BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006189
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
A Small Segment Of Adjacent Coiled-Coil Region
Length = 172
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 321 DTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFIL--YAAVRARHSYGPQGH 378
D + D ++V+P I++N K ++ + G +L + +IL + R R + GH
Sbjct: 2 DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGH 61
Query: 379 RGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKE 438
G +++ F G K + G + W L G K LYG++A +
Sbjct: 62 SGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDW-------LKKDGPKLGLYGWIARAD 114
Query: 439 DL---DVFNQHCH--GKTKQKFEMRS----YHEMVVNQIRQMSEDNQQ 477
D ++ ++ G K E+ E++V +RQ+ E+ ++
Sbjct: 115 DYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKK 162
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 626 EEVELEKGFDAELTQLMEKYSTHITEVAAD 655
+EV + GFD EL + KY THI V AD
Sbjct: 74 KEVLIVDGFDLELAHQLFKYDTHIDFVQAD 103
>pdb|3MMR|A Chain A, Structure Of Plasmodium Falciparum Arginase In Complex
With Abh
pdb|3SL0|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
2-Amino-6- Borono-2-(Difluoromethyl)hexanoic Acid
pdb|3SL1|A Chain A, Crystal Structure Of P. Falciparum Arginase Complexed With
2-Amino-6- Borono-2-Methylhexanoic Acid
Length = 413
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 480 YLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFK 539
Y+ N V+KE++H + V+ EEN ++ K ++ +
Sbjct: 110 YIPNGVIKEKKHDLSNNKMNGYVNHNFYGNYEENNVISTNDK-----------YKNNCYY 158
Query: 540 DQIRIIHEARDEKEENFEKLQQQEREK 566
D IR I E + F+ + + R+K
Sbjct: 159 DNIRNIKEIGIFSKNLFDTMSNELRKK 185
>pdb|2CJQ|A Chain A, Bovine Viral Diarrhea Virus Cp7-R12 Rna-Dependent Rna
Polymerase
Length = 720
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 340 RLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL 399
++DK+EN + G+ + +LLE F A RH+Y + + A G+LE + +
Sbjct: 172 KIDKNENQQSPGL-HDKLLEIFHTIAQPSLRHTYSDVTWEQLEAGVNRKGAAGFLEKKNV 230
Query: 400 ------HKHFAEQ 406
KH EQ
Sbjct: 231 GEVLDSEKHLVEQ 243
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 319 LKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHS 372
+ DT + H + W + ++ D+D N++ G+ +E LE +++ +++
Sbjct: 13 ITDTAEYHFLAWKHIAEQIDIPFDRDXNERLKGISREESLESILIFGGAETKYT 66
>pdb|1UX7|A Chain A, Carbohydrate-binding Module Cbm36 In Complex With Calcium
And Xylotriose
Length = 120
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 11 IAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYV 58
+ GS N + K V +SN + H +G +I L DDG W+ YV
Sbjct: 69 VTVGSFNFTGKTPTVQTLSN--ITHATGD-QEIKLALTSDDGTWDAYV 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,807,298
Number of Sequences: 62578
Number of extensions: 768021
Number of successful extensions: 1631
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1614
Number of HSP's gapped (non-prelim): 47
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)