BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006189
(657 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum
GN=SGS3 PE=1 SV=1
Length = 633
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/654 (55%), Positives = 464/654 (70%), Gaps = 42/654 (6%)
Query: 1 MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRK 60
MS + G P SN+S K K S V+ ++ V DI L+S Q++G WEVY RK
Sbjct: 1 MSFSKWGGKP-----SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARK 51
Query: 61 SKNKAGSGTTKSFGSQNS--------NYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVN 112
KNK GS K + QN N KAWGH D +K G R N SGR W+T +
Sbjct: 52 PKNKGGSSAGKQWAPQNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPS 111
Query: 113 ADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDK 172
K+ ARP L + + + P L++GW+W SR S H K
Sbjct: 112 DPQKL------ARPHLYD-----GGFPSSAPVPPALKNGWDWSSRVASA--------HPK 152
Query: 173 ESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKK 232
++ + D+ ++D E D++ + D+SDD+L SD+FDSD + S++TRKK+ WF +
Sbjct: 153 DNSQVAAAADDDKASEHDAE-DNELDFLDESDDDLHSDDFDSDVGEMSYETRKKNPWFNQ 211
Query: 233 FFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELA 292
F SL+SLTV EINEP RQWHCPAC+GGPGAI+W+ GLQ LMTHAKTKG RVK+HRELA
Sbjct: 212 LFHSLDSLTVTEINEPERQWHCPACKGGPGAIEWFTGLQSLMTHAKTKGL-RVKIHRELA 270
Query: 293 ELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGM 352
ELL+E+LR+RGTSV+P GEV+G+W G++ KD EIVWPPMVIIMNTRLDKDENDKW GM
Sbjct: 271 ELLEEDLRQRGTSVVPPGEVYGRWGGMEF--KDKEIVWPPMVIIMNTRLDKDENDKWIGM 328
Query: 353 GNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDS 412
GNQELLEYF YAAV+ARHSYGPQGHRGMS+LIFE+SA GY+EA+RL +HF+E G +RD+
Sbjct: 329 GNQELLEYFSSYAAVKARHSYGPQGHRGMSLLIFEASAVGYIEADRLSEHFSENGRNRDA 388
Query: 413 WNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMS 472
W R F+ GGKR LYG+MA K+D+D FNQH GK+K KFEMRSY E V N +QM
Sbjct: 389 W--ERRSARFYPGGKRLLYGYMADKKDIDNFNQHSAGKSKLKFEMRSYKEAVWNPAKQMR 446
Query: 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMD 532
EDNQQLI+ KN+ K Q +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+
Sbjct: 447 EDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEME 506
Query: 533 FQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFIT 592
FQEQ FKDQI+IIH+AR +E+NFEK QQ++RE VKQS AN + ED+++RAE++AKFI
Sbjct: 507 FQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIK 566
Query: 593 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 646
+QDKEMEEFV R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS
Sbjct: 567 LQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana
GN=SGS3 PE=1 SV=1
Length = 625
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/635 (56%), Positives = 456/635 (71%), Gaps = 30/635 (4%)
Query: 21 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN 79
K KNV +V+ L +A L S+QDDGG WEV +K+KNK G+ + K++ SQNSN
Sbjct: 10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSN 69
Query: 80 Y-KAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNM 138
+AWG Q+ G RG+ SGR + I A ++ R + + + N +
Sbjct: 70 PPRAWG----GQQQG-RGSNVSGRGNNVSGRGNGNGRGIQAN-ISGRGRALSRKYDNNFV 123
Query: 139 ATQTGIRPPLEHGWNWQSRAGSTIFKHSEDGHDKESGNLDEVHKDNVEDDYDD--EKDDD 196
A RPPLE GWNWQ+R GS ++ D VEDD D+ E+++D
Sbjct: 124 APPPVSRPPLEGGWNWQARGGSAQHTAVQEFPD-------------VEDDVDNASEEEND 170
Query: 197 SNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPA 256
S+ DDSDD+L SD++DSD SQKSH +RK+++WFKKFF SL+SL++E+INEP RQWHCPA
Sbjct: 171 SDALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPA 230
Query: 257 CQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPAGEVFGKW 316
CQ GPGAIDWY L PL+ HA+TKG++RVKLHRELAE+L+++L+ RG SVIP GE++G+W
Sbjct: 231 CQNGPGAIDWY-NLHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQW 289
Query: 317 KGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ 376
KGL + EKD+EIVWPPMVIIMNTRLDKD+NDKW GMGNQELLEYF Y A+RARHSYGPQ
Sbjct: 290 KGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQ 349
Query: 377 GHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMAL 436
GHRGMSVL+FESSA GYLEAERLH+ AE G DR +W +R +F +GG RQLYGF+A
Sbjct: 350 GHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW--GQKRSMF-SGGVRQLYGFLAT 406
Query: 437 KEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALE 496
K+DLD+FNQH GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE
Sbjct: 407 KQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLE 466
Query: 497 ATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENF 556
+ I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD ++ F D I+ IHE RD KEENF
Sbjct: 467 ESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENF 526
Query: 557 EKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHG 613
E LQQQER KV +Q NP + +D + RAEE++ FI Q+KEMEEFV R+ LIK
Sbjct: 527 EMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQE 586
Query: 614 EKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 648
+KM+ M++RH EE +LEK FD L QLM K+ H
Sbjct: 587 KKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621
>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. japonica GN=SGS3 PE=2 SV=1
Length = 609
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/541 (54%), Positives = 390/541 (72%), Gaps = 11/541 (2%)
Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
T V + PA R RP N E A + PL +GW W +R+
Sbjct: 71 TLVRHSDRRPA-RGTPRPPPQNRSIEAELQAPHGVVTAPLANGWQWGARS-------CPP 122
Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
G + + G L + + E D + D + +DD + LSD++DSD S+KS +TRK +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGYDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181
Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
FK FFE LE+L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241
Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
RELA LL+EEL RRGTSV+P+GE F KWKGL+++ D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLRES-TDREIVWPPMVVVMNTVLEQDEDDK 300
Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
W GMGNQEL++YF YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360
Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQI 468
DR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q+
Sbjct: 361 DRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQM 419
Query: 469 RQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK 528
+QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + +
Sbjct: 420 KQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYE 479
Query: 529 EEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIA 588
+EM +QE+ F DQI IH+A +EKE FEKL Q+ER K +QS + +TED + R E+I
Sbjct: 480 KEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQ 539
Query: 589 KFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 648
FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+
Sbjct: 540 NFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPD 599
Query: 649 I 649
I
Sbjct: 600 I 600
>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3
PE=1 SV=1
Length = 594
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/525 (55%), Positives = 388/525 (73%), Gaps = 15/525 (2%)
Query: 133 PETNNMATQTGIRPPLEHGWNWQSR---AGSTIFKHSEDGHDKESGNLDEVHKDNVEDDY 189
P + ++ + PPL +GW WQSR +GS + K SG++ EV +NV+ +
Sbjct: 81 PRPPSQTSRPVLAPPLANGWQWQSRPRPSGSEVKKDDAP----PSGSVPEV--ENVDGN- 133
Query: 190 DDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPA 249
DD + DD + +SD++DSD S+KS +TRK ++WFK+FFE L +L++E+INE
Sbjct: 134 --NTSDDDDDDDDDLSDDISDDYDSDASEKSFETRKTNKWFKEFFEVLNTLSLEQINEQT 191
Query: 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEELRRRGTSVIPA 309
RQWHCPAC+ GPGAIDWY+GLQPL++HA+TKGS RVKLHRELA LL+EEL RRGTSV+PA
Sbjct: 192 RQWHCPACKNGPGAIDWYKGLQPLVSHARTKGSTRVKLHRELAALLEEELSRRGTSVLPA 251
Query: 310 GEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRA 369
GE FGKWKGL+++ D EIVWPPMVI+MNT L+KDE+DKW GMGNQELL+YF Y A +A
Sbjct: 252 GEQFGKWKGLQES-TDREIVWPPMVIVMNTFLEKDEDDKWKGMGNQELLDYFGEYEASKA 310
Query: 370 RHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDRDSWNNSNRRVLFHAGGKRQ 429
RH+YGP GHRGMSVLIFESSA GY+EAERLHKHF QGTDR+SW+ R+V F GGKRQ
Sbjct: 311 RHAYGPSGHRGMSVLIFESSAVGYMEAERLHKHFVNQGTDRNSWHL--RKVRFVPGGKRQ 368
Query: 430 LYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQ 489
LYGF+A KED++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK +
Sbjct: 369 LYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTE 428
Query: 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEAR 549
+ SKA+E + +V++KLRET+EEN V+ + K +H + +EEM QE++F I IH+A
Sbjct: 429 QRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKAT 488
Query: 550 DEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 609
++KE+ FEKL Q+ER K ++ + +D +LR E + KFI Q K++ EF RD LI
Sbjct: 489 EDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELI 548
Query: 610 KFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 654
K H +K +++ + + E+ELEK FDA LT LMEK+ E ++
Sbjct: 549 KVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593
>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa
subsp. indica GN=SGS3 PE=3 SV=1
Length = 609
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 293/541 (54%), Positives = 388/541 (71%), Gaps = 11/541 (2%)
Query: 109 TTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSED 168
T V + PA R RP N A + + PL +GW W +R+
Sbjct: 71 TLVRHSDRRPA-RGTPRPPPQNRSTGAELQAPRGVVTAPLANGWQWGARS-------CPP 122
Query: 169 GHDKESGNLDEVHKDNVEDDYDDEKDDDSNVSDDSDDELLSDEFDSDTSQKSHDTRKKSR 228
G + + G L + + E D + D + +DD + LSD++DSD S+KS +TRK +
Sbjct: 123 GTESKEGGLP-LSGCDPETDNAEGDDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHK 181
Query: 229 WFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLH 288
FK FFE L++L+VE++NEP RQWHCPAC+ GPGAIDWY+GLQPLMTHAKTKGS +VK H
Sbjct: 182 LFKGFFEVLDALSVEQLNEPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRH 241
Query: 289 RELAELLDEELRRRGTSVIPAGEVFGKWKGLKDTEKDHEIVWPPMVIIMNTRLDKDENDK 348
RELA LL+EEL RRGTSV+P+GE F KWKGL++ D EIVWPPMV++MNT L++DE+DK
Sbjct: 242 RELASLLEEELSRRGTSVVPSGEQFRKWKGLREG-TDREIVWPPMVVVMNTVLEQDEDDK 300
Query: 349 WTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGT 408
W GMGNQEL++YF YAA +ARH+YGP GHRGMSVLIF+SSA GY+EAERLH HF Q T
Sbjct: 301 WKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRT 360
Query: 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQI 468
DR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q+
Sbjct: 361 DRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQM 419
Query: 469 RQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK 528
+QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + +
Sbjct: 420 KQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYE 479
Query: 529 EEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIA 588
+EM +QE+ F DQI IH+ +EKE FEKL Q+ER K +QS + +TED + R E+I
Sbjct: 480 KEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQ 539
Query: 589 KFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 648
FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+
Sbjct: 540 NFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPD 599
Query: 649 I 649
I
Sbjct: 600 I 600
>sp|Q9ESK9|RBCC1_MOUSE RB1-inducible coiled-coil protein 1 OS=Mus musculus GN=Rb1cc1 PE=1
SV=3
Length = 1588
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 29/202 (14%)
Query: 471 MSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVK----QRTKMQHEQ 526
M++ N L LK +QR + LE+ S + EK ++ E V R K++ E
Sbjct: 1003 MTDHNMSLEKLKKE--NQQRIDQMLESHASTIQEKEQQLQELKLKVSDLSDMRCKLEVEL 1060
Query: 527 NKEEMDFQEQLFKDQIRII-HEARDEKEENFEKLQQQEREKVKQSIA--NPK---NTEDY 580
+E + D+I+I+ E+R +++E + L +QE E ++ I+ N K N E Y
Sbjct: 1061 ALKEAE------TDEIKILLEESRTQQKEMLKSLLEQETENLRTEISKLNQKIHDNNESY 1114
Query: 581 KLRAEEIAKFITVQ-DKEMEEFVAARDR---LIKFHGEKMDAMRRRHWEEE-------VE 629
++ E+ +T++ D+ + E ++ + ++K + + ++ R+ +E E VE
Sbjct: 1115 QVGLSELRALMTIEKDQCISELISRHEEESNILKAELDNVTSLHRQAYEIEKKLKEQIVE 1174
Query: 630 LEKGFDAELTQLMEKYSTHITE 651
L+ ++EL+ L ++ IT+
Sbjct: 1175 LQTRLNSELSALEKQKDEKITQ 1196
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 OS=Homo sapiens GN=RB1CC1 PE=1
SV=3
Length = 1594
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 69/129 (53%), Gaps = 17/129 (13%)
Query: 540 DQIRII-HEARDEKEENFEKLQQQEREKVKQSIA--NPK---NTEDYKLRAEEIAKFITV 593
D+I+I+ E+R +++E + L +QE E ++ I+ N K N E+Y++ E+ +T+
Sbjct: 1072 DEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQVGLAELRTLMTI 1131
Query: 594 Q-DKEMEEFVAARDR---LIKFHGEKMDAMRRRHWEEE-------VELEKGFDAELTQLM 642
+ D+ + E ++ + ++K K+ ++ + +E E +EL+ D+EL+ L
Sbjct: 1132 EKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSALE 1191
Query: 643 EKYSTHITE 651
+ IT+
Sbjct: 1192 RQKDEKITQ 1200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,807,112
Number of Sequences: 539616
Number of extensions: 11797322
Number of successful extensions: 76845
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 1682
Number of HSP's that attempted gapping in prelim test: 55809
Number of HSP's gapped (non-prelim): 15732
length of query: 657
length of database: 191,569,459
effective HSP length: 124
effective length of query: 533
effective length of database: 124,657,075
effective search space: 66442220975
effective search space used: 66442220975
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)