Query 006188
Match_columns 657
No_of_seqs 266 out of 1819
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 125.6 6.2 77 577-654 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.4 7.2E-14 2.4E-18 115.8 3.8 66 590-656 9-74 (75)
3 2ep4_A Ring finger protein 24; 99.4 1.6E-13 5.5E-18 113.1 5.6 54 602-655 12-65 (74)
4 2kiz_A E3 ubiquitin-protein li 99.4 2.6E-13 8.8E-18 110.4 5.8 55 601-655 10-64 (69)
5 2ect_A Ring finger protein 126 99.4 2.3E-13 7.9E-18 113.2 4.6 55 601-655 11-65 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.7E-18 106.2 3.8 51 603-653 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.3 1.3E-12 4.6E-17 116.0 6.4 51 604-654 24-94 (114)
8 2ecm_A Ring finger and CHY zin 99.3 2.3E-12 7.7E-17 100.0 4.8 51 603-653 3-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.3 3.4E-12 1.1E-16 108.2 5.4 54 601-654 11-76 (81)
10 3ng2_A RNF4, snurf, ring finge 99.3 2.1E-12 7.1E-17 105.0 3.4 53 603-655 8-64 (71)
11 2ea6_A Ring finger protein 4; 99.3 2.7E-12 9.4E-17 103.4 4.0 53 602-654 12-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.2 3.7E-12 1.3E-16 114.2 4.5 54 599-652 31-99 (106)
13 2d8t_A Dactylidin, ring finger 99.2 3.9E-12 1.3E-16 104.4 2.7 49 602-653 12-60 (71)
14 2xeu_A Ring finger protein 4; 99.2 5.4E-12 1.8E-16 100.2 3.3 52 604-655 2-57 (64)
15 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.8E-16 102.0 4.8 50 602-654 12-62 (72)
16 2ct2_A Tripartite motif protei 99.2 2.4E-11 8.4E-16 102.4 6.0 54 601-654 11-68 (88)
17 2csy_A Zinc finger protein 183 99.2 1.6E-11 5.5E-16 103.0 4.2 49 602-653 12-60 (81)
18 1chc_A Equine herpes virus-1 r 99.2 1.3E-11 4.3E-16 99.9 3.5 50 603-654 3-52 (68)
19 2d8s_A Cellular modulator of i 99.1 2.5E-11 8.4E-16 103.7 4.6 55 600-655 10-71 (80)
20 2ecn_A Ring finger protein 141 99.1 8.4E-12 2.9E-16 101.7 1.3 50 602-655 12-61 (70)
21 2yur_A Retinoblastoma-binding 99.1 2.5E-11 8.7E-16 100.6 4.1 50 602-654 12-64 (74)
22 2ysl_A Tripartite motif-contai 99.1 3E-11 1E-15 98.8 4.1 51 602-655 17-70 (73)
23 2ecy_A TNF receptor-associated 99.1 4.2E-11 1.4E-15 96.7 4.7 50 603-655 13-63 (66)
24 4ayc_A E3 ubiquitin-protein li 99.1 1.7E-11 5.8E-16 113.3 2.6 48 604-654 52-99 (138)
25 4a0k_B E3 ubiquitin-protein li 99.1 6.5E-12 2.2E-16 114.7 -0.5 55 598-652 41-110 (117)
26 2ecw_A Tripartite motif-contai 99.1 7.3E-11 2.5E-15 98.3 5.4 50 602-654 16-71 (85)
27 1t1h_A Gspef-atpub14, armadill 99.1 5.7E-11 1.9E-15 98.7 4.6 49 603-654 6-55 (78)
28 2ecv_A Tripartite motif-contai 99.1 9E-11 3.1E-15 97.8 4.6 50 602-654 16-71 (85)
29 2ysj_A Tripartite motif-contai 99.0 1.3E-10 4.5E-15 92.8 4.9 44 602-648 17-63 (63)
30 3lrq_A E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 105.0 2.1 48 604-654 21-70 (100)
31 2egp_A Tripartite motif-contai 99.0 4.1E-11 1.4E-15 99.3 1.4 50 602-654 9-65 (79)
32 3ztg_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 99.2 4.0 48 602-652 10-60 (92)
33 2ckl_A Polycomb group ring fin 99.0 1.2E-10 4.2E-15 102.8 3.7 49 603-654 13-62 (108)
34 1jm7_A BRCA1, breast cancer ty 99.0 2.1E-10 7.2E-15 101.0 5.1 47 605-654 21-70 (112)
35 4ap4_A E3 ubiquitin ligase RNF 99.0 1.3E-10 4.4E-15 104.2 3.5 52 603-654 5-60 (133)
36 2y43_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 101.0 3.4 48 604-654 21-69 (99)
37 2ecj_A Tripartite motif-contai 99.0 2E-10 6.7E-15 89.7 4.0 44 602-648 12-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.0 2.2E-10 7.4E-15 103.6 3.8 48 604-654 51-99 (124)
39 2ckl_B Ubiquitin ligase protei 98.9 3.7E-10 1.3E-14 106.9 3.7 47 604-653 53-101 (165)
40 1g25_A CDK-activating kinase a 98.9 7.9E-10 2.7E-14 88.9 4.4 51 604-654 2-55 (65)
41 1z6u_A NP95-like ring finger p 98.9 5.5E-10 1.9E-14 105.3 4.0 48 605-655 78-126 (150)
42 2ct0_A Non-SMC element 1 homol 98.9 7.1E-10 2.4E-14 93.7 4.0 50 603-654 13-64 (74)
43 2kr4_A Ubiquitin conjugation f 98.9 8.8E-10 3E-14 94.4 4.2 49 603-654 12-60 (85)
44 3hct_A TNF receptor-associated 98.9 6.9E-10 2.4E-14 99.7 2.8 50 602-654 15-65 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 3.3E-10 1.1E-14 101.0 0.5 48 603-653 13-61 (115)
46 4ap4_A E3 ubiquitin ligase RNF 98.9 8.7E-10 3E-14 98.8 3.2 52 603-654 70-125 (133)
47 2kre_A Ubiquitin conjugation f 98.8 1.3E-09 4.5E-14 96.4 3.9 49 603-654 27-75 (100)
48 1wgm_A Ubiquitin conjugation f 98.8 1.7E-09 5.9E-14 95.3 4.1 49 603-654 20-69 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.8 1.8E-09 6.3E-14 96.3 3.2 47 605-654 23-70 (116)
50 2c2l_A CHIP, carboxy terminus 98.8 3E-09 1E-13 106.4 4.9 48 603-653 206-254 (281)
51 2vje_A E3 ubiquitin-protein li 98.8 2.3E-09 8E-14 87.1 2.9 48 603-653 6-56 (64)
52 2y1n_A E3 ubiquitin-protein li 98.7 3.8E-09 1.3E-13 113.7 4.3 48 604-654 331-379 (389)
53 1bor_A Transcription factor PM 98.7 2.8E-09 9.4E-14 84.2 1.8 47 603-655 4-50 (56)
54 2vje_B MDM4 protein; proto-onc 98.7 3.8E-09 1.3E-13 85.6 2.5 48 603-653 5-55 (63)
55 1e4u_A Transcriptional repress 98.7 8.3E-09 2.8E-13 87.5 4.3 52 602-654 8-62 (78)
56 3knv_A TNF receptor-associated 98.7 2E-09 6.9E-14 100.5 0.5 48 602-652 28-76 (141)
57 1jm7_B BARD1, BRCA1-associated 98.7 2.6E-09 8.7E-14 95.9 0.6 46 604-654 21-67 (117)
58 2yu4_A E3 SUMO-protein ligase 98.7 8.4E-09 2.9E-13 89.7 3.2 46 603-651 5-59 (94)
59 4ic3_A E3 ubiquitin-protein li 98.6 5.3E-09 1.8E-13 87.0 0.8 43 605-654 24-67 (74)
60 2f42_A STIP1 homology and U-bo 98.6 2.8E-08 9.7E-13 96.8 4.8 50 602-654 103-153 (179)
61 3hcs_A TNF receptor-associated 98.5 2.3E-08 7.9E-13 94.8 2.8 50 602-654 15-65 (170)
62 2ecg_A Baculoviral IAP repeat- 98.5 6.2E-08 2.1E-12 80.5 3.0 42 606-654 26-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.4 3.7E-08 1.3E-12 104.4 1.0 52 602-653 305-372 (381)
64 2ea5_A Cell growth regulator w 98.4 1.4E-07 4.7E-12 77.7 3.5 47 601-654 11-58 (68)
65 1wim_A KIAA0161 protein; ring 98.4 8E-08 2.7E-12 83.0 1.9 48 604-651 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.4 1.1E-07 3.9E-12 77.0 2.0 46 606-654 4-50 (61)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.3 3.4E-07 1.2E-11 74.1 3.7 48 603-653 4-58 (60)
68 3htk_C E3 SUMO-protein ligase 98.3 2.3E-07 8E-12 95.2 2.5 49 603-653 179-231 (267)
69 2yho_A E3 ubiquitin-protein li 98.3 1.8E-07 6.2E-12 79.1 1.3 42 605-653 18-60 (79)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.4E-07 8.2E-12 98.4 0.1 43 604-653 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.8E-05 6.1E-10 70.4 3.3 46 607-654 3-49 (101)
72 3nw0_A Non-structural maintena 97.3 7.9E-05 2.7E-09 75.3 3.2 48 604-653 179-228 (238)
73 2ko5_A Ring finger protein Z; 95.6 0.0038 1.3E-07 55.0 1.8 48 603-655 26-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.035 1.2E-06 47.8 2.8 34 605-638 3-36 (101)
75 2lri_C Autoimmune regulator; Z 89.2 0.24 8.1E-06 40.6 3.1 48 603-653 10-61 (66)
76 3m62_A Ubiquitin conjugation f 89.1 0.36 1.2E-05 57.4 5.8 51 601-654 887-938 (968)
77 1wil_A KIAA1045 protein; ring 87.7 0.4 1.4E-05 41.5 3.6 36 602-638 12-47 (89)
78 3i2d_A E3 SUMO-protein ligase 86.8 0.29 1E-05 52.5 2.8 48 605-654 249-300 (371)
79 4fo9_A E3 SUMO-protein ligase 82.1 0.67 2.3E-05 49.6 3.0 48 605-654 215-266 (360)
80 2l5u_A Chromodomain-helicase-D 80.5 0.66 2.3E-05 37.2 1.8 47 602-651 8-58 (61)
81 1we9_A PHD finger family prote 80.3 0.31 1E-05 39.0 -0.3 53 602-654 3-61 (64)
82 1f62_A Transcription factor WS 78.7 0.75 2.6E-05 35.1 1.5 45 607-651 2-50 (51)
83 2k16_A Transcription initiatio 75.6 0.43 1.5E-05 39.3 -0.7 52 602-653 15-70 (75)
84 1mm2_A MI2-beta; PHD, zinc fin 75.3 0.46 1.6E-05 38.1 -0.6 49 602-653 6-58 (61)
85 2cs3_A Protein C14ORF4, MY039 72.6 3.3 0.00011 35.7 3.9 40 603-642 13-53 (93)
86 1wep_A PHF8; structural genomi 69.1 3.3 0.00011 34.5 3.2 47 605-652 12-64 (79)
87 2yql_A PHD finger protein 21A; 68.1 0.36 1.2E-05 37.9 -2.7 47 601-650 5-55 (56)
88 1wem_A Death associated transc 67.6 1.5 5.1E-05 36.3 0.8 49 606-655 17-74 (76)
89 2ysm_A Myeloid/lymphoid or mix 65.4 1.3 4.6E-05 39.0 0.1 39 602-640 4-42 (111)
90 1wew_A DNA-binding family prot 63.2 1.6 5.6E-05 36.4 0.2 52 604-656 15-77 (78)
91 2lv9_A Histone-lysine N-methyl 62.2 2.1 7.1E-05 37.4 0.7 46 606-652 29-77 (98)
92 1fp0_A KAP-1 corepressor; PHD 62.0 2.4 8.1E-05 36.8 1.0 49 601-652 21-73 (88)
93 2ku3_A Bromodomain-containing 59.7 2.3 7.8E-05 35.2 0.5 50 601-650 12-65 (71)
94 2l43_A N-teminal domain from h 58.3 2.2 7.6E-05 36.6 0.2 50 603-652 23-76 (88)
95 1weu_A Inhibitor of growth fam 57.0 4.2 0.00014 35.4 1.7 46 605-654 36-88 (91)
96 2e6r_A Jumonji/ARID domain-con 56.7 0.63 2.2E-05 40.3 -3.5 49 602-650 13-65 (92)
97 1xwh_A Autoimmune regulator; P 55.9 0.78 2.7E-05 37.2 -2.9 46 603-651 6-55 (66)
98 3v43_A Histone acetyltransfera 55.7 12 0.00042 33.0 4.6 33 604-636 4-42 (112)
99 2vpb_A Hpygo1, pygopus homolog 55.2 8.1 0.00028 31.4 3.0 35 602-636 5-41 (65)
100 1z60_A TFIIH basal transcripti 54.4 3.5 0.00012 33.3 0.7 43 606-648 16-58 (59)
101 1wee_A PHD finger family prote 53.6 0.79 2.7E-05 37.7 -3.3 52 604-656 15-71 (72)
102 2d8v_A Zinc finger FYVE domain 53.1 5.8 0.0002 32.8 1.8 34 602-639 5-39 (67)
103 1weo_A Cellulose synthase, cat 53.0 15 0.00053 32.0 4.5 50 604-653 15-69 (93)
104 2kgg_A Histone demethylase jar 52.7 4 0.00014 31.5 0.8 43 607-649 4-52 (52)
105 2puy_A PHD finger protein 21A; 51.4 1.5 5.2E-05 34.7 -1.9 47 603-652 3-53 (60)
106 2yt5_A Metal-response element- 50.8 6.1 0.00021 31.4 1.7 52 602-653 3-63 (66)
107 2zet_C Melanophilin; complex, 48.5 14 0.00049 34.8 4.0 47 603-650 66-116 (153)
108 1zbd_B Rabphilin-3A; G protein 47.6 7.8 0.00027 35.8 2.0 34 603-636 53-88 (134)
109 1wen_A Inhibitor of growth fam 47.2 6.5 0.00022 32.4 1.3 46 604-653 15-67 (71)
110 3v43_A Histone acetyltransfera 46.8 3.8 0.00013 36.3 -0.2 45 606-650 62-111 (112)
111 2ri7_A Nucleosome-remodeling f 46.5 3.4 0.00012 38.9 -0.6 47 603-650 6-58 (174)
112 1wev_A Riken cDNA 1110020M19; 46.2 1.6 5.3E-05 37.5 -2.7 50 604-653 15-74 (88)
113 3o70_A PHD finger protein 13; 45.7 2.2 7.7E-05 34.9 -1.7 48 603-651 17-67 (68)
114 2lbm_A Transcriptional regulat 45.0 20 0.00069 33.5 4.4 47 602-651 60-117 (142)
115 2ysm_A Myeloid/lymphoid or mix 43.6 2.5 8.6E-05 37.1 -1.9 50 607-656 56-109 (111)
116 3mpx_A FYVE, rhogef and PH dom 43.5 4.9 0.00017 42.5 0.0 50 603-652 373-430 (434)
117 1z2q_A LM5-1; membrane protein 42.4 13 0.00044 31.3 2.4 39 600-638 16-55 (84)
118 3ask_A E3 ubiquitin-protein li 40.5 5.4 0.00018 40.1 -0.3 47 605-651 174-225 (226)
119 2yw8_A RUN and FYVE domain-con 39.8 12 0.00041 31.4 1.8 38 601-638 15-53 (82)
120 3ql9_A Transcriptional regulat 39.4 23 0.00078 32.7 3.8 49 601-652 53-112 (129)
121 1x4u_A Zinc finger, FYVE domai 38.9 15 0.00053 30.8 2.4 38 601-638 10-48 (84)
122 3shb_A E3 ubiquitin-protein li 38.6 3 0.0001 35.2 -2.1 44 607-650 28-76 (77)
123 1y02_A CARP2, FYVE-ring finger 38.5 2.9 9.8E-05 38.2 -2.4 46 604-649 18-64 (120)
124 3t7l_A Zinc finger FYVE domain 38.0 14 0.00047 31.6 2.0 37 603-639 18-55 (90)
125 1joc_A EEA1, early endosomal a 37.5 13 0.00046 33.6 1.9 38 601-638 65-103 (125)
126 2e6s_A E3 ubiquitin-protein li 36.5 5.6 0.00019 33.4 -0.7 46 605-650 26-76 (77)
127 2xb1_A Pygopus homolog 2, B-ce 35.8 14 0.00048 32.5 1.7 49 605-653 3-63 (105)
128 2o35_A Hypothetical protein DU 35.7 13 0.00046 33.0 1.5 11 630-640 43-53 (105)
129 1wfk_A Zinc finger, FYVE domai 35.6 17 0.00059 31.0 2.2 37 602-638 6-43 (88)
130 3fyb_A Protein of unknown func 35.3 14 0.00047 32.9 1.5 11 630-640 42-52 (104)
131 2pv0_B DNA (cytosine-5)-methyl 35.0 18 0.0006 39.1 2.6 48 601-651 89-148 (386)
132 1dvp_A HRS, hepatocyte growth 32.6 15 0.00051 36.0 1.5 35 604-638 160-195 (220)
133 4gne_A Histone-lysine N-methyl 31.8 16 0.00056 32.5 1.4 44 601-650 11-61 (107)
134 3asl_A E3 ubiquitin-protein li 31.7 5.8 0.0002 32.6 -1.4 45 607-651 20-69 (70)
135 3zyq_A Hepatocyte growth facto 31.7 14 0.00048 36.5 1.1 35 604-638 163-198 (226)
136 2kwj_A Zinc finger protein DPF 30.9 1.9 6.6E-05 38.4 -4.8 48 606-653 59-110 (114)
137 1vfy_A Phosphatidylinositol-3- 30.3 22 0.00074 29.1 1.9 33 605-637 11-44 (73)
138 1m3v_A FLIN4, fusion of the LI 29.9 37 0.0013 29.8 3.5 49 606-654 33-81 (122)
139 4g9i_A Hydrogenase maturation 28.3 19 0.00064 42.1 1.5 50 603-652 104-188 (772)
140 1x64_A Alpha-actinin-2 associa 27.9 54 0.0019 27.0 4.0 41 603-654 23-63 (89)
141 3ttc_A HYPF, transcriptional r 27.0 20 0.00067 41.2 1.4 50 603-652 15-99 (657)
142 2vnf_A ING 4, P29ING4, inhibit 26.2 5.1 0.00018 31.9 -2.6 41 607-650 11-58 (60)
143 2gmg_A Hypothetical protein PF 26.1 9.9 0.00034 34.0 -1.0 26 623-653 70-95 (105)
144 2kwj_A Zinc finger protein DPF 26.0 28 0.00095 30.8 1.9 33 606-638 2-41 (114)
145 3vth_A Hydrogenase maturation 23.9 21 0.00072 41.7 0.8 49 604-652 110-193 (761)
146 3a1b_A DNA (cytosine-5)-methyl 23.7 39 0.0013 32.2 2.5 48 600-651 74-134 (159)
147 2jvx_A NF-kappa-B essential mo 23.4 18 0.00061 25.1 0.1 13 642-654 3-15 (28)
148 1x62_A C-terminal LIM domain p 22.9 44 0.0015 26.9 2.4 38 604-652 14-51 (79)
149 3kv5_D JMJC domain-containing 22.8 11 0.00037 41.7 -1.7 47 605-651 36-88 (488)
150 2cu8_A Cysteine-rich protein 2 22.4 39 0.0013 26.9 2.0 40 605-654 9-48 (76)
151 3c6w_A P28ING5, inhibitor of g 22.3 7.1 0.00024 31.0 -2.5 42 605-650 9-57 (59)
152 1iml_A CRIP, cysteine rich int 22.1 27 0.00091 27.9 0.9 45 604-652 26-71 (76)
153 2co8_A NEDD9 interacting prote 21.9 57 0.0019 26.6 2.9 42 603-654 13-54 (82)
154 1wd2_A Ariadne-1 protein homol 20.9 13 0.00044 29.8 -1.2 39 604-642 5-48 (60)
155 2dar_A PDZ and LIM domain prot 20.7 46 0.0016 27.5 2.1 38 605-653 25-62 (90)
156 3pwf_A Rubrerythrin; non heme 20.3 31 0.0011 32.8 1.1 24 621-651 139-162 (170)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=125.57 Aligned_cols=77 Identities=27% Similarity=0.590 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHhhhhcccccccCCCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 577 VSTGLTEETIKNRLKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 577 vstgLsee~I~k~L~~~ky~~~~~~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
...+++++.+. .++..++.........+..|+||+++|..++.+..++|||.||..||.+||+.+.+||+||+.+.+
T Consensus 13 ~~~~~s~~~i~-~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESID-ALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHH-TSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHH-hCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34566666664 466666654444556678899999999998888889999999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.2e-14 Score=115.80 Aligned_cols=66 Identities=29% Similarity=0.753 Sum_probs=54.0
Q ss_pred hhhcccccccCCCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCCC
Q 006188 590 LKQQKYSISLGSQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALSTS 656 (657)
Q Consensus 590 L~~~ky~~~~~~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~tS 656 (657)
++..++.. .....++..|+||+++|..++.+..++|+|+||..||.+|++.+.+||+||+.+.+.+
T Consensus 9 lp~~~~~~-~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 9 LPSYRFNP-NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCCEEBCS-SSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred CCcEEecC-ccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 34444432 2234566789999999999988889999999999999999999999999999987754
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=113.07 Aligned_cols=54 Identities=31% Similarity=0.896 Sum_probs=48.9
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
...+..|+||+++|..++.+..++|+|+||..||.+|++.+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345678999999999999888899999999999999999999999999998754
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=110.40 Aligned_cols=55 Identities=36% Similarity=0.862 Sum_probs=48.8
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
.......|+||++.|..++.+..++|||+||..||.+|++.+.+||+||+.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3455678999999999888888999999999999999999999999999987653
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.38 E-value=2.3e-13 Score=113.20 Aligned_cols=55 Identities=35% Similarity=0.817 Sum_probs=49.1
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
....+..|+||++.|..++.+..++|||+||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3455778999999999988888899999999999999999999999999988653
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.37 E-value=2e-13 Score=106.20 Aligned_cols=51 Identities=37% Similarity=1.024 Sum_probs=46.4
Q ss_pred CCCCccccccCCcCCCCceeEec-CCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~Lp-CGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
+++..|+||+++|.+++.+..++ |||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45678999999999988888887 9999999999999999999999999874
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32 E-value=1.3e-12 Score=115.99 Aligned_cols=51 Identities=29% Similarity=0.571 Sum_probs=41.8
Q ss_pred CCCccccccCCcCCCC---------------ceeEecCCChhcHHHHHHHHH-----cCCCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d---------------~v~~LpCGHiFH~~CI~qWL~-----~k~tCPICRtsLl~ 654 (657)
.++.|+||+++|..++ .+..++|+|+||..||.+||. .+.+||+||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997654 234679999999999999994 56789999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.28 E-value=2.3e-12 Score=100.00 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
..+..|+||+++|.+.+ .+..++|||.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999997654 4667799999999999999999999999999874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.4e-12 Score=108.19 Aligned_cols=54 Identities=28% Similarity=0.761 Sum_probs=43.4
Q ss_pred CCCCCCccccccCCcCC-----------CCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 601 SQQEQEPCCICQEEYND-----------GEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d-----------~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
...+++.|+||+++|.+ ++.+..+ +|+|.||.+||.+||+.+.+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred ecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34566778999888865 3335555 599999999999999999999999998753
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=2.1e-12 Score=105.02 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=45.7
Q ss_pred CCCCccccccCCcCCC----CceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 603 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 603 ~~~e~C~IClEef~d~----d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
.++..|+||++.|.++ ..+..++|||.||..||.+|++.+.+||+||+.+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999999764 4456789999999999999999999999999988653
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-12 Score=103.39 Aligned_cols=53 Identities=26% Similarity=0.612 Sum_probs=45.2
Q ss_pred CCCCCccccccCCcCCC----CceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~----d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..+...|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35677899999999865 234678999999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=3.7e-12 Score=114.16 Aligned_cols=54 Identities=26% Similarity=0.578 Sum_probs=45.5
Q ss_pred cCCCCCCCccccccCCcCCCC---------------ceeEecCCChhcHHHHHHHHHcCCCCCCCCCCc
Q 006188 599 LGSQQEQEPCCICQEEYNDGE---------------DTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652 (657)
Q Consensus 599 ~~~~~~~e~C~IClEef~d~d---------------~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsL 652 (657)
......++.|+||++.|.+.. .+..++|+|.||..||.+||+.+.+||+||+.+
T Consensus 31 w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 31 WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 344557789999999998651 256679999999999999999999999999984
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.9e-12 Score=104.41 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=43.4
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
..++..|+||++.|.++. .++|||.||..||.+|+..+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEE---EETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCE---EccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 355678999999997764 7899999999999999999999999999875
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=5.4e-12 Score=100.21 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=44.6
Q ss_pred CCCccccccCCcCCC----CceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 604 EQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 604 ~~e~C~IClEef~d~----d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
++..|+||++.|.++ ..+..++|||.||..||.+|++.+..||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999764 3456789999999999999999999999999988653
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=101.97 Aligned_cols=50 Identities=28% Similarity=0.568 Sum_probs=43.7
Q ss_pred CCCCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..+...|+||++.|.++. .+ +|||.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKGYLIDAT---TITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSSCCSSCE---ECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred cCCCCCCCCCChHHHCcC---EECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345678999999998865 55 999999999999999999999999998764
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=102.43 Aligned_cols=54 Identities=28% Similarity=0.680 Sum_probs=45.4
Q ss_pred CCCCCCccccccCCcCCCCc-eeEecCCChhcHHHHHHHHHcC---CCCCCCCCCcCC
Q 006188 601 SQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLMHK---NLCPICKTTALS 654 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~qWL~~k---~tCPICRtsLl~ 654 (657)
...+...|+||++.|.+.+. ...++|||.||..||.+|++.+ ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34566789999999988654 5678999999999999999976 789999998754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=103.02 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=43.2
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
......|+||++.|.++. .++|||.||..||.+|++....||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345678999999997765 7899999999999999999999999999874
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.3e-11 Score=99.89 Aligned_cols=50 Identities=34% Similarity=0.720 Sum_probs=43.2
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..+..|+||++.+.++. ..++|||.||..||.+|++.+.+||+||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~--~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCE--EETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCc--EecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 34678999999987643 578999999999999999999999999998753
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=103.67 Aligned_cols=55 Identities=29% Similarity=0.652 Sum_probs=45.4
Q ss_pred CCCCCCCccccccCCcCCCCceeEecCC-----ChhcHHHHHHHHHcCC--CCCCCCCCcCCC
Q 006188 600 GSQQEQEPCCICQEEYNDGEDTGILHCG-----HDFHTSCIKQWLMHKN--LCPICKTTALST 655 (657)
Q Consensus 600 ~~~~~~e~C~IClEef~d~d~v~~LpCG-----HiFH~~CI~qWL~~k~--tCPICRtsLl~t 655 (657)
....++..|.||+++|.+++.+ ++||+ |.||.+||++||..+. +||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3445667899999999877665 58996 9999999999999764 899999988653
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=8.4e-12 Score=101.68 Aligned_cols=50 Identities=36% Similarity=0.898 Sum_probs=44.1
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
..+...|+||++.+.+ ..++|||.||..||.+|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3456789999999877 5889999999999999999999999999988753
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=2.5e-11 Score=100.59 Aligned_cols=50 Identities=26% Similarity=0.753 Sum_probs=43.0
Q ss_pred CCCCCccccccCCcCCCCceeEec-CCChhcHHHHHHHHHcC--CCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~Lp-CGHiFH~~CI~qWL~~k--~tCPICRtsLl~ 654 (657)
..++..|+||++.|.++. .++ |||.||..||.+|++.+ ..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345678999999998876 788 99999999999999865 689999998654
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=98.79 Aligned_cols=51 Identities=33% Similarity=0.619 Sum_probs=43.1
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH---cCCCCCCCCCCcCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTTALST 655 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---~k~tCPICRtsLl~t 655 (657)
..+...|+||++.|.++. .++|||.||..||.+|++ .+..||+||+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~~~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSEE---ECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCeE---EcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 355678999999998655 779999999999999997 456899999988654
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=96.72 Aligned_cols=50 Identities=22% Similarity=0.551 Sum_probs=43.4
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH-cCCCCCCCCCCcCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALST 655 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~-~k~tCPICRtsLl~t 655 (657)
.+...|+||++.+.++. .++|||.||..||.+|+. ....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45678999999998887 589999999999999995 567899999998654
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=1.7e-11 Score=113.28 Aligned_cols=48 Identities=35% Similarity=0.882 Sum_probs=42.4
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
++..|+||++.|.++. .++|||.||..||.+|+..+..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~~---~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAV---TLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEE---EETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCce---ECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3457999999998765 78999999999999999999999999998753
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=6.5e-12 Score=114.67 Aligned_cols=55 Identities=27% Similarity=0.611 Sum_probs=4.5
Q ss_pred ccCCCCCCCccccccCCcCCC-------------Cc--eeEecCCChhcHHHHHHHHHcCCCCCCCCCCc
Q 006188 598 SLGSQQEQEPCCICQEEYNDG-------------ED--TGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652 (657)
Q Consensus 598 ~~~~~~~~e~C~IClEef~d~-------------d~--v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsL 652 (657)
....+..++.|+||+++|.++ ++ +..++|+|.||..||.+||+.+.+||+||+..
T Consensus 41 ~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 41 LWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EEEECCCC--------------------------------------------------------------
T ss_pred EEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 344556778999999999763 22 23358999999999999999999999999974
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=7.3e-11 Score=98.34 Aligned_cols=50 Identities=28% Similarity=0.578 Sum_probs=43.7
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc------CCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~------k~tCPICRtsLl~ 654 (657)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345678999999998876 7899999999999999997 6789999998764
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.09 E-value=5.7e-11 Score=98.69 Aligned_cols=49 Identities=31% Similarity=0.518 Sum_probs=43.4
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-CCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-k~tCPICRtsLl~ 654 (657)
.++..|+||++.|.++. .++|||.||+.||.+|+.. +.+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45678999999998876 7899999999999999997 7789999998764
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=9e-11 Score=97.78 Aligned_cols=50 Identities=28% Similarity=0.663 Sum_probs=43.7
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc------CCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH------KNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~------k~tCPICRtsLl~ 654 (657)
..+...|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345678999999998876 6799999999999999987 7789999998764
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=92.85 Aligned_cols=44 Identities=34% Similarity=0.674 Sum_probs=38.4
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH---cCCCCCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 648 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---~k~tCPIC 648 (657)
..++..|+||++.|.++. .++|||.||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356778999999998776 779999999999999998 45689998
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=4.2e-11 Score=104.99 Aligned_cols=48 Identities=33% Similarity=0.766 Sum_probs=41.8
Q ss_pred CCCccccccCCcCCCCceeE-ecCCChhcHHHHHHHHHcC-CCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGI-LHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~-LpCGHiFH~~CI~qWL~~k-~tCPICRtsLl~ 654 (657)
++..|+||++.|.++. . ++|||.||..||.+|+..+ ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDAR---LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCcc---ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4567999999998754 6 8999999999999999987 699999998753
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=4.1e-11 Score=99.25 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=43.4
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-------CCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-------KNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-------k~tCPICRtsLl~ 654 (657)
..++..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345678999999998876 6899999999999999986 5689999998754
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=99.15 Aligned_cols=48 Identities=25% Similarity=0.757 Sum_probs=42.0
Q ss_pred CCCCCccccccCCcCCCCceeEec-CCChhcHHHHHHHHHcC--CCCCCCCCCc
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK--NLCPICKTTA 652 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~Lp-CGHiFH~~CI~qWL~~k--~tCPICRtsL 652 (657)
..++..|+||++.|.++. .++ |||.||..||.+|+... ..||+||+.+
T Consensus 10 ~~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 356688999999998876 788 99999999999999754 5899999987
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.2e-10 Score=102.81 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.++..|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDAT---TIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcC---EeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 45678999999998765 65 999999999999999999999999998764
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=2.1e-10 Score=101.00 Aligned_cols=47 Identities=30% Similarity=0.601 Sum_probs=41.2
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC---CCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN---LCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~---tCPICRtsLl~ 654 (657)
...|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 356999999998876 689999999999999999764 89999998764
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.3e-10 Score=104.24 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=45.1
Q ss_pred CCCCccccccCCcCCC----CceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~----d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.++..|+||++.|.++ ..+..++|||.||..||.+||+.+.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3567899999999875 345688999999999999999999999999998764
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=101.00 Aligned_cols=48 Identities=33% Similarity=0.765 Sum_probs=41.9
Q ss_pred CCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
+...|+||++.|.++. .+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAM---IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcC---EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3467999999998764 55 899999999999999999999999998753
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=89.74 Aligned_cols=44 Identities=34% Similarity=0.948 Sum_probs=37.8
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH---cCCCCCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPIC 648 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---~k~tCPIC 648 (657)
..+...|+||++.|.++. .++|||.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999999998876 689999999999999954 56789998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=2.2e-10 Score=103.62 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=41.6
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC-CCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~-tCPICRtsLl~ 654 (657)
++..|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3467999999998765 789999999999999998554 89999998864
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=3.7e-10 Score=106.86 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=40.7
Q ss_pred CCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHc-CCCCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMH-KNLCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~-k~tCPICRtsLl 653 (657)
....|+||++.|.++. .+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTM---TTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEE---EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcC---EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3457999999998754 55 99999999999999997 778999999874
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=7.9e-10 Score=88.95 Aligned_cols=51 Identities=24% Similarity=0.591 Sum_probs=41.6
Q ss_pred CCCccccccC-CcCCCCce-eEecCCChhcHHHHHHHHHc-CCCCCCCCCCcCC
Q 006188 604 EQEPCCICQE-EYNDGEDT-GILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClE-ef~d~d~v-~~LpCGHiFH~~CI~qWL~~-k~tCPICRtsLl~ 654 (657)
++..|+||++ .|.++... ..++|||.||..||.+|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3567999999 78777643 35699999999999999875 4679999998864
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=5.5e-10 Score=105.27 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=41.9
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC-CCCCCCCCcCCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALST 655 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~-tCPICRtsLl~t 655 (657)
...|+||++.|.++. .++|||.||..||.+|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457999999998876 789999999999999999765 799999988653
No 42
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=7.1e-10 Score=93.70 Aligned_cols=50 Identities=22% Similarity=0.575 Sum_probs=42.5
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC--CCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k--~tCPICRtsLl~ 654 (657)
+..+.|.||++.+..++ ....|+|.||..||.+||+.+ .+||+||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 55688999999998765 334899999999999999977 889999998653
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.88 E-value=8.8e-10 Score=94.40 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=44.3
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.+...|+||++.|.+++ .++|||.||+.||.+|+....+||+||..+..
T Consensus 12 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45678999999999987 88999999999999999988999999998753
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.86 E-value=6.9e-10 Score=99.73 Aligned_cols=50 Identities=24% Similarity=0.534 Sum_probs=43.1
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC-CCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~-tCPICRtsLl~ 654 (657)
..+...|+||++.+.++. .++|||.||..||.+|+..+. .||+||+.+..
T Consensus 15 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeE---ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345678999999998775 689999999999999999765 89999998764
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.85 E-value=3.3e-10 Score=101.00 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=41.6
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-CCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-k~tCPICRtsLl 653 (657)
.++..|+||++.|.++. .++|||.||..||.+|+.. +..||+||+.+.
T Consensus 13 ~~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34567999999998776 7799999999999999986 668999999864
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.85 E-value=8.7e-10 Score=98.79 Aligned_cols=52 Identities=27% Similarity=0.625 Sum_probs=44.8
Q ss_pred CCCCccccccCCcCCC----CceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDG----EDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~----d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.+...|+||++.|.++ .....++|||.||..||.+|++.+.+||+||+.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 5567899999999764 234678999999999999999999999999998864
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.84 E-value=1.3e-09 Score=96.36 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=44.5
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.+...|+||++.|.+++ +++|||.||+.||.+||....+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45678999999999988 89999999999999999988899999998764
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.83 E-value=1.7e-09 Score=95.27 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCCCccccccCCcCCCCceeEecCC-ChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCG-HiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.++..|+||++.|.+++ +++|| |.||+.||.+||....+||+||..+..
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 45678999999999987 88999 999999999999988899999998764
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.79 E-value=1.8e-09 Score=96.27 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=41.4
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-CCCCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-k~tCPICRtsLl~ 654 (657)
+..|+||++.|.++. .++|||.||..||.+|+.. ...||+||+.+..
T Consensus 23 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 467999999998765 6899999999999999997 7789999998754
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=3e-09 Score=106.41 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC-CCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k-~tCPICRtsLl 653 (657)
.....|+||++.|.+++ +++|||+||+.||.+|+... .+||+||.++.
T Consensus 206 ~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 45678999999999987 89999999999999999864 45999999875
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.77 E-value=2.3e-09 Score=87.10 Aligned_cols=48 Identities=31% Similarity=0.682 Sum_probs=41.0
Q ss_pred CCCCccccccCCcCCCCceeEe--cCCCh-hcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~L--pCGHi-FH~~CI~qWL~~k~tCPICRtsLl 653 (657)
.++..|.||++.+.+.. .+ ||||. ||..|+.+|++.+..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGC---IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEE---EEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEE---EECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 35568999999876653 55 99999 899999999999999999999875
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=3.8e-09 Score=113.69 Aligned_cols=48 Identities=33% Similarity=0.700 Sum_probs=41.6
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH-cCCCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM-HKNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~-~k~tCPICRtsLl~ 654 (657)
....|+||++.+.++ ..++|||.||..||.+|+. .+..||+||+.+..
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999998665 4889999999999999999 78899999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=2.8e-09 Score=84.18 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=40.3
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
.+...|+||++.|.++. .|+|||.||..||.+| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 45678999999999876 8899999999999884 67899999987643
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.72 E-value=3.8e-09 Score=85.61 Aligned_cols=48 Identities=29% Similarity=0.661 Sum_probs=40.9
Q ss_pred CCCCccccccCCcCCCCceeEe--cCCCh-hcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGIL--HCGHD-FHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~L--pCGHi-FH~~CI~qWL~~k~tCPICRtsLl 653 (657)
.....|.||++.+.+.. .+ ||||. ||..|+.+|.+....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN---IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE---EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE---EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 44578999999876654 55 99998 999999999998889999999874
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.70 E-value=8.3e-09 Score=87.47 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCCCCccccccCCcCCCCceeEe--cCCChhcHHHHHHHHH-cCCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM-HKNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~L--pCGHiFH~~CI~qWL~-~k~tCPICRtsLl~ 654 (657)
..++..|+||++.+...+ +..+ +|||.||..||.+|+. ....||+||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 356678999999886543 2234 4999999999999985 45679999998764
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=2e-09 Score=100.50 Aligned_cols=48 Identities=19% Similarity=0.479 Sum_probs=41.9
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC-CCCCCCCCc
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTA 652 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~-tCPICRtsL 652 (657)
..+...|+||++.|.++. .++|||.||..||.+|+..+. .||+||+.+
T Consensus 28 l~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 355678999999998885 689999999999999998665 899999975
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=2.6e-09 Score=95.89 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=40.5
Q ss_pred CCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 604 EQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
+...|+||++.|.++. .+ +|||.||..||..|+. ..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 4567999999998876 77 9999999999999998 789999998743
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=8.4e-09 Score=89.68 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=39.8
Q ss_pred CCCCccccccCCcCCCCceeEec-CCChhcHHHHHHHHHcC------CCCCC--CCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILH-CGHDFHTSCIKQWLMHK------NLCPI--CKTT 651 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~Lp-CGHiFH~~CI~qWL~~k------~tCPI--CRts 651 (657)
.....|+||++.|.+++ .++ |||+||+.||.+||... .+||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999999999887 785 99999999999999864 48999 9866
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=5.3e-09 Score=87.02 Aligned_cols=43 Identities=26% Similarity=0.562 Sum_probs=37.2
Q ss_pred CCccccccCCcCCCCceeEecCCCh-hcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHi-FH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
+..|.||++.+.+.. .++|||. ||..|+.+| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIV---FVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEE---EETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEE---EcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 457999999887654 7899999 999999998 889999998753
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.8e-08 Score=96.80 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC-CCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-NLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k-~tCPICRtsLl~ 654 (657)
......|+||++.|.+++ +++|||.||+.||.+|+... .+||+|+..+..
T Consensus 103 ip~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 356678999999999887 88999999999999999864 469999998753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=2.3e-08 Score=94.81 Aligned_cols=50 Identities=24% Similarity=0.534 Sum_probs=42.9
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC-CCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN-LCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~-tCPICRtsLl~ 654 (657)
..+...|+||++.|.++. .++|||+||..||.+|+..+. .||+||+.+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 355678999999998875 689999999999999998654 89999998754
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=6.2e-08 Score=80.54 Aligned_cols=42 Identities=26% Similarity=0.569 Sum_probs=35.8
Q ss_pred CccccccCCcCCCCceeEecCCCh-hcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHi-FH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..|.||++.+.+.. .++|||. ||..|+.+ ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~~---~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIV---FVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBC---CSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEE---EecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 46999999987765 7899999 99999965 4789999998764
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.42 E-value=3.7e-08 Score=104.36 Aligned_cols=52 Identities=27% Similarity=0.633 Sum_probs=40.3
Q ss_pred CCCCCccccccCCcCCCCcee-----EecCCChhcHHHHHHHHHcC-----------CCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYNDGEDTG-----ILHCGHDFHTSCIKQWLMHK-----------NLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~-----~LpCGHiFH~~CI~qWL~~k-----------~tCPICRtsLl 653 (657)
.+...+|+||++.+.+...+. -.+|+|.||..||.+||+.. ..||+||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 346678999999998733221 23799999999999999842 45999999874
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.4e-07 Score=77.74 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=38.2
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCCh-hcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHi-FH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
...+...|.||++.+.+. ..+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999887654 48899999 99999984 5789999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=8e-08 Score=82.95 Aligned_cols=48 Identities=31% Similarity=0.573 Sum_probs=39.1
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC--------CCCCC--CCCC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--------NLCPI--CKTT 651 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k--------~tCPI--CRts 651 (657)
....|.||++++..++.+..++|||.||..||.++++.+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999999877644445899999999999999732 35999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.35 E-value=1.1e-07 Score=76.97 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=41.3
Q ss_pred CccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 606 EPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..|+||++.+.++. ++ +|||+|++.||.+||+.+.+||++++.+..
T Consensus 4 ~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 56999999999875 77 899999999999999988889999998753
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.30 E-value=3.4e-07 Score=74.06 Aligned_cols=48 Identities=31% Similarity=0.798 Sum_probs=37.5
Q ss_pred CCCCccccccCCcCCCCceeEecCC--C---hhcHHHHHHHHHc--CCCCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCG--H---DFHTSCIKQWLMH--KNLCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCG--H---iFH~~CI~qWL~~--k~tCPICRtsLl 653 (657)
++...|.||+++..+ .+ ++||. | .||..||.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~~--~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGN--ER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSC--CC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCC--ce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999998432 23 57865 4 8999999999985 567999999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.3e-07 Score=95.17 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC--CCCCC--CCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK--NLCPI--CKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k--~tCPI--CRtsLl 653 (657)
.....|+||++.|.+++ ..+.|||.||+.||.+|+... ..||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34567999999998887 234899999999999999864 46999 998764
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.26 E-value=1.8e-07 Score=79.11 Aligned_cols=42 Identities=31% Similarity=0.714 Sum_probs=35.4
Q ss_pred CCccccccCCcCCCCceeEecCCCh-hcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHi-FH~~CI~qWL~~k~tCPICRtsLl 653 (657)
+..|.||++.+.+. ..+||||. ||..|+..| ..||+||+.+.
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35799999887664 48899999 999999887 39999999774
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.17 E-value=2.4e-07 Score=98.44 Aligned_cols=43 Identities=26% Similarity=0.657 Sum_probs=37.7
Q ss_pred CCCccccccCCcCCCCceeEecCCCh-hcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHD-FHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHi-FH~~CI~qWL~~k~tCPICRtsLl 653 (657)
++..|+||++.+.++. .+||||. ||..|+..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~~v---~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVV---FIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEE---EETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceE---EcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4578999999987655 8899999 999999988 78999999875
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.69 E-value=1.8e-05 Score=70.42 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=37.0
Q ss_pred ccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-CCCCCCCCCCcCC
Q 006188 607 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-KNLCPICKTTALS 654 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-k~tCPICRtsLl~ 654 (657)
.|.+|--.+.. ..+.+||+|+||.+|+..|.+. .++||+|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 58888665544 4567799999999999999875 5789999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.35 E-value=7.9e-05 Score=75.35 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=39.6
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC--CCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~--tCPICRtsLl 653 (657)
....|.||.+....+. ++-.|+|.||..|+.+|++.+. .||.|++...
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4788999999988764 3335999999999999998654 8999998754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.61 E-value=0.0038 Score=54.98 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCCccccccCCcCCCCceeEecCC-ChhcHHHHHHHHHcCCCCCCCCCCcCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALST 655 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCG-HiFH~~CI~qWL~~k~tCPICRtsLl~t 655 (657)
..-..|-.|.-+. .. ...|. |.+|..|+.-.|.....||+|++++++.
T Consensus 26 ~G~~nCKsCWf~~--k~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KG---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SS---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhcccc--CC---eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4557899997553 33 55555 9999999999999999999999998763
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.60 E-value=0.035 Score=47.83 Aligned_cols=34 Identities=15% Similarity=0.445 Sum_probs=26.6
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHH
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qW 638 (657)
+..|.||.+.|..+.....+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987544443445899999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.17 E-value=0.24 Score=40.64 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCCCcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKTTAL 653 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRtsLl 653 (657)
.....|.||.+. ++.+..-.|...||..|+...|.... .||.|+....
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999743 44333337999999999998886433 4999987543
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.13 E-value=0.36 Score=57.41 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCCCCCccccccCCcCCCCceeEecCC-ChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCG-HDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCG-HiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..-+...|+|-++-+.+++ +++.| ++|-+.+|.+||....+||+-|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3345678999999999988 89997 689999999999999999999988753
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.68 E-value=0.4 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=26.5
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHH
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qW 638 (657)
...++.|.|| +.|...+....--|+-+||..|+++-
T Consensus 12 ~~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcc-ccccccceeccccccccccHhhcccc
Confidence 3567889999 44555553333359999999999996
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.81 E-value=0.29 Score=52.52 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCccccccCCcCCCCceeEecCCCh--hcHHHHHHHHHcCC--CCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMHKN--LCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHi--FH~~CI~qWL~~k~--tCPICRtsLl~ 654 (657)
...|+|-...+..+. +-..|.|+ |-..-+.+...+.. .||+|.+.+..
T Consensus 249 SL~CPlS~~ri~~Pv--Rg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 249 SLQCPISYTRMKYPS--KSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp ESBCTTTSSBCSSEE--EETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred eecCCCccccccccC--cCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 457998888877765 56689999 55555555544433 49999987743
No 79
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.11 E-value=0.67 Score=49.61 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=34.5
Q ss_pred CCccccccCCcCCCCceeEecCCCh--hcHHHHHHHHHcCC--CCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHD--FHTSCIKQWLMHKN--LCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHi--FH~~CI~qWL~~k~--tCPICRtsLl~ 654 (657)
...|+|-...+..+. +-..|.|+ |-..-+.+....+. .||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~--Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPC--RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEE--EETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCC--cCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 457998888877765 55689999 66666666555444 49999998753
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.52 E-value=0.66 Score=37.15 Aligned_cols=47 Identities=26% Similarity=0.570 Sum_probs=32.4
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC----CCCCCCCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTT 651 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRts 651 (657)
...+..|.||... ++.+..-.|.-.||..|+..-+... =.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999763 3422223788999999998755422 249999875
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.25 E-value=0.31 Score=39.05 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=36.0
Q ss_pred CCCCCccccccCCcCCCCc-eeEecCCChhcHHHHHHHHH-----cCCCCCCCCCCcCC
Q 006188 602 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTALS 654 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~qWL~-----~k~tCPICRtsLl~ 654 (657)
..+...|.||...+.+... +..-.|...||..|+.--.. .+-.||.|+..-..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 3456789999998864442 33337999999999864322 33459999875443
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.66 E-value=0.75 Score=35.15 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=29.7
Q ss_pred ccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCCC
Q 006188 607 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKTT 651 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRts 651 (657)
.|.||...-..++.+..-.|...||..|+..=|.... .||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 4899987643333333337999999999976444222 39999763
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.59 E-value=0.43 Score=39.33 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc----CCCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH----KNLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~----k~tCPICRtsLl 653 (657)
......|.||.........+..=.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3445679999877532222222269999999999764432 234999987543
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=75.33 E-value=0.46 Score=38.08 Aligned_cols=49 Identities=31% Similarity=0.620 Sum_probs=33.3
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC----CCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRtsLl 653 (657)
...+..|.||.+. ++.+..-.|...||..|+..-|... =.||.|+...+
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3456789999752 3422233699999999998655432 23999987654
No 85
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=72.64 E-value=3.3 Score=35.69 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCCCccccccCCcCCCCceeEe-cCCChhcHHHHHHHHHcC
Q 006188 603 QEQEPCCICQEEYNDGEDTGIL-HCGHDFHTSCIKQWLMHK 642 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~L-pCGHiFH~~CI~qWL~~k 642 (657)
.....|.+|.|.+++..-|..- .=.|.||.-|-+..++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 4567899999999998844332 246999999999999843
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.11 E-value=3.3 Score=34.54 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCccccccCCcCCCC-ceeEecCCChhcHHHHHHHHH-----cCCCCCCCCCCc
Q 006188 605 QEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTTA 652 (657)
Q Consensus 605 ~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL~-----~k~tCPICRtsL 652 (657)
...| ||...+.+.. .+..-.|...||..|+.--.. .+-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445 9998875333 333347999999999853221 345699999764
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.10 E-value=0.36 Score=37.87 Aligned_cols=47 Identities=23% Similarity=0.617 Sum_probs=31.8
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKT 650 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRt 650 (657)
....+..|.||... ++.+..-.|...||..|+.+-|.... .||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34567789999864 34333337999999999986554322 3888864
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.61 E-value=1.5 Score=36.27 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=33.1
Q ss_pred CccccccCCcCCCCceeEecCCChhcHHHHHHHH---------HcCCCCCCCCCCcCCC
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL---------MHKNLCPICKTTALST 655 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL---------~~k~tCPICRtsLl~t 655 (657)
..| ||...+.....+..-.|...||..|+.--. ..+..||.|+..-.+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 445 898887644434444799999999984211 2466799998765544
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.36 E-value=1.3 Score=38.96 Aligned_cols=39 Identities=15% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM 640 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~ 640 (657)
...+..|.||.+.-...+.+..-.|+..||..||...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 346778999977643333244457999999999987764
No 90
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.19 E-value=1.6 Score=36.41 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCCccccccCCcCCCCceeEe--cCCChhcHHHHHHHHH---------cCCCCCCCCCCcCCCC
Q 006188 604 EQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLM---------HKNLCPICKTTALSTS 656 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~L--pCGHiFH~~CI~qWL~---------~k~tCPICRtsLl~tS 656 (657)
....| ||......+..+..= .|...||..|+.---. .+..||.|+......|
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s 77 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCCC
Confidence 34456 898875555444444 6999999999853111 2456999988765543
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=62.17 E-value=2.1 Score=37.40 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=30.9
Q ss_pred CccccccCCcCCCCceeEecCCChhcHHHHHHHHH---cCCCCCCCCCCc
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTTA 652 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---~k~tCPICRtsL 652 (657)
..| ||......+..+..-.|.-.||..|+..=+. ..-.||.|+..-
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCC
Confidence 456 8987766555444447999999999865332 123599998643
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.99 E-value=2.4 Score=36.80 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=33.3
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCCCc
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKTTA 652 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRtsL 652 (657)
....+..|.||... ++.+..-.|.-.||..|+.+=|.... .||.|+...
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 34566789999754 44333336888999999987664322 399998653
No 93
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=59.71 E-value=2.3 Score=35.24 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCCCCCccccccCCc-CCCCceeE-ecCCChhcHHHHHHHHHcC--CCCCCCCC
Q 006188 601 SQQEQEPCCICQEEY-NDGEDTGI-LHCGHDFHTSCIKQWLMHK--NLCPICKT 650 (657)
Q Consensus 601 ~~~~~e~C~IClEef-~d~d~v~~-LpCGHiFH~~CI~qWL~~k--~tCPICRt 650 (657)
....+..|.||.+.- .+.+.+.. =.|.-.||..|+..-..-. =.||.|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345678899998764 22222222 2799999999997533211 23888865
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.31 E-value=2.2 Score=36.62 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCCCccccccCCcC-CCCcee-EecCCChhcHHHHHHHHHc--CCCCCCCCCCc
Q 006188 603 QEQEPCCICQEEYN-DGEDTG-ILHCGHDFHTSCIKQWLMH--KNLCPICKTTA 652 (657)
Q Consensus 603 ~~~e~C~IClEef~-d~d~v~-~LpCGHiFH~~CI~qWL~~--k~tCPICRtsL 652 (657)
+.+..|.||...-. +.+.+. .-.|.-.||..|+..-+.- .=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45678999986532 222221 2268899999999754322 12399997644
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.00 E-value=4.2 Score=35.39 Aligned_cols=46 Identities=30% Similarity=0.666 Sum_probs=28.7
Q ss_pred CCccccccCCcCCCCceeEec--CC-ChhcHHHHHHHHHc----CCCCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~Lp--CG-HiFH~~CI~qWL~~----k~tCPICRtsLl~ 654 (657)
...| ||..... ++.+..=. |. ..||..|+. |.. +-.||.|+.....
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence 3445 9988653 34222224 65 689999997 432 2349999876543
No 96
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.73 E-value=0.63 Score=40.33 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKT 650 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRt 650 (657)
..++..|.||...-.....+..-.|...||..|+.+=|.... .||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 345668999987643333222237999999999975443222 3999975
No 97
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=55.94 E-value=0.78 Score=37.19 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=31.2
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC----CCCCCCCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTT 651 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRts 651 (657)
..+..|.||... ++.+..-.|.-.||..|+.+-|... =.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999753 3433333799999999998654422 239999764
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=55.74 E-value=12 Score=33.01 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=22.9
Q ss_pred CCCccccccCCc------CCCCceeEecCCChhcHHHHH
Q 006188 604 EQEPCCICQEEY------NDGEDTGILHCGHDFHTSCIK 636 (657)
Q Consensus 604 ~~e~C~IClEef------~d~d~v~~LpCGHiFH~~CI~ 636 (657)
....|.+|+..- ..++.+....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998753 122333344799999999995
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=55.16 E-value=8.1 Score=31.37 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=24.0
Q ss_pred CCCCCccccccCCcCCCCce-eEe-cCCChhcHHHHH
Q 006188 602 QQEQEPCCICQEEYNDGEDT-GIL-HCGHDFHTSCIK 636 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v-~~L-pCGHiFH~~CI~ 636 (657)
......|.+|...+.+.... ..- .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35567899999998765533 333 689999999974
No 100
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=54.45 E-value=3.5 Score=33.27 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=30.7
Q ss_pred CccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCC
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPIC 648 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPIC 648 (657)
..|--|+..|.+........|++.||.+|=.=--+.-+.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998654323445799999999954333455679988
No 101
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.63 E-value=0.79 Score=37.67 Aligned_cols=52 Identities=31% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHH----HcCCCCCCCCCCcCCCC
Q 006188 604 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL----MHKNLCPICKTTALSTS 656 (657)
Q Consensus 604 ~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL----~~k~tCPICRtsLl~tS 656 (657)
....| ||...+.+++ .+..-.|...||..|+.--- ..+..||.|+....++|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss 71 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence 34567 7988765554 33334799999999986421 13345999988766554
No 102
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.12 E-value=5.8 Score=32.83 Aligned_cols=34 Identities=24% Similarity=0.605 Sum_probs=26.8
Q ss_pred CCCCCccccccCCcCCCCceeEecC-CChhcHHHHHHHH
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHC-GHDFHTSCIKQWL 639 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpC-GHiFH~~CI~qWL 639 (657)
.++..-|.||.++ ..++.+.| +-+||..|.++.-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 3456679999887 34778899 8999999988754
No 103
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=53.01 E-value=15 Score=32.05 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=36.4
Q ss_pred CCCccccccCCcCCCCc----eeEecCCChhcHHHHHHHHH-cCCCCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGED----TGILHCGHDFHTSCIKQWLM-HKNLCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~----v~~LpCGHiFH~~CI~qWL~-~k~tCPICRtsLl 653 (657)
....|.||=++.....+ +..-.|+--.|+.|+.-=.+ ....||.|++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999998654331 23337888899999976555 4567999999875
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=52.71 E-value=4 Score=31.45 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=28.8
Q ss_pred ccccccCCcCCCCce-eEe-cCCChhcHHHHHHHH----HcCCCCCCCC
Q 006188 607 PCCICQEEYNDGEDT-GIL-HCGHDFHTSCIKQWL----MHKNLCPICK 649 (657)
Q Consensus 607 ~C~IClEef~d~d~v-~~L-pCGHiFH~~CI~qWL----~~k~tCPICR 649 (657)
.|.||...+.++... ..- .|.--||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999888655432 223 588899999975321 2566799986
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=51.39 E-value=1.5 Score=34.71 Aligned_cols=47 Identities=21% Similarity=0.569 Sum_probs=31.6
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC----CCCCCCCCCc
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTTA 652 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRtsL 652 (657)
..+..|.||... ++.+..-.|.-.||..|+.+-|... -.||.|....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 356789999763 4433333799999999998655422 2399887643
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=50.84 E-value=6.1 Score=31.45 Aligned_cols=52 Identities=31% Similarity=0.601 Sum_probs=33.6
Q ss_pred CCCCCccccccCCcCC--CCceeEecCCChhcHHHHHHHHH-------cCCCCCCCCCCcC
Q 006188 602 QQEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLM-------HKNLCPICKTTAL 653 (657)
Q Consensus 602 ~~~~e~C~IClEef~d--~d~v~~LpCGHiFH~~CI~qWL~-------~k~tCPICRtsLl 653 (657)
...+..|.||...... ...+..-.|.-.||..|+..-|. ..=.|+.|+....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3456789999976543 22222227999999999986432 1224999976543
No 107
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.49 E-value=14 Score=34.80 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=30.7
Q ss_pred CCCCccccccCCcCC--CCceeEecCCChhcHHHHHHHHHcCC--CCCCCCC
Q 006188 603 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIKQWLMHKN--LCPICKT 650 (657)
Q Consensus 603 ~~~e~C~IClEef~d--~d~v~~LpCGHiFH~~CI~qWL~~k~--tCPICRt 650 (657)
..+..|.+|...|.. +.......|.|.+|..|-. |+.... .|=+|.+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 357889999998753 3334455899999999972 332211 2666654
No 108
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.58 E-value=7.8 Score=35.83 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=25.1
Q ss_pred CCCCccccccCCcCC--CCceeEecCCChhcHHHHH
Q 006188 603 QEQEPCCICQEEYND--GEDTGILHCGHDFHTSCIK 636 (657)
Q Consensus 603 ~~~e~C~IClEef~d--~d~v~~LpCGHiFH~~CI~ 636 (657)
..+..|.+|...|.- ........|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 467889999999943 2233445899999999854
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=47.17 E-value=6.5 Score=32.43 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=28.1
Q ss_pred CCCccccccCCcCCCCceeEec--CC-ChhcHHHHHHHHHcC----CCCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMHK----NLCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~Lp--CG-HiFH~~CI~qWL~~k----~tCPICRtsLl 653 (657)
+...| ||..... +..+..=. |. ..||..|+. |... -.||.|+....
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34456 8987642 44222224 66 689999997 4422 24999987543
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.78 E-value=3.8 Score=36.33 Aligned_cols=45 Identities=22% Similarity=0.564 Sum_probs=29.5
Q ss_pred CccccccCCcCCC-CceeEecCCChhcHHHHHHHHHcC----CCCCCCCC
Q 006188 606 EPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLMHK----NLCPICKT 650 (657)
Q Consensus 606 e~C~IClEef~d~-d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRt 650 (657)
..|.||.+.-.+. ..+..-.|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688998653332 322222699999999997655432 24999986
No 111
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.48 E-value=3.4 Score=38.88 Aligned_cols=47 Identities=21% Similarity=0.601 Sum_probs=30.5
Q ss_pred CCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHHH-----cCCCCCCCCC
Q 006188 603 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-----HKNLCPICKT 650 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL~-----~k~tCPICRt 650 (657)
.....| ||...+.+.. .+.+-.|.-.||..|+.--.. ..-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 344568 9988765433 333347999999999953211 2446999985
No 112
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.23 E-value=1.6 Score=37.49 Aligned_cols=50 Identities=16% Similarity=0.390 Sum_probs=32.0
Q ss_pred CCCccccccCCcCCCCceeEe--cCCChhcHHHHHHHHHc--------CCCCCCCCCCcC
Q 006188 604 EQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMH--------KNLCPICKTTAL 653 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~L--pCGHiFH~~CI~qWL~~--------k~tCPICRtsLl 653 (657)
.+..|.||...-.......++ .|...||..|+..-|.. .=.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356799998764322212222 69999999999875531 124999976443
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.71 E-value=2.2 Score=34.92 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH---cCCCCCCCCCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---HKNLCPICKTT 651 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---~k~tCPICRts 651 (657)
.+...| ||...+.....+..-.|...||..|+.---. .+-.||.|+..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 344567 9988765333344447999999999864221 23459998753
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.97 E-value=20 Score=33.51 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=31.9
Q ss_pred CCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHH---------c--CCCCCCCCCC
Q 006188 602 QQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLM---------H--KNLCPICKTT 651 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~---------~--k~tCPICRts 651 (657)
+..+..|.||.+- ++.+-.-.|--.||..||.+-|. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4557889999643 44222227889999999997652 1 1239999864
No 115
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.58 E-value=2.5 Score=37.15 Aligned_cols=50 Identities=20% Similarity=0.405 Sum_probs=31.5
Q ss_pred ccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC----CCCCCCCCCcCCCC
Q 006188 607 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK----NLCPICKTTALSTS 656 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k----~tCPICRtsLl~tS 656 (657)
.|.||...-.+...+..-.|...||..|+.+-|... -.||.|+....-.|
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~g~s 109 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICISGPS 109 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSCSCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCCCCC
Confidence 577887654333322223799999999998655422 23998877554443
No 116
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.52 E-value=4.9 Score=42.54 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHHH-------cCCCCCCCCCCc
Q 006188 603 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLM-------HKNLCPICKTTA 652 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL~-------~k~tCPICRtsL 652 (657)
.....|.+|...|..-. ...+-.||++||..|...++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34567999999886432 223457999999999987653 224587776654
No 117
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=42.37 E-value=13 Score=31.31 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCCCCCCccccccCCcCCCCc-eeEecCCChhcHHHHHHH
Q 006188 600 GSQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 600 ~~~~~~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~qW 638 (657)
..+.+...|.+|...|..-.. ...-.||++||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 344566789999999975431 223379999999997654
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.47 E-value=5.4 Score=40.14 Aligned_cols=47 Identities=21% Similarity=0.508 Sum_probs=26.8
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc--C---CCCCCCCCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH--K---NLCPICKTT 651 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~--k---~tCPICRts 651 (657)
+..|.||...-..+..+..=.|...||..|+.+=|.. + =.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 4468888764333332333379999999999865542 1 239999764
No 119
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.83 E-value=12 Score=31.40 Aligned_cols=38 Identities=24% Similarity=0.550 Sum_probs=27.0
Q ss_pred CCCCCCccccccCCcCCCCc-eeEecCCChhcHHHHHHH
Q 006188 601 SQQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~qW 638 (657)
.+.+...|.+|...|..-.. ...-.||.+||..|....
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34455689999999975431 223379999999997654
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.35 E-value=23 Score=32.65 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=31.2
Q ss_pred CCCCCCccccccCCcCCCCceeEecCCChhcHHHHHHHH------Hc----C-CCCCCCCCCc
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWL------MH----K-NLCPICKTTA 652 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL------~~----k-~tCPICRtsL 652 (657)
.+..++.|.||.+- ++.+-.=.|-..||.+||.+-+ +. . =.|++|+..-
T Consensus 53 ~Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp TTSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 34556779999643 3311112688999999999752 21 1 2499997643
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.91 E-value=15 Score=30.78 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=26.8
Q ss_pred CCCCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHH
Q 006188 601 SQQEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qW 638 (657)
.+.+...|.+|...|..-. ....-.||.+||..|....
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3455678999999996543 1223379999999997543
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=38.62 E-value=3 Score=35.16 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=27.3
Q ss_pred ccccccCCcCCCCceeEecCCChhcHHHHHHHHHcC-----CCCCCCCC
Q 006188 607 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHK-----NLCPICKT 650 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k-----~tCPICRt 650 (657)
.|.||...-.....+..=.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 577776553333311112699999999998765522 24999985
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.52 E-value=2.9 Score=38.17 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=29.3
Q ss_pred CCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHHHcCCCCCCCC
Q 006188 604 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWLMHKNLCPICK 649 (657)
Q Consensus 604 ~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL~~k~tCPICR 649 (657)
....|.+|...|..-. ....-.||.+||..|....+.....|-.|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4467999999986533 222347999999999877655556676664
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.01 E-value=14 Score=31.62 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=26.9
Q ss_pred CCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHHH
Q 006188 603 QEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQWL 639 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qWL 639 (657)
.+...|.+|...|..-. ....-.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 44567999999987543 22334799999999987653
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.53 E-value=13 Score=33.64 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCCCCCccccccCCcCCCC-ceeEecCCChhcHHHHHHH
Q 006188 601 SQQEQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qW 638 (657)
.+.....|.+|...|..-. ....-.||++||..|....
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3345568999999997543 1223379999999997654
No 126
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.54 E-value=5.6 Score=33.38 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=29.5
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-----CCCCCCCCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKT 650 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-----k~tCPICRt 650 (657)
+..|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|..
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 4478899764333332222279999999999865442 124999975
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=35.80 E-value=14 Score=32.54 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCccccccCCcCCCCceeEe--cCCChhcHHHHHHHH---H-------cCCCCCCCCCCcC
Q 006188 605 QEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWL---M-------HKNLCPICKTTAL 653 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~L--pCGHiFH~~CI~qWL---~-------~k~tCPICRtsLl 653 (657)
...|.||...|.+......- .|.-.||..|+.--- + .+-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 45799999998665443333 588999999985221 0 2345999987543
No 128
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.73 E-value=13 Score=33.02 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=10.4
Q ss_pred hcHHHHHHHHH
Q 006188 630 FHTSCIKQWLM 640 (657)
Q Consensus 630 FH~~CI~qWL~ 640 (657)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.56 E-value=17 Score=30.99 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=26.1
Q ss_pred CCCCCccccccCCcCCCCc-eeEecCCChhcHHHHHHH
Q 006188 602 QQEQEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 602 ~~~~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~qW 638 (657)
..+...|.+|...|..-.. ...-.||++||..|....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3455689999999875431 223379999999997653
No 130
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=35.32 E-value=14 Score=32.90 Aligned_cols=11 Identities=45% Similarity=1.340 Sum_probs=10.4
Q ss_pred hcHHHHHHHHH
Q 006188 630 FHTSCIKQWLM 640 (657)
Q Consensus 630 FH~~CI~qWL~ 640 (657)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 131
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=35.04 E-value=18 Score=39.10 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=32.6
Q ss_pred CCCCCCccccccCCcCCCCceeEe--cCCChhcHHHHHHHHHc----------CCCCCCCCCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGIL--HCGHDFHTSCIKQWLMH----------KNLCPICKTT 651 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~L--pCGHiFH~~CI~qWL~~----------k~tCPICRts 651 (657)
.+..+..|.||-+. ++.+.+= .|...||.+||+.++-. +=.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 34557789999653 3333333 68999999999999821 1238888754
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.62 E-value=15 Score=35.97 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=25.6
Q ss_pred CCCccccccCCcCCCC-ceeEecCCChhcHHHHHHH
Q 006188 604 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 604 ~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qW 638 (657)
++..|.+|...|..-. ...+-.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3578999999987543 2233479999999997654
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=31.81 E-value=16 Score=32.51 Aligned_cols=44 Identities=25% Similarity=0.628 Sum_probs=27.2
Q ss_pred CCCCCCccccccCCcCCCCceeEe---cCCChhcHHHHHHHHHcCC----CCCCCCC
Q 006188 601 SQQEQEPCCICQEEYNDGEDTGIL---HCGHDFHTSCIKQWLMHKN----LCPICKT 650 (657)
Q Consensus 601 ~~~~~e~C~IClEef~d~d~v~~L---pCGHiFH~~CI~qWL~~k~----tCPICRt 650 (657)
....+..|.+|.+ .++ +..- .|-..||..|+. |.... .||.|+-
T Consensus 11 ~~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp CCSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred cCCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 3456778999973 233 2222 377899999997 44322 3776543
No 134
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=31.72 E-value=5.8 Score=32.57 Aligned_cols=45 Identities=22% Similarity=0.572 Sum_probs=27.7
Q ss_pred ccccccCCcCCCCceeEecCCChhcHHHHHHHHHc-----CCCCCCCCCC
Q 006188 607 PCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMH-----KNLCPICKTT 651 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~-----k~tCPICRts 651 (657)
.|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56788654222331111168899999999865542 2249999864
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.66 E-value=14 Score=36.52 Aligned_cols=35 Identities=20% Similarity=0.529 Sum_probs=26.0
Q ss_pred CCCccccccCCcCCCC-ceeEecCCChhcHHHHHHH
Q 006188 604 EQEPCCICQEEYNDGE-DTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 604 ~~e~C~IClEef~d~d-~v~~LpCGHiFH~~CI~qW 638 (657)
++..|.+|...|..-. ...+-.||++||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 3568999999997543 2234479999999997654
No 136
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.86 E-value=1.9 Score=38.40 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=30.9
Q ss_pred CccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCC----CCCCCCCCcC
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKN----LCPICKTTAL 653 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~----tCPICRtsLl 653 (657)
..|.||...-..+..+..-.|...||..|+.+=|.... .||.|+..+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 36888977644444233337999999999986444222 3998876543
No 137
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.31 E-value=22 Score=29.10 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCccccccCCcCCCCc-eeEecCCChhcHHHHHH
Q 006188 605 QEPCCICQEEYNDGED-TGILHCGHDFHTSCIKQ 637 (657)
Q Consensus 605 ~e~C~IClEef~d~d~-v~~LpCGHiFH~~CI~q 637 (657)
+..|.+|...|..-.. ...-.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999875431 22337999999999754
No 138
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.94 E-value=37 Score=29.82 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=34.7
Q ss_pred CccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 606 EPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 606 e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
..|..|...+.+....-...=|..||..|..+-+..+..|-.|.+.|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111133457789999999877776689999998864
No 139
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=28.30 E-value=19 Score=42.11 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=37.0
Q ss_pred CCCCccccccCCcCCCCc-------eeEecCCChh--------------------cHHHHHHHHH--------cCCCCCC
Q 006188 603 QEQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLM--------HKNLCPI 647 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~-------v~~LpCGHiF--------------------H~~CI~qWL~--------~k~tCPI 647 (657)
-+.-.|.-|+.|+.++.+ +.++.||-.| |.+|-.++-. +-..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 345689999999888764 4567888766 9999999864 2235999
Q ss_pred CCCCc
Q 006188 648 CKTTA 652 (657)
Q Consensus 648 CRtsL 652 (657)
|-=.+
T Consensus 184 CGP~l 188 (772)
T 4g9i_A 184 CGPSY 188 (772)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 97543
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.90 E-value=54 Score=26.98 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.....|..|.+.+.... +..-+..||.+| ..|-.|++.|..
T Consensus 23 ~~~~~C~~C~~~I~~~~---~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV---VKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCC---EESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccE---EEECCceECccC--------CEecCCCCCCCC
Confidence 34467888888776522 345677888777 357888877654
No 141
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=27.01 E-value=20 Score=41.22 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=36.7
Q ss_pred CCCCccccccCCcCCCCc-------eeEecCCChh--------------------cHHHHHHHHH--------cCCCCCC
Q 006188 603 QEQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLM--------HKNLCPI 647 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~-------v~~LpCGHiF--------------------H~~CI~qWL~--------~k~tCPI 647 (657)
-+.-.|.-|+.|+.++.+ +.++.||-.| |.+|-.++-. +-..||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 355679999999887664 4467788765 9999999764 2235999
Q ss_pred CCCCc
Q 006188 648 CKTTA 652 (657)
Q Consensus 648 CRtsL 652 (657)
|-=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96554
No 142
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=26.19 E-value=5.1 Score=31.87 Aligned_cols=41 Identities=34% Similarity=0.796 Sum_probs=24.2
Q ss_pred ccccccCCcCCCCceeEec--CC-ChhcHHHHHHHHHcC----CCCCCCCC
Q 006188 607 PCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMHK----NLCPICKT 650 (657)
Q Consensus 607 ~C~IClEef~d~d~v~~Lp--CG-HiFH~~CI~qWL~~k----~tCPICRt 650 (657)
.+.||..... +..+..=. |. ..||..|+. |... -.||.|++
T Consensus 11 ~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EETTTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEEECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3449987642 33111114 55 689999997 4432 24999865
No 143
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.15 E-value=9.9 Score=34.04 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=16.5
Q ss_pred EecCCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 623 ILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 623 ~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
+..||+.|. .=+.....||.|+..-.
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 456999981 11223456999998643
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=26.05 E-value=28 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=22.4
Q ss_pred CccccccCCcCC-------CCceeEecCCChhcHHHHHHH
Q 006188 606 EPCCICQEEYND-------GEDTGILHCGHDFHTSCIKQW 638 (657)
Q Consensus 606 e~C~IClEef~d-------~d~v~~LpCGHiFH~~CI~qW 638 (657)
..|.||+..-.. ++.+....|+..||..||...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999875411 222333479999999999754
No 145
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.86 E-value=21 Score=41.66 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=35.8
Q ss_pred CCCccccccCCcCCCCc-------eeEecCCChh--------------------cHHHHHHHHH--------cCCCCCCC
Q 006188 604 EQEPCCICQEEYNDGED-------TGILHCGHDF--------------------HTSCIKQWLM--------HKNLCPIC 648 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~-------v~~LpCGHiF--------------------H~~CI~qWL~--------~k~tCPIC 648 (657)
+.-.|.-|+.|+.++.+ +.++.||-.| |.+|-.++-. +-..||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 45679999999887764 4567888655 9999999753 22359999
Q ss_pred CCCc
Q 006188 649 KTTA 652 (657)
Q Consensus 649 RtsL 652 (657)
--.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 6543
No 146
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.73 E-value=39 Score=32.24 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCCCCCccccccCCcCCCCceeEe---cCCChhcHHHHHHHHHcC----------CCCCCCCCC
Q 006188 600 GSQQEQEPCCICQEEYNDGEDTGIL---HCGHDFHTSCIKQWLMHK----------NLCPICKTT 651 (657)
Q Consensus 600 ~~~~~~e~C~IClEef~d~d~v~~L---pCGHiFH~~CI~qWL~~k----------~tCPICRts 651 (657)
+.+..+..|.||-+. ++ +..- .|-..||..||+.++-.. =.|=+|.-.
T Consensus 74 DeDG~~~yC~wC~~G---g~-l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG---RE-VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC---SE-EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC---Ce-EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 344557789999643 33 2222 488999999999987431 138777643
No 147
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.40 E-value=18 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.6
Q ss_pred CCCCCCCCCCcCC
Q 006188 642 KNLCPICKTTALS 654 (657)
Q Consensus 642 k~tCPICRtsLl~ 654 (657)
+..||+|+..+++
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 4569999987764
No 148
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.94 E-value=44 Score=26.91 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=24.0
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCc
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTA 652 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsL 652 (657)
....|..|-+.+... .+..-+..||.+|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 346788887776642 23445677777663 477777665
No 149
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.75 E-value=11 Score=41.75 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCccccccCCcCCC-CceeEecCCChhcHHHHHHHHH-----cCCCCCCCCCC
Q 006188 605 QEPCCICQEEYNDG-EDTGILHCGHDFHTSCIKQWLM-----HKNLCPICKTT 651 (657)
Q Consensus 605 ~e~C~IClEef~d~-d~v~~LpCGHiFH~~CI~qWL~-----~k~tCPICRts 651 (657)
....|||...+... ..+.+-.|.--||..|+.---. .+-.||.|+..
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34455998877533 3344447999999999843221 22459999853
No 150
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.44 E-value=39 Score=26.87 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
...|..|-+.+...+.+ ..-+..||.+| ..|-.|++.|..
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCC--------CCCCCCCCccCC
Confidence 45688887777655532 24466777666 347777776653
No 151
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=22.28 E-value=7.1 Score=31.04 Aligned_cols=42 Identities=33% Similarity=0.725 Sum_probs=25.5
Q ss_pred CCccccccCCcCCCCceeEec--CC-ChhcHHHHHHHHHc----CCCCCCCCC
Q 006188 605 QEPCCICQEEYNDGEDTGILH--CG-HDFHTSCIKQWLMH----KNLCPICKT 650 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~Lp--CG-HiFH~~CI~qWL~~----k~tCPICRt 650 (657)
...| ||.... .++.+..=. |. ..||..|+. |.. +-.||.|++
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3445 998764 233222224 66 699999997 432 224999975
No 152
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.06 E-value=27 Score=27.90 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=29.2
Q ss_pred CCCccccccCCcCCCCceeEecCCChhcH-HHHHHHHHcCCCCCCCCCCc
Q 006188 604 EQEPCCICQEEYNDGEDTGILHCGHDFHT-SCIKQWLMHKNLCPICKTTA 652 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~~LpCGHiFH~-~CI~qWL~~k~tCPICRtsL 652 (657)
.-..|..|...+.... . ...=+.+||. .|..+- ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 4467888888876653 1 2335677888 587653 455688887554
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.92 E-value=57 Score=26.60 Aligned_cols=42 Identities=31% Similarity=0.545 Sum_probs=28.3
Q ss_pred CCCCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcCC
Q 006188 603 QEQEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTALS 654 (657)
Q Consensus 603 ~~~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl~ 654 (657)
.....|..|.+.+...+.+. .-+..||..| ..|-.|++.|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCC
Confidence 34567999988876665332 4567788877 357777776643
No 154
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.86 E-value=13 Score=29.76 Aligned_cols=39 Identities=18% Similarity=0.487 Sum_probs=27.1
Q ss_pred CCCccccccCCcCCCCcee---Eec--CCChhcHHHHHHHHHcC
Q 006188 604 EQEPCCICQEEYNDGEDTG---ILH--CGHDFHTSCIKQWLMHK 642 (657)
Q Consensus 604 ~~e~C~IClEef~d~d~v~---~Lp--CGHiFH~~CI~qWL~~k 642 (657)
....|+-|.-.++..+-.. ... |++.||..|..+|-...
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 3467888887776655222 223 89999999999987543
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.72 E-value=46 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCccccccCCcCCCCceeEecCCChhcHHHHHHHHHcCCCCCCCCCCcC
Q 006188 605 QEPCCICQEEYNDGEDTGILHCGHDFHTSCIKQWLMHKNLCPICKTTAL 653 (657)
Q Consensus 605 ~e~C~IClEef~d~d~v~~LpCGHiFH~~CI~qWL~~k~tCPICRtsLl 653 (657)
...|..|-+.+. ++ .+..-+..||.+|. .|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~-~~--~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GP--FLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SC--EEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ce--EEEECCccccccCC--------ccCCCCCCCC
Confidence 445666666653 22 12234556665552 4666665554
No 156
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.27 E-value=31 Score=32.81 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=15.5
Q ss_pred eeEecCCChhcHHHHHHHHHcCCCCCCCCCC
Q 006188 621 TGILHCGHDFHTSCIKQWLMHKNLCPICKTT 651 (657)
Q Consensus 621 v~~LpCGHiFH~~CI~qWL~~k~tCPICRts 651 (657)
..+..|||++-. ..-..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 345568888752 233479999864
Done!