Query 006189
Match_columns 657
No_of_seqs 146 out of 163
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 19:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03468 XS: XS domain; Inter 100.0 1.5E-44 3.3E-49 329.4 6.0 115 324-445 1-115 (116)
2 PF03470 zf-XS: XS zinc finger 99.4 1.1E-13 2.5E-18 107.0 1.7 36 254-292 1-43 (43)
3 KOG0995 Centromere-associated 96.9 0.11 2.3E-06 59.5 21.2 154 462-643 217-382 (581)
4 COG5185 HEC1 Protein involved 95.5 1.7 3.7E-05 49.4 20.3 154 464-646 255-420 (622)
5 PF14988 DUF4515: Domain of un 95.4 1.6 3.6E-05 44.4 18.6 127 475-640 3-130 (206)
6 PF15066 CAGE1: Cancer-associa 95.4 0.72 1.6E-05 52.1 16.9 102 460-570 371-478 (527)
7 KOG1265 Phospholipase C [Lipid 95.2 2 4.3E-05 52.0 20.6 50 596-645 1128-1177(1189)
8 KOG1029 Endocytic adaptor prot 94.4 3.7 7.9E-05 49.2 19.9 52 598-650 565-616 (1118)
9 PF13851 GAS: Growth-arrest sp 92.6 5.1 0.00011 40.6 15.4 102 473-581 83-184 (201)
10 PRK11637 AmiB activator; Provi 91.7 25 0.00054 39.0 23.4 35 476-510 75-109 (428)
11 PF12128 DUF3584: Protein of u 91.7 25 0.00053 44.3 22.7 41 599-639 724-764 (1201)
12 PRK11637 AmiB activator; Provi 91.5 26 0.00056 38.9 21.3 29 474-502 80-108 (428)
13 PF15619 Lebercilin: Ciliary p 90.6 22 0.00047 36.2 21.6 159 469-628 5-171 (194)
14 PF13851 GAS: Growth-arrest sp 90.0 24 0.00052 35.8 20.9 63 452-514 9-72 (201)
15 PF12128 DUF3584: Protein of u 89.1 74 0.0016 40.3 25.0 95 468-562 344-443 (1201)
16 KOG1029 Endocytic adaptor prot 89.0 21 0.00046 43.2 17.7 32 475-506 436-467 (1118)
17 KOG0250 DNA repair protein RAD 88.7 76 0.0016 39.8 22.8 48 240-297 40-88 (1074)
18 KOG1265 Phospholipase C [Lipid 88.1 36 0.00077 42.0 18.9 55 587-641 1130-1184(1189)
19 KOG4673 Transcription factor T 88.0 49 0.0011 39.8 19.6 132 473-616 350-504 (961)
20 KOG4637 Adaptor for phosphoino 85.9 67 0.0014 36.3 18.9 57 344-406 42-102 (464)
21 COG1579 Zn-ribbon protein, pos 85.9 51 0.0011 34.9 19.5 23 622-644 160-182 (239)
22 PF05483 SCP-1: Synaptonemal c 85.3 83 0.0018 37.9 19.6 31 532-562 586-616 (786)
23 PRK12704 phosphodiesterase; Pr 85.2 80 0.0017 36.6 21.3 27 628-654 184-210 (520)
24 PF10174 Cast: RIM-binding pro 85.1 1E+02 0.0022 37.7 22.6 70 571-643 425-497 (775)
25 PF08703 PLC-beta_C: PLC-beta 84.9 48 0.0011 33.8 22.1 48 598-645 107-154 (185)
26 PF14942 Muted: Organelle biog 83.4 47 0.001 32.5 14.5 43 581-630 103-145 (145)
27 KOG0996 Structural maintenance 81.9 1.6E+02 0.0035 37.6 20.9 60 585-645 938-1000(1293)
28 PRK00732 fliE flagellar hook-b 81.6 4.8 0.00011 37.1 6.6 69 459-534 33-101 (102)
29 PF00076 RRM_1: RNA recognitio 81.1 4.3 9.3E-05 31.9 5.4 55 334-398 1-57 (70)
30 PF14259 RRM_6: RNA recognitio 81.0 5.9 0.00013 31.8 6.3 58 334-401 1-60 (70)
31 PF09726 Macoilin: Transmembra 81.0 72 0.0016 38.4 17.5 61 452-512 429-489 (697)
32 PRK00409 recombination and DNA 80.7 34 0.00074 41.4 15.0 40 523-562 557-596 (782)
33 PF07888 CALCOCO1: Calcium bin 80.7 1.3E+02 0.0027 35.5 22.1 20 481-500 141-160 (546)
34 TIGR03319 YmdA_YtgF conserved 80.6 1.2E+02 0.0026 35.2 21.3 27 628-654 178-204 (514)
35 KOG0163 Myosin class VI heavy 79.9 69 0.0015 39.1 16.4 12 403-414 738-749 (1259)
36 PRK12729 fliE flagellar hook-b 79.7 12 0.00026 36.0 8.7 95 428-533 29-126 (127)
37 PF09731 Mitofilin: Mitochondr 79.5 1.3E+02 0.0027 34.8 19.7 12 490-501 258-269 (582)
38 PF05667 DUF812: Protein of un 79.4 1.4E+02 0.003 35.5 18.8 39 474-512 326-364 (594)
39 KOG3130 Uncharacterized conser 79.1 1.3 2.8E-05 49.4 2.4 11 84-94 169-179 (514)
40 PF07888 CALCOCO1: Calcium bin 78.9 1.4E+02 0.0031 35.1 23.9 35 478-512 173-207 (546)
41 KOG4364 Chromatin assembly fac 78.6 50 0.0011 39.6 14.7 17 633-649 370-386 (811)
42 PF02049 FliE: Flagellar hook- 78.6 7.7 0.00017 34.8 6.8 75 453-534 20-95 (96)
43 COG1196 Smc Chromosome segrega 78.3 1.5E+02 0.0033 37.4 20.0 13 286-298 530-542 (1163)
44 PF09738 DUF2051: Double stran 78.2 37 0.00081 36.8 12.9 67 537-614 109-175 (302)
45 KOG4603 TBP-1 interacting prot 77.6 19 0.00041 36.6 9.7 124 433-559 66-197 (201)
46 KOG0943 Predicted ubiquitin-pr 77.5 1.7 3.6E-05 54.0 2.8 14 55-68 1627-1640(3015)
47 KOG0717 Molecular chaperone (D 77.1 66 0.0014 37.1 14.8 115 515-642 223-346 (508)
48 KOG2129 Uncharacterized conser 76.9 66 0.0014 36.8 14.5 94 473-571 198-315 (552)
49 KOG3612 PHD Zn-finger protein 76.6 16 0.00034 42.5 9.9 76 542-625 455-530 (588)
50 PF04065 Not3: Not1 N-terminal 76.2 1.1E+02 0.0023 32.3 18.1 128 481-614 6-154 (233)
51 PF15254 CCDC14: Coiled-coil d 76.1 40 0.00086 40.9 13.3 11 633-643 533-543 (861)
52 TIGR02169 SMC_prok_A chromosom 76.0 2E+02 0.0043 35.2 23.1 7 355-361 120-126 (1164)
53 PF14817 HAUS5: HAUS augmin-li 75.6 29 0.00063 41.2 12.1 81 461-544 74-154 (632)
54 PRK00790 fliE flagellar hook-b 75.4 9.3 0.0002 35.7 6.6 70 458-534 39-108 (109)
55 PRK03907 fliE flagellar hook-b 74.8 10 0.00022 34.9 6.5 70 458-534 26-96 (97)
56 PF05605 zf-Di19: Drought indu 74.7 1.6 3.4E-05 35.1 1.2 23 250-279 1-23 (54)
57 KOG0250 DNA repair protein RAD 74.6 2E+02 0.0044 36.4 18.9 20 346-365 153-172 (1074)
58 PF10146 zf-C4H2: Zinc finger- 74.0 1.2E+02 0.0026 31.8 15.2 54 509-562 20-75 (230)
59 KOG0996 Structural maintenance 74.0 2.7E+02 0.0058 35.8 22.5 62 449-512 225-296 (1293)
60 KOG2991 Splicing regulator [RN 73.4 77 0.0017 34.2 13.3 53 519-572 244-309 (330)
61 TIGR03185 DNA_S_dndD DNA sulfu 73.1 83 0.0018 37.0 15.0 32 481-512 389-420 (650)
62 PF05667 DUF812: Protein of un 72.7 2.1E+02 0.0045 34.0 18.9 67 539-610 453-519 (594)
63 PF07111 HCR: Alpha helical co 72.6 1.4E+02 0.003 36.2 16.3 136 454-599 139-287 (739)
64 TIGR00205 fliE flagellar hook- 71.7 12 0.00026 34.9 6.4 69 459-534 38-108 (108)
65 KOG0163 Myosin class VI heavy 71.6 2.6E+02 0.0056 34.6 19.2 36 583-619 948-983 (1259)
66 PRK12728 fliE flagellar hook-b 70.4 16 0.00035 33.7 6.8 72 456-534 29-101 (102)
67 TIGR01069 mutS2 MutS2 family p 69.8 77 0.0017 38.4 14.1 35 527-561 556-590 (771)
68 KOG0612 Rho-associated, coiled 69.1 3.4E+02 0.0075 35.0 20.3 12 270-281 332-343 (1317)
69 PRK00253 fliE flagellar hook-b 68.7 16 0.00035 34.0 6.5 70 458-534 36-107 (108)
70 PHA03346 US22 family homolog; 68.6 8.5 0.00018 44.5 5.6 13 115-127 392-404 (520)
71 smart00362 RRM_2 RNA recogniti 68.2 14 0.00031 28.0 5.2 47 334-389 2-49 (72)
72 KOG1937 Uncharacterized conser 68.1 2.4E+02 0.0052 32.8 16.8 73 544-621 356-428 (521)
73 PF10168 Nup88: Nuclear pore c 68.1 2.8E+02 0.0061 33.6 19.5 25 274-298 383-407 (717)
74 KOG0239 Kinesin (KAR3 subfamil 67.5 1.7E+02 0.0037 35.2 16.1 44 583-631 270-313 (670)
75 PF05483 SCP-1: Synaptonemal c 67.0 3E+02 0.0065 33.5 19.8 61 452-520 90-150 (786)
76 KOG0979 Structural maintenance 66.1 3.6E+02 0.0079 34.1 20.9 76 455-536 618-693 (1072)
77 TIGR01069 mutS2 MutS2 family p 65.9 89 0.0019 37.9 13.5 7 208-214 140-146 (771)
78 COG1677 FliE Flagellar hook-ba 65.5 26 0.00056 32.6 7.1 69 459-534 35-104 (105)
79 KOG0943 Predicted ubiquitin-pr 65.0 3.7 8E-05 51.3 1.9 24 391-414 2006-2029(3015)
80 KOG1832 HIV-1 Vpr-binding prot 65.0 3.4 7.4E-05 50.3 1.7 10 98-107 1271-1280(1516)
81 PF08614 ATG16: Autophagy prot 64.7 1.3E+02 0.0027 30.2 12.4 83 478-564 104-186 (194)
82 PF09730 BicD: Microtubule-ass 64.5 3.3E+02 0.0073 33.2 19.5 124 474-599 25-148 (717)
83 KOG1850 Myosin-like coiled-coi 64.0 2.4E+02 0.0053 31.4 19.3 32 615-646 201-232 (391)
84 COG1196 Smc Chromosome segrega 63.9 4E+02 0.0086 33.9 23.1 34 473-506 818-851 (1163)
85 KOG0963 Transcription factor/C 63.8 3.2E+02 0.007 32.8 21.3 90 473-564 179-270 (629)
86 PF08317 Spc7: Spc7 kinetochor 63.7 2.2E+02 0.0048 30.8 16.2 6 409-414 135-140 (325)
87 PF04931 DNA_pol_phi: DNA poly 63.4 4.6 0.0001 48.3 2.4 6 54-59 512-517 (784)
88 TIGR02168 SMC_prok_B chromosom 63.2 3.5E+02 0.0076 33.0 22.5 10 385-394 141-150 (1179)
89 PF03115 Astro_capsid: Astrovi 63.0 2.4 5.2E-05 50.9 0.0 22 253-278 734-755 (787)
90 PF06008 Laminin_I: Laminin Do 62.5 2E+02 0.0043 29.9 18.7 173 457-629 54-242 (264)
91 PF08702 Fib_alpha: Fibrinogen 60.9 1.4E+02 0.003 29.2 11.5 25 538-562 102-126 (146)
92 PRK01482 fliE flagellar hook-b 60.7 38 0.00081 31.8 7.3 74 453-533 32-107 (108)
93 PF13894 zf-C2H2_4: C2H2-type 60.6 4.6 0.0001 25.8 1.0 20 252-277 1-20 (24)
94 PF04931 DNA_pol_phi: DNA poly 60.1 5.5 0.00012 47.6 2.3 8 289-296 739-746 (784)
95 KOG0577 Serine/threonine prote 60.1 4E+02 0.0086 32.6 16.7 52 516-567 740-793 (948)
96 KOG4643 Uncharacterized coiled 59.8 4.7E+02 0.01 33.3 21.0 91 452-547 254-353 (1195)
97 smart00806 AIP3 Actin interact 59.8 2.2E+02 0.0048 32.7 14.3 158 463-651 240-412 (426)
98 TIGR00606 rad50 rad50. This fa 59.5 4.9E+02 0.011 33.5 22.4 42 598-639 392-433 (1311)
99 PRK03918 chromosome segregatio 59.0 3.9E+02 0.0085 32.1 22.4 27 480-506 197-223 (880)
100 PF03915 AIP3: Actin interacti 59.0 1.5E+02 0.0033 33.8 13.0 161 473-652 243-411 (424)
101 KOG4360 Uncharacterized coiled 58.5 1.6E+02 0.0036 34.5 13.1 86 473-566 209-294 (596)
102 PF08702 Fib_alpha: Fibrinogen 58.2 1.9E+02 0.0041 28.3 16.3 15 496-510 77-91 (146)
103 KOG0976 Rho/Rac1-interacting s 58.1 4.6E+02 0.01 32.8 20.5 65 586-650 334-403 (1265)
104 KOG2856 Adaptor protein PACSIN 57.7 3.4E+02 0.0073 31.0 15.2 121 504-640 83-234 (472)
105 KOG0577 Serine/threonine prote 57.6 4.3E+02 0.0094 32.3 21.2 57 455-511 464-526 (948)
106 PRK00106 hypothetical protein; 57.5 3.8E+02 0.0083 31.6 23.5 29 626-654 197-225 (535)
107 PF11559 ADIP: Afadin- and alp 57.4 1.8E+02 0.0039 27.7 14.3 83 476-562 66-148 (151)
108 PF03153 TFIIA: Transcription 57.2 3.7 7.9E-05 44.5 0.1 12 244-256 341-352 (375)
109 KOG0804 Cytoplasmic Zn-finger 56.8 2.9E+02 0.0063 32.1 14.5 40 525-564 403-445 (493)
110 PF07061 Swi5: Swi5; InterPro 56.8 24 0.00051 31.5 5.1 15 514-528 36-50 (83)
111 PF14812 PBP1_TM: Transmembran 56.2 2.5 5.4E-05 37.7 -1.1 12 223-234 61-72 (81)
112 KOG0161 Myosin class II heavy 56.0 6.9E+02 0.015 34.1 22.7 47 593-639 1505-1551(1930)
113 KOG4657 Uncharacterized conser 55.2 2.6E+02 0.0057 29.7 12.9 85 474-562 43-144 (246)
114 PF00038 Filament: Intermediat 54.9 2.8E+02 0.006 29.2 14.1 168 466-643 1-172 (312)
115 KOG0161 Myosin class II heavy 54.4 7.3E+02 0.016 33.9 22.4 28 67-94 207-234 (1930)
116 PF10168 Nup88: Nuclear pore c 54.3 1.7E+02 0.0038 35.4 13.2 26 250-281 363-395 (717)
117 TIGR01661 ELAV_HUD_SF ELAV/HuD 54.2 26 0.00056 36.8 5.8 52 333-393 271-325 (352)
118 COG3883 Uncharacterized protei 54.2 3.1E+02 0.0068 29.6 20.7 88 542-634 89-192 (265)
119 KOG0977 Nuclear envelope prote 53.5 4.5E+02 0.0098 31.2 19.6 41 595-639 334-374 (546)
120 PF15070 GOLGA2L5: Putative go 53.1 4.3E+02 0.0093 31.7 15.9 50 586-644 98-147 (617)
121 PRK04863 mukB cell division pr 52.7 6.9E+02 0.015 33.1 21.9 28 615-643 457-484 (1486)
122 PF05911 DUF869: Plant protein 52.4 5.4E+02 0.012 31.8 17.6 74 473-567 21-94 (769)
123 KOG2150 CCR4-NOT transcription 52.4 4.8E+02 0.01 31.1 17.8 50 515-566 36-97 (575)
124 KOG3064 RNA-binding nuclear pr 52.3 7.8 0.00017 41.4 1.6 24 196-219 237-261 (303)
125 PF04147 Nop14: Nop14-like fam 52.1 10 0.00022 46.1 2.7 10 249-258 419-428 (840)
126 KOG4572 Predicted DNA-binding 51.8 5.5E+02 0.012 32.2 16.3 107 452-567 891-1003(1424)
127 PRK04863 mukB cell division pr 51.8 7.1E+02 0.015 33.0 22.1 9 291-299 197-205 (1486)
128 COG5185 HEC1 Protein involved 51.1 4.7E+02 0.01 30.8 16.6 53 551-612 365-419 (622)
129 PF03670 UPF0184: Uncharacteri 51.1 71 0.0015 28.9 7.1 43 476-518 26-68 (83)
130 PLN03188 kinesin-12 family pro 50.7 7E+02 0.015 32.6 18.6 27 597-623 1226-1252(1320)
131 KOG3130 Uncharacterized conser 50.7 14 0.00031 41.6 3.3 15 198-212 286-300 (514)
132 PF06705 SF-assemblin: SF-asse 50.4 3.1E+02 0.0067 28.4 21.2 26 615-640 147-172 (247)
133 cd07605 I-BAR_IMD Inverse (I)- 49.9 2.8E+02 0.006 29.0 12.3 46 475-520 93-142 (223)
134 KOG0979 Structural maintenance 49.8 2.3E+02 0.0049 35.8 13.1 28 478-505 271-298 (1072)
135 KOG0995 Centromere-associated 49.8 5.2E+02 0.011 30.8 22.0 55 452-506 270-324 (581)
136 PF08598 Sds3: Sds3-like; Int 49.7 33 0.00071 34.0 5.5 105 530-635 7-111 (205)
137 PRK00409 recombination and DNA 49.5 3.2E+02 0.007 33.3 14.5 30 207-236 144-173 (782)
138 PF12344 UvrB: Ultra-violet re 49.5 22 0.00047 28.6 3.3 26 501-529 5-30 (44)
139 KOG1189 Global transcriptional 49.2 17 0.00037 43.8 3.8 11 149-159 865-875 (960)
140 KOG2398 Predicted proline-seri 49.1 5.4E+02 0.012 30.8 18.1 33 480-512 44-76 (611)
141 KOG0579 Ste20-like serine/thre 48.7 6.2E+02 0.013 31.3 21.5 23 601-623 936-958 (1187)
142 COG2811 NtpF Archaeal/vacuolar 48.2 2.5E+02 0.0054 26.7 10.8 68 536-626 25-92 (108)
143 TIGR00165 S18 ribosomal protei 48.0 26 0.00057 30.5 3.8 44 253-297 7-58 (70)
144 PF08614 ATG16: Autophagy prot 47.4 2.1E+02 0.0045 28.7 10.7 85 477-562 89-173 (194)
145 COG5406 Nucleosome binding fac 46.8 17 0.00037 43.2 3.3 9 148-156 916-924 (1001)
146 KOG1994 Predicted RNA binding 46.7 12 0.00025 39.5 1.8 27 249-281 237-263 (268)
147 KOG2129 Uncharacterized conser 46.6 5.2E+02 0.011 30.0 17.5 62 478-546 52-114 (552)
148 KOG4643 Uncharacterized coiled 46.4 7.5E+02 0.016 31.7 21.8 52 479-530 397-448 (1195)
149 cd09235 V_Alix Middle V-domain 45.5 4.4E+02 0.0095 28.7 18.9 133 478-615 71-217 (339)
150 PF00096 zf-C2H2: Zinc finger, 45.4 9.3 0.0002 25.0 0.6 20 252-277 1-20 (23)
151 PF15397 DUF4618: Domain of un 45.2 4.3E+02 0.0092 28.5 17.4 41 452-495 67-107 (258)
152 KOG2911 Uncharacterized conser 44.4 5.6E+02 0.012 29.6 15.5 142 471-635 228-380 (439)
153 KOG4005 Transcription factor X 44.0 1.6E+02 0.0035 31.5 9.5 42 486-534 86-127 (292)
154 PF14943 MRP-S26: Mitochondria 43.8 3.6E+02 0.0077 27.2 12.0 28 522-549 32-59 (170)
155 KOG1824 TATA-binding protein-i 43.8 13 0.00027 45.9 1.7 15 471-485 591-605 (1233)
156 KOG4360 Uncharacterized coiled 43.6 4.5E+02 0.0098 31.1 13.6 63 494-560 202-264 (596)
157 TIGR00606 rad50 rad50. This fa 43.3 8.5E+02 0.018 31.4 20.8 19 477-495 766-784 (1311)
158 PRK06397 V-type ATP synthase s 43.0 2.9E+02 0.0064 26.0 11.7 41 583-626 55-95 (111)
159 PHA02562 46 endonuclease subun 42.9 5.5E+02 0.012 29.1 24.6 36 477-512 189-224 (562)
160 PF13912 zf-C2H2_6: C2H2-type 42.8 11 0.00023 25.7 0.6 22 251-278 1-22 (27)
161 COG1340 Uncharacterized archae 42.7 5E+02 0.011 28.6 19.4 156 472-644 30-201 (294)
162 PF10058 DUF2296: Predicted in 42.7 19 0.00041 29.7 2.1 10 249-258 42-51 (54)
163 KOG0994 Extracellular matrix g 42.5 9.2E+02 0.02 31.6 20.5 12 268-279 1299-1310(1758)
164 PRK01699 fliE flagellar hook-b 42.4 40 0.00086 31.1 4.4 37 491-534 62-98 (99)
165 PTZ00266 NIMA-related protein 42.3 4.5E+02 0.0098 33.4 14.4 9 326-334 291-299 (1021)
166 KOG0742 AAA+-type ATPase [Post 42.1 6.4E+02 0.014 29.6 16.8 10 597-606 208-217 (630)
167 PF10174 Cast: RIM-binding pro 42.0 7.6E+02 0.017 30.5 20.2 17 385-401 269-286 (775)
168 PF06156 DUF972: Protein of un 41.9 1.6E+02 0.0034 27.6 8.2 32 486-517 11-42 (107)
169 PLN03120 nucleic acid binding 41.5 59 0.0013 34.8 6.1 58 333-401 6-64 (260)
170 PF07106 TBPIP: Tat binding pr 41.1 2.9E+02 0.0062 26.9 10.3 33 473-505 76-108 (169)
171 KOG0612 Rho-associated, coiled 41.0 9.5E+02 0.021 31.4 19.5 6 250-255 298-303 (1317)
172 PRK13401 30S ribosomal protein 40.5 38 0.00082 30.5 3.8 45 252-297 14-66 (82)
173 PF03115 Astro_capsid: Astrovi 40.1 9.5 0.0002 46.1 0.0 6 235-240 716-721 (787)
174 smart00017 OSTEO Osteopontin. 39.9 16 0.00036 38.6 1.7 37 248-290 119-155 (287)
175 KOG0982 Centrosomal protein Nu 39.8 6.7E+02 0.014 29.2 17.3 49 481-535 220-270 (502)
176 PF13747 DUF4164: Domain of un 39.4 1.3E+02 0.0027 27.2 7.0 44 473-516 43-86 (89)
177 PF04949 Transcrip_act: Transc 39.3 4.1E+02 0.009 26.7 13.7 56 570-632 77-144 (159)
178 COG5665 NOT5 CCR4-NOT transcri 39.3 3E+02 0.0064 31.5 11.0 90 474-563 30-135 (548)
179 KOG0964 Structural maintenance 38.9 9.6E+02 0.021 30.8 20.5 24 433-458 632-656 (1200)
180 KOG4848 Extracellular matrix-a 38.8 4.8E+02 0.01 27.3 12.5 33 530-562 141-175 (225)
181 PF09726 Macoilin: Transmembra 38.7 8.1E+02 0.017 29.9 22.0 27 477-503 475-501 (697)
182 PRK02224 chromosome segregatio 38.6 7.9E+02 0.017 29.8 23.7 189 457-645 208-421 (880)
183 PRK00391 rpsR 30S ribosomal pr 38.6 43 0.00094 29.8 3.9 45 250-296 13-66 (79)
184 KOG4466 Component of histone d 38.5 4E+02 0.0086 29.2 11.5 91 532-624 27-118 (291)
185 PHA03249 DNA packaging tegumen 37.9 5.3E+02 0.012 31.0 13.2 36 474-512 413-448 (653)
186 KOG4809 Rab6 GTPase-interactin 37.8 3.4E+02 0.0074 32.3 11.6 86 469-567 470-562 (654)
187 KOG0964 Structural maintenance 37.8 9.9E+02 0.022 30.6 18.0 34 474-507 326-359 (1200)
188 PF03962 Mnd1: Mnd1 family; I 37.3 4.4E+02 0.0095 26.7 11.2 38 475-512 61-98 (188)
189 PRK10361 DNA recombination pro 37.3 7.3E+02 0.016 29.0 21.7 23 539-561 98-120 (475)
190 PF15358 TSKS: Testis-specific 36.9 1.1E+02 0.0024 35.0 7.4 51 456-509 108-158 (558)
191 PLN03121 nucleic acid binding 36.7 68 0.0015 34.1 5.5 59 332-400 6-64 (243)
192 PF04111 APG6: Autophagy prote 36.7 5.1E+02 0.011 28.2 12.3 9 478-486 11-19 (314)
193 KOG0579 Ste20-like serine/thre 36.6 9.3E+02 0.02 29.9 22.9 66 571-643 1058-1123(1187)
194 PF12329 TMF_DNA_bd: TATA elem 36.2 2.5E+02 0.0054 24.4 8.1 51 460-514 14-64 (74)
195 PF06631 DUF1154: Protein of u 36.2 49 0.0011 27.0 3.4 24 608-631 23-46 (47)
196 PF08549 SWI-SNF_Ssr4: Fungal 36.1 80 0.0017 37.8 6.5 36 583-621 361-396 (669)
197 TIGR01661 ELAV_HUD_SF ELAV/HuD 35.1 75 0.0016 33.4 5.7 47 334-389 6-55 (352)
198 KOG0018 Structural maintenance 34.7 1.1E+03 0.024 30.3 22.3 27 578-604 803-829 (1141)
199 smart00360 RRM RNA recognition 34.4 70 0.0015 23.9 4.0 37 352-388 8-47 (71)
200 KOG2412 Nuclear-export-signal 34.2 8.8E+02 0.019 29.0 14.6 130 482-629 156-287 (591)
201 PF09731 Mitofilin: Mitochondr 34.1 7.9E+02 0.017 28.4 21.4 35 517-551 307-341 (582)
202 PF00509 Hemagglutinin: Haemag 33.8 16 0.00034 42.5 0.4 96 455-568 364-459 (550)
203 PTZ00121 MAEBL; Provisional 33.3 1.4E+03 0.03 31.0 21.3 32 519-550 1206-1237(2084)
204 PF08703 PLC-beta_C: PLC-beta 32.8 5.6E+02 0.012 26.3 21.7 44 599-642 119-162 (185)
205 TIGR00570 cdk7 CDK-activating 32.5 5.9E+02 0.013 28.1 11.9 16 519-534 75-90 (309)
206 COG0419 SbcC ATPase involved i 32.3 1E+03 0.023 29.3 22.7 11 41-51 25-35 (908)
207 PRK04778 septation ring format 32.2 8.8E+02 0.019 28.4 20.1 19 620-638 509-527 (569)
208 PRK10884 SH3 domain-containing 31.7 3.1E+02 0.0067 28.3 9.2 96 432-538 78-174 (206)
209 PF10205 KLRAQ: Predicted coil 31.7 3.8E+02 0.0083 25.2 8.9 48 474-521 10-57 (102)
210 COG4942 Membrane-bound metallo 31.6 8.6E+02 0.019 28.1 21.8 38 473-510 42-79 (420)
211 PF05739 SNARE: SNARE domain; 31.5 2.7E+02 0.0059 22.3 8.8 42 473-514 15-56 (63)
212 COG0238 RpsR Ribosomal protein 31.3 39 0.00085 30.0 2.4 28 250-279 14-41 (75)
213 PF12004 DUF3498: Domain of un 31.3 16 0.00035 42.1 0.0 24 597-620 455-478 (495)
214 PF12297 EVC2_like: Ellis van 31.3 8.8E+02 0.019 28.1 18.6 30 451-483 109-138 (429)
215 PF10224 DUF2205: Predicted co 31.1 2.5E+02 0.0054 25.2 7.4 50 487-536 20-69 (80)
216 KOG4674 Uncharacterized conser 30.5 1.6E+03 0.034 30.8 20.9 26 477-502 1347-1372(1822)
217 PF00901 Orbi_VP5: Orbivirus o 30.4 9.7E+02 0.021 28.3 18.1 115 489-624 107-222 (508)
218 PF12171 zf-C2H2_jaz: Zinc-fin 30.0 24 0.00053 24.4 0.8 23 251-279 1-23 (27)
219 PF12777 MT: Microtubule-bindi 29.8 7.2E+02 0.016 27.1 12.2 38 466-503 5-42 (344)
220 PF11291 DUF3091: Protein of u 29.8 4.6E+02 0.01 24.5 9.1 51 527-580 5-55 (100)
221 KOG2894 Uncharacterized conser 29.8 3.3E+02 0.0073 29.9 9.3 34 602-635 73-109 (331)
222 PF03999 MAP65_ASE1: Microtubu 29.6 2.1E+02 0.0045 33.8 8.5 31 615-645 381-411 (619)
223 TIGR01649 hnRNP-L_PTB hnRNP-L/ 29.5 99 0.0021 34.9 5.8 69 328-406 389-462 (481)
224 PF15272 BBP1_C: Spindle pole 29.4 6.7E+02 0.014 26.1 16.3 62 470-534 13-75 (196)
225 cd07645 I-BAR_IMD_BAIAP2L1 Inv 29.3 7.2E+02 0.016 26.4 16.7 70 535-606 107-177 (226)
226 PLN03134 glycine-rich RNA-bind 29.2 1.2E+02 0.0026 29.0 5.6 56 333-398 36-94 (144)
227 PF04849 HAP1_N: HAP1 N-termin 29.2 8.2E+02 0.018 27.1 14.4 75 463-544 200-274 (306)
228 PRK13400 30S ribosomal protein 29.1 67 0.0014 31.8 3.7 27 251-278 22-48 (147)
229 KOG2150 CCR4-NOT transcription 28.8 8.3E+02 0.018 29.2 12.9 118 474-592 40-185 (575)
230 PF13949 ALIX_LYPXL_bnd: ALIX 28.7 6.8E+02 0.015 26.0 19.9 83 478-560 24-118 (296)
231 PRK00398 rpoP DNA-directed RNA 28.7 44 0.00096 26.0 2.1 11 250-260 20-30 (46)
232 KOG0994 Extracellular matrix g 28.5 1.5E+03 0.032 29.9 20.5 10 353-362 1351-1360(1758)
233 KOG1991 Nuclear transport rece 28.3 35 0.00075 42.3 2.1 13 228-240 962-974 (1010)
234 KOG0125 Ataxin 2-binding prote 28.3 88 0.0019 34.8 4.9 57 335-400 100-157 (376)
235 KOG3800 Predicted E3 ubiquitin 27.8 5.7E+02 0.012 28.2 10.6 40 587-627 131-171 (300)
236 KOG2072 Translation initiation 27.7 1.3E+03 0.029 29.1 18.5 148 487-640 667-824 (988)
237 KOG2817 Predicted E3 ubiquitin 27.5 27 0.00058 39.2 0.9 10 251-260 374-383 (394)
238 KOG1991 Nuclear transport rece 26.8 33 0.00071 42.5 1.5 7 270-276 979-985 (1010)
239 PHA00616 hypothetical protein 26.8 19 0.00041 28.9 -0.3 22 251-278 1-22 (44)
240 KOG0978 E3 ubiquitin ligase in 26.8 1.3E+03 0.027 28.5 16.1 139 449-590 482-640 (698)
241 PF14643 DUF4455: Domain of un 26.5 1E+03 0.022 27.3 19.7 156 476-641 208-389 (473)
242 PHA02047 phage lambda Rz1-like 26.4 2.5E+02 0.0054 26.3 6.7 48 463-513 31-78 (101)
243 PF15556 Zwint: ZW10 interacto 26.1 8.1E+02 0.018 26.0 14.3 89 429-524 34-132 (252)
244 PF12325 TMF_TATA_bd: TATA ele 26.0 5.9E+02 0.013 24.3 12.5 77 481-562 28-104 (120)
245 PF12761 End3: Actin cytoskele 25.9 5.1E+02 0.011 26.9 9.5 24 538-561 172-195 (195)
246 COG1422 Predicted membrane pro 25.8 1.7E+02 0.0036 30.5 6.1 11 552-562 96-106 (201)
247 cd07626 BAR_SNX9_like The Bin/ 25.8 7.5E+02 0.016 25.5 19.2 58 578-645 142-199 (199)
248 PF05010 TACC: Transforming ac 25.7 7.7E+02 0.017 25.6 20.9 149 458-643 51-199 (207)
249 KOG0681 Actin-related protein 25.6 6.2E+02 0.013 30.4 11.1 36 532-567 377-412 (645)
250 PF00901 Orbi_VP5: Orbivirus o 25.5 1.2E+03 0.025 27.7 14.8 41 593-634 170-210 (508)
251 PF07200 Mod_r: Modifier of ru 25.3 4E+02 0.0087 25.2 8.3 70 456-525 31-104 (150)
252 PRK12705 hypothetical protein; 25.2 1.2E+03 0.025 27.5 22.1 36 619-654 163-198 (508)
253 KOG2264 Exostosin EXT1L [Signa 25.1 3.3E+02 0.0071 32.7 8.8 67 584-650 81-156 (907)
254 PF09738 DUF2051: Double stran 25.0 2.4E+02 0.0051 30.9 7.4 27 481-507 110-136 (302)
255 PRK04778 septation ring format 24.9 1.2E+03 0.025 27.4 19.5 14 285-298 122-135 (569)
256 KOG0243 Kinesin-like protein [ 24.8 1.6E+03 0.034 28.9 19.0 162 452-643 415-581 (1041)
257 PF12072 DUF3552: Domain of un 24.3 7.5E+02 0.016 25.0 21.8 23 627-649 179-201 (201)
258 smart00531 TFIIE Transcription 24.3 40 0.00087 32.4 1.3 12 249-260 121-132 (147)
259 PRK10787 DNA-binding ATP-depen 24.2 4.5E+02 0.0098 32.2 10.3 51 512-562 203-257 (784)
260 CHL00077 rps18 ribosomal prote 24.2 99 0.0021 28.2 3.7 41 253-297 19-68 (86)
261 PF04111 APG6: Autophagy prote 24.1 9.6E+02 0.021 26.1 13.0 39 474-512 48-86 (314)
262 COG2433 Uncharacterized conser 24.0 1.2E+03 0.026 28.4 13.0 15 632-646 632-646 (652)
263 COG1422 Predicted membrane pro 24.0 4.3E+02 0.0092 27.6 8.6 35 477-511 59-93 (201)
264 TIGR00993 3a0901s04IAP86 chlor 24.0 50 0.0011 39.9 2.3 16 324-339 633-648 (763)
265 KOG4364 Chromatin assembly fac 23.9 1.4E+03 0.031 28.1 15.1 12 322-333 142-153 (811)
266 KOG3859 Septins (P-loop GTPase 23.9 9E+02 0.02 27.1 11.3 31 614-644 366-399 (406)
267 KOG4637 Adaptor for phosphoino 23.9 1.1E+03 0.025 27.0 15.9 21 391-411 81-101 (464)
268 TIGR03545 conserved hypothetic 23.7 8.9E+02 0.019 28.7 12.2 15 327-341 52-66 (555)
269 PF04880 NUDE_C: NUDE protein, 23.7 1.1E+02 0.0025 30.7 4.4 51 492-562 2-52 (166)
270 KOG0957 PHD finger protein [Ge 23.7 1.3E+03 0.028 27.6 13.4 21 533-553 342-362 (707)
271 PF12130 DUF3585: Protein of u 23.6 6.8E+02 0.015 24.3 15.7 121 482-614 8-128 (142)
272 PF04194 PDCD2_C: Programmed c 23.6 85 0.0018 30.8 3.5 40 222-261 52-107 (164)
273 KOG4657 Uncharacterized conser 23.5 8E+02 0.017 26.3 10.5 10 522-531 80-89 (246)
274 PF04050 Upf2: Up-frameshift s 23.5 27 0.00058 34.4 0.0 16 286-301 64-79 (170)
275 PRK12495 hypothetical protein; 23.4 66 0.0014 33.8 2.7 42 212-259 4-50 (226)
276 PF15397 DUF4618: Domain of un 23.4 9.6E+02 0.021 25.9 21.7 37 531-567 118-154 (258)
277 KOG4438 Centromere-associated 23.3 1.2E+03 0.026 27.1 22.2 154 475-645 215-371 (446)
278 KOG4809 Rab6 GTPase-interactin 23.3 1.4E+03 0.029 27.6 14.6 74 480-562 370-443 (654)
279 PRK14160 heat shock protein Gr 23.2 8.5E+02 0.018 25.5 10.7 46 474-519 52-97 (211)
280 KOG3241 Uncharacterized conser 23.2 48 0.001 34.0 1.7 7 1-7 1-7 (227)
281 KOG1824 TATA-binding protein-i 23.1 35 0.00076 42.4 0.8 13 267-279 394-406 (1233)
282 KOG0804 Cytoplasmic Zn-finger 22.9 6.6E+02 0.014 29.3 10.5 12 249-260 173-184 (493)
283 COG5533 UBP5 Ubiquitin C-termi 22.8 49 0.0011 36.6 1.8 27 230-263 270-296 (415)
284 KOG4593 Mitotic checkpoint pro 22.7 1.5E+03 0.032 27.9 17.1 151 471-625 456-629 (716)
285 PF01540 Lipoprotein_7: Adhesi 22.6 6.1E+02 0.013 27.9 9.7 75 455-532 199-280 (353)
286 smart00451 ZnF_U1 U1-like zinc 22.6 54 0.0012 23.3 1.5 25 250-280 2-26 (35)
287 PF05149 Flagellar_rod: Parafl 22.5 1E+03 0.023 26.0 13.5 24 478-501 22-45 (289)
288 KOG2023 Nuclear transport rece 22.4 45 0.00097 40.2 1.5 10 550-559 803-812 (885)
289 COG0724 RNA-binding proteins ( 22.3 2E+02 0.0043 27.2 5.6 61 331-400 115-178 (306)
290 TIGR03655 anti_R_Lar restricti 22.3 38 0.00082 27.3 0.6 10 253-262 3-12 (53)
291 TIGR01628 PABP-1234 polyadenyl 22.1 1.3E+02 0.0029 34.2 5.1 50 333-391 90-141 (562)
292 KOG2652 RNA polymerase II tran 21.9 42 0.00091 37.2 1.1 8 249-256 318-325 (348)
293 PF15254 CCDC14: Coiled-coil d 21.9 1.6E+03 0.035 28.0 17.3 37 502-541 435-471 (861)
294 PF06631 DUF1154: Protein of u 21.7 2E+02 0.0043 23.6 4.5 42 572-621 6-47 (47)
295 KOG4572 Predicted DNA-binding 21.7 1.7E+03 0.038 28.3 17.2 79 492-570 864-951 (1424)
296 KOG2010 Double stranded RNA bi 21.6 3.8E+02 0.0083 30.1 8.1 65 452-526 144-208 (405)
297 PF04147 Nop14: Nop14-like fam 21.6 53 0.0012 40.1 2.0 16 497-512 697-712 (840)
298 KOG1924 RhoA GTPase effector D 21.6 8.5E+02 0.018 30.6 11.4 36 524-562 338-373 (1102)
299 KOG0533 RRM motif-containing p 21.5 1.5E+02 0.0032 31.6 4.9 64 334-407 86-151 (243)
300 PF10234 Cluap1: Clusterin-ass 21.4 1.1E+03 0.023 25.7 14.4 78 427-511 133-211 (267)
301 PF06632 XRCC4: DNA double-str 21.4 1.2E+03 0.025 26.1 11.9 61 477-547 131-191 (342)
302 PF13256 DUF4047: Domain of un 21.4 5E+02 0.011 25.3 7.8 32 491-528 58-89 (125)
303 PF00170 bZIP_1: bZIP transcri 21.2 4.1E+02 0.0088 21.9 6.5 29 486-514 22-50 (64)
304 KOG3241 Uncharacterized conser 21.1 57 0.0012 33.5 1.7 9 212-220 215-223 (227)
305 COG5189 SFP1 Putative transcri 21.0 37 0.00081 37.5 0.5 23 248-276 395-417 (423)
306 PF10146 zf-C4H2: Zinc finger- 20.9 9.9E+02 0.021 25.2 13.1 35 527-562 52-86 (230)
307 KOG0980 Actin-binding protein 20.9 1.8E+03 0.039 28.1 23.9 14 228-241 163-176 (980)
308 KOG1999 RNA polymerase II tran 20.7 75 0.0016 39.5 2.9 19 366-384 197-215 (1024)
309 PF12253 CAF1A: Chromatin asse 20.6 1.2E+02 0.0026 27.0 3.4 10 145-154 11-20 (77)
310 TIGR01645 half-pint poly-U bin 20.4 1.7E+02 0.0037 34.9 5.6 62 333-404 206-270 (612)
311 COG0466 Lon ATP-dependent Lon 20.1 9E+02 0.02 30.0 11.3 101 461-562 151-258 (782)
312 PF00301 Rubredoxin: Rubredoxi 20.0 36 0.00078 27.5 0.1 13 249-261 32-44 (47)
No 1
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=1.5e-44 Score=329.37 Aligned_cols=115 Identities=39% Similarity=0.763 Sum_probs=86.9
Q ss_pred CCCeeecCCeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHH
Q 006189 324 KDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHF 403 (657)
Q Consensus 324 kDeliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLekhF 403 (657)
+|++|||||||||+||+|+++++|+++|+|+++|+++|+.|+|++|+||||+.||+|++||+|++||+||+||++||+||
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCc
Q 006189 404 AEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQ 445 (657)
Q Consensus 404 e~qg~GRkdW~~~~r~~~~~pG~~~~LYGWlAradDyd~~d~ 445 (657)
+.++|||+||. +++. .+++||||||++|||++.|+
T Consensus 81 ~~~~~Gr~dW~--~~~~-----~~~~lYGw~A~~dD~~~~~~ 115 (116)
T PF03468_consen 81 EAQGHGRKDWE--RRRG-----GGSQLYGWVARADDYNSPGP 115 (116)
T ss_dssp HHTT-SHHHHT---SSS--------S-EEEE-BHHHHHSSSH
T ss_pred HHcCCCHHHHh--hccC-----CCCceeeeeCchhhccCCCC
Confidence 99999999998 4443 48999999999999999876
No 2
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.38 E-value=1.1e-13 Score=107.00 Aligned_cols=36 Identities=42% Similarity=0.775 Sum_probs=34.2
Q ss_pred ccCCCCCCCccccccCchhhhhhccccC-------chhhhhHHHHH
Q 006189 254 CPACQGGPGAIDWYRGLQPLMTHAKTKG-------SKRVKLHRELA 292 (657)
Q Consensus 254 CP~C~gkkk~~D~Y~dl~~LLqHA~gvG-------ak~ka~HrALa 292 (657)
||||+++|++ | |+ |++|||||+||| ++++++|||||
T Consensus 1 CP~C~~kkk~-~-Y~-~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQ-D-YK-YRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCc-c-ee-hhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999988 8 99 999999999999 79999999996
No 3
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.11 Score=59.54 Aligned_cols=154 Identities=20% Similarity=0.344 Sum_probs=101.4
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHH
Q 006189 462 EMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS------EKLRETMEENRIVKQRTKMQHEQNKEEMDFQE 535 (657)
Q Consensus 462 Eiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s------~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~ 535 (657)
++..+-.. +-.++...++++|+..+....+|++++++.. ++|++.- ..++.=....++|-. .|+-..
T Consensus 217 ~~~~Elk~---~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~---~~L~~D~nK~~~y~~-~~~~k~ 289 (581)
T KOG0995|consen 217 ELEDELKH---RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKK---ARLQDDVNKFQAYVS-QMKSKK 289 (581)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH---HHHHhHHHHHHHHHH-HHHhhh
Confidence 44445555 5667777888888888888888888888432 2222211 112223344555533 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHH
Q 006189 536 QLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQD---KEMEEFVAARDRLIKFH 612 (657)
Q Consensus 536 ~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~---ke~e~f~ae~~kL~~~h 612 (657)
..+.....-+.+..++||+..|+||++ +.++.+-|+.|. .++++...||.+|-+.-
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~---------------------~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l 348 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKE---------------------NDELKKQIELQGISGEDVERMNLERNKLKREL 348 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 567777788889999999999999986 222223333221 34555558888887665
Q ss_pred hH---hHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 006189 613 GE---KMDAMRRRHWEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 613 ~~---k~~~lkkr~~e~~~~leke~~~~l~~lm~ 643 (657)
.+ .+..|.+..|+..++.+-.|++-++.|.+
T Consensus 349 ~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 349 NKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55 78899999999999999988887776654
No 4
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.50 E-value=1.7 Score=49.38 Aligned_cols=154 Identities=12% Similarity=0.169 Sum_probs=96.4
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HH-hHHHHHHhHHHHHHhHHHHHHHHHHH-
Q 006189 464 VVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM---EE-NRIVKQRTKMQHEQNKEEMDFQEQLF- 538 (657)
Q Consensus 464 v~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m---EE-n~i~r~k~kl~~~~neE~~kmQ~~a~- 538 (657)
++|--+ --++++.-+.++|+.++..+..|++++.+. ++|.... +| -+-+..-..+.++| +..|-++.+
T Consensus 255 e~Elk~---~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~---~~~mk~K~~~ 327 (622)
T COG5185 255 EQELKL---GFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENY---VNAMKQKSQE 327 (622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHh
Confidence 444444 466778888888888888888888888753 3332222 22 11111112223333 333333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 006189 539 -KDQIRIIHEARDEKEENFEKLQQQ---EREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGE 614 (657)
Q Consensus 539 -~~~~rIi~e~~~~kE~~FEkLqq~---erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~ 614 (657)
-..+.-+......||+..+-|+.. -|..+..+.+++ . +.|..++||++|-++-+.
T Consensus 328 ~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~------------------e---~fe~mn~Ere~L~reL~~ 386 (622)
T COG5185 328 WPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST------------------E---QFELMNQEREKLTRELDK 386 (622)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCH------------------H---HHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999965 455566666665 1 233344888888877766
Q ss_pred ---hHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhc
Q 006189 615 ---KMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 646 (657)
Q Consensus 615 ---k~~~lkkr~~e~~~~leke~~~~l~~lm~k~~ 646 (657)
++..|.|..-+-+++.+--|+ .|..++.+|+
T Consensus 387 i~~~~~~L~k~V~~~~leaq~~~~-slek~~~~~~ 420 (622)
T COG5185 387 INIQSDKLTKSVKSRKLEAQGIFK-SLEKTLRQYD 420 (622)
T ss_pred hcchHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence 778888888888887665554 4666666664
No 5
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=95.45 E-value=1.6 Score=44.41 Aligned_cols=127 Identities=22% Similarity=0.366 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEE 554 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~ 554 (657)
.-.|.||+.+-..+.+....|...|-.....+. ++|++|.-.|...+..+|..+. .++.
T Consensus 3 ~~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~---------~~r~~l~s~y~~q~~~Lq~qLl------------q~~k 61 (206)
T PF14988_consen 3 KEFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQ---------RERQELVSRYAKQTSELQDQLL------------QKEK 61 (206)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH------------HHHH
Confidence 347889998888888888888777766433332 3488888888877777766554 4566
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhh
Q 006189 555 NFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF 634 (657)
Q Consensus 555 ~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~ 634 (657)
.+..|+++-. -...|++--.-|..++..+..+..+.-.+|..++..|+-++.++..-||+++
T Consensus 62 ~~~~l~~eLq------------------~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 62 EQAKLQQELQ------------------ALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHH------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777621 1344555566788899999999999999999999999999999999999999
Q ss_pred -HHHHHH
Q 006189 635 -DAELTQ 640 (657)
Q Consensus 635 -~~~l~~ 640 (657)
+-.+..
T Consensus 124 ~e~~i~~ 130 (206)
T PF14988_consen 124 SELKILQ 130 (206)
T ss_pred HHhhHHH
Confidence 555543
No 6
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.37 E-value=0.72 Score=52.09 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhch---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHH
Q 006189 460 YHEMVVNQIRQMS---EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQ 536 (657)
Q Consensus 460 isEiv~E~~Rqm~---k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~ 536 (657)
|.++..+--|.|= ..++.|.+|...++..++||++-.....-+.+.|.++-.. =..|+..|--| ||++
T Consensus 371 iEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~n------yv~LQEry~~e---iQqK 441 (527)
T PF15066_consen 371 IEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKAN------YVHLQERYMTE---IQQK 441 (527)
T ss_pred HHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh------HHHHHHHHHHH---HHHh
Confidence 4444444444332 2567788888888888899888887777777788877776 44577777444 5554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHhhh
Q 006189 537 LFKD-QIRIIHEARDEKEENFEKLQQQ--EREKVKQS 570 (657)
Q Consensus 537 a~~~-~~rIi~e~~~~kE~~FEkLqq~--erek~~~~ 570 (657)
-.-- +---+....-.||+..|+|||- +.|++..+
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~S 478 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTS 478 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2234555666899999999996 44555433
No 7
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.22 E-value=2 Score=52.01 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 596 KEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 596 ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
.-+.+||+||.+|.+.+.++..+|.++|.+-.-+|+++-.+-..+++.+|
T Consensus 1128 s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~ 1177 (1189)
T KOG1265|consen 1128 SNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEY 1177 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45788999999999999999999999988877777666444444555444
No 8
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=3.7 Score=49.22 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhcCCcc
Q 006189 598 MEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHIT 650 (657)
Q Consensus 598 ~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~~~~~~ 650 (657)
++-|-....+|...|-....+...-|- -+.++.++.+.....||.+.+....
T Consensus 565 idi~n~qlkelk~~~~~q~lake~~yk-~e~d~~ke~et~~lel~~~ke~e~~ 616 (1118)
T KOG1029|consen 565 IDIFNNQLKELKEDVNSQQLAKEELYK-NERDKLKEAETKALELIGEKEAESA 616 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 444444455555555555444443332 2233344444555556655554443
No 9
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.60 E-value=5.1 Score=40.60 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEK 552 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~k 552 (657)
++-..+.+++.++....+++..|+..+..+.+++.++-.| |+.|...|+.-+...|+.+-- -.-++.....+-
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E------rdeL~~kf~~~i~evqQk~~~-kn~lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE------RDELYRKFESAIQEVQQKTGL-KNLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4667788888899999999999999999999999999999 999999999988888887532 334555555566
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhhH
Q 006189 553 EENFEKLQQQEREKVKQSIANPKNTEDYK 581 (657)
Q Consensus 553 E~~FEkLqq~erek~~~~n~~~~~~e~~~ 581 (657)
.+.+|+-.++-.+-+..+|.+|.....-.
T Consensus 156 ~~~lE~keaqL~evl~~~nldp~~~~~v~ 184 (201)
T PF13851_consen 156 SEQLEKKEAQLNEVLAAANLDPAALSQVS 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666666665556667788886555443
No 10
>PRK11637 AmiB activator; Provisional
Probab=91.68 E-value=25 Score=38.99 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006189 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (657)
Q Consensus 476 qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m 510 (657)
..+..|..+|...++.+..++..+..+...|..+-
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.65 E-value=25 Score=44.34 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHH
Q 006189 599 EEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 599 e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~ 639 (657)
...+++.+..|......+++.+.++.+..-+|+++++.+|.
T Consensus 724 ~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~ 764 (1201)
T PF12128_consen 724 QELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA 764 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777788888888888888888888888888888875
No 12
>PRK11637 AmiB activator; Provisional
Probab=91.53 E-value=26 Score=38.87 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIV 502 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~ 502 (657)
-+..|..+..+|...++.+++++..+..+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l 108 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDEL 108 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 13
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.55 E-value=22 Score=36.19 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=96.2
Q ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhH-HHHHHhHHHHHHhHHHHHHHHHHHHHHH--
Q 006189 469 RQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIV---SEKLRETMEENR-IVKQRTKMQHEQNKEEMDFQEQLFKDQI-- 542 (657)
Q Consensus 469 Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~---s~sL~r~mEEn~-i~r~k~kl~~~~neE~~kmQ~~a~~~~~-- 542 (657)
|.||.....+..|.|+|...+..+++|.--+-.+ .....+++.... ---.=-++++.+++|++-++...++.+.
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777788888888888777776554432 222122221000 0001346789999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 006189 543 RIIHEARDEKEENFEKLQQQEREKVKQS--IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMR 620 (657)
Q Consensus 543 rIi~e~~~~kE~~FEkLqq~erek~~~~--n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lk 620 (657)
+........++....+++.+ -..+.+. +.+....++--.+.+.+..-+...++.+..++-..+-.-+.+....+.-+
T Consensus 85 r~~~~klk~~~~el~k~~~~-l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~ 163 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDE-LKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEK 163 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555566667777777665 3334444 33555566666677777777777777777666655555555555555555
Q ss_pred HHhHHHHH
Q 006189 621 RRHWEEEV 628 (657)
Q Consensus 621 kr~~e~~~ 628 (657)
+++.+...
T Consensus 164 kK~~~~~~ 171 (194)
T PF15619_consen 164 KKHKEAQE 171 (194)
T ss_pred HHHHHHHH
Confidence 55544433
No 14
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.95 E-value=24 Score=35.83 Aligned_cols=63 Identities=16% Similarity=0.305 Sum_probs=32.4
Q ss_pred hhcccccc-HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Q 006189 452 KQKFEMRS-YHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENR 514 (657)
Q Consensus 452 rkkgdLKS-isEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~ 514 (657)
+.-.+||. |+||..+.+.-+..--..|+-++.+.+...+.+.++...+..+++-|..+.+|+.
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~ 72 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVE 72 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44455555 4788887777322333333333333333444445555555555566666666633
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.10 E-value=74 Score=40.27 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=54.1
Q ss_pred HhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH-----HHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 006189 468 IRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRI-----VKQRTKMQHEQNKEEMDFQEQLFKDQI 542 (657)
Q Consensus 468 ~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i-----~r~k~kl~~~~neE~~kmQ~~a~~~~~ 542 (657)
+.++......+..+.++++..+.++..|.+++...+.+.......... ...+...+.+..++..+.++.+.....
T Consensus 344 i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 423 (1201)
T PF12128_consen 344 IEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQ 423 (1201)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335666677778888888888888888877777666655544111 111222233334444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006189 543 RIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 543 rIi~e~~~~kE~~FEkLqq~ 562 (657)
.+..+.+.+.+...+.++++
T Consensus 424 ~l~~~~~~~~~~~~~~~~~~ 443 (1201)
T PF12128_consen 424 ALEQELRQQSQEQLEELQEQ 443 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555544
No 16
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.02 E-value=21 Score=43.22 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKL 506 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL 506 (657)
+-....|...++..|-.+++|..++..+...+
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 33444555566667777777776666444333
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.67 E-value=76 Score=39.84 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=24.7
Q ss_pred cCceeecCCCCeeeccCCCCCCCccccccCchhhhhhccc-cCchhhhhHHHHHHHHHH
Q 006189 240 LTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKT-KGSKRVKLHRELAELLDE 297 (657)
Q Consensus 240 g~~~~kn~~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~g-vGak~ka~HrALa~lLe~ 297 (657)
|.+.-+.- ..|-|-.-- .|+ |. +=++-=.| -|+-.-|.--|||.-||-
T Consensus 40 G~I~sI~L--~NFMCHsnL----~Ie-Fg---~~vNfI~G~NGSGKSAIltAl~lglG~ 88 (1074)
T KOG0250|consen 40 GKIESIHL--TNFMCHSNL----LIE-FG---PRVNFIVGNNGSGKSAILTALTLGLGG 88 (1074)
T ss_pred ceEEEEEE--eeecccccc----eec-cC---CCceEeecCCCCcHHHHHHHHHHhhcc
Confidence 77765544 567775432 234 22 22332222 145555666677777763
No 18
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.05 E-value=36 Score=41.99 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=35.9
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 006189 587 IAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQL 641 (657)
Q Consensus 587 ~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~l 641 (657)
|+.|+..-..-.+.+.-+.++|.+.|.+-..+|.+..-..+.|++.+.++.+..|
T Consensus 1130 i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~~~~~~ 1184 (1189)
T KOG1265|consen 1130 IKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEEQMARL 1184 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5556655444455566667778888888777777665555666666666666544
No 19
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.96 E-value=49 Score=39.81 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHH------
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFS--------IVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLF------ 538 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~--------e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~------ 538 (657)
|.-+.|.-|.+.|++...+|..+|...- ..++-+.+.-++--|--.|+..|+.-..=++|+|-..+
T Consensus 350 K~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr 429 (961)
T KOG4673|consen 350 KTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALR 429 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5556677777888777777766554432 22333333333222223344444444444555554322
Q ss_pred -------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 006189 539 -------KD-QIRIIHEARDEKEENFEKLQQQEREKV-KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 609 (657)
Q Consensus 539 -------~~-~~rIi~e~~~~kE~~FEkLqq~erek~-~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~ 609 (657)
+. +-+|..+...+|.+.+.-|+.+ =+++ +++ +-.+-|-|-++-++|+.+.+++..-++|
T Consensus 430 ~e~kslk~ela~~l~~DeLaEkdE~I~~lm~E-GEkLSK~q-----------l~qs~iIkKLRAk~ke~etl~~K~ge~i 497 (961)
T KOG4673|consen 430 REQKSLKKELAAALLKDELAEKDEIINQLMAE-GEKLSKKQ-----------LAQSAIIKKLRAKIKEAETLEEKKGELI 497 (961)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHhHHHH-----------HHHHHHHHHHHHHhhhhhHHHHHhhhHH
Confidence 11 2245555666666666666654 2222 111 1122333444445555555555555555
Q ss_pred HHHhHhH
Q 006189 610 KFHGEKM 616 (657)
Q Consensus 610 ~~h~~k~ 616 (657)
..-+...
T Consensus 498 ~~L~sE~ 504 (961)
T KOG4673|consen 498 TKLQSEE 504 (961)
T ss_pred HHHHHHH
Confidence 4444433
No 20
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=85.90 E-value=67 Score=36.26 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=35.2
Q ss_pred CCCCcccccChHHHHHHhh---ccCc-ceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhc
Q 006189 344 DENDKWTGMGNQELLEYFI---LYAA-VRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQ 406 (657)
Q Consensus 344 dddgr~~G~s~~eL~d~ls---gF~p-~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLekhFe~q 406 (657)
..||-++.-.+..|...+. .|++ .|..-++-.+|+.||. +---|...++|-+||...
T Consensus 42 ~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~------d~ltf~SVVelIn~yr~~ 102 (464)
T KOG4637|consen 42 QPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFS------DPLTFNSVVELINHYRNE 102 (464)
T ss_pred CCCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCC------CchhhHHHHHHHHHHhhh
Confidence 3456665555544444333 4444 4555566688888864 555678889999998743
No 21
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.89 E-value=51 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=14.2
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHH
Q 006189 622 RHWEEEVELEKGFDAELTQLMEK 644 (657)
Q Consensus 622 r~~e~~~~leke~~~~l~~lm~k 644 (657)
.+-.++.+|..+++.+|....+.
T Consensus 160 ~~~~~~~~L~~~l~~ell~~yer 182 (239)
T COG1579 160 ELSSKREELKEKLDPELLSEYER 182 (239)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Confidence 45556666667777776665543
No 22
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.28 E-value=83 Score=37.94 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 532 DFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 532 kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
.-|-.+++.-...++...+.|...++.|||+
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqe 616 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQE 616 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445555555666677778899999999987
No 23
>PRK12704 phosphodiesterase; Provisional
Probab=85.22 E-value=80 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHhhhhhHHHHHHHHHHhcCCcccccc
Q 006189 628 VELEKGFDAELTQLMEKYSTHITEVAA 654 (657)
Q Consensus 628 ~~leke~~~~l~~lm~k~~~~~~~~~~ 654 (657)
.+-+++...=|..-|..|..+.+.+..
T Consensus 184 ~~a~~~a~~i~~~a~qr~a~~~~~e~~ 210 (520)
T PRK12704 184 EEADKKAKEILAQAIQRCAADHVAETT 210 (520)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhc
Confidence 344566666689999999988776543
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.05 E-value=1e+02 Score=37.65 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred cCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhH---HHHHHhhhhhHHHHHHHHH
Q 006189 571 IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHW---EEEVELEKGFDAELTQLME 643 (657)
Q Consensus 571 n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~---e~~~~leke~~~~l~~lm~ 643 (657)
..+..+++. -...|-+.+..-.+-.+.+...|....++..+....+++.+- .+--.|++++.+.-++|+.
T Consensus 425 ~~d~~~~~~---~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 425 QADSSNEDE---ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLED 497 (775)
T ss_pred cccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444443 335566666655566666666666666555555544444332 2333455666655555553
No 25
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=84.90 E-value=48 Score=33.78 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 598 MEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 598 ~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
+++||.++..|...++++...|..+|-+-.-+|+.+-......|+..|
T Consensus 107 I~e~V~~ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~ey 154 (185)
T PF08703_consen 107 IQEVVQEIKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEY 154 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666666666655555544444444444443
No 26
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=83.36 E-value=47 Score=32.47 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHh
Q 006189 581 KLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVEL 630 (657)
Q Consensus 581 ~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~l 630 (657)
..|..+-..|+..|. ..+.++=.+|.+++..|+-.|-+++..|
T Consensus 103 ~~~~~~we~f~~e~~-------~~~~~vdee~~~~~~~l~e~Y~~~~~~l 145 (145)
T PF14942_consen 103 EQRKQEWEEFMKEQQ-------QKKQRVDEEFREKEERLKEQYSEMEKKL 145 (145)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 346666777776555 5666677899999999999998877654
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.93 E-value=1.6e+02 Score=37.60 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHH---hHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 585 EEIAKFITVQDKEMEEFVAARDRLIKFH---GEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 585 e~~~kf~~~Q~ke~e~f~ae~~kL~~~h---~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
..+|+-+..-.++.+..+.|.+-|++.- +++++.+.++|.|- .++-+|++.+++.|...|
T Consensus 938 ~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~-~~~~~E~k~~~~~~k~~~ 1000 (1293)
T KOG0996|consen 938 AKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEA-EESLKEIKKELRDLKSEL 1000 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 23555555555443 333455555555554443
No 28
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=81.61 E-value=4.8 Score=37.14 Aligned_cols=69 Identities=7% Similarity=0.096 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 459 SisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
|..++...-+.+.+...+.-..+...+..=+-.+.++=....+.+.+|+-+++= |+|+..+| +|||+||
T Consensus 33 sF~~~L~~al~~vn~~q~~a~~~~~~~~~G~~~l~~vmiA~~kA~lslq~~vqV------RNKlveAY-qEIMrMq 101 (102)
T PRK00732 33 SFGALLKDAMGSVLEAGRKSDAQTAAMASGKANLMDVVTAVAETDVAVSTLVSV------RDRVIQAY-EEIMRMP 101 (102)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHhCC
Confidence 666666666664444444334444433332224555555666777888888887 99999999 7799887
No 29
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=81.08 E-value=4.3 Score=31.85 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=39.1
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCccchHHHHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
+.|-|+|. ..+..+|++.|+.|+++ .+....+..| +.|+++|.|.+ ...-..|+.
T Consensus 1 l~v~nlp~---------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP---------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT---------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC---------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35667754 24678999999999998 4555554444 59999999987 555555554
No 30
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=81.05 E-value=5.9 Score=31.80 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=42.1
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCccchHHHHHHHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAGGYLEAERLHK 401 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~rLek 401 (657)
+.|-|+|.. .+...|.+.|+.|+++ +++...++.|. +|+|+|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~~---------~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPS---------TTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT-----------HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 357777652 3578899999998765 67888887765 899999996 5666667766654
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.96 E-value=72 Score=38.37 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=41.5
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
|++.||.+--.++.|-..|++.-..---.|+..|...++..+.|+.++..+....+.-++-
T Consensus 429 kLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 429 KLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred HHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776665433222223567778888888888888888887777665554
No 32
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.70 E-value=34 Score=41.37 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 523 QHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 523 ~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
...+.++..++.+.+++...+++.+.+.+=++.+.+|++.
T Consensus 557 ~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 557 KEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677777788888888888888888888888754
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.67 E-value=1.3e+02 Score=35.53 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 006189 481 LKNRVVKEQRHSKALEATFS 500 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~ 500 (657)
|.+++++.++...+|.....
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~ 160 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENE 160 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 34
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.59 E-value=1.2e+02 Score=35.20 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHhhhhhHHHHHHHHHHhcCCcccccc
Q 006189 628 VELEKGFDAELTQLMEKYSTHITEVAA 654 (657)
Q Consensus 628 ~~leke~~~~l~~lm~k~~~~~~~~~~ 654 (657)
.+-+++...=|..-|..|..+.+.+..
T Consensus 178 ~~a~~~a~~i~~~aiqr~a~~~~~e~~ 204 (514)
T TIGR03319 178 EEADKKAKEILATAIQRYAGDHVAETT 204 (514)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 344555566689999999988776543
No 35
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=79.93 E-value=69 Score=39.15 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=6.9
Q ss_pred HhhcCCChhhhh
Q 006189 403 FAEQGTDRDSWN 414 (657)
Q Consensus 403 Fe~qg~GRkdW~ 414 (657)
|.+-|..-+|++
T Consensus 738 F~aLgL~q~Dfk 749 (1259)
T KOG0163|consen 738 FQALGLDQNDFK 749 (1259)
T ss_pred HHHhCCCccccc
Confidence 555566666654
No 36
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=79.73 E-value=12 Score=36.01 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=67.1
Q ss_pred ceeeeeeccccccCCCCccccccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHH--HHHHHHHHHHHhhhhHH
Q 006189 428 RQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVK--EQRHSKALEATFSIVSE 504 (657)
Q Consensus 428 ~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~--knk~lqeLE~k~~e~s~ 504 (657)
+.=||++ |.||-.. ++ +-.. .....-.|..++....+...+...+.-..+..++.. ..-.|-++=....+.+.
T Consensus 29 ~~~~~~~-~~~~~~~-~~--~~~~~~~~~~~~sF~d~Lk~Al~~VN~~Q~~Ad~~~~~~~~G~~~vdLhdVMIA~qKAsl 104 (127)
T PRK12729 29 GDKVGVF-RTEDRHY-KD--VKQPVSPDYVAESFSEAMKNALTSVNDLQVEADELTQKMVFDPNSVDAHDVMIASEKARV 104 (127)
T ss_pred CCcccee-ecCcccc-cc--cccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3567887 5555443 22 2223 444566899999999999776666666667666666 25567777777778889
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHhHHHHHH
Q 006189 505 KLRETMEENRIVKQRTKMQHEQNKEEMDF 533 (657)
Q Consensus 505 sL~r~mEEn~i~r~k~kl~~~~neE~~km 533 (657)
+|+-+|+= |.|+..+| +|||.+
T Consensus 105 Slql~vQV------RNKvVeAY-qEIM~~ 126 (127)
T PRK12729 105 ALTFTKTI------ADGVVRAY-RELTSL 126 (127)
T ss_pred HHHHHHHH------HHHHHHHH-HHHHhc
Confidence 99999987 99999999 566654
No 37
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=79.46 E-value=1.3e+02 Score=34.80 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=4.5
Q ss_pred HHHHHHHHHhhh
Q 006189 490 RHSKALEATFSI 501 (657)
Q Consensus 490 k~lqeLE~k~~e 501 (657)
..+..|..++.+
T Consensus 258 ~~i~~L~~~l~~ 269 (582)
T PF09731_consen 258 ERIDALQKELAE 269 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 38
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.41 E-value=1.4e+02 Score=35.48 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
..+.+..|..+|......+.+++..+.....++..+.++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554444
No 39
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=1.3 Score=49.38 Aligned_cols=11 Identities=18% Similarity=-0.067 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 006189 84 GHLDSTQKPGM 94 (657)
Q Consensus 84 ~~~~~~~~~~~ 94 (657)
-..++.++.+|
T Consensus 169 ~~~d~~~~dvl 179 (514)
T KOG3130|consen 169 IANDVKSKDVL 179 (514)
T ss_pred hhcchhhhhcc
Confidence 34455555554
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.94 E-value=1.4e+02 Score=35.11 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
+..|...+....+....|+..+..++.+...+.+|
T Consensus 173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E 207 (546)
T PF07888_consen 173 VERLEAELEQEEEEMEQLKQQQKELTESSEELKEE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444
No 41
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=78.60 E-value=50 Score=39.58 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHhcCCc
Q 006189 633 GFDAELTQLMEKYSTHI 649 (657)
Q Consensus 633 e~~~~l~~lm~k~~~~~ 649 (657)
.-.++.+++..|-.+-.
T Consensus 370 r~~aei~Kffqk~~~k~ 386 (811)
T KOG4364|consen 370 RHEAEIGKFFQKIDNKF 386 (811)
T ss_pred HHHHHHHhhhccccccc
Confidence 34566777777665544
No 42
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=78.57 E-value=7.7 Score=34.84 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=53.3
Q ss_pred hccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHH
Q 006189 453 QKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQ-RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEM 531 (657)
Q Consensus 453 kkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~kn-k~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~ 531 (657)
....-.+..++....+...+...+.-..+...+..-. ..+-++=....+...+|+-+++= |+|+..+| +|||
T Consensus 20 ~~~~~~~F~~~l~~al~~vn~~q~~a~~~~~~~~~G~~~dl~~vmia~~kA~lslq~~vqV------RnK~v~AY-qEIm 92 (96)
T PF02049_consen 20 SSAGGASFSDVLKNALDEVNQTQQQADQMAQAFATGESVDLHEVMIAMQKASLSLQLAVQV------RNKAVEAY-QEIM 92 (96)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHH
Confidence 3455567777777777755555555555555555444 55666666666778888888888 99999999 7788
Q ss_pred HHH
Q 006189 532 DFQ 534 (657)
Q Consensus 532 kmQ 534 (657)
+||
T Consensus 93 rMq 95 (96)
T PF02049_consen 93 RMQ 95 (96)
T ss_pred hCC
Confidence 887
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.31 E-value=1.5e+02 Score=37.36 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHh
Q 006189 286 KLHRELAELLDEE 298 (657)
Q Consensus 286 a~HrALa~lLe~d 298 (657)
..+.||...|+..
T Consensus 530 ~y~~Aie~alG~~ 542 (1163)
T COG1196 530 KYETALEAALGNR 542 (1163)
T ss_pred HHHHHHHHHcccc
Confidence 4444444444433
No 44
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.18 E-value=37 Score=36.84 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 006189 537 LFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGE 614 (657)
Q Consensus 537 a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~ 614 (657)
++.+++..|.+...+.|+.|-.|+.+-++|.+++. |-...-.-+..+..+..+=..+|+.||++|.-
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elE-----------r~K~~~d~L~~e~~~Lre~L~~rdeli~khGl 175 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIRELE-----------RQKRAHDSLREELDELREQLKQRDELIEKHGL 175 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCe
Confidence 46677888888888888888888888776655331 22222222333334445455788889988863
No 45
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.61 E-value=19 Score=36.58 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=83.5
Q ss_pred eeccccccCCCCccccccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006189 433 FMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKN--RVVKEQRHSKALEATFSIVSEKLRET 509 (657)
Q Consensus 433 WlAradDyd~~d~~siGe~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~n--qIe~knk~lqeLE~k~~e~s~sL~r~ 509 (657)
|+|+.|-++..+. -+- .+.+++--+.+-+++-..-.+-..-.+-.|.. .++..++..++|...+...+++|...
T Consensus 66 Y~a~QDqF~~~~~---eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 66 YFADQDQFDMVSD---EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred EeecHHhhcCCCh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6898888776555 223 77777777777777766655555555555544 57788888889988888888888776
Q ss_pred HHHhHHHHHHhH-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 510 MEENRIVKQRTK-----MQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKL 559 (657)
Q Consensus 510 mEEn~i~r~k~k-----l~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkL 559 (657)
-+=..-|+..++ +-+.|..+=+|..+.|++-.-.++..--..|-++||+|
T Consensus 143 k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~eel 197 (201)
T KOG4603|consen 143 KAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYEEL 197 (201)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHh
Confidence 655555555544 33556666677777666555566666666677777765
No 46
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.48 E-value=1.7 Score=54.02 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=8.1
Q ss_pred eEEEecccCCCCCC
Q 006189 55 EVYVRKSKNKAGSG 68 (657)
Q Consensus 55 ~~~~~k~k~~~~~~ 68 (657)
..|-|+||+-...+
T Consensus 1627 sevlkrskkeerai 1640 (3015)
T KOG0943|consen 1627 SEVLKRSKKEERAI 1640 (3015)
T ss_pred HHHHhhhhhhhccc
Confidence 34457777665555
No 47
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=66 Score=37.12 Aligned_cols=115 Identities=21% Similarity=0.214 Sum_probs=52.6
Q ss_pred HHHHHhHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhh
Q 006189 515 IVKQRTKMQHE-QNKEEMDFQEQLFKDQIRIIHEARDEK-EENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFIT 592 (657)
Q Consensus 515 i~r~k~kl~~~-~neE~~kmQ~~a~~~~~rIi~e~~~~k-E~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~ 592 (657)
+|-.++.+.+. -.++.|++|-.-++.+. +.+..+ |..=+.|.++.--....+.-+....++...-.|.+-+++|
T Consensus 223 ~l~~k~~E~~r~kqe~~Rk~~~~~r~e~~----e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vC 298 (508)
T KOG0717|consen 223 MLELKDAEAYRSKQEESRKQQLRKRREYA----ETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVC 298 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeec
Confidence 33345555444 33456777776666653 333333 2222222222111111122233333334334555777777
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q 006189 593 -------VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLM 642 (657)
Q Consensus 593 -------~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm 642 (657)
-|.|--| --+.|.+.++.|++. |||+-+=+...+++++.|.
T Consensus 299 nKsFKseKq~kNHE--------nSKKHkenv~eLrqe-mEEEe~d~~~~qaee~e~e 346 (508)
T KOG0717|consen 299 NKSFKSEKQLKNHE--------NSKKHKENVAELRQE-MEEEEEDEAQGQAEENELE 346 (508)
T ss_pred cccccchHHHHhhH--------HHHHHHHHHHHHHHH-HHHhhhhhhhhccccchhh
Confidence 2332222 467788888888754 4444333333444444433
No 48
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.93 E-value=66 Score=36.78 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------HHHHHHHHHHhHHHHHHhHHHHHHhHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIV----------------------SEKLRETMEENRIVKQRTKMQHEQNKEE 530 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~----------------------s~sL~r~mEEn~i~r~k~kl~~~~neE~ 530 (657)
++.-+|+.|=.+|.+.++...-|..||++- +++|-.-.-.+.|.|.|..+-.++-+-.
T Consensus 198 EqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 198 EQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888888888888888731 2333222233457777777766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhc
Q 006189 531 MDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ--EREKVKQSI 571 (657)
Q Consensus 531 ~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~--erek~~~~n 571 (657)
-|||+-.-+. .++|.+++.+-++|+++ .||.+.+.+
T Consensus 278 ek~~qy~~Ee-----~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 278 EKLMQYRAEE-----VDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555443332 24667788888888875 666676654
No 49
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.55 E-value=16 Score=42.54 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 006189 542 IRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR 621 (657)
Q Consensus 542 ~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk 621 (657)
.+.+...++.--.+||++|+.-+..+ ++.--+.+.. ..++.+=+ -.|-.++|.+++.+|..+|...+++.||
T Consensus 455 er~l~a~t~kL~~E~e~~q~~~~~~l---~~~~~~~~~e---m~~~r~tl--E~k~~~n~~e~~kkl~~~~qr~l~etKk 526 (588)
T KOG3612|consen 455 ERSLVAATEKLRQEFEELQQTSRREL---PVPLRNFELE---MAEMRKTL--EQKHAENIKEEIKKLAEEHQRALAETKK 526 (588)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhh---hhhhhcchHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666667777777633333 2211122211 22222211 1235788999999999999999999999
Q ss_pred HhHH
Q 006189 622 RHWE 625 (657)
Q Consensus 622 r~~e 625 (657)
++|=
T Consensus 527 KQWC 530 (588)
T KOG3612|consen 527 KQWC 530 (588)
T ss_pred HHHH
Confidence 9983
No 50
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.18 E-value=1.1e+02 Score=32.29 Aligned_cols=128 Identities=21% Similarity=0.303 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH------------HH
Q 006189 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIH------------EA 548 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~------------e~ 548 (657)
|...|+...+.+++-=..|+.+-.++..+--. .+|+|+--.--+||.|+|+ +++||+.+. ++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~----~QKEK~E~DLKkEIKKLQR--~RdQIK~W~~~~diKdk~~L~e~ 79 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQ----NQKEKLEADLKKEIKKLQR--LRDQIKTWLSSNDIKDKKKLLEN 79 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCc----chHHHHHHHHHHHHHHHHH--HHHHHHHHccCcccccHHHHHHH
Confidence 45667777777777777777777777664433 3489999999999999998 677877655 44
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhh-cC---CCCChhhhHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 006189 549 RDEKEENFEKLQQQERE-KVKQS-IA---NPKNTEDYKLRAEE----IAKFITVQDKEMEEFVAARDRLIKFHGE 614 (657)
Q Consensus 549 ~~~kE~~FEkLqq~ere-k~~~~-n~---~~~~~e~~~~r~e~----~~kf~~~Q~ke~e~f~ae~~kL~~~h~~ 614 (657)
|.-=|..-|+...=||+ |++.. +. .++.......-..+ |+.+|+.=...++.|++|.+.|.-...+
T Consensus 80 Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kK 154 (233)
T PF04065_consen 80 RKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKK 154 (233)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444444444432232 22222 11 11111111111222 5566664445789999999998865443
No 51
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.08 E-value=40 Score=40.91 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=6.4
Q ss_pred hhHHHHHHHHH
Q 006189 633 GFDAELTQLME 643 (657)
Q Consensus 633 e~~~~l~~lm~ 643 (657)
+-|+|.++|=|
T Consensus 533 QrDaEi~RL~e 543 (861)
T PF15254_consen 533 QRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHH
Confidence 45666666643
No 52
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=75.99 E-value=2e+02 Score=35.21 Aligned_cols=7 Identities=14% Similarity=0.691 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 006189 355 QELLEYF 361 (657)
Q Consensus 355 ~eL~d~l 361 (657)
..+.+.|
T Consensus 120 ~~~~~~l 126 (1164)
T TIGR02169 120 SEIHDFL 126 (1164)
T ss_pred HHHHHHH
Confidence 3333333
No 53
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=75.55 E-value=29 Score=41.19 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=67.0
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 006189 461 HEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKD 540 (657)
Q Consensus 461 sEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~ 540 (657)
.|......+ +-.+.|..|...|....+.++.+|..+....+++.++.++..-.+.|.-|+++|..-.+.-++.+.++
T Consensus 74 ~e~~~~~r~---~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~ 150 (632)
T PF14817_consen 74 RENEARRRR---ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREY 150 (632)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 56778999999999999999999999999999999999999999999999999988877776666666
Q ss_pred HHHH
Q 006189 541 QIRI 544 (657)
Q Consensus 541 ~~rI 544 (657)
..+|
T Consensus 151 ~~rl 154 (632)
T PF14817_consen 151 TKRL 154 (632)
T ss_pred HHHH
Confidence 5554
No 54
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=75.39 E-value=9.3 Score=35.74 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 458 KSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.+..++..+-+.+.+...+.-+.+..++..=+-.+.++=....+...+|+-+++= |+|+..+| +|||+||
T Consensus 39 ~sF~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~dlhevmiA~~kA~lslq~~vqV------RNKlVeAY-qEIMrMq 108 (109)
T PRK00790 39 ASFASVLGQMAGDAVQTLKAAEATSIQAIKGKADTREVVDAVMQAEQALQTAVAI------RDKVVEAY-LEILRMP 108 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHcCC
Confidence 3566666666653333333333333333332234556666666777888888887 99999999 6788887
No 55
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=74.80 E-value=10 Score=34.90 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHhhchhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQ-RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 458 KSisEiv~E~~Rqm~k~nqlv~~L~nqIe~kn-k~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.+..++....+..++.....-..+...+..-. ..+.++=....+...+|+-+++= |.|+..+| +|||.||
T Consensus 26 ~sF~d~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~dlhevmIA~~kA~ls~q~~vqV------RNKlveAY-qEIMrMQ 96 (97)
T PRK03907 26 GEFSKLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLMLEV------RNKAISAY-KEILRTQ 96 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHcCC
Confidence 47777777777744444443333333333322 24555555556677788888887 99999999 6799887
No 56
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=74.74 E-value=1.6 Score=35.12 Aligned_cols=23 Identities=26% Similarity=0.762 Sum_probs=16.5
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhccc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~g 279 (657)
.+|.||||+. . | +...|+.|-..
T Consensus 1 ~~f~CP~C~~--~----~-~~~~L~~H~~~ 23 (54)
T PF05605_consen 1 DSFTCPYCGK--G----F-SESSLVEHCED 23 (54)
T ss_pred CCcCCCCCCC--c----c-CHHHHHHHHHh
Confidence 3699999973 1 3 37799999554
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=74.59 E-value=2e+02 Score=36.39 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=8.9
Q ss_pred CCcccccChHHHHHHhhccC
Q 006189 346 NDKWTGMGNQELLEYFILYA 365 (657)
Q Consensus 346 dgr~~G~s~~eL~d~lsgF~ 365 (657)
.|+.+----.+|...+..|+
T Consensus 153 ~grvVStKk~dl~~vv~~f~ 172 (1074)
T KOG0250|consen 153 NGRVVSTKKEDLDTVVDHFN 172 (1074)
T ss_pred cCccccccHHHHHHHHHHhC
Confidence 45444333344555444554
No 58
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.03 E-value=1.2e+02 Score=31.80 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006189 509 TMEENRIVKQRTKMQHEQNKEEMDFQEQLFKD--QIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 509 ~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~--~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
+..+...+...++.+..|.+|+..+.+.-..| ..|.|+..+..-|..+..++.+
T Consensus 20 i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 20 ILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556788888888888776655555 4477787777777766666655
No 59
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.98 E-value=2.7e+02 Score=35.79 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=37.8
Q ss_pred ccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHHH---------HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 449 GKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNR---------VVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 449 Ge~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nq---------Ie~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
-+| -+-|++-+|.-|--...- .-++=+|.||... |++-++++..|.+.+.+...++..+..|
T Consensus 225 NRFLILQGEVE~IA~MKPk~~~--e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~e 296 (1293)
T KOG0996|consen 225 NRFLILQGEVEQIAMMKPKAQT--ENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKE 296 (1293)
T ss_pred ceeeeehhhHHHHHhcCCCCCC--CCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 456 677776666554321111 0245577777654 4777778888888877776666655555
No 60
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=73.39 E-value=77 Score=34.24 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=39.1
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 006189 519 RTKMQHEQNKEEMDFQEQLFKDQI-------------RIIHEARDEKEENFEKLQQQEREKVKQSIA 572 (657)
Q Consensus 519 k~kl~~~~neE~~kmQ~~a~~~~~-------------rIi~e~~~~kE~~FEkLqq~erek~~~~n~ 572 (657)
+-.|+..|++|.++-|+..+++.+ =|+++..++++...+.|.+. .+.+.|...
T Consensus 244 eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~-~~q~sqav~ 309 (330)
T KOG2991|consen 244 ELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKG-LEQVSQAVG 309 (330)
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 345788999999999988887754 36777788888888888766 556655543
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.14 E-value=83 Score=37.00 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
...++......++++|..+.++..+|.....+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~ 420 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSE 420 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 34566666777777888888777777766543
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.71 E-value=2.1e+02 Score=34.00 Aligned_cols=67 Identities=31% Similarity=0.445 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 006189 539 KDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIK 610 (657)
Q Consensus 539 ~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~ 610 (657)
+..++-+......||+.+.+|+++ -+++. .+ .+..-+-.|--||-+.|+=|..|+.+....=..|-+
T Consensus 453 r~~~k~~~~e~~~Kee~~~qL~~e-~e~~~---k~-~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQk 519 (594)
T PF05667_consen 453 REEIKEIEEEIRQKEELYKQLVKE-LEKLP---KD-VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQK 519 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhCC---CC-CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455556677889988888876 33332 22 445556668899999999998888766654444433
No 63
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.59 E-value=1.4e+02 Score=36.22 Aligned_cols=136 Identities=19% Similarity=0.338 Sum_probs=84.4
Q ss_pred ccccccHHHHHHHHHhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHH
Q 006189 454 KFEMRSYHEMVVNQIRQMSED-NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMD 532 (657)
Q Consensus 454 kgdLKSisEiv~E~~Rqm~k~-nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~k 532 (657)
.-+|..++....+++..|..- ..-++.|++++....+.|+.||.........|..++.|-++|++ +-..-.+...
T Consensus 139 q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~----qLsk~~~~le 214 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLRE----QLSKTQEELE 214 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHH
Confidence 457777777777777765543 45689999999999999999999887778888888888444433 1111122222
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH--HHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHH
Q 006189 533 FQEQLFKDQIRIIHEA----------RDEKEENFEKLQQ--QEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEME 599 (657)
Q Consensus 533 mQ~~a~~~~~rIi~e~----------~~~kE~~FEkLqq--~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e 599 (657)
-|-.......+-|-+. .-+++++.+..+. ++|.- ...+.+=..+|+..+.-...+|.+|.-
T Consensus 215 ~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~------L~~T~ELLqVRvqSLt~IL~LQEeEL~ 287 (739)
T PF07111_consen 215 AQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDA------LQATAELLQVRVQSLTDILTLQEEELC 287 (739)
T ss_pred HHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3323333444444333 2566777777664 33432 223444555677777777777765544
No 64
>TIGR00205 fliE flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction.
Probab=71.68 E-value=12 Score=34.89 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=48.7
Q ss_pred cHHHHHHHHHhhchhhhHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKE--QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 459 SisEiv~E~~Rqm~k~nqlv~~L~nqIe~k--nk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
|..++....+...+...+.-..+...+..- ...+.++=....+.+.+|+-+++= |+|+..+| +|||+||
T Consensus 38 sF~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~~~dlhevmia~~kA~lslq~~vqV------RNKlveAY-qEIMrMQ 108 (108)
T TIGR00205 38 SFSDLLKNSITDLNKTQLASDKVTEQAALGPSSVDLHDVMIAMQKASMSMSILKEV------RNKAVKAY-QEIMRMQ 108 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHcCC
Confidence 777777777775444444444555554443 336666667777788888988887 99999999 6788886
No 65
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=71.55 E-value=2.6e+02 Score=34.60 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=16.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 006189 583 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAM 619 (657)
Q Consensus 583 r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~l 619 (657)
|.++-.+-.+.++ |..+=.+|..++.++.+++..+|
T Consensus 948 re~ee~k~~k~e~-e~kRK~eEeqr~~qee~e~~l~~ 983 (1259)
T KOG0163|consen 948 REEEEKKRAKAEM-ETKRKAEEEQRKAQEEEERRLAL 983 (1259)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444444444444 44444444444444444444433
No 66
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=70.43 E-value=16 Score=33.69 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred ccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQ-RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 456 dLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~kn-k~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.-.+..++....+.+.+...+.-..+...+..=. -.+.++=....+.+.+|+-+++= |+|+..+| +|||+||
T Consensus 29 ~~~sF~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~~~lhevmiA~~kA~lslq~~vqV------RNKlv~AY-qEIMrMq 101 (102)
T PRK12728 29 AQKSFSDFLKEALNKVNELQVEADNSTEKLVKGEIVDLHDVMIAAQKASISLQLTVQI------RNKVVEAY-QEIMRMQ 101 (102)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHhCC
Confidence 3446778777777744444444444444443332 35556666666778888888887 99999999 6799887
No 67
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.81 E-value=77 Score=38.44 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 527 NKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQ 561 (657)
Q Consensus 527 neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq 561 (657)
.++-.++.+.+++...+++.+.+.+=+..+.+|++
T Consensus 556 ~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 556 KERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666655555555553
No 68
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.05 E-value=3.4e+02 Score=35.00 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=5.6
Q ss_pred chhhhhhccccC
Q 006189 270 LQPLMTHAKTKG 281 (657)
Q Consensus 270 l~~LLqHA~gvG 281 (657)
+.+.-+|++=.|
T Consensus 332 iedik~HpFF~g 343 (1317)
T KOG0612|consen 332 IEDIKNHPFFEG 343 (1317)
T ss_pred HHHHHhCccccC
Confidence 444555554433
No 69
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=68.67 E-value=16 Score=33.97 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhchhhhHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQ--RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 458 KSisEiv~E~~Rqm~k~nqlv~~L~nqIe~kn--k~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.+..++...-+...+...+.-..+...+..=. -.+.++=....+...+|+-+++= |+|+..+| +|||+||
T Consensus 36 ~sF~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~~v~lhevmia~~kA~lslq~~~qV------RNKlv~AY-qEIMrMq 107 (108)
T PRK00253 36 ADFAGQLKAALDKVNDTQQAARTLAEKFELGDPGVSLNDVMIALQKASVSFQAGIQV------RNKLVAAY-QEIMNMQ 107 (108)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHcCC
Confidence 36667776666644444444444444444332 25666666666778888888887 99999999 6788887
No 70
>PHA03346 US22 family homolog; Provisional
Probab=68.61 E-value=8.5 Score=44.51 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCC
Q 006189 115 SKIPAGRVNARPQ 127 (657)
Q Consensus 115 ~~~~~~~~~~~~~ 127 (657)
.+||+|....++-
T Consensus 392 ~~r~~~~~~~~~~ 404 (520)
T PHA03346 392 RRRPRGPPENEDE 404 (520)
T ss_pred hccCCCCCCcccc
Confidence 4566655555533
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=68.18 E-value=14 Score=27.96 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=33.8
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
++|-|++. ..+..+|++.|..|+++. +.....+..++|+++|.|...
T Consensus 2 v~i~~l~~---------~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP---------DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC---------cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 55667643 235778999999999874 555555555689999999864
No 72
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=2.4e+02 Score=32.79 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 006189 544 IIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR 621 (657)
Q Consensus 544 Ii~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk 621 (657)
-..+...-+|+..++|.-+ + +...+.-....+-.|-.||..-|+-|.-+|-+.-.|+..|-++-.---++|.+
T Consensus 356 a~~eei~~~eel~~~Lrse----l-e~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKLRSE----L-EKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHhhHHHHHHHHHH----H-hcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444566666666544 1 11112222555556777888888888877777777777776654444444443
No 73
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.05 E-value=2.8e+02 Score=33.64 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.3
Q ss_pred hhhccccCchhhhhHHHHHHHHHHh
Q 006189 274 MTHAKTKGSKRVKLHRELAELLDEE 298 (657)
Q Consensus 274 LqHA~gvGak~ka~HrALa~lLe~d 298 (657)
..|+.|+=+-.+....+|..||..+
T Consensus 383 ~~H~~GvH~V~L~wl~~L~~fl~~~ 407 (717)
T PF10168_consen 383 CYHNAGVHSVTLPWLSALQEFLESD 407 (717)
T ss_pred EEecCccEEEEeccHHHHHHHhccc
Confidence 6788887555556678888888864
No 74
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.53 E-value=1.7e+02 Score=35.19 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhh
Q 006189 583 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELE 631 (657)
Q Consensus 583 r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~le 631 (657)
..++..+-+..|. .++......|.+.| +....+++++-+.++|.
T Consensus 270 ~~~~~~~~~~~~~---~~L~~~~~~l~~~~--~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 270 EVQEALKESNTLQ---SDLESLEENLVEKK--KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 3334444444443 33335556666666 33344444554555543
No 75
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.05 E-value=3e+02 Score=33.54 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=46.1
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHh
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~ 520 (657)
-+.+.+.+-+|+.+.+.+ |.--...|+...+-+++|+.-+.-++++|..-+.+|.-++++.
T Consensus 90 Ik~WKv~vesd~~qKErk--------Lqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~n 150 (786)
T PF05483_consen 90 IKKWKVQVESDLKQKERK--------LQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKEN 150 (786)
T ss_pred HHHHHhhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhh
Confidence 345667777777665544 4444567889999999999999999999999999976666543
No 76
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.05 E-value=3.6e+02 Score=34.14 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=50.8
Q ss_pred cccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 455 FEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 455 gdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.-+.|.+.+..+... --..++..|++++...+-.+-+||++.+...--|+.+-..+.. .-+.++..|.++++.|
T Consensus 618 ~~f~~~~~~l~~~~~---~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~---~~~er~~~~~~~~~~~ 691 (1072)
T KOG0979|consen 618 RNFFSVSPVLEELDN---RIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKL---LKRERTKLNSELKSYQ 691 (1072)
T ss_pred hhhhccchHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Confidence 345566666555555 5667788888888888888888888888766666554444333 4445666666677766
Q ss_pred HH
Q 006189 535 EQ 536 (657)
Q Consensus 535 ~~ 536 (657)
+.
T Consensus 692 ~r 693 (1072)
T KOG0979|consen 692 QR 693 (1072)
T ss_pred HH
Confidence 64
No 77
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.95 E-value=89 Score=37.94 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=3.0
Q ss_pred cCCCCCc
Q 006189 208 LSDEFDS 214 (657)
Q Consensus 208 ~~dd~Ds 214 (657)
..|+++.
T Consensus 140 i~d~aS~ 146 (771)
T TIGR01069 140 VKDGASE 146 (771)
T ss_pred ECCCcCH
Confidence 4444433
No 78
>COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=65.46 E-value=26 Score=32.58 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRH-SKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 459 SisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~-lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
|+.++....+-.+++..+.-..+..++..-..- |-++=.....-+.+|+-+++= |+|+..+| .|+|.||
T Consensus 35 sF~~~L~~ai~~vn~~Q~~a~~~~~~~~~G~~~~l~dVmia~~KAs~sLq~ai~V------RnKlV~AY-qEImrmq 104 (105)
T COG1677 35 SFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSLQTAIQV------RNKLVSAY-QEIMRMQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHhCc
Confidence 677777777776666666566666655554444 555555555667888888887 99999999 6788887
No 79
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.04 E-value=3.7 Score=51.26 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHhhcCCChhhhh
Q 006189 391 GGYLEAERLHKHFAEQGTDRDSWN 414 (657)
Q Consensus 391 sGf~nA~rLekhFe~qg~GRkdW~ 414 (657)
+-+.+|..|+++-+..-.--.-|.
T Consensus 2006 ndnqDapnLenarEe~ai~fs~lm 2029 (3015)
T KOG0943|consen 2006 NDNQDAPNLENAREEKAIPFSNLM 2029 (3015)
T ss_pred cccccCccHHHHHHhhcccHHHHH
Confidence 334455555555444433333443
No 80
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=65.01 E-value=3.4 Score=50.27 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=6.6
Q ss_pred CCCCCCCCCc
Q 006189 98 GSSGRAPAKT 107 (657)
Q Consensus 98 ~~~~~~~~n~ 107 (657)
||..|++||-
T Consensus 1271 ~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1271 GGGFHPSGNE 1280 (1516)
T ss_pred cccccCCCce
Confidence 3666777775
No 81
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.66 E-value=1.3e+02 Score=30.17 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFE 557 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FE 557 (657)
+.-|..++......+..|+..+..+..++....++ ++.+.+.++.-+.|+.-+|-. +-....-+..-..++.++.+
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~---l~ek~k~~e~l~DE~~~L~l~-~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEE---LKEKNKANEILQDELQALQLQ-LNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444333333 333666666666666555532 23333344444455666666
Q ss_pred HHHHHHH
Q 006189 558 KLQQQER 564 (657)
Q Consensus 558 kLqq~er 564 (657)
++.+.+-
T Consensus 180 Rwm~~k~ 186 (194)
T PF08614_consen 180 RWMQRKA 186 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655433
No 82
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.52 E-value=3.3e+02 Score=33.20 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKE 553 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE 553 (657)
.-..-++|.++|...+..++.+...+..+.....++...+..++.--.........++.-....-.--.|.+.|..+=.|
T Consensus 25 sa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEe 104 (717)
T PF09730_consen 25 SASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEE 104 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33344556666665555555555555554444444444433333322222222222222111111122344444444433
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHH
Q 006189 554 ENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEME 599 (657)
Q Consensus 554 ~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e 599 (657)
++. .|| +.=.-++++.|--+..+-.-.|.+|=.-|+..|..|+.
T Consensus 105 ENi-slQ-Kqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 105 ENI-SLQ-KQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHH-HHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 122 21223355544322222222244554556666764444
No 83
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=63.98 E-value=2.4e+02 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=16.0
Q ss_pred hHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhc
Q 006189 615 KMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 646 (657)
Q Consensus 615 k~~~lkkr~~e~~~~leke~~~~l~~lm~k~~ 646 (657)
++.-+-++-.|+.-.-|-++..+|.-.|.||.
T Consensus 201 EKd~lak~~~e~~~~~e~qlK~ql~lY~aKye 232 (391)
T KOG1850|consen 201 EKDELAKIMLEEMKQVEGQLKEQLALYMAKYE 232 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555553
No 84
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=63.87 E-value=4e+02 Score=33.85 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKL 506 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL 506 (657)
...+.+..|..+|+.....+..++..+..+...|
T Consensus 818 ~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~ 851 (1163)
T COG1196 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEEL 851 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444445555555555555555555555444443
No 85
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=63.79 E-value=3.2e+02 Score=32.76 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH-hHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR-TKMQHEQNKEEM-DFQEQLFKDQIRIIHEARD 550 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k-~kl~~~~neE~~-kmQ~~a~~~~~rIi~e~~~ 550 (657)
.......-|.++-...+..++++|.+...+.-.+.-+=-+.-+++.. ++..-.-+.|++ -|+. ++..+.+|.....
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~e--Le~aq~ri~~lE~ 256 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTE--LEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34445556666666777777777777776655554443343333334 333333333433 3333 3444555666777
Q ss_pred HHHHHHHHHHHHHH
Q 006189 551 EKEENFEKLQQQER 564 (657)
Q Consensus 551 ~kE~~FEkLqq~er 564 (657)
+.|.+|+.|.....
T Consensus 257 e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 257 EVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHhhhh
Confidence 88888888876533
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.72 E-value=2.2e+02 Score=30.81 Aligned_cols=6 Identities=17% Similarity=0.795 Sum_probs=3.0
Q ss_pred Chhhhh
Q 006189 409 DRDSWN 414 (657)
Q Consensus 409 GRkdW~ 414 (657)
.|++|.
T Consensus 135 aK~~WY 140 (325)
T PF08317_consen 135 AKKMWY 140 (325)
T ss_pred HHHHHH
Confidence 345554
No 87
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=63.38 E-value=4.6 Score=48.26 Aligned_cols=6 Identities=17% Similarity=0.911 Sum_probs=3.1
Q ss_pred eeEEEe
Q 006189 54 WEVYVR 59 (657)
Q Consensus 54 ~~~~~~ 59 (657)
|..+.+
T Consensus 512 ~~~~~~ 517 (784)
T PF04931_consen 512 WKTLKK 517 (784)
T ss_pred HHHHHH
Confidence 555544
No 88
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=63.18 E-value=3.5e+02 Score=32.96 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=5.0
Q ss_pred EeCCCccchH
Q 006189 385 IFESSAGGYL 394 (657)
Q Consensus 385 ~F~~dwsGf~ 394 (657)
.+......|.
T Consensus 141 ~~q~~~~~~~ 150 (1179)
T TIGR02168 141 IEQGKISEII 150 (1179)
T ss_pred eecccHHHHH
Confidence 3555555554
No 89
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=63.05 E-value=2.4 Score=50.95 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=0.0
Q ss_pred eccCCCCCCCccccccCchhhhhhcc
Q 006189 253 HCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 253 ~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
-||-|.-+.+. ..|. +||-=..
T Consensus 734 AfPT~aek~~r-~vy~---d~LaDGl 755 (787)
T PF03115_consen 734 AFPTLAEKERR-NVYM---DALADGL 755 (787)
T ss_dssp --------------------------
T ss_pred cCCCchhhhhh-hhHH---hhhccCC
Confidence 35666655443 4344 6664433
No 90
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.46 E-value=2e+02 Score=29.93 Aligned_cols=173 Identities=13% Similarity=0.207 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH-----HhHHHHHHhHHHH
Q 006189 457 MRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ-----RTKMQHEQNKEEM 531 (657)
Q Consensus 457 LKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~-----k~kl~~~~neE~~ 531 (657)
+.++..=+..-.+++.........+.+..+...++.+.|+..+..+...+..++++...+-. -..-+..--+|..
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~ 133 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQ 133 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHH
Confidence 44444444444444445555556667777777888888888888887777777777433222 0000111111222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCChhhhHHHHHHHHhhhhh---hHHHHHH
Q 006189 532 ----DFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIA----NPKNTEDYKLRAEEIAKFITV---QDKEMEE 600 (657)
Q Consensus 532 ----kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~----~~~~~e~~~~r~e~~~kf~~~---Q~ke~e~ 600 (657)
.|+.+-|..+..+-....++=+.++.+.++.-.....+... -...-.+...+...++.++.. +.++++.
T Consensus 134 ~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ 213 (264)
T PF06008_consen 134 RMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAED 213 (264)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222244444444443333344433333320000000000 011112333355556666553 5566666
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHhHHHHHH
Q 006189 601 FVAARDRLIKFHGEKMDAMRRRHWEEEVE 629 (657)
Q Consensus 601 f~ae~~kL~~~h~~k~~~lkkr~~e~~~~ 629 (657)
+-..-....+.+++++..|...+-+-.-.
T Consensus 214 ln~~n~~~l~~~~~k~~~l~~~~~~~~~~ 242 (264)
T PF06008_consen 214 LNRANQKNLEDLEKKKQELSEQQNEVSET 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677776666554443333
No 91
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=60.90 E-value=1.4e+02 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 538 FKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 538 ~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
+..++++|++..+.......+|+++
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777888888888887
No 92
>PRK01482 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=60.73 E-value=38 Score=31.83 Aligned_cols=74 Identities=4% Similarity=0.158 Sum_probs=50.2
Q ss_pred hccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHH
Q 006189 453 QKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKE--QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (657)
Q Consensus 453 kkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~k--nk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~ 530 (657)
.+..-.+..++....+.+.+...+.-+.+..++... ...+.++=....+.+.+|+-+++= |.|+..+| +||
T Consensus 32 ~~~~~~sF~d~L~~Al~~Vn~~Q~~a~~~~~~~~~gg~~~dlhevmIA~qkA~lslql~vqV------RNKlVeAY-qEI 104 (108)
T PRK01482 32 KNKKAKTFKDTLLNAIDDVNNSQLNVSKVTEQAILDPESVDVHDVTIAMAKANMNLSIAKAV------VERSIKAY-QDI 104 (108)
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHH
Confidence 334445788888888885555555555555544432 335566666666778888888887 99999999 567
Q ss_pred HHH
Q 006189 531 MDF 533 (657)
Q Consensus 531 ~km 533 (657)
|+|
T Consensus 105 Mrm 107 (108)
T PRK01482 105 INI 107 (108)
T ss_pred Hhc
Confidence 776
No 93
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=60.60 E-value=4.6 Score=25.84 Aligned_cols=20 Identities=30% Similarity=0.805 Sum_probs=14.0
Q ss_pred eeccCCCCCCCccccccCchhhhhhc
Q 006189 252 WHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 252 f~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
|.||+|+.. |.....|.+|-
T Consensus 1 ~~C~~C~~~------~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS------FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E------ESSHHHHHHHH
T ss_pred CCCcCCCCc------CCcHHHHHHHH
Confidence 789999732 66688888884
No 94
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=60.11 E-value=5.5 Score=47.60 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 006189 289 RELAELLD 296 (657)
Q Consensus 289 rALa~lLe 296 (657)
.+||.+.+
T Consensus 739 ~~La~~Fk 746 (784)
T PF04931_consen 739 EQLAAIFK 746 (784)
T ss_pred HHHHHHHH
Confidence 33443333
No 95
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.06 E-value=4e+02 Score=32.56 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006189 516 VKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEAR--DEKEENFEKLQQQEREKV 567 (657)
Q Consensus 516 ~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~--~~kE~~FEkLqq~erek~ 567 (657)
|+.++..+.....+.-|.|.+.|+.+..-+-+.+ ++.-+..-+|.+++..|+
T Consensus 740 LK~~elqIrkqfq~tck~qtrqyk~~~~~~le~tpk~e~K~l~k~lk~eq~rkl 793 (948)
T KOG0577|consen 740 LKSKELQIRKQFQQTCKTQTRQYKAYRAQLLETTPKDEQKELLKRLKEEQTRKL 793 (948)
T ss_pred hhHHHhhHHHHHHhhhhHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHH
Confidence 3334444555556777888888877664444322 334455666666644443
No 96
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.82 E-value=4.7e+02 Score=33.34 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=57.7
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHS------KALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~l------qeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~ 525 (657)
-+-+|+-=|.+-|.|-. ++|..|.--+..++..-+++ -.+|+.+-+...+|.-|-.++...|.++..+|.
T Consensus 254 erlmDs~fykdRveelk----edN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 254 ERLMDSDFYKDRVEELK----EDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred hhhhhhHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455444555554443 48777766666665555544 347777778888888888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHH---HHHHH
Q 006189 526 QNKEEMDFQEQLFKDQI---RIIHE 547 (657)
Q Consensus 526 ~neE~~kmQ~~a~~~~~---rIi~e 547 (657)
+|.-++ ||.....-+. .||++
T Consensus 330 EnstLq-~q~eqL~~~~ellq~~se 353 (1195)
T KOG4643|consen 330 ENSTLQ-VQKEQLDGQMELLQIFSE 353 (1195)
T ss_pred HHHHHH-HHHHHhhhhhhHhhhhhc
Confidence 766544 3333444333 45543
No 97
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.76 E-value=2.2e+02 Score=32.66 Aligned_cols=158 Identities=23% Similarity=0.335 Sum_probs=87.3
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 463 MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS--------EKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 463 iv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s--------~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
++....| -.-++|......|..-.+.|+.|+.-+.... ..|+++.|| ++...||
T Consensus 240 V~~RgVR---p~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE---------------qqfL~lQ 301 (426)
T smart00806 240 VAQRGVR---PSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE---------------QQFLTLQ 301 (426)
T ss_pred HHHcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 4444444 4678899999999999999999998887543 456666666 3345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcC-CCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 006189 535 EQLFKDQIRIIHEARDEKEENFEKLQQQ--EREKVKQSIA-NPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKF 611 (657)
Q Consensus 535 ~~a~~~~~rIi~e~~~~kE~~FEkLqq~--erek~~~~n~-~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~ 611 (657)
+-..-+.+.-|. .=.+-|.-.+|- ++++---.+. .+.. +...+---+....+.-+.+..+ |-=-
T Consensus 302 edL~~DL~dDL~----ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~-----l~i~~pg~~~~~kd~VL~EV~a----L~Pd 368 (426)
T smart00806 302 EDLIADLKEDLE----KAEETFDLVEQCCEEQEKGPSKNRNKPVS-----LPVPTPGTFNDLKDQVLMEVRA----LKPD 368 (426)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCcccccCCCcc-----CCCCCCCChhHHHHHHHHHHHc----cCCC
Confidence 555544443333 445666666663 3333100000 0000 0000000011111111332223 6667
Q ss_pred HhHhHHHHHH--HhHHHHHHh--hhhhHHHHHHHHHHhcCCccc
Q 006189 612 HGEKMDAMRR--RHWEEEVEL--EKGFDAELTQLMEKYSTHITE 651 (657)
Q Consensus 612 h~~k~~~lkk--r~~e~~~~l--eke~~~~l~~lm~k~~~~~~~ 651 (657)
||.+..|+.+ +.++.++++ --+|++||..+++.-+...+.
T Consensus 369 HEsRLeAIErAEklR~kEle~r~~d~Fq~ELg~FVe~~kLKksG 412 (426)
T smart00806 369 HESRLEAIERAEKLREKELEYRRVDEFEKELGNFVENGKLKKSG 412 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccCCcccCc
Confidence 8878777754 344455443 468999999999988776654
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.50 E-value=4.9e+02 Score=33.49 Aligned_cols=42 Identities=7% Similarity=-0.078 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHH
Q 006189 598 MEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 598 ~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~ 639 (657)
+..|.....+++..+......++..+-++.-+++.+++.-..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~ 433 (1311)
T TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRD 433 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554444333
No 99
>PRK03918 chromosome segregation protein; Provisional
Probab=58.97 E-value=3.9e+02 Score=32.14 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006189 480 YLKNRVVKEQRHSKALEATFSIVSEKL 506 (657)
Q Consensus 480 ~L~nqIe~knk~lqeLE~k~~e~s~sL 506 (657)
.|...++...+.+..++..+..+...+
T Consensus 197 ~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 197 EKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 100
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.96 E-value=1.5e+02 Score=33.75 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH---HH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHE---AR 549 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e---~~ 549 (657)
-.-++|.++...|....+.|+.|+.-+....-.+.++.|. .++.=.+| |+|+.+|...+.+ ..
T Consensus 243 p~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~---------EL~~V~eE-----QqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 243 PSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES---------ELQKVCEE-----QQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH---------HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888877777776655 11111111 2233443333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH----HhH
Q 006189 550 DEKEENFEKLQQQEREKVKQSIANPKNTEDYKLR-AEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR----RHW 624 (657)
Q Consensus 550 ~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r-~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk----r~~ 624 (657)
+.=.+-|.-++|- +.++...+...-..... ..-....+..- .-++..-.|..-|.=-|+.++.|+.+ |..
T Consensus 309 ~k~~etf~lveq~----~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~-~~~~~VL~EV~aL~PDHE~RLeAIerAEKlRqk 383 (424)
T PF03915_consen 309 KKASETFALVEQC----TEEQEKSPSRSRNRPVANLPIPEPGEDPH-EARDQVLGEVRALQPDHESRLEAIERAEKLRQK 383 (424)
T ss_dssp HHHHHHHHHHHHH----CT-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH----HHHHcccCCCCCCCCccCCCCCCCCCChh-hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 2333444444442 11222222111000000 00000000100 01222223333377778888887754 333
Q ss_pred HHHHHhhhhhHHHHHHHHHHhcCCcccc
Q 006189 625 EEEVELEKGFDAELTQLMEKYSTHITEV 652 (657)
Q Consensus 625 e~~~~leke~~~~l~~lm~k~~~~~~~~ 652 (657)
|.++.-.-+|+.||..+++.-+...+.+
T Consensus 384 ele~~~~~~f~~EL~~FV~~~kLKksGG 411 (424)
T PF03915_consen 384 ELEYRRVDEFQKELGNFVEEKKLKKSGG 411 (424)
T ss_dssp ----------------------------
T ss_pred HHHhccccHHHHHHHHHhccCcccccCC
Confidence 3333345689999999999877766543
No 101
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.45 E-value=1.6e+02 Score=34.50 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEK 552 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~k 552 (657)
.+|.++..+...|+.|-+.+..+. +.+.++|-++--+.+|.+++.-+ +|+|+.+-.+..+.++.+....++-
T Consensus 209 dtN~q~~s~~eel~~kt~el~~q~-------Ee~skLlsql~d~qkk~k~~~~E-keel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 209 DTNTQARSGQEELQSKTKELSRQQ-------EENSKLLSQLVDLQKKIKYLRHE-KEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466666666555555444443333 33344555544445566655544 5666777777888888888777788
Q ss_pred HHHHHHHHHHHHHH
Q 006189 553 EENFEKLQQQEREK 566 (657)
Q Consensus 553 E~~FEkLqq~erek 566 (657)
|+.+.++.|..+|.
T Consensus 281 eDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 281 EDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777764444
No 102
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=58.19 E-value=1.9e+02 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=6.3
Q ss_pred HHHhhhhHHHHHHHH
Q 006189 496 EATFSIVSEKLRETM 510 (657)
Q Consensus 496 E~k~~e~s~sL~r~m 510 (657)
+..+++++.+|++++
T Consensus 77 ~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 77 DNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 334444444444443
No 103
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.13 E-value=4.6e+02 Score=32.75 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHH-----HHhHHHHHHhhhhhHHHHHHHHHHhcCCcc
Q 006189 586 EIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMR-----RRHWEEEVELEKGFDAELTQLMEKYSTHIT 650 (657)
Q Consensus 586 ~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lk-----kr~~e~~~~leke~~~~l~~lm~k~~~~~~ 650 (657)
.|+..+..|...+|.|...+..|-++|..-.+..+ ++--|++++-=.++.+++.+-|+..|..+|
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36777778888888888888888888876544433 334445555555566666666666665554
No 104
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=57.72 E-value=3.4e+02 Score=31.00 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=71.9
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHH-------------
Q 006189 504 EKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRI-IHEARDEKEENFEKLQQ---QEREK------------- 566 (657)
Q Consensus 504 ~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rI-i~e~~~~kE~~FEkLqq---~erek------------- 566 (657)
+.|.++.-+ -|+.|+..-+++++.-|..+|+++..- |.| +++-|+-|+|-|. +.-.+
T Consensus 83 erlS~lH~e-----vKd~L~nd~~e~iktwqK~a~H~~vm~G~KE-~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack 156 (472)
T KOG2856|consen 83 ERLSELHLE-----VKDNLINDDVEKIKTWQKEAYHKQVMGGFKE-TKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACK 156 (472)
T ss_pred HHHHHHHHH-----HHHHHhhhHHHHHHHHHhhhhHHHHhcchhh-hHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 389999999999999999999999866 665 4556889998774 21111
Q ss_pred ------HhhhcC--CCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH---HhHHHH---HHhhh
Q 006189 567 ------VKQSIA--NPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR---RHWEEE---VELEK 632 (657)
Q Consensus 567 ------~~~~n~--~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk---r~~e~~---~~lek 632 (657)
++++|. +++-.- +.+. .+|+ -+++...+..|-...+++-++.|.+ .|||-. ++.=+
T Consensus 157 ~EksA~~re~n~kaDsSvsp------eq~k---Klqd-rveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ 226 (472)
T KOG2856|consen 157 EEKSALTREQNAKADSSVSP------EQLK---KLQD-RVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQ 226 (472)
T ss_pred HHHHHHHHHhccccCccCCH------HHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 133333 332221 1121 2344 3455556666667777776666653 676643 44445
Q ss_pred hhHHHHHH
Q 006189 633 GFDAELTQ 640 (657)
Q Consensus 633 e~~~~l~~ 640 (657)
+|+..-.+
T Consensus 227 ~fE~~Rl~ 234 (472)
T KOG2856|consen 227 QFEEKRLQ 234 (472)
T ss_pred HHHHHHHH
Confidence 55544333
No 105
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.65 E-value=4.3e+02 Score=32.26 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=34.5
Q ss_pred cccccHHHHHHHHHhhch--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Q 006189 455 FEMRSYHEMVVNQIRQMS--EDNQQLIYLKNRVVKEQRHSKALEATFSIV----SEKLRETME 511 (657)
Q Consensus 455 gdLKSisEiv~E~~Rqm~--k~nqlv~~L~nqIe~knk~lqeLE~k~~e~----s~sL~r~mE 511 (657)
..|||.+=+......++. +.-.++.-++..--.-+++|.+||++|.-. ..+|++.+|
T Consensus 464 ATiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle 526 (948)
T KOG0577|consen 464 ATIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELE 526 (948)
T ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356665544333333222 234566777777788899999999998743 444454444
No 106
>PRK00106 hypothetical protein; Provisional
Probab=57.52 E-value=3.8e+02 Score=31.58 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=20.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhcCCcccccc
Q 006189 626 EEVELEKGFDAELTQLMEKYSTHITEVAA 654 (657)
Q Consensus 626 ~~~~leke~~~~l~~lm~k~~~~~~~~~~ 654 (657)
...+-+++...=|..-|..|..+.+.+..
T Consensus 197 a~~~a~~~a~~ii~~aiqr~a~~~~~e~t 225 (535)
T PRK00106 197 VKDRSDKMAKDLLAQAMQRLAGEYVTEQT 225 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhe
Confidence 33445566666689999999988876654
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.40 E-value=1.8e+02 Score=27.73 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEEN 555 (657)
Q Consensus 476 qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~ 555 (657)
.-+..|.+.++..+..+.++|..+.....+++.+..+++- -...+..+.+|+.+++-.+..-.. -+.-..+.||-.
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~---~~~~~k~~kee~~klk~~~~~~~t-q~~~e~rkke~E 141 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS---LEAKLKQEKEELQKLKNQLQQRKT-QYEHELRKKERE 141 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3344555555555555555555555555555555444332 333455555666666543332222 222334568888
Q ss_pred HHHHHHH
Q 006189 556 FEKLQQQ 562 (657)
Q Consensus 556 FEkLqq~ 562 (657)
|++|+..
T Consensus 142 ~~kLk~r 148 (151)
T PF11559_consen 142 IEKLKER 148 (151)
T ss_pred HHHHHHH
Confidence 8888864
No 108
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=57.18 E-value=3.7 Score=44.52 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=6.8
Q ss_pred eecCCCCeeeccC
Q 006189 244 EINEPARQWHCPA 256 (657)
Q Consensus 244 ~kn~~~~tf~CP~ 256 (657)
|... ...|+|-+
T Consensus 341 v~r~-k~~wk~~l 352 (375)
T PF03153_consen 341 VTRV-KNKWKCTL 352 (375)
T ss_dssp EEEE-TTEEEEEE
T ss_pred cccc-cceeEEEe
Confidence 3334 56677755
No 109
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.84 E-value=2.9e+02 Score=32.07 Aligned_cols=40 Identities=30% Similarity=0.255 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 525 EQNKEEMDFQEQLFKD---QIRIIHEARDEKEENFEKLQQQER 564 (657)
Q Consensus 525 ~~neE~~kmQ~~a~~~---~~rIi~e~~~~kE~~FEkLqq~er 564 (657)
+.|+-+++=|..-+.+ .+....+...+|++..+.||.+-|
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433332 334444556666666666665533
No 110
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=56.83 E-value=24 Score=31.51 Aligned_cols=15 Identities=47% Similarity=0.713 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHhH
Q 006189 514 RIVKQRTKMQHEQNK 528 (657)
Q Consensus 514 ~i~r~k~kl~~~~ne 528 (657)
.++++-.+++|.||+
T Consensus 36 ~~v~~hI~lLheYNe 50 (83)
T PF07061_consen 36 KIVKRHIKLLHEYNE 50 (83)
T ss_pred HHHHHHHHHHHHHhH
Confidence 367778899999986
No 111
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=56.23 E-value=2.5 Score=37.72 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=0.7
Q ss_pred hhhhhhHHHHHH
Q 006189 223 TRKKSRWFKKFF 234 (657)
Q Consensus 223 ~~k~~k~f~K~y 234 (657)
.+||..||--++
T Consensus 61 ~rkKrrwlwLli 72 (81)
T PF14812_consen 61 PRKKRRWLWLLI 72 (81)
T ss_dssp ----------TT
T ss_pred ccccchhHHHHH
Confidence 456677774433
No 112
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=56.04 E-value=6.9e+02 Score=34.08 Aligned_cols=47 Identities=19% Similarity=0.103 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHH
Q 006189 593 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 593 ~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~ 639 (657)
.|..+.+.-+.|.++..+.-+..+..|+..+-|.+-+|+-+-+..|.
T Consensus 1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr 1551 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLR 1551 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 56667777777777777777777788887777777776666555554
No 113
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.20 E-value=2.6e+02 Score=29.74 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHH-------------HHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMD-------------FQEQLFKD 540 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~k-------------mQ~~a~~~ 540 (657)
.+.++.+|. ++...++.++.|+..+-++...|.+..+ .+.+|..++-.--.|+.. .+..-..+
T Consensus 43 ~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~ne---L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 43 MNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNE---LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555 6666666666666666555444433222 111121111111111211 12233456
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHH
Q 006189 541 QIRIIHEAR----DEKEENFEKLQQQ 562 (657)
Q Consensus 541 ~~rIi~e~~----~~kE~~FEkLqq~ 562 (657)
..+||-+.+ +++|.-|+++|.+
T Consensus 119 ~keiIs~kr~~~~Ka~e~~~kRkQds 144 (246)
T KOG4657|consen 119 SKEIISQKRQALSKAKENAGKRKQDS 144 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778888877 7888888886654
No 114
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.93 E-value=2.8e+02 Score=29.16 Aligned_cols=168 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHH--H
Q 006189 466 NQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQI--R 543 (657)
Q Consensus 466 E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~--r 543 (657)
++-.+|..-|.-++.+=.+|-......+.|+..+.....+....+.. +...|..|+..++...-.-.. .
T Consensus 1 ~EK~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~---------~~~~ye~el~~lr~~id~~~~eka 71 (312)
T PF00038_consen 1 NEKEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSR---------IKEMYEEELRELRRQIDDLSKEKA 71 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH---------HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcc---------cccchhhHHHHhHHhhhhHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 006189 544 IIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEE-IAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRR 622 (657)
Q Consensus 544 Ii~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~-~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr 622 (657)
-+.-.++.=....+.++.+=.+...............+...+. ...-+.++. .+..+..|..-|.+.|++.+..|+.+
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~-~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN-QIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhc
Q ss_pred h-HHHHHHhhhhhHHHHHHHHH
Q 006189 623 H-WEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 623 ~-~e~~~~leke~~~~l~~lm~ 643 (657)
+ -..-+++..-+..+|+..|.
T Consensus 151 ~~~~~~~e~~~~~~~dL~~~L~ 172 (312)
T PF00038_consen 151 IQSSVTVEVDQFRSSDLSAALR 172 (312)
T ss_dssp ----------------HHHHHH
T ss_pred cccccceeecccccccchhhhh
No 115
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.41 E-value=7.3e+02 Score=33.87 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCCccCccCCCCCCCcCCCCCCCCCCCC
Q 006189 67 SGTTKSFGSQNSNYKAWGHLDSTQKPGM 94 (657)
Q Consensus 67 ~~~~~~w~~~~~~~~aw~~~~~~~~~~~ 94 (657)
++-.++|-..|+...|+|+..+++-.+-
T Consensus 207 ~~le~qi~q~npvLeaFGNa~tvrn~Ns 234 (1930)
T KOG0161|consen 207 GTLEDQILQANPVLEAFGNAKTVRNDNS 234 (1930)
T ss_pred CChHHHHHHhCchHHHhcChhhhcCCCC
Confidence 5568889899999999999888765543
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.33 E-value=1.7e+02 Score=35.35 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=17.1
Q ss_pred CeeeccC-------CCCCCCccccccCchhhhhhccccC
Q 006189 250 RQWHCPA-------CQGGPGAIDWYRGLQPLMTHAKTKG 281 (657)
Q Consensus 250 ~tf~CP~-------C~gkkk~~D~Y~dl~~LLqHA~gvG 281 (657)
..|.||. |+. .+|- ||..=-|+.+..
T Consensus 363 ~~~~cpI~L~~Dp~~~~-----ryy~-~H~~GvH~V~L~ 395 (717)
T PF10168_consen 363 LSYSCPIRLHRDPLNPD-----RYYC-YHNAGVHSVTLP 395 (717)
T ss_pred CCCCcceEEEecCCCCc-----eEEE-EecCccEEEEec
Confidence 5677765 432 2366 888888888765
No 117
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=54.24 E-value=26 Score=36.79 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=39.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC--CCCcceEEEEeCCCccch
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP--QGHRGMSVLIFESSAGGY 393 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~--~GH~G~aVV~F~~dwsGf 393 (657)
.++|-|++... +...|.+.|+.|.++ .|+.++.+ ....|+++|.|.+--...
T Consensus 271 ~lfV~NL~~~~---------~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSPDT---------DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 37789997643 467899999999997 67888875 345899999998755443
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.21 E-value=3.1e+02 Score=29.60 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----------CCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 006189 542 IRIIHEARDEKEENFEKLQQQEREKVKQSIA----------NPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKF 611 (657)
Q Consensus 542 ~rIi~e~~~~kE~~FEkLqq~erek~~~~n~----------~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~ 611 (657)
|..+.+++.+..+.|. +|.++.+.|. ++.+--|-=.|+--|...+..=.+.++.+..+...|...
T Consensus 89 I~~~~~~I~~r~~~l~-----~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~k 163 (265)
T COG3883 89 IAELKENIVERQELLK-----KRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEK 163 (265)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444443 3666555533 233444444466666655554444455555444444332
Q ss_pred ------HhHhHHHHHHHhHHHHHHhhhhh
Q 006189 612 ------HGEKMDAMRRRHWEEEVELEKGF 634 (657)
Q Consensus 612 ------h~~k~~~lkkr~~e~~~~leke~ 634 (657)
.-++.+++...+......|+.+.
T Consensus 164 q~~l~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 164 QAALEDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355556666666666665553
No 119
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.46 E-value=4.5e+02 Score=31.18 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHH
Q 006189 595 DKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 595 ~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~ 639 (657)
+.+..-|++ .+..-+..+..|+-++-+..+||++=+|.+++
T Consensus 334 ~e~~r~~e~----~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~ 374 (546)
T KOG0977|consen 334 DEDQRSFEQ----ALNDKDAEIAKMREECQQLSVELQKLLDTKIS 374 (546)
T ss_pred hhhhhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence 445666666 44444557788888888888888876665543
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.13 E-value=4.3e+02 Score=31.66 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q 006189 586 EIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEK 644 (657)
Q Consensus 586 ~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k 644 (657)
.+..-+..|.++.+.+ ..|..+.++++..|-+++ +..++...+..+|++.
T Consensus 98 ~L~~qlqaqv~~ne~L----s~L~~EqEerL~ELE~~l-----e~~~e~~~D~~kLLe~ 147 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQL----SRLNQEQEERLAELEEEL-----ERLQEQQEDRQKLLEQ 147 (617)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhh
Confidence 3333334455444433 235556666665554333 2233333445555553
No 121
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.73 E-value=6.9e+02 Score=33.11 Aligned_cols=28 Identities=4% Similarity=0.116 Sum_probs=11.5
Q ss_pred hHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 006189 615 KMDAMRRRHWEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 615 k~~~lkkr~~e~~~~leke~~~~l~~lm~ 643 (657)
....++.++....-.+ +.|..++..++-
T Consensus 457 qL~elE~kL~~lea~l-eql~~~~~~l~~ 484 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAH-SQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3333444443333333 344444444443
No 122
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=52.42 E-value=5.4e+02 Score=31.76 Aligned_cols=74 Identities=26% Similarity=0.349 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEK 552 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~k 552 (657)
|....+..|+++++.--+..-.+|..+.-+-.-|..-|.+.++ +|+.+-+.|++....|
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~---------------------~ree~eq~i~~~~~~~ 79 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQ---------------------VREEQEQKIHEAVAKK 79 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHH---------------------hhHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999988888888888443 4556666666666667
Q ss_pred HHHHHHHHHHHHHHH
Q 006189 553 EENFEKLQQQEREKV 567 (657)
Q Consensus 553 E~~FEkLqq~erek~ 567 (657)
-..|++++.+--.++
T Consensus 80 s~e~e~~~~~le~~l 94 (769)
T PF05911_consen 80 SKEWEKIKSELEAKL 94 (769)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777765544444
No 123
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=52.41 E-value=4.8e+02 Score=31.14 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=36.3
Q ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q 006189 515 IVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIH------------EARDEKEENFEKLQQQEREK 566 (657)
Q Consensus 515 i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~------------e~~~~kE~~FEkLqq~erek 566 (657)
.+-+|+|+.---.+||.|+|+ .++||+.+. ++|+==|...|+.+.=||+.
T Consensus 36 n~sqkeK~e~DLKkEIKKLQR--lRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~ 97 (575)
T KOG2150|consen 36 NVSQKEKLESDLKKEIKKLQR--LRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEM 97 (575)
T ss_pred ChhHHHHHHHHHHHHHHHHHH--HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455699999999999999998 577887655 55555566666666645554
No 124
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=52.33 E-value=7.8 Score=41.37 Aligned_cols=24 Identities=50% Similarity=0.602 Sum_probs=11.2
Q ss_pred CCCCCCCCCccccCC-CCCchhhhh
Q 006189 196 DSNVSDDSDDELLSD-EFDSDTSQK 219 (657)
Q Consensus 196 ~~~~~~d~dd~~~~d-d~Dsd~se~ 219 (657)
+++..+|+|+|.++| ++|+|+-|+
T Consensus 237 ~~~~~~~s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 237 DSDESDDSDEDSDSEDESDSDEIEE 261 (303)
T ss_pred hhhhhhhcccccccccCCchhhHHH
Confidence 344555555553333 344444444
No 125
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=52.13 E-value=10 Score=46.06 Aligned_cols=10 Identities=20% Similarity=0.703 Sum_probs=6.6
Q ss_pred CCeeeccCCC
Q 006189 249 ARQWHCPACQ 258 (657)
Q Consensus 249 ~~tf~CP~C~ 258 (657)
--+|-||-+.
T Consensus 419 Pftf~~P~s~ 428 (840)
T PF04147_consen 419 PFTFPCPSSH 428 (840)
T ss_pred CceecCCCCH
Confidence 3577788764
No 126
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.82 E-value=5.5e+02 Score=32.22 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=53.7
Q ss_pred hhccccccHHHHHHHHHhhchhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH-HhHHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSED-----NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ-RTKMQHE 525 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~-----nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~-k~kl~~~ 525 (657)
+++|++.....| .||+.. +..-.--.++|+.|-+.+.+||.++..-+-...++..---|+-. +.+|| +
T Consensus 891 K~egEltcaE~i-----~q~kdee~altdhekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLh-a 964 (1424)
T KOG4572|consen 891 KKEGELTCAECI-----KQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLH-A 964 (1424)
T ss_pred HhhhhhHHHHHH-----HHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhh-H
Confidence 677777655443 333322 22222334567777777777777665443333322211111111 33333 3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 526 QNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV 567 (657)
Q Consensus 526 ~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~ 567 (657)
. +..--++-|...|.+++.+.+.||+...--+-++-+++
T Consensus 965 E---~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~ 1003 (1424)
T KOG4572|consen 965 E---IDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIE 1003 (1424)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 23333456777788888888887765433333334443
No 127
>PRK04863 mukB cell division protein MukB; Provisional
Probab=51.76 E-value=7.1e+02 Score=32.99 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=4.2
Q ss_pred HHHHHHHhh
Q 006189 291 LAELLDEEL 299 (657)
Q Consensus 291 La~lLe~dl 299 (657)
|-++++..+
T Consensus 197 F~kLf~tai 205 (1486)
T PRK04863 197 FYRLIEASL 205 (1486)
T ss_pred HHHHHHHHH
Confidence 445555443
No 128
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.13 E-value=4.7e+02 Score=30.76 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHH-hhhc-CCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006189 551 EKEENFEKLQQQEREKV-KQSI-ANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFH 612 (657)
Q Consensus 551 ~kE~~FEkLqq~erek~-~~~n-~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h 612 (657)
..-+.||++-|+ |+++ ++.+ +++ ..+++.|-|..|+.++..-..+.+++....
T Consensus 365 Is~e~fe~mn~E-re~L~reL~~i~~--------~~~~L~k~V~~~~leaq~~~~slek~~~~~ 419 (622)
T COG5185 365 ISTEQFELMNQE-REKLTRELDKINI--------QSDKLTKSVKSRKLEAQGIFKSLEKTLRQY 419 (622)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHhcc--------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445789988887 7776 4443 344 456677777777777776656665555443
No 129
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=51.08 E-value=71 Score=28.89 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Q 006189 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (657)
Q Consensus 476 qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~ 518 (657)
+.++.+..++...|-.|..||.+..-+...|+.+++.|+-+|+
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~ 68 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRL 68 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3566777788888899999999999999999999998665444
No 130
>PLN03188 kinesin-12 family protein; Provisional
Probab=50.75 E-value=7e+02 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHh
Q 006189 597 EMEEFVAARDRLIKFHGEKMDAMRRRH 623 (657)
Q Consensus 597 e~e~f~ae~~kL~~~h~~k~~~lkkr~ 623 (657)
|.++.-.+-+||.+.|+..+..|+.+.
T Consensus 1226 e~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1226 EAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555444
No 131
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.66 E-value=14 Score=41.60 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.2
Q ss_pred CCCCCCCccccCCCC
Q 006189 198 NVSDDSDDELLSDEF 212 (657)
Q Consensus 198 ~~~~d~dd~~~~dd~ 212 (657)
+..||+|.|.+++++
T Consensus 286 eN~ddd~~d~d~e~~ 300 (514)
T KOG3130|consen 286 ENIDDDDGDNDHEAL 300 (514)
T ss_pred hcccccccccchhhh
Confidence 444555554444444
No 132
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=50.39 E-value=3.1e+02 Score=28.38 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=14.5
Q ss_pred hHHHHHHHhHHHHHHhhhhhHHHHHH
Q 006189 615 KMDAMRRRHWEEEVELEKGFDAELTQ 640 (657)
Q Consensus 615 k~~~lkkr~~e~~~~leke~~~~l~~ 640 (657)
+-..|.+|.-+....|...++.|.+.
T Consensus 147 rE~~i~krl~e~~~~l~~~i~~Ek~~ 172 (247)
T PF06705_consen 147 REENILKRLEEEENRLQEKIEKEKNT 172 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555443
No 133
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=49.87 E-value=2.8e+02 Score=29.01 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhHHHHHHh
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSI----VSEKLRETMEENRIVKQRT 520 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e----~s~sL~r~mEEn~i~r~k~ 520 (657)
+.+|.-|..+|+.-.+.+..++..|-. ...+|.+..-+.+-+++|.
T Consensus 93 ~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs 142 (223)
T cd07605 93 GELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKS 142 (223)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999887764 3456666666655555443
No 134
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.80 E-value=2.3e+02 Score=35.79 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEK 505 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~s 505 (657)
+..+.++++.......++.++|..++..
T Consensus 271 ~~pi~~~~eeLe~~~~et~~~~s~~~~~ 298 (1072)
T KOG0979|consen 271 IKPIEDKKEELESEKKETRSKISQKQRE 298 (1072)
T ss_pred hhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence 3333333333333334444444443333
No 135
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.80 E-value=5.2e+02 Score=30.85 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=46.2
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKL 506 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL 506 (657)
++..|+.-++..|......+....+.|.-|+..|+.+...++.|......+.-.+
T Consensus 270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888999999999999999999999988887765544
No 136
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=49.71 E-value=33 Score=34.01 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 006189 530 EMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 609 (657)
Q Consensus 530 ~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~ 609 (657)
+-+|...|-..--+++.+....=+...+.|++..+......-......-+.++++.++..-..++. ....|++|+....
T Consensus 7 l~~le~~F~~~Rd~lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~-i~~~~~~e~~~a~ 85 (205)
T PF08598_consen 7 LAKLEKQFAELRDQLYRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLES-IEREYEAERQQAE 85 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333444444433444444444444444444443333332222222222223333333222222232 2345778888888
Q ss_pred HHHhHhHHHHHHHhHHHHHHhhhhhH
Q 006189 610 KFHGEKMDAMRRRHWEEEVELEKGFD 635 (657)
Q Consensus 610 ~~h~~k~~~lkkr~~e~~~~leke~~ 635 (657)
+.|+..+..|+.++.++--+--++++
T Consensus 86 ~e~~~~~~~lre~l~~~l~ek~~~L~ 111 (205)
T PF08598_consen 86 QEYESEKRELRERLLEELEEKRRRLE 111 (205)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777665544444333
No 137
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.52 E-value=3.2e+02 Score=33.34 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=15.2
Q ss_pred ccCCCCCchhhhhhhhhhhhhhHHHHHHHH
Q 006189 207 LLSDEFDSDTSQKSHDTRKKSRWFKKFFES 236 (657)
Q Consensus 207 ~~~dd~Dsd~se~s~e~~k~~k~f~K~y~~ 236 (657)
...|+++.+=.+.-...+..+.+.....+.
T Consensus 144 ~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~ 173 (782)
T PRK00409 144 EVKDSASEKLRGIRRQLRRKKSRIREKLES 173 (782)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555554444444445555544443
No 138
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=49.52 E-value=22 Score=28.61 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHhHHHHHHhHHHHHHhHH
Q 006189 501 IVSEKLRETMEENRIVKQRTKMQHEQNKE 529 (657)
Q Consensus 501 e~s~sL~r~mEEn~i~r~k~kl~~~~neE 529 (657)
.++.|++++|+|.. +|.+.+.+||++
T Consensus 5 ~iT~SM~~ai~eT~---rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 5 KITDSMQKAIDETN---RRREIQIAYNKE 30 (44)
T ss_dssp S--HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 47889999999944 488899999987
No 139
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=49.21 E-value=17 Score=43.83 Aligned_cols=11 Identities=18% Similarity=0.737 Sum_probs=8.6
Q ss_pred CCCCcccccCC
Q 006189 149 EHGWNWQSRAG 159 (657)
Q Consensus 149 ~~g~~w~~~~~ 159 (657)
++||....-.+
T Consensus 865 ~GgW~fL~~~~ 875 (960)
T KOG1189|consen 865 DGGWSFLNVES 875 (960)
T ss_pred cCCeeeecCCC
Confidence 78999887655
No 140
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.07 E-value=5.4e+02 Score=30.85 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 480 YLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 480 ~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
.|...+....-..+.|-..=.++...|+++.++
T Consensus 44 s~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~ 76 (611)
T KOG2398|consen 44 SFAESWLVMRTSTEAMAKSHLELSRELQDLIKD 76 (611)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555554
No 141
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.65 E-value=6.2e+02 Score=31.35 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHh
Q 006189 601 FVAARDRLIKFHGEKMDAMRRRH 623 (657)
Q Consensus 601 f~ae~~kL~~~h~~k~~~lkkr~ 623 (657)
+++-..++++.|.++++.+-+.+
T Consensus 936 le~~lkrm~~~~k~ema~iErec 958 (1187)
T KOG0579|consen 936 LEAMLKRMAEKHKEEMASIEREC 958 (1187)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33555667777777666655443
No 142
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=48.20 E-value=2.5e+02 Score=26.65 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 006189 536 QLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEK 615 (657)
Q Consensus 536 ~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k 615 (657)
.|.+.+.++|.+++..-.+..++...+ -.+..++++..+.++++ .++++++..-+.+
T Consensus 25 eAkEe~~~~i~eAr~eareiieeaE~e--------------------A~~~~~e~l~~~~ee~e---~ea~eI~~~ae~~ 81 (108)
T COG2811 25 EAKEEAEQIIKEAREEAREIIEEAEEE--------------------AEKLAQEILEEAREEAE---EEAEEILAEAEKE 81 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 355555566666555555444444333 34456777777777777 8888888888888
Q ss_pred HHHHHHHhHHH
Q 006189 616 MDAMRRRHWEE 626 (657)
Q Consensus 616 ~~~lkkr~~e~ 626 (657)
..+|..+..+.
T Consensus 82 ~~~~~~ka~~~ 92 (108)
T COG2811 82 ASAILSKAAEG 92 (108)
T ss_pred HHHHHHHhHhh
Confidence 88887764433
No 143
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=47.96 E-value=26 Score=30.50 Aligned_cols=44 Identities=27% Similarity=0.437 Sum_probs=26.2
Q ss_pred eccCCCCCCCccccccCchhhhhhccccC---c-----hhhhhHHHHHHHHHH
Q 006189 253 HCPACQGGPGAIDWYRGLQPLMTHAKTKG---S-----KRVKLHRELAELLDE 297 (657)
Q Consensus 253 ~CP~C~gkkk~~D~Y~dl~~LLqHA~gvG---a-----k~ka~HrALa~lLe~ 297 (657)
.||+|..+...+| |+|..-|-+--+..| . --...||.|++-+..
T Consensus 7 ~c~~~~~~~~~iD-YKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~l~~aIKr 58 (70)
T TIGR00165 7 YCRFTAEGIQFID-YKDLDLLKKFISERGKILPRRITGTSAKYQRRLARAIKR 58 (70)
T ss_pred CCCccCCCCCcCC-ccCHHHHHHhcCCCCeEcCCccCCcCHHHHHHHHHHHHH
Confidence 5999986666689 996655544433334 1 223556666655553
No 144
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.45 E-value=2.1e+02 Score=28.66 Aligned_cols=85 Identities=21% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENF 556 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~F 556 (657)
.-..|+.+|...+..+++++.++......|..+..++.-++.+.+-+...-+|..+.-+...+..+ .++=+...-|+.+
T Consensus 89 ~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~-~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 89 SKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ-ALQLQLNMLEEKL 167 (194)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334466667777777777777777777777777777666666665555555555555544443332 1112223344445
Q ss_pred HHHHHH
Q 006189 557 EKLQQQ 562 (657)
Q Consensus 557 EkLqq~ 562 (657)
.+|+++
T Consensus 168 ~~l~~E 173 (194)
T PF08614_consen 168 RKLEEE 173 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 145
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=46.81 E-value=17 Score=43.15 Aligned_cols=9 Identities=22% Similarity=0.771 Sum_probs=6.9
Q ss_pred CCCCCcccc
Q 006189 148 LEHGWNWQS 156 (657)
Q Consensus 148 ~~~g~~w~~ 156 (657)
+.+||+...
T Consensus 916 edGgW~fL~ 924 (1001)
T COG5406 916 EDGGWSFLM 924 (1001)
T ss_pred hcCcceeee
Confidence 578998776
No 146
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=46.67 E-value=12 Score=39.49 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhccccC
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKG 281 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~gvG 281 (657)
.+-|+|.||+- . |.+.-+|+.|--||.
T Consensus 237 ~eh~YC~fCG~-----~-y~~~edl~ehCPGvn 263 (268)
T KOG1994|consen 237 SEHYYCFFCGI-----K-YKDEEDLYEHCPGVN 263 (268)
T ss_pred ccceEEEEecc-----c-cCCHHHHHHhCCCCC
Confidence 57899999974 3 888999999988864
No 147
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.59 E-value=5.2e+02 Score=29.96 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhH-HHHHHHHHHHHHHHHHHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK-EEMDFQEQLFKDQIRIIH 546 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ne-E~~kmQ~~a~~~~~rIi~ 546 (657)
|+.|.++-++..-.++.+.-+|. .|||||+-+++-.-.+|+..+ |+--++--.++.++-.+.
T Consensus 52 v~slsq~Nkvlk~elet~k~kck-------i~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~k 114 (552)
T KOG2129|consen 52 VSSLSQRNKVLKGELETLKGKCK-------IMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFK 114 (552)
T ss_pred HHHHHhhhhhhhhhHHhhhhHHH-------HHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhc
Confidence 44444444444445555555554 478888888887777776555 333333344444444443
No 148
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.37 E-value=7.5e+02 Score=31.69 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHH
Q 006189 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (657)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~ 530 (657)
.-+..++....+.-+.|+.++.++.+++..+...+--++...|.+..+++++
T Consensus 397 Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 397 EELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444555555554444
No 149
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=45.46 E-value=4.4e+02 Score=28.73 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH----------hHHHHHHhHHHHHHHHHHHHHHH--HHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR----------TKMQHEQNKEEMDFQEQLFKDQI--RII 545 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k----------~kl~~~~neE~~kmQ~~a~~~~~--rIi 545 (657)
+..|...|....+-.+..+..+.+....|..--.+...+|.+ ..+-..+..++.+++...-.... .++
T Consensus 71 ~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~~v 150 (339)
T cd09235 71 IQTIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADKIV 150 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444455555555554444443444444 34555666677777665554433 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 006189 546 HEARDEKEENFEKLQQQEREK--VKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEK 615 (657)
Q Consensus 546 ~e~~~~kE~~FEkLqq~erek--~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k 615 (657)
.+.-...+..|+-|-.-.++. ...+ ..+. ... .+..+-.-++.-..+++.+..+|..+++.-..+
T Consensus 151 ~~k~~~~~~~l~lLs~~~~~l~~~lPs-s~~~--~~~--~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~ 217 (339)
T cd09235 151 REKYESHREGIELLSKPEEELANAIPS-ASPA--KTL--QGSEAVQELRQLMEQVETIKAEREVIESELKSA 217 (339)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhCCC-CCCC--CCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666777777664322221 1111 1110 010 222333334444456677778888876665444
No 150
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=45.37 E-value=9.3 Score=25.02 Aligned_cols=20 Identities=25% Similarity=0.718 Sum_probs=15.2
Q ss_pred eeccCCCCCCCccccccCchhhhhhc
Q 006189 252 WHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 252 f~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
|.||.|+. - |.....|.+|-
T Consensus 1 y~C~~C~~-----~-f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGK-----S-FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTE-----E-ESSHHHHHHHH
T ss_pred CCCCCCCC-----c-cCCHHHHHHHH
Confidence 78999973 2 67677888883
No 151
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.16 E-value=4.3e+02 Score=28.50 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=24.6
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKAL 495 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeL 495 (657)
..+++|.+..+.....+. .-.++|..|..+|.+.++.+.-|
T Consensus 67 ~ak~eLqe~eek~e~~l~---~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLS---KLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555544 56666666666666666666555
No 152
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.42 E-value=5.6e+02 Score=29.64 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=79.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 471 MSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARD 550 (657)
Q Consensus 471 m~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~ 550 (657)
+++-+.-|.+|.+.++..+++++.|++.+.+-..+++..|.+.. .++...| -...+++.++++
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~-----K~iA~~y------------lr~rk~~eK~~e 290 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGK-----KQIAITY------------LRARKLLEKDLE 290 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----hHHHHHH------------HHHHHHHHhhHH
Confidence 34567778899999999999999999999999999998888732 2222222 223455555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHH----HHHHHhhhhh---hHHHHHHHHHHHHHHHHHHhHhHHHHHHHh
Q 006189 551 EKEENFEKLQQQEREKVKQSIANPKNTEDYKLR----AEEIAKFITV---QDKEMEEFVAARDRLIKFHGEKMDAMRRRH 623 (657)
Q Consensus 551 ~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r----~e~~~kf~~~---Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~ 623 (657)
.+-.....|++= + ++++.+.+...=+- =.+.-|.|.. -.-.++++.++....+..|++=-.+|-.--
T Consensus 291 r~~~~l~~l~~v-----l-~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~ 364 (439)
T KOG2911|consen 291 RKVSSLNNLETV-----L-SQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYN 364 (439)
T ss_pred HHHHHHHHHHHH-----H-HHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCC
Confidence 555555555443 2 22222222211111 1123344433 232367777777777777766444443211
Q ss_pred ----HHHHHHhhhhhH
Q 006189 624 ----WEEEVELEKGFD 635 (657)
Q Consensus 624 ----~e~~~~leke~~ 635 (657)
-.+.-+||||++
T Consensus 365 ~~~~d~~de~lEkEL~ 380 (439)
T KOG2911|consen 365 VNNIDFEDEDLEKELE 380 (439)
T ss_pred CCCCccchHHHHHHHH
Confidence 234445555544
No 153
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=43.99 E-value=1.6e+02 Score=31.51 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 486 e~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
..|..++.+||+..-.+++ ||.||+.+...+++.|+-.+.-+
T Consensus 86 DrKKaRm~eme~~i~dL~e-------en~~L~~en~~Lr~~n~~L~~~n 127 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTE-------ENEILQNENDSLRAINESLLAKN 127 (292)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777776666544 44444444444555555444433
No 154
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=43.81 E-value=3.6e+02 Score=27.20 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006189 522 MQHEQNKEEMDFQEQLFKDQIRIIHEAR 549 (657)
Q Consensus 522 l~~~~neE~~kmQ~~a~~~~~rIi~e~~ 549 (657)
+++.|+..|+.+...|++...+--.+.+
T Consensus 32 ~~~~Yr~~m~alR~~f~ee~~~~~~~~~ 59 (170)
T PF14943_consen 32 RYNNYRTQMRALRSEFREEVLRKKYEEE 59 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5777888888888777777665544433
No 155
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=43.77 E-value=13 Score=45.92 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=9.6
Q ss_pred chhhhHHHHHHHHHH
Q 006189 471 MSEDNQQLIYLKNRV 485 (657)
Q Consensus 471 m~k~nqlv~~L~nqI 485 (657)
++=..++|+++...+
T Consensus 591 Iscmgq~i~~fgD~l 605 (1233)
T KOG1824|consen 591 ISCMGQIIANFGDFL 605 (1233)
T ss_pred HHHHHHHHHHHhhhh
Confidence 345777777777543
No 156
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=43.64 E-value=4.5e+02 Score=31.11 Aligned_cols=63 Identities=30% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 494 ALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQ 560 (657)
Q Consensus 494 eLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLq 560 (657)
.+...+..++...+.+-|+ +-.|++.+-.|.||+-|+-.+.-+-+.+| ..++-+||+.=+-||
T Consensus 202 ~~~KelrdtN~q~~s~~ee---l~~kt~el~~q~Ee~skLlsql~d~qkk~-k~~~~Ekeel~~~Lq 264 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEE---LQSKTKELSRQQEENSKLLSQLVDLQKKI-KYLRHEKEELDEHLQ 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHH
Confidence 4455555555555555444 23366666666666666655544433322 223444444444444
No 157
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.25 E-value=8.5e+02 Score=31.45 Aligned_cols=19 Identities=0% Similarity=-0.139 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006189 477 QLIYLKNRVVKEQRHSKAL 495 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeL 495 (657)
.+..+...+.+....++.+
T Consensus 766 ~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 766 DIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3444444444444444333
No 158
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=43.02 E-value=2.9e+02 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=26.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHH
Q 006189 583 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEE 626 (657)
Q Consensus 583 r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~ 626 (657)
...++++|+..|-|+.| ...-.||..-..+--.++-.+-|.
T Consensus 55 ~~~~Y~~~l~e~RkeaE---~ka~eiI~~Akq~As~i~L~isE~ 95 (111)
T PRK06397 55 SLNMYNAALMEARKEAE---KKAVEIINKAKQEASLIKLKISED 95 (111)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccCHH
Confidence 45678888888888887 444557766665555555444443
No 159
>PHA02562 46 endonuclease subunit; Provisional
Probab=42.93 E-value=5.5e+02 Score=29.11 Aligned_cols=36 Identities=3% Similarity=0.057 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
.+..+..+++..+.++..++..+......|+...++
T Consensus 189 ~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~ 224 (562)
T PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDE 224 (562)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444544444433444443333
No 160
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=42.80 E-value=11 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=17.5
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.|.|..|.. . |..+..|+.|-.
T Consensus 1 ~~~C~~C~~-----~-F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGK-----T-FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTE-----E-ESSHHHHHHHHC
T ss_pred CCCCCccCC-----c-cCChhHHHHHhH
Confidence 489999963 3 888999999943
No 161
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.67 E-value=5e+02 Score=28.56 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Q 006189 472 SEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEA--- 548 (657)
Q Consensus 472 ~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~--- 548 (657)
.+-.+.+..++.+...+|..+.+|=....+.........++..-+|.+...+.+--.+ +..-+.....-+...
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e----L~~~~~~l~e~~~~~~~~ 105 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE----LRKEYRELKEKRNEFNLG 105 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhcc
Q ss_pred ---HHHHHHHHHHHHHH----------HHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHh
Q 006189 549 ---RDEKEENFEKLQQQ----------EREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEK 615 (657)
Q Consensus 549 ---~~~kE~~FEkLqq~----------erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k 615 (657)
....+...++|.-. +++.|.+-.-...--++.....+.-.++.+++. ++..|.. -...++++
T Consensus 106 ~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~a-ei~~lk~----~~~e~~ek 180 (294)
T COG1340 106 GRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKA-EIDELKK----KAREIHEK 180 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHH
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q 006189 616 MDAMRRRHWEEEVELEKGFDAELTQLMEK 644 (657)
Q Consensus 616 ~~~lkkr~~e~~~~leke~~~~l~~lm~k 644 (657)
+++|-... +++-++|+.+.++
T Consensus 181 i~~la~ea--------qe~he~m~k~~~~ 201 (294)
T COG1340 181 IQELANEA--------QEYHEEMIKLFEE 201 (294)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHH
No 162
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=42.65 E-value=19 Score=29.74 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=7.6
Q ss_pred CCeeeccCCC
Q 006189 249 ARQWHCPACQ 258 (657)
Q Consensus 249 ~~tf~CP~C~ 258 (657)
.-+|+||+|+
T Consensus 42 ~i~y~C~~Cg 51 (54)
T PF10058_consen 42 EIQYRCPYCG 51 (54)
T ss_pred ceEEEcCCCC
Confidence 4588888886
No 163
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.47 E-value=9.2e+02 Score=31.62 Aligned_cols=12 Identities=25% Similarity=0.086 Sum_probs=6.3
Q ss_pred cCchhhhhhccc
Q 006189 268 RGLQPLMTHAKT 279 (657)
Q Consensus 268 ~dl~~LLqHA~g 279 (657)
.|--.++.||+-
T Consensus 1299 ~GA~~~~r~a~~ 1310 (1758)
T KOG0994|consen 1299 LGAFNSTRHAYE 1310 (1758)
T ss_pred hhHHHHHHHHHH
Confidence 334455666664
No 164
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=42.40 E-value=40 Score=31.13 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 491 HSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 491 ~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.+-++=....+...+|+-+++= |.|++.+| +|||.||
T Consensus 62 ~lhevmiA~~kA~lslq~~vqV------RNK~veAY-qEImrMq 98 (99)
T PRK01699 62 ETHDVLIQQKKAESQMKTAALV------RDNLIENY-KSLINMQ 98 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHhCC
Confidence 4445555555677888888887 99999999 7899887
No 165
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=42.34 E-value=4.5e+02 Score=33.40 Aligned_cols=9 Identities=0% Similarity=-0.005 Sum_probs=3.9
Q ss_pred CeeecCCeE
Q 006189 326 HEIVWPPMV 334 (657)
Q Consensus 326 eliVWPWmG 334 (657)
+++.+||+.
T Consensus 291 QlL~h~~ik 299 (1021)
T PTZ00266 291 QCLGYQIIK 299 (1021)
T ss_pred HHhccHHHh
Confidence 344445543
No 166
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=6.4e+02 Score=29.64 Aligned_cols=10 Identities=50% Similarity=0.584 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 006189 597 EMEEFVAARD 606 (657)
Q Consensus 597 e~e~f~ae~~ 606 (657)
|+|+.++||+
T Consensus 208 E~erae~Ere 217 (630)
T KOG0742|consen 208 EMERAEAERE 217 (630)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 167
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=41.96 E-value=7.6e+02 Score=30.53 Aligned_cols=17 Identities=12% Similarity=-0.212 Sum_probs=11.1
Q ss_pred EeC-CCccchHHHHHHHH
Q 006189 385 IFE-SSAGGYLEAERLHK 401 (657)
Q Consensus 385 ~F~-~dwsGf~nA~rLek 401 (657)
.|. +.+.+|.....|-|
T Consensus 269 ~~~~k~le~~~s~~~~mK 286 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMK 286 (775)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 344 56777777777765
No 168
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.86 E-value=1.6e+02 Score=27.56 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Q 006189 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVK 517 (657)
Q Consensus 486 e~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r 517 (657)
..-.+++..|-..+.++...+..++|||..||
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555555554433
No 169
>PLN03120 nucleic acid binding protein; Provisional
Probab=41.46 E-value=59 Score=34.78 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=41.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHK 401 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLek 401 (657)
.+.|-|++.. .+-.+|++.|+.|+.+. +....+. .++|++.|.|... .+...|+.|..
T Consensus 6 tVfVgNLs~~---------tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSLK---------ATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 4678888653 35788999999998864 5544333 4689999999654 77788886543
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.10 E-value=2.9e+02 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEK 505 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~s 505 (657)
..+..+..|..++.......+.|+..+..++..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344446667777777777777777766655433
No 171
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.95 E-value=9.5e+02 Score=31.36 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.6
Q ss_pred Ceeecc
Q 006189 250 RQWHCP 255 (657)
Q Consensus 250 ~tf~CP 255 (657)
..|.-|
T Consensus 298 ~~l~FP 303 (1317)
T KOG0612|consen 298 ESLSFP 303 (1317)
T ss_pred hhcCCC
Confidence 344444
No 172
>PRK13401 30S ribosomal protein S18; Provisional
Probab=40.52 E-value=38 Score=30.49 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=27.8
Q ss_pred eeccCCCCCCCccccccCchhhhhhccccC--------chhhhhHHHHHHHHHH
Q 006189 252 WHCPACQGGPGAIDWYRGLQPLMTHAKTKG--------SKRVKLHRELAELLDE 297 (657)
Q Consensus 252 f~CP~C~gkkk~~D~Y~dl~~LLqHA~gvG--------ak~ka~HrALa~lLe~ 297 (657)
=.||||..+-..+| |+|..-|-+--+..| ---...||.|++-++.
T Consensus 14 k~c~~~~~~~~~iD-YKnv~lL~~Fis~~GkIlpRR~TGl~~k~QR~l~~AIKr 66 (82)
T PRK13401 14 KKNLLDSLGIESVD-YKDTALLRTFISDRGKIRSRRVTGLTVQQQRQVATAIKN 66 (82)
T ss_pred CCCCcccCCCCcCC-ccCHHHHHHhcCCCccCcCcccCCcCHHHHHHHHHHHHH
Confidence 35999987655579 996665544444444 1233566777666664
No 173
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=40.12 E-value=9.5 Score=46.13 Aligned_cols=6 Identities=0% Similarity=-0.202 Sum_probs=0.0
Q ss_pred HHhccc
Q 006189 235 ESLESL 240 (657)
Q Consensus 235 ~~Lk~g 240 (657)
..++.|
T Consensus 716 TLVNqG 721 (787)
T PF03115_consen 716 TLVNQG 721 (787)
T ss_dssp ------
T ss_pred HHHHcC
Confidence 344444
No 174
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=39.87 E-value=16 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.043 Sum_probs=17.4
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhccccCchhhhhHHH
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRE 290 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~gvGak~ka~HrA 290 (657)
|....-.||.+.+- -|-|--+- =|||..+|-+.+|+-
T Consensus 119 p~~~vfTP~vpt~d----~~dGRGDS--vaYglRsKsk~f~~s 155 (287)
T smart00017 119 PATDVFTPFVPTVD----TNDGRGDS--VAYGLRSKSKKFRVS 155 (287)
T ss_pred cccceeccccccCC----CCCCCccc--ceehhhhcccccccc
Confidence 34555667777531 12111111 245555566666554
No 175
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.80 E-value=6.7e+02 Score=29.21 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHh--HHHHHHHH
Q 006189 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN--KEEMDFQE 535 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~n--eE~~kmQ~ 535 (657)
+.-++...++..++|+-.-++.-..-.++|.| ..+|.|.|+ ||+.+-|+
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqE------nlqLvhR~h~LEEq~reqE 270 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQE------NLQLVHRYHMLEEQRREQE 270 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHH------HHHHHHHHHHHHHHHHhhh
Confidence 44566666777778887666666666677777 445555554 34444443
No 176
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.43 E-value=1.3e+02 Score=27.19 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIV 516 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~ 516 (657)
..+..-+.|+..+.....+...||..+.+++..|..+||.++-|
T Consensus 43 ~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~v 86 (89)
T PF13747_consen 43 RLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAV 86 (89)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677889999999999999999999999999999996554
No 177
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=39.35 E-value=4.1e+02 Score=26.70 Aligned_cols=56 Identities=25% Similarity=0.194 Sum_probs=28.5
Q ss_pred hcCCCCChhhhHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhh
Q 006189 570 SIANPKNTEDYKLRAEEIAKFIT------------VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEK 632 (657)
Q Consensus 570 ~n~~~~~~e~~~~r~e~~~kf~~------------~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~lek 632 (657)
..++| .|..++.|.|-|+ ||.||.|=-++ -+-..+-.+.|+.|-.+.||.--+-|+
T Consensus 77 ~l~dP-----~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykea--lea~nEknkeK~~Lv~~L~eLv~eSE~ 144 (159)
T PF04949_consen 77 VLADP-----MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEA--LEAFNEKNKEKAQLVTRLMELVSESER 144 (159)
T ss_pred hhccc-----hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 4556777888888 45554442211 111111222566666666665444443
No 178
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=39.34 E-value=3e+02 Score=31.52 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH----------------HHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ----------------EQL 537 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ----------------~~a 537 (657)
..+|-..|+.+|.+.+++...+..=+.....+=.+++-+|+.|...-..--.-.|.+||.- +.-
T Consensus 30 ~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~ 109 (548)
T COG5665 30 REKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELK 109 (548)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhc
Confidence 4567778888888888888877765543333333343343332221111111122233322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 538 FKDQIRIIHEARDEKEENFEKLQQQE 563 (657)
Q Consensus 538 ~~~~~rIi~e~~~~kE~~FEkLqq~e 563 (657)
-++++..|+++.++-+...|...++|
T Consensus 110 k~d~i~~i~~~~~el~~q~e~~ea~e 135 (548)
T COG5665 110 KRDQVLFIHDCLDELQKQLEQYEAQE 135 (548)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888887777776653
No 179
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.93 E-value=9.6e+02 Score=30.79 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=16.9
Q ss_pred eeccccccCCCCccccccc-hhccccc
Q 006189 433 FMALKEDLDVFNQHCHGKT-KQKFEMR 458 (657)
Q Consensus 433 WlAradDyd~~d~~siGe~-rkkgdLK 458 (657)
++|++.++|+... -|.. .++|-|.
T Consensus 632 ~~ak~~~ln~ITl--~GDqvskkG~lT 656 (1200)
T KOG0964|consen 632 RLAKKHELNCITL--SGDQVSKKGVLT 656 (1200)
T ss_pred HHHHhcCCCeEEe--ccceecccCCcc
Confidence 5788888888666 5666 6666655
No 180
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=38.84 E-value=4.8e+02 Score=27.32 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 006189 530 EMDFQEQLFKDQIRIIH--EARDEKEENFEKLQQQ 562 (657)
Q Consensus 530 ~~kmQ~~a~~~~~rIi~--e~~~~kE~~FEkLqq~ 562 (657)
|.||=+-.-+.+..|.. +.-++++.-.|+|+.+
T Consensus 141 m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~e 175 (225)
T KOG4848|consen 141 MKKYPQTLAKYEASLVKQEQEADAKEVRLERLIRE 175 (225)
T ss_pred HHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHH
Confidence 45555544444443332 3345666677777766
No 181
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.73 E-value=8.1e+02 Score=29.87 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIVS 503 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~s 503 (657)
.+..|.+......+.++.||.++.+..
T Consensus 475 Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 475 KLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777887777554
No 182
>PRK02224 chromosome segregation protein; Provisional
Probab=38.65 E-value=7.9e+02 Score=29.76 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHH
Q 006189 457 MRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQ 536 (657)
Q Consensus 457 LKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~ 536 (657)
|+.+..-..+-..++++..+.+..|..+++..+..+++++..+..+...-........-+............++..++..
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~ 287 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRER 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHH
Q 006189 537 LFKDQ-------------------IRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKE 597 (657)
Q Consensus 537 a~~~~-------------------~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke 597 (657)
..+-. .....+....+.+.++....+.+....+.........+.....+.-.+-...+..+
T Consensus 288 ~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~ 367 (880)
T PRK02224 288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE 367 (880)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhh------hhhHHHHHHHHHHh
Q 006189 598 MEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELE------KGFDAELTQLMEKY 645 (657)
Q Consensus 598 ~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~le------ke~~~~l~~lm~k~ 645 (657)
...-..+....++.-+..+..+....-+.+-.|+ .++...|..|-+.+
T Consensus 368 l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~ 421 (880)
T PRK02224 368 LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
No 183
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=38.64 E-value=43 Score=29.80 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=26.5
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcc-ccC---c-----hhhhhHHHHHHHHH
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK-TKG---S-----KRVKLHRELAELLD 296 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~-gvG---a-----k~ka~HrALa~lLe 296 (657)
+.-.||+|..+-..+| |+|.. ||++=. ..| . --...||.|++-++
T Consensus 13 r~k~c~~c~~~~~~iD-YKnv~-lL~~Fis~~GkIlprriTG~~~k~Qr~l~~aIk 66 (79)
T PRK00391 13 RKKVCRFCAEKIEYID-YKDVE-LLKKFISERGKILPRRITGTSAKHQRQLATAIK 66 (79)
T ss_pred CCCCCcccCCCCCcCC-ccCHH-HHHHhcCCCceEcCcccCCcCHHHHHHHHHHHH
Confidence 4446999987755589 99654 555533 334 1 22355666665555
No 184
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.46 E-value=4e+02 Score=29.18 Aligned_cols=91 Identities=11% Similarity=0.087 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 006189 532 DFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREK-VKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIK 610 (657)
Q Consensus 532 kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek-~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~ 610 (657)
++-..|.+---..+++...+=+-.+|+|.|--... +.+......+......+++=+.-|.-.++ -.+|+.|.+.-.+
T Consensus 27 ~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v--~~eYe~E~~aAk~ 104 (291)
T KOG4466|consen 27 NLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERV--EREYECEIKAAKK 104 (291)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33333444334445544445555666666531111 12222333444455555666666776776 6678999988888
Q ss_pred HHhHhHHHHHHHhH
Q 006189 611 FHGEKMDAMRRRHW 624 (657)
Q Consensus 611 ~h~~k~~~lkkr~~ 624 (657)
+|+.++.-||-.-.
T Consensus 105 e~E~~~~lLke~l~ 118 (291)
T KOG4466|consen 105 EYESKKKLLKENLI 118 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888875433
No 185
>PHA03249 DNA packaging tegument protein UL25; Provisional
Probab=37.92 E-value=5.3e+02 Score=31.05 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
|-..|..+-|.|..-++.|..|..-+- ..|+.++|.
T Consensus 413 DllFLLSl~nMI~~f~raLr~LR~wI~---~qLn~L~E~ 448 (653)
T PHA03249 413 DLAFLVGVELMLVHFERTIRVLRCYIQ---HQLQNLSEL 448 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444566777777777776666655432 235555554
No 186
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.77 E-value=3.4e+02 Score=32.30 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=51.9
Q ss_pred hhchhhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHH------HHHHH
Q 006189 469 RQMSEDNQQLIYLKN-RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQ------LFKDQ 541 (657)
Q Consensus 469 Rqm~k~nqlv~~L~n-qIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~------a~~~~ 541 (657)
|+|..+|+.|+||+. +++++.+.++.||+.-..- ..|- +.-+|...+|++.--++ +...-
T Consensus 470 r~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrre-----d~~~--------d~sqhlq~eel~~alektkQel~~tkar 536 (654)
T KOG4809|consen 470 RHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRRE-----DSMA--------DNSQHLQIEELMNALEKTKQELDATKAR 536 (654)
T ss_pred chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHH-----hhhc--------chHHHHHHHHHHHHHHHHhhChhhhhhH
Confidence 677778999999887 6777777777776543221 0111 11222223333332222 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 542 IRIIHEARDEKEENFEKLQQQEREKV 567 (657)
Q Consensus 542 ~rIi~e~~~~kE~~FEkLqq~erek~ 567 (657)
..|++....+||--++.|.++.|+.+
T Consensus 537 l~stqqslaEke~HL~nLr~errk~L 562 (654)
T KOG4809|consen 537 LASTQQSLAEKEAHLANLRIERRKQL 562 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777889999999999866665
No 187
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.76 E-value=9.9e+02 Score=30.65 Aligned_cols=34 Identities=9% Similarity=0.244 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLR 507 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~ 507 (657)
....+.-+..+|.++.+.|.+++-+|+.+...=.
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~ 359 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEK 359 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHH
Confidence 3455666677778888888888888876544433
No 188
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.33 E-value=4.4e+02 Score=26.68 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
++....+.++++..++.++.++.+..++...|..+...
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666667777777777777777777666666665443
No 189
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=37.31 E-value=7.3e+02 Score=28.98 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006189 539 KDQIRIIHEARDEKEENFEKLQQ 561 (657)
Q Consensus 539 ~~~~rIi~e~~~~kE~~FEkLqq 561 (657)
+.++..+.+.+..-...|+.|-.
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 190
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=36.92 E-value=1.1e+02 Score=35.02 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=33.2
Q ss_pred ccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006189 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRET 509 (657)
Q Consensus 456 dLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~ 509 (657)
|+.++.++++...- +.---|..|+.+-..-|+|+|-|++.|..+++.|.+.
T Consensus 108 Di~~~l~gvnSGLv---rAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErr 158 (558)
T PF15358_consen 108 DITELLEGVNSGLV---RAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERR 158 (558)
T ss_pred cHHHHHhhhcccce---ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 45555566665554 2333456777777777778888888887777777553
No 191
>PLN03121 nucleic acid binding protein; Provisional
Probab=36.75 E-value=68 Score=34.09 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=41.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLH 400 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLe 400 (657)
|++.|-|++..- +-..|++.|+.|+.+.-..+....+..|++.|.|..- .+...|+.|.
T Consensus 6 ~TV~V~NLS~~t---------TE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~-~aaetAllLn 64 (243)
T PLN03121 6 YTAEVTNLSPKA---------TEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDA-YALETAVLLS 64 (243)
T ss_pred eEEEEecCCCCC---------CHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCH-HHHHHHHhcC
Confidence 788999986533 4678999999998875444444456678999999753 3446666543
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.74 E-value=5.1e+02 Score=28.20 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 006189 478 LIYLKNRVV 486 (657)
Q Consensus 478 v~~L~nqIe 486 (657)
+..|..+++
T Consensus 11 ~~~l~~~~~ 19 (314)
T PF04111_consen 11 LEQLDKQLE 19 (314)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 193
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.59 E-value=9.3e+02 Score=29.95 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=41.2
Q ss_pred cCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 006189 571 IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 571 n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~ 643 (657)
|++.++.+ +.+.|..|-.--.|-+ .+||+---+.|+.+|--|+-+|-+-..+|.+=-.+.-..|+|
T Consensus 1058 n~~~s~ae----~rekIkqF~~QEekRq---k~er~~q~qKhenqmrdl~~qce~ni~EL~qlQNEKchlLvE 1123 (1187)
T KOG0579|consen 1058 NANMSNAE----MREKIKQFDEQEEKRQ---KAEREDQDQKHENQMRDLKEQCEENIIELDQLQNEKCHLLVE 1123 (1187)
T ss_pred cCCCCcHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 4456666655333333 488888888888888888888877777776544444444444
No 194
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.20 E-value=2.5e+02 Score=24.44 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Q 006189 460 YHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENR 514 (657)
Q Consensus 460 isEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~ 514 (657)
|..++.|+.+ -.+....+.+.|.+...+.+++|..+..+...+.....+..
T Consensus 14 Ia~L~eEGek----LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 14 IAQLMEEGEK----LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 44455566777788888888888888887777777666633
No 195
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=36.18 E-value=49 Score=26.99 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=13.5
Q ss_pred HHHHHhHhHHHHHHHhHHHHHHhh
Q 006189 608 LIKFHGEKMDAMRRRHWEEEVELE 631 (657)
Q Consensus 608 L~~~h~~k~~~lkkr~~e~~~~le 631 (657)
|++.|++.+..|+|+|.-++..|+
T Consensus 23 l~KKq~KEl~~lkKKh~Ke~~~mQ 46 (47)
T PF06631_consen 23 LLKKQQKELEELKKKHQKERSSMQ 46 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555556666655555443
No 196
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=36.10 E-value=80 Score=37.82 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=29.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 006189 583 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR 621 (657)
Q Consensus 583 r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk 621 (657)
.+||..|-+.....+|. ||-+||.++|.++++++|+
T Consensus 361 ~aeeF~kRV~~~ia~~~---AEIekmK~~Hak~m~k~k~ 396 (669)
T PF08549_consen 361 KAEEFRKRVAKKIADMN---AEIEKMKARHAKRMAKFKR 396 (669)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 56777777776666666 9999999999999999995
No 197
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=35.06 E-value=75 Score=33.38 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
+.|-|+|.. .+..+|++.|+.|+++ .|+.+..+. | ++|++.|+|...
T Consensus 6 l~V~nLp~~---------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 6 LIVNYLPQT---------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEeCCCCC---------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 567787653 3578899999999997 577777653 4 589999999764
No 198
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.70 E-value=1.1e+03 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 006189 578 EDYKLRAEEIAKFITVQDKEMEEFVAA 604 (657)
Q Consensus 578 e~~~~r~e~~~kf~~~Q~ke~e~f~ae 604 (657)
.+.+.|+|.+++++.-=.++++.+...
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~ 829 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKD 829 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHH
Confidence 777889999999998544566655443
No 199
>smart00360 RRM RNA recognition motif.
Probab=34.36 E-value=70 Score=23.92 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred cChHHHHHHhhccCcc-eeeeccCC--CCCcceEEEEeCC
Q 006189 352 MGNQELLEYFILYAAV-RARHSYGP--QGHRGMSVLIFES 388 (657)
Q Consensus 352 ~s~~eL~d~lsgF~p~-kv~~l~g~--~GH~G~aVV~F~~ 388 (657)
.+...|++.|..|+++ .++....+ .-++|++.|.|..
T Consensus 8 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~ 47 (71)
T smart00360 8 VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFES 47 (71)
T ss_pred cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCC
Confidence 4678899999999876 45555543 3468999999964
No 200
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=34.23 E-value=8.8e+02 Score=29.00 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 482 KNRVVKEQRHSKALEATFSIVSEKLRET--MEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKL 559 (657)
Q Consensus 482 ~nqIe~knk~lqeLE~k~~e~s~sL~r~--mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkL 559 (657)
+++-..+|-....|=.++.++..+..+. .++|.++-.-+++++.- .+..-|..||+-..+..++|-..-|+-
T Consensus 156 a~~~~~~n~e~~~l~~~~~e~~~~~~~r~~e~Q~qv~qsl~~el~~i------~~~~q~~eqi~~~~~~~e~kr~Eaerk 229 (591)
T KOG2412|consen 156 ANQEIETNAENIRLVEKLSETRKEVKRRLLEEQNQVLQSLDTELQAI------QREKQRKEQIRERKERSEEKREEAERK 229 (591)
T ss_pred HHHHHHhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhhHHH
Q ss_pred HHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHH
Q 006189 560 QQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVE 629 (657)
Q Consensus 560 qq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~ 629 (657)
+++..+..+| +++-..+..+-.+.-.++.| .+|..+=+++..++.+++.+.|-++..+
T Consensus 230 ~~~~qEe~Rq-------k~d~~~~~~eqekiR~~eek-----qeee~ke~e~~~~k~~q~~~~~eek~a~ 287 (591)
T KOG2412|consen 230 RRAHQEELRQ-------KEDEEAELQEQEKIRAEEEK-----QEEERKEAEEQAEKEVQDPKAHEEKLAE 287 (591)
T ss_pred HHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCchhccccccc
No 201
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.06 E-value=7.9e+02 Score=28.42 Aligned_cols=35 Identities=9% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 517 KQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDE 551 (657)
Q Consensus 517 r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~ 551 (657)
+..+++...|+.+...+++.+.+....-+.-+..+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~ 341 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELRQELKRQEEA 341 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666666555554444433333
No 202
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=33.79 E-value=16 Score=42.54 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=59.5
Q ss_pred cccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 455 FEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 455 gdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
.|+||-+.-+.+-.. .|.+.|++.|++.+.+...++++..+|..+-+. |.....-.-+||.|..-+.
T Consensus 364 AD~kSTQ~aid~it~----------kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~---v~d~~~d~wsynaELlVll 430 (550)
T PF00509_consen 364 ADLKSTQKAIDQITK----------KVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKK---VDDKIADVWSYNAELLVLL 430 (550)
T ss_dssp EEHHHHHHHHHHHHH----------HHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHH----------HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh---hhccchhhhcccHHHHHHh
Confidence 567776655433333 344555666666666666666666555544333 1223444778988876543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006189 535 EQLFKDQIRIIHEARDEKEENFEKLQQQEREKVK 568 (657)
Q Consensus 535 ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~ 568 (657)
+ -++.|+.+-..--.+|||++...|+.+.
T Consensus 431 e-----N~~tld~~Ds~~~~L~ekvk~qL~~na~ 459 (550)
T PF00509_consen 431 E-----NQRTLDLHDSNVNNLYEKVKRQLRENAE 459 (550)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHGTGEE
T ss_pred c-----cccchhhhHHHHHHHHHHHHHHHhccch
Confidence 3 4577777777888899999887777763
No 203
>PTZ00121 MAEBL; Provisional
Probab=33.33 E-value=1.4e+03 Score=30.96 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=23.5
Q ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 519 RTKMQHEQNKEEMDFQEQLFKDQIRIIHEARD 550 (657)
Q Consensus 519 k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~ 550 (657)
|....+...+|.+..++..+....++..+.+.
T Consensus 1206 RRlEE~RraEEARraEEErR~EE~RraEEaRK 1237 (2084)
T PTZ00121 1206 RKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677778888888888888888776654
No 204
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=32.83 E-value=5.6e+02 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q 006189 599 EEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLM 642 (657)
Q Consensus 599 e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm 642 (657)
+.+.-..++|+..|.+-...|...--....+|++++++.+..|=
T Consensus 119 ~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~ 162 (185)
T PF08703_consen 119 EKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLP 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455677888888887777766666666677777777766653
No 205
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.52 E-value=5.9e+02 Score=28.13 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=9.4
Q ss_pred HhHHHHHHhHHHHHHH
Q 006189 519 RTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 519 k~kl~~~~neE~~kmQ 534 (657)
|.++..-||+.+.++-
T Consensus 75 Rkrv~~i~Nk~e~dF~ 90 (309)
T TIGR00570 75 RKRVLKIYNKREEDFP 90 (309)
T ss_pred HHHHHHHHccchhccC
Confidence 5556666666655443
No 206
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.25 E-value=1e+03 Score=29.28 Aligned_cols=11 Identities=18% Similarity=0.130 Sum_probs=6.3
Q ss_pred cccCCCCCCCC
Q 006189 41 ADISLDSAQDD 51 (657)
Q Consensus 41 ~~~~~~~~~~~ 51 (657)
.+|+|..|++|
T Consensus 25 ~gi~lI~G~nG 35 (908)
T COG0419 25 SGIFLIVGPNG 35 (908)
T ss_pred CCeEEEECCCC
Confidence 45666666644
No 207
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.21 E-value=8.8e+02 Score=28.37 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=9.0
Q ss_pred HHHhHHHHHHhhhhhHHHH
Q 006189 620 RRRHWEEEVELEKGFDAEL 638 (657)
Q Consensus 620 kkr~~e~~~~leke~~~~l 638 (657)
.+||..---+..+.|..+.
T Consensus 509 ~nRfr~~~~~V~~~f~~Ae 527 (569)
T PRK04778 509 ANRYRSDNEEVAEALNEAE 527 (569)
T ss_pred HhccCCCCHHHHHHHHHHH
Confidence 5555544444444444443
No 208
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.74 E-value=3.1e+02 Score=28.31 Aligned_cols=96 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred eeeccccccCCCCccccccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006189 432 GFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (657)
Q Consensus 432 GWlAradDyd~~d~~siGe~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m 510 (657)
||| +.+|=+..++..=+. ...-+|..+.+-..+-.. .-++..+-|.++++.-++...+|+..+.++...|..+.
T Consensus 78 GWV--~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~---~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 78 AWI--PLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDN---TWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred EeE--EHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHhHHHHHHhHHHHHHHHHHH
Q 006189 511 EENRIVKQRTKMQHEQNKEEMDFQEQLF 538 (657)
Q Consensus 511 EEn~i~r~k~kl~~~~neE~~kmQ~~a~ 538 (657)
.+ .+.+...-.......+...|
T Consensus 153 ~~------~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 153 KK------VDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HH------HHHHHHHHHHHHHHHHHHHH
No 209
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=31.65 E-value=3.8e+02 Score=25.19 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~k 521 (657)
-.-+..-|+.-|...+.....|.+.+......|++++.|+++|.-|..
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888889999999999999999999776655443
No 210
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.65 E-value=8.6e+02 Score=28.07 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m 510 (657)
...+.++-+...|....+.++.||..+......+..+.
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~ 79 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLE 79 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555544444444333
No 211
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=31.52 E-value=2.7e+02 Score=22.27 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENR 514 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~ 514 (657)
.-..+...+...|...+.-+..|+.....+...|.+.+.+..
T Consensus 15 ~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 15 ELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888889999999999999999999999999988844
No 212
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=31.33 E-value=39 Score=29.99 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=19.6
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhccc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~g 279 (657)
+.=.||||..+-..+| |+|+ +||.+-.+
T Consensus 14 rrk~c~~~~~~~~~iD-YKd~-~~L~rfis 41 (75)
T COG0238 14 RRKVCRFTAEGIEEID-YKDV-ELLKRFIS 41 (75)
T ss_pred cccccccccccCCccC-ccCH-HHHHHHhc
Confidence 4457999998655689 8855 56666554
No 213
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=31.33 E-value=16 Score=42.13 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHH
Q 006189 597 EMEEFVAARDRLIKFHGEKMDAMR 620 (657)
Q Consensus 597 e~e~f~ae~~kL~~~h~~k~~~lk 620 (657)
+|-.....+.+||+++++++++|.
T Consensus 455 ~m~~~~~~kqrii~aQ~~~i~~Ld 478 (495)
T PF12004_consen 455 EMQAVLDHKQRIIDAQEKRIAALD 478 (495)
T ss_dssp ------------------------
T ss_pred HHhcccccchHHHHHhhhhccccc
Confidence 577777888999999999988875
No 214
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=31.29 E-value=8.8e+02 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=18.9
Q ss_pred chhccccccHHHHHHHHHhhchhhhHHHHHHHH
Q 006189 451 TKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKN 483 (657)
Q Consensus 451 ~rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~n 483 (657)
++++.-..|..|.|.|.+. =.+++|+-|..
T Consensus 109 s~Le~~~~~~~d~v~Ed~~---~~Dq~idiL~~ 138 (429)
T PF12297_consen 109 SKLEPSQFTSADGVSEDAA---MNDQMIDILSS 138 (429)
T ss_pred CCCCccccchhhhhhhhhh---cccchhhhhhh
Confidence 3555666777777777766 55555655553
No 215
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.15 E-value=2.5e+02 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHH
Q 006189 487 KEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQ 536 (657)
Q Consensus 487 ~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~ 536 (657)
...++..+|+..+..+..++..+-+|+..|+.-.+.++.|...+|.....
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44467888999999999999999999999999999999998888765443
No 216
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.48 E-value=1.6e+03 Score=30.76 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIV 502 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~ 502 (657)
+|..|++.+..+.+.++.|+...+..
T Consensus 1347 qld~l~~e~~~lt~~~~ql~~~~~rL 1372 (1822)
T KOG4674|consen 1347 QLDELNNEKANLTKELEQLEDLKTRL 1372 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 217
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=30.39 E-value=9.7e+02 Score=28.29 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006189 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVK 568 (657)
Q Consensus 489 nk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~ 568 (657)
.+|.+++..+++..-+++.+.|.- -.+ ...-.+..+++-+++.+-..+|+.+.+..-..+---||.|.+.+
T Consensus 107 ~khn~~I~~k~g~~L~~v~~~~~~------~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~R-- 177 (508)
T PF00901_consen 107 EKHNKKIIEKFGNDLEKVYKFMKG------QEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRER-- 177 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 455556666666554455444432 111 11122445677788888888888765544444444444443222
Q ss_pred hhcCCCCChhhhHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhH
Q 006189 569 QSIANPKNTEDYKLRAEEI-AKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHW 624 (657)
Q Consensus 569 ~~n~~~~~~e~~~~r~e~~-~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~ 624 (657)
+.+-+.+++++ +||-.++. -+| .||+-|+++-=+.++-|--...
T Consensus 178 --------t~dE~~mv~~yr~ki~aL~~-aIe---~Er~~m~EEAiqe~~dmsaeVl 222 (508)
T PF00901_consen 178 --------TQDERKMVEEYRQKIDALKN-AIE---VEREGMQEEAIQEIADMSAEVL 222 (508)
T ss_pred --------cHHHHHHHHHHHHHHHHHHH-HHH---HHHhhHHHHHHHHHhcccHHHH
Confidence 22233355554 34433443 333 7777777666555555544433
No 218
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=30.00 E-value=24 Score=24.36 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=17.6
Q ss_pred eeeccCCCCCCCccccccCchhhhhhccc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~g 279 (657)
+|.|++|.. . |.+-..|.+|=.+
T Consensus 1 q~~C~~C~k-----~-f~~~~~~~~H~~s 23 (27)
T PF12171_consen 1 QFYCDACDK-----Y-FSSENQLKQHMKS 23 (27)
T ss_dssp -CBBTTTTB-----B-BSSHHHHHCCTTS
T ss_pred CCCcccCCC-----C-cCCHHHHHHHHcc
Confidence 589999962 3 7888899999655
No 219
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.82 E-value=7.2e+02 Score=27.10 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006189 466 NQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS 503 (657)
Q Consensus 466 E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s 503 (657)
.++..+.+++..|..|+.++..++..|.+-.....++-
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll 42 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELL 42 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667888888888888777766665554444433
No 220
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=29.81 E-value=4.6e+02 Score=24.54 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhh
Q 006189 527 NKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDY 580 (657)
Q Consensus 527 neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~ 580 (657)
-+||++-=..+-+..+..|..+...-+..|..||-++.-.. |+ .|.|+...
T Consensus 5 ~eEI~rdY~n~s~~v~E~l~~~~~~Lkq~f~~~qS~~~~mT--C~-~PeNI~~~ 55 (100)
T PF11291_consen 5 KEEIRRDYPNFSEEVFEKLNRCSVKLKQYFDKLQSKKENMT--CN-RPENISEK 55 (100)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHhcccCcc--cC-CCCCCCHH
Confidence 35566666666677777778888888899999987733332 22 35555444
No 221
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=29.79 E-value=3.3e+02 Score=29.86 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhHhHHH---HHHHhHHHHHHhhhhhH
Q 006189 602 VAARDRLIKFHGEKMDA---MRRRHWEEEVELEKGFD 635 (657)
Q Consensus 602 ~ae~~kL~~~h~~k~~~---lkkr~~e~~~~leke~~ 635 (657)
.+.++.||..-++..+. .+.+..+.++++||+-.
T Consensus 73 k~kqeniVreRekqlak~~~~k~q~k~~e~~~eKe~K 109 (331)
T KOG2894|consen 73 KAKQENIVREREKQLAKKKLSKTQQKKRELAREKEEK 109 (331)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 36666666655554443 45566666666666543
No 222
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=29.57 E-value=2.1e+02 Score=33.81 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=20.3
Q ss_pred hHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 615 KMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 615 k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
+-++++|++.-+.--|++++...|...-+.|
T Consensus 381 kEEk~rk~i~k~lPkle~~L~~~l~~wE~e~ 411 (619)
T PF03999_consen 381 KEEKERKRIQKKLPKLEEELKKKLEEWEEEH 411 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 3456666666666677777777766666555
No 223
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=29.49 E-value=99 Score=34.94 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=44.7
Q ss_pred eecCCe--EEEEecccccCCCCcccccChHHHHHHhhccCc---ceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHH
Q 006189 328 IVWPPM--VIIMNTRLDKDENDKWTGMGNQELLEYFILYAA---VRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKH 402 (657)
Q Consensus 328 iVWPWm--GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p---~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLekh 402 (657)
.++||. +.|-|++.. .+.+.|++.|+.|+. ..++.+-...+.+|+++|+|..--.- ..|+..-++
T Consensus 389 ~~~~ps~~L~v~NLp~~---------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS---------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCCC---------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 467884 456688653 357789999998875 34555444555689999999984433 355554444
Q ss_pred Hhhc
Q 006189 403 FAEQ 406 (657)
Q Consensus 403 Fe~q 406 (657)
+...
T Consensus 459 ~~l~ 462 (481)
T TIGR01649 459 HQLN 462 (481)
T ss_pred CccC
Confidence 4443
No 224
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=29.41 E-value=6.7e+02 Score=26.09 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=44.0
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHhHHHHHHhHHHHHHhHHHHHHH
Q 006189 470 QMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRE-TMEENRIVKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 470 qm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r-~mEEn~i~r~k~kl~~~~neE~~kmQ 534 (657)
+|+..++.|..|...|...+++.+..|.+|....+.|+. .+.| |++-.++-..|.+=.-|.|
T Consensus 13 ~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~E---LkqsKklydnYYkL~~KY~ 75 (196)
T PF15272_consen 13 QLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINE---LKQSKKLYDNYYKLYSKYQ 75 (196)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999888877754 2333 3444455555544443333
No 225
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=29.29 E-value=7.2e+02 Score=26.45 Aligned_cols=70 Identities=16% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhh-HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006189 535 EQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDY-KLRAEEIAKFITVQDKEMEEFVAARD 606 (657)
Q Consensus 535 ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~-~~r~e~~~kf~~~Q~ke~e~f~ae~~ 606 (657)
.+.....++.+.-.-+.|-+.+||-+.+ ..|+++-.-.+-|..++ ....+-|+-+...|. ||+.|+++--
T Consensus 107 ~kyi~a~~Kkyq~E~k~k~dsLeK~~se-LKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~-el~~f~~~~~ 177 (226)
T cd07645 107 VKYMTATLKRYQTEHKNKLDSLEKSQAD-LKKIRRKSQGRRNASKYEHKENEYLETVTSRQS-DIQKFIADGC 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344456666666677888899998876 44554442222222221 123455667777776 8888888543
No 226
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=29.21 E-value=1.2e+02 Score=29.01 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=39.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
.+.|-|++.. .+...|++.|..|.++. +++...+ .| +.|+++|.|... ..-..|+.
T Consensus 36 ~lfVgnL~~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSWG---------TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 3667888642 36788999999998864 5555554 23 589999999965 55555554
No 227
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.16 E-value=8.2e+02 Score=27.07 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 006189 463 MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQI 542 (657)
Q Consensus 463 iv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~ 542 (657)
++.+-++|++..|.+++.|...|+.+....-...+.+.. ++-++.-+.+|-+.+-..|+|...+-..+.+.|.
T Consensus 200 Lv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~-------LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~ 272 (306)
T PF04849_consen 200 LVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS-------LLSQIVDLQQRCKQLAAENEELQQHLQASKESQR 272 (306)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445555566667777777776666665555444443332 2222222333555666666666555555544444
Q ss_pred HH
Q 006189 543 RI 544 (657)
Q Consensus 543 rI 544 (657)
..
T Consensus 273 ~L 274 (306)
T PF04849_consen 273 QL 274 (306)
T ss_pred HH
Confidence 43
No 228
>PRK13400 30S ribosomal protein S18; Provisional
Probab=29.06 E-value=67 Score=31.76 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=18.6
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.-.||||..+...+| |+|..-|-+--+
T Consensus 22 rK~C~~c~~~~~~ID-YKNv~lL~~FIS 48 (147)
T PRK13400 22 RKICSFCAEKVSRID-YKDSAKLARYIS 48 (147)
T ss_pred CCCCCccCCCCCccC-CcCHHHHHHhcC
Confidence 356999987767789 996655444433
No 229
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=28.83 E-value=8.3e+02 Score=29.24 Aligned_cols=118 Identities=20% Similarity=0.216 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHH------HHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEA-----------TFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE------MDFQEQ 536 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~-----------k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~------~kmQ~~ 536 (657)
..++-+.|+.+|.+.|++...+.. ++..-.-.+...||.-++|-+-. -..+|.+|- .+=+++
T Consensus 40 keK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~-KtKa~SkegL~~~~klDPkEk 118 (575)
T KOG2150|consen 40 KEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEM-KTKAFSKEGLSAAEKLDPKEK 118 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHh-hccccchhhccccccCChHHH
Confidence 577888899999888888887754 23333445577788877776533 345676664 345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhh---cC--CCCChhhhHHHHHHHHhhhh
Q 006189 537 LFKDQIRIIHEARDEKEENFEKLQQQ------EREKVKQS---IA--NPKNTEDYKLRAEEIAKFIT 592 (657)
Q Consensus 537 a~~~~~rIi~e~~~~kE~~FEkLqq~------erek~~~~---n~--~~~~~e~~~~r~e~~~kf~~ 592 (657)
...++..-|+.+.++-|...+.++.+ +|-+-.++ ++ ...|.+-..-.++.+|-+|.
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~ 185 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDIT 185 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHH
Confidence 88899999999999999998888874 22222222 11 24455555555666655554
No 230
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=28.71 E-value=6.8e+02 Score=25.96 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH----------hHHHHHHhHHHHHHHHHHHHHHH--HHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR----------TKMQHEQNKEEMDFQEQLFKDQI--RII 545 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k----------~kl~~~~neE~~kmQ~~a~~~~~--rIi 545 (657)
+..|...+.....-.+..+..+.+....|.....+...+|.+ ..+...+..++.++......... ..+
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~ 103 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQL 103 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 556666666666666677777777777776666665555554 23344555556555554444322 444
Q ss_pred HHHHHHHHHHHHHHH
Q 006189 546 HEARDEKEENFEKLQ 560 (657)
Q Consensus 546 ~e~~~~kE~~FEkLq 560 (657)
....+..+..|+-|-
T Consensus 104 ~~~~~~~~~~l~~L~ 118 (296)
T PF13949_consen 104 RSKLESIEENLELLS 118 (296)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 444445555555554
No 231
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=28.69 E-value=44 Score=26.03 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=8.8
Q ss_pred CeeeccCCCCC
Q 006189 250 RQWHCPACQGG 260 (657)
Q Consensus 250 ~tf~CP~C~gk 260 (657)
..++||+|++.
T Consensus 20 ~~~~Cp~CG~~ 30 (46)
T PRK00398 20 TGVRCPYCGYR 30 (46)
T ss_pred CceECCCCCCe
Confidence 47999999853
No 232
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.50 E-value=1.5e+03 Score=29.90 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=5.1
Q ss_pred ChHHHHHHhh
Q 006189 353 GNQELLEYFI 362 (657)
Q Consensus 353 s~~eL~d~ls 362 (657)
.+++++..|+
T Consensus 1351 ~n~~~L~el~ 1360 (1758)
T KOG0994|consen 1351 ENSRLLVELR 1360 (1758)
T ss_pred cccHHHHHHH
Confidence 4555555554
No 233
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.34 E-value=35 Score=42.26 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=8.1
Q ss_pred hHHHHHHHHhccc
Q 006189 228 RWFKKFFESLESL 240 (657)
Q Consensus 228 k~f~K~y~~Lk~g 240 (657)
+.|..++..|.++
T Consensus 962 ~~f~~~i~~lq~~ 974 (1010)
T KOG1991|consen 962 QLFKEAITNLQSS 974 (1010)
T ss_pred HHHHHHHHhhhcc
Confidence 5566666666655
No 234
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=28.28 E-value=88 Score=34.82 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=43.7
Q ss_pred EEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCccchHHHHHHH
Q 006189 335 IIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAERLH 400 (657)
Q Consensus 335 II~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLe 400 (657)
-|-|||-..-+ ..|+..|-.|+++ .|-+++|.+|.-||..|.|.+..+.=+-=..||
T Consensus 100 hVSNIPFrFRd---------pDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LH 157 (376)
T KOG0125|consen 100 HVSNIPFRFRD---------PDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELH 157 (376)
T ss_pred EeecCCccccC---------ccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhh
Confidence 36788776544 3488889999996 899999999999999999999875444433443
No 235
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.80 E-value=5.7e+02 Score=28.20 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHhHHHH
Q 006189 587 IAKFITVQDKEMEEFVAARDRLIKFHGE-KMDAMRRRHWEEE 627 (657)
Q Consensus 587 ~~kf~~~Q~ke~e~f~ae~~kL~~~h~~-k~~~lkkr~~e~~ 627 (657)
|+.-..-|.-+++.++..++ +.+..+. ....+.++..|++
T Consensus 131 I~~n~~R~~~~~e~~e~~l~-~ekr~~~~~r~~~~r~~~ee~ 171 (300)
T KOG3800|consen 131 IQNNKERVHREQEDLEQRLE-LEKRQKEFRREELEREAQEEE 171 (300)
T ss_pred ccCChhhcchHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHH
Confidence 33444455666776655333 3333333 3334444444433
No 236
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=1.3e+03 Score=29.05 Aligned_cols=148 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 487 KEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREK 566 (657)
Q Consensus 487 ~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek 566 (657)
.+.+.+.+|+....++..+|+..|.. -|-+-.++-.|+.-+-+.+++.++.-=.+.-++-|+.-..-+..+|+.
T Consensus 667 i~~~q~eel~Ke~kElq~rL~~q~Kk------iDh~ERA~R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~ 740 (988)
T KOG2072|consen 667 IKARQIEELEKERKELQSRLQYQEKK------IDHLERAKRLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERES 740 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh------cCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH----HhHHHHHHhhhhhHH
Q 006189 567 VKQS------IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR----RHWEEEVELEKGFDA 636 (657)
Q Consensus 567 ~~~~------n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk----r~~e~~~~leke~~~ 636 (657)
.... =.+.-..=.-.+..+--.-|.+-=.+--+.++|||..|.+...+++.+-|. +|-||+.--+.|.-+
T Consensus 741 ~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ 820 (988)
T KOG2072|consen 741 AVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLEAERNRLAERKRARIEERKQAYYREIEEERARREEEEAN 820 (988)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 006189 637 ELTQ 640 (657)
Q Consensus 637 ~l~~ 640 (657)
++.+
T Consensus 821 ae~~ 824 (988)
T KOG2072|consen 821 AERQ 824 (988)
T ss_pred HHHH
No 237
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.47 E-value=27 Score=39.23 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.7
Q ss_pred eeeccCCCCC
Q 006189 251 QWHCPACQGG 260 (657)
Q Consensus 251 tf~CP~C~gk 260 (657)
+|.|||||..
T Consensus 374 sfKCPYCP~e 383 (394)
T KOG2817|consen 374 SFKCPYCPVE 383 (394)
T ss_pred eeeCCCCCcc
Confidence 6999999964
No 238
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.84 E-value=33 Score=42.46 Aligned_cols=7 Identities=29% Similarity=0.467 Sum_probs=3.7
Q ss_pred chhhhhh
Q 006189 270 LQPLMTH 276 (657)
Q Consensus 270 l~~LLqH 276 (657)
|+.|++|
T Consensus 979 yq~l~~~ 985 (1010)
T KOG1991|consen 979 YQKLIST 985 (1010)
T ss_pred HHHHHhc
Confidence 3455555
No 239
>PHA00616 hypothetical protein
Probab=26.82 E-value=19 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.606 Sum_probs=16.6
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.|.||-|+.. |...+.|..|-.
T Consensus 1 pYqC~~CG~~------F~~~s~l~~H~r 22 (44)
T PHA00616 1 MYQCLRCGGI------FRKKKEVIEHLL 22 (44)
T ss_pred CCccchhhHH------HhhHHHHHHHHH
Confidence 4789999843 555889999954
No 240
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=1.3e+03 Score=28.47 Aligned_cols=139 Identities=19% Similarity=0.132 Sum_probs=0.0
Q ss_pred ccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHh
Q 006189 449 GKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (657)
Q Consensus 449 Ge~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~n 527 (657)
+++ ++..+.-+...+...-...++..+.++.-|++.+......+..||+...-.+........| ++.++..+..+.
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~e---l~~~~~~le~~k 558 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKE---LTTLTQSLEMLK 558 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH---HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH----------HHHHHhhhcCCCCChhhhHHHHHHHH
Q 006189 528 KEEMDFQEQLFKDQIRI---------IHEARDEKEENFEKLQQQ----------EREKVKQSIANPKNTEDYKLRAEEIA 588 (657)
Q Consensus 528 eE~~kmQ~~a~~~~~rI---------i~e~~~~kE~~FEkLqq~----------erek~~~~n~~~~~~e~~~~r~e~~~ 588 (657)
....+.=+.+..-+++. |.....+.+...+.+.++ .+-++.+.....+-..-+....|++.
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk 638 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELK 638 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHH
Q ss_pred hh
Q 006189 589 KF 590 (657)
Q Consensus 589 kf 590 (657)
-|
T Consensus 639 ~y 640 (698)
T KOG0978|consen 639 EY 640 (698)
T ss_pred HH
No 241
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=26.51 E-value=1e+03 Score=27.26 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006189 476 QQLIYLKN-RVVKEQRHSKALEATFS-----IVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEAR 549 (657)
Q Consensus 476 qlv~~L~n-qIe~knk~lqeLE~k~~-----e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~ 549 (657)
+++..|.. |.....+.++-|..-+. -+...+.+-+.. ....|+.+-.+...++...+.+.....
T Consensus 208 ~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~----------l~~l~~~~d~~~~~~~~~lr~~~E~~~ 277 (473)
T PF14643_consen 208 QLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYAS----------LNALNEQIDEYHQQCMEKLRALYEKIC 277 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH----------HHHHH----------hhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 006189 550 DEKEENFEKLQQQ----------EREKV----------KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 609 (657)
Q Consensus 550 ~~kE~~FEkLqq~----------erek~----------~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~ 609 (657)
.+=...++.++++ +-+.+ ..+.......+.-..+.|++++-..-|-...-.|..+.-.|-
T Consensus 278 ~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lw 357 (473)
T PF14643_consen 278 QECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLW 357 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 006189 610 KFHGEKMDAMRRRHWEEEVELEKGFDAELTQL 641 (657)
Q Consensus 610 ~~h~~k~~~lkkr~~e~~~~leke~~~~l~~l 641 (657)
+.|+.+...+...+....-+.-++++++...+
T Consensus 358 d~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~ 389 (473)
T PF14643_consen 358 DEHRKKLSKQEEELEKRLEQCREKHDQENQEK 389 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 242
>PHA02047 phage lambda Rz1-like protein
Probab=26.39 E-value=2.5e+02 Score=26.32 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=39.0
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 006189 463 MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEEN 513 (657)
Q Consensus 463 iv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn 513 (657)
+..+.++ ....+|..+..+|..-+++.++|+.+-+..+..+...+++|
T Consensus 31 ~~h~~a~---~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n 78 (101)
T PHA02047 31 IAHEEAK---RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN 78 (101)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555 56778889999999999999999999888888888888764
No 243
>PF15556 Zwint: ZW10 interactor
Probab=26.13 E-value=8.1e+02 Score=26.00 Aligned_cols=89 Identities=24% Similarity=0.336 Sum_probs=53.5
Q ss_pred eeeeeeccccccCCCCccccccc-hhc--------cccc-cHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 429 QLYGFMALKEDLDVFNQHCHGKT-KQK--------FEMR-SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEAT 498 (657)
Q Consensus 429 ~LYGWlAradDyd~~d~~siGe~-rkk--------gdLK-SisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k 498 (657)
-|-.|||.++=.-.+|+-.--.. |.+ .+|| ||++-|. .|+ --|.-+--++++-++....|++.
T Consensus 34 FLqnFLaqed~~QgldpLaSedtsRqkai~aKeQWKeLKAtYqehVE-aIk------~alt~aL~q~eEaqrK~~qLqeA 106 (252)
T PF15556_consen 34 FLQNFLAQEDTAQGLDPLASEDTSRQKAIEAKEQWKELKATYQEHVE-AIK------SALTQALPQVEEAQRKRTQLQEA 106 (252)
T ss_pred HHHHHHhcCcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677887776666665211111 322 1222 3333332 222 13333445778888888899999
Q ss_pred hhhhHHHHHHHHHHhHHHHHHhHHHH
Q 006189 499 FSIVSEKLRETMEENRIVKQRTKMQH 524 (657)
Q Consensus 499 ~~e~s~sL~r~mEEn~i~r~k~kl~~ 524 (657)
+.....+-+.+||..++.++.=+|++
T Consensus 107 ~eqlqaKKqva~eK~r~AQkqwqlqQ 132 (252)
T PF15556_consen 107 LEQLQAKKQVAMEKLRAAQKQWQLQQ 132 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998989998777666555544
No 244
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.01 E-value=5.9e+02 Score=24.33 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQ 560 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLq 560 (657)
+-..+...+..+..|+..-...+..|-++|.+|.-++...+....-..+...+|.+ + ..+-+-..+|.+.-|+|+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~r-y----~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQR-Y----QTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHhcchHHHHHHHH
Confidence 33444555556666666666677777777777554443333333333333333331 1 222334446777777777
Q ss_pred HH
Q 006189 561 QQ 562 (657)
Q Consensus 561 q~ 562 (657)
..
T Consensus 103 ~D 104 (120)
T PF12325_consen 103 AD 104 (120)
T ss_pred HH
Confidence 54
No 245
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.91 E-value=5.1e+02 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 538 FKDQIRIIHEARDEKEENFEKLQQ 561 (657)
Q Consensus 538 ~~~~~rIi~e~~~~kE~~FEkLqq 561 (657)
.+.|..++..+...|...++.|+|
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455677888888888888888765
No 246
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.84 E-value=1.7e+02 Score=30.48 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 006189 552 KEENFEKLQQQ 562 (657)
Q Consensus 552 kE~~FEkLqq~ 562 (657)
.....+|||++
T Consensus 96 d~~~lkkLq~~ 106 (201)
T COG1422 96 DMKKLKKLQEK 106 (201)
T ss_pred CHHHHHHHHHH
Confidence 34455555555
No 247
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=25.78 E-value=7.5e+02 Score=25.47 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 578 EDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 578 e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
++...|.+.|...+. .||+.|..+|-+= ...+.+.|+++++++-+++-+.|.+.+.+|
T Consensus 142 ~ev~~r~d~IS~~~~---aE~~~F~~eRv~D-------fk~~m~~yLe~qI~fyqqI~~kl~~a~~~~ 199 (199)
T cd07626 142 EEVKRRTDVISYALL---AEINHFHRERVRD-------FKSMMRNYLQQQIEFYQKIAAKLEEALAMY 199 (199)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556777766554 5888888876542 234556999999999999999998887664
No 248
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.71 E-value=7.7e+02 Score=25.63 Aligned_cols=149 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHH
Q 006189 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQL 537 (657)
Q Consensus 458 KSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a 537 (657)
+||+.|+.+.-++-......|..+...-..-..+|..||.+++.+-.+..++-+- ...|-+.+-.+-...
T Consensus 51 k~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v----------i~~~k~NEE~Lkk~~ 120 (207)
T PF05010_consen 51 KTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEV----------IEGYKKNEETLKKCI 120 (207)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHH
Q 006189 538 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMD 617 (657)
Q Consensus 538 ~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~ 617 (657)
-++..+|-.+ +..|+.|+.---+++. .=+++|.....-..-|+-.+.| .-+++
T Consensus 121 ~ey~~~l~~~-----eqry~aLK~hAeekL~-------------~ANeei~~v~~~~~~e~~aLqa---------~lkk~ 173 (207)
T PF05010_consen 121 EEYEERLKKE-----EQRYQALKAHAEEKLE-------------KANEEIAQVRSKHQAELLALQA---------SLKKE 173 (207)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhHHHHHHHHH---------HHHHH
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHH
Q 006189 618 AMRRRHWEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 618 ~lkkr~~e~~~~leke~~~~l~~lm~ 643 (657)
.|+..-.++.|+=..+=.++||.+-+
T Consensus 174 e~~~~SLe~~LeQK~kEn~ELtkICD 199 (207)
T PF05010_consen 174 EMKVQSLEESLEQKTKENEELTKICD 199 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=25.56 E-value=6.2e+02 Score=30.36 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 532 DFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV 567 (657)
Q Consensus 532 kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~ 567 (657)
+|++.-.++++--|.|-+..-++..|+.+|++|.+.
T Consensus 377 k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~ 412 (645)
T KOG0681|consen 377 KLEEEREENLISWLEELREKLEKLLERISQKKRLKQ 412 (645)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333444666666666666666666666655443
No 250
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=25.54 E-value=1.2e+03 Score=27.65 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhh
Q 006189 593 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF 634 (657)
Q Consensus 593 ~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~ 634 (657)
+|..+.++=..| -++|++...|..+|++-+--|+--|..|.
T Consensus 170 L~kE~~~Rt~dE-~~mv~~yr~ki~aL~~aIe~Er~~m~EEA 210 (508)
T PF00901_consen 170 LQKESRERTQDE-RKMVEEYRQKIDALKNAIEVEREGMQEEA 210 (508)
T ss_pred HHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444333333333 35888899999999866555554444443
No 251
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.31 E-value=4e+02 Score=25.20 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHhhchhhh----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHH
Q 006189 456 EMRSYHEMVVNQIRQMSEDN----QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (657)
Q Consensus 456 dLKSisEiv~E~~Rqm~k~n----qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~ 525 (657)
++...-+......+++++.| ..|..++.+|...-..++.|+..|......+..++....--.-+.+|..+
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~ 104 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
No 252
>PRK12705 hypothetical protein; Provisional
Probab=25.20 E-value=1.2e+03 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHHHhcCCcccccc
Q 006189 619 MRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 654 (657)
Q Consensus 619 lkkr~~e~~~~leke~~~~l~~lm~k~~~~~~~~~~ 654 (657)
+++...|...+-+++...=++..|+.|..+.+.+..
T Consensus 163 i~~~e~~~~~~a~~~A~~ii~~aiqr~a~~~~~e~t 198 (508)
T PRK12705 163 VKKIEEEADLEAERKAQNILAQAMQRIASETASDLS 198 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhe
Confidence 333344455667788888899999999988876543
No 253
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.10 E-value=3.3e+02 Score=32.72 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH---HHHHhHhHHHHHHHhHHHHHHhhh------hhHHHHHHHHHHhcCCcc
Q 006189 584 AEEIAKFITVQDKEMEEFVAARDRL---IKFHGEKMDAMRRRHWEEEVELEK------GFDAELTQLMEKYSTHIT 650 (657)
Q Consensus 584 ~e~~~kf~~~Q~ke~e~f~ae~~kL---~~~h~~k~~~lkkr~~e~~~~lek------e~~~~l~~lm~k~~~~~~ 650 (657)
.+++-.....=--|.-++++.|.+| |.+...|+++||+.+-.++++|++ +.+-.+..||+...|..+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
No 254
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.97 E-value=2.4e+02 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 006189 481 LKNRVVKEQRHSKALEATFSIVSEKLR 507 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~k~~e~s~sL~ 507 (657)
|.-+|+..+..|.+||+.+.++...++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777777788887777655553
No 255
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.89 E-value=1.2e+03 Score=27.40 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHh
Q 006189 285 VKLHRELAELLDEE 298 (657)
Q Consensus 285 ka~HrALa~lLe~d 298 (657)
...+.+|..|++.+
T Consensus 122 ~~i~~~l~~l~~~e 135 (569)
T PRK04778 122 EQILEELQELLESE 135 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 256
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.78 E-value=1.6e+03 Score=28.94 Aligned_cols=162 Identities=12% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhccccccHHH-----HHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHH
Q 006189 452 KQKFEMRSYHE-----MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (657)
Q Consensus 452 rkkgdLKSisE-----iv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ 526 (657)
|++-||....| |.++.-. .+...+....-+|++...+++.++..+...++.+.-+.+.+..|..+..+.+.-
T Consensus 415 rLK~dl~AaReKnGvyisee~y~---~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYT---QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 006189 527 NKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARD 606 (657)
Q Consensus 527 neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~ 606 (657)
-..--.--+...++.+++-+. ..++|.....+.+=|-..+. |+..++...+.-..++-.|-...+
T Consensus 492 L~~~~~el~~~~ee~~~~~~~-l~~~e~ii~~~~~se~~l~~--------------~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 492 LQNKNKELESLKEELQQAKAT-LKEEEEIISQQEKSEEKLVD--------------RATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q 006189 607 RLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLME 643 (657)
Q Consensus 607 kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~ 643 (657)
.+-+...+.+..+. .|.-+|++++.
T Consensus 557 ~~~~~~d~n~~~~~------------~~~~~l~~~~~ 581 (1041)
T KOG0243|consen 557 RKDRLDDDNQEVID------------DFQSQLSENLS 581 (1041)
T ss_pred hhhccccccHHHHH------------HHhhhhhHHHH
No 257
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.27 E-value=7.5e+02 Score=24.99 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=15.1
Q ss_pred HHHhhhhhHHHHHHHHHHhcCCc
Q 006189 627 EVELEKGFDAELTQLMEKYSTHI 649 (657)
Q Consensus 627 ~~~leke~~~~l~~lm~k~~~~~ 649 (657)
..+-+++...=|..-|..|.+++
T Consensus 179 k~~A~~~Ar~Ii~~AiQR~A~e~ 201 (201)
T PF12072_consen 179 KEEADKKARRIIATAIQRYASEH 201 (201)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 34456666666777777777654
No 258
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.26 E-value=40 Score=32.37 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.8
Q ss_pred CCeeeccCCCCC
Q 006189 249 ARQWHCPACQGG 260 (657)
Q Consensus 249 ~~tf~CP~C~gk 260 (657)
.+.|.||.|++.
T Consensus 121 ~~~f~Cp~Cg~~ 132 (147)
T smart00531 121 DGTFTCPRCGEE 132 (147)
T ss_pred CCcEECCCCCCE
Confidence 577999999863
No 259
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=24.22 E-value=4.5e+02 Score=32.21 Aligned_cols=51 Identities=16% Similarity=0.338 Sum_probs=35.6
Q ss_pred HhHHHHHHhHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHH
Q 006189 512 ENRIVKQRTKMQHEQNKEEMDFQEQLF-KDQIRIIHEARDE---KEENFEKLQQQ 562 (657)
Q Consensus 512 En~i~r~k~kl~~~~neE~~kmQ~~a~-~~~~rIi~e~~~~---kE~~FEkLqq~ 562 (657)
|+.+++-+.++.+.=++++.+-|+.+| ++|++.|++...+ .++++++|.++
T Consensus 203 Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~~~~~~~~~~~~ 257 (784)
T PRK10787 203 EIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRK 257 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCCcchhHHHHHHHH
Confidence 445566677777777788888887766 4577999887754 44566666654
No 260
>CHL00077 rps18 ribosomal protein S18
Probab=24.17 E-value=99 Score=28.15 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=25.3
Q ss_pred eccCCCCCCCccccccCchhhhhhccc-cC--------chhhhhHHHHHHHHHH
Q 006189 253 HCPACQGGPGAIDWYRGLQPLMTHAKT-KG--------SKRVKLHRELAELLDE 297 (657)
Q Consensus 253 ~CP~C~gkkk~~D~Y~dl~~LLqHA~g-vG--------ak~ka~HrALa~lLe~ 297 (657)
.||+|.+. .+| |+|.. ||++=.+ .| ---...||.|++-+..
T Consensus 19 ~~~~~~~~--~iD-YKnv~-lL~~Fis~~GkIlpRriTGl~~K~QR~l~~aIKr 68 (86)
T CHL00077 19 LPPIQSGD--RID-YKNMS-LLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQ 68 (86)
T ss_pred CCCCCCCC--cCC-ccCHH-HHHHhcCCCCeEcCcccCCcCHHHHHHHHHHHHH
Confidence 49999974 479 99664 5555333 34 1233567777766664
No 261
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.08 E-value=9.6e+02 Score=26.14 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEE 512 (657)
-...+..|....+...+.|++||....++...|..+-++
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777888887777776666665554
No 262
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.01 E-value=1.2e+03 Score=28.38 Aligned_cols=15 Identities=13% Similarity=0.545 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHhc
Q 006189 632 KGFDAELTQLMEKYS 646 (657)
Q Consensus 632 ke~~~~l~~lm~k~~ 646 (657)
++....|.++++.|-
T Consensus 632 ~~k~~~i~riieEYR 646 (652)
T COG2433 632 RQKEEDILRIIEEYR 646 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566777777763
No 263
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.97 E-value=4.3e+02 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETME 511 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mE 511 (657)
++.++.+..-.-++.+++++..-.+..+..+++-+
T Consensus 59 l~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 59 LYITILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544444444444433
No 264
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=23.96 E-value=50 Score=39.93 Aligned_cols=16 Identities=19% Similarity=0.249 Sum_probs=10.3
Q ss_pred CCCeeecCCeEEEEec
Q 006189 324 KDHEIVWPPMVIIMNT 339 (657)
Q Consensus 324 kDeliVWPWmGII~Nt 339 (657)
.|...|=+.+.+|+|+
T Consensus 633 Ed~~~~gkr~~lv~~~ 648 (763)
T TIGR00993 633 EDQIALGKRLVLVGST 648 (763)
T ss_pred hheeeeccceEEEEec
Confidence 3556666677777765
No 265
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=23.91 E-value=1.4e+03 Score=28.11 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=8.2
Q ss_pred CCCCCeeecCCe
Q 006189 322 TEKDHEIVWPPM 333 (657)
Q Consensus 322 ~~kDeliVWPWm 333 (657)
.+..+.+.|=|+
T Consensus 142 ~~~~eq~~~~~e 153 (811)
T KOG4364|consen 142 EDDSEQCLWCWE 153 (811)
T ss_pred Cchhhhhchhhc
Confidence 445677777776
No 266
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.88 E-value=9e+02 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.603 Sum_probs=12.8
Q ss_pred HhHHHHHHHhHHHHHHhh---hhhHHHHHHHHHH
Q 006189 614 EKMDAMRRRHWEEEVELE---KGFDAELTQLMEK 644 (657)
Q Consensus 614 ~k~~~lkkr~~e~~~~le---ke~~~~l~~lm~k 644 (657)
.|-..||+-|.||.-.|| ++++++...||.+
T Consensus 366 ~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 366 EKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333 2344444444443
No 267
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=23.87 E-value=1.1e+03 Score=26.99 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHhhcCCChh
Q 006189 391 GGYLEAERLHKHFAEQGTDRD 411 (657)
Q Consensus 391 sGf~nA~rLekhFe~qg~GRk 411 (657)
=||.+-+.|.---+.-+|=|.
T Consensus 81 yGF~d~ltf~SVVelIn~yr~ 101 (464)
T KOG4637|consen 81 YGFSDPLTFNSVVELINHYRN 101 (464)
T ss_pred cCCCCchhhHHHHHHHHHHhh
Confidence 366666666665555544333
No 268
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.73 E-value=8.9e+02 Score=28.68 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=9.2
Q ss_pred eeecCCeEEEEeccc
Q 006189 327 EIVWPPMVIIMNTRL 341 (657)
Q Consensus 327 liVWPWmGII~Nt~t 341 (657)
+=.+|+-+.|.++..
T Consensus 52 lslfpl~l~i~gl~V 66 (555)
T TIGR03545 52 TGLFPLQLSIQGLQV 66 (555)
T ss_pred eeecCCeEEEeeEEE
Confidence 334676677776654
No 269
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.73 E-value=1.1e+02 Score=30.70 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 492 SKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 492 lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
|+.||.+||+. +|.|- |++.+ ..-.+..+...||.=+|.|+-|.|. .+|++
T Consensus 2 LeD~EsklN~A-------IERna-------lLE~E----LdEKE~L~~~~QRLkDE~RDLKqEl--~V~ek 52 (166)
T PF04880_consen 2 LEDFESKLNQA-------IERNA-------LLESE----LDEKENLREEVQRLKDELRDLKQEL--IVQEK 52 (166)
T ss_dssp HHHHHHHHHHH-------HHHHH-------HHHHH----HHHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHH-------HHHhH-------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 57788888874 44322 22222 1223445666788888888888887 44444
No 270
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=23.72 E-value=1.3e+03 Score=27.58 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006189 533 FQEQLFKDQIRIIHEARDEKE 553 (657)
Q Consensus 533 mQ~~a~~~~~rIi~e~~~~kE 553 (657)
.|-+.++..++|+++....|+
T Consensus 342 aqari~~~l~kv~~k~~~~k~ 362 (707)
T KOG0957|consen 342 AQARIREELDKVIEKECKNKP 362 (707)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 455555556666665555543
No 271
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=23.61 E-value=6.8e+02 Score=24.27 Aligned_cols=121 Identities=22% Similarity=0.255 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 482 KNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQ 561 (657)
Q Consensus 482 ~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq 561 (657)
..++......+.+||..-..+...|+-.++- . ..-+.|...+-.=+.+.....+....=.|....-.-|..+..|++
T Consensus 8 q~el~~ie~~~~~lE~~g~~lE~~LR~~~~~-~--~~e~~Ll~ewf~Lv~eKn~LvrreseL~~~~~~~~Le~~~~~L~~ 84 (142)
T PF12130_consen 8 QRELEEIEEEQRELEERGVELEKQLRSAEEN-D--EEEEELLQEWFKLVNEKNALVRRESELMYMEKEQELEDRQARLEQ 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555555666666666666667666630 0 013444444444455555555555554444444556788888888
Q ss_pred HHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 006189 562 QEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGE 614 (657)
Q Consensus 562 ~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~ 614 (657)
+-|..+.-.. ..-|+..+.|-+.+- .++=..|+.|+.|+..-+.
T Consensus 85 ELr~l~~~~d--~~KT~~d~~rE~~Ll-------~elv~lV~~Rd~LV~~le~ 128 (142)
T PF12130_consen 85 ELRELLAKPD--WEKTEEDKQREEELL-------QELVELVNKRDALVQDLEE 128 (142)
T ss_pred HHHHHHhccc--cccChhhHHHHHHHH-------HHHHHHHHhhHHHHHcchH
Confidence 8777664332 234455554544432 2455677888888876544
No 272
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=23.59 E-value=85 Score=30.79 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHHHhcccCceeecC-----------CCC-----eeeccCCCCCC
Q 006189 222 DTRKKSRWFKKFFESLESLTVEEINE-----------PAR-----QWHCPACQGGP 261 (657)
Q Consensus 222 e~~k~~k~f~K~y~~Lk~g~~~~kn~-----------~~~-----tf~CP~C~gkk 261 (657)
.....-+-|.+|.+.|..-+-.++.. ... .=+|+.|++.+
T Consensus 52 ~~~~~D~~f~~F~~rl~~~P~QvlRY~~gG~PLw~s~~~~~~~~~ip~C~~Cg~~R 107 (164)
T PF04194_consen 52 EEDEVDKAFLKFQKRLSRNPEQVLRYCRGGKPLWISSTPIPPESDIPKCENCGSPR 107 (164)
T ss_pred cccccCHHHHHHHHHHhcCCCeEEEECCCCeEEEecCCCCCccccCCCCccCCCcc
Confidence 34556688999999997765443332 111 23799998754
No 273
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.55 E-value=8e+02 Score=26.32 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=4.1
Q ss_pred HHHHHhHHHH
Q 006189 522 MQHEQNKEEM 531 (657)
Q Consensus 522 l~~~~neE~~ 531 (657)
|..+.+.+.+
T Consensus 80 L~~ek~~~q~ 89 (246)
T KOG4657|consen 80 LKTEKEARQM 89 (246)
T ss_pred HHHHHHHHHH
Confidence 4444433333
No 274
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=23.52 E-value=27 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.574 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHhhhh
Q 006189 286 KLHRELAELLDEELRR 301 (657)
Q Consensus 286 a~HrALa~lLe~dla~ 301 (657)
-+-++|+++|-.-+..
T Consensus 64 dFeref~kmm~eS~~s 79 (170)
T PF04050_consen 64 DFEREFQKMMAESLES 79 (170)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4558888888876643
No 275
>PRK12495 hypothetical protein; Provisional
Probab=23.36 E-value=66 Score=33.82 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCchhh-----hhhhhhhhhhhHHHHHHHHhcccCceeecCCCCeeeccCCCC
Q 006189 212 FDSDTS-----QKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQG 259 (657)
Q Consensus 212 ~Dsd~s-----e~s~e~~k~~k~f~K~y~~Lk~g~~~~kn~~~~tf~CP~C~g 259 (657)
||-++. |+|-....|.+--++.-+.|..|. .-..+|||.|+.
T Consensus 4 FDkEaEREkLREKye~d~~~R~~~~~ma~lL~~ga------tmsa~hC~~CG~ 50 (226)
T PRK12495 4 FDKEAEREKLREKYEQDEQKREATERMSELLLQGA------TMTNAHCDECGD 50 (226)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhc------ccchhhcccccC
Confidence 665553 566666667777777888887773 135678888864
No 276
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.36 E-value=9.6e+02 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 531 MDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV 567 (657)
Q Consensus 531 ~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~ 567 (657)
+.||=.-...++.-+.+.-..-.+++.++-+.+|+.+
T Consensus 118 K~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 118 KAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443344444555555444443
No 277
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.33 E-value=1.2e+03 Score=27.07 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEE 554 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~ 554 (657)
++.+..|+-+|...++...-|......-=++|....+|.+ +.+++ .+-++.-+....+|+++ |=.
T Consensus 215 ~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-----~~l~k------~k~~~~~l~~K~~iL~e----kv~ 279 (446)
T KOG4438|consen 215 NKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-----DLLQK------EKSAMVELQEKAKILEE----KVT 279 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHH------HHHHHHHHHHHHHHHHh----HhH
Confidence 3444444445555444444455555554555655555522 22221 22333345566677773 444
Q ss_pred HHHHHHHHHH--HHHhhhcC-CCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhh
Q 006189 555 NFEKLQQQER--EKVKQSIA-NPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELE 631 (657)
Q Consensus 555 ~FEkLqq~er--ek~~~~n~-~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~le 631 (657)
.|+-++-+-. -+..+++. -..+.|---+-.++++.. ++-+++...+-+..+..+-|-+....+++.--.-+-.++
T Consensus 280 ~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~L--e~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~ 357 (446)
T KOG4438|consen 280 NLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILEL--EDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLE 357 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544443311 12233333 122222222233333321 333356665565555556666666666665555555666
Q ss_pred hhhHHHHHHHHHHh
Q 006189 632 KGFDAELTQLMEKY 645 (657)
Q Consensus 632 ke~~~~l~~lm~k~ 645 (657)
.+--++.+++|++-
T Consensus 358 ~r~~E~v~~~md~~ 371 (446)
T KOG4438|consen 358 NRKTESVKAMMDDN 371 (446)
T ss_pred HhhHHHHHHHHHHH
Confidence 66667777777653
No 278
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.30 E-value=1.4e+03 Score=27.64 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 480 YLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKL 559 (657)
Q Consensus 480 ~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkL 559 (657)
.|+..+.++...|+.||..+....+...+|--+ |.++++.+--.|-..-|.++|+-+...+..=+++.-+-
T Consensus 370 sLas~glk~ds~Lk~leIalEqkkEec~kme~q---------LkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~ka 440 (654)
T KOG4809|consen 370 SLASAGLKRDSKLKSLEIALEQKKEECSKMEAQ---------LKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKA 440 (654)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH---------HHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766666666655444 66677766666666677788888877776666666666
Q ss_pred HHH
Q 006189 560 QQQ 562 (657)
Q Consensus 560 qq~ 562 (657)
|.+
T Consensus 441 qae 443 (654)
T KOG4809|consen 441 QAE 443 (654)
T ss_pred HHH
Confidence 654
No 279
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.24 E-value=8.5e+02 Score=25.46 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR 519 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k 519 (657)
..-.+..|..++......+..|+..+.++..++.|+.-+..-.|+|
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777888888888888888888888888887775544444
No 280
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=48 Score=34.01 Aligned_cols=7 Identities=43% Similarity=0.838 Sum_probs=5.6
Q ss_pred CCCcCCC
Q 006189 1 MSARRGG 7 (657)
Q Consensus 1 ~~~~~~~ 7 (657)
|||++|.
T Consensus 1 MsSq~GN 7 (227)
T KOG3241|consen 1 MSSQQGN 7 (227)
T ss_pred CCcccCc
Confidence 8888885
No 281
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.07 E-value=35 Score=42.39 Aligned_cols=13 Identities=8% Similarity=0.414 Sum_probs=7.6
Q ss_pred ccCchhhhhhccc
Q 006189 267 YRGLQPLMTHAKT 279 (657)
Q Consensus 267 Y~dl~~LLqHA~g 279 (657)
|.-|..||.|...
T Consensus 394 f~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 394 FHAYIALLKQTRP 406 (1233)
T ss_pred HHHHHHHHHcCCC
Confidence 3345677777653
No 282
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=22.93 E-value=6.6e+02 Score=29.33 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=8.7
Q ss_pred CCeeeccCCCCC
Q 006189 249 ARQWHCPACQGG 260 (657)
Q Consensus 249 ~~tf~CP~C~gk 260 (657)
...=.||+|-.+
T Consensus 173 tELPTCpVCLER 184 (493)
T KOG0804|consen 173 TELPTCPVCLER 184 (493)
T ss_pred ccCCCcchhHhh
Confidence 344579999865
No 283
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=49 Score=36.65 Aligned_cols=27 Identities=22% Similarity=0.677 Sum_probs=18.0
Q ss_pred HHHHHHHhcccCceeecCCCCeeeccCCCCCCCc
Q 006189 230 FKKFFESLESLTVEEINEPARQWHCPACQGGPGA 263 (657)
Q Consensus 230 f~K~y~~Lk~g~~~~kn~~~~tf~CP~C~gkkk~ 263 (657)
|++||+.-+-+ . ...||||.|+.+..+
T Consensus 270 ~~~f~~~e~L~------g-~d~W~CpkC~~k~ss 296 (415)
T COG5533 270 IDRFYEEEKLE------G-KDAWRCPKCGRKESS 296 (415)
T ss_pred HHHhhhHHhhc------C-cccccCchhcccccc
Confidence 67777643322 2 689999999876443
No 284
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.70 E-value=1.5e+03 Score=27.90 Aligned_cols=151 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH-------HHHHhHHHHHHh------HHHHHHHHHH
Q 006189 471 MSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRI-------VKQRTKMQHEQN------KEEMDFQEQL 537 (657)
Q Consensus 471 m~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i-------~r~k~kl~~~~n------eE~~kmQ~~a 537 (657)
|..++.+|.-.++..+++.-+++.|+..++....+|...-+++.. +-++..++...| -+.+-.|..+
T Consensus 456 ~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~ 535 (716)
T KOG4593|consen 456 MEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDY 535 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHH---HHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 006189 538 FKDQIRIIH-------EARDEKEENFEKLQQQ---EREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDR 607 (657)
Q Consensus 538 ~~~~~rIi~-------e~~~~kE~~FEkLqq~---erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~k 607 (657)
-....+|++ ..+.++....+.||++ -++.+...-.+-....+..--+-.+--| -||+..|..|...
T Consensus 536 ~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~----~~ev~qlk~ev~s 611 (716)
T KOG4593|consen 536 EENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAF----SKEVAQLKKEVES 611 (716)
T ss_pred hhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcc----hHHHHHHHHHHHH
Q ss_pred HHHHHhHhHHHHHHHhHH
Q 006189 608 LIKFHGEKMDAMRRRHWE 625 (657)
Q Consensus 608 L~~~h~~k~~~lkkr~~e 625 (657)
.-+...+=++-+..++-|
T Consensus 612 ~ekr~~rlk~vF~~ki~e 629 (716)
T KOG4593|consen 612 AEKRNQRLKEVFASKIQE 629 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
No 285
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=22.63 E-value=6.1e+02 Score=27.86 Aligned_cols=75 Identities=29% Similarity=0.339 Sum_probs=51.4
Q ss_pred cccccHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHh
Q 006189 455 FEMRSYHEMVVNQIRQM-SEDNQQLIYLKNRVVKEQ------RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (657)
Q Consensus 455 gdLKSisEiv~E~~Rqm-~k~nqlv~~L~nqIe~kn------k~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~n 527 (657)
-+|.|+.||.-....-| ++=-....-++|.|..-| +.++.|-..+...+-+|.++.++ |-++=+.-..-|
T Consensus 199 ~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIse---LEKkFkIdd~tn 275 (353)
T PF01540_consen 199 NELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKGVEELKKLAQEISSHSNKLKATISE---LEKKFKIDDSTN 275 (353)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccccccc
Confidence 46888888777666656 455556667777777777 67788888888888888888888 223444445555
Q ss_pred HHHHH
Q 006189 528 KEEMD 532 (657)
Q Consensus 528 eE~~k 532 (657)
.+.|+
T Consensus 276 ~~e~k 280 (353)
T PF01540_consen 276 KEEMK 280 (353)
T ss_pred hhHHH
Confidence 54443
No 286
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=22.59 E-value=54 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.2
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcccc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKTK 280 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~gv 280 (657)
+.|.|.+|.- +|.+...+.+|-.|.
T Consensus 2 ~~~~C~~C~~------~~~~~~~~~~H~~gk 26 (35)
T smart00451 2 GGFYCKLCNV------TFTDEISVEAHLKGK 26 (35)
T ss_pred cCeEccccCC------ccCCHHHHHHHHChH
Confidence 5699999962 377788999996663
No 287
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=22.51 E-value=1e+03 Score=26.02 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSI 501 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e 501 (657)
|..++.+|+..+.+....-..|..
T Consensus 22 l~~i~e~~~~~~~~~~~~~~~~~~ 45 (289)
T PF05149_consen 22 LERIKEKIQNTDAEDAAQRKRYAA 45 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544444444444443
No 288
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=45 Score=40.16 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 006189 550 DEKEENFEKL 559 (657)
Q Consensus 550 ~~kE~~FEkL 559 (657)
++||+-|--+
T Consensus 803 eEK~sAFrG~ 812 (885)
T KOG2023|consen 803 EEKESAFRGL 812 (885)
T ss_pred hhHHHHHHHH
Confidence 4667766544
No 289
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.33 E-value=2e+02 Score=27.18 Aligned_cols=61 Identities=25% Similarity=0.346 Sum_probs=44.7
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-C-CCcceEEEEeCCCccchHHHHHHH
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-Q-GHRGMSVLIFESSAGGYLEAERLH 400 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~-GH~G~aVV~F~~dwsGf~nA~rLe 400 (657)
+-.+.|-|++.. .+..+|.+.|..|.++ .++..+.. . -.+|++.|.|...-....-...+.
T Consensus 115 ~~~l~v~nL~~~---------~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPYD---------VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCCC---------CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 678889998743 3578899999999997 66666664 3 459999999998755544444443
No 290
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=22.25 E-value=38 Score=27.28 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=7.6
Q ss_pred eccCCCCCCC
Q 006189 253 HCPACQGGPG 262 (657)
Q Consensus 253 ~CP~C~gkkk 262 (657)
.||||++...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 5999988643
No 291
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=22.13 E-value=1.3e+02 Score=34.22 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=38.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCcc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAG 391 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~dws 391 (657)
.+.|-|++.. .+...|.+.|+.|..+ .++...+..| +.|++.|.|.+.-+
T Consensus 90 ~vfV~nLp~~---------~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 90 NIFVKNLDKS---------VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred ceEEcCCCcc---------CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 3667887642 2578899999999875 4667777777 68999999998654
No 292
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=21.93 E-value=42 Score=37.17 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=3.7
Q ss_pred CCeeeccC
Q 006189 249 ARQWHCPA 256 (657)
Q Consensus 249 ~~tf~CP~ 256 (657)
...|+|-+
T Consensus 318 KnKWKc~L 325 (348)
T KOG2652|consen 318 KNKWKCYL 325 (348)
T ss_pred cceeeEEe
Confidence 44455543
No 293
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.88 E-value=1.6e+03 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 006189 502 VSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQ 541 (657)
Q Consensus 502 ~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~ 541 (657)
++++|+..+.| ..+--.+++.-|+|+.|.-+..+++-
T Consensus 435 lN~~Lq~ql~e---s~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 435 LNMSLQNQLQE---SLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred HHHHHHHHHHH---HHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 45556555555 22334455666666666555544443
No 294
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=21.71 E-value=2e+02 Score=23.60 Aligned_cols=42 Identities=29% Similarity=0.456 Sum_probs=30.2
Q ss_pred CCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 006189 572 ANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR 621 (657)
Q Consensus 572 ~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk 621 (657)
+.+.+.|+-+ -...++|.+.-|.||++ + |.+.|.+....|+|
T Consensus 6 ~~pi~le~Lk-~~K~y~Kl~KKq~KEl~---~----lkKKh~Ke~~~mQK 47 (47)
T PF06631_consen 6 VEPITLEELK-QHKAYVKLLKKQQKELE---E----LKKKHQKERSSMQK 47 (47)
T ss_pred CCCCCHHHHH-HhHHHHHHHHHHHHHHH---H----HHHHHHHHHHhhcC
Confidence 4555666665 34558888888888777 4 88889998888763
No 295
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=21.66 E-value=1.7e+03 Score=28.26 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=42.2
Q ss_pred HHHHHHHhhhhHHHH--HHHHHHhHHHHHHhHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 006189 492 SKALEATFSIVSEKL--RETMEENRIVKQRTKMQHEQNKEEMDFQEQ-LFKDQIRIIHEARDEKEENFEKLQQQ------ 562 (657)
Q Consensus 492 lqeLE~k~~e~s~sL--~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~-a~~~~~rIi~e~~~~kE~~FEkLqq~------ 562 (657)
+-+||-.|.-....| .+..++|.|-+++-.+.++..-.-|+--.. ..+|-.+-.-....+|...+++|...
T Consensus 864 lLele~E~egkldglieakeaeenkihK~egEltcaE~i~q~kdee~altdhekeasicl~eeKDqei~EleailekQNc 943 (1424)
T KOG4572|consen 864 LLELELENEGKLDGLIEAKEAEENKIHKKEGELTCAECIKQMKDEEEALTDHEKEASICLIEEKDQEIEELEAILEKQNC 943 (1424)
T ss_pred HHHHhhhcccccchHHHHHHHHhhHHHHhhhhhHHHHHHHHcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 333444444444444 233456666666666666554433333332 23444444445556788888888765
Q ss_pred HHHHHhhh
Q 006189 563 EREKVKQS 570 (657)
Q Consensus 563 erek~~~~ 570 (657)
++++++|.
T Consensus 944 a~eeakqn 951 (1424)
T KOG4572|consen 944 AHEEAKQN 951 (1424)
T ss_pred hHHHHhhc
Confidence 45566655
No 296
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=21.63 E-value=3.8e+02 Score=30.07 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=49.0
Q ss_pred hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHH
Q 006189 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (657)
Q Consensus 452 rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ 526 (657)
-+.|.+-|+.|+..|.-.| |+--.-+-+.+++.++.+.-.+.++..+...+-++ |++|+.|+++.
T Consensus 144 nl~YqVDtLKD~LeE~eeq-------LaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~---l~QRdeliee~ 208 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQ-------LAESYRENEEKSKELERQKHMCSVLQHKMEELKEG---LRQRDELIEEH 208 (405)
T ss_pred ceeeeHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHc
Confidence 4568888888888777664 33344466777788888888888888888888877 67799998764
No 297
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=21.63 E-value=53 Score=40.12 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=7.8
Q ss_pred HHhhhhHHHHHHHHHH
Q 006189 497 ATFSIVSEKLRETMEE 512 (657)
Q Consensus 497 ~k~~e~s~sL~r~mEE 512 (657)
.++.++-..+..++..
T Consensus 697 ~af~eif~p~~~lL~~ 712 (840)
T PF04147_consen 697 PAFPEIFEPFLSLLSH 712 (840)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 3444444555555544
No 298
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.60 E-value=8.5e+02 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 524 HEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 524 ~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
|.|-.+...+--..++-|++||+|+ ||++|+.|-+.
T Consensus 338 ~~~l~~l~~i~n~~ldvqlkvfdE~---~e~Dl~el~~r 373 (1102)
T KOG1924|consen 338 HKYLPDLTEINNDILDVQLKVFDEH---KEDDLEELSGR 373 (1102)
T ss_pred HHHHHHhhhhccHHHHHHHHHHhhh---hhhhHHHHHhH
Confidence 4455555555556667777888875 67788887765
No 299
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=21.53 E-value=1.5e+02 Score=31.56 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=49.9
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhcc-CcceeeeccCCCCC-cceEEEEeCCCccchHHHHHHHHHHhhcC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILY-AAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAERLHKHFAEQG 407 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF-~p~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~rLekhFe~qg 407 (657)
++|-|.++ |+....|++-|..| .+.+|-.-|++.|- .|++-|.|...-.++.--..|+. |..+|
T Consensus 86 v~v~NL~~---------~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG 151 (243)
T KOG0533|consen 86 VNVSNLPY---------GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDG 151 (243)
T ss_pred eeeecCCc---------CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCC
Confidence 66777654 45677888889988 77788889999986 79999999998777777777776 66543
No 300
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.44 E-value=1.1e+03 Score=25.68 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=51.4
Q ss_pred cceeeeeeccccccCCCCccccccc-hhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006189 427 KRQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEK 505 (657)
Q Consensus 427 ~~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~s 505 (657)
+..||--|+.+-++... .-.. ...-+|-+|...+.+.+. ...+.|..+..+|......-..|+.+.......
T Consensus 133 GA~LydlL~kE~~lr~~----R~~a~~r~~e~~~iE~~l~~ai~---~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 133 GASLYDLLGKEVELREE----RQRALARPLELNEIEKALKEAIK---AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHhchHhHHHH----HHHHHcCCcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887766431 1122 566777777777777776 666677777777776667777777777766666
Q ss_pred HHHHHH
Q 006189 506 LRETME 511 (657)
Q Consensus 506 L~r~mE 511 (657)
|.+...
T Consensus 206 LER~qK 211 (267)
T PF10234_consen 206 LERNQK 211 (267)
T ss_pred HHHHHH
Confidence 665543
No 301
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=21.42 E-value=1.2e+03 Score=26.13 Aligned_cols=61 Identities=8% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006189 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHE 547 (657)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e 547 (657)
++.|+-..+.........|...+..+.....++..+ +..|..+-..|-...+..+..||++
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~q----------lE~~v~~K~~~E~~L~~KF~~vLNe 191 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQ----------LEKFVNAKEEHEEDLYAKFVLVLNE 191 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666555555555555544444433333333333 3344444444555556666777764
No 302
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=21.38 E-value=5e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhH
Q 006189 491 HSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK 528 (657)
Q Consensus 491 ~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ne 528 (657)
-++.||..+.+-.....+..-| |+.|++-|++
T Consensus 58 Sie~leq~~~~w~~~rEki~~e------~eaLQ~IY~e 89 (125)
T PF13256_consen 58 SIEELEQAIVEWKQGREKIVAE------REALQNIYTE 89 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 5666666666555555554444 7777777754
No 303
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.22 E-value=4.1e+02 Score=21.90 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Q 006189 486 VKEQRHSKALEATFSIVSEKLRETMEENR 514 (657)
Q Consensus 486 e~knk~lqeLE~k~~e~s~sL~r~mEEn~ 514 (657)
..+..+++.||..+..+......+..++.
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788777777666666655533
No 304
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=57 Score=33.48 Aligned_cols=9 Identities=44% Similarity=0.516 Sum_probs=4.8
Q ss_pred CCchhhhhh
Q 006189 212 FDSDTSQKS 220 (657)
Q Consensus 212 ~Dsd~se~s 220 (657)
.|||+-+.+
T Consensus 215 edsde~~q~ 223 (227)
T KOG3241|consen 215 EDSDENEQS 223 (227)
T ss_pred ccccccccc
Confidence 455555544
No 305
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=21.03 E-value=37 Score=37.49 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=17.7
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhh
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTH 276 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqH 276 (657)
++-.|+|+||.. . |+.+..|--|
T Consensus 395 ~~KPYrCevC~K-----R-YKNlNGLKYH 417 (423)
T COG5189 395 KDKPYRCEVCDK-----R-YKNLNGLKYH 417 (423)
T ss_pred cCCceeccccch-----h-hccCccceec
Confidence 357899999963 2 8888888777
No 306
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.95 E-value=9.9e+02 Score=25.16 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 527 NKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 527 neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
-+|++.+++-.. +.-.||.+.+.+++..++..++.
T Consensus 52 ~eeLrqI~~DIn-~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 52 VEELRQINQDIN-TLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444322 24456666666666655555443
No 307
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=20.87 E-value=1.8e+03 Score=28.12 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=10.7
Q ss_pred hHHHHHHHHhcccC
Q 006189 228 RWFKKFFESLESLT 241 (657)
Q Consensus 228 k~f~K~y~~Lk~g~ 241 (657)
.++..+|..+++..
T Consensus 163 ~lq~~vF~s~~s~r 176 (980)
T KOG0980|consen 163 ELQQTVFSSMNSSR 176 (980)
T ss_pred HHHHHHHHHhhhcc
Confidence 35678899998865
No 308
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.71 E-value=75 Score=39.53 Aligned_cols=19 Identities=5% Similarity=0.281 Sum_probs=11.3
Q ss_pred cceeeeccCCCCCcceEEE
Q 006189 366 AVRARHSYGPQGHRGMSVL 384 (657)
Q Consensus 366 p~kv~~l~g~~GH~G~aVV 384 (657)
|++++.++.+++-.||.-|
T Consensus 197 plqI~Sv~a~D~lkGyIYI 215 (1024)
T KOG1999|consen 197 PLQIKSVFAKDHLKGYIYI 215 (1024)
T ss_pred CceEEEEEeccccceeEEE
Confidence 5666666666666666544
No 309
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=20.63 E-value=1.2e+02 Score=27.00 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=4.9
Q ss_pred CCCCCCCCcc
Q 006189 145 RPPLEHGWNW 154 (657)
Q Consensus 145 ~~~~~~g~~w 154 (657)
|||.-+-|.-
T Consensus 11 RPpY~GT~~k 20 (77)
T PF12253_consen 11 RPPYYGTWTK 20 (77)
T ss_pred CCCEeeEEcc
Confidence 5555554443
No 310
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=20.44 E-value=1.7e+02 Score=34.95 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=42.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC--CcceEEEEeCCCccchHHHHHHHHHHh
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG--HRGMSVLIFESSAGGYLEAERLHKHFA 404 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G--H~G~aVV~F~~dwsGf~nA~rLekhFe 404 (657)
.+.|-|++.. .+...|++.|+.|+++ .++...++.+ ++||+.|+|.+- .--..|+.--+.|+
T Consensus 206 rLfVgnLp~~---------vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~-e~A~kAI~amNg~e 270 (612)
T TIGR01645 206 RIYVASVHPD---------LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL-QSQSEAIASMNLFD 270 (612)
T ss_pred eEEeecCCCC---------CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH-HHHHHHHHHhCCCe
Confidence 5667787542 3578899999999997 5677776543 799999999973 33334444444444
No 311
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=9e+02 Score=29.96 Aligned_cols=101 Identities=10% Similarity=0.208 Sum_probs=58.8
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHH
Q 006189 461 HEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIV---SEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQL 537 (657)
Q Consensus 461 sEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~---s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a 537 (657)
.|....-. .++.-+++...+++-+..+..+.|++=+..+.. ..-|.-+++|..++.-..++...-++.|-|-|+.+
T Consensus 151 ~e~l~~~~-~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREy 229 (782)
T COG0466 151 PEELQSLN-SIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREY 229 (782)
T ss_pred HHHHHHHh-cccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 455666677777766655555555554444421 22334455666666666666666777778888776
Q ss_pred H-HHHHHHHHHHHHHH---HHHHHHHHHH
Q 006189 538 F-KDQIRIIHEARDEK---EENFEKLQQQ 562 (657)
Q Consensus 538 ~-~~~~rIi~e~~~~k---E~~FEkLqq~ 562 (657)
| .+|.+.|++....- ..+.+++.++
T Consensus 230 yL~EQlKaIqkELG~~~d~~~e~~~~~~k 258 (782)
T COG0466 230 YLREQLKAIQKELGEDDDDKDEVEELREK 258 (782)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHH
Confidence 6 45779999877643 2345555443
No 312
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.03 E-value=36 Score=27.47 Aligned_cols=13 Identities=31% Similarity=1.053 Sum_probs=7.9
Q ss_pred CCeeeccCCCCCC
Q 006189 249 ARQWHCPACQGGP 261 (657)
Q Consensus 249 ~~tf~CP~C~gkk 261 (657)
-..|+||.|...|
T Consensus 32 p~~w~CP~C~a~K 44 (47)
T PF00301_consen 32 PDDWVCPVCGAPK 44 (47)
T ss_dssp -TT-B-TTTSSBG
T ss_pred CCCCcCcCCCCcc
Confidence 3679999998753
Done!