BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006191
(657 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM I G T LS A L + LTL Y LP +
Sbjct: 680 ILHNATEYSLVLMDEIGAGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739
Query: 651 AYPAEVH 657
A VH
Sbjct: 740 EGVANVH 746
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM+ I G T LS A L + LTL Y LP +
Sbjct: 679 ILHNATEYSLVLMNEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 738
Query: 651 AYPAEVH 657
A VH
Sbjct: 739 EGVANVH 745
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM I G T LS A L + LTL Y LP +
Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739
Query: 651 AYPAEVH 657
A VH
Sbjct: 740 EGVANVH 746
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM I G T LS A L + LTL Y LP +
Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739
Query: 651 AYPAEVH 657
A VH
Sbjct: 740 EGVANVH 746
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM I G T LS A L + LTL Y LP +
Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739
Query: 651 AYPAEVH 657
A VH
Sbjct: 740 EGVANVH 746
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 595 IVHNSMIFSLVLMHAIAVGIFTIKKLS----TASTLIFPLPVLTLLFNEYCRKRFLPNFI 650
I+HN+ +SLVLM I G T LS A L + LTL Y LP +
Sbjct: 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739
Query: 651 AYPAEVH 657
A VH
Sbjct: 740 EGVANVH 746
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,987,896
Number of Sequences: 62578
Number of extensions: 704052
Number of successful extensions: 1847
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1847
Number of HSP's gapped (non-prelim): 6
length of query: 657
length of database: 14,973,337
effective HSP length: 105
effective length of query: 552
effective length of database: 8,402,647
effective search space: 4638261144
effective search space used: 4638261144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)