sbjct: 98 PQAL 101
>UNIPROTKB|Q6ZNA4 [details] [associations]
symbol:RNF111 "E3 ubiquitin-protein ligase Arkadia"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0007389 "pattern specification process"
evidence=IEA] [GO:0030511 "positive regulation of transforming
growth factor beta receptor signaling pathway" evidence=IEA]
[GO:0030579 "ubiquitin-dependent SMAD protein catabolic process"
evidence=IEA] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0046332 "SMAD binding" evidence=IEA] [GO:0032184
"SUMO polymer binding" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0007179 "transforming
growth factor beta receptor signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005737
Reactome:REACT_111102 Reactome:REACT_6900
Pathway_Interaction_DB:tgfbrpathway GO:GO:0043234 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0008270 GO:GO:0045944
GO:GO:0007179 GO:GO:0030511 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0031398 GO:GO:0004842 GO:GO:0007389 GO:GO:0000209
EMBL:CH471082 GO:GO:0006367 GO:GO:0032184 GO:GO:0030579
EMBL:AC092757 EMBL:AK095327 EMBL:AK131304 EMBL:AK131488
EMBL:AL157474 EMBL:BX538130 EMBL:BX647259 EMBL:AC025918
EMBL:AC090515 EMBL:BC010369 EMBL:BC020984 EMBL:BC060862
IPI:IPI00418593 IPI:IPI00798384 IPI:IPI00829658 PIR:T46904
RefSeq:NP_001257457.1 RefSeq:NP_001257458.1 RefSeq:NP_001257459.1
RefSeq:NP_060080.6 UniGene:Hs.404423 UniGene:Hs.603489
UniGene:Hs.741727 PDB:2KIZ PDBsum:2KIZ ProteinModelPortal:Q6ZNA4
SMR:Q6ZNA4 IntAct:Q6ZNA4 MINT:MINT-1187466 STRING:Q6ZNA4
PhosphoSite:Q6ZNA4 DMDM:308153555 PRIDE:Q6ZNA4
Ensembl:ENST00000348370 Ensembl:ENST00000434298
Ensembl:ENST00000557998 Ensembl:ENST00000559209
Ensembl:ENST00000561186 GeneID:54778 KEGG:hsa:54778 UCSC:uc002afs.3
UCSC:uc002aft.3 UCSC:uc002afv.3 CTD:54778 GeneCards:GC15P059160
HGNC:HGNC:17384 HPA:HPA038576 HPA:HPA038577 MIM:605840
neXtProt:NX_Q6ZNA4 PharmGKB:PA134868772 eggNOG:NOG291583
HOVERGEN:HBG093884 InParanoid:Q6ZNA4 KO:K10635 OMA:CDDSQKQ
GenomeRNAi:54778 NextBio:57437 Bgee:Q6ZNA4 CleanEx:HS_RNF111
Genevestigator:Q6ZNA4 Uniprot:Q6ZNA4
Length = 994
Score = 96 (38.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 951 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 983
Score = 78 (32.5 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 249 NPSNQQKVMPYAQF--PTNAAVRHSSISSTQESSRL-PPNDQSLDSMAAPSVENTGPQSQ 305
NP Q + P + P HS ISS S + PP L S AAP ++ P Q
Sbjct: 670 NPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLPPTHQ 729
Query: 306 PVLLHVP 312
P+ H+P
Sbjct: 730 PISHHIP 736
Score = 76 (31.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G ++ TI+ KY
Sbjct: 879 NFEELIHLEERLGNVNRGASQGTIERCTYPHKY 911
>TAIR|locus:2203063 [details] [associations]
symbol:AT1G36950 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00516752
RefSeq:NP_174888.1 UniGene:At.51981 ProteinModelPortal:F4I3A0
SMR:F4I3A0 EnsemblPlants:AT1G36950.1 GeneID:840604
KEGG:ath:AT1G36950 Uniprot:F4I3A0
Length = 226
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 547 DINDRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXX 606
DI D ++++R+D D+M+YE+LL L +G ++ + I + K S
Sbjct: 22 DI-DPYQELRMDTDHMTYEQLLQLCNSMGYENSSVKASNIDRCFRNTKPSEFQSLADKIC 80
Query: 607 XXXXXXXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
G G L+CGH+FH + +K W++ K CP+C+ TA
Sbjct: 81 CICQDRFQRRAG--VGKLNCGHNFHINSVKPWILTKKQCPVCQKTA 124
>TAIR|locus:2075641 [details] [associations]
symbol:AT3G47180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HOGENOM:HOG000239779 EMBL:AL133292 EMBL:BT011767 EMBL:BT012388
IPI:IPI00534401 PIR:T45654 RefSeq:NP_190302.1 UniGene:At.35834
ProteinModelPortal:Q9SD55 SMR:Q9SD55 EnsemblPlants:AT3G47180.1
GeneID:823871 KEGG:ath:AT3G47180 TAIR:At3g47180 eggNOG:NOG276691
InParanoid:Q9SD55 OMA:NEFLEDQ PhylomeDB:Q9SD55
ProtClustDB:CLSN2714450 Genevestigator:Q9SD55 Uniprot:Q9SD55
Length = 210
Score = 137 (53.3 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 32/93 (34%), Positives = 45/93 (48%)
Query: 557 LDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYN 616
+D D +SYEEL+AL + IG + GLT I L Y S + +
Sbjct: 112 IDPDQLSYEELIALGDFIGVENRGLTPIEISTCLNASTYVFS-HNKNEIDRCVVCQMEFE 170
Query: 617 DGEDTGILH-CGHDFHTSCIKQWLMHKNLCPIC 648
+ E +L C H +H+ CI +WL K +CPIC
Sbjct: 171 ERESLVVLRPCDHPYHSECITKWLETKKICPIC 203
>MGI|MGI:2444521 [details] [associations]
symbol:Rnf165 "ring finger protein 165" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 MGI:MGI:2444521
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 UniGene:Mm.23293 GeneTree:ENSGT00670000097625
CTD:494470 eggNOG:NOG243435 OMA:FSHQLQT EMBL:AC102135 EMBL:AK133955
IPI:IPI00266063 RefSeq:NP_001157976.1 ProteinModelPortal:E9QAU8
SMR:E9QAU8 PRIDE:E9QAU8 Ensembl:ENSMUST00000026494 GeneID:225743
KEGG:mmu:225743 HOGENOM:HOG000171096 HOVERGEN:HBG101911
NextBio:377780 Bgee:E9QAU8 Uniprot:E9QAU8
Length = 347
Score = 143 (55.4 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 35/98 (35%), Positives = 47/98 (47%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ S G
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336
>RGD|1560744 [details] [associations]
symbol:Rnf165 "ring finger protein 165" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1560744 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 OMA:FSHQLQT IPI:IPI00367219
Ensembl:ENSRNOT00000028929 Uniprot:E9PSS3
Length = 348
Score = 143 (55.4 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 35/98 (35%), Positives = 47/98 (47%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ S G
Sbjct: 240 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 299
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 300 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 337
>RGD|1310097 [details] [associations]
symbol:Rnf111 "ring finger protein 111" species:10116 "Rattus
norvegicus" [GO:0000209 "protein polyubiquitination"
evidence=IEA;ISO] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007389 "pattern specification process"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0030511 "positive regulation of transforming growth factor beta
receptor signaling pathway" evidence=IEA;ISO] [GO:0030579
"ubiquitin-dependent SMAD protein catabolic process"
evidence=IEA;ISO] [GO:0031398 "positive regulation of protein
ubiquitination" evidence=IEA;ISO] [GO:0032184 "SUMO polymer
binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0046332 "SMAD
binding" evidence=IPI] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 RGD:1310097 GO:GO:0005737
GO:GO:0045893 GO:GO:0043234 GO:GO:0005730 GO:GO:0046872
GO:GO:0008270 GO:GO:0030511 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0031398 GO:GO:0004842 GO:GO:0007389 GO:GO:0000209
GO:GO:0030579 EMBL:CH474041 CTD:54778 KO:K10635 OMA:CDDSQKQ
GeneTree:ENSGT00670000097625 OrthoDB:EOG4MSCXR IPI:IPI00370163
RefSeq:NP_001100306.1 UniGene:Rn.82537 Ensembl:ENSRNOT00000017918
GeneID:300813 KEGG:rno:300813 UCSC:RGD:1310097 NextBio:647579
Uniprot:D4A9T1
Length = 987
Score = 96 (38.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 944 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 976
Score = 76 (31.8 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G ++ TI+ KY
Sbjct: 872 NFEELIHLEERLGNVNRGASQGTIERCTYPHKY 904
Score = 71 (30.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 250 PSNQQKVMPYAQFPTNAAVRHSSISSTQESSRL-PPNDQSLDSMAAPSVENTGPQSQPVL 308
P V+P+ P +A HS IS+ S + PP L S AAP ++ P QP+
Sbjct: 671 PPQVDYVIPH---PVHAF--HSQISTHAASHPVAPPPPTHLGSTAAPIPQHLPPAHQPIS 725
Query: 309 LHVP 312
H+P
Sbjct: 726 HHIP 729
>TAIR|locus:2126906 [details] [associations]
symbol:AT4G00070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001841 Pfam:PF13639
SMART:SM00184 EMBL:CP002687 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 IPI:IPI00541050 RefSeq:NP_191918.4
UniGene:At.50310 ProteinModelPortal:F4JH02 SMR:F4JH02 DNASU:828211
EnsemblPlants:AT4G00070.1 GeneID:828211 KEGG:ath:AT4G00070
Uniprot:F4JH02
Length = 179
Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 550 DRHRDMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXX 609
D ++++R+D D+M+YE+LL L +G ++G+ I L+ K S
Sbjct: 88 DPYQELRMDTDHMTYEQLLQLCNNMGYENSGVKASNIDRCLRNTKPSEF--QSLADKICC 145
Query: 610 XXXXXYNDGEDTGILHCGHDFHTSCIKQWLMHK 642
+ G L+CGH+FH +C+K W++ K
Sbjct: 146 ICQDGFQKRAGVGKLNCGHNFHVNCVKPWILTK 178
>TAIR|locus:2145086 [details] [associations]
symbol:AT5G52140 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:NOG243435
EMBL:DQ447065 IPI:IPI00526226 RefSeq:NP_200027.2 UniGene:At.55498
ProteinModelPortal:Q1PDK3 SMR:Q1PDK3 EnsemblPlants:AT5G52140.1
GeneID:835290 KEGG:ath:AT5G52140 TAIR:At5g52140
HOGENOM:HOG000124786 InParanoid:Q1PDK3 OMA:DDIQETH PhylomeDB:Q1PDK3
ProtClustDB:CLSN2920553 ArrayExpress:Q1PDK3 Genevestigator:Q1PDK3
Uniprot:Q1PDK3
Length = 280
Score = 138 (53.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/106 (33%), Positives = 47/106 (44%)
Query: 554 DMRLDVDNMSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGS----------XX 603
D D +NM+YEEL L + +G+V GL++E I +RL+ KY S
Sbjct: 171 DENNDPENMTYEELTELGDSVGDVGKGLSQERI-SRLRTHKYGTKTKSWYCLHMKKKFVA 229
Query: 604 XXXXXXXXXXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
Y G+ L C H +H CI QWL +C ICK
Sbjct: 230 DDSQCSICLMEYAKGDKITTLPCKHIYHKDCISQWLKQNKVCCICK 275
>ZFIN|ZDB-GENE-091118-64 [details] [associations]
symbol:rnf165a "ring finger protein 165a"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
ZFIN:ZDB-GENE-091118-64 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00670000097625
EMBL:CU466271 IPI:IPI01007348 Ensembl:ENSDART00000097796
Bgee:E9QHW9 Uniprot:E9QHW9
Length = 311
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 39/108 (36%), Positives = 48/108 (44%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKYS----ISLG------SXXXXXXXXXXX 612
SYEELL LE+R+G+VS G + TI+ KY + L
Sbjct: 204 SYEELLQLEDRLGSVSRGAIQTTIERFTFPHKYKKRKPLDLKFCENDEESDVDEKCTICL 263
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKT---TALSTSS 657
DGED L C H FH +C+ QWL CPIC+ T LS S
Sbjct: 264 SMLEDGEDVRRLPCMHLFHQACVDQWLATSRKCPICRVDIQTQLSPES 311
>UNIPROTKB|F1RPS5 [details] [associations]
symbol:RNF165 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 EMBL:FP015922
Ensembl:ENSSSCT00000004974 Uniprot:F1RPS5
Length = 327
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/98 (34%), Positives = 46/98 (46%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G
Sbjct: 219 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKEEGEESDTDEKCTIC 278
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 279 LSLLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 316
>UNIPROTKB|I3LPH2 [details] [associations]
symbol:RNF165 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 OMA:FSHQLQT EMBL:FP015922
Ensembl:ENSSSCT00000022369 Uniprot:I3LPH2
Length = 329
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/98 (34%), Positives = 46/98 (46%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G
Sbjct: 221 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKEEGEESDTDEKCTIC 280
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 281 LSLLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 318
>UNIPROTKB|Q6ZSG1 [details] [associations]
symbol:RNF165 "RING finger protein 165" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC018931 EMBL:AK127467 EMBL:AK122819
EMBL:AC015959 EMBL:AC021763 IPI:IPI00161541 RefSeq:NP_001243687.1
RefSeq:NP_689683.2 UniGene:Hs.501114 ProteinModelPortal:Q6ZSG1
SMR:Q6ZSG1 IntAct:Q6ZSG1 STRING:Q6ZSG1 DMDM:74762404 PRIDE:Q6ZSG1
Ensembl:ENST00000269439 Ensembl:ENST00000543885 GeneID:494470
KEGG:hsa:494470 UCSC:uc002lby.1 CTD:494470 GeneCards:GC18P043914
HGNC:HGNC:31696 neXtProt:NX_Q6ZSG1 PharmGKB:PA134972127
eggNOG:NOG243435 HOGENOM:HOG000154155 HOVERGEN:HBG093904
InParanoid:Q6ZSG1 OMA:FSHQLQT OrthoDB:EOG4J6RRC PhylomeDB:Q6ZSG1
GenomeRNAi:494470 NextBio:111870 ArrayExpress:Q6ZSG1 Bgee:Q6ZSG1
CleanEx:HS_RNF165 Genevestigator:Q6ZSG1 GermOnline:ENSG00000141622
Uniprot:Q6ZSG1
Length = 346
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 34/98 (34%), Positives = 46/98 (46%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 335
>UNIPROTKB|F1PHU2 [details] [associations]
symbol:RNF165 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 OMA:FSHQLQT EMBL:AAEX03005372
EMBL:AAEX03005373 Ensembl:ENSCAFT00000027965 Uniprot:F1PHU2
Length = 347
Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 34/98 (34%), Positives = 46/98 (46%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKEEGEESDTDEKCTIC 298
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336
>UNIPROTKB|F1MJP2 [details] [associations]
symbol:RNF165 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 OMA:FSHQLQT EMBL:DAAA02056918
IPI:IPI00695048 Ensembl:ENSBTAT00000001499 Uniprot:F1MJP2
Length = 350
Score = 139 (54.0 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/98 (34%), Positives = 46/98 (46%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
SYEELL LE+R+GNV+ G + TI+ ++ K+++ G
Sbjct: 242 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKEEGEESDTDEKCTIC 301
Query: 613 -XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
DGED L C H FH C+ QWL CPIC+
Sbjct: 302 LSLLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 339
>UNIPROTKB|F1P2A5 [details] [associations]
symbol:RNF111 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 EMBL:AADN02040362 IPI:IPI00820139
Ensembl:ENSGALT00000006632 ArrayExpress:F1P2A5 Uniprot:F1P2A5
Length = 880
Score = 134 (52.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 563 SYEELLALEERIGNVSTGLTEETIK-----NRLKQQKYSISLGSXXXXXXXXXXX----- 612
++EEL+ LEER+GNV+ G T+ TI+ ++ K++K
Sbjct: 773 NFEELIHLEERLGNVNRGATQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICL 832
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 833 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 869
Score = 57 (25.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 249 NPSNQQKVMPYAQFPTNAAVR--HSSISSTQESSRLPPNDQS--LDSMAAPSVENTGPQS 304
NP Q + P + V H SISS S +PP + L + AAP ++
Sbjct: 563 NPPPQPQPPPQVDYVIPHPVHPFHPSISSHASSHPVPPPPPTHPLANAAAPIPQHLPAAH 622
Query: 305 QPVLLHVP 312
Q + H+P
Sbjct: 623 QAISHHIP 630
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 250 PSNQQKVMPYAQFPTNAAVRHSSISSTQESSRLPPNDQSLDSMAAPSVENTGPQS 304
P+ +V P Q ++A+ SS S+++++S N + AAP ++ P S
Sbjct: 289 PTTSARVEP--QVVSSASSNSSSTSTSEQASDAASNVSTSQPSAAPETTSSLPNS 341
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 264 TNAAVRHSSISS-TQESSRLPPNDQSLDSMAAPSVENTGPQSQP 306
T+A V +SS + SS ++Q+ D AA +V + P + P
Sbjct: 291 TSARVEPQVVSSASSNSSSTSTSEQASD--AASNVSTSQPSAAP 332
>UNIPROTKB|E1BSQ8 [details] [associations]
symbol:RNF111 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000209 "protein polyubiquitination" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007389 "pattern specification process" evidence=IEA]
[GO:0030511 "positive regulation of transforming growth factor beta
receptor signaling pathway" evidence=IEA] [GO:0030579
"ubiquitin-dependent SMAD protein catabolic process" evidence=IEA]
[GO:0031398 "positive regulation of protein ubiquitination"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 GO:GO:0005737 GO:GO:0045893 GO:GO:0043234
GO:GO:0005730 GO:GO:0046872 GO:GO:0008270 GO:GO:0030511
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0031398 GO:GO:0004842
GO:GO:0000209 GO:GO:0030579 OMA:CDDSQKQ
GeneTree:ENSGT00670000097625 EMBL:AADN02040362 IPI:IPI00592682
ProteinModelPortal:E1BSQ8 Ensembl:ENSGALT00000034463
ArrayExpress:E1BSQ8 Uniprot:E1BSQ8
Length = 976
Score = 96 (38.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+GED L C H FH C+ QWL+ CPIC+
Sbjct: 933 EGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 965
Score = 80 (33.2 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 563 SYEELLALEERIGNVSTGLTEETIKNRLKQQKY 595
++EEL+ LEER+GNV+ G T+ TI+ KY
Sbjct: 861 NFEELIHLEERLGNVNRGATQGTIERCTYPHKY 893
Score = 57 (25.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 20/68 (29%), Positives = 29/68 (42%)
Query: 249 NPSNQQKVMPYAQFPTNAAVR--HSSISSTQESSRLPPNDQS--LDSMAAPSVENTGPQS 304
NP Q + P + V H SISS S +PP + L + AAP ++
Sbjct: 651 NPPPQPQPPPQVDYVIPHPVHPFHPSISSHASSHPVPPPPPTHPLANAAAPIPQHLPAAH 710
Query: 305 QPVLLHVP 312
Q + H+P
Sbjct: 711 QAISHHIP 718
Score = 53 (23.7 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 250 PSNQQKVMPYAQFPTNAAVRHSSISSTQESSRLPPNDQSLDSMAAPSVENTGPQS 304
P+ +V P Q ++A+ SS S+++++S N + AAP ++ P S
Sbjct: 378 PTTSARVEP--QVVSSASSNSSSTSTSEQASDAASNVSTSQPSAAPETTSSLPNS 430
Score = 43 (20.2 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 264 TNAAVRHSSISS-TQESSRLPPNDQSLDSMAAPSVENTGPQSQP 306
T+A V +SS + SS ++Q+ D AA +V + P + P
Sbjct: 380 TSARVEPQVVSSASSNSSSTSTSEQASD--AASNVSTSQPSAAP 421
>UNIPROTKB|F1NRC6 [details] [associations]
symbol:RLIM "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0060816 "random
inactivation of X chromosome" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043433
GO:GO:0004842 GeneTree:ENSGT00700000104290 OMA:RNFGESD
GO:GO:0060816 EMBL:AADN02013542 IPI:IPI00573322
Ensembl:ENSGALT00000012569 Uniprot:F1NRC6
Length = 593
Score = 116 (45.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N L + + G Y +G
Sbjct: 498 LSLAQFFLLNEDDDDQPRGLTKEQIDN-LAMRNF----GESDALKTCSVCITEYTEGNKL 552
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 553 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 588
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 33/97 (34%), Positives = 41/97 (42%)
Query: 177 GTSSYFQHAESSACPA-------VSAS--YNGGSSLSISDPSGQVNSGRGLGVRGPVRDG 227
G SYF +++S A P+ V AS NGGS S S+ S V+SG V +G
Sbjct: 415 GELSYFMYSDSDADPSGPTPNQNVDASEPQNGGSGSS-SNESTDVSSGE-------VFEG 466
Query: 228 LPEWPVAGNAERSRRNYR--VRINPSNQQKVMPYAQF 262
E A R RN R V S + AQF
Sbjct: 467 SNEGGSTSGARREGRNTRGSVTFEESGSLPFLSLAQF 503
Score = 45 (20.9 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 42 SRPPDNMLSPAGTRTTMTYVNSMSHEQQMSTAWSLGEPSSHGPQNKVTHDERRTQH 97
SR P+ + A T + + +N +S + S + + H N+ R QH
Sbjct: 212 SRSPEQRRTRARTDRSRSPINPVSEAPRRSHHNTSSQTFDHSAVNEAEGSSRTRQH 267
>UNIPROTKB|Q7L0R7 [details] [associations]
symbol:RNF44 "RING finger protein 44" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5540 HSSP:Q9H0F5 HOGENOM:HOG000231638
HOVERGEN:HBG059283 CTD:22838 OMA:CSAQQLP OrthoDB:EOG498V0T
EMBL:AB029023 EMBL:BC039833 EMBL:BC063297 EMBL:AL834489
IPI:IPI00470579 RefSeq:NP_055716.1 UniGene:Hs.434888
ProteinModelPortal:Q7L0R7 SMR:Q7L0R7 IntAct:Q7L0R7
PhosphoSite:Q7L0R7 DMDM:74758994 PRIDE:Q7L0R7
Ensembl:ENST00000274811 GeneID:22838 KEGG:hsa:22838 UCSC:uc003mek.1
GeneCards:GC05M175886 HGNC:HGNC:19180 HPA:HPA038981
neXtProt:NX_Q7L0R7 PharmGKB:PA38819 InParanoid:Q7L0R7
PhylomeDB:Q7L0R7 ChiTaRS:RNF44 GenomeRNAi:22838 NextBio:43277
ArrayExpress:Q7L0R7 Bgee:Q7L0R7 CleanEx:HS_RNF44
Genevestigator:Q7L0R7 Uniprot:Q7L0R7
Length = 432
Score = 127 (49.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 327 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 384
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 385 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
Score = 46 (21.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 449 NQTPPHSVPLSP-EEMVLSSGAGNQRH--HPSYPRSASRLERQDGVLGFPHPL 498
+Q PP P P EE S+ AG HP+ +S ++ + V P PL
Sbjct: 55 SQQPPSRPPHLPVEERRASAPAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPL 107
>UNIPROTKB|B4DYE0 [details] [associations]
symbol:RNF44 "cDNA FLJ61466, highly similar to Homo sapiens
ring finger protein 44 (RNF44), mRNA" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC091934
HOVERGEN:HBG059283 UniGene:Hs.434888 HGNC:HGNC:19180 ChiTaRS:RNF44
EMBL:AC010316 EMBL:AK302385 IPI:IPI01010913 SMR:B4DYE0
Ensembl:ENST00000537487 Uniprot:B4DYE0
Length = 351
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 246 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 303
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 304 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 343
>ZFIN|ZDB-GENE-030131-8693 [details] [associations]
symbol:si:dkey-20n3.1 "si:dkey-20n3.1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
ZFIN:ZDB-GENE-030131-8693 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00670000097625
EMBL:CR936846 IPI:IPI00511731 RefSeq:XP_695200.4 UniGene:Dr.159457
UniGene:Dr.76333 Ensembl:ENSDART00000089233
Ensembl:ENSDART00000139241 GeneID:566820 KEGG:dre:566820
NextBio:20888388 Uniprot:E7FDX7
Length = 673
Score = 124 (48.7 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 555 MRLDVDN---MSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXX 610
+ LDVD+ +YE LL L ER+G GLT+ I+ +L +++ S
Sbjct: 566 LELDVDDGEVENYEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPS-NHQSEQTLCVV 623
Query: 611 XXXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 624 CMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 665
Score = 49 (22.3 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 19/76 (25%), Positives = 24/76 (31%)
Query: 408 PPSAPTWVPHPNPYQYPRRFSELIR--RXXXXXXXXXXXXXXXNQTPPHSVPLSPEEMVL 465
PPS P+P+P+ +P R R R PPH P
Sbjct: 236 PPSRRPH-PYPHPHYHPERCHTPARHRRSPPVRRQRGRRDRLSRHHPPHGSP-------- 286
Query: 466 SSGAGNQRHHPSYPRS 481
G HP +P S
Sbjct: 287 GGGQDENYRHPPHPHS 302
Score = 47 (21.6 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 270 HSSISSTQ-ESSRLPPNDQSLDSMAAPSVENTGPQSQPVLLHVP-MFPQNLQP 320
H S Q E+ R PP+ SL P +P H P + P+ L P
Sbjct: 283 HGSPGGGQDENYRHPPHPHSLHPYGQPPSHPPPGLDEPRAFHPPTLSPRLLHP 335
Score = 45 (20.9 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 194 SASYNGGSSLSISDPSGQVNSGRGLGVRGP 223
S Y+GG +S+P+G NSG G G P
Sbjct: 101 SGFYHGG----LSNPNG--NSGSGGGALSP 124
Score = 43 (20.2 bits), Expect = 9.8e-05, Sum P(3) = 9.8e-05
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 9 GSLPETLSFDHGSTSTSAVDQQMFWNNMRNPPESRPPDNMLSPAGTR 55
G+L +H QQ F + + RPP +MLSP R
Sbjct: 120 GALSPAGGINHHHLHHHHQQQQQFGAH-GHTENLRPPGSMLSPGAHR 165
Score = 38 (18.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 186 ESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGP 223
++ A PA GG SL + SG + S P
Sbjct: 31 DAGAQPAEYGGLEGGHSLGSTRLSGALESSSAASFSPP 68
>FB|FBgn0037705 [details] [associations]
symbol:mura "murashka" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008355
"olfactory learning" evidence=IMP] [GO:0007611 "learning or memory"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0048149 "behavioral response to ethanol" evidence=IMP]
[GO:2001020 "regulation of response to DNA damage stimulus"
evidence=IGI] [GO:0007616 "long-term memory" evidence=IMP]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
EMBL:AE014297 GO:GO:0008355 GO:GO:0046872 GO:GO:0008270
GO:GO:0007616 Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7
GeneTree:ENSGT00670000097625 UniGene:Dm.11144 GeneID:41145
KEGG:dme:Dmel_CG9381 CTD:41145 FlyBase:FBgn0037705 GenomeRNAi:41145
NextBio:822398 EMBL:BT125858 RefSeq:NP_731367.2 SMR:Q9VHC2
STRING:Q9VHC2 EnsemblMetazoa:FBtr0082118 UCSC:CG9381-RC
InParanoid:Q9VHC2 OMA:ARLAPCH Uniprot:Q9VHC2
Length = 1173
Score = 116 (45.9 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 563 SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+YE LL+L ER+G GLT I ++L K++ + + + +
Sbjct: 1033 NYEALLSLAERLGEAKPRGLTRNEI-DQLPSYKFNPEVHNGDQSSCVVCMCD-FELRQLL 1090
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+L C H+FH C+ +WL CPIC+ A
Sbjct: 1091 RVLPCSHEFHAKCVDKWLRSNRTCPICRGNA 1121
Score = 61 (26.5 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 168 GN-VENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRD 226
GN + N + G Y + CPA S Y+G + G N+G G R + D
Sbjct: 466 GNGIVNGNTNGPPDYMNYRRG-VCPAQSRDYSGNGN-------GN-NNGHGHNGRRYMSD 516
Query: 227 GL--PEWPVAG--NAERSRRNYRVRINPSN 252
L P + G N+ +RNY R N +N
Sbjct: 517 NLNNPSSSMNGLINSGHHQRNYNDR-NLNN 545
Score = 53 (23.7 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 51/231 (22%), Positives = 78/231 (33%)
Query: 168 GNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVR-GP--V 224
G G S++QH S S GG L PSG SG L + GP +
Sbjct: 574 GGSGGGGYGRNGSHYQHMAYGNNNGASTS-TGGPGLMGELPSGSGLSGSSLSLNNGPGGL 632
Query: 225 RDGLPEWP---VAGNAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRHSSISSTQESSR 281
P ++G + R ++ Q+ P + P V S+ Q+
Sbjct: 633 NSDSPSRKRRRISGRPPNGPQPQH-RCPMAHMQQGSPPLRRPRLRDVATSTQQQQQQYGH 691
Query: 282 LPPNDQSLDSMAAPSVENTGPQSQPVLLHVPMF---PQNLQPFRWDKXXXXXXXXXXXXN 338
+ Q PS + QP +VP P ++Q WD +
Sbjct: 692 QVHHPQQ-QQQQPPSNYHPMHHHQPQPHYVPQQQVPPPHVQRSPWDLGSSGGSSGGATSS 750
Query: 339 GARDRDVQREEARPRIMG-RNILENPMFIPAP-----DLRNLVRSPANRSL 383
+ +Q+ +A P+ + + P P P DL NL + P N L
Sbjct: 751 SSVGPILQQVQAPPQPPSHQQAVGYPQAPPQPASLMVDL-NLNQVPVNLQL 800
Score = 49 (22.3 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 22 TSTSAVDQQMFWNNMRNPP-ESRPPD--NMLS-----PAGTRTTMTYVNSMSHEQQMSTA 73
T++++++ F N NP S P D N+ S P G+ +T + +SM +QQ
Sbjct: 369 TNSNSINATTF--NSTNPTTNSNPTDVVNVNSCTDIIPYGSSSTSSSASSMLPQQQQHQI 426
Query: 74 WSLGEP-SSH----GPQNK--VTHDERR 94
+ P +SH GP N + H+ +R
Sbjct: 427 NNASAPINSHSQGQGPGNSPNLGHNHQR 454
>UNIPROTKB|F1S3A0 [details] [associations]
symbol:RNF44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 OMA:CSAQQLP EMBL:FP101981
Ensembl:ENSSSCT00000015355 Uniprot:F1S3A0
Length = 437
Score = 125 (49.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L ++
Sbjct: 332 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFHPD-SHQSEQTLCVVCF 389
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 390 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 429
Score = 46 (21.3 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 450 QTPPHSVPLSPEEM-VLSSGAGNQRH-HPSYPRSASRLERQDGVLGFPHPL 498
Q PP L EE L+ G+ R HP+ +S ++ + V P PL
Sbjct: 62 QPPPRPAHLPVEERRALAPAGGSPRMLHPTSQQSPFMVDLHEQVHQGPVPL 112
>UNIPROTKB|F1P629 [details] [associations]
symbol:RNF44 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 OMA:CSAQQLP EMBL:AAEX03002976
Ensembl:ENSCAFT00000026405 Uniprot:F1P629
Length = 441
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 336 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 393
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 394 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 433
>UNIPROTKB|E2RSZ0 [details] [associations]
symbol:RLIM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060816 "random inactivation of X chromosome"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043433
GO:GO:0004842 KO:K16271 GeneTree:ENSGT00700000104290 CTD:51132
OMA:RNFGESD GO:GO:0060816 EMBL:AAEX03026523 RefSeq:XP_859444.2
ProteinModelPortal:E2RSZ0 Ensembl:ENSCAFT00000027241 GeneID:491965
KEGG:cfa:491965 NextBio:20864655 Uniprot:E2RSZ0
Length = 625
Score = 116 (45.9 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 530 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 584
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 585 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 620
Score = 58 (25.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 163 RKALEGNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQV----NSGRGL 218
R G+ +SS G +SS + SS+ + S+S + SS S+ S +V N G
Sbjct: 444 RNGRGGSGGSSSSGSSSSSSSSSSSSSSSSSSSSPSSSSSGESSETSSEVFEGSNEGSSS 503
Query: 219 -GVRGPVRDGLPEWPV 233
G G R+G PV
Sbjct: 504 SGSSGARREGRHRAPV 519
Score = 55 (24.4 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 27/91 (29%), Positives = 38/91 (41%)
Query: 176 GGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAG 235
GG+SS + SS S+S + SS S S PS +SG V +G E +
Sbjct: 451 GGSSSSGSSSSSS-----SSSSSSSSSSSSSSPSSS-SSGESSETSSEVFEGSNEGSSSS 504
Query: 236 NAERSRRNYR----VRINPSNQQKVMPYAQF 262
+ +RR R V + S + AQF
Sbjct: 505 GSSGARREGRHRAPVTFDESGSLPFLSLAQF 535
Score = 50 (22.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 36/182 (19%), Positives = 63/182 (34%)
Query: 211 QVNSGRGLGVRGPVRDGLPEWPVAGNAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRH 270
++N R G + P + P +G + R NP ++ P + P+ + R+
Sbjct: 140 EINVNRNNGSQNPENENEPSARRSGGENTDNSSQRQVENPRSE----PTSTRPSRSE-RN 194
Query: 271 SSISSTQESSRLPPNDQSLDSMAAPSVENTGPQSQPVLLHVPMFPQNLQPFRWDKXXXXX 330
S+ + T E + P Q +P T +++ P+ P + P R
Sbjct: 195 STEALTGEVA--PTRGQRRARSRSPDHRRTRARAERS--RSPLHPMSEIPRRSHHSISSQ 250
Query: 331 XXXXXXXNGARDRDVQREEA--RPRIMGRNILENPMFIPAPDLRNLVRSPANRSLAGGNI 388
N R R +I G ++L +F A RN + + A
Sbjct: 251 TFEHPLVNETEGSSRTRHHVTLRQQISGPDLLSRGLFA-ASGTRNASQGAGSSDTASSGE 309
Query: 389 ST 390
ST
Sbjct: 310 ST 311
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 23 STSAVDQQMFWNNMRNPPESRPPDNMLSPAGTRTTMTYVNSMSHEQQMSTAWSLGEPSSH 82
ST A+ ++ + SR PD+ + A + + ++ MS + S S+ +
Sbjct: 195 STEALTGEVAPTRGQRRARSRSPDHRRTRARAERSRSPLHPMSEIPRRSHH-SISSQTFE 253
Query: 83 GPQNKVTHDERRTQH 97
P T RT+H
Sbjct: 254 HPLVNETEGSSRTRH 268
>UNIPROTKB|Q9NVW2 [details] [associations]
symbol:RLIM "E3 ubiquitin-protein ligase RLIM" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043433 "negative
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=NAS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0060816
"random inactivation of X chromosome" evidence=IDA] [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISS] [GO:0016567 "protein ubiquitination"
evidence=ISS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005737 GO:GO:0017053
GO:GO:0003714 GO:GO:0045892 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0000122 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0006511 GO:GO:0043433 eggNOG:COG5540 GO:GO:0004842
EMBL:CH471104 KO:K16271 EMBL:AF155109 EMBL:AJ271670 EMBL:AK001334
EMBL:AL513007 EMBL:BC013357 IPI:IPI00060628 RefSeq:NP_057204.2
RefSeq:NP_899196.1 UniGene:Hs.653288 ProteinModelPortal:Q9NVW2
SMR:Q9NVW2 IntAct:Q9NVW2 MINT:MINT-233446 STRING:Q9NVW2
PhosphoSite:Q9NVW2 DMDM:143811451 PaxDb:Q9NVW2 PRIDE:Q9NVW2
DNASU:51132 Ensembl:ENST00000332687 Ensembl:ENST00000349225
GeneID:51132 KEGG:hsa:51132 UCSC:uc004ebu.3 CTD:51132
GeneCards:GC0XM073803 HGNC:HGNC:13429 HPA:HPA018895 MIM:300379
neXtProt:NX_Q9NVW2 PharmGKB:PA164725373 HOGENOM:HOG000273881
InParanoid:Q9NVW2 OMA:RNFGESD OrthoDB:EOG48SGSW PhylomeDB:Q9NVW2
ChiTaRS:RLIM GenomeRNAi:51132 NextBio:53967 Bgee:Q9NVW2
CleanEx:HS_RNF12 Genevestigator:Q9NVW2 GermOnline:ENSG00000131263
GO:GO:0060816 Uniprot:Q9NVW2
Length = 624
Score = 116 (45.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 583
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 584 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 619
Score = 58 (25.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 168 GNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGL-GVRGPVRD 226
G+ SS +SS + SS+ + S+S G SS + SD N G G G R+
Sbjct: 452 GSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGARRE 511
Query: 227 GLPEWPV 233
G PV
Sbjct: 512 GRHRAPV 518
Score = 53 (23.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 32/158 (20%), Positives = 55/158 (34%)
Query: 236 NAERSRRNYRVRINPSNQQKVMPYAQFPTNAAVRHSSISSTQESSRLPPN-DQSLDSMAA 294
N +RR+ + ++Q++V T+A S +ST+ + +PP Q +
Sbjct: 156 NEPSARRSSGENVENNSQRQVENPRSESTSARPSRSERNSTEALTEVPPTRGQRRARSRS 215
Query: 295 PSVENTGPQSQPVLLHVPMFPQNLQPFRWDKXXXXXXXXXXXXNGARDRDVQREEA--RP 352
P T +++ P+ P + P R N R R
Sbjct: 216 PDHRRTRARAERS--RSPLHPMSEIPRRSHHSISSQTFEHPLVNETEGSSRTRHHVTLRQ 273
Query: 353 RIMGRNILENPMFIPAPDLRNLVRSPANRSLAGGNIST 390
+I G +L +F A RN + + A ST
Sbjct: 274 QISGPELLSRGLFA-ASGTRNASQGAGSSDTAASGEST 310
Score = 50 (22.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 24/89 (26%), Positives = 36/89 (40%)
Query: 174 SVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPV 233
S GG+SS + SS+ + S+S + SS S S SG +S + +G
Sbjct: 449 SGGGSSS---GSSSSSSSSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGS 505
Query: 234 AGNAERSRRNYRVRINPSNQQKVMPYAQF 262
+G R V + S + AQF
Sbjct: 506 SGARREGRHRAPVTFDESGSLPFLSLAQF 534
>UNIPROTKB|F1N0G7 [details] [associations]
symbol:RNF44 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00670000097625 CTD:22838 OMA:CSAQQLP
EMBL:DAAA02020035 IPI:IPI00688854 RefSeq:NP_001179642.1
UniGene:Bt.6313 ProteinModelPortal:F1N0G7
Ensembl:ENSBTAT00000023598 GeneID:531968 KEGG:bta:531968
NextBio:20875566 Uniprot:F1N0G7
Length = 432
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L ++
Sbjct: 327 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFHPD-SHQSEQTLCVVCF 384
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FHT C+ +WL CPIC+ A
Sbjct: 385 SDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADA 424
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 450 QTPPHSVPLSPEEMVLSSGAGNQRH--HPSYPRSASRLERQDGVLGFPHPL 498
Q PP L EE S+ AG HP +S ++ + V P PL
Sbjct: 57 QLPPRPAHLPVEERRASAPAGGSPRMLHPVSQQSPFMVDLHEQVHQGPVPL 107
>UNIPROTKB|I3LB70 [details] [associations]
symbol:LOC100738472 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00700000104290 EMBL:FP340171
Ensembl:ENSSSCT00000030994 Uniprot:I3LB70
Length = 577
Score = 116 (45.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 482 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 536
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 537 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 572
Score = 54 (24.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 185 AESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAGNAERSRRNY 244
+ SS + S+S + SS S S PS +SG V +G E + + +RR
Sbjct: 407 SSSSGSSSSSSSSSSSSSSSSSSPSSS-SSGESSETSSEVFEGSNEGSSSSGSSGARREG 465
Query: 245 R----VRINPSNQQKVMPYAQF 262
R V + S + AQF
Sbjct: 466 RHRAPVTFDESGSLPFLSLAQF 487
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 168 GNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGL-GVRGPVRD 226
G +S +SS + SS+ + S+S +G SS + S+ N G G G R+
Sbjct: 405 GGSSSSGSSSSSSSSSSSSSSSSSSPSSSSSGESSETSSEVFEGSNEGSSSSGSSGARRE 464
Query: 227 GLPEWPV 233
G PV
Sbjct: 465 GRHRAPV 471
>RGD|1307212 [details] [associations]
symbol:Rnf44 "ring finger protein 44" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1307212 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540 HSSP:Q9H0F5
HOGENOM:HOG000231638 HOVERGEN:HBG059283 CTD:22838 OrthoDB:EOG498V0T
EMBL:BC098030 IPI:IPI00364712 RefSeq:NP_001019966.1
UniGene:Rn.21345 ProteinModelPortal:Q4V7B8 SMR:Q4V7B8
PhosphoSite:Q4V7B8 GeneID:361212 KEGG:rno:361212 UCSC:RGD:1307212
NextBio:675562 Genevestigator:Q4V7B8 Uniprot:Q4V7B8
Length = 350
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 245 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 302
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 303 SDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 342
>UNIPROTKB|Q4V7B8 [details] [associations]
symbol:Rnf44 "RING finger protein 44" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1307212 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540 HSSP:Q9H0F5
HOGENOM:HOG000231638 HOVERGEN:HBG059283 CTD:22838 OrthoDB:EOG498V0T
EMBL:BC098030 IPI:IPI00364712 RefSeq:NP_001019966.1
UniGene:Rn.21345 ProteinModelPortal:Q4V7B8 SMR:Q4V7B8
PhosphoSite:Q4V7B8 GeneID:361212 KEGG:rno:361212 UCSC:RGD:1307212
NextBio:675562 Genevestigator:Q4V7B8 Uniprot:Q4V7B8
Length = 350
Score = 121 (47.7 bits), Expect = 0.00025, P = 0.00025
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 245 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 302
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 303 SDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 342
>ZFIN|ZDB-GENE-060929-604 [details] [associations]
symbol:rnf44 "ring finger protein 44" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-060929-604 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540
GeneTree:ENSGT00670000097625 HOGENOM:HOG000231638
HOVERGEN:HBG059283 EMBL:BC124246 IPI:IPI00801239
RefSeq:NP_001070092.1 UniGene:Dr.72465 ProteinModelPortal:Q08CG8
SMR:Q08CG8 Ensembl:ENSDART00000099235 GeneID:767686 KEGG:dre:767686
CTD:22838 InParanoid:Q08CG8 OMA:CSAQQLP OrthoDB:EOG498V0T
NextBio:20918075 ArrayExpress:Q08CG8 Bgee:Q08CG8 Uniprot:Q08CG8
Length = 448
Score = 128 (50.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G GLT+ I+ +L ++++
Sbjct: 343 LDVDDVEMENYEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNLE-NHQSEQTLCVVCF 400
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 401 SDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADA 440
Score = 38 (18.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 406 VHPPSAPTWVPHPNPYQYP 424
V P P PHP P P
Sbjct: 199 VAPHQPPPHPPHPPPPHLP 217
>UNIPROTKB|F1RPK6 [details] [associations]
symbol:LOC100738472 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
KO:K16271 GeneTree:ENSGT00700000104290 CTD:51132 OMA:RNFGESD
EMBL:CU856210 RefSeq:XP_003135236.1 RefSeq:XP_003360418.1
RefSeq:XP_003484178.1 UniGene:Ssc.9094 Ensembl:ENSSSCT00000013579
GeneID:100511426 GeneID:100738472 KEGG:ssc:100511426
KEGG:ssc:100738472 Uniprot:F1RPK6
Length = 623
Score = 116 (45.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 528 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 582
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 583 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 618
Score = 54 (24.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 185 AESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVRDGLPEWPVAGNAERSRRNY 244
+ SS + S+S + SS S S PS +SG V +G E + + +RR
Sbjct: 453 SSSSGSSSSSSSSSSSSSSSSSSPSSS-SSGESSETSSEVFEGSNEGSSSSGSSGARREG 511
Query: 245 R----VRINPSNQQKVMPYAQF 262
R V + S + AQF
Sbjct: 512 RHRAPVTFDESGSLPFLSLAQF 533
Score = 52 (23.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 168 GNVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGL-GVRGPVRD 226
G +S +SS + SS+ + S+S +G SS + S+ N G G G R+
Sbjct: 451 GGSSSSGSSSSSSSSSSSSSSSSSSPSSSSSGESSETSSEVFEGSNEGSSSSGSSGARRE 510
Query: 227 GLPEWPV 233
G PV
Sbjct: 511 GRHRAPV 517
>MGI|MGI:2145310 [details] [associations]
symbol:Rnf44 "ring finger protein 44" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 MGI:MGI:2145310
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5540 HSSP:Q9H0F5
GeneTree:ENSGT00670000097625 HOGENOM:HOG000231638
HOVERGEN:HBG059283 CTD:22838 ChiTaRS:RNF44 EMBL:AK129290
EMBL:AK147349 EMBL:AK160090 EMBL:AK160115 EMBL:AK171943
EMBL:BC017630 EMBL:BC035548 IPI:IPI00453833 IPI:IPI00828733
IPI:IPI00828814 RefSeq:NP_001139497.1 RefSeq:NP_001139498.1
RefSeq:NP_001139499.1 RefSeq:NP_598825.2 UniGene:Mm.25366
ProteinModelPortal:Q3UHJ8 SMR:Q3UHJ8 PhosphoSite:Q3UHJ8
PRIDE:Q3UHJ8 Ensembl:ENSMUST00000037422 Ensembl:ENSMUST00000128257
Ensembl:ENSMUST00000134862 Ensembl:ENSMUST00000150806
Ensembl:ENSMUST00000177950 GeneID:105239 KEGG:mmu:105239
UCSC:uc007qot.2 UCSC:uc007qou.2 UCSC:uc007qow.2 InParanoid:Q3UHJ8
NextBio:357544 Bgee:Q3UHJ8 CleanEx:MM_RNF44 Genevestigator:Q3UHJ8
Uniprot:Q3UHJ8
Length = 407
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 557 LDVDNM---SYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXX 612
LDVD++ +YE LL L ER+G+ GLT+ I+ +L +++
Sbjct: 302 LDVDDVEMENYEALLNLAERLGDAKPRGLTKADIE-QLPSYRFNPD-SHQSEQTLCVVCF 359
Query: 613 XXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ + +L C H+FH C+ +WL CPIC+ A
Sbjct: 360 SDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADA 399
>MGI|MGI:1342291 [details] [associations]
symbol:Rlim "ring finger protein, LIM domain interacting"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IDA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=IGI] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0060816 "random inactivation of X
chromosome" evidence=ISO;IDA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 MGI:MGI:1342291
Prosite:PS00518 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0000122 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0006511 GO:GO:0043433 eggNOG:COG5540
GO:GO:0004842 EMBL:CH466564 KO:K16271 GeneTree:ENSGT00700000104290
CTD:51132 HOGENOM:HOG000273881 OrthoDB:EOG48SGSW GO:GO:0060816
EMBL:AF069992 EMBL:AK013207 EMBL:AK029295 EMBL:AL805911
EMBL:BC012960 IPI:IPI00123915 RefSeq:NP_035406.3 UniGene:Mm.427762
UniGene:Mm.490660 ProteinModelPortal:Q9WTV7 SMR:Q9WTV7
DIP:DIP-46445N STRING:Q9WTV7 PhosphoSite:Q9WTV7 PRIDE:Q9WTV7
Ensembl:ENSMUST00000070705 Ensembl:ENSMUST00000121153 GeneID:19820
KEGG:mmu:19820 UCSC:uc009tzz.1 InParanoid:Q9CYY2 NextBio:297281
Bgee:Q9WTV7 CleanEx:MM_RNF12 Genevestigator:Q9WTV7
GermOnline:ENSMUSG00000056537 Uniprot:Q9WTV7
Length = 600
Score = 118 (46.6 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 505 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 559
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ LS+ +
Sbjct: 560 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGN 595
Score = 53 (23.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 26/66 (39%), Positives = 32/66 (48%)
Query: 169 NVENSSVGGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGLGVRGPVR-DG 227
N SS GG SS + SS+ P+ S+S G SS S S+ + G G GP R DG
Sbjct: 437 NGRGSSGGGNSS---GSSSSSSPSPSSS--GESSESSSEMFEGSSEG---GSSGPSRRDG 488
Query: 228 LPEWPV 233
PV
Sbjct: 489 RHRAPV 494
Score = 37 (18.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 21/74 (28%), Positives = 29/74 (39%)
Query: 21 STSTSAVDQQMFWNNMRNPPESRPPDNMLSPAGTRTTMTYVNSMSHEQQMSTAWSLGEPS 80
S TS+ D N+ + RPP +L R V + Q+ S A S
Sbjct: 288 SQGTSSSDTGS--NSESSGSGQRPPTIVLDLQVRR-----VRPGEYRQRDSIA-SRTRSR 339
Query: 81 SHGPQNKVTHDERR 94
S P N VT++ R
Sbjct: 340 SQAPNNTVTYESER 353
>UNIPROTKB|E1BBI7 [details] [associations]
symbol:RLIM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060816 "random inactivation of X chromosome"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043433
GO:GO:0004842 KO:K16271 GeneTree:ENSGT00700000104290 CTD:51132
OMA:RNFGESD GO:GO:0060816 EMBL:DAAA02072549 IPI:IPI00705444
RefSeq:NP_001179251.1 UniGene:Bt.25074 ProteinModelPortal:E1BBI7
Ensembl:ENSBTAT00000020757 GeneID:539871 KEGG:bta:539871
NextBio:20878271 Uniprot:E1BBI7
Length = 611
Score = 116 (45.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 26/96 (27%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 516 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 570
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ L++ +
Sbjct: 571 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 606
Score = 52 (23.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 176 GGTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRGL-GVRGPVRDGLPEWPV 233
GG+SS + SS+ P S+S NG SS + S+ N G G G R+G PV
Sbjct: 451 GGSSS--SGSSSSSSP--SSSSNGESSETSSEVFEGSNEGSSSSGSSGARREGRHRAPV 505
>TAIR|locus:2139044 [details] [associations]
symbol:AT4G12190 species:3702 "Arabidopsis thaliana"
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002687
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
IPI:IPI00546160 RefSeq:NP_192956.1 UniGene:At.65368
ProteinModelPortal:F4JQK3 SMR:F4JQK3 DNASU:826827
EnsemblPlants:AT4G12190.1 GeneID:826827 KEGG:ath:AT4G12190
OMA:PRDITRM Uniprot:F4JQK3
Length = 71
Score = 97 (39.2 bits), Expect = 0.00052, P = 0.00052
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 626 CGHDFHTSCIKQWLMHKNLCPICKT 650
C H FH C+ +WL KN CP+C+T
Sbjct: 43 CSHVFHNGCLLEWLKRKNTCPLCRT 67
>WB|WBGene00021842 [details] [associations]
symbol:Y54E10BR.3 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005680
"anaphase-promoting complex" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00530000062967 eggNOG:NOG235630 KO:K11982
EMBL:FO081636 RefSeq:NP_491091.1 ProteinModelPortal:Q9N3D1
SMR:Q9N3D1 STRING:Q9N3D1 PaxDb:Q9N3D1 EnsemblMetazoa:Y54E10BR.3
GeneID:171875 KEGG:cel:CELE_Y54E10BR.3 UCSC:Y54E10BR.3 CTD:171875
WormBase:Y54E10BR.3 HOGENOM:HOG000017337 InParanoid:Q9N3D1
OMA:FHRPCIE NextBio:873059 Uniprot:Q9N3D1
Length = 304
Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 556 RLDVDNMSYEELLALEERIGNVST----GLTEETIKNRLKQQKYSISLGSXXXXXXXXXX 611
R D+++ + +E+LA + G G TE +K L +K ++
Sbjct: 185 RADLES-AMQEILAQFQAAGGEGGQRQGGFTEAEVKEYLPMKK--VTQEHIDNGAQCTTC 241
Query: 612 XXXYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICK 649
+ ED G L C H FH CI+ WL KN CP+C+
Sbjct: 242 FDTFKLDEDVGALDCNHIFHRPCIEPWLKTKNSCPVCR 279
>UNIPROTKB|D4A8S6 [details] [associations]
symbol:Rlim "Protein Rlim" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1559832 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 IPI:IPI00947970 Ensembl:ENSRNOT00000067009
ArrayExpress:D4A8S6 Uniprot:D4A8S6
Length = 597
Score = 118 (46.6 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 502 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 556
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ LS+ +
Sbjct: 557 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGN 592
Score = 48 (22.0 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 177 GTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRG 217
G SYF +++S + P SAS + ++ +G+ +SG G
Sbjct: 406 GELSYFMYSDSDSEP--SASVSSRNTERAESRNGRGSSGAG 444
>RGD|1559832 [details] [associations]
symbol:Rlim "ring finger protein, LIM domain interacting"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=ISO] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=ISO] [GO:0060816 "random inactivation of
X chromosome" evidence=ISO] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 RGD:1559832 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006511 GO:GO:0043433
eggNOG:COG5540 GO:GO:0004842 EMBL:CH473969 HOVERGEN:HBG009886
KO:K16271 GeneTree:ENSGT00700000104290 CTD:51132
HOGENOM:HOG000273881 OMA:RNFGESD OrthoDB:EOG48SGSW GO:GO:0060816
EMBL:BC097491 IPI:IPI00362010 RefSeq:NP_001020063.1
RefSeq:XP_003752129.1 UniGene:Rn.85539 Ensembl:ENSRNOT00000003782
GeneID:100910646 GeneID:317241 KEGG:rno:100910646 KEGG:rno:317241
UCSC:RGD:1559832 InParanoid:Q4V889 NextBio:671483
Genevestigator:Q4V889 Uniprot:Q4V889
Length = 603
Score = 118 (46.6 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 27/96 (28%), Positives = 40/96 (41%)
Query: 562 MSYEELLALEERIGNVSTGLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYNDGEDT 621
+S + L E + GLT+E I N + S G Y +G
Sbjct: 508 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMR-----SFGENDALKTCSVCITEYTEGNKL 562
Query: 622 GILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTSS 657
L C H++H CI +WL + CPIC+ LS+ +
Sbjct: 563 RKLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGN 598
Score = 48 (22.0 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 177 GTSSYFQHAESSACPAVSASYNGGSSLSISDPSGQVNSGRG 217
G SYF +++S + P SAS + ++ +G+ +SG G
Sbjct: 412 GELSYFMYSDSDSEP--SASVSSRNTERAESRNGRGSSGAG 450
>UNIPROTKB|Q5XIX1 [details] [associations]
symbol:Rnf38 "Rnf38 protein" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:621856 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5540 EMBL:CH473962
GeneTree:ENSGT00670000097625 HOGENOM:HOG000231638
HOVERGEN:HBG059283 OrthoDB:EOG4TB4B7 EMBL:BC083548 IPI:IPI00758440
UniGene:Rn.82699 SMR:Q5XIX1 STRING:Q5XIX1
Ensembl:ENSRNOT00000060203 InParanoid:Q5XIX1 Genevestigator:Q5XIX1
Uniprot:Q5XIX1
Length = 432
Score = 118 (46.6 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 558 DVDNMSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYN 616
+V+N YE LL L ER+G GLT+ I+ +L +++ S +
Sbjct: 333 EVEN--YEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPS-NHQSEQTLCVVCMCDFE 388
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ +L C H+FH C+ +WL CPIC+ A
Sbjct: 389 SRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 424
Score = 45 (20.9 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 269 RHSSISSTQESSRLP-PNDQSLDSMAAPSVENTGPQSQPVLLHVP 312
RH+SIS + LP Q+++ A N P+ H P
Sbjct: 51 RHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPP 95
Score = 37 (18.1 bits), Expect = 0.00070, Sum P(3) = 0.00070
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 363 PMFIPAPDLRNLVRSPANRSLAGGNISTPGNVXXXXXXXXXXXVHPPSAPTWVPHPNPY 421
P P+ L+ L P ++ ++ G P P PT+ P PY
Sbjct: 250 PTLPPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPVPPPTYHPSLLPY 308
>MGI|MGI:1920719 [details] [associations]
symbol:Rnf38 "ring finger protein 38" species:10090 "Mus
musculus" [GO:0008150 "biological_process" evidence=ND] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0036126 "sperm flagellum"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
MGI:MGI:1920719 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540
GeneTree:ENSGT00670000097625 CTD:152006 HOGENOM:HOG000231638
HOVERGEN:HBG059283 OMA:FLLHPPH ChiTaRS:RNF38 EMBL:AK029650
EMBL:BC060730 EMBL:BC062976 IPI:IPI00221948 IPI:IPI00515598
RefSeq:NP_780410.2 UniGene:Mm.262859 ProteinModelPortal:Q8BI21
SMR:Q8BI21 PhosphoSite:Q8BI21 PRIDE:Q8BI21
Ensembl:ENSMUST00000098098 GeneID:73469 KEGG:mmu:73469
InParanoid:Q8BI21 NextBio:338343 Bgee:Q8BI21 CleanEx:MM_RNF38
Genevestigator:Q8BI21 GermOnline:ENSMUSG00000035696 Uniprot:Q8BI21
Length = 518
Score = 118 (46.6 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 558 DVDNMSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYN 616
+V+N YE LL L ER+G GLT+ I+ +L +++ S +
Sbjct: 419 EVEN--YEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPS-NHQSEQTLCVVCMCDFE 474
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ +L C H+FH C+ +WL CPIC+ A
Sbjct: 475 SRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 510
Score = 45 (20.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 269 RHSSISSTQESSRLP-PNDQSLDSMAAPSVENTGPQSQPVLLHVP 312
RH+SIS + LP Q+++ A N P+ H P
Sbjct: 137 RHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPP 181
>UNIPROTKB|F1LNX1 [details] [associations]
symbol:Rnf38 "Protein Rnf38" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:621856 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 IPI:IPI00949289 Ensembl:ENSRNOT00000060201
ArrayExpress:F1LNX1 Uniprot:F1LNX1
Length = 464
Score = 118 (46.6 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 558 DVDNMSYEELLALEERIGNVST-GLTEETIKNRLKQQKYSISLGSXXXXXXXXXXXXXYN 616
+V+N YE LL L ER+G GLT+ I+ +L +++ S +
Sbjct: 365 EVEN--YEALLNLAERLGEAKPRGLTKADIE-QLPSYRFNPS-NHQSEQTLCVVCMCDFE 420
Query: 617 DGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652
+ +L C H+FH C+ +WL CPIC+ A
Sbjct: 421 SRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADA 456
Score = 45 (20.9 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 269 RHSSISSTQESSRLP-PNDQSLDSMAAPSVENTGPQSQPVLLHVP 312
RH+SIS + LP Q+++ A N P+ H P
Sbjct: 83 RHNSISQDENYHHLPYAQQQAIEEPRAFHPPNVSPRLLHPAAHPP 127
Score = 37 (18.1 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 13/59 (22%), Positives = 20/59 (33%)
Query: 363 PMFIPAPDLRNLVRSPANRSLAGGNISTPGNVXXXXXXXXXXXVHPPSAPTWVPHPNPY 421
P P+ L+ L P ++ ++ G P P PT+ P PY
Sbjct: 282 PTLPPSAPLQFLTHDPLHQEVSFGVPYPPFMPRRLTGRSRYRSQQPVPPPTYHPSLLPY 340
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 657 575 0.00080 120 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 60
No. of states in DFA: 623 (66 KB)
Total size of DFA: 331 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.52u 0.12s 51.64t Elapsed: 00:00:03
Total cpu time: 51.53u 0.12s 51.65t Elapsed: 00:00:03
Start: Tue May 21 02:13:08 2013 End: Tue May 21 02:13:11 2013