Query 006189
Match_columns 657
No_of_seqs 146 out of 163
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 18:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 2.5E-59 8.7E-64 449.2 14.0 167 322-500 3-172 (172)
2 3oja_B Anopheles plasmodium-re 93.7 1.1 3.8E-05 48.6 15.4 11 635-645 571-581 (597)
3 3oja_B Anopheles plasmodium-re 91.1 3.6 0.00012 44.6 15.3 31 607-637 558-588 (597)
4 2dfs_A Myosin-5A; myosin-V, in 90.3 7.7 0.00026 46.6 18.2 22 618-639 1056-1077(1080)
5 3na7_A HP0958; flagellar bioge 89.9 17 0.00057 36.2 17.9 18 626-643 165-182 (256)
6 1wez_A HnRNP H', FTP-3, hetero 89.4 0.49 1.7E-05 40.4 5.4 57 332-398 16-73 (102)
7 3ghg_A Fibrinogen alpha chain; 87.5 9.6 0.00033 42.6 15.1 36 473-508 61-96 (562)
8 2cq3_A RNA-binding protein 9; 86.5 1.6 5.4E-05 36.4 6.7 49 332-389 16-65 (103)
9 3vem_A Helicase protein MOM1; 85.6 2.2 7.5E-05 39.0 7.4 47 593-640 37-83 (115)
10 2dnn_A RNA-binding protein 12; 84.6 1.7 5.9E-05 37.9 6.2 57 332-398 17-74 (109)
11 2cpy_A RNA-binding protein 12; 83.5 1.8 6E-05 37.2 5.8 47 333-388 17-66 (114)
12 2lmi_A GRSF-1, G-rich sequence 83.4 1.9 6.5E-05 36.6 5.8 58 332-399 12-74 (107)
13 2dgw_A Probable RNA-binding pr 83.4 2.3 8E-05 34.5 6.2 57 332-398 11-68 (91)
14 2cqi_A Nucleolysin TIAR; RNA r 83.3 2.1 7.3E-05 35.6 6.0 49 332-389 16-65 (103)
15 1wg5_A Heterogeneous nuclear r 82.8 2.3 8E-05 35.8 6.1 48 332-388 16-66 (104)
16 2hgm_A HNRPF protein, heteroge 82.5 2.2 7.6E-05 38.5 6.2 56 333-398 44-102 (126)
17 2dha_A FLJ20171 protein; RRM d 82.5 1.5 5.1E-05 39.3 5.0 57 331-397 23-85 (123)
18 2db1_A Heterogeneous nuclear r 82.1 2.2 7.7E-05 37.0 5.9 58 332-399 18-80 (118)
19 2hgn_A Heterogeneous nuclear r 81.8 1.2 4.2E-05 40.7 4.3 48 332-388 47-95 (139)
20 3d2w_A TAR DNA-binding protein 80.3 3.3 0.00011 34.2 6.1 48 331-390 11-59 (89)
21 2ywk_A Putative RNA-binding pr 80.2 3.4 0.00012 33.6 6.1 51 332-391 17-69 (95)
22 1jad_A PLC-beta, phospholipase 80.1 56 0.0019 33.4 18.2 22 598-619 176-197 (251)
23 4f25_A Polyadenylate-binding p 79.9 2 6.7E-05 37.1 4.7 48 334-390 8-56 (115)
24 2cpe_A RNA-binding protein EWS 79.5 3.9 0.00013 34.5 6.4 49 332-389 16-75 (113)
25 2err_A Ataxin-2-binding protei 78.8 3.7 0.00013 35.0 6.0 50 333-391 31-81 (109)
26 1x4a_A Splicing factor, argini 78.3 4.7 0.00016 33.9 6.5 49 332-389 23-71 (109)
27 3vkg_A Dynein heavy chain, cyt 78.0 1.2E+02 0.0041 40.8 21.9 18 608-625 2036-2053(3245)
28 2dnh_A Bruno-like 5, RNA bindi 78.0 4.5 0.00016 33.6 6.3 50 331-389 15-66 (105)
29 2e5j_A Methenyltetrahydrofolat 77.2 3.3 0.00011 34.2 5.1 48 332-390 20-67 (97)
30 2do4_A Squamous cell carcinoma 76.9 4.7 0.00016 33.3 6.0 49 332-389 18-68 (100)
31 3nmr_A Cugbp ELAV-like family 75.6 3.7 0.00013 36.3 5.3 49 333-390 97-147 (175)
32 3ulh_A THO complex subunit 4; 75.1 5.5 0.00019 33.2 6.0 49 332-389 30-80 (107)
33 1wi8_A EIF-4B, eukaryotic tran 74.8 5 0.00017 33.4 5.7 56 332-397 16-74 (104)
34 2do0_A HnRNP M, heterogeneous 74.6 5.3 0.00018 33.7 5.8 48 333-389 17-66 (114)
35 2kt5_A RNA and export factor-b 74.3 6.3 0.00022 33.9 6.4 48 333-389 37-86 (124)
36 2cq4_A RNA binding motif prote 74.1 7.9 0.00027 32.7 6.9 59 332-400 26-87 (114)
37 1whw_A Hypothetical protein ri 73.7 7 0.00024 32.1 6.3 48 333-389 10-60 (99)
38 1i84_S Smooth muscle myosin he 73.4 18 0.00062 43.5 12.0 20 377-396 576-599 (1184)
39 2hgl_A HNRPF protein, heteroge 73.3 4.9 0.00017 36.5 5.6 57 332-398 45-106 (136)
40 2cph_A RNA binding motif prote 73.1 7 0.00024 32.4 6.2 50 332-390 16-69 (107)
41 1wel_A RNA-binding protein 12; 72.8 5.2 0.00018 34.7 5.5 57 332-398 26-85 (124)
42 3sde_A Paraspeckle component 1 72.8 12 0.0004 36.5 8.6 51 333-392 98-150 (261)
43 2ek1_A RNA-binding protein 12; 72.4 4.3 0.00015 33.0 4.6 50 331-389 15-67 (95)
44 2dng_A Eukaryotic translation 72.4 6.4 0.00022 32.7 5.8 48 332-388 16-65 (103)
45 1s79_A Lupus LA protein; RRM, 72.3 7.1 0.00024 33.4 6.1 47 333-388 13-61 (103)
46 1x5u_A Splicing factor 3B subu 72.0 8.2 0.00028 32.0 6.3 49 332-389 16-67 (105)
47 1i84_S Smooth muscle myosin he 71.9 13 0.00046 44.6 10.4 17 229-245 351-367 (1184)
48 1deq_A Fibrinogen (alpha chain 71.9 61 0.0021 35.0 14.2 33 476-508 88-120 (390)
49 2dit_A HIV TAT specific factor 71.7 2.2 7.4E-05 36.6 2.7 58 332-390 16-75 (112)
50 3ns6_A Eukaryotic translation 71.7 3.4 0.00012 34.6 3.9 54 333-389 8-64 (100)
51 2dgv_A HnRNP M, heterogeneous 71.5 6.8 0.00023 31.6 5.6 48 333-389 10-58 (92)
52 3lqv_A PRE-mRNA branch site pr 71.2 7.4 0.00025 32.9 6.0 47 333-389 10-57 (115)
53 2elu_A Zinc finger protein 406 71.1 1.1 3.7E-05 32.9 0.5 21 252-278 10-30 (37)
54 2xs2_A Deleted in azoospermia- 70.9 7.1 0.00024 32.3 5.7 57 332-398 10-68 (102)
55 2la6_A RNA-binding protein FUS 70.2 9.6 0.00033 31.4 6.3 50 332-390 14-74 (99)
56 2e5h_A Zinc finger CCHC-type a 69.6 8 0.00027 31.3 5.7 47 333-388 18-67 (94)
57 1x5t_A Splicing factor 3B subu 69.6 9.5 0.00032 31.0 6.1 48 333-389 7-58 (96)
58 2rs2_A Musashi-1, RNA-binding 69.3 8.9 0.0003 32.6 6.1 48 332-388 26-76 (109)
59 2cqg_A TDP-43, TAR DNA-binding 68.6 9.9 0.00034 31.4 6.1 48 333-389 17-67 (103)
60 4a8x_A RNA-binding protein wit 68.6 7.3 0.00025 31.0 5.1 51 332-391 5-59 (88)
61 1p27_B RNA-binding protein 8A; 68.5 10 0.00034 31.5 6.1 49 332-389 24-75 (106)
62 2dhg_A TRNA selenocysteine ass 68.3 8.3 0.00028 31.9 5.6 49 333-390 11-62 (104)
63 2f3j_A RNA and export factor b 68.2 8.1 0.00028 36.2 6.1 49 332-389 89-139 (177)
64 2fy1_A RNA-binding motif prote 68.0 11 0.00038 32.5 6.5 48 333-389 9-58 (116)
65 1x4h_A RNA-binding protein 28; 67.9 9.3 0.00032 31.9 5.9 49 333-390 17-68 (111)
66 2cpf_A RNA binding motif prote 67.6 5.9 0.0002 32.4 4.5 48 333-389 7-60 (98)
67 4fxv_A ELAV-like protein 1; RN 67.0 11 0.00036 31.8 6.1 48 333-389 21-71 (99)
68 3s7r_A Heterogeneous nuclear r 67.0 13 0.00045 29.6 6.4 50 332-390 12-64 (87)
69 1uaw_A Mouse-musashi-1; RNP-ty 67.0 8.4 0.00029 29.9 5.1 49 333-390 2-53 (77)
70 2dnl_A Cytoplasmic polyadenyla 66.9 7.3 0.00025 33.3 5.1 48 334-390 11-63 (114)
71 2cpz_A CUG triplet repeat RNA- 66.8 9.4 0.00032 32.3 5.7 49 332-389 26-77 (115)
72 2cqc_A Arginine/serine-rich sp 66.4 9.2 0.00031 30.9 5.4 48 333-389 17-67 (95)
73 2d9p_A Polyadenylate-binding p 66.4 8.4 0.00029 31.9 5.2 48 333-389 17-65 (103)
74 1jad_A PLC-beta, phospholipase 66.4 1.2E+02 0.0041 31.0 24.7 39 603-641 192-230 (251)
75 2cqp_A RNA-binding protein 12; 66.1 6.3 0.00021 32.3 4.3 49 332-389 16-67 (98)
76 3v4m_A Splicing factor U2AF 65 66.0 5.1 0.00017 34.6 3.9 58 333-390 7-70 (105)
77 2dgo_A Cytotoxic granule-assoc 66.0 10 0.00035 32.0 5.8 48 333-389 17-67 (115)
78 3bs9_A Nucleolysin TIA-1 isofo 66.0 11 0.00038 29.9 5.7 48 333-389 8-58 (87)
79 3ucg_A Polyadenylate-binding p 65.9 13 0.00045 29.6 6.2 48 333-389 8-58 (89)
80 2lxi_A RNA-binding protein 10; 65.8 7.8 0.00027 32.0 4.9 48 333-389 3-54 (91)
81 2ghp_A U4/U6 snRNA-associated 65.1 9.8 0.00033 37.0 6.2 56 333-398 43-99 (292)
82 1x5o_A RNA binding motif, sing 64.8 11 0.00039 31.7 5.8 50 331-389 25-76 (114)
83 2dgs_A DAZ-associated protein 64.7 15 0.0005 30.2 6.3 56 333-398 12-70 (99)
84 3md3_A Nuclear and cytoplasmic 64.6 12 0.0004 32.6 6.0 48 333-389 2-51 (166)
85 2dgx_A KIAA0430 protein; RRM d 64.2 11 0.00037 31.1 5.5 47 333-389 11-62 (96)
86 2voo_A Lupus LA protein; RNA-b 63.9 11 0.00038 35.7 6.1 50 332-390 110-161 (193)
87 3s8s_A Histone-lysine N-methyl 63.8 14 0.00048 31.8 6.3 48 333-389 8-58 (110)
88 3vkg_A Dynein heavy chain, cyt 63.7 1.9E+02 0.0065 39.1 19.0 10 353-362 1762-1771(3245)
89 2dnz_A Probable RNA-binding pr 63.5 17 0.00058 29.4 6.4 48 333-389 7-57 (95)
90 1h2v_Z 20 kDa nuclear CAP bind 63.4 14 0.00046 33.1 6.4 51 331-390 39-92 (156)
91 2krb_A Eukaryotic translation 63.0 11 0.00036 30.0 5.0 54 333-389 3-57 (81)
92 1wf0_A TDP-43, TAR DNA-binding 63.0 10 0.00036 30.5 5.0 45 334-390 8-53 (88)
93 2dgp_A Bruno-like 4, RNA bindi 62.7 9.7 0.00033 31.6 4.9 48 333-389 15-65 (106)
94 2mss_A Protein (musashi1); RNA 62.3 15 0.00053 28.4 5.8 47 334-389 2-51 (75)
95 1x4b_A Heterogeneous nuclear r 62.3 15 0.00052 31.0 6.2 48 332-388 28-78 (116)
96 1rk8_A CG8781-PA, CG8781-PA pr 62.0 11 0.00038 34.2 5.6 49 331-388 72-123 (165)
97 1x5s_A Cold-inducible RNA-bind 61.8 14 0.00046 30.5 5.6 49 332-389 13-64 (102)
98 3mdf_A Peptidyl-prolyl CIS-tra 61.8 14 0.00047 29.2 5.5 49 333-390 9-60 (85)
99 2fc9_A NCL protein; structure 61.3 12 0.00043 30.7 5.3 47 332-389 16-63 (101)
100 3ex7_B RNA-binding protein 8A; 61.2 14 0.00049 31.6 5.9 50 332-390 23-75 (126)
101 2cqd_A RNA-binding region cont 61.0 17 0.0006 30.7 6.3 47 333-388 19-68 (116)
102 3nmr_A Cugbp ELAV-like family 60.7 12 0.00039 33.0 5.3 49 333-390 5-58 (175)
103 2cq0_A Eukaryotic translation 60.7 9.8 0.00034 31.5 4.6 49 332-389 16-67 (103)
104 1p1t_A Cleavage stimulation fa 60.7 11 0.00038 31.0 4.9 48 333-389 10-60 (104)
105 2x1f_A MRNA 3'-END-processing 60.7 19 0.00064 29.4 6.3 49 333-390 4-55 (96)
106 1x4c_A Splicing factor, argini 60.5 16 0.00056 30.7 6.0 52 332-398 16-68 (108)
107 2lkz_A RNA-binding protein 5; 60.3 14 0.00048 31.3 5.6 49 333-390 11-64 (95)
108 2j76_E EIF-4B, EIF4B, eukaryot 60.2 9.8 0.00034 31.6 4.5 56 332-397 20-78 (100)
109 2jwn_A Embryonic polyadenylate 60.2 14 0.00049 31.5 5.7 51 331-390 36-89 (124)
110 1x4e_A RNA binding motif, sing 60.0 22 0.00076 28.1 6.4 56 333-398 7-65 (85)
111 2ki2_A SS-DNA binding protein 60.0 10 0.00034 30.5 4.4 48 334-390 4-54 (90)
112 3ghg_B Fibrinogen beta chain; 59.9 92 0.0031 34.4 13.1 39 523-564 149-187 (461)
113 1m1j_B Fibrinogen beta chain; 59.8 1.8E+02 0.006 32.1 15.3 23 540-562 168-190 (464)
114 2dnm_A SRP46 splicing factor; 59.7 20 0.00068 29.6 6.3 51 332-391 14-67 (103)
115 4f02_A Polyadenylate-binding p 59.6 9.9 0.00034 35.7 5.0 49 333-390 105-154 (213)
116 1oo0_B CG8781-PA, drosophila Y 59.6 19 0.00066 30.0 6.3 49 333-390 28-79 (110)
117 1l3k_A Heterogeneous nuclear r 59.6 17 0.00059 32.7 6.4 49 332-389 105-156 (196)
118 2dh8_A DAZ-associated protein 59.4 11 0.00036 31.4 4.6 57 333-399 18-77 (105)
119 1fxl_A Paraneoplastic encephal 58.1 18 0.00061 31.4 6.1 48 333-389 4-54 (167)
120 2hvz_A Splicing factor, argini 57.9 17 0.00058 29.9 5.6 55 334-401 3-59 (101)
121 3beg_B Splicing factor, argini 57.7 19 0.00066 30.8 6.1 52 332-398 17-69 (115)
122 2g4b_A Splicing factor U2AF 65 57.6 21 0.00071 31.4 6.4 52 331-391 94-148 (172)
123 3md1_A Nuclear and cytoplasmic 56.5 20 0.00069 28.1 5.6 48 333-389 3-53 (83)
124 2nlw_A Eukaryotic translation 55.9 20 0.00068 30.1 5.8 55 333-391 17-73 (105)
125 2fc8_A NCL protein; structure 55.9 14 0.00047 30.4 4.7 45 333-388 17-63 (102)
126 2m2b_A RNA-binding protein 10; 55.5 9.5 0.00033 33.4 3.8 58 333-400 25-87 (131)
127 2dnq_A RNA-binding protein 4B; 55.2 21 0.00071 28.8 5.6 42 333-388 10-51 (90)
128 3na7_A HP0958; flagellar bioge 55.0 1.7E+02 0.0057 29.0 20.4 29 478-506 20-48 (256)
129 2ku7_A MLL1 PHD3-CYP33 RRM chi 54.9 28 0.00096 30.0 6.7 49 332-389 64-115 (140)
130 2cqb_A Peptidyl-prolyl CIS-tra 54.6 20 0.00069 29.4 5.5 48 333-389 14-64 (102)
131 2kn4_A Immunoglobulin G-bindin 54.6 40 0.0014 29.9 7.8 50 331-389 70-122 (158)
132 1m1j_A Fibrinogen alpha subuni 54.1 2E+02 0.0068 31.9 14.3 37 474-510 84-120 (491)
133 2khc_A Testis-specific RNP-typ 54.0 23 0.00077 30.0 5.9 50 332-390 41-93 (118)
134 2wbr_A GW182, gawky, LD47780P; 53.7 17 0.00059 31.5 5.0 43 335-389 11-53 (89)
135 1b7f_A Protein (SXL-lethal pro 53.5 26 0.00089 30.5 6.4 49 332-389 90-141 (168)
136 1gd2_E Transcription factor PA 53.3 24 0.00081 29.5 5.6 43 486-528 25-67 (70)
137 1iqt_A AUF1, heterogeneous nuc 52.7 16 0.00056 28.1 4.4 55 334-398 2-59 (75)
138 1why_A Hypothetical protein ri 52.4 27 0.00091 28.5 5.9 44 333-389 19-63 (97)
139 1wf1_A RNA-binding protein RAL 51.8 17 0.0006 30.4 4.8 45 333-390 29-73 (110)
140 2ghp_A U4/U6 snRNA-associated 51.5 24 0.00083 34.2 6.4 53 329-389 208-264 (292)
141 2qfj_A FBP-interacting repress 51.5 26 0.00089 32.0 6.3 49 332-389 29-80 (216)
142 2kxn_B Transformer-2 protein h 51.3 20 0.00067 31.7 5.2 48 333-389 48-98 (129)
143 1whx_A Hypothetical protein ri 51.1 26 0.0009 29.8 5.8 46 333-390 12-57 (111)
144 2xnq_A Nuclear polyadenylated 50.6 29 0.00098 28.8 5.8 44 333-389 24-67 (97)
145 2jvr_A Nucleolar protein 3; RN 50.6 22 0.00076 31.0 5.4 47 332-388 29-76 (111)
146 1fjc_A Nucleolin RBD2, protein 50.4 13 0.00043 30.3 3.6 45 333-389 18-63 (96)
147 2cjk_A Nuclear polyadenylated 50.3 30 0.001 30.2 6.2 49 332-389 88-139 (167)
148 1u6f_A Tcubp1, RNA-binding pro 50.1 19 0.00064 31.4 4.8 48 333-389 44-94 (139)
149 2cpi_A CCR4-NOT transcription 50.1 20 0.00069 30.3 4.9 49 332-389 16-73 (111)
150 2div_A TRNA selenocysteine ass 50.0 24 0.00083 28.7 5.3 48 333-389 11-62 (99)
151 3tyt_A Heterogeneous nuclear r 49.5 25 0.00087 33.3 6.0 56 333-398 125-183 (205)
152 1x4g_A Nucleolysin TIAR; struc 49.2 24 0.00084 29.5 5.3 46 332-390 26-72 (109)
153 2dis_A Unnamed protein product 49.0 32 0.0011 28.5 5.9 47 333-388 10-61 (109)
154 2jrs_A RNA-binding protein 39; 48.8 24 0.00082 29.9 5.2 50 332-390 27-79 (108)
155 2ytc_A PRE-mRNA-splicing facto 48.7 28 0.00094 27.5 5.2 43 333-388 14-57 (85)
156 4h22_A Leucine-rich repeat fli 48.7 22 0.00074 32.0 4.9 35 536-570 26-60 (103)
157 2la4_A Nuclear and cytoplasmic 48.6 28 0.00094 28.6 5.4 46 332-390 28-74 (101)
158 2kvi_A Nuclear polyadenylated 48.3 27 0.00091 28.6 5.3 42 334-388 13-54 (96)
159 4emc_A Monopolin complex subun 48.0 93 0.0032 30.6 9.6 49 457-508 4-52 (190)
160 1fxl_A Paraneoplastic encephal 47.6 37 0.0013 29.3 6.4 49 332-389 89-140 (167)
161 1ik9_A DNA repair protein XRCC 47.5 2.2E+02 0.0074 28.1 13.0 62 476-547 125-186 (213)
162 1deq_A Fibrinogen (alpha chain 46.7 2.1E+02 0.0073 30.9 12.9 57 473-532 64-120 (390)
163 3ghg_A Fibrinogen alpha chain; 46.6 94 0.0032 34.9 10.5 78 475-570 84-161 (562)
164 2jvo_A Nucleolar protein 3; nu 46.6 25 0.00084 29.9 4.9 43 332-389 32-75 (108)
165 1nu4_A U1A RNA binding domain; 46.5 14 0.00048 30.0 3.2 48 333-389 10-61 (97)
166 2ayu_A Nucleosome assembly pro 46.4 3.9 0.00013 44.4 -0.2 6 120-125 296-301 (417)
167 2cpd_A Apobec-1 stimulating pr 46.0 33 0.0011 28.1 5.5 45 333-389 17-61 (99)
168 2yh0_A Splicing factor U2AF 65 45.8 33 0.0011 30.8 5.9 52 331-391 114-168 (198)
169 3smz_A Protein raver-1, ribonu 45.5 32 0.0011 33.2 6.1 52 331-390 184-237 (284)
170 1nh2_C Transcription initiatio 45.2 3.7 0.00013 35.3 -0.5 17 243-260 43-59 (79)
171 2qfj_A FBP-interacting repress 45.2 32 0.0011 31.3 5.8 48 332-388 126-176 (216)
172 3vem_A Helicase protein MOM1; 45.1 95 0.0032 28.4 8.6 54 586-639 40-93 (115)
173 2m0f_A Zinc finger and BTB dom 45.0 8.9 0.0003 23.3 1.4 23 250-278 1-23 (29)
174 2cpx_A Hypothetical protein FL 45.0 18 0.0006 30.4 3.7 47 332-389 26-77 (115)
175 2cjk_A Nuclear polyadenylated 45.0 33 0.0011 29.9 5.6 49 333-390 5-56 (167)
176 2pe8_A Splicing factor 45; RRM 44.8 51 0.0017 28.2 6.7 87 333-444 10-100 (105)
177 2i2y_A Fusion protein consists 44.6 32 0.0011 30.4 5.6 47 332-390 74-121 (150)
178 1b7f_A Protein (SXL-lethal pro 44.4 31 0.0011 30.1 5.4 48 333-389 5-55 (168)
179 3pgw_S U1-70K; protein-RNA com 44.4 23 0.00079 37.9 5.4 56 332-397 103-161 (437)
180 1f5n_A Interferon-induced guan 44.1 1.1E+02 0.0038 34.4 10.9 10 289-298 291-300 (592)
181 2cpj_A Non-POU domain-containi 44.1 36 0.0012 27.8 5.4 45 333-390 17-62 (99)
182 3p5t_L Cleavage and polyadenyl 43.7 22 0.00076 28.8 4.0 54 334-397 4-62 (90)
183 1fje_B Nucleolin RBD12, protei 42.8 36 0.0012 30.1 5.5 47 332-389 100-146 (175)
184 2kvh_A Zinc finger and BTB dom 42.2 11 0.00039 22.9 1.6 22 250-277 2-23 (27)
185 2e5g_A U6 snRNA-specific termi 42.2 60 0.0021 26.3 6.5 54 333-398 10-63 (94)
186 2lea_A Serine/arginine-rich sp 42.1 28 0.00096 30.8 4.7 48 332-388 48-98 (135)
187 2hzc_A Splicing factor U2AF 65 41.3 39 0.0013 26.6 5.1 45 332-389 7-63 (87)
188 1jmt_A Splicing factor U2AF 35 41.1 26 0.00089 29.9 4.2 36 357-392 43-81 (104)
189 1sjq_A Polypyrimidine tract-bi 41.1 35 0.0012 29.9 5.1 45 332-389 17-62 (105)
190 2cq1_A PTB-like protein L; RRM 41.1 43 0.0015 28.6 5.6 44 333-389 17-61 (101)
191 1l3k_A Heterogeneous nuclear r 40.3 39 0.0013 30.3 5.4 47 333-388 15-64 (196)
192 2ad9_A Polypyrimidine tract-bi 39.7 45 0.0015 29.7 5.7 46 332-390 32-78 (119)
193 2dgu_A Heterogeneous nuclear r 39.7 36 0.0012 28.1 4.8 43 333-389 13-55 (103)
194 2m0d_A Zinc finger and BTB dom 39.5 13 0.00044 22.6 1.5 23 250-278 2-24 (30)
195 2dgt_A RNA-binding protein 30; 39.4 52 0.0018 26.5 5.6 41 333-388 12-53 (92)
196 1p7a_A BF3, BKLF, kruppel-like 39.2 13 0.00045 24.3 1.6 24 249-278 9-32 (37)
197 3s6e_A RNA-binding protein 39; 39.1 32 0.0011 30.2 4.6 88 333-443 9-98 (114)
198 2d9o_A DNAJ (HSP40) homolog, s 39.0 32 0.0011 29.5 4.5 38 350-390 27-65 (100)
199 2e44_A Insulin-like growth fac 38.7 52 0.0018 26.6 5.5 47 332-389 16-64 (96)
200 1wex_A Hypothetical protein (r 38.6 56 0.0019 27.9 6.0 44 332-388 16-60 (104)
201 1m1j_C Fibrinogen gamma chain; 38.5 1.2E+02 0.004 32.9 9.6 51 459-512 31-92 (409)
202 3viq_B Mating-type switching p 38.2 28 0.00097 30.2 3.9 15 514-528 38-52 (85)
203 3q2s_C Cleavage and polyadenyl 37.8 45 0.0015 32.3 5.8 56 333-398 70-130 (229)
204 3pgw_A U1-A; protein-RNA compl 37.8 40 0.0014 32.5 5.4 47 332-390 208-255 (282)
205 3i1m_R 30S ribosomal protein S 37.6 24 0.00082 29.9 3.3 44 252-297 9-61 (75)
206 3md3_A Nuclear and cytoplasmic 37.5 52 0.0018 28.4 5.6 48 333-389 89-139 (166)
207 2cqh_A IGF-II mRNA-binding pro 37.1 25 0.00084 28.4 3.3 44 334-390 11-55 (93)
208 3iyk_A VP5; icosahedral virus; 36.2 5E+02 0.017 29.1 14.7 117 484-621 108-225 (526)
209 2yo3_A General control protein 36.1 51 0.0018 34.0 6.1 54 473-526 213-266 (268)
210 2dnp_A RNA-binding protein 14; 36.0 50 0.0017 26.5 4.9 42 333-389 11-53 (90)
211 3egn_A RNA-binding protein 40; 35.5 42 0.0014 29.4 4.8 48 333-389 47-102 (143)
212 1m1j_B Fibrinogen beta chain; 35.4 4.9E+02 0.017 28.7 14.4 17 481-497 126-142 (464)
213 2els_A Zinc finger protein 406 35.0 17 0.00058 23.7 1.6 24 249-278 7-30 (36)
214 2kvf_A Zinc finger and BTB dom 34.8 17 0.00058 22.1 1.6 23 250-278 2-24 (28)
215 1rik_A E6APC1 peptide; E6-bind 34.2 17 0.00059 22.1 1.5 22 251-278 2-23 (29)
216 2m0e_A Zinc finger and BTB dom 34.1 18 0.00062 21.7 1.6 21 251-277 2-22 (29)
217 1qm9_A Polypyrimidine tract-bi 34.0 47 0.0016 30.1 5.0 54 333-398 5-59 (198)
218 1klr_A Zinc finger Y-chromosom 33.4 20 0.00069 21.7 1.7 22 251-278 2-23 (30)
219 1fj7_A Nucleolin RBD1, protein 33.3 16 0.00055 30.0 1.6 57 332-398 18-76 (101)
220 3n9u_C Cleavage and polyadenyl 32.8 57 0.0019 29.8 5.3 49 332-389 56-109 (156)
221 2vqe_R 30S ribosomal protein S 32.7 32 0.0011 29.9 3.3 45 251-297 19-72 (88)
222 3a7p_A Autophagy protein 16; c 32.6 3.3E+02 0.011 25.9 13.7 52 518-570 93-144 (152)
223 3pq1_A Poly(A) RNA polymerase; 32.4 29 0.00099 38.1 3.8 36 353-390 65-100 (464)
224 1ard_A Yeast transcription fac 32.1 18 0.0006 21.9 1.3 21 251-277 2-22 (29)
225 2elr_A Zinc finger protein 406 32.0 19 0.00067 23.2 1.5 23 249-277 7-29 (36)
226 2elt_A Zinc finger protein 406 31.6 20 0.00068 23.2 1.5 23 249-277 7-29 (36)
227 3r27_A HnRNP L, heterogeneous 31.6 87 0.003 27.1 6.0 44 333-389 23-67 (100)
228 2elp_A Zinc finger protein 406 31.6 23 0.00078 23.2 1.9 23 249-277 7-30 (37)
229 2adc_A Polypyrimidine tract-bi 31.4 56 0.0019 30.9 5.2 46 333-389 36-82 (229)
230 2kvg_A Zinc finger and BTB dom 31.0 15 0.00052 22.5 0.8 22 250-277 2-23 (27)
231 2yu5_A Zinc finger protein 473 30.5 26 0.0009 23.9 2.1 25 248-278 9-33 (44)
232 2elx_A Zinc finger protein 406 30.0 22 0.00075 22.7 1.5 24 249-278 5-28 (35)
233 3iv1_A Tumor susceptibility ge 29.7 2.6E+02 0.0091 23.8 8.9 38 501-544 7-44 (78)
234 3ue2_A Poly(U)-binding-splicin 29.7 52 0.0018 29.0 4.4 88 333-445 22-116 (118)
235 2eoy_A Zinc finger protein 473 29.4 28 0.00097 24.1 2.1 24 249-278 10-33 (46)
236 2oqq_A Transcription factor HY 29.3 1.3E+02 0.0044 23.1 5.7 32 488-519 8-39 (42)
237 1srk_A Zinc finger protein ZFP 29.1 25 0.00087 22.6 1.7 24 249-278 5-28 (35)
238 2eou_A Zinc finger protein 473 29.0 26 0.00089 24.0 1.9 23 249-277 10-32 (44)
239 2ve7_A Kinetochore protein HEC 28.9 1.1E+02 0.0037 31.7 7.2 76 534-617 144-220 (315)
240 1x4d_A Matrin 3; structural ge 28.7 57 0.002 28.1 4.3 46 332-390 16-63 (102)
241 2ykt_A Brain-specific angiogen 28.2 3.5E+02 0.012 27.2 10.6 46 475-520 102-151 (253)
242 1paa_A Yeast transcription fac 28.1 23 0.0008 21.6 1.4 20 251-276 2-21 (30)
243 3okq_A BUD site selection prot 27.9 3.9E+02 0.013 25.2 10.0 31 473-503 51-81 (141)
244 4f02_A Polyadenylate-binding p 27.7 87 0.003 29.2 5.8 49 333-390 17-68 (213)
245 3ghg_C Fibrinogen gamma chain; 27.6 6.2E+02 0.021 27.4 13.4 73 458-536 30-113 (411)
246 2elq_A Zinc finger protein 406 27.6 28 0.00096 22.6 1.7 23 249-277 7-29 (36)
247 3nmd_A CGMP dependent protein 27.5 95 0.0032 26.3 5.2 46 455-500 19-64 (72)
248 2enh_A Zinc finger protein 28 27.2 31 0.0011 23.9 2.0 24 249-278 10-33 (46)
249 1wg1_A KIAA1579 protein, homol 27.1 65 0.0022 25.8 4.2 42 334-389 8-50 (88)
250 2eoh_A Zinc finger protein 28 26.9 31 0.0011 23.8 2.0 24 249-278 10-33 (46)
251 1znf_A 31ST zinc finger from X 26.5 24 0.00083 21.0 1.2 22 251-278 1-22 (27)
252 2elv_A Zinc finger protein 406 26.5 30 0.001 22.4 1.7 24 249-278 7-30 (36)
253 2eon_A ZFP-95, zinc finger pro 26.2 29 0.00098 24.1 1.7 24 249-278 10-33 (46)
254 2lcw_A RNA-binding protein FUS 32.1 14 0.00048 31.3 0.0 55 334-398 10-75 (116)
255 2em2_A Zinc finger protein 28 26.1 32 0.0011 23.8 1.9 24 248-277 9-32 (46)
256 2em7_A Zinc finger protein 224 26.1 33 0.0011 23.6 2.0 24 249-278 10-33 (46)
257 1m1j_C Fibrinogen gamma chain; 26.0 6.4E+02 0.022 27.2 12.8 38 607-645 98-135 (409)
258 1m1j_A Fibrinogen alpha subuni 25.9 7.2E+02 0.024 27.6 14.4 83 436-534 38-120 (491)
259 2ytp_A Zinc finger protein 484 25.6 34 0.0012 23.6 2.0 24 249-278 10-33 (46)
260 2epx_A Zinc finger protein 28 25.3 39 0.0013 23.2 2.2 24 249-278 10-33 (47)
261 1x5p_A Negative elongation fac 25.2 69 0.0024 26.1 4.1 35 352-389 25-59 (97)
262 2emb_A Zinc finger protein 473 25.1 34 0.0012 23.3 1.9 24 249-278 10-33 (44)
263 2lvr_A Zinc finger and BTB dom 30.9 15 0.00052 22.4 0.0 23 250-278 2-24 (30)
264 3pgw_A U1-A; protein-RNA compl 24.8 1E+02 0.0035 29.6 5.9 48 333-390 11-63 (282)
265 2j8a_A Histone-lysine N-methyl 24.8 1.9E+02 0.0065 27.0 7.3 37 352-388 18-57 (136)
266 2em8_A Zinc finger protein 224 24.7 36 0.0012 23.5 1.9 25 248-278 9-33 (46)
267 2epv_A Zinc finger protein 268 24.7 37 0.0013 23.3 2.0 24 249-278 10-33 (44)
268 1qm9_A Polypyrimidine tract-bi 24.6 89 0.0031 28.2 5.1 46 332-389 121-168 (198)
269 2emi_A Zinc finger protein 484 24.5 36 0.0012 23.4 1.9 24 249-278 10-33 (46)
270 3lay_A Zinc resistance-associa 24.5 4.4E+02 0.015 25.2 10.1 16 525-540 71-86 (175)
271 3mjh_B Early endosome antigen 24.5 31 0.0011 25.2 1.5 20 251-276 5-24 (34)
272 2elo_A Zinc finger protein 406 24.4 23 0.00077 23.1 0.8 24 249-278 7-30 (37)
273 2ytf_A Zinc finger protein 268 24.3 37 0.0012 23.3 1.9 24 249-278 10-33 (46)
274 1sjr_A Polypyrimidine tract-bi 24.0 81 0.0028 29.9 4.8 47 334-390 49-95 (164)
275 1njq_A Superman protein; zinc- 23.9 33 0.0011 22.8 1.6 24 249-278 4-27 (39)
276 1x4f_A Matrin 3; structural ge 23.8 90 0.0031 27.5 4.8 48 331-390 25-73 (112)
277 2elz_A Zinc finger protein 224 23.8 37 0.0013 23.5 1.9 25 248-278 9-33 (46)
278 2epz_A Zinc finger protein 28 23.8 39 0.0013 23.2 2.0 24 249-278 10-33 (46)
279 2enf_A Zinc finger protein 347 23.6 38 0.0013 23.3 1.9 24 249-278 10-33 (46)
280 2ytb_A Zinc finger protein 32; 23.6 35 0.0012 22.8 1.7 24 249-278 9-32 (42)
281 3iyk_A VP5; icosahedral virus; 23.5 8.2E+02 0.028 27.4 18.0 40 593-633 176-215 (526)
282 2go8_A Hypothetical protein YQ 23.4 94 0.0032 28.1 4.9 102 331-440 11-115 (122)
283 2a3j_A U1 small nuclear ribonu 23.2 1.2E+02 0.0042 26.8 5.6 47 333-389 31-82 (127)
284 3pwf_A Rubrerythrin; non heme 23.2 50 0.0017 31.3 3.2 28 228-258 118-145 (170)
285 2lvu_A Zinc finger and BTB dom 28.9 17 0.00059 21.8 0.0 21 251-277 2-22 (26)
286 2elm_A Zinc finger protein 406 23.1 33 0.0011 22.7 1.4 22 249-276 7-28 (37)
287 1f5n_A Interferon-induced guan 23.1 8.3E+02 0.028 27.4 20.9 15 600-614 534-548 (592)
288 3smz_A Protein raver-1, ribonu 23.0 97 0.0033 29.8 5.3 45 333-390 24-68 (284)
289 2eq0_A Zinc finger protein 347 22.9 41 0.0014 23.1 1.9 25 248-278 9-33 (46)
290 2lvt_A Zinc finger and BTB dom 28.6 18 0.00061 22.2 0.0 22 251-278 2-23 (29)
291 2en3_A ZFP-95, zinc finger pro 22.8 44 0.0015 22.9 2.1 23 249-277 10-32 (46)
292 2enc_A Zinc finger protein 224 22.8 39 0.0013 23.2 1.8 24 249-278 10-33 (46)
293 2emg_A Zinc finger protein 484 22.7 39 0.0013 23.2 1.8 24 249-278 10-33 (46)
294 2ely_A Zinc finger protein 224 22.6 48 0.0017 22.8 2.3 24 249-278 10-33 (46)
295 2yti_A Zinc finger protein 347 22.6 39 0.0013 23.2 1.8 24 249-278 10-33 (46)
296 2yts_A Zinc finger protein 484 22.4 41 0.0014 23.0 1.9 24 249-278 10-33 (46)
297 2ept_A Zinc finger protein 32; 22.3 39 0.0013 22.6 1.7 24 249-278 8-31 (41)
298 2hl7_A Cytochrome C-type bioge 22.3 25 0.00084 30.4 0.8 11 250-260 25-35 (84)
299 1rim_A E6APC2 peptide; E6-bind 22.2 37 0.0013 22.0 1.5 22 251-278 2-23 (33)
300 1lko_A Rubrerythrin all-iron(I 22.2 34 0.0012 32.8 1.8 30 228-258 133-162 (191)
301 2ep0_A Zinc finger protein 28 22.1 42 0.0014 23.1 1.9 25 248-278 9-33 (46)
302 3i00_A HIP-I, huntingtin-inter 22.1 3.7E+02 0.013 24.4 8.5 23 473-495 12-34 (120)
303 2eom_A ZFP-95, zinc finger pro 21.9 47 0.0016 23.0 2.1 23 249-277 10-32 (46)
304 2em3_A Zinc finger protein 28 21.8 45 0.0015 22.9 1.9 24 249-278 10-33 (46)
305 2adc_A Polypyrimidine tract-bi 21.8 1.4E+02 0.0049 28.0 6.1 46 332-389 152-199 (229)
306 2ytq_A Zinc finger protein 268 21.7 42 0.0014 23.1 1.8 24 249-278 10-33 (46)
307 2en9_A Zinc finger protein 28 21.7 39 0.0013 23.3 1.7 24 249-278 10-33 (46)
308 2i1j_A Moesin; FERM, coiled-co 21.6 1.2E+02 0.0042 33.8 6.4 33 529-562 343-375 (575)
309 2em9_A Zinc finger protein 224 21.6 45 0.0015 22.8 1.9 24 249-278 10-33 (46)
310 2el6_A Zinc finger protein 268 21.5 45 0.0015 23.0 1.9 24 249-278 10-33 (46)
311 2em4_A Zinc finger protein 28 21.5 45 0.0015 23.0 1.9 23 249-277 10-32 (46)
312 2eq1_A Zinc finger protein 347 21.5 40 0.0014 23.1 1.7 24 249-278 10-33 (46)
313 2en7_A Zinc finger protein 268 21.4 39 0.0013 22.9 1.5 24 249-278 10-33 (44)
314 3tyt_A Heterogeneous nuclear r 21.4 1.4E+02 0.0049 28.1 6.0 47 333-391 6-54 (205)
315 2eow_A Zinc finger protein 347 21.3 41 0.0014 23.1 1.7 23 249-277 10-32 (46)
316 2yrj_A Zinc finger protein 473 21.2 48 0.0016 22.7 2.0 24 249-278 10-33 (46)
317 2emz_A ZFP-95, zinc finger pro 21.2 48 0.0016 22.8 2.0 23 249-277 10-32 (46)
318 2eoz_A Zinc finger protein 473 21.2 35 0.0012 23.6 1.3 23 249-277 10-32 (46)
319 3uk3_C Zinc finger protein 217 21.1 41 0.0014 24.0 1.7 23 249-277 30-52 (57)
320 2kw0_A CCMH protein; oxidoredu 21.1 24 0.00081 30.9 0.4 11 250-260 22-32 (90)
321 2en2_A B-cell lymphoma 6 prote 21.0 37 0.0013 22.8 1.4 24 249-278 9-32 (42)
322 2eof_A Zinc finger protein 268 20.9 42 0.0014 22.7 1.6 24 249-278 10-33 (44)
323 2em5_A ZFP-95, zinc finger pro 20.8 47 0.0016 22.9 1.9 24 249-278 10-33 (46)
324 2emf_A Zinc finger protein 484 20.7 46 0.0016 22.9 1.8 24 249-278 10-33 (46)
325 2ep3_A Zinc finger protein 484 20.7 46 0.0016 22.8 1.9 24 249-278 10-33 (46)
326 2el5_A Zinc finger protein 268 20.7 40 0.0014 22.6 1.5 24 249-278 8-31 (42)
327 2eme_A Zinc finger protein 473 20.7 45 0.0015 22.8 1.8 24 249-278 10-33 (46)
328 3u0c_A Invasin IPAB, 62 kDa an 20.7 6E+02 0.02 24.8 18.0 67 553-635 130-197 (201)
329 2ene_A Zinc finger protein 347 20.6 46 0.0016 22.9 1.8 24 249-278 10-33 (46)
330 2ysp_A Zinc finger protein 224 20.6 38 0.0013 23.3 1.4 24 249-278 10-33 (46)
331 2ytm_A Zinc finger protein 28 20.6 41 0.0014 23.3 1.6 23 249-277 10-32 (46)
332 2epc_A Zinc finger protein 32; 20.4 43 0.0015 22.4 1.6 24 249-278 9-32 (42)
333 2yth_A Zinc finger protein 224 20.3 48 0.0016 22.8 1.9 24 249-278 10-33 (46)
334 3ghg_C Fibrinogen gamma chain; 20.3 4.7E+02 0.016 28.3 10.3 86 473-562 35-127 (411)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-59 Score=449.16 Aligned_cols=167 Identities=20% Similarity=0.367 Sum_probs=157.4
Q ss_pred CCCCCeeecCCeEEEEecccccCCCCcccccChHHHHHHh--hccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHH
Q 006189 322 TEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYF--ILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL 399 (657)
Q Consensus 322 ~~kDeliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~l--sgF~p~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rL 399 (657)
++++++|||||||||+||+|+.++||+++|||+++|+++| ++|+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 6789999999999999999987788999999999999977 89999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCccccccc-hhccccccHHHHHHHHHhhchhhhHHH
Q 006189 400 HKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQL 478 (657)
Q Consensus 400 ekhFe~qg~GRkdW~~~~r~~~~~pG~~~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEiv~E~~Rqm~k~nqlv 478 (657)
|+||+.+||||+||. .++. .+++||||||++|||++.++ ||+| ||+|+||||+||+.|..| +++++|
T Consensus 83 ek~Fe~~~~GK~dW~--~~~~-----~~~~lyGW~Ar~dDy~s~~~--iG~~Lrk~gdLKTv~~i~~E~~r---k~~~lv 150 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWL--KKDG-----PKLGLYGWIARADDYNGNNI--IGENLRKTGDLKTIAELTEEEAR---KQELLV 150 (172)
T ss_dssp HHHHHHTTCSHHHHT--CSSS-----CCCSCEEEECBHHHHHSSSH--HHHHHHTTCEEEEHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHcCCCHHHHh--hCCC-----CCCceEEEecccccccCCCh--HHHHHHHcCCcccHHHHHHHHHH---HHHHHH
Confidence 999999999999998 4444 38999999999999999999 9999 999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 006189 479 IYLKNRVVKEQRHSKALEATFS 500 (657)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~~ 500 (657)
++|+|+|++||++|++||++||
T Consensus 151 ~~L~~~ie~kn~~l~ele~k~~ 172 (172)
T 4e8u_A 151 QNLRQLVEEKKKDMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.71 E-value=1.1 Score=48.63 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=5.2
Q ss_pred HHHHHHHHHHh
Q 006189 635 DAELTQLMEKY 645 (657)
Q Consensus 635 ~~~l~~lm~k~ 645 (657)
.+++.+|++|-
T Consensus 571 ~~~~~~l~~~~ 581 (597)
T 3oja_B 571 RQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 34455555543
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.11 E-value=3.6 Score=44.55 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=12.8
Q ss_pred HHHHHHhHhHHHHHHHhHHHHHHhhhhhHHH
Q 006189 607 RLIKFHGEKMDAMRRRHWEEEVELEKGFDAE 637 (657)
Q Consensus 607 kL~~~h~~k~~~lkkr~~e~~~~leke~~~~ 637 (657)
+.+++-.+...+++.++.+.+-.+.+-|++.
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~ 588 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAKKNRNPDTR 588 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3333444445555555555555555555543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.31 E-value=7.7 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHhhhhhHHHHH
Q 006189 618 AMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 618 ~lkkr~~e~~~~leke~~~~l~ 639 (657)
.++.+.-++..+|+.+++++..
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1056 TMEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666777777766654
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.90 E-value=17 Score=36.22 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 006189 626 EEVELEKGFDAELTQLME 643 (657)
Q Consensus 626 ~~~~leke~~~~l~~lm~ 643 (657)
++-+|...++..|..+-+
T Consensus 165 ~r~~l~~~i~~~lL~~Ye 182 (256)
T 3na7_A 165 KKEDLVEKTEPKIYSFYE 182 (256)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 344455555555554443
No 6
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.39 E-value=0.49 Score=40.42 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=44.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++..- +.++|++.|+.|.++.|+.++++.|. +|++.|+|... ..-..|+.
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~ 73 (102)
T 1wez_A 16 HCVHMRGLPYRA---------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATH-EDAVAAMA 73 (102)
T ss_dssp CEEEEESCCTTC---------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSS-HHHHHHHT
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCH-HHHHHHHH
Confidence 567789987633 57889999999999999999988775 89999999864 33444543
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.49 E-value=9.6 Score=42.61 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRE 508 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r 508 (657)
.-.+.|+.|+++++.-++..+..+.-+..+.+.|+.
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~ 96 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRG 96 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 444566666666666666666666666655555543
No 8
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.50 E-value=1.6 Score=36.37 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=39.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++...+..+++|++.|.|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 34668898753 3578899999999887 6777888888999999999873
No 9
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=85.61 E-value=2.2 Score=38.99 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHH
Q 006189 593 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQ 640 (657)
Q Consensus 593 ~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~ 640 (657)
++. |++++--+.+.++|.||+++..|+-.+-.|.-++-+++|..|..
T Consensus 37 L~~-ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe 83 (115)
T 3vem_A 37 FLH-ELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHE 83 (115)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 88888888888888888888888888777777777776665543
No 10
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.57 E-value=1.7 Score=37.91 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=43.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++..- +..+|++.|+.|....|+.++++.|. +|++.|.|...- ....|+.
T Consensus 17 ~~v~V~nLp~~~---------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~ 74 (109)
T 2dnn_A 17 LYVSVHGMPFSA---------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQ-DTFEALK 74 (109)
T ss_dssp HEEEEECCCSSC---------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHH-HHHHHHH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHH-HHHHHHh
Confidence 468899987633 46789999999977789999988875 899999998742 3334443
No 11
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.54 E-value=1.8 Score=37.21 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=37.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCC-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQG-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--v~~l~g~~G-H~G~aVV~F~~ 388 (657)
++.|-|++... +..+|++.|+.|..+. |+.++.+.| ++|++.|.|..
T Consensus 17 ~l~V~nLp~~~---------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 17 CAHITNIPFSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 66 (114)
T ss_dssp EEEEESCCTTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS
T ss_pred EEEEeCcCCcC---------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC
Confidence 46688987533 4678999999998875 888888877 48999999985
No 12
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=83.39 E-value=1.9 Score=36.61 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=43.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCCCccchHHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAERL 399 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~rL 399 (657)
.++.|-|++... +..+|++.|+.|.+ ..|+.++++.|. +|++.|.|.. -..-..|+.+
T Consensus 12 ~~l~V~nLp~~~---------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 74 (107)
T 2lmi_A 12 FLIRAQGLPWSC---------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK 74 (107)
T ss_dssp CEEEEECCCSSC---------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh
Confidence 456788987533 46789999999887 578888888774 8999999975 4455556554
No 13
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.38 E-value=2.3 Score=34.53 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=41.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
.++.|-|++... +..+|++.|+.|....++..++..|. +|++.|.|.. -..-..|+.
T Consensus 11 ~~l~v~nLp~~~---------t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~ 68 (91)
T 2dgw_A 11 HTVKLRGAPFNV---------TEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK 68 (91)
T ss_dssp CEEEEECCCSSC---------CHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred cEEEEECCCCCC---------CHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence 456788987532 57789999999966688888886664 8999999985 334444544
No 14
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.30 E-value=2.1 Score=35.59 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=38.9
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++......++.|++.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cqi_A 16 RTLYVGNLSRD---------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEH 65 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSH
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCH
Confidence 35678898752 3578899999999987 4777787778899999999853
No 15
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.79 E-value=2.3 Score=35.85 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCCC-cceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--v~~l~g~~GH-~G~aVV~F~~ 388 (657)
..+.|-|++... +..+|++.|+.|.++. ++.++...|. +|++.|+|..
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 16 GFVRLRGLPFGC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66 (104)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC
Confidence 457788987533 5778999999999875 6677776664 8999999976
No 16
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=82.54 E-value=2.2 Score=38.49 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=42.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc--eeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~--kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
++.|-|++..- +..+|++.|+.|..+ .|+.++++.|. +|++.|+|...- ....|+.
T Consensus 44 ~lfVgnLp~~~---------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e-~A~~Al~ 102 (126)
T 2hgm_A 44 FVRLRGLPFGC---------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQE-LAEKALG 102 (126)
T ss_dssp EEEEECCCTTC---------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTT-HHHHHHT
T ss_pred EEEEeCCCCCC---------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHH-HHHHHHH
Confidence 47788987633 577899999999777 78889888875 899999998754 2334443
No 17
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.54 E-value=1.5 Score=39.27 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.3
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-----eeeeccCCCCC-cceEEEEeCCCccchHHHH
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGH-RGMSVLIFESSAGGYLEAE 397 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-----kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~ 397 (657)
+..+.|-|++..- +..+|++.|+.|+++ .|+.+++..|. +|++.|+|...- ....|+
T Consensus 23 ~~~v~V~nLp~~~---------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al 85 (123)
T 2dha_A 23 QVIVRMRGLPFTA---------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNAL 85 (123)
T ss_dssp CCEEEECSCCTTC---------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHH
T ss_pred CCEEEEeCCCCCC---------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHH
Confidence 3567788987533 577899999999874 68888887775 899999998743 233444
No 18
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.13 E-value=2.2 Score=37.03 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=43.3
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCCCccchHHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAERL 399 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~rL 399 (657)
.++.|-|++..- +..+|++.|+.|.+ ..|+.++++.|. +|++.|.|.. -..-..|+.+
T Consensus 18 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 80 (118)
T 2db1_A 18 YVVKLRGLPWSC---------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKK 80 (118)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGG
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 457788987533 57789999999987 578888888875 8999999975 3444455543
No 19
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=81.76 E-value=1.2 Score=40.71 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=39.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH-~G~aVV~F~~ 388 (657)
.++.|-|++... +.++|++.|+.|.++.|+.++++.|. +|++.|+|..
T Consensus 47 ~~lfV~nLp~~~---------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 47 HCVHMRGLPYKA---------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCEECCSCCTTC---------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCC
Confidence 356788887533 57889999999999999999998875 8999999974
No 20
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=80.31 E-value=3.3 Score=34.23 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
|+.+.|-|++.. .+.+.|++.|+.|+++ .++... .++|++.|.|...-
T Consensus 11 ~~~l~V~~Lp~~---------~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED---------MTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHH
Confidence 566778888653 3578899999999986 455554 37899999998743
No 21
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=80.23 E-value=3.4 Score=33.64 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=38.9
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCcc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAG 391 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~dws 391 (657)
..+.|-|++.. .+..+|++.|+.|.++ .++...++.|. +|++.|.|...-.
T Consensus 17 ~~l~v~nlp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 17 RTVFVGNLEAR---------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp GEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 35678898753 3577899999999887 56777776665 8999999987543
No 22
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=80.08 E-value=56 Score=33.38 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHH
Q 006189 598 MEEFVAARDRLIKFHGEKMDAM 619 (657)
Q Consensus 598 ~e~f~ae~~kL~~~h~~k~~~l 619 (657)
+.+||.+|..|...+.+...+|
T Consensus 176 ike~veerkrl~~kQ~k~qEkL 197 (251)
T 1jad_A 176 IQEVVQTIKLLTEKTARYQQKL 197 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677766666333333333
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.90 E-value=2 Score=37.06 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=38.4
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
+.|-|++.. .+...|++.|+.|.++ .|+.+....++.|++.|.|..--
T Consensus 8 lfV~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~ 56 (115)
T 4f25_A 8 IFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 56 (115)
T ss_dssp EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHH
T ss_pred EEECCCCCC---------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHH
Confidence 567888653 3578899999999997 57888888788999999998743
No 24
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.55 E-value=3.9 Score=34.52 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=37.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce---------eeeccCC-CCC-cceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGP-QGH-RGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------v~~l~g~-~GH-~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+...|++.|+.|.++. ++..+++ .|. +|++.|.|..-
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 16 SAIYVQGLNDS---------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CEEEEcCCCCC---------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 45778898753 35778999999999987 7777774 344 89999999864
No 25
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.78 E-value=3.7 Score=35.00 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCcc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG 391 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dws 391 (657)
.+.|-|++.. .+..+|++.|+.|+++ .++...+..+..|++.|.|...-.
T Consensus 31 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~ 81 (109)
T 2err_A 31 RLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 81 (109)
T ss_dssp EEEEESCCTT---------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred EEEEECCCCc---------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence 4667888642 3578899999999887 577777777789999999987543
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.28 E-value=4.7 Score=33.91 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++....+.....+.|++.|.|...
T Consensus 23 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~ 71 (109)
T 1x4a_A 23 CRIYVGNLPPD---------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDP 71 (109)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCH
Confidence 45778898752 35788999999999886444444445789999999764
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.96 E-value=1.2e+02 Score=40.84 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=10.8
Q ss_pred HHHHHhHhHHHHHHHhHH
Q 006189 608 LIKFHGEKMDAMRRRHWE 625 (657)
Q Consensus 608 L~~~h~~k~~~lkkr~~e 625 (657)
.+++-++++++|+.+|-+
T Consensus 2036 ~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555667777766654
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=77.95 E-value=4.5 Score=33.57 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=38.0
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
+-.+.|-|++.. .+...|++.|+.|.++ .++...++.|. .|++.|.|...
T Consensus 15 ~~~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 15 DRKLFVGMLNKQ---------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 66 (105)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH
Confidence 455778898753 2577899999999886 56667776665 79999999874
No 29
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.25 E-value=3.3 Score=34.24 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=37.3
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
..+.|-|++.. .+...|++.|+.|.++.++.+++ .+.|++.|.|...-
T Consensus 20 ~~l~V~nL~~~---------~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 20 ADVYVGNLPRD---------ARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDSA 67 (97)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSHH
T ss_pred CEEEEeCCCCc---------CcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCHH
Confidence 36778898642 35788999999999988776664 56899999998743
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.89 E-value=4.7 Score=33.28 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++...++.|. +|++.|.|...
T Consensus 18 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 18 HKLFISGLPFS---------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENE 68 (100)
T ss_dssp SCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCH
Confidence 34678898753 3578899999999986 56677776554 79999999763
No 31
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=75.56 E-value=3.7 Score=36.25 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=38.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++......|. +|++.|.|...-
T Consensus 97 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 97 KLFIGMISKK---------CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred eEEEcCCCCc---------CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 4677888652 3578899999999886 56777777776 899999998743
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=75.07 E-value=5.5 Score=33.19 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=38.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+...|++.|..|.++ .++......|. .|++.|.|..-
T Consensus 30 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 30 GKLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 35678898653 3578899999999887 67777777775 89999999853
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.76 E-value=5 Score=33.45 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCC--C-CcceEEEEeCCCccchHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--G-HRGMSVLIFESSAGGYLEAE 397 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~--G-H~G~aVV~F~~dwsGf~nA~ 397 (657)
..+.|-|++.. .+.++|++.|+.|....|+....+. | +.|++.|.|...- .-..|+
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~-~a~~A~ 74 (104)
T 1wi8_A 16 YTAFLGNLPYD---------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLD-SLLSAL 74 (104)
T ss_dssp EEEEEESCCSS---------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHH-HHHHHH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHH-HHHHHH
Confidence 56778898753 3578899999999855777777764 4 4899999997633 334444
No 34
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.57 E-value=5.3 Score=33.67 Aligned_cols=48 Identities=31% Similarity=0.461 Sum_probs=37.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+.++.|. .|++.|.|..-
T Consensus 17 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 17 TVFVANLDYK---------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 4668898752 3578899999999886 56777777665 89999999863
No 35
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=74.32 E-value=6.3 Score=33.95 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=37.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++..+...| ++|++.|.|..-
T Consensus 37 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 37 KLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 5678888642 3578899999999876 5777777766 489999999864
No 36
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.07 E-value=7.9 Score=32.73 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=42.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERLH 400 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dwsGf~nA~rLe 400 (657)
-.+.|-|++.. .+..+|++.|+.|..+ .|+.+..+. | +.|++.|.|.. -..-..|+.|+
T Consensus 26 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~ 87 (114)
T 2cq4_A 26 RTVFCMQLAAR---------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLT 87 (114)
T ss_dssp TEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcC
Confidence 45678898753 3577899999999886 466666664 3 58999999965 44455566544
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.73 E-value=7 Score=32.06 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=35.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++....+ .| +.|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 10 RLFVRNLSYT---------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 4668888653 3577899999999986 46666665 34 479999999874
No 38
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.43 E-value=18 Score=43.50 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=14.3
Q ss_pred CCcceEEEEeCCC----ccchHHH
Q 006189 377 GHRGMSVLIFESS----AGGYLEA 396 (657)
Q Consensus 377 GH~G~aVV~F~~d----wsGf~nA 396 (657)
+...|.|.+|+++ ..||.+-
T Consensus 576 ~~~~F~i~Hyag~V~Y~~~gfl~k 599 (1184)
T 1i84_S 576 DKTEFCILHYAGKVTYNASAWLTK 599 (1184)
T ss_dssp TTCEEEEECSSCEEEEECTTHHHH
T ss_pred CCCcEEEECCCceEEeccCCchhh
Confidence 4567888888875 5677654
No 39
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=73.32 E-value=4.9 Score=36.48 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=41.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kv~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++..- +..+|++.|+.|.+ ..|+.++++.|. +|++.|.|... .....|+.
T Consensus 45 ~~lfVgnLp~~~---------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~-e~a~~Al~ 106 (136)
T 2hgl_A 45 FVVKLRGLPWSC---------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE-DDVKMALK 106 (136)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSH-HHHHHHHT
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHh
Confidence 356788987533 57789999999987 468888888875 89999999853 33334443
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.09 E-value=7 Score=32.43 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=36.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC--CC-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP--QG-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~--~G-H~G~aVV~F~~dw 390 (657)
..+.|-|++.. .+...|++.|+.|.++ .++.+..+ .| +.|++.|.|..--
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 16 SKILVRNIPFQ---------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHH
Confidence 34668898753 3577899999999987 45666552 33 5899999998743
No 41
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.82 E-value=5.2 Score=34.65 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=40.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--v~~l~g~~GH-~G~aVV~F~~dwsGf~nA~r 398 (657)
.++.|-|++... +..+|++.|+.|.++. +.+.....|. +|++.|.|...- .-..|+.
T Consensus 26 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPFEA---------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC 85 (124)
T ss_dssp CEEEEECCCTTC---------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH
Confidence 467888987533 4678999999999874 3445555665 899999998643 3334443
No 42
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=72.81 E-value=12 Score=36.47 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=39.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCccc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAGG 392 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~dwsG 392 (657)
.+.|-|++.. .+...|++.|+.|+++ .|+.+.+..|. +|++.|.|...-..
T Consensus 98 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 98 ALTVKNLSPV---------VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cccccCCCCC---------CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 5778888642 3578899999999987 67777777774 89999999875443
No 43
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=72.41 E-value=4.3 Score=32.98 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=36.7
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~d 389 (657)
|..+.|-|+|.. .+.++|++.|+.|.++. ++.+..+ .| ++|++.|.|...
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 15 PTVIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp CEEEEEECCCTT---------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 456778898753 35788999999999875 5555443 34 489999999764
No 44
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.39 E-value=6.4 Score=32.70 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=36.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCC-C-CcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
-.+.|-|++.. .+...|++.|+.|....++.+..+. | ++|++.|.|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 16 YTAYVGNLPFN---------TVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC
Confidence 45678898753 3578899999999656777777764 4 48999999985
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.32 E-value=7.1 Score=33.39 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=36.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~ 388 (657)
++.|-|+|.. .+...|++.|+.|+++ .|+....+.| ++|++.|.|..
T Consensus 13 ~lfV~~Lp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 13 SVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred EEEEECCCCC---------CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 4667888653 2578899999999987 4677766655 58999999976
No 46
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.98 E-value=8.2 Score=31.97 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=36.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
..+.|-|++.. .+...|++.|+.|.++ .++...++ .| +.|++.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 16 ATVYVGGLDEK---------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 45778898753 3578899999999887 46666665 34 589999999873
No 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=71.94 E-value=13 Score=44.63 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=8.2
Q ss_pred HHHHHHHHhcccCceee
Q 006189 229 WFKKFFESLESLTVEEI 245 (657)
Q Consensus 229 ~f~K~y~~Lk~g~~~~k 245 (657)
.|.-.-..|--|.+...
T Consensus 351 i~~ilaaiLhlGni~f~ 367 (1184)
T 1i84_S 351 ILRVVSSVLQLGNIVFK 367 (1184)
T ss_dssp HHHHHHHHHHTTTCCCB
T ss_pred HHHHHHHHHhhcCceee
Confidence 34444445555555443
No 48
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.92 E-value=61 Score=35.01 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006189 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRE 508 (657)
Q Consensus 476 qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r 508 (657)
+.+..+.+.+...++..+..+-.|++.+..|++
T Consensus 88 ~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 88 TLTKNIVELMRGDFAKANNNDNTFKQINEDLRS 120 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 49
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.74 E-value=2.2 Score=36.64 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred CeEEEEeccccc--CCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDK--DENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~--dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+++|.|+.... .++..+.......|++.|+.|.++.-..++.. ...|++.|.|...-
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~ 75 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPE 75 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHH
Confidence 458888985422 12222222335688999999998753344433 36899999998654
No 50
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=71.67 E-value=3.4 Score=34.65 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=38.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
+++|-|+|.-... ..-.+...|++.|+.|.++ .++..+++. | ++|++.|.|...
T Consensus 8 ~vfV~nLp~v~~~---~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~ 64 (100)
T 3ns6_A 8 YIVVNGAPVIPSA---KVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSM 64 (100)
T ss_dssp EEEEESCCCCBGG---GHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCcCChH---HHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCH
Confidence 5778898751111 0234577899999999987 477777765 5 489999999864
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=71.48 E-value=6.8 Score=31.60 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++. ++......-+.|++.|.|...
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 10 QIFVRNLPFD---------FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCH
Confidence 4667888642 36788999999998875 455543333589999999863
No 52
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=71.23 E-value=7.4 Score=32.88 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=34.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
++.|-|++.. .+...|++.|+.|+++. ++... .....|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 10 ILYIRNLPYK---------ITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDI 57 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCH
Confidence 4668888642 35788999999999875 44443 333489999999864
No 53
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=71.06 E-value=1.1 Score=32.92 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=16.7
Q ss_pred eeccCCCCCCCccccccCchhhhhhcc
Q 006189 252 WHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 252 f~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
-||-||.. . |.|.+.|+.|-.
T Consensus 10 qhcrfckk-----k-ysdvknlikhir 30 (37)
T 2elu_A 10 QHCRFCKK-----K-YSDVKNLIKHIR 30 (37)
T ss_dssp CEETTTTE-----E-CSSHHHHHHHHH
T ss_pred HHHHHHHH-----H-HHHHHHHHHHHH
Confidence 48999952 3 889999999954
No 54
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=70.86 E-value=7.1 Score=32.26 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++.. .+...|++.|+.|+++ .++....+.| ++|++.|.|...-. -..|+.
T Consensus 10 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVR---------MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 34667888642 3578899999999887 5677777656 47999999986443 344443
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=70.16 E-value=9.6 Score=31.39 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=37.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce---------eeeccCCC-C-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------v~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
..+.|-|++.. .+..+|++.|+.|..+. ++...++. | +.|++.|.|...-
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~ 74 (99)
T 2la6_A 14 NTIFVQGLGEN---------VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 74 (99)
T ss_dssp SEEEEECCCSS---------CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHH
Confidence 45678888652 35788999999999876 66776643 4 4899999998644
No 56
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.63 E-value=8 Score=31.29 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=35.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++...++. | ++|++.|.|..
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 18 TVYVSNLPFS---------LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp SEEEESCCTT---------SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 4668898742 3578899999999887 566666654 3 58999999986
No 57
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.60 E-value=9.5 Score=30.98 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=36.0
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-ee-eeccC-CCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RA-RHSYG-PQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv-~~l~g-~~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .+ +.+.+ ..| +.|++.|.|..-
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 7 GIFIGNLDPE---------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 4678888753 3578899999999987 45 66665 334 489999999874
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=69.30 E-value=8.9 Score=32.64 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=36.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
..+.|-|++.. .+...|++.|+.|+++ .++...++. | +.|++.|.|..
T Consensus 26 ~~lfV~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 26 CKMFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 45678888653 3577899999999987 466666653 3 58999999985
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.61 E-value=9.9 Score=31.44 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .++....+. | +.|++.|.|..-
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (103)
T 2cqg_A 17 DLIVLGLPWK---------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 67 (103)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred EEEEEcCCCc---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH
Confidence 4668888653 2577899999999987 566667653 4 489999999763
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=68.61 E-value=7.3 Score=30.98 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=36.9
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--C-CcceEEEEeCCCcc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--G-HRGMSVLIFESSAG 391 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~--G-H~G~aVV~F~~dws 391 (657)
-.+.|-|++.. .+..+|++.|+.|+++. ++...... + +.|++.|.|...-.
T Consensus 5 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 5 TKVHIGRLTRN---------VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45678888642 35788999999998874 55555443 4 78999999987543
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=68.55 E-value=10 Score=31.51 Aligned_cols=49 Identities=10% Similarity=0.327 Sum_probs=36.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.++.|-|++.. .+..+|++.|+.|+++ .++...++. | +.|++.|.|...
T Consensus 24 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 24 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 45778898753 3578899999999887 456666544 4 489999999864
No 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.33 E-value=8.3 Score=31.88 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=37.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhc-cCcc-eeeeccCCCCC-cceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFIL-YAAV-RARHSYGPQGH-RGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsg-F~p~-kv~~l~g~~GH-~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+..+|++.|+. |.++ .++.+.++.|. .|++.|.|..--
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~ 62 (104)
T 2dhg_A 11 SLFVGDLTPD---------VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 62 (104)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHH
Confidence 4668888653 357789999998 9976 57777776664 899999998643
No 63
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=68.18 E-value=8.1 Score=36.16 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=38.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
.++.|-|++.. .+..+|++.|+.|.++ .|...++..|. .|+|.|.|..-
T Consensus 89 ~~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 89 AKLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 139 (177)
T ss_dssp EEEEEECCCSC---------CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCH
Confidence 35778888642 3678899999999886 57777777664 79999999864
No 64
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=68.00 E-value=11 Score=32.49 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=36.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .++...+..| +.|++.|.|..-
T Consensus 9 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 9 KLFIGGLNRE---------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp EEEEECCTTT---------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 4668888652 3578899999999886 5677776655 479999999863
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.91 E-value=9.3 Score=31.87 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=36.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+...|++.|+.|.++ .++..+.+. | +.|++.|.|..--
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 17 TVFIRNLSFD---------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 4668898753 3578899999999987 466666654 3 5899999998644
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.59 E-value=5.9 Score=32.44 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=35.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-----CCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-----GHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-----GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++....+. -+.|++.|.|...
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 7 GLFIKNLNFS---------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 4668888652 3578899999999987 456666554 3589999999863
No 67
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=67.03 E-value=11 Score=31.81 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=36.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|+|.. .+..+|++.|+.|+++ .++...++. | +.|++.|.|..-
T Consensus 21 ~lfV~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 21 NLIVNYLPQN---------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 4678898753 3578899999999986 466666553 4 479999999864
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=66.96 E-value=13 Score=29.61 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=36.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
-.+.|-|++.. .+...|++.|+.|.++ .++.+..+. | +.|++.|.|...-
T Consensus 12 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 64 (87)
T 3s7r_A 12 GKMFVGGLSWD---------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 64 (87)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHH
Confidence 35668888652 2578899999999886 466666643 4 4899999998643
No 69
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.96 E-value=8.4 Score=29.88 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=35.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~dw 390 (657)
.+.|-|+|.. .+..+|++.|+.|+++ .++...++. -++|++.|.|.+.-
T Consensus 2 ~l~v~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 53 (77)
T 1uaw_A 2 KMFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 53 (77)
T ss_dssp CEEEESCCSS---------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH
Confidence 3567888653 2567899999999887 456666543 35899999998643
No 70
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.89 E-value=7.3 Score=33.29 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=36.6
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCC-----CCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-----GHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~-----GH~G~aVV~F~~dw 390 (657)
+.|-|++.. .+..+|++.|+.|.++.++.+.... -++|++.|.|...-
T Consensus 11 lfVgnLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 11 VFVGGLPPD---------IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp EEEECCCTT---------CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEcCCCCC---------CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 557888653 3578899999999999877766654 34899999998743
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=66.81 E-value=9.4 Score=32.30 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=36.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+ .| +.|++.|.|..-
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQE---------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCSS---------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 35678898753 3578899999999886 56677765 34 479999999863
No 72
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.44 E-value=9.2 Score=30.92 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|.++ .++..+.+. | ++|++.|.|..-
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 17 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 3668888653 3577899999999887 566666654 3 489999999864
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.40 E-value=8.4 Score=31.88 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+....-+.|++.|.|..-
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 17 NLYVKNLDDG---------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 4668888653 3578899999999887 4666666333589999999853
No 74
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=66.35 E-value=1.2e+02 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHH
Q 006189 603 AARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQL 641 (657)
Q Consensus 603 ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~l 641 (657)
-+.++|.+.|++-+..|.+.-=-...+|++++++.+..|
T Consensus 192 k~qEkL~~~h~e~le~l~~e~~k~~~~~~~~~q~~~~~l 230 (251)
T 1jad_A 192 RYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTL 230 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 356778888888887776666666666676666666555
No 75
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.13 E-value=6.3 Score=32.28 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=35.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccC-CCC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYG-PQG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g-~~G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+.++|++.|+.|.++. ++.+.. ..| ++|++.|.|...
T Consensus 16 ~~l~v~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 16 TIIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 45778898753 35788999999999875 554444 344 489999999764
No 76
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=66.03 E-value=5.1 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=38.4
Q ss_pred eEEEEecccccCC-CCcccccChHHHHHHhhccCcc-eeeeccCCCCC----cceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDE-NDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH----RGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dd-dgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH----~G~aVV~F~~dw 390 (657)
+++|.|+.+..+- +..+...--.+|++.|+.|+++ .|++.....++ .|++.|+|...-
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~ 70 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 70 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHH
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHH
Confidence 6889998663321 1111222346788888999997 56666666553 699999998864
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=66.03 E-value=10 Score=31.99 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=35.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|.++ .++...++ .| +.|++.|.|..-
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 17 HVFVGDLSPE---------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4668888653 3578899999999886 46666664 34 489999999763
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=65.98 E-value=11 Score=29.86 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++...++ .| ++|++.|.|...
T Consensus 8 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 8 HVFVGDLSPE---------ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4667888652 3578899999999886 46666653 33 489999999763
No 79
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=65.93 E-value=13 Score=29.57 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .++...++ .| +.|++.|.|...
T Consensus 8 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 8 SIYVGNVDYG---------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4667888642 2578899999999886 46666653 34 489999999975
No 80
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=65.83 E-value=7.8 Score=32.01 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=36.0
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccC-c-ceeeeccCCC--CCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-A-VRARHSYGPQ--GHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p-~kv~~l~g~~--GH~G~aVV~F~~d 389 (657)
+++|-|+|..- +..+|++.|+.|+ + ..|+.+.++. .++|+|.|.|..-
T Consensus 3 ~i~v~nLp~~~---------te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~ 54 (91)
T 2lxi_A 3 IVMLRMLPQAA---------TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 54 (91)
T ss_dssp EEEEETCCSSC---------CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCH
Confidence 46788887533 5778999999887 3 4577777654 3589999999864
No 81
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=65.12 E-value=9.8 Score=37.05 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=42.0
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
++.|-|+|.. .+...|.+.|+.|+++ .++.+....|.+|++.|.|.. -..-..|+.
T Consensus 43 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~ 99 (292)
T 2ghp_A 43 TVLVKNLPKS---------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAIT 99 (292)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHH
Confidence 5678898753 2578899999999886 577777788889999999985 333344443
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.80 E-value=11 Score=31.68 Aligned_cols=50 Identities=30% Similarity=0.401 Sum_probs=37.8
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~d 389 (657)
+-.+.|-|++.. .+..+|++.|+.|.++ .++...++.|. .|++.|.|...
T Consensus 25 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPLS---------MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 456778898753 3577899999999876 56677776654 79999999863
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.71 E-value=15 Score=30.18 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=38.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+. | ++|++.|.|..- ..-..|+.
T Consensus 12 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 70 (99)
T 2dgs_A 12 KIFVGGIPHN---------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVN 70 (99)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHH
Confidence 3567888653 3578899999999887 566666543 3 589999999763 33344443
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=64.65 E-value=12 Score=32.58 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=36.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~G-H~G~aVV~F~~d 389 (657)
++.|-|+|.. .+.++|++.|+.|+++. ++.+..+.| +.|++.|.|...
T Consensus 2 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~ 51 (166)
T 3md3_A 2 VLYVGNLDKA---------ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS 51 (166)
T ss_dssp EEEEEEEETT---------CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSH
T ss_pred EEEECCCCCc---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCH
Confidence 3567888753 25788999999999874 777777755 579999999764
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.21 E-value=11 Score=31.11 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=36.0
Q ss_pred eEEEEecccccCCCCcccccChHHHH----HHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|+ +.|+.|.++ .++....+.+ +|++.|.|...
T Consensus 11 ~l~V~nL~~~---------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~ 62 (96)
T 2dgx_A 11 DVQVSNIDYR---------LSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENL 62 (96)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCH
Confidence 4668888653 2467787 999999976 5777777777 99999999864
No 86
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=63.90 E-value=11 Score=35.67 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G-H~G~aVV~F~~dw 390 (657)
-++.|-|+|.. .+...|++.|+.|+++ .|+......| +.|++.|+|...-
T Consensus 110 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc---------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 45778898753 2578899999999986 4666666656 4899999998743
No 87
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=63.79 E-value=14 Score=31.77 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+.+.|++.|+.|.++ .++..+.+. | ++|++.|.|...
T Consensus 8 ~lfV~nL~~~---------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 8 EVTFARLNDN---------VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 4668888642 3578899999999986 577777765 4 489999999874
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.73 E-value=1.9e+02 Score=39.06 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=5.1
Q ss_pred ChHHHHHHhh
Q 006189 353 GNQELLEYFI 362 (657)
Q Consensus 353 s~~eL~d~ls 362 (657)
+...|-.+|.
T Consensus 1762 t~~~l~~~Fi 1771 (3245)
T 3vkg_A 1762 SEEELYKYFT 1771 (3245)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4455555553
No 89
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.46 E-value=17 Score=29.39 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=35.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .++...++. | +.|++.|.|..-
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 7 GLYVGSLHFN---------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 4678888653 3578899999999887 466666643 3 589999999873
No 90
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=63.36 E-value=14 Score=33.11 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=38.3
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
+-++.|-|++.. .+..+|++.|+.|.++ .|+.+..+. | +.|++.|.|..--
T Consensus 39 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 92 (156)
T 1h2v_Z 39 SCTLYVGNLSFY---------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 92 (156)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 456788898752 3578899999999887 566777654 4 4799999998643
No 91
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=63.00 E-value=11 Score=30.01 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=34.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~G-H~G~aVV~F~~d 389 (657)
++.|-|+|...++ + .-.+...|++.|+.|+++.-..+....| +.|++.|.|...
T Consensus 3 ~l~V~nLp~~~~~--~-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 3 VIVVDNVPQVGPD--R-LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP 57 (81)
T ss_dssp EEEEESCCCCCTT--T-HHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSH
T ss_pred EEEEeCCCCCcHH--H-HHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCH
Confidence 4668888753221 0 1113578999999999974333333444 479999999864
No 92
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.98 E-value=10 Score=30.47 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=32.9
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
+.|-|++.. .+...|++.|+.|.++. ++.... +.|++.|.|...-
T Consensus 8 l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~ 53 (88)
T 1wf0_A 8 VFVGRCTGD---------MTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQ 53 (88)
T ss_dssp EEEESCCSS---------SCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHH
Confidence 557787643 35788999999999874 444432 7899999999843
No 93
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=62.75 E-value=9.7 Score=31.58 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .|+.+.++. | +.|++.|.|..-
T Consensus 15 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 65 (106)
T 2dgp_A 15 KLFIGQIPRN---------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER 65 (106)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCH
Confidence 4668898753 3567899999999886 566666554 3 589999999874
No 94
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=62.31 E-value=15 Score=28.35 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=34.2
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
+.|-|+|.. .+..+|++.|+.|.++ .++...++. | ++|++.|.|.+.
T Consensus 2 l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 2 IFVGGLSVN---------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp EEEECCCSS---------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH
T ss_pred EEEecCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 456777642 3578899999999887 466665542 3 589999999874
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.29 E-value=15 Score=31.03 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
-.+.|-|++.. .+...|++.|+.|.++ .++....+. | +.|++.|.|..
T Consensus 28 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 28 RKLFIGGLSFE---------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp TEEEEECCTTC---------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC
Confidence 45678888753 2577899999999886 566776643 3 58999999986
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=62.03 E-value=11 Score=34.24 Aligned_cols=49 Identities=14% Similarity=0.342 Sum_probs=37.0
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~ 388 (657)
.++++|-|++.. .+...|.+.|+.|.++. |+.+..+ .| +.|+++|.|..
T Consensus 72 ~~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 72 GWILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp CEEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 467889998752 35788999999999874 5555553 34 48999999985
No 97
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.78 E-value=14 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+. | ++|++.|+|..-
T Consensus 13 ~~l~v~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 13 GKLFVGGLSFD---------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 35678898753 3578899999999887 566666543 3 589999999763
No 98
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=61.75 E-value=14 Score=29.21 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=35.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+...|++.|+.|.++. ++....+ .| ++|++.|.|...-
T Consensus 9 ~l~V~nl~~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 9 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 4668888642 35788999999998864 5555553 33 5899999998643
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.33 E-value=12 Score=30.71 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=34.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|..+ +.+....| +.|++.|.|..-
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~g~v--~~~~~~~g~~~g~afV~f~~~ 63 (101)
T 2fc9_A 16 KTLVLSNLSYS---------ATEETLQEVFEKATFI--KVPQNQNGKSKGYAFIEFASF 63 (101)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHCSSCSEE--ECCBCSSSCBCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCEE--EEEECCCCCEeeEEEEEECCH
Confidence 45678898753 3578899999999766 44555555 489999999863
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=61.17 E-value=14 Score=31.58 Aligned_cols=50 Identities=10% Similarity=0.323 Sum_probs=36.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~dw 390 (657)
.++.|-|++.. .+...|++.|+.|.++. |.....+ .| +.|++.|.|..--
T Consensus 23 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 23 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 35778898752 35788999999999875 5555554 34 4899999998653
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.04 E-value=17 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+. | ++|++.|.|..
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 19 KIFVGGLPYH---------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp EEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 4668898753 3578899999999887 466666643 3 58999999985
No 102
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=60.71 E-value=12 Score=33.00 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=37.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC----CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG----HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~G----H~G~aVV~F~~dw 390 (657)
.+.|-|+|.. .+...|++.|+.|+++ .++.+..+.+ ++|++.|.|...-
T Consensus 5 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~ 58 (175)
T 3nmr_A 5 KMFVGQVPRT---------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK 58 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHH
Confidence 3567788753 3578899999999887 5667776655 5899999998763
No 103
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.68 E-value=9.8 Score=31.47 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
-++.|-|++.. .+..+|++.|+.|.++ .++...++ .| +.|++.|.|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 16 ATIRVTNLSED---------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 34668888753 3578899999999887 46666664 33 589999999864
No 104
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.67 E-value=11 Score=31.02 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=35.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|+++ .++..+.+ .| +.|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 10 SVFVGNIPYE---------ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp CEEEESCCTT---------SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 3668888642 3578899999999886 56666664 34 389999999864
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=60.65 E-value=19 Score=29.41 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=35.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+..+|++.|+.|+++ .++...++. | +.|++.|.|...-
T Consensus 4 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPYD---------QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 3567787642 3578899999999987 466666643 3 4899999998643
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.48 E-value=16 Score=30.68 Aligned_cols=52 Identities=19% Similarity=0.063 Sum_probs=36.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++.. .+.++|++.|+.|.++. ++.+.+ |++.|+|... ..-..|+.
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~-~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPPS---------GSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVR 68 (108)
T ss_dssp CEEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCH-HHHHHHHH
Confidence 56778998753 35788999999998864 555544 8999999873 33334443
No 107
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=60.34 E-value=14 Score=31.25 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=36.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc---eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~---kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
+++|-|++... +.+.|++.|+.|+++ .|+...++. | ++|++.|.|..--
T Consensus 11 tlfV~nL~~~~---------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~ 64 (95)
T 2lkz_A 11 TIILRNIAPHT---------VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAM 64 (95)
T ss_dssp EEEEESCCTTC---------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSH
T ss_pred EEEEeCCCCcC---------CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHH
Confidence 36788987533 578899999999864 566666654 3 4799999998754
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=60.24 E-value=9.8 Score=31.62 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=37.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCC--CC-CcceEEEEeCCCccchHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP--QG-HRGMSVLIFESSAGGYLEAE 397 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~--~G-H~G~aVV~F~~dwsGf~nA~ 397 (657)
-.+.|-|++... +..+|++.|+.|+...++..... .| ++|++.|.|.. ...-..|+
T Consensus 20 ~~l~V~nLp~~~---------t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai 78 (100)
T 2j76_E 20 YTAFLGNLPYDV---------TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL 78 (100)
T ss_dssp CEEEESCCSSCC---------SSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHH
Confidence 446677886533 45679999999984466666664 34 48999999985 33344444
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=60.17 E-value=14 Score=31.49 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=38.1
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCCc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSA 390 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~dw 390 (657)
+..+.|-|++.. .+..+|++.|+.|.++ .++.++++ .| +.|++.|.|...-
T Consensus 36 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 89 (124)
T 2jwn_A 36 KRSVYVGNVDYG---------STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 89 (124)
T ss_dssp HTEEEEEEECTT---------CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHH
Confidence 356778898652 3578899999999987 47777763 34 4899999998743
No 110
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.04 E-value=22 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=38.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~-G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
.+.|-|++.. .+..+|++.|+.|.++. ++....+. | ++|++.|.|..--. -..|++
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPG---------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA-AQKAVT 65 (85)
T ss_dssp EEEEESCCTT---------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH-HHHHHH
Confidence 4667888653 35778999999998864 55666543 3 58999999987433 344444
No 111
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=59.97 E-value=10 Score=30.52 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=35.6
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~dw 390 (657)
+.|-|++.. .+...|++.|+.|+++ .++...++. .++|++.|.|.+.-
T Consensus 4 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 4 IYVGNLVYS---------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEECTT---------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEECCCCCC---------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 567787642 3577899999999886 566666653 35899999998754
No 112
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=59.86 E-value=92 Score=34.36 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 523 QHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQER 564 (657)
Q Consensus 523 ~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~er 564 (657)
++.|.+|+ .-..+..+|++++...+......++|++.-.
T Consensus 149 ~~~~~~~~---~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 149 HQLYIDET---VNSNIPTNLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHTHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---hhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554433 3344566777777777777778888887633
No 113
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=59.79 E-value=1.8e+02 Score=32.11 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006189 540 DQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 540 ~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
.+++.+....+.-...+.+|+.+
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333444444555444
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.69 E-value=20 Score=29.56 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=37.3
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCcc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSAG 391 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~-G-H~G~aVV~F~~dws 391 (657)
-.+.|-|++.. .+...|++.|+.|.++. ++...++. | +.|++.|.|..--.
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 14 ITLKVDNLTYR---------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 35678898753 35788999999998864 56666554 3 48999999987543
No 115
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=59.64 E-value=9.9 Score=35.73 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=38.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+..+|++.|+.|..+ .++.++...+.+|++.|.|...-
T Consensus 105 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCcccc---------cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 3567888653 3578899999999886 57778888788999999998753
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=59.63 E-value=19 Score=30.03 Aligned_cols=49 Identities=12% Similarity=0.313 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--CCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~--GH~G~aVV~F~~dw 390 (657)
++.|-|++.. .+..+|++.|+.|+++. ++...++. -+.|++.|.|...-
T Consensus 28 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 28 ILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 5668888652 35788999999998874 55555542 34899999998643
No 117
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=59.57 E-value=17 Score=32.67 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=37.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~d 389 (657)
..+.|-|++.. .+...|++.|+.|.++. ++.+... .| ++|++.|.|...
T Consensus 105 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED---------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC---------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 56788898653 35788999999999874 6666664 34 489999999873
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.41 E-value=11 Score=31.36 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=39.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERL 399 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dwsGf~nA~rL 399 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+. | ++|++.|.|..- ..-..|+..
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 18 KLFVGGLDWS---------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp EECCBSCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 4567788653 3578899999999887 566666643 3 579999999864 344444443
No 119
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=58.13 E-value=18 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~d 389 (657)
++.|-|+|.. .+..+|++.|+.|+++. ++.+..+ .| ++|++.|.|...
T Consensus 4 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQN---------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 4667888753 35788999999999874 6666655 44 479999999863
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=57.92 E-value=17 Score=29.89 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=37.5
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH-HHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER-LHK 401 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dwsGf~nA~r-Lek 401 (657)
+.|-|++.. .+..+|++.|+.|.++. ++...+ +.|++.|.|...-. -..|+. |+.
T Consensus 3 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~-a~~A~~~l~g 59 (101)
T 2hvz_A 3 VYVGNLGTG---------AGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRD-AEDAVRGLDG 59 (101)
T ss_dssp EEEECCCSS---------CSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHH-HHHHHHHHHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHH-HHHHHHHHCC
Confidence 567787642 35788999999998864 555544 88999999976433 344444 443
No 121
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=57.69 E-value=19 Score=30.82 Aligned_cols=52 Identities=19% Similarity=0.078 Sum_probs=36.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
..+.|-|++... +.++|++.|+.|.++. +..+.. |++.|.|... ..-..|+.
T Consensus 17 ~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~-~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSG---------SWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSC---------CTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSH-HHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCH-HHHHHHHH
Confidence 557789987533 4567999999998764 444443 8999999873 33444444
No 122
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=57.64 E-value=21 Score=31.42 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCcc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSAG 391 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~dws 391 (657)
+..+.|-|++.. .+...|++.|+.|+++. ++...++ .| +.|++.|.|...-.
T Consensus 94 ~~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCCc---------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 567889998753 25788999999999874 6666664 44 38999999987543
No 123
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=56.48 E-value=20 Score=28.09 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=35.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|+++. ++...++ .| ++|++.|.|...
T Consensus 3 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 3 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 4667888652 35788999999998864 6666553 34 489999999864
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=55.93 E-value=20 Score=30.07 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=36.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCCCcc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESSAG 391 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~G-H~G~aVV~F~~dws 391 (657)
++.|-|++...++. ...+...|++.|+.|+++. ++.. ...| +.|++.|.|...-.
T Consensus 17 ~l~V~nLp~~~~~~---~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 17 VIVVDNVPQVGPDR---LEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp EEEEESCCCCCTTT---TTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSH
T ss_pred EEEEeCCCcchhhh---hHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHH
Confidence 56788987633220 1114578999999999974 4444 3444 47999999987543
No 125
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.91 E-value=14 Score=30.44 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=32.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCC-CC-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP-QG-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~-~G-H~G~aVV~F~~ 388 (657)
.+.|-|++.. .+.++|++.|++| +.++.+..+ .| +.|++.|.|..
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 17 TLFVKGLSED---------TTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SEEEECCCTT---------CCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSS
T ss_pred EEEEeCCCCc---------cCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECC
Confidence 3568888652 3578899999988 466666554 33 48999999986
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=55.47 E-value=9.5 Score=33.36 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce---eeeccCC-CC-CcceEEEEeCCCccchHHHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---ARHSYGP-QG-HRGMSVLIFESSAGGYLEAERLH 400 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---v~~l~g~-~G-H~G~aVV~F~~dwsGf~nA~rLe 400 (657)
.+.|-|++... +...|++.|..|.++. |+.+.++ .| ++||+.|.|..- ..-.-...|+
T Consensus 25 ~lfV~nL~~~~---------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 25 TIILRNLNPHS---------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp EEEECSCCTTC---------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 46688886533 4678999999998873 6777776 44 489999999987 4433333343
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.25 E-value=21 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~ 388 (657)
.+.|-|++.. .+...|++.|+.|.++....+. .|++.|.|..
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~ 51 (90)
T 2dnq_A 10 KLFIGNLPRE---------ATEQEIRSLFEQYGKVLECDII-----KNYGFVHIED 51 (90)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECC
Confidence 4567888653 3578899999999987533332 6899999986
No 128
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.02 E-value=1.7e+02 Score=28.98 Aligned_cols=29 Identities=3% Similarity=0.001 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006189 478 LIYLKNRVVKEQRHSKALEATFSIVSEKL 506 (657)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~~e~s~sL 506 (657)
+..|...+......+++|+..+..+...+
T Consensus 20 i~~l~~~~~~lp~el~~le~~~~~l~~~~ 48 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALNDKEAKNKAI 48 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444433333
No 129
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=54.88 E-value=28 Score=29.95 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=36.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+...|++.|+.|.++ .++....+. | ++|++.|.|..-
T Consensus 64 ~~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 64 RVLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred cEEEEEeCCCC---------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 34668898753 3578899999999987 466666533 3 589999999864
No 130
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.65 E-value=20 Score=29.38 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++....+. -+.|++.|.|..-
T Consensus 14 ~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2cqb_A 14 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 64 (102)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4668888753 3578899999999887 456555533 3589999999864
No 131
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=54.57 E-value=40 Score=29.85 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
+..+.|-|++.. .+...|++.|+.|.++ .++...++ .| +.|++.|.|...
T Consensus 70 ~~~l~v~nl~~~---------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 456778888653 3578899999999987 56666664 34 589999999863
No 132
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.09 E-value=2e+02 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 006189 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (657)
Q Consensus 474 ~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m 510 (657)
..+.+..+.+.+...++..+..+-.|++.+..|++-.
T Consensus 84 s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri 120 (491)
T 1m1j_A 84 SNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRI 120 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 4556666666777777777777777777777666633
No 133
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=53.97 E-value=23 Score=29.96 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=36.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~dw 390 (657)
..+.|-|++.. .+..+|++.|+.|.++ .++....+. -++|++.|.|...-
T Consensus 41 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 93 (118)
T 2khc_A 41 CNLFIYHLPQE---------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 93 (118)
T ss_dssp EEEEEECSCTT---------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHH
Confidence 35668888652 3578899999999886 456666543 35899999998654
No 134
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=53.73 E-value=17 Score=31.53 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=32.7
Q ss_pred EEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 335 IIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 335 II~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
+|-|++..- +.+.|++.|..|+|+.-.++.- |+||+.|+|...
T Consensus 11 ~VgNL~~~~---------te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 11 LLKNLTAQI---------DGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EEECCCTTC---------CCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSH
T ss_pred EEeCCCccC---------CHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCH
Confidence 367875432 4678999999999986555432 899999999875
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=53.47 E-value=26 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=36.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
..+.|-|++.. .+..+|++.|+.|.++ .++..... .| ++|++.|+|...
T Consensus 90 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 90 TNLYVTNLPRT---------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCEEEeCCCCC---------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 56788898753 3578899999999886 45666654 34 489999999873
No 136
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.32 E-value=24 Score=29.52 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhH
Q 006189 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK 528 (657)
Q Consensus 486 e~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ne 528 (657)
+-+.+|+++||.++.++......+..||..||.....+...++
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999998887777777887777766555555544
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=52.73 E-value=16 Score=28.13 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=37.1
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCccchHHHHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~dwsGf~nA~r 398 (657)
+.|-|+|.. .+..+|++.|+.|+++ .++...++. -++|++.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD---------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS---------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456676542 3578899999999887 455555543 35899999998653 3344443
No 138
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.42 E-value=27 Score=28.53 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++. +....+ .|++.|.|...
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~ 63 (97)
T 1why_A 19 RLWVGGLGPN---------TSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESL 63 (97)
T ss_dssp CEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCH
Confidence 4668888653 35788999999999874 444432 78999999764
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=51.75 E-value=17 Score=30.44 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+.|-|++... .+..+|++.|+.|.++.-..+ +.|++.|.|...-
T Consensus 29 ~l~V~nl~~~~--------~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~ 73 (110)
T 1wf1_A 29 RVFIGNLNTAL--------VKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNER 73 (110)
T ss_dssp EEEECSCCCSS--------CCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSH
T ss_pred EEEEeCCCccc--------CCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHH
Confidence 67788886530 357889999999998754333 6899999997754
No 140
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=51.47 E-value=24 Score=34.21 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.8
Q ss_pred ecCCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CC-cceEEEEeCCC
Q 006189 329 VWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GH-RGMSVLIFESS 389 (657)
Q Consensus 329 VWPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH-~G~aVV~F~~d 389 (657)
.-...+.|.|++... .+...|++.|+.|+++ .++...... |. +|++.|.|...
T Consensus 208 ~~~~~l~v~nlp~~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 208 LEGREIMIRNLSTEL--------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp CTTTEEEEEEECTTT--------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCCceEEEECCCccc--------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 345678899987530 3578899999999887 466666655 54 89999999764
No 141
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=51.46 E-value=26 Score=31.98 Aligned_cols=49 Identities=14% Similarity=0.357 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|+++ .++.+..+ .| +.|++.|.|...
T Consensus 29 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 29 SRVYVGSIYYE---------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 35778998753 3578899999999986 46666654 34 589999999753
No 142
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=51.29 E-value=20 Score=31.66 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|.++ .++.++++. -..|++.|.|..-
T Consensus 48 ~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 48 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp CBCEETCTTS---------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 3557888653 3577899999999987 566676654 3589999999764
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.10 E-value=26 Score=29.82 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=32.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
++.|-|++.. .+..+|++.|+.|.++.-..+- -..|++.|.|..--
T Consensus 12 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~ 57 (111)
T 1whx_A 12 VILAKNLPAG---------TLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPL 57 (111)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHH
Confidence 4668888642 3578899999999987433332 15679999998654
No 144
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=50.62 E-value=29 Score=28.80 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=31.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++. ...+...|++.|+.|+.+....+ ..|++.|.|...
T Consensus 24 ~l~V~nLp~--------~~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~ 67 (97)
T 2xnq_A 24 RLFIGNLPL--------KNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNP 67 (97)
T ss_dssp EEEEESCCS--------SCCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSH
T ss_pred EEEEeCCCc--------ccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCH
Confidence 355788863 02357889999999998754333 378999999874
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=50.59 E-value=22 Score=31.02 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=33.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccC-cceeeeccCCCCCcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AVRARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~kv~~l~g~~GH~G~aVV~F~~ 388 (657)
..+.|-|++.. .+.++|++.|+.|. .+....+. .....|++.|.|..
T Consensus 29 ~~l~VgnLp~~---------~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 29 YRITMKNLPEG---------CSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPS 76 (111)
T ss_dssp EEEEEECSSCC---------CCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESS
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECC
Confidence 46788998753 25788999999998 44332232 12478999999986
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=50.43 E-value=13 Score=30.28 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=32.0
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~G-H~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|..+.+. ...| +.|++.|.|...
T Consensus 18 ~l~V~nL~~~---------~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 18 TLLAKNLSFN---------ITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCH
Confidence 4567888642 3578899999998665443 3334 589999999863
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=50.30 E-value=30 Score=30.24 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=36.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
..+.|-|++.. .+..+|++.|+.|+++ .++...++. | ++|++.|.|...
T Consensus 88 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 88 GKIFVGGIGPD---------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp EEEEEEEECTT---------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred CeEEECCCCCC---------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 36778888653 3578899999999887 566666642 3 589999999763
No 148
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=50.14 E-value=19 Score=31.41 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .|+.+.++. | ++|++.|.|..-
T Consensus 44 ~l~V~nLp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 44 NLMVNYIPTT---------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp EEEEESCSTT---------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4667888652 3577899999999886 566666654 3 489999999864
No 149
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.13 E-value=20 Score=30.34 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHH---HHhhccCcc-eeeeccCCC-----CCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELL---EYFILYAAV-RARHSYGPQ-----GHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~---d~lsgF~p~-kv~~l~g~~-----GH~G~aVV~F~~d 389 (657)
-++.|-|++... +..+|+ +.|+.|.++ .++...... .++|++.|.|...
T Consensus 16 ~~l~V~nLp~~~---------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 16 NLVFVVGLSQRL---------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp SCEEEEEECTTT---------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred CEEEEECCCCCC---------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 356788987643 356788 899999987 455554433 3568999999874
No 150
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.03 E-value=24 Score=28.72 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=35.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc--eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~--kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++ .++.+.++ .| +.|++.|.|..-
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 11 SLWMGDLEPY---------MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4567788652 3578899999999984 56677665 33 479999999853
No 151
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=49.47 E-value=25 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=38.7
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc---eeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~---kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
++.|-|++.. .+.+.|++.|+.|..+ .++.+....+.+|+++|+|... .-=..|+.
T Consensus 125 ~l~v~NLp~~---------~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~-~~A~~Ai~ 183 (205)
T 3tyt_A 125 VLHFFNAPLE---------VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSK-SDALETLG 183 (205)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSH-HHHHHHHH
T ss_pred eEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCH-HHHHHHHH
Confidence 4667888652 3578899999999875 5666655545579999999863 33334443
No 152
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.23 E-value=24 Score=29.48 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=34.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
-.+.|-|++.. .+...|++.|+.|.++. ++.... .|++.|.|...-
T Consensus 26 ~~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIASG---------LTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSSC---------CCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHH
Confidence 35678888652 35788999999998874 555543 789999998743
No 153
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.05 E-value=32 Score=28.53 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=32.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCc-c-eeeec-cCCC--CCcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-V-RARHS-YGPQ--GHRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p-~-kv~~l-~g~~--GH~G~aVV~F~~ 388 (657)
.+.|-|++.. .+..+|++.|+.|.+ + .+... .... -++|++.|.|..
T Consensus 10 ~l~V~nLp~~---------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 10 RLFIGGIPKM---------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp EEEEECCCTT---------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 3567888642 357889999999976 5 44444 2322 358999999986
No 154
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=48.84 E-value=24 Score=29.94 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=36.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
-.+.|-|++.. .+..+|++.|+.|+++ .++....+. | ++|++.|.|..--
T Consensus 27 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 27 MRLYVGSLHFN---------ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp EEEEEECCCSS---------CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 35668888642 3578899999999887 466666543 3 4899999998643
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.69 E-value=28 Score=27.48 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=32.1
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~ 388 (657)
++.|-|++.. .+...|++.|+.|.++. ++... ..|++.|.|..
T Consensus 14 ~l~V~~l~~~---------~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~ 57 (85)
T 2ytc_A 14 TLYVGGLGDT---------ITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFAT 57 (85)
T ss_dssp CEEEECCTTT---------SCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESS
T ss_pred EEEEcCCCCC---------CCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECC
Confidence 4668888652 35788999999998864 44443 37899999986
No 156
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.68 E-value=22 Score=31.99 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006189 536 QLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 570 (657)
Q Consensus 536 ~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~ 570 (657)
.++-+++..+.+..++.|+.|..|+.+-+++.+++
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~ 60 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEF 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999988887653
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=48.64 E-value=28 Score=28.58 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=33.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
-++.|-|++.. .+..+|++.|+.|+++. ++.. -+.|++.|.|...-
T Consensus 28 ~~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~ 74 (101)
T 2la4_A 28 TTAYIGNIPHF---------ATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHE 74 (101)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHH
T ss_pred CEEEEcCCCcc---------cCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHH
Confidence 35678888652 35788999999998874 4433 35789999998643
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=48.26 E-value=27 Score=28.62 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=30.7
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~ 388 (657)
+.|-|++.. ..+..+|++.|+.|.++....+ +.|++.|.|..
T Consensus 13 l~V~nlp~~--------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 13 LFIGNLPLK--------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEESSTTS--------CCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECC
Confidence 557787641 2357889999999998754333 37899999986
No 159
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.97 E-value=93 Score=30.64 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 006189 457 MRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRE 508 (657)
Q Consensus 457 LKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r 508 (657)
|-.|...++++++ ..+.+|..|.+++...++.++..+.....+...|.-
T Consensus 4 ~~~YK~~~q~ql~---~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 4 LTVYKNSVKQQID---SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888 999999999998888888877665555544444433
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=47.65 E-value=37 Score=29.31 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=36.4
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
..+.|-|++.. .+...|++.|+.|+++ .++..... .| ++|++.|+|...
T Consensus 89 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPKT---------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCCc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 34778888652 3578899999999987 46666654 44 489999999874
No 161
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.52 E-value=2.2e+02 Score=28.09 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006189 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHE 547 (657)
Q Consensus 476 qlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e 547 (657)
.++.|+-..+...+.++..|...+.......+++.++ ...|..+-..|-...+.-+..++++
T Consensus 125 elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~q----------lE~~v~~K~~~E~~L~~KF~~lLNe 186 (213)
T 1ik9_A 125 ELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGR----------FEKAVSAKEALETDLYKRFILVLNE 186 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777776666666666666666555555555544 4555555666666777777888874
No 162
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.68 E-value=2.1e+02 Score=30.88 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMD 532 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~k 532 (657)
.-...|..|++.|...++.....-.-+..+...|+..+.+ +...+....+|.++++.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q---~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAK---ANNNDNTFKQINEDLRS 120 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555544 22344444555555443
No 163
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.59 E-value=94 Score=34.95 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEE 554 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~ 554 (657)
++.+..+.+.|..++...+.++..|++++..|++..+.+++ +++.++ .+|++|+..+++--.
T Consensus 84 eqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe----------------kVdnQl--snIrvLQsnLedq~~ 145 (562)
T 3ghg_A 84 HSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR----------------KVIEKV--QHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH----------------HHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH----------------HHHHHH--HHHHHHHHHHHHHHH
Confidence 34444455555566666677777888888777775555221 122222 344555555555555
Q ss_pred HHHHHHHHHHHHHhhh
Q 006189 555 NFEKLQQQEREKVKQS 570 (657)
Q Consensus 555 ~FEkLqq~erek~~~~ 570 (657)
+..+|+-.=-.+++-|
T Consensus 146 kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 146 DMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666665544444444
No 164
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=46.58 E-value=25 Score=29.93 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=32.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.|+++. ++.. .|++.|.|...
T Consensus 32 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~ 75 (108)
T 2jvo_A 32 TRLFVRPFPLD---------VQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEA 75 (108)
T ss_dssp SEEEECSSCTT---------CCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCH
Confidence 45667888652 35788999999999874 4444 78999999863
No 165
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=46.54 E-value=14 Score=30.00 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=32.4
Q ss_pred eEEEEecccccCCCCcccccChHHHH----HHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|+ +.|+.|+++....+....-+.|++.|.|..-
T Consensus 10 ~l~V~nLp~~---------~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 10 TIYINNLNEK---------IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCH
Confidence 4668888653 2466777 8999999875433332223478999999864
No 166
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=46.36 E-value=3.9 Score=44.38 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCCCC
Q 006189 120 GRVNAR 125 (657)
Q Consensus 120 ~~~~~~ 125 (657)
++|..|
T Consensus 296 ~~~~~R 301 (417)
T 2ayu_A 296 TTKQVR 301 (417)
T ss_dssp ------
T ss_pred CCCccc
Confidence 344444
No 167
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.04 E-value=33 Score=28.09 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|.+..|..+.-. +|++.|.|..-
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~ 61 (99)
T 2cpd_A 17 ILYVRNLMLS---------TSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNR 61 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCH
Confidence 5668888653 357889999999965544444332 56999999763
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=45.75 E-value=33 Score=30.81 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=38.8
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CCC-cceEEEEeCCCcc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QGH-RGMSVLIFESSAG 391 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~GH-~G~aVV~F~~dws 391 (657)
+..+.|-|++.. .+..+|++.|+.|+++ .++..+++ .|. +|++.|.|...-.
T Consensus 114 ~~~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCTT---------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 456778888652 2578899999999987 56777764 454 8999999987544
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=45.51 E-value=32 Score=33.22 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSA 390 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH-~G~aVV~F~~dw 390 (657)
...+.|-|++.... +...|++.|+.|+++ .++...+..|+ +|++.|.|...-
T Consensus 184 ~~~l~v~nlp~~~~--------~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPPGFN--------DVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCTTCC--------CHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCcccC--------CHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 34577889875321 367899999999986 67778877886 899999998653
No 170
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=45.21 E-value=3.7 Score=35.31 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=11.9
Q ss_pred eeecCCCCeeeccCCCCC
Q 006189 243 EEINEPARQWHCPACQGG 260 (657)
Q Consensus 243 ~~kn~~~~tf~CP~C~gk 260 (657)
+|... ...|+|-++.|.
T Consensus 43 KV~R~-KnKWKc~LKdGi 59 (79)
T 1nh2_C 43 KVTRT-KARWKCSLKDGV 59 (79)
T ss_dssp EEEEE-TTEEEEEEEEEE
T ss_pred EEeee-cceEEEEEeeeE
Confidence 44445 678999988754
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=45.19 E-value=32 Score=31.35 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=36.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CCC-cceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QGH-RGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~GH-~G~aVV~F~~ 388 (657)
-++.|-|++.. .+..+|++.|+.|..+ .++.+..+ .|. .|++.|.|..
T Consensus 126 ~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQD---------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCCc---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 36778898653 3578899999999887 46666654 343 8999999977
No 172
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=45.07 E-value=95 Score=28.38 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=41.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHH
Q 006189 586 EIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 639 (657)
Q Consensus 586 ~~~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~ 639 (657)
|+.+.-..++.....|+..+-.|+-+-++++++++++|-....++|-+|-..-+
T Consensus 40 ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK 93 (115)
T 3vem_A 40 ELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTT 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556778889999999999999999999999988888877654433
No 173
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=45.00 E-value=8.9 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=16.2
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+.|.|+.|+. . |.....|..|-.
T Consensus 1 ~~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (29)
T 2m0f_A 1 GPLKCRECGK-----Q-FTTSGNLKRHLR 23 (29)
T ss_dssp CCEECTTTSC-----E-ESCHHHHHHHHH
T ss_pred CCccCCCCCC-----c-cCChhHHHHHHH
Confidence 3689999963 2 555778888843
No 174
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.99 E-value=18 Score=30.41 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=33.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-----eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-----kv~~l~g~~GH~G~aVV~F~~d 389 (657)
-++.|-|++.. .+...|++.|+.|.++ .++.. ..-+.|++.|.|...
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR---------VTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 35778898742 3578899999988876 23333 334579999999863
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=44.98 E-value=33 Score=29.92 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~dw 390 (657)
.+.|-|+|.. .+..+|++.|+.|+++ .++....+. | ++|++.|.|..--
T Consensus 5 ~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNWD---------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 4567788653 3578899999999886 466666542 3 5899999998653
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=44.77 E-value=51 Score=28.24 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=52.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CC-cceEEEEeCCCccchHHHHHHHHHHhhcCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GH-RGMSVLIFESSAGGYLEAERLHKHFAEQGT 408 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH-~G~aVV~F~~dwsGf~nA~rLekhFe~qg~ 408 (657)
+++|.|+.+..+ +.-..-.+|++.|+.|+.+ .|++...+. |+ .|++.|+|...-..-.-...|+ |
T Consensus 10 ~l~l~Nm~~~~~----l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln------G- 78 (105)
T 2pe8_A 10 VVLLRNMVGAGE----VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN------G- 78 (105)
T ss_dssp EEEEESSSCSCC----C---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT------T-
T ss_pred EEEEEcCCChHH----hhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC------C-
Confidence 688889875211 1122478999999999987 566665543 33 8999999987633222222221 1
Q ss_pred ChhhhhhhcccccccCCCcceeeeeeccccccCCCC
Q 006189 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFN 444 (657)
Q Consensus 409 GRkdW~~~~r~~~~~pG~~~~LYGWlAradDyd~~d 444 (657)
+ |. .++.|+--.|..++|...+
T Consensus 79 -~--~~-----------~Gr~i~v~~a~~~~f~~~~ 100 (105)
T 2pe8_A 79 -R--YF-----------GGRVVKACFYNLDKFRVLD 100 (105)
T ss_dssp -C--EE-----------TTEECEEEECCHHHHHTTC
T ss_pred -C--EE-----------CCcEEEEEEcCHHHhhhhh
Confidence 1 11 2567777778777776543
No 177
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=44.59 E-value=32 Score=30.40 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=34.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
-.+.|-|++... +..+|++.|+.|.++. ++...+ ++|++.|.|...-
T Consensus 74 ~~l~V~nl~~~~---------t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGNNG---------NKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCSCC---------SCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHH
Confidence 456688886532 4678999999998864 555543 6899999998643
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=44.43 E-value=31 Score=30.05 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=35.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|+|.. .+..+|++.|+.|+++ .++....+ .| ++|++.|.|...
T Consensus 5 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 55 (168)
T 1b7f_A 5 NLIVNYLPQD---------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE 55 (168)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH
Confidence 4678888753 3577899999999987 46666554 34 579999999853
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=44.40 E-value=23 Score=37.93 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=39.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCCccchHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSAGGYLEAE 397 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~dwsGf~nA~ 397 (657)
-++.|-|++.. ++...|.+.|+.|.++ .|.++++. .| +.||+.|.|..--. -..|+
T Consensus 103 ~~lfV~nL~~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNYD---------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 35778898653 3578899999999987 56666664 34 48999999976543 33344
No 180
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=44.14 E-value=1.1e+02 Score=34.38 Aligned_cols=10 Identities=20% Similarity=0.092 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 006189 289 RELAELLDEE 298 (657)
Q Consensus 289 rALa~lLe~d 298 (657)
+.|+.|+...
T Consensus 291 ~~L~~l~~~y 300 (592)
T 1f5n_A 291 PRLESLVLTY 300 (592)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 181
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.13 E-value=36 Score=27.81 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=32.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+.|-|++.. .+..+|++.|+.|.++. ++... ..|++.|.|...-
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~ 62 (99)
T 2cpj_A 17 RLFVGNLPPD---------ITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRT 62 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHH
Confidence 5678898753 35778999999998874 44432 2689999998753
No 182
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=43.66 E-value=22 Score=28.78 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=35.6
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccC--c-ceeeeccCC-CC-CcceEEEEeCCCccchHHHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESSAGGYLEAE 397 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p-~kv~~l~g~-~G-H~G~aVV~F~~dwsGf~nA~ 397 (657)
+.|-|++.. .+..+|++.|+.|+ . ..++...++ .| +.|++.|.|... ..-..|+
T Consensus 4 l~V~nL~~~---------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 4 LYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp CEEESCCTT---------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 557777542 35788999999998 4 356666664 34 489999999753 3333444
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=42.75 E-value=36 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.7
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.++.|.|++.. .+..+|++.|+.|..+... ....-++|++.|.|...
T Consensus 100 ~~l~v~nlp~~---------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 100 RTLLAKNLSFN---------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GEEEEESCCSS---------CCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCH
Confidence 46778898753 3578899999998766544 22334589999999873
No 184
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=42.17 E-value=11 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=15.8
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
..|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQ-----R-SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred cCccCCCcCh-----h-hCCHHHHHHHH
Confidence 5799999963 2 55567787774
No 185
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.16 E-value=60 Score=26.27 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=35.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
.+.|-|++.. .+..+|++.|+.|.++.-.+.....|. ++.|.|.. -..-..|+.
T Consensus 10 ~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRG---------VDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCTT---------CCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 3557787642 357889999999998764333333444 99999976 334444443
No 186
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=42.06 E-value=28 Score=30.82 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=36.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~ 388 (657)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+. -+.|++.|.|..
T Consensus 48 ~~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 48 TSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CCEEEECCCSS---------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 45778898753 3578899999999987 566666542 358999999986
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=41.27 E-value=39 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=30.9
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhcc----C-------cc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILY----A-------AV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF----~-------p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+..+|++.|+.| . ++ .++.... .|++.|.|..-
T Consensus 7 ~~l~V~nLp~~---------~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~ 63 (87)
T 2hzc_A 7 RRLYVGNIPFG---------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV 63 (87)
T ss_dssp GEEEEESCCTT---------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCH
Confidence 34668888652 3578899999988 5 33 3343322 79999999873
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=41.13 E-value=26 Score=29.92 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHh-hccCcc-eeeeccCCCCC-cceEEEEeCCCccc
Q 006189 357 LLEYF-ILYAAV-RARHSYGPQGH-RGMSVLIFESSAGG 392 (657)
Q Consensus 357 L~d~l-sgF~p~-kv~~l~g~~GH-~G~aVV~F~~dwsG 392 (657)
|++.| +.|+++ .+++..+..|+ .|++.|.|...-..
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 34445 899987 57777776666 89999999875443
No 189
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.11 E-value=35 Score=29.87 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.5
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
..+.|-|++.. .+..+|++.|+.|..+ .|+.+.+ .|++.|+|...
T Consensus 17 ~~LfV~nLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 17 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CEEEECSCCTT---------SCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH
Confidence 44667788642 3578899999999986 4666643 69999999873
No 190
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.08 E-value=43 Score=28.59 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=32.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
++.|-|++.. .+..+|++.|+.|..+. |+.+.+ .|+|.|+|...
T Consensus 17 ~l~V~nLp~~---------~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~ 61 (101)
T 2cq1_A 17 VLHIRKLPGE---------VTETEVIALGLPFGKVTNILMLKG----KNQAFLELATE 61 (101)
T ss_dssp EEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCH
Confidence 5667888642 35788999999999874 554432 79999999874
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=40.27 E-value=39 Score=30.31 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=35.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~-G-H~G~aVV~F~~ 388 (657)
.+.|-|++... +..+|++.|+.|+++ .++.+..+. | ++|++.|.|..
T Consensus 15 ~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (196)
T 1l3k_A 15 KLFIGGLSFET---------TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64 (196)
T ss_dssp EEEEESCCTTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCC
Confidence 46788987533 578899999999887 466666643 4 58999999976
No 192
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.75 E-value=45 Score=29.71 Aligned_cols=46 Identities=11% Similarity=0.207 Sum_probs=34.9
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.++.|-|++.. .+..+|++.|+.|..+ .|+.+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHH
Confidence 45778888652 3578899999999987 4666654 699999998743
No 193
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=39.70 E-value=36 Score=28.14 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=30.8
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|..|.++....+. .|++.|.|..-
T Consensus 13 ~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~ 55 (103)
T 2dgu_A 13 VLFVRNLANT---------VTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDER 55 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCH
Confidence 3668888652 3578899999999887533332 45999999863
No 194
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.55 E-value=13 Score=22.61 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=16.4
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.+|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~~-----~-f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGR-----S-FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999973 2 555677888843
No 195
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.43 E-value=52 Score=26.48 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=30.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~ 388 (657)
.+.|-|++.. .+..+|++.|+.|.++. ++.. .+++.|.|..
T Consensus 12 ~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~ 53 (92)
T 2dgt_A 12 KLHVGNISPT---------CTNQELRAKFEEYGPVIECDIV------KDYAFVHMER 53 (92)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESC
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECC
Confidence 4668888652 35788999999999874 4444 3499999986
No 196
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=39.23 E-value=13 Score=24.32 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=17.2
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 32 (37)
T 1p7a_A 9 IKPFQCPDCDR-----S-FSRSDHLALHRK 32 (37)
T ss_dssp SSSBCCTTTCC-----C-BSSHHHHHHHHG
T ss_pred CCCccCCCCCc-----c-cCcHHHHHHHHH
Confidence 57899999973 2 554678888843
No 197
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=39.10 E-value=32 Score=30.23 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred eEEEEecccccC-CCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhcCCCh
Q 006189 333 MVIIMNTRLDKD-ENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDR 410 (657)
Q Consensus 333 mGII~Nt~te~d-ddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLekhFe~qg~GR 410 (657)
+++|.|+.+..+ .+..+.-.=-.+|++.|+.|+.+. |.+.- ....|++.|+|...- +|.+--+... ||
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~--~~~~G~~fV~f~~~e----~A~~Ai~~ln----G~ 78 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK--NSAQGNVYVKCPSIA----AAIAAVNALH----GR 78 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT--TCTTCCEEEECSSHH----HHHHHHHHHT----TC
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec--CCCcEEEEEEECCHH----HHHHHHHHhC----CC
Confidence 588999877443 223333344556788888999874 44432 224899999998743 3332222221 11
Q ss_pred hhhhhhcccccccCCCcceeeeeeccccccCCC
Q 006189 411 DSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVF 443 (657)
Q Consensus 411 kdW~~~~r~~~~~pG~~~~LYGWlAradDyd~~ 443 (657)
|. +++.|+--.+..++|...
T Consensus 79 --~f-----------~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 79 --WF-----------AGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp --EE-----------TTEECEEEEECHHHHHHH
T ss_pred --EE-----------CCEEEEEEEEcHHHHHHh
Confidence 11 256777777777777653
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.02 E-value=32 Score=29.54 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.2
Q ss_pred cccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 350 TGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 350 ~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
...+...|++.|+.|..+. |+.+ .-+.|++.|+|...-
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVK 65 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHH
Confidence 3467899999999999874 4444 356899999998743
No 199
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.71 E-value=52 Score=26.55 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=32.3
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceee--eccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRAR--HSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~--~l~g~~GH~G~aVV~F~~d 389 (657)
..+.|-|++.. .+...|++.|+.|.++.-. ....+ .+|.+.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~i~~~~--~~~~afV~f~~~ 64 (96)
T 2e44_A 16 RKLQIRNIPPH---------LQWEVLDSLLVQYGVVESCEQVNTDS--ETAVVNVTYSSK 64 (96)
T ss_dssp CCEEEEEECSS---------SCHHHHHHHHHHHSCEEEEEEECCSS--SSEEEEEEESSH
T ss_pred CEEEEEcCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEECCH
Confidence 45678898752 3578899999999987533 34433 344589999864
No 200
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.63 E-value=56 Score=27.92 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.6
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~ 388 (657)
.++.|-|++.. .+..+|++.|+.|..+. |+.+. ..|++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~ 60 (104)
T 1wex_A 16 PVVHVRGLCES---------VVEADLVEALEKFGTICYVMMMP----FKRQALVEFEN 60 (104)
T ss_dssp SEEEEESCCSS---------CCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECC
Confidence 35778898642 35788999999999875 44443 26899999986
No 201
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.54 E-value=1.2e+02 Score=32.91 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=29.0
Q ss_pred cHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHH
Q 006189 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSI-----------VSEKLRETMEE 512 (657)
Q Consensus 459 SisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e-----------~s~sL~r~mEE 512 (657)
.++--|...+++|...-+.|++++..+. +.++.|...+++ .+.+.++|+++
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~---~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~ 92 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIE---YLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEE 92 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccccCCCCCchhhHHHHHHHHHHH
Confidence 3444556666655444445555555444 555555555443 36777788887
No 202
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=38.18 E-value=28 Score=30.24 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred HHHHHHhHHHHHHhH
Q 006189 514 RIVKQRTKMQHEQNK 528 (657)
Q Consensus 514 ~i~r~k~kl~~~~ne 528 (657)
.||.+-.+++|.||+
T Consensus 38 ~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 38 QTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 466678889999986
No 203
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=37.80 E-value=45 Score=32.33 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=39.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccC--c-ceeeeccCC-CC-CcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p-~kv~~l~g~-~G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
.+.|-|++.. .+...|++.|+.|. . ..|+++.++ .| ..||+.|.|...-. -..|+.
T Consensus 70 ~lfVgnL~~~---------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 70 ALYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 4668888653 25778999999998 4 467777774 44 48999999987543 344444
No 204
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=37.79 E-value=40 Score=32.50 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=34.2
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
.++.|-|++.. .+..+|++.|+.|.++. |+.+ .+..|++.|+|...-
T Consensus 208 ~~l~v~nl~~~---------~~~~~l~~~F~~~G~i~~v~~~---~~~~g~afV~f~~~~ 255 (282)
T 3pgw_A 208 HILFLTNLPEE---------TNELMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFDNEV 255 (282)
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHhcCCeEEEEEe---cCCCcEEEEEeCCHH
Confidence 45778888642 35788999999998875 4444 333689999998753
No 205
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=37.58 E-value=24 Score=29.87 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred eeccCCCCCCCccccccCchhhhhhccc-cC---c-----hhhhhHHHHHHHHHH
Q 006189 252 WHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLDE 297 (657)
Q Consensus 252 f~CP~C~gkkk~~D~Y~dl~~LLqHA~g-vG---a-----k~ka~HrALa~lLe~ 297 (657)
=.||||..+-..+| |+|.. ||.+=.+ .| . --...||.|++-+..
T Consensus 9 k~C~fc~~~~~~iD-Yknv~-lL~~Fis~~GkIlprr~TGlc~k~QR~l~~AIKr 61 (75)
T 3i1m_R 9 KFCRFTAEGVQEID-YKDIA-TLKNYITESGKIVPSRITGTRAKYQRQLARAIKR 61 (75)
T ss_dssp -----------CCS-TTCHH-HHGGGBCTTCCBCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCcCC-cCCHH-HHHHHcCcCCCCcCccccccCHHHHHHHHHHHHH
Confidence 46999987755689 99554 5555333 34 1 233677777777664
No 206
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=37.52 E-value=52 Score=28.36 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=35.6
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++ .++.+..+ .| ++|++.|.|...
T Consensus 89 ~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 89 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEECCCCCC---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 5778888642 3578899999999986 46666553 34 488999999874
No 207
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.14 E-value=25 Score=28.42 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=32.2
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCc-ceeeeccCCCCCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-VRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p-~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
+.|-|++.. .+..+|++.|+.|.+ +....+. +.|++.|.|...-
T Consensus 11 l~V~nLp~~---------~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 11 LYIGNLSPA---------VTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp EEEECCCTT---------CCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHH
Confidence 567888653 357889999999998 5554442 4789999998643
No 208
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=36.22 E-value=5e+02 Score=29.06 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 484 RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQE 563 (657)
Q Consensus 484 qIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~e 563 (657)
.-....+|.+.+..+++..-+++.+.|.- ..+.-.+ -+.+.++-+++.+-..+|+.+.+..-..+---|+.|.
T Consensus 108 ~d~~~~khn~~I~~k~g~~l~~v~~~~~~------~~~~e~~-e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~ 180 (526)
T 3iyk_A 108 NELVRLKYNDKIKEKFGKELEEVYNFMNG------EANAEIE-DEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEI 180 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555566666665554555444432 2222221 1234566677777777777654443333333333332
Q ss_pred HHHHhhhcCCCCChhhhHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 006189 564 REKVKQSIANPKNTEDYKLRAEEI-AKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRR 621 (657)
Q Consensus 564 rek~~~~n~~~~~~e~~~~r~e~~-~kf~~~Q~ke~e~f~ae~~kL~~~h~~k~~~lkk 621 (657)
+++ +.+-+.+++++ ++|-.++. -+| +||+-|+++-=+..+-|--
T Consensus 181 ~~R----------t~dE~~mi~~yr~k~~aL~~-aIe---~Er~~~~EEAIqe~~dmsa 225 (526)
T 3iyk_A 181 GER----------THAETVMVKEYRDKIDALKN-AIE---VERDGMQEEAIQEIAGMTA 225 (526)
T ss_pred Hhh----------cHHHHHHHHHHHHHHHHHHH-HHH---HHHhHHHHHHHHHHhcchH
Confidence 222 22223344443 33333443 233 6666666655555544443
No 209
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=36.11 E-value=51 Score=33.97 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHhHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k~kl~~~~ 526 (657)
-++..+..|.++|....+++..+|.+..+...++.-+..++..+++-.||||.+
T Consensus 213 yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (268)
T 2yo3_A 213 YTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLHHHH 266 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Confidence 588899999999999999999999999999999988887877677777777754
No 210
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.99 E-value=50 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.5
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
.+.|-|++.. .+..+|++.|+.|.++. ++.. .+++.|.|...
T Consensus 11 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~ 53 (90)
T 2dnp_A 11 KIFVGNVSAA---------CTSQELRSLFERRGRVIECDVV------KDYAFVHMEKE 53 (90)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCH
Confidence 4668888652 35788999999999864 4444 34999999863
No 211
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=35.50 E-value=42 Score=29.42 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=32.9
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCccee---eecc----CCCC-CcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRA---RHSY----GPQG-HRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv---~~l~----g~~G-H~G~aVV~F~~d 389 (657)
.+.|-|++.. .+...|++.|+.|.++.. ++.+ ...| +.|++.|.|..-
T Consensus 47 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~ 102 (143)
T 3egn_A 47 RIYVKNLAKH---------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 102 (143)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCH
Confidence 4678898642 357889999999988642 1111 1233 589999999754
No 212
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.35 E-value=4.9e+02 Score=28.65 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006189 481 LKNRVVKEQRHSKALEA 497 (657)
Q Consensus 481 L~nqIe~knk~lqeLE~ 497 (657)
|+..+..+++.+..++.
T Consensus 126 Iq~slk~~Q~Qi~en~n 142 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDI 142 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhh
Confidence 33333333333333333
No 213
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.96 E-value=17 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=17.2
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|..
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2els_A 7 GKIFTCEYCNK-----V-FKFKHSLQAHLR 30 (36)
T ss_dssp CCCEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCCEECCCCCc-----e-eCCHHHHHHHHH
Confidence 57899999963 2 554677778743
No 214
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.85 E-value=17 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=16.1
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
..|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGK-----R-FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCC-----E-ESCHHHHHHHHT
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999963 2 554677888843
No 215
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=34.21 E-value=17 Score=22.06 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=15.5
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+|.|+.|+. . |.....|..|-.
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPK-----R-FMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSC-----E-ESCSHHHHHHHT
T ss_pred CccCCCCCc-----h-hCCHHHHHHHHH
Confidence 589999973 2 554677888843
No 216
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.12 E-value=18 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=14.4
Q ss_pred eeeccCCCCCCCccccccCchhhhhhc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
.|.|+.|+.. |.....|..|-
T Consensus 2 ~~~C~~C~~~------f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK------FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC------CCTTTHHHHHH
T ss_pred CCcCCCCCcc------cCCHHHHHHHH
Confidence 5899999732 44456777774
No 217
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=34.03 E-value=47 Score=30.10 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~r 398 (657)
++.|-|++.. ..+...|++.|+.|+++ .++.+..+ .|++.|.|...- .-..|+.
T Consensus 5 ~l~v~nlp~~--------~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~-~a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGN-QAQLAMS 59 (198)
T ss_dssp EEEEECCCSS--------SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTH-HHHHHHH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHH-HHHHHHH
Confidence 4667888641 13468899999999886 45566554 779999998643 3334443
No 218
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=33.43 E-value=20 Score=21.66 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=15.4
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~------f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR------SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC------CSCSHHHHHHHH
T ss_pred CccCCCCCCc------cCCHHHHHHHHH
Confidence 5899999632 444678888843
No 219
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=33.25 E-value=16 Score=30.03 Aligned_cols=57 Identities=18% Similarity=0.012 Sum_probs=38.0
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCC--CCcceEEEEeCCCccchHHHHH
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~--GH~G~aVV~F~~dwsGf~nA~r 398 (657)
-.+.|-|++.. .+..+|++.|+.|.++..+.+.... -+.|++.|.|... ..-..|+.
T Consensus 18 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 76 (101)
T 1fj7_A 18 FNLFIGNLNPN---------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALE 76 (101)
T ss_dssp EEEEEECCCTT---------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHh
Confidence 35778898653 3578899999999887554443322 3589999999763 33444444
No 220
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=32.79 E-value=57 Score=29.79 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=35.1
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccC--cc-eeeeccCC-CC-CcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--AV-RARHSYGP-QG-HRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p~-kv~~l~g~-~G-H~G~aVV~F~~d 389 (657)
-.+.|-|++.. .+...|++.|+.|+ .+ .|+...++ .| ..||+.|.|...
T Consensus 56 ~~lfVgnLp~~---------~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 56 AAVYVGSFSWW---------TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 35667887642 35788999999998 33 56666664 34 489999999753
No 221
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=32.66 E-value=32 Score=29.93 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=27.7
Q ss_pred eeeccCCCCCCCccccccCchhhhhhccc-cC---c-----hhhhhHHHHHHHHHH
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLDE 297 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~g-vG---a-----k~ka~HrALa~lLe~ 297 (657)
.=.||||..+-..+| |+|. +||.+=.+ .| . --...||.|++-+..
T Consensus 19 ~k~C~~c~~~~~~iD-YKnv-~lL~~Fise~GkIlprriTGlc~k~QR~l~~AIKr 72 (88)
T 2vqe_R 19 KAKVKATLGEFDLRD-YRNV-EVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKR 72 (88)
T ss_dssp SCCTTTSCCCEETTC-TTCH-HHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCcCC-cCCH-HHHHHHcccCCCCCchhhcCCCHHHHHHHHHHHHH
Confidence 346999987644578 9965 56665443 34 1 223566777766653
No 222
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.57 E-value=3.3e+02 Score=25.89 Aligned_cols=52 Identities=6% Similarity=0.042 Sum_probs=32.6
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006189 518 QRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS 570 (657)
Q Consensus 518 ~k~kl~~~~neE~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~ 570 (657)
.|.+..+.-+.|+.-+|-.+ .....-+..-.+++..+.+++.+.+.+.+-..
T Consensus 93 eK~K~~e~l~DEl~aLqlq~-n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 93 LKNKNTERLNAALISGTIEN-NVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777777666553 33334444555677888888887655444333
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=32.44 E-value=29 Score=38.13 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=28.5
Q ss_pred ChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 353 GNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 353 s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
|-.+|.++|+.|+|+.-.+.|-..| -++||+|...-
T Consensus 65 ~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 65 SENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp --CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---
T ss_pred CHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHH
Confidence 5678999999999999999998778 59999998753
No 224
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=32.11 E-value=18 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=14.5
Q ss_pred eeeccCCCCCCCccccccCchhhhhhc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
.|.|+.|+. . |.....|..|-
T Consensus 2 ~~~C~~C~~-----~-f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTR-----A-FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCC-----B-CSSHHHHHHHH
T ss_pred CeECCCCCc-----c-cCCHHHHHHHH
Confidence 589999963 2 45466777774
No 225
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.04 E-value=19 Score=23.21 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=16.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
..+|.|+.|+. . |.....|..|-
T Consensus 7 ~~~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elr_A 7 GKTHLCDMCGK-----K-FKSKGTLKSHK 29 (36)
T ss_dssp CSSCBCTTTCC-----B-CSSHHHHHHHH
T ss_pred CCCeecCcCCC-----C-cCchHHHHHHH
Confidence 67899999963 2 55466787774
No 226
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.64 E-value=20 Score=23.18 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=16.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+. . |.....|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSY-----A-SAIKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHH
Confidence 56899999963 2 55466777774
No 227
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=31.62 E-value=87 Score=27.15 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.2
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
++-|-|+|.. .+..+|++.|+.|+++. |+.+- ..|+|.|+|...
T Consensus 23 ~l~V~NLp~~---------~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~ 67 (100)
T 3r27_A 23 VVHIRGLIDG---------VVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDV 67 (100)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCH
Confidence 4667788642 35788999999999874 44443 368999999864
No 228
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=23 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=16.3
Q ss_pred CCeeeccCCCCCCCccccccCc-hhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGL-QPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl-~~LLqHA 277 (657)
..+|.|+.|+. . |... ..|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~~L~~H~ 30 (37)
T 2elp_A 7 GRAMKCPYCDF-----Y-FMKNGSDLQRHI 30 (37)
T ss_dssp CCCEECSSSSC-----E-ECSSCHHHHHHH
T ss_pred CCCeECCCCCh-----h-hccCHHHHHHHH
Confidence 57899999963 2 5534 6787774
No 229
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=31.45 E-value=56 Score=30.90 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=33.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
++.|-|++.. ..+..+|++.|+.|.++ .++..... .|++.|.|..-
T Consensus 36 ~l~V~nLp~~--------~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~ 82 (229)
T 2adc_A 36 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADG 82 (229)
T ss_dssp EEEEESCCTT--------TCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCH
Confidence 4668898651 12468899999999886 45666554 77999999863
No 230
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.99 E-value=15 Score=22.53 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=15.4
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
.+|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRA-----G-CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTE-----E-ESCHHHHHHHH
T ss_pred cCcCCCCCCc-----c-cCCHHHHHHHH
Confidence 4799999963 2 55466777774
No 231
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.51 E-value=26 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=18.1
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.+..|.|+.|+. . |.....|..|..
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2yu5_A 9 GENPFKCSKCDR-----V-FTQRNYLVQHER 33 (44)
T ss_dssp CCCSEECSSSSC-----E-ESSSHHHHHHHH
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHhH
Confidence 367899999973 2 555678888854
No 232
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.00 E-value=22 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 28 (35)
T 2elx_A 5 SSGYVCALCLK-----K-FVSSIRLRSHIR 28 (35)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeECCCCcc-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554667777743
No 233
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.71 E-value=2.6e+02 Score=23.85 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHhHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 006189 501 IVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRI 544 (657)
Q Consensus 501 e~s~sL~r~mEEn~i~r~k~kl~~~~neE~~kmQ~~a~~~~~rI 544 (657)
.+..+|++.|.| +-...++.-+-++.+|+..++-+++|
T Consensus 7 AVeDKLRrrl~E------~~~q~qaEl~sLrrT~~EL~~G~~KL 44 (78)
T 3iv1_A 7 AVSDKLRWRMKE------EMDRAQAELNALKRTEEDLKKGHQKL 44 (78)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHhhhHHH
Confidence 455566666666 44445555555666666665555544
No 234
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=29.69 E-value=52 Score=29.00 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=53.3
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-----CC-cceEEEEeCCCccchHHHHHHHHHHhh
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-----GH-RGMSVLIFESSAGGYLEAERLHKHFAE 405 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-v~~l~g~~-----GH-~G~aVV~F~~dwsGf~nA~rLekhFe~ 405 (657)
+++|.|+.+..+ +.-.-..+|++.|+.|+++. |++.-.+. |+ .|++.|+|...- +|.+--+.+.
T Consensus 22 vl~L~Nm~~~~e----l~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e----~A~~Ai~~Ln- 92 (118)
T 3ue2_A 22 VMVLRNMVDPKD----IDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS----ETHKAIQALN- 92 (118)
T ss_dssp EEEEESCSCGGG----CCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHH----HHHHHHHHHT-
T ss_pred EEEEECCCCHHH----HHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHH----HHHHHHHHHC-
Confidence 478899866322 11112578999999999974 65555443 33 599999998753 3333222222
Q ss_pred cCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCc
Q 006189 406 QGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQ 445 (657)
Q Consensus 406 qg~GRkdW~~~~r~~~~~pG~~~~LYGWlAradDyd~~d~ 445 (657)
|| |. .++.|..-.+..++|...+.
T Consensus 93 ---Gr--~f-----------~GR~i~v~~~~~~~f~~~~~ 116 (118)
T 3ue2_A 93 ---GR--WF-----------AGRKVVAEVYDQERFDNSDL 116 (118)
T ss_dssp ---TC--EE-----------TTEECEEEEECHHHHHTTCC
T ss_pred ---CC--EE-----------CCcEEEEEEcChHhcccccc
Confidence 11 22 25677777778888776543
No 235
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.41 E-value=28 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eoy_A 10 EKCFKCNKCEK-----T-FSCSKYLTQHER 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESSSHHHHHHHT
T ss_pred CCCEECcCCCC-----c-CCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 236
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.35 E-value=1.3e+02 Score=23.14 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 006189 488 EQRHSKALEATFSIVSEKLRETMEENRIVKQR 519 (657)
Q Consensus 488 knk~lqeLE~k~~e~s~sL~r~mEEn~i~r~k 519 (657)
.....++||.++.++.+++.-+.-||.+||+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34556677777777777777777888887763
No 237
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.11 E-value=25 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLS-----A-FTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeeCCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554677888854
No 238
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.04 E-value=26 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=16.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+.. |.....|..|-
T Consensus 10 ~~~~~C~~C~k~------f~~~~~L~~H~ 32 (44)
T 2eou_A 10 KTTSECQECGKI------FRHSSLLIEHQ 32 (44)
T ss_dssp SCCCCCTTTCCC------CSSHHHHHHHH
T ss_pred CcCeECCCCCcc------cCCHHHHHHHH
Confidence 678999999732 55466777774
No 239
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.92 E-value=1.1e+02 Score=31.70 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 006189 534 QEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQS-IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFH 612 (657)
Q Consensus 534 Q~~a~~~~~rIi~e~~~~kE~~FEkLqq~erek~~~~-n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~kL~~~h 612 (657)
...++++..+.++.-.... ++|+.+.++-++++.+. |+.... .++++.-+..-.+|+++++.+++.+.+..
T Consensus 144 ~~~~~~y~~~~Y~~fl~~~-d~~~~~~~e~~~~~~~~~n~~~~e-------ie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 144 NKLFLDYTIKCYESFMSGA-DSFDEMNAELQSKLKDLFNVDAFK-------LESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTC-SCCHHHHHHHHHHHHHHHTCCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3456777777777777776 68899988877777665 333222 23333322222235666666666666654
Q ss_pred hHhHH
Q 006189 613 GEKMD 617 (657)
Q Consensus 613 ~~k~~ 617 (657)
.+++.
T Consensus 216 ~~rl~ 220 (315)
T 2ve7_A 216 AERLK 220 (315)
T ss_dssp HTTTT
T ss_pred HHHHH
Confidence 44433
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.72 E-value=57 Score=28.06 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=33.4
Q ss_pred CeEEEEeccc-ccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 332 PMVIIMNTRL-DKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 332 WmGII~Nt~t-e~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.++-|-|++. . .+..+|++.|+.|..+ .|+.+.+ .|++.|+|...-
T Consensus 16 ~~l~V~nLp~~~---------~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~ 63 (102)
T 1x4d_A 16 RVVHIMDFQRGK---------NLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTE 63 (102)
T ss_dssp CEEEEESCCCSS---------SHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHH
T ss_pred CEEEEeCCCCCc---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHH
Confidence 4566888865 2 2467899999999986 4666543 379999998754
No 241
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=28.23 E-value=3.5e+02 Score=27.18 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHhHHHHHHh
Q 006189 475 NQQLIYLKNRVVKEQRHSKALEATFS----IVSEKLRETMEENRIVKQRT 520 (657)
Q Consensus 475 nqlv~~L~nqIe~knk~lqeLE~k~~----e~s~sL~r~mEEn~i~r~k~ 520 (657)
+.+|.-|..+|+.-.+.+..++..|. ....+|.+.+.|.+-+|+|.
T Consensus 102 ~~li~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~ 151 (253)
T 2ykt_A 102 NELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKS 151 (253)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Confidence 56788899999999999988866554 34566777777755555543
No 242
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.10 E-value=23 Score=21.61 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=14.7
Q ss_pred eeeccCCCCCCCccccccCchhhhhh
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqH 276 (657)
.|.|+.|+. . |.....|..|
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNR-----A-FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCC-----B-CSSSHHHHHH
T ss_pred CcCCcccCc-----c-cCChHHHHHH
Confidence 589999963 2 5546788888
No 243
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=27.94 E-value=3.9e+02 Score=25.18 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVS 503 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s 503 (657)
..-+++..+...|......|+.|+.-+....
T Consensus 51 P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ek 81 (141)
T 3okq_A 51 PAKKKLETVSKDLENAQADVLKLQEFIDTEK 81 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5678888888888888888888888777543
No 244
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=27.69 E-value=87 Score=29.19 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~--GH~G~aVV~F~~dw 390 (657)
++.|-|++... +.+.|++.|+.|.++ .|+.+..+. -+.|++.|.|..-.
T Consensus 17 tlfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHPDV---------TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCTTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH
Confidence 35678887533 578899999999986 466666543 35899999998643
No 245
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=27.58 E-value=6.2e+02 Score=27.45 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHhHHHHHHhHHHHHH
Q 006189 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFS-----------IVSEKLRETMEENRIVKQRTKMQHEQ 526 (657)
Q Consensus 458 KSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~-----------e~s~sL~r~mEEn~i~r~k~kl~~~~ 526 (657)
-+++--|...++ +-..+|..+.|.=....++++.|..++. ..++.=++||||... -+.++..+
T Consensus 30 ~kye~~V~~~l~---~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~---~~~~~~~~ 103 (411)
T 3ghg_C 30 STYQTKVDKDLQ---SLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMK---YEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHhccchhhHHH---HHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHH---HHHHHHhh
Confidence 344555555555 3334444444444444555666665543 334455667777222 24444444
Q ss_pred hHHHHHHHHH
Q 006189 527 NKEEMDFQEQ 536 (657)
Q Consensus 527 neE~~kmQ~~ 536 (657)
...|+.+|..
T Consensus 104 ~~~i~~l~~~ 113 (411)
T 3ghg_C 104 DSSIRYLQEI 113 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445444443
No 246
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.58 E-value=28 Score=22.58 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=16.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+. . |.....|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elq_A 7 GKPFKCSLCEY-----A-TRSKSNLKAHM 29 (36)
T ss_dssp CCSEECSSSSC-----E-ESCHHHHHHHH
T ss_pred CCCccCCCCCc-----h-hCCHHHHHHHH
Confidence 57899999963 2 55466777774
No 247
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.52 E-value=95 Score=26.25 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=23.4
Q ss_pred cccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006189 455 FEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFS 500 (657)
Q Consensus 455 gdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~ 500 (657)
|.|+.++++......++...+.++.-|..+|..+...+++|...|+
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444443334555555555555555555555555443
No 248
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.15 E-value=31 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.600 Sum_probs=17.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enh_A 10 EKPYECDVCRK-----A-FSHHASLTQHQR 33 (46)
T ss_dssp SSSCBCTTTCC-----B-CSSSHHHHHHGG
T ss_pred CCCcCCCCcCc-----h-hCCHHHHHHHHH
Confidence 67899999973 2 554678888854
No 249
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=27.07 E-value=65 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
+.|-|+|.. .+..+|++.|+.| ++ .++.. -+.|++.|.|...
T Consensus 8 l~V~nLp~~---------~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~ 50 (88)
T 1wg1_A 8 ILVKNLPQD---------SNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNG 50 (88)
T ss_dssp EEEESCCSS---------CCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCH
Confidence 567788642 3578899999999 54 34432 5689999999753
No 250
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.85 E-value=31 Score=23.82 Aligned_cols=24 Identities=17% Similarity=0.567 Sum_probs=16.9
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eoh_A 10 KKPYECKECRKT------FIQIGHLNQHKR 33 (46)
T ss_dssp SCSCCCSSSCCC------CSSHHHHHHHHH
T ss_pred CCCcCCCCcCch------hCCHHHHHHHHH
Confidence 678999999732 454667777743
No 251
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.51 E-value=24 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=14.6
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.|.|+.|+. . |.....|..|-.
T Consensus 1 ~~~C~~C~k-----~-f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCER-----S-FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CccCCCCCC-----c-CCCHHHHHHHHH
Confidence 478999963 2 554667888853
No 252
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.47 E-value=30 Score=22.45 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=17.1
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
..+|.|+.|+. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICER-----K-FKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667778854
No 253
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.25 E-value=29 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eon_A 10 EKPYKCQVCGK-----A-FRVSSHLVQHHS 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHTT
T ss_pred CcccCCCCCCc-----c-cCcHHHHHHHHH
Confidence 67899999963 2 555778888854
No 254
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=32.09 E-value=14 Score=31.33 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=36.5
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcce---------eeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------v~~l~g~~-G-H~G~aVV~F~~dwsGf~nA~r 398 (657)
+.|-|++... +...|++.|+.|.++. ++...++. | ..|++.|.|...-.. ..|+.
T Consensus 10 l~V~nLp~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 10 IFVQGLGENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 4567776432 4567889999998875 56666543 3 489999999865433 33443
No 255
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.11 E-value=32 Score=23.76 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=17.1
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
....|.|+.|+. . |.....|..|-
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2em2_A 9 GEKPFKCKECGK-----A-FRQNIHLASHL 32 (46)
T ss_dssp CCCSEECSSSCC-----E-ESSHHHHHHHH
T ss_pred CCCCEECCcCCc-----h-hCCHHHHHHHH
Confidence 367899999963 2 55466777774
No 256
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.06 E-value=33 Score=23.59 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em7_A 10 EKPYKCEECGK-----G-FICRRDLYTHHM 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CcCccCCCccc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 257
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.01 E-value=6.4e+02 Score=27.17 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHhHhHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh
Q 006189 607 RLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 645 (657)
Q Consensus 607 kL~~~h~~k~~~lkkr~~e~~~~leke~~~~l~~lm~k~ 645 (657)
.++..++..+..|...+-.....|+ ++...+.+|+.+-
T Consensus 98 ~~~~~~~~~i~~l~~~~~~~~~~i~-~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 98 NTILAHENTIQQLTDMHIMNSNKIT-QLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTS
T ss_pred HHhcchHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHh
Confidence 3777777777777777665554443 4566777777654
No 258
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.94 E-value=7.2e+02 Score=27.62 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=41.2
Q ss_pred cccccCCCCccccccchhccccccHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Q 006189 436 LKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRI 515 (657)
Q Consensus 436 radDyd~~d~~siGe~rkkgdLKSisEiv~E~~Rqm~k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~mEEn~i 515 (657)
.-+|+..+=| -| |.|+. +..+..| .-.+-|..|+|.|..-++.....-.-+..+...|+..+.+
T Consensus 38 aDeDwGvkCP--SG-----CrLqg---lL~kqer---dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q--- 101 (491)
T 1m1j_A 38 VDDDWGTKCP--SG-----CRMQG---IIDDTDQ---NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEG--- 101 (491)
T ss_dssp CTTSTTTEEC--CS-----TTHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccccCCCC--Cc-----cchhh---HHHHhhh---hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhh---
Confidence 5566655544 22 55543 4444444 3334455555555555555444445555555555555444
Q ss_pred HHHHhHHHHHHhHHHHHHH
Q 006189 516 VKQRTKMQHEQNKEEMDFQ 534 (657)
Q Consensus 516 ~r~k~kl~~~~neE~~kmQ 534 (657)
+...+....+|.+++++-+
T Consensus 102 ~~dndn~~~e~S~eLe~ri 120 (491)
T 1m1j_A 102 AQQLDENYGHVSTELRRRI 120 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHH
Confidence 2234455555555554433
No 259
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.56 E-value=34 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=17.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2ytp_A 10 ERHYECSECGK-----A-FARKSTLIMHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCcCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 260
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.30 E-value=39 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (47)
T 2epx_A 10 KKPYECIECGK-----A-FIQNTSLIRHWR 33 (47)
T ss_dssp CCSBCCSSSCC-----C-BSSHHHHHHHHT
T ss_pred CCCEECCccCc-----h-hCChHHHHHHhH
Confidence 67899999973 2 555778888854
No 261
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.21 E-value=69 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.3
Q ss_pred cChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 006189 352 MGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 352 ~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.+..+|++.|+.|.++.-..+ .-+.|++.|.|...
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i---~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSM---DPPRNCAFVTYEKM 59 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESSH
T ss_pred CCHHHHHHHHhhCCCEEEEEe---cCCCCEEEEEECCH
Confidence 367889999999998754333 14578999999863
No 262
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.13 E-value=34 Score=23.28 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2emb_A 10 RKRYECSKCQA-----T-FNLRKHLIQHQK 33 (44)
T ss_dssp CSSEECTTTCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999973 2 555678888854
No 263
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.93 E-value=15 Score=22.44 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=15.5
Q ss_pred CeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 250 ~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
.+|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~~ 24 (30)
T 2lvr_A 2 KPYVCIHCQR-----Q-FADPGALQRHVR 24 (30)
Confidence 4689999963 2 444567777743
No 264
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=24.81 E-value=1e+02 Score=29.56 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=31.9
Q ss_pred eEEEEecccccCCCCcccccChHHHH----HHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+.|-|++... +..+|+ +.|+.|..+. ++... ..-+.|++.|.|..--
T Consensus 11 ~l~V~nlp~~~---------~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 11 TIYINNLNEKI---------KKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVS 63 (282)
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHH
Confidence 36688887533 345655 7899998874 44443 3336899999997543
No 265
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=24.80 E-value=1.9e+02 Score=27.00 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=30.4
Q ss_pred cChHHHHHHhhccCcc-eeeeccCCCC--CcceEEEEeCC
Q 006189 352 MGNQELLEYFILYAAV-RARHSYGPQG--HRGMSVLIFES 388 (657)
Q Consensus 352 ~s~~eL~d~lsgF~p~-kv~~l~g~~G--H~G~aVV~F~~ 388 (657)
.+-..|+++|+.|+++ .+...+++.. ..|++.|+|..
T Consensus 18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 4688999999999996 5777777764 49999999995
No 266
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.74 E-value=36 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em8_A 9 GEKPYKCVECGK-----G-YKRRLDLDFHQR 33 (46)
T ss_dssp SCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCeECcccCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 554677878843
No 267
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.68 E-value=37 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=17.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (44)
T 2epv_A 10 EKPYECNECGK-----A-FIWKSLLIVHER 33 (44)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeECCCCCc-----c-cCchHHHHHHHh
Confidence 67899999963 2 555678888854
No 268
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=24.61 E-value=89 Score=28.24 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=31.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccC-cc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.++.|-|++.. .+...|++.|+.|+ ++ .++.+.. ..|++.|+|...
T Consensus 121 ~~l~v~nl~~~---------~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCTT---------CCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 45667787642 35788999999887 54 4544442 378999999773
No 269
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.52 E-value=36 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emi_A 10 ERHYECSECGK-----A-FIQKSTLSMHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHHh
Confidence 67899999963 2 554677888843
No 270
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.50 E-value=4.4e+02 Score=25.21 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHH
Q 006189 525 EQNKEEMDFQEQLFKD 540 (657)
Q Consensus 525 ~~neE~~kmQ~~a~~~ 540 (657)
++.++++++.+.++..
T Consensus 71 EQq~ql~~I~~e~r~~ 86 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQ 86 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444454444444
No 271
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=24.46 E-value=31 Score=25.22 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=15.5
Q ss_pred eeeccCCCCCCCccccccCchhhhhh
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqH 276 (657)
-|-||.|.. + +.....|..|
T Consensus 5 GFiCP~C~~-----~-l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCMK-----S-LGSADELFKH 24 (34)
T ss_dssp EEECTTTCC-----E-ESSHHHHHHH
T ss_pred ccCCcHHHH-----H-cCCHHHHHHH
Confidence 499999952 4 6667888888
No 272
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.43 E-value=23 Score=23.13 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.0
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (37)
T 2elo_A 7 GRSYSCPVCEK-----S-FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCEETTTTE-----E-CSSHHHHHHHHH
T ss_pred CCCcCCCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667777743
No 273
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.34 E-value=37 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.663 Sum_probs=17.5
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytf_A 10 EKPFECSECQK-----A-FNTKSNLIVHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCcCCCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555677888843
No 274
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.02 E-value=81 Score=29.86 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred EEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
++|-|++.. .+...|.+.|+.|..+.-..++.+ ..+|++.|+|...-
T Consensus 49 l~VgNL~~~---------vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~ 95 (164)
T 1sjr_A 49 IIVENLFYP---------VTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPV 95 (164)
T ss_dssp EEECSCCSC---------CCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHH
T ss_pred EEEeCcCCC---------CCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHH
Confidence 557787532 357789999999999753334322 25689999997643
No 275
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.89 E-value=33 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=17.0
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+..|.|+.|+. . |.....|..|-.
T Consensus 4 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 27 (39)
T 1njq_A 4 PRSYTCSFCKR-----E-FRSAQALGGHMN 27 (39)
T ss_dssp SSSEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCceECCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667878844
No 276
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.84 E-value=90 Score=27.47 Aligned_cols=48 Identities=10% Similarity=0.146 Sum_probs=34.4
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
..++.|-|++.. +.+..+|++.|+.|..+ .|+.+- ..|++.|+|...-
T Consensus 25 ~~~l~V~NLp~~--------~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~ 73 (112)
T 1x4f_A 25 GRVIHLSNLPHS--------GYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETRE 73 (112)
T ss_dssp CCEEEEESCCCS--------SCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHH
T ss_pred CCEEEEeCCCCc--------cCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHH
Confidence 346778888652 23567899999999986 455542 3689999998754
No 277
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.80 E-value=37 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=18.0
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2elz_A 9 VEKPYKCEDCGK-----G-YNRRLNLDMHQR 33 (46)
T ss_dssp CCSSCBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CCCCeeCcccCc-----h-hCCHHHHHHHHH
Confidence 367899999973 2 554678888854
No 278
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.77 E-value=39 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=17.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2epz_A 10 EKPFDCIDCGK-----A-FSDHIGLNQHRR 33 (46)
T ss_dssp CCSBCCTTTCC-----C-BSSHHHHHHHHT
T ss_pred CCCeECCCCCc-----e-eCCHHHHHHHHH
Confidence 67899999973 2 554677888844
No 279
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.58 E-value=38 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=17.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enf_A 10 EKPYKCNECGK-----V-FTQNSHLVRHRG 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHHT
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888843
No 280
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.57 E-value=35 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2ytb_A 9 EKPYRCDQCGK-----A-FSQKGSLIVHIR 32 (42)
T ss_dssp CCSBCCTTTTC-----C-BSSHHHHHTTGG
T ss_pred CCCeeCCCccc-----h-hCCHHHHHHHHH
Confidence 57899999973 2 555678888854
No 281
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=23.46 E-value=8.2e+02 Score=27.42 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhHHHHHHhhhh
Q 006189 593 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKG 633 (657)
Q Consensus 593 ~Q~ke~e~f~ae~~kL~~~h~~k~~~lkkr~~e~~~~leke 633 (657)
+|..+.++=..| -+||++...+..+|++-+--|+--|..|
T Consensus 176 L~kE~~~Rt~dE-~~mi~~yr~k~~aL~~aIe~Er~~~~EE 215 (526)
T 3iyk_A 176 LQKEIGERTHAE-TVMVKEYRDKIDALKNAIEVERDGMQEE 215 (526)
T ss_pred HHHHHHhhcHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 443333333333 3577888888888886554444444433
No 282
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=23.45 E-value=94 Score=28.11 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCeEEEEecccccCCCCcccccChHHHHHHhh---ccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhcC
Q 006189 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFI---LYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQG 407 (657)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~ls---gF~p~kv~~l~g~~GH~G~aVV~F~~dwsGf~nA~rLekhFe~qg 407 (657)
|||..|+.+.+-...+.. ...-+..|+..+. ||-.. -.+.+.+| . +..|-|=.|-.-|..-.+...|-+++.
T Consensus 11 ~pm~aViFe~~~~~~~~~-Y~~la~~~~~la~~qpGFI~~--Es~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSVKSENDTG-YGETAERMVSLAADQPGFLGV--ESVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEECC-------CHHHHHHHHHHHHSTTEEEE--EEEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEEeCCchhH-HHHHHHHHHHHHhhCCCceEE--EEEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 677777765543332222 2333555665554 45444 46667766 3 445567778888888888999999999
Q ss_pred CChhhhhhhcccccccCCCcceeeeeecccccc
Q 006189 408 TDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDL 440 (657)
Q Consensus 408 ~GRkdW~~~~r~~~~~pG~~~~LYGWlAradDy 440 (657)
.||..|.. .-+.++ ..-..=||+-.+..||
T Consensus 86 ~Gr~~w~~-~y~~rv--~~V~r~y~~~~~~~~~ 115 (122)
T 2go8_A 86 KGRSVWYE-SYAVRV--AKVDRQRLFQENTNDL 115 (122)
T ss_dssp ------CC-EEEEEE--EEECCCCCCCC-----
T ss_pred hHHHHHhc-cCcEEE--EEEEEEecCCCCCcch
Confidence 99999982 111111 0123456665555555
No 283
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=23.23 E-value=1.2e+02 Score=26.77 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=30.4
Q ss_pred eEEEEecccccCCCCcccccChHH----HHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQE----LLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~e----L~d~lsgF~p~k-v~~l~g~~GH~G~aVV~F~~d 389 (657)
++.|-|++..- +... |.+.|+.|+++. |.... ....+|++.|.|..-
T Consensus 31 ~LfV~nL~~~~---------~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINPEV---------PKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCTTS---------CHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCH
Confidence 46788886422 3444 446789999873 43332 234589999999863
No 284
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.22 E-value=50 Score=31.31 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcccCceeecCCCCeeeccCCC
Q 006189 228 RWFKKFFESLESLTVEEINEPARQWHCPACQ 258 (657)
Q Consensus 228 k~f~K~y~~Lk~g~~~~kn~~~~tf~CP~C~ 258 (657)
.||++..+.|++|..-. ....|.||.|+
T Consensus 118 ~~~~~~l~~l~~~~~~~---~~~~~~C~~CG 145 (170)
T 3pwf_A 118 ELYRKAKEKAEKGEDIE---IKKVYICPICG 145 (170)
T ss_dssp HHHHHHHHHHTTTCCCC---CSCEEECTTTC
T ss_pred HHHHHHHHHHhcCCcCC---CCCeeEeCCCC
Confidence 68899999999997642 24689999996
No 285
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.90 E-value=17 Score=21.79 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=14.3
Q ss_pred eeeccCCCCCCCccccccCchhhhhhc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
.|.|+.|+.. |.....|..|-
T Consensus 2 p~~C~~C~k~------f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR------FVQSSQLANHI 22 (26)
Confidence 5899999732 44456777774
No 286
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.12 E-value=33 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhh
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTH 276 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqH 276 (657)
..+|.|+.|+. . |.....|..|
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~L~~H 28 (37)
T 2elm_A 7 GHLYYCSQCHY-----S-SITKNCLKRH 28 (37)
T ss_dssp SCEEECSSSSC-----E-EECHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHH
Confidence 57899999973 2 5546677777
No 287
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.07 E-value=8.3e+02 Score=27.36 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhH
Q 006189 600 EFVAARDRLIKFHGE 614 (657)
Q Consensus 600 ~f~ae~~kL~~~h~~ 614 (657)
+.+.||..++++++.
T Consensus 534 kme~~~~~~~~e~~~ 548 (592)
T 1f5n_A 534 KMENDRVQLLKEQER 548 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355777777766655
No 288
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=23.00 E-value=97 Score=29.79 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.4
Q ss_pred eEEEEecccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 006189 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (657)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kv~~l~g~~GH~G~aVV~F~~dw 390 (657)
.+.|-|+|.. .+..+|.+.|+.|+...+.. ..+.|++.|.|...-
T Consensus 24 ~l~V~nLp~~---------~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~ 68 (284)
T 3smz_A 24 KILIRGLPGD---------VTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGE 68 (284)
T ss_dssp EEEEECCCTT---------CCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHH
Confidence 5778898753 35778999999998444444 345789999997643
No 289
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.90 E-value=41 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.9
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2eq0_A 9 GEKPYKCHECGK-----V-FRRNSHLARHQL 33 (46)
T ss_dssp CCCCEECTTTCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 555677888843
No 290
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.58 E-value=18 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=14.8
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~------f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKA------FTQASSLIAHVR 23 (29)
Confidence 5899999732 444567777743
No 291
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.85 E-value=44 Score=22.94 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=16.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
+..|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~ 32 (46)
T 2en3_A 10 EKPFQCKECGM-----N-FSWSCSLFKHL 32 (46)
T ss_dssp CCSEECSSSCC-----E-ESSSHHHHHHH
T ss_pred CCCeeCcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 292
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.81 E-value=39 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.483 Sum_probs=17.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2enc_A 10 EKPFKCEECGK-----G-FYTNSQCYSHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCcCCCCCCC-----c-CCChHHHHHHHH
Confidence 67899999963 2 554677888843
No 293
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.68 E-value=39 Score=23.24 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=17.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2emg_A 10 ENPFICSECGK-----V-FTHKTNLIIHQK 33 (46)
T ss_dssp CCSCBCTTTCC-----B-CSSHHHHHHHHT
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999973 2 555678888854
No 294
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=22.58 E-value=48 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=16.9
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2ely_A 10 EKPFKCVECGKG------FSRRSALNVHHK 33 (46)
T ss_dssp CCSBCCSSSCCC------BSSTTHHHHHHH
T ss_pred CCCcccCccCcc------cCCHHHHHHHHH
Confidence 678999999732 454667777743
No 295
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.56 E-value=39 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=17.1
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------F~~~~~L~~H~~ 33 (46)
T 2yti_A 10 EKPYKCNECGKV------FTQNSHLARHRG 33 (46)
T ss_dssp CCTTCCSSSCCC------CSSHHHHHHHHT
T ss_pred CcCeECCCCCcc------cCChhHHHHHhH
Confidence 678999999732 554667878843
No 296
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.41 E-value=41 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yts_A 10 EKPYICNECGK-----S-FIQKSHLNRHRR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCEECCCCCh-----h-hCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 297
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.29 E-value=39 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (41)
T 2ept_A 8 QRVYECQECGK-----S-FRQKGSLTLHER 31 (41)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CCCeECCCCCC-----C-cCCHHHHHHHHH
Confidence 57899999963 2 555678888854
No 298
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.29 E-value=25 Score=30.37 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=9.4
Q ss_pred CeeeccCCCCC
Q 006189 250 RQWHCPACQGG 260 (657)
Q Consensus 250 ~tf~CP~C~gk 260 (657)
..+|||.|++-
T Consensus 25 ~~LRCp~Cqnq 35 (84)
T 2hl7_A 25 QELRCPKCQNQ 35 (84)
T ss_dssp HHEECTTSSSC
T ss_pred HcCcCCCCCCC
Confidence 57999999974
No 299
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=22.20 E-value=37 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=15.3
Q ss_pred eeeccCCCCCCCccccccCchhhhhhcc
Q 006189 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 251 tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+|.|+.|+.. |.....|..|-.
T Consensus 2 p~~C~~C~k~------F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKR------FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCC------CSSHHHHHHHHH
T ss_pred cccCCCCCch------hCCHHHHHHHHH
Confidence 5899999732 454667888843
No 300
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.16 E-value=34 Score=32.82 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcccCceeecCCCCeeeccCCC
Q 006189 228 RWFKKFFESLESLTVEEINEPARQWHCPACQ 258 (657)
Q Consensus 228 k~f~K~y~~Lk~g~~~~kn~~~~tf~CP~C~ 258 (657)
.+|.+..+.|+.|++-.+.. ...|.|+.|+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~-~~~~~C~~CG 162 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQ-ATKWRCRNCG 162 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEE-EEEEEETTTC
T ss_pred HHHHHHHHhhhcccccccCC-CceEEECCCC
Confidence 56777778888887533322 3579999996
No 301
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.14 E-value=42 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=18.1
Q ss_pred CCCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 248 ~~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep0_A 9 GEKPYKCDVCHK-----S-FRYGSSLTVHQR 33 (46)
T ss_dssp TCCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeeCcccCc-----c-cCChHHHHHHHH
Confidence 367899999963 2 555678888854
No 302
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=22.08 E-value=3.7e+02 Score=24.40 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKAL 495 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeL 495 (657)
+.+.++..|+..|+....+++.|
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENM 34 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555544
No 303
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.90 E-value=47 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=16.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+.. |.....|..|-
T Consensus 10 ~k~~~C~~C~k~------F~~~~~L~~H~ 32 (46)
T 2eom_A 10 ERGHRCSDCGKF------FLQASNFIQHR 32 (46)
T ss_dssp CSSCCCSSSCCC------CSSHHHHHHHH
T ss_pred CCCcCCCCCCCe------eCChHHHHHHH
Confidence 678999999732 55466777774
No 304
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.77 E-value=45 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=17.2
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2em3_A 10 EKPYECKVCSK-----A-FTQKAHLAQHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 305
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=21.77 E-value=1.4e+02 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred CeEEEEecccccCCCCcccccChHHHHHHhhccC-cc-eeeeccCCCCCcceEEEEeCCC
Q 006189 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFESS 389 (657)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~-kv~~l~g~~GH~G~aVV~F~~d 389 (657)
.++.|-|++.. .+..+|++.|+.|. .+ .++.+.. ..|++.|+|...
T Consensus 152 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSH
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCH
Confidence 56788888652 25788999999997 44 3444432 368999999873
No 306
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.73 E-value=42 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.562 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytq_A 10 EKPYGCSECGK-----A-FSSKSYLIIHMR 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSCHHHHHHHHT
T ss_pred CCCcCCCccCh-----h-hCChHHHHHHHH
Confidence 67899999973 2 555678888854
No 307
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.70 E-value=39 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.580 Sum_probs=16.9
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2en9_A 10 KKLFKCNECKK-----T-FTQSSSLTVHQR 33 (46)
T ss_dssp SCCCBCTTTCC-----B-CSSHHHHHHHHH
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 308
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.63 E-value=1.2e+02 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006189 529 EEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQ 562 (657)
Q Consensus 529 E~~kmQ~~a~~~~~rIi~e~~~~kE~~FEkLqq~ 562 (657)
.+..||+.+...+. -+.+..+.-+.+.|+++..
T Consensus 343 ~~~~~~~~~~~~~~-~l~~~~~~~~~l~e~~~~~ 375 (575)
T 2i1j_A 343 RLRQMQEEMERSQA-NLLEAQDMILRLEEQLRQL 375 (575)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 34444444333322 3333334444555555543
No 309
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=21.56 E-value=45 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em9_A 10 EKPYNCKECGK-----S-FRWASCLLKHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCeECCcccc-----c-cCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 310
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.54 E-value=45 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.714 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2el6_A 10 VNPYKCSQCEK-----S-FSGKLRLLVHQR 33 (46)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999973 2 555778888854
No 311
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.53 E-value=45 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.629 Sum_probs=16.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2em4_A 10 QRPYECIECGK-----A-FKTKSSLICHR 32 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHH
T ss_pred CcCcCCCCCCC-----c-cCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 312
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.46 E-value=40 Score=23.15 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=17.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2eq1_A 10 EKPYKCNECGKA------FRAHSNLTTHQV 33 (46)
T ss_dssp SCCCCCTTTTCC------CSSHHHHHHHHT
T ss_pred CCCeECCcCChh------hCCHHHHHHHHH
Confidence 678999999632 554677888854
No 313
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.43 E-value=39 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (44)
T 2en7_A 10 MKPYVCNECGKA------FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSCCTTTCCC------CSSHHHHHHHHT
T ss_pred CcCeECCCCCCc------cCCHHHHHHHhh
Confidence 678999999732 554667888854
No 314
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=21.40 E-value=1.4e+02 Score=28.06 Aligned_cols=47 Identities=13% Similarity=0.325 Sum_probs=34.2
Q ss_pred eEEEEecc-cccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCcc
Q 006189 333 MVIIMNTR-LDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG 391 (657)
Q Consensus 333 mGII~Nt~-te~dddgr~~G~s~~eL~d~lsgF~p~-kv~~l~g~~GH~G~aVV~F~~dws 391 (657)
++.|-|++ .. ++...|.+.|+.|..+ .|+.+.. +.|++.|.|...-.
T Consensus 6 ~l~V~nL~~~~---------~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~ 54 (205)
T 3tyt_A 6 VLMVYGLDQSK---------MNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYA 54 (205)
T ss_dssp EEEEECCCTTT---------CCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHH
Confidence 45677876 32 3567899999999886 4666653 57899999987543
No 315
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.34 E-value=41 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eow_A 10 EKPYKCNECGK-----A-FRARSSLAIHQ 32 (46)
T ss_dssp CCCEECTTSCC-----E-ESSHHHHHHHH
T ss_pred CCCeeccccCC-----h-hcCHHHHHHHH
Confidence 67899999963 2 55466777774
No 316
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25 E-value=48 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yrj_A 10 EKPYRCGECGK-----A-FAQKANLTQHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 317
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=48 Score=22.84 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=16.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+.. |.....|..|-
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~ 32 (46)
T 2emz_A 10 ERPFKCNECGKG------FGRRSHLAGHL 32 (46)
T ss_dssp CCSCCCSSSCCC------CSSHHHHHHHH
T ss_pred CCCeECCCCCcc------cCCHHHHHHHH
Confidence 678999999632 55466777773
No 318
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.16 E-value=35 Score=23.56 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|++|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eoz_A 10 EKPYSCNVCGK-----A-FVLSAHLNQHL 32 (46)
T ss_dssp CCSEEETTTTE-----E-ESSHHHHHHHH
T ss_pred CCCeECcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55466777773
No 319
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.14 E-value=41 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.2
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+. . |.....|..|-
T Consensus 30 ~~~~~C~~C~~-----~-f~~~~~l~~H~ 52 (57)
T 3uk3_C 30 EKPYKCEFCEY-----A-AAQKTSLRYHL 52 (57)
T ss_dssp CCCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCcCCCCCcc-----h-hCCHHHHHHHH
Confidence 56799999963 2 55466777773
No 320
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=21.09 E-value=24 Score=30.94 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=9.3
Q ss_pred CeeeccCCCCC
Q 006189 250 RQWHCPACQGG 260 (657)
Q Consensus 250 ~tf~CP~C~gk 260 (657)
.++|||.|++-
T Consensus 22 ~~LRCpvCqnq 32 (90)
T 2kw0_A 22 EELRCPKCQNN 32 (90)
T ss_dssp HSSBCSCTTSC
T ss_pred HcCcCCCCCCC
Confidence 57899999974
No 321
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.02 E-value=37 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.542 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2en2_A 9 EKPYKCETCGA-----R-FVQVAHLRAHVL 32 (42)
T ss_dssp SCSEECTTTCC-----E-ESSHHHHHHHTH
T ss_pred CCCEeCCCcCh-----h-hCCHHHHHHHHH
Confidence 67899999973 2 554677888843
No 322
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.91 E-value=42 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2eof_A 10 EKPYECNECQK-----A-FNTKSNLMVHQR 33 (44)
T ss_dssp CCSEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHhHHHHHHH
Confidence 67899999963 2 555677877743
No 323
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.82 E-value=47 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em5_A 10 TKSHQCHECGR-----G-FTLKSHLNQHQR 33 (46)
T ss_dssp SCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCcCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 324
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.73 E-value=46 Score=22.93 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emf_A 10 GKHFECTECGK-----A-FTRKSTLSMHQK 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 325
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=46 Score=22.83 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=17.6
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep3_A 10 EKPYRCAECGK-----A-FTDRSNLFTHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 326
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.70 E-value=40 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (42)
T 2el5_A 8 ENPYECSECGK-----A-FNRKDQLISHQR 31 (42)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCccCCCcCh-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554677888854
No 327
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.67 E-value=45 Score=22.81 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=17.7
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eme_A 10 EKPYVCDYCGK-----A-FGLSAELVRHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCh-----h-hCCHHHHHHHHH
Confidence 67899999973 2 555678888854
No 328
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=20.66 E-value=6e+02 Score=24.80 Aligned_cols=67 Identities=31% Similarity=0.454 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHhHhHHHHHHHhHHHHHHhh
Q 006189 553 EENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDR-LIKFHGEKMDAMRRRHWEEEVELE 631 (657)
Q Consensus 553 E~~FEkLqq~erek~~~~n~~~~~~e~~~~r~e~~~kf~~~Q~ke~e~f~ae~~k-L~~~h~~k~~~lkkr~~e~~~~le 631 (657)
|...+.+|++ =+.-.|..-+..++-.|+||--|.--. +-+++ ||+ .|-.-++-+.-..-.+||
T Consensus 130 ekKvn~aq~k------Ls~L~P~dP~Y~K~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 193 (201)
T 3u0c_A 130 ENKINQIQTR------LSELDPESPEKKKLSREEIQLTIKKDA-------AVKDRTLIE---QKTLSIHSKLTDKSMQLE 193 (201)
T ss_dssp HHHHHHHHHH------HHTSCSSCTTHHHHHHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HhcCCCCCCccccccHHHHhhhhhccc-------hhhhhhhHH---hhhhhHHhhhchHHHHHH
Confidence 4444444444 235567778888889999998775221 22222 332 344556666667777888
Q ss_pred hhhH
Q 006189 632 KGFD 635 (657)
Q Consensus 632 ke~~ 635 (657)
||+|
T Consensus 194 ~~~~ 197 (201)
T 3u0c_A 194 KEID 197 (201)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8876
No 329
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.62 E-value=46 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=17.4
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ene_A 10 EKPYKCNECGK-----V-FRHNSYLSRHQR 33 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCChHHHHHHHh
Confidence 67899999963 2 554677888844
No 330
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.59 E-value=38 Score=23.31 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=17.8
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ysp_A 10 EKPYKCEKCGK-----G-YNSKFNLDMHQK 33 (46)
T ss_dssp CCSEEETTTTE-----E-ESCHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 331
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.56 E-value=41 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=16.5
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA 277 (657)
...|.|+.|+.. |.....|..|-
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~ 32 (46)
T 2ytm_A 10 EKPYKCMECGKA------FGDNSSCTQHQ 32 (46)
T ss_dssp CCSSSBTTTTBC------CSSHHHHHHHH
T ss_pred CCCcCCCCCCch------hCCHHHHHHHH
Confidence 678999999732 55466777774
No 332
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.42 E-value=43 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=17.3
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 9 ~~~~~C~~C~k-----~-f~~~~~l~~H~~ 32 (42)
T 2epc_A 9 ETPYLCGQCGK-----S-FTQRGSLAVHQR 32 (42)
T ss_dssp SCCEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHhh
Confidence 67899999963 2 554677887843
No 333
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.34 E-value=48 Score=22.85 Aligned_cols=24 Identities=17% Similarity=0.557 Sum_probs=17.5
Q ss_pred CCeeeccCCCCCCCccccccCchhhhhhcc
Q 006189 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (657)
Q Consensus 249 ~~tf~CP~C~gkkk~~D~Y~dl~~LLqHA~ 278 (657)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yth_A 10 EKPFQCEECGK-----R-FTQNSHLHSHQR 33 (46)
T ss_dssp SSSBCCSSSCC-----C-BSSHHHHHHHGG
T ss_pred CcCCCCCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999973 2 554677888844
No 334
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=20.34 E-value=4.7e+02 Score=28.34 Aligned_cols=86 Identities=10% Similarity=0.244 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HH-hHHHHHHhH-HHHHHhHHHHHHHHHH--HHHHHHHH
Q 006189 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM---EE-NRIVKQRTK-MQHEQNKEEMDFQEQL--FKDQIRII 545 (657)
Q Consensus 473 k~nqlv~~L~nqIe~knk~lqeLE~k~~e~s~sL~r~m---EE-n~i~r~k~k-l~~~~neE~~kmQ~~a--~~~~~rIi 545 (657)
.-++-|..|.+.|+.-.+...+.+..+..+..++...- .. +..+.++.+ |+ +|+.+++... ...+|+.|
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml----~~~~~~~~~~~~~~~~i~~l 110 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKML----EEIMKYEASILTHDSSIRYL 110 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHH----HHHHHHHHHHHhhHHHHHHH
Confidence 66677777777777776666666666666666553321 11 012222222 22 2222222222 23455566
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006189 546 HEARDEKEENFEKLQQQ 562 (657)
Q Consensus 546 ~e~~~~kE~~FEkLqq~ 562 (657)
+.....+.....+|.+.
T Consensus 111 ~~~~~~~~~~i~~L~~~ 127 (411)
T 3ghg_C 111 QEIYNSNNQKIVNLKEK 127 (411)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666665
Done!