Query 006191
Match_columns 657
No_of_seqs 209 out of 948
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 8E-116 2E-120 950.7 51.3 640 2-653 20-723 (827)
2 KOG1134 Uncharacterized conser 100.0 5E-113 1E-117 963.4 53.9 647 5-657 6-673 (728)
3 PF02714 DUF221: Domain of unk 100.0 2.2E-65 4.9E-70 541.4 33.9 318 298-615 1-325 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 3.4E-34 7.4E-39 269.5 13.2 156 5-168 1-157 (157)
5 PF04547 Anoctamin: Calcium-ac 99.1 9E-08 2E-12 106.1 28.5 257 338-615 109-397 (452)
6 PF14703 DUF4463: Domain of un 98.0 8.5E-06 1.8E-10 68.2 4.7 53 226-278 1-85 (85)
7 KOG2513 Protein required for m 97.9 0.0025 5.5E-08 70.0 23.3 261 340-622 260-564 (647)
8 TIGR01659 sex-lethal sex-letha 96.5 0.02 4.3E-07 60.9 11.3 103 185-351 103-213 (346)
9 PLN03134 glycine-rich RNA-bind 96.1 0.034 7.5E-07 51.4 8.9 77 188-328 33-111 (144)
10 PLN03120 nucleic acid binding 95.9 0.04 8.6E-07 55.3 8.8 73 189-329 4-78 (260)
11 PLN03121 nucleic acid binding 95.7 0.054 1.2E-06 53.5 8.9 37 187-228 3-39 (243)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.5 0.063 1.4E-06 57.4 9.7 100 189-352 3-110 (352)
13 KOG0149 Predicted RNA-binding 95.4 0.035 7.5E-07 54.0 6.1 60 191-314 14-73 (247)
14 KOG0144 RNA-binding protein CU 95.4 0.076 1.6E-06 55.9 9.0 125 190-319 35-189 (510)
15 TIGR01628 PABP-1234 polyadenyl 95.4 0.086 1.9E-06 60.3 10.6 154 191-354 2-201 (562)
16 PF14259 RRM_6: RNA recognitio 95.2 0.057 1.2E-06 42.8 6.2 60 192-316 1-60 (70)
17 PF00076 RRM_1: RNA recognitio 95.2 0.062 1.3E-06 42.2 6.3 61 192-317 1-61 (70)
18 TIGR01648 hnRNP-R-Q heterogene 94.9 0.18 3.8E-06 57.1 11.0 39 188-231 57-95 (578)
19 KOG0122 Translation initiation 94.2 0.15 3.3E-06 49.9 7.3 68 188-319 188-255 (270)
20 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.0 0.2 4.3E-06 53.6 8.5 75 189-327 269-345 (352)
21 TIGR01659 sex-lethal sex-letha 93.8 0.2 4.4E-06 53.3 8.1 67 188-318 192-258 (346)
22 KOG0145 RNA-binding protein EL 92.7 1.6 3.5E-05 43.2 11.5 132 191-331 43-209 (360)
23 TIGR01628 PABP-1234 polyadenyl 92.5 0.36 7.7E-06 55.3 8.2 39 187-230 176-214 (562)
24 PF04059 RRM_2: RNA recognitio 92.5 0.59 1.3E-05 39.9 7.3 24 294-317 44-67 (97)
25 TIGR01648 hnRNP-R-Q heterogene 92.4 0.47 1E-05 53.8 8.6 73 189-331 233-307 (578)
26 KOG0125 Ataxin 2-binding prote 92.4 0.42 9.2E-06 48.8 7.4 89 189-343 96-196 (376)
27 smart00362 RRM_2 RNA recogniti 92.1 0.67 1.4E-05 35.7 7.0 24 294-317 38-61 (72)
28 KOG4211 Splicing factor hnRNP- 91.6 0.43 9.4E-06 51.4 6.7 38 186-229 7-44 (510)
29 KOG4206 Spliceosomal protein s 91.2 0.75 1.6E-05 44.8 7.3 44 294-337 51-96 (221)
30 TIGR01645 half-pint poly-U bin 89.9 1.2 2.7E-05 50.6 8.9 87 188-338 203-291 (612)
31 cd00590 RRM RRM (RNA recogniti 89.3 1.8 3.9E-05 33.4 7.2 24 295-318 40-63 (74)
32 KOG2514 Uncharacterized conser 89.2 2.7 5.8E-05 48.6 10.7 52 401-452 436-487 (861)
33 TIGR01622 SF-CC1 splicing fact 88.6 1.2 2.6E-05 49.5 7.6 37 188-229 88-124 (457)
34 KOG0127 Nucleolar protein fibr 88.4 1.1 2.4E-05 48.9 6.6 62 190-315 293-354 (678)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 86.9 4.1 8.9E-05 45.6 10.6 37 187-228 273-310 (481)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 86.0 3.6 7.9E-05 46.1 9.6 33 189-226 2-34 (481)
37 TIGR01642 U2AF_lg U2 snRNP aux 85.9 2.5 5.5E-05 47.6 8.4 76 189-328 295-372 (509)
38 TIGR01622 SF-CC1 splicing fact 84.5 3.5 7.5E-05 45.8 8.5 67 187-317 184-250 (457)
39 TIGR01645 half-pint poly-U bin 84.5 2.6 5.7E-05 48.0 7.4 66 188-317 106-171 (612)
40 KOG0117 Heterogeneous nuclear 83.4 2.3 4.9E-05 45.5 5.9 127 189-321 83-234 (506)
41 PF13893 RRM_5: RNA recognitio 82.6 1.4 3.1E-05 33.0 3.1 24 295-318 21-44 (56)
42 PF07810 TMC: TMC domain; Int 80.4 12 0.00025 32.9 8.3 54 528-586 47-105 (111)
43 KOG4212 RNA-binding protein hn 79.4 7.1 0.00015 41.7 7.7 38 292-329 83-122 (608)
44 KOG0109 RNA-binding protein LA 78.7 2.6 5.5E-05 42.6 4.1 113 192-316 5-133 (346)
45 KOG0107 Alternative splicing f 75.7 2.2 4.7E-05 40.0 2.5 34 294-327 46-81 (195)
46 COG0724 RNA-binding proteins ( 75.6 8.6 0.00019 38.4 7.3 77 189-329 115-193 (306)
47 smart00361 RRM_1 RNA recogniti 75.1 4 8.6E-05 32.3 3.7 25 294-318 36-60 (70)
48 KOG0113 U1 small nuclear ribon 68.3 16 0.00034 37.4 6.7 62 189-314 101-162 (335)
49 KOG0146 RNA-binding protein ET 63.1 13 0.00029 37.1 5.0 48 294-353 59-111 (371)
50 smart00360 RRM RNA recognition 61.7 11 0.00023 28.4 3.6 23 294-316 37-59 (71)
51 KOG0108 mRNA cleavage and poly 61.6 23 0.00051 38.8 7.2 80 186-329 14-96 (435)
52 KOG0117 Heterogeneous nuclear 61.1 13 0.00027 40.0 4.8 81 269-349 95-182 (506)
53 KOG0148 Apoptosis-promoting RN 58.4 10 0.00022 38.1 3.4 142 188-352 5-185 (321)
54 KOG0105 Alternative splicing f 55.5 21 0.00045 33.9 4.7 19 295-313 45-63 (241)
55 KOG0132 RNA polymerase II C-te 53.9 28 0.0006 40.2 6.2 26 294-319 456-481 (894)
56 PF07292 NID: Nmi/IFP 35 domai 52.9 3.2 6.9E-05 34.7 -0.9 31 186-216 49-80 (88)
57 KOG0131 Splicing factor 3b, su 52.2 26 0.00056 33.3 4.8 67 186-316 6-72 (203)
58 KOG0148 Apoptosis-promoting RN 51.9 43 0.00094 33.8 6.5 39 188-231 61-99 (321)
59 KOG0127 Nucleolar protein fibr 47.2 44 0.00096 37.0 6.3 26 190-218 6-31 (678)
60 KOG4207 Predicted splicing fac 47.0 43 0.00093 32.5 5.4 77 188-328 12-90 (256)
61 KOG0123 Polyadenylate-binding 45.7 66 0.0014 34.7 7.4 33 192-229 79-111 (369)
62 PF11608 Limkain-b1: Limkain b 42.1 40 0.00087 27.9 3.8 40 295-334 39-80 (90)
63 KOG4208 Nucleolar RNA-binding 41.0 27 0.00058 33.9 3.1 22 294-315 91-112 (214)
64 KOG1457 RNA binding protein (c 37.8 42 0.00091 32.9 3.9 22 295-316 77-98 (284)
65 KOG0145 RNA-binding protein EL 33.9 1.8E+02 0.0039 29.3 7.6 66 188-317 277-342 (360)
66 PF01102 Glycophorin_A: Glycop 31.7 39 0.00084 30.2 2.5 18 13-30 75-92 (122)
67 PF06570 DUF1129: Protein of u 31.6 3.6E+02 0.0077 26.3 9.6 20 627-646 183-202 (206)
68 PF15176 LRR19-TM: Leucine-ric 31.4 1.2E+02 0.0025 26.0 5.1 22 584-605 8-29 (102)
69 KOG1548 Transcription elongati 30.3 97 0.0021 32.5 5.3 45 274-318 286-337 (382)
70 PF06790 UPF0259: Uncharacteri 30.3 5.5E+02 0.012 26.0 10.7 81 433-513 71-154 (248)
71 PF14362 DUF4407: Domain of un 29.9 2.9E+02 0.0062 28.7 9.2 58 557-615 46-106 (301)
72 TIGR01642 U2AF_lg U2 snRNP aux 29.4 72 0.0016 35.8 4.9 25 295-319 464-488 (509)
73 PF02654 CobS: Cobalamin-5-pho 27.6 3.9E+02 0.0086 26.6 9.3 106 539-646 103-213 (235)
74 KOG0114 Predicted RNA-binding 27.0 55 0.0012 28.2 2.5 23 295-317 57-79 (124)
75 KOG4050 Glutamate transporter 26.5 3.6E+02 0.0079 25.2 7.7 42 327-368 33-75 (188)
76 PF09874 DUF2101: Predicted me 26.3 3.3E+02 0.0072 26.5 7.8 91 550-650 50-145 (206)
77 PF02439 Adeno_E3_CR2: Adenovi 23.6 1.9E+02 0.0042 20.1 4.1 28 4-31 6-33 (38)
78 PF11823 DUF3343: Protein of u 23.1 1.1E+02 0.0024 24.3 3.6 36 296-334 2-37 (73)
79 KOG0144 RNA-binding protein CU 22.9 1.3E+02 0.0027 32.7 4.7 25 294-318 75-99 (510)
80 PF14257 DUF4349: Domain of un 22.9 7.9E+02 0.017 24.8 10.9 26 263-288 160-185 (262)
81 PF02388 FemAB: FemAB family; 22.2 2.4E+02 0.0053 30.7 7.2 84 218-305 228-316 (406)
82 KOG0110 RNA-binding protein (R 22.1 1.5E+02 0.0033 34.1 5.4 59 294-352 559-634 (725)
83 PF05393 Hum_adeno_E3A: Human 21.8 75 0.0016 26.3 2.2 38 9-46 36-75 (94)
84 KOG1365 RNA-binding protein Fu 21.7 79 0.0017 33.5 2.9 24 292-315 203-226 (508)
85 PF14605 Nup35_RRM_2: Nup53/35 21.0 1.1E+02 0.0023 22.8 2.8 31 190-226 2-32 (53)
86 COG5438 Predicted multitransme 20.5 8.8E+02 0.019 26.1 10.3 60 399-458 204-263 (385)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=7.9e-116 Score=950.66 Aligned_cols=640 Identities=28% Similarity=0.464 Sum_probs=585.1
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeeccccccCCCC-CccccCccccccCcccchhHhhcCCHHHHHHhc
Q 006191 2 LVSALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSS-NRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESS 80 (657)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~-~~~~~~~~~~~~~~~~Wi~~~~~~~d~~i~~~~ 80 (657)
+.+++.|++.+++.++++++++|++||+| .+++|+||+..++.+ ++|. +.+.|+|||+.++++++|+.+++++
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~~~~P~----~~~ss~~gWl~~L~~i~d~~~l~~a 93 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQNECLPE----PNPSSYWGWLEPLVKIPDEFLLQYA 93 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCCcccCC----CCccchHHHHHHHHhCCHHHHHHHc
Confidence 47899999999999999999999999976 799999999988765 2222 2478999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCccccccCCCCCCCCccccccccCCCCchHHHHHHHHHHHHHH
Q 006191 81 GLDAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIF 160 (657)
Q Consensus 81 GlDa~~flrflk~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~l~~~Ti~Ni~~~s~~lw~h~i~~~~~~~~ 160 (657)
|+|||+||||+|||++++++.|+++++||+|||++.++..+ +.....++++++|++|+++ ++++|+|++.+|++.++
T Consensus 94 GlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~--gn~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~ 170 (827)
T COG5594 94 GLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATN--GNSDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGY 170 (827)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeeccccccc--CCccchhhhhHhhhhcccC-CCceeeeeehhHHHHHH
Confidence 99999999999999999999999999999999987754432 1112468999999999986 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC---------CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc
Q 006191 161 VCYLLYSEYKYICVKRMDYFYSSKP---------QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (657)
Q Consensus 161 ~~~~l~~e~~~~~~~R~~~l~~~~~---------~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~ 231 (657)
++|.+++|++.+..+||++++++.+ +.++|||+++++|.+..+ .+++.++|++...+++.+..+|+|.+
T Consensus 171 vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i~~~~l~~~~~ 248 (827)
T COG5594 171 VLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEIDSDVLCRDLG 248 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeeeccchhhhhhH
Confidence 9999999999999999999999852 348999999999985443 24589999999888888889999999
Q ss_pred hHHHHHHHHHHHHHHHhhh---------c-------cC--------------------CCCCC--C--------CCccCC
Q 006191 232 NLCRLMDYAKKLYGRLIHL---------Q-------SD--------------------SNQEK--N--------QQRKVD 265 (657)
Q Consensus 232 ~l~~l~~~~~~~~~~le~~---------~-------~~--------------------~~~rP--k--------~g~kvd 265 (657)
.++++.++|++..+|+|.. + ++ ..+|| | .|||||
T Consensus 249 ~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkVd 328 (827)
T COG5594 249 TLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKVD 328 (827)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhccceec
Confidence 9999999999998888721 0 00 02377 1 589999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCCCce-eccCCCCCCcccCCCCCchH
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPTDWL-LEQAPEPNDVYWPFFSASFM 344 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~ 344 (657)
+|||+++|+.+++++|++.|+..++.. .+++|||||+|+..||+|+|.+..+++.... ++.||+|+||+|+|+..+++
T Consensus 329 aI~y~s~~l~~l~~~i~~~r~~~~~~t-~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~ 407 (827)
T COG5594 329 AIDYYSAKLTKLDAEIENARKSLYENT-PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRK 407 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccC-ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHH
Confidence 999999999999999999999876643 3779999999999999999999888886655 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHhHhhhhhhhhh-hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006191 345 RRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILT-IKFVSQVVTGYLPNLILLVFLKIVPPVMEFL 423 (657)
Q Consensus 345 ~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~~~l~~~~~~l~~~~~-~~~~~~~i~~~lpslil~i~n~llp~i~~~l 423 (657)
+|..|++.++++.++++++|++|||+++.++|++++.+.+||++.+.+ .|+++++++|+||++++.+++.++|++++++
T Consensus 408 ~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~L 487 (827)
T COG5594 408 ERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL 487 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999955 5699999999999999999999999999999
Q ss_pred HHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhchhhHHHHHHHhc-CCCChHHHHhhhCCcchHHHHHHHHHHhhhhhh
Q 006191 424 SSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGIS 502 (657)
Q Consensus 424 s~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~-~~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~ 502 (657)
+.+||..|+|+.|..++.|+|.|+++|.|+|.++++++.+.+.+.. +|.+++.++++++|++|+||++|+++||+++++
T Consensus 488 s~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~ 567 (827)
T COG5594 488 SYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFP 567 (827)
T ss_pred HHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999988776666666 899999999999999999999999999999999
Q ss_pred HHhHhhHHHHHHHhhcccCCCCCCC-----CCCCCcCcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006191 503 SELFQIFPLICSLISKPFTKSKDDD-----FEVPAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQ 577 (657)
Q Consensus 503 ~~ll~~~~l~~~~~~~~~~~~T~r~-----~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~ 577 (657)
++|+|+++|+.+.+..++.++|||+ ..++.|+||..||+.+.+++|+++||+++|+|+.||+++|++.|+++||+
T Consensus 568 ~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~ 647 (827)
T COG5594 568 GTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYN 647 (827)
T ss_pred hHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888999996 57899999999999999999999999999999999999999999999999
Q ss_pred hceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccceehhhHHHHHHHHHHHHhcccccccccCC
Q 006191 578 FINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFLPNFIAYP 653 (657)
Q Consensus 578 llyvy~~~~es~G~~~~~~~~~~~~~l~~~q~~~~g~~~~~~~~~~~~~~~~l~~~t~~f~~~~~~~f~~~~~~~p 653 (657)
++|+++.++||||++||+|++|+++|+++||+||+|+|++.++|+.+++++|++.+|++||++|+++|.|+..++-
T Consensus 648 l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~glf~~~k~~~ls~~~~p~~~~Tvi~~~~~~~~f~pl~~~ik 723 (827)
T COG5594 648 LIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGLFSLAKGWGLSVLLFPLIVFTVIFHYYFKKMFDPLSKYIK 723 (827)
T ss_pred hhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCcceeEeehHHHHHHHHHHHHHHHHhhccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865554
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=5.2e-113 Score=963.37 Aligned_cols=647 Identities=42% Similarity=0.746 Sum_probs=595.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeeccccccCCCCCccccCcc-ccccCc-ccchhHhhcCCHHHHHHhcCC
Q 006191 5 ALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKGSSNRRRRFNL-EMLIPS-AGWVSRAWKHSEEDLLESSGL 82 (657)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~~~~~~~~~-~~~~~~-~~Wi~~~~~~~d~~i~~~~Gl 82 (657)
++..+-.++...+..++.+|.+++.++++.++|.|++...+.+..+..... ..+++. ++|+.++++.+|+|++++||+
T Consensus 6 ~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~Gl 85 (728)
T KOG1134|consen 6 SIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHAGL 85 (728)
T ss_pred cccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHhcc
Confidence 344455566666777778888888889999999999988776643322111 125566 999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCccccccCCCCCCCCccccccccCCCCchHHHHHHHHHHHHHHHH
Q 006191 83 DAVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVC 162 (657)
Q Consensus 83 Da~~flrflk~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~l~~~Ti~Ni~~~s~~lw~h~i~~~~~~~~~~ 162 (657)
||++||||+++++++|+++++++++|++|||+++++.++. ..+++|++|++|++.+++++|+|++++|+++++++
T Consensus 86 Da~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~-----~~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~~~ 160 (728)
T KOG1134|consen 86 DAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELG-----NEDSLDKLSISNVQPGSSLLWAHVFFTYLFTFFTL 160 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCccccc-----ccchhhhhhheeccCCCCCEEEEeehhHHHHHHHH
Confidence 9999999999999999999999999999999999988642 22389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHH
Q 006191 163 YLLYSEYKYICVKRMDYFYSSKPQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKK 242 (657)
Q Consensus 163 ~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~ 242 (657)
+++++|++++..+|+++++++.+.+++.|++++++|...+.+..+..+++|+..+|+++.++++++|..++.++.+++++
T Consensus 161 ~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~k 240 (728)
T KOG1134|consen 161 FILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSKLKK 240 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976666667888889998899999999999999999999999999
Q ss_pred HH-HHHhhhcc----CCCCCC--C------CCccCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHH
Q 006191 243 LY-GRLIHLQS----DSNQEK--N------QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAA 309 (657)
Q Consensus 243 ~~-~~le~~~~----~~~~rP--k------~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~ 309 (657)
+. +++.+.+. ...+|| | +|+||||||||++|+++++++|+++|++..++ +..+.|||||+|+.+|+
T Consensus 241 ~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~-~~~~~aFVtf~sr~~A~ 319 (728)
T KOG1134|consen 241 LRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEE-KPLPAAFVTFKSRYGAA 319 (728)
T ss_pred HhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEEEeeHHHH
Confidence 84 44333221 112688 3 68999999999999999999999999998776 56899999999999999
Q ss_pred HHHHhcccCCCCCceeccCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHhHhhhhhh
Q 006191 310 IAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKS 389 (657)
Q Consensus 310 ~~~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~~~l~~~~~~l~~ 389 (657)
.|+|..++.++.+|.++.||||+||.|+|+..+..+|+.|+++++++++++++||++|+++|++++|++.|++.+||++.
T Consensus 320 ~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~~~~Pflk~ 399 (728)
T KOG1134|consen 320 VAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLSKVFPFLKP 399 (728)
T ss_pred HHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhchhhHHHHHHHhc
Q 006191 390 ILTIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL 469 (657)
Q Consensus 390 ~~~~~~~~~~i~~~lpslil~i~n~llp~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~ 469 (657)
+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|+|+++|+|++++++|++++++..+.
T Consensus 400 i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~l 479 (728)
T KOG1134|consen 400 ILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSIL 479 (728)
T ss_pred hhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred -CCCChHHHHhhhCCcchHHHHHHHHHHhhhhhhHHhHhhHHHHHHHhhcccCCCCCCC----CCC-CCcCcccchhhHH
Q 006191 470 -DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDD----FEV-PAIHYHSELPRIL 543 (657)
Q Consensus 470 -~~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~~l~~~~~~~~~~~~T~r~----~~~-~~f~~~~~y~~~l 543 (657)
+|.+++..+|.++|++++||++|++++|+.|.+++++|+++++++.+++.+..+|||+ +++ +.+++|..||..+
T Consensus 480 ~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~g~~yP~~~ 559 (728)
T KOG1134|consen 480 STPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYFGTIYPRIL 559 (728)
T ss_pred cCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccchhhhccHHH
Confidence 5799999999999999999999999999999999999999999999998888899986 555 7899999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 006191 544 LFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAIAVGIFTIKKLSTA 623 (657)
Q Consensus 544 ~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~~~q~~~~g~~~~~~~~~~ 623 (657)
++++|+++||+++|+|+|||++||++.|+|||||++|||.++|||||++||.+++++++|+++||++|+|+|++|+++..
T Consensus 560 ~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~yes~g~~wp~ih~~ii~~l~l~ql~l~gl~~~k~~~~~ 639 (728)
T KOG1134|consen 560 LIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKYESGGRFWPDIHRRIIFGLILFQLILFGLFSLKKGAVA 639 (728)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccccccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhhHHHHHHHHHHHHhcccccccccCCCCCC
Q 006191 624 STLIFPLPVLTLLFNEYCRKRFLPNFIAYPAEVH 657 (657)
Q Consensus 624 ~~~~~~l~~~t~~f~~~~~~~f~~~~~~~pl~~~ 657 (657)
+.+++|++++|+.+|.+|..+|.|.+.++|++++
T Consensus 640 s~~~~~l~~lTi~~~~~c~~rf~p~f~~~~~~~~ 673 (728)
T KOG1134|consen 640 SVLLFPLIVLTILFHIYCKGRFLPLFIAYPIEEA 673 (728)
T ss_pred chHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 9999999999999999999999999999999863
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=2.2e-65 Score=541.39 Aligned_cols=318 Identities=34% Similarity=0.706 Sum_probs=306.7
Q ss_pred EEEEecCHHHHHHHHHhcccCCCCCceeccCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 006191 298 AFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDVYWPFFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNL 377 (657)
Q Consensus 298 AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~ 377 (657)
|||||+++++|+.|+|...+++|++|++++||||+||+|||++.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHhhhhhhhh-hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHh
Q 006191 378 NQLEIWFPFLKSIL-TIKFVSQVVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATV 456 (657)
Q Consensus 378 ~~l~~~~~~l~~~~-~~~~~~~~i~~~lpslil~i~n~llp~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~ 456 (657)
+++.+..|++++.. +++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 45577899999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhc-CCCChHHHHhhhCCcchHHHHHHHHHHhhhhhhHHhHhhHHHHHHHhhcccCCCCCCC----C-CC
Q 006191 457 FSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIFPLICSLISKPFTKSKDDD----F-EV 530 (657)
Q Consensus 457 l~~~~~~~~~~~~-~~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~~l~~~~~~~~~~~~T~r~----~-~~ 530 (657)
+++++++.+.++. +|+++.+.+|+++|++++||++|++++++.+.+.+|+|+++++++.+++++..+|||| . ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 9999999888877 7999999999999999999999999999999999999999999999988776799997 4 89
Q ss_pred CCcCcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHHH
Q 006191 531 PAIHYHSELPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHAI 610 (657)
Q Consensus 531 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~~~q~~ 610 (657)
++|+||..||..+++++++++||+++|+++|+|++||++.|++||||++|||++++||||++||.+++++++|++++|++
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~~l~i~q~~ 320 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLFGLVIFQFT 320 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 006191 611 AVGIF 615 (657)
Q Consensus 611 ~~g~~ 615 (657)
|+|+|
T Consensus 321 ~~g~f 325 (325)
T PF02714_consen 321 MIGLF 325 (325)
T ss_pred HHHhC
Confidence 99985
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=3.4e-34 Score=269.53 Aligned_cols=156 Identities=36% Similarity=0.599 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCceeeccccccCC-CCCccccCccccccCcccchhHhhcCCHHHHHHhcCCc
Q 006191 5 ALLTSVGINSGLCVLFFTLYSILRKQPSNYEVYVPRLLAKG-SSNRRRRFNLEMLIPSAGWVSRAWKHSEEDLLESSGLD 83 (657)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~-~~~~~~~~~~~~~~~~~~Wi~~~~~~~d~~i~~~~GlD 83 (657)
++++++++|++++++++++|+++|+| ++++|+||.+.++ .+++++ .++++|+|+|++++++++|+|++++||+|
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~---~~~~~g~f~Wi~~~~~~~d~~i~~~~GlD 75 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPP---PLPSRGFFGWIKPVFKISDDEILRHCGLD 75 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCC---CCCCCCchHHHHHHHcCCHHHHHHHcCCC
Confidence 58899999999999999999999976 8999999999864 222222 22357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCccccccCCCCCCCCccccccccCCCCchHHHHHHHHHHHHHHHHH
Q 006191 84 AVVFMRVITFSLKVFLFAGIIGIFVILPVNAGGTEIYEIDFADLPNNSLDVFTISNVNRGSHRLWVHFGAVYLVTIFVCY 163 (657)
Q Consensus 84 a~~flrflk~~~~~f~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~l~~~Ti~Ni~~~s~~lw~h~i~~~~~~~~~~~ 163 (657)
|++|+||+|+++++|+++++++++||+|+|++|++.++. ....+++|++|++|++++++++|+|++++|++++++++
T Consensus 76 a~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~---~~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~ 152 (157)
T PF13967_consen 76 AYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGD---SDNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLY 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCccc---cccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887531 11227999999999999999999999999999999999
Q ss_pred HHHHH
Q 006191 164 LLYSE 168 (657)
Q Consensus 164 ~l~~e 168 (657)
++++|
T Consensus 153 ~l~~E 157 (157)
T PF13967_consen 153 LLWRE 157 (157)
T ss_pred hheeC
Confidence 99876
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.06 E-value=9e-08 Score=106.07 Aligned_cols=257 Identities=14% Similarity=0.216 Sum_probs=157.6
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHhHhhhhhhhhh---hhhHHHHHHhhHHHHHHHHHHH
Q 006191 338 FFSASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILT---IKFVSQVVTGYLPNLILLVFLK 414 (657)
Q Consensus 338 NL~~~~~~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~~~l~~~~~~l~~~~~---~~~~~~~i~~~lpslil~i~n~ 414 (657)
+...+.++|..|...+..+++++++.. ++++.++..++. ++....+ .....+++.+.+-++++.++|.
T Consensus 109 ~~~~p~~~r~~r~~~s~~ivl~~i~i~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vl~~v~i~il~~ 179 (452)
T PF04547_consen 109 EPYYPPWKRILRYLVSVPIVLLFILIV---IGIVIGVFYLRI------YLTEIYSGPGKQFLASLIPTVLNAVVILILNF 179 (452)
T ss_pred ccCCcHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHhcccchhHHHHHHHHHHHHHHHHhhhh
Confidence 556777888888866555444333221 122222211111 1111111 1123344455555566667788
Q ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhchhhHHHHHHHhc-CCCChHHHHhhhCCcchHHHHHHH
Q 006191 415 IVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVL-DPKNIPSRLGVAVPAQASFFIAYV 493 (657)
Q Consensus 415 llp~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~-~~~~i~~~l~~~lp~~s~ffi~yi 493 (657)
+...+..+++++|.|+|.|+.|.+...|.|+|+++|.+.-.... +.+......- ++ +.. +-+..+...+
T Consensus 180 iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~--------~L~~ql~~~~ 249 (452)
T PF04547_consen 180 IYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLS--------RLRIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHH--------HHHHHHHHHH
Confidence 88889999999999999999999999999999999998654442 2222211100 22 221 1123334444
Q ss_pred HHHhhhhhhHHhHhhHHHHHHHhhcc-c---CCCCC----C--------------CCCCCCcCcc---cchhhHHHHHHH
Q 006191 494 VTSGWTGISSELFQIFPLICSLISKP-F---TKSKD----D--------------DFEVPAIHYH---SELPRILLFGLL 548 (657)
Q Consensus 494 i~~~~~~~~~~ll~~~~l~~~~~~~~-~---~~~T~----r--------------~~~~~~f~~~---~~y~~~l~~~~i 548 (657)
+++-+.....+.. .|.+.+..+++ . ..++. + |.+.++++-. .+|..+..-+..
T Consensus 250 ~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 4444444444433 34444444322 1 11111 0 1455666643 789999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC---CCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 006191 549 GITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY---ETAGKFWPIVHNSMIFSLVLMHAIAVGIF 615 (657)
Q Consensus 549 ~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~---es~G~~~~~~~~~~~~~l~~~q~~~~g~~ 615 (657)
..+|+++.|+...+|++--++-.-+|++.+++.+++|. .++=-.|-.++..+...-++....++++.
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~tN~~li~~~ 397 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVITNAALIAFT 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998652 22223598888887766666665555554
No 6
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=97.98 E-value=8.5e-06 Score=68.22 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=41.1
Q ss_pred EEcccchHHHHHHHHHHHHHHHhhhc-----cCC----------C--------CCC----C----CC-ccCChHHHHHHH
Q 006191 226 VIHQTSNLCRLMDYAKKLYGRLIHLQ-----SDS----------N--------QEK----N----QQ-RKVDLVDHYGKR 273 (657)
Q Consensus 226 ~~~~~~~l~~l~~~~~~~~~~le~~~-----~~~----------~--------~rP----k----~g-~kvd~i~~~~~~ 273 (657)
+++|.++|++|+++|+++.++||+.. ... . .|| + || +|||+||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999998421 100 0 122 1 56 999999999999
Q ss_pred HHHHH
Q 006191 274 LENIE 278 (657)
Q Consensus 274 l~~l~ 278 (657)
+++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.0025 Score=69.95 Aligned_cols=261 Identities=17% Similarity=0.248 Sum_probs=145.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHhHhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHH--
Q 006191 340 SASFMRRWISKIVVVVACILLTILFLIPVLVVQGLTNLNQLEIWFPFLKSILTIKFVSQVVTGYLPNLILLVFLKIVP-- 417 (657)
Q Consensus 340 ~~~~~~r~~R~~~~~~~~~~l~~~~~iPv~~i~~l~~~~~l~~~~~~l~~~~~~~~~~~~i~~~lpslil~i~n~llp-- 417 (657)
..+.|.|.+|+.++.+-++++++....++.+...-.+. +.....+.| ..+ +.+++|+++..++..++.
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~--------~~~s~~~~~-~~s-ils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEV--------WVLSDYGGP-LIS-ILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHcCCc-hHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45678889999988887777776666666554432111 222222233 222 345788887776665554
Q ss_pred --HHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhchhhHHHHHHHhcCCCChHHHHhhh----------CCcc
Q 006191 418 --PVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFSGSVLYQLNIVLDPKNIPSRLGVA----------VPAQ 485 (657)
Q Consensus 418 --~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~~~~~i~~~l~~~----------lp~~ 485 (657)
.+-.++.++|.|.|+|..+++...|.+.|+|+|.++--...+-...... ..-..++.. .+..
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~------~Lk~~l~~~li~sQ~l~~~~e~~ 403 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME------LLKQQLATLLITSQSLLNLMEIA 403 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456667889999999999999999999999999864333221111111 011111111 1111
Q ss_pred hHHH-HHHH--------HHHhhhhhhHHhHhhHHHHHHHhhcccCCCCCCC-------------CCCCCcCcc---cchh
Q 006191 486 ASFF-IAYV--------VTSGWTGISSELFQIFPLICSLISKPFTKSKDDD-------------FEVPAIHYH---SELP 540 (657)
Q Consensus 486 s~ff-i~yi--------i~~~~~~~~~~ll~~~~l~~~~~~~~~~~~T~r~-------------~~~~~f~~~---~~y~ 540 (657)
-.+| .++- .++.+ +.++...... ...-++-+.++| |+ .+..--.|. ..|=
T Consensus 404 ~p~f~~~~~r~~~~~~f~t~~~---ae~~~s~~~~-i~~~~~~~~~~s-~~~~a~~~~~~~qa~~E~~~~~ydgtf~Dyl 478 (647)
T KOG2513|consen 404 LPYFKIRTKRYENYIRFRTKSF---AEELASAQAK-IDGESPGFPAPS-REPEAQLFPSLKQAELESGLAEYDGTFDDYL 478 (647)
T ss_pred chHHHHhhhhhhhhhhHHHHHH---HHhhccchhh-hcccccCCCCcc-cccchhhcccchhhhhcchhhhhcchhHHHH
Confidence 1111 1110 00000 0000000000 000000011111 11 112112222 3455
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC----CCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 006191 541 RILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY----ETAGKFWPIVHNSMIFSLVLMHAIAVGIFT 616 (657)
Q Consensus 541 ~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~----es~G~~~~~~~~~~~~~l~~~q~~~~g~~~ 616 (657)
.+.+-|-...+||++.|+-..+|++--.+.+=+|-+.++.+.++|. ++=|. |..++..+-+.-++-...++|+..
T Consensus 479 el~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~-Wq~~l~~lSvls~vtncaLi~~~~ 557 (647)
T KOG2513|consen 479 ELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGA-WQNALELLSVLSCVTNCALIGMYP 557 (647)
T ss_pred HHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHH-HHHHHHHHHHHHHHHhHHHHhccc
Confidence 6788888899999999999999999999999999999999998763 55565 888877765554444444455443
Q ss_pred -hccccc
Q 006191 617 -IKKLST 622 (657)
Q Consensus 617 -~~~~~~ 622 (657)
.++.|.
T Consensus 558 ~~~~~~~ 564 (647)
T KOG2513|consen 558 QVNKLWP 564 (647)
T ss_pred cccccCc
Confidence 333443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.52 E-value=0.02 Score=60.93 Aligned_cols=103 Identities=12% Similarity=0.170 Sum_probs=70.6
Q ss_pred CCCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 185 PQPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 185 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
...+..+|.|.|||.+.++ ++|+++|++. +.|.++.++.|..
T Consensus 103 ~~~~~~~LfVgnLp~~~te---~~L~~lF~~~--G~V~~v~i~~d~~--------------------------------- 144 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTD---RELYALFRTI--GPINTCRIMRDYK--------------------------------- 144 (346)
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCC---------------------------------
Confidence 3456789999999998764 7899999987 5577777765310
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC------CCCCccc
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP------EPNDVYW 336 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP------~P~DIiW 336 (657)
..+..++|||+|.++++|..|.+.+.... ...++++.|. ....|.-
T Consensus 145 --------------------------tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV 198 (346)
T TIGR01659 145 --------------------------TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYV 198 (346)
T ss_pred --------------------------CCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEE
Confidence 01135899999999999999998765432 3445555442 2233667
Q ss_pred CCCCCchHHHHHHHH
Q 006191 337 PFFSASFMRRWISKI 351 (657)
Q Consensus 337 ~NL~~~~~~r~~R~~ 351 (657)
.||..+..+..+|.+
T Consensus 199 ~nLp~~vtee~L~~~ 213 (346)
T TIGR01659 199 TNLPRTITDDQLDTI 213 (346)
T ss_pred eCCCCcccHHHHHHH
Confidence 777666555555544
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.06 E-value=0.034 Score=51.37 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=55.4
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
...+|.|.|||.+.++ ++|+++|+++ +.|.++.++.|.
T Consensus 33 ~~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~d~------------------------------------- 70 (144)
T PLN03134 33 MSTKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIVDR------------------------------------- 70 (144)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEecC-------------------------------------
Confidence 3568999999997764 7899999987 677777775541
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
...+..+.|||+|+++++|+.|.+.+... +...++|+.|
T Consensus 71 ----------------------~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 71 ----------------------ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred ----------------------CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 00123689999999999999999876543 2334555544
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.85 E-value=0.04 Score=55.30 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=53.8
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.+||.|.|||.+.++ +.|++||+.. |.|.++.+..|-
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I~~d~-------------------------------------- 40 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEMQSEN-------------------------------------- 40 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC--------------------------------------
Confidence 479999999997664 7899999987 778777774420
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+.|||||+++++|..|.. +... ....++|.+|+
T Consensus 41 ------------------------~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 41 ------------------------ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred ------------------------CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 015799999999999999985 4332 24555666654
No 11
>PLN03121 nucleic acid binding protein; Provisional
Probab=95.71 E-value=0.054 Score=53.50 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=30.1
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEc
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 228 (657)
+.-|||.|+||+.+.++ ++|++||+.. |.|.++.+.+
T Consensus 3 ~~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~~ 39 (243)
T PLN03121 3 PGGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEIIR 39 (243)
T ss_pred CCceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEec
Confidence 34599999999997664 8899999987 7788887754
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.53 E-value=0.063 Score=57.40 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=71.7
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
..+|+|.|||.+.++ ++|+++|+++ |.|.++.+++|-.
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~~------------------------------------- 40 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDKV------------------------------------- 40 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcCC-------------------------------------
Confidence 469999999997764 7899999997 6788888876510
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC------CCCCcccCCCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP------EPNDVYWPFFS 340 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP------~P~DIiW~NL~ 340 (657)
..++.|+|||+|.+.++|..|.+.+.... ...+.++.|- +...+.-.||.
T Consensus 41 ----------------------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~ 98 (352)
T TIGR01661 41 ----------------------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLP 98 (352)
T ss_pred ----------------------CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCcc
Confidence 01236899999999999999998765432 2345554442 23357778887
Q ss_pred CchHHHHHHHHH
Q 006191 341 ASFMRRWISKIV 352 (657)
Q Consensus 341 ~~~~~r~~R~~~ 352 (657)
.+..+..++.++
T Consensus 99 ~~~~~~~l~~~f 110 (352)
T TIGR01661 99 KTMTQHELESIF 110 (352)
T ss_pred ccCCHHHHHHHH
Confidence 776666666654
No 13
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.38 E-value=0.035 Score=54.05 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=47.5
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHH
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHY 270 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~ 270 (657)
-|.|-|+|.++. +|.|++||+++ |++++.+++.|- .
T Consensus 14 KifVggL~w~T~---~~~l~~yFeqf--GeI~eavvitd~-----------------------~---------------- 49 (247)
T KOG0149|consen 14 KIFVGGLAWETH---KETLRRYFEQF--GEIVEAVVITDK-----------------------N---------------- 49 (247)
T ss_pred EEEEcCcccccc---hHHHHHHHHHh--CceEEEEEEecc-----------------------C----------------
Confidence 489999999776 48899999998 777777776641 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 271 GKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 271 ~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
..++.|++||||++.++|..||+.
T Consensus 50 --------------------t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 50 --------------------TGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred --------------------CccccceeeEEeecHHHHHHHhcC
Confidence 012369999999999999999985
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.36 E-value=0.076 Score=55.90 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=66.8
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHH---------HHHHHHHHHHHHHhhhccCC-CCCC-
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLC---------RLMDYAKKLYGRLIHLQSDS-NQEK- 258 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~---------~l~~~~~~~~~~le~~~~~~-~~rP- 258 (657)
--..|-.||+.-.| ++++++|+++ |.|.+|.+.+|-..=. .-.++.+++.+.|...+.-+ ..-|
T Consensus 35 vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 35 VKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhheeccCCccccH---HHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34678899986543 6789999998 7889999988754211 11223333444332211101 1111
Q ss_pred --C--CCccCCh---HH---------HHHHHHHHHHHH---HHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC
Q 006191 259 --N--QQRKVDL---VD---------HYGKRLENIEEN---SRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 259 --k--~g~kvd~---i~---------~~~~~l~~l~~~---I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
| -+++... -+ .-+++++++-.+ ||+.+--.+.+..+.|+|||+|.+.+.|..|...++...
T Consensus 110 qvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 110 QVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred eecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 1 1111111 00 012344444333 222222222233458999999999999999998876543
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=95.35 E-value=0.086 Score=60.33 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=84.0
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHH------HHHHHHHHHHHhhhccC-----C-----
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRL------MDYAKKLYGRLIHLQSD-----S----- 254 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l------~~~~~~~~~~le~~~~~-----~----- 254 (657)
||.|.|||.+.++ +.|+++|+++ |.|.+|.+++|...=..+ ....+.+++.++.++.+ .
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 7999999997764 7899999988 678999999875411000 12233333334322211 0
Q ss_pred -CCCC---C----------CCccCChHHHHHHHHHHHHHH---HHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 255 -NQEK---N----------QQRKVDLVDHYGKRLENIEEN---SRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 255 -~~rP---k----------~g~kvd~i~~~~~~l~~l~~~---I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
.+.| + ..+.+|. ++++++-++ |...+-....+.+..|.|||.|+++++|..|.+.+..
T Consensus 77 s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred ccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 1112 0 0112221 222222221 1111111111233478999999999999999987643
Q ss_pred CC--CCCceec-----------cCCCCCCcccCCCCCchHHHHHHHHHHH
Q 006191 318 TN--PTDWLLE-----------QAPEPNDVYWPFFSASFMRRWISKIVVV 354 (657)
Q Consensus 318 ~~--~~~~~v~-----------~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 354 (657)
.. ...+.+. ..+..+.+.-.|+..+..+..++.++..
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~ 201 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK 201 (562)
T ss_pred cEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh
Confidence 21 1112111 2234455888899888777777765543
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.22 E-value=0.057 Score=42.78 Aligned_cols=60 Identities=25% Similarity=0.365 Sum_probs=44.3
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHHH
Q 006191 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYG 271 (657)
Q Consensus 192 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~~ 271 (657)
|+|+|||.+.+ .++|.++|+.. +.|.++.+.++-
T Consensus 1 v~i~nlp~~~~---~~~l~~~f~~~--g~v~~v~~~~~~----------------------------------------- 34 (70)
T PF14259_consen 1 VYISNLPPSTT---EEDLRNFFSRF--GPVEKVRLIKNK----------------------------------------- 34 (70)
T ss_dssp EEEESSTTT-----HHHHHHHCTTS--SBEEEEEEEEST-----------------------------------------
T ss_pred CEEeCCCCCCC---HHHHHHHHHhc--CCcceEEEEeee-----------------------------------------
Confidence 68999999765 47899999887 456676664320
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc
Q 006191 272 KRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ 316 (657)
Q Consensus 272 ~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~ 316 (657)
. ....+.|||+|.++++|..|.+..+
T Consensus 35 ------------------~-~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 35 ------------------D-GQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp ------------------T-SSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ------------------c-cccCCEEEEEeCCHHHHHHHHHHCC
Confidence 0 1237899999999999999999764
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=95.19 E-value=0.062 Score=42.20 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=45.7
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHHH
Q 006191 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYG 271 (657)
Q Consensus 192 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~~ 271 (657)
|.|.|||.+.++ ++|+++|+++ |.+..+.+..+.
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~--g~i~~~~~~~~~----------------------------------------- 34 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQF--GKIESIKVMRNS----------------------------------------- 34 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTT--STEEEEEEEEET-----------------------------------------
T ss_pred cEEcCCCCcCCH---HHHHHHHHHh--hhcccccccccc-----------------------------------------
Confidence 679999997764 7899999986 556666554420
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 272 KRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 272 ~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
..+..+.|||+|++.++|..|.+.++.
T Consensus 35 -------------------~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 35 -------------------SGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp -------------------TSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred -------------------cccccceEEEEEcCHHHHHHHHHHcCC
Confidence 012368999999999999999987654
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.91 E-value=0.18 Score=57.07 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=32.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~ 231 (657)
...+|.|.|||.+.++ ++|.+.|++. +.|.++.+.+|..
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCC
Confidence 4579999999998764 7899999987 6788888888743
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=94.25 E-value=0.15 Score=49.93 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=51.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..-||.|+|+|.+.++ +.|++.|..+ |.+.++.+++|-
T Consensus 188 D~~tvRvtNLsed~~E---~dL~eLf~~f--g~i~rvylardK------------------------------------- 225 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMRE---DDLEELFRPF--GPITRVYLARDK------------------------------------- 225 (270)
T ss_pred ccceeEEecCccccCh---hHHHHHhhcc--CccceeEEEEcc-------------------------------------
Confidence 3469999999998775 6678887766 567788887751
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
+...+.|-|||||.++++|+.|...+....
T Consensus 226 ----------------------~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 226 ----------------------ETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ----------------------ccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 012246999999999999999999876554
No 20
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.97 E-value=0.2 Score=53.57 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=55.0
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.++|.|.|||.+.++ +.|+++|+++ |.|.++.+++|..
T Consensus 269 ~~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d~~------------------------------------- 306 (352)
T TIGR01661 269 GYCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRDLT------------------------------------- 306 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEcCC-------------------------------------
Confidence 357999999987664 7899999987 6788888776410
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceecc
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQ 327 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~ 327 (657)
.+.+.|.|||+|++.++|..|.+.++... ...++|..
T Consensus 307 ----------------------t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 307 ----------------------TNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred ----------------------CCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 01236999999999999999999876543 23444443
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=93.82 E-value=0.2 Score=53.30 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=50.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
.+.+|.|.|||.+.++ ++|+++|+++ +.|.++.+.+|.
T Consensus 192 ~~~~lfV~nLp~~vte---e~L~~~F~~f--G~V~~v~i~~d~------------------------------------- 229 (346)
T TIGR01659 192 KDTNLYVTNLPRTITD---DQLDTIFGKY--GQIVQKNILRDK------------------------------------- 229 (346)
T ss_pred ccceeEEeCCCCcccH---HHHHHHHHhc--CCEEEEEEeecC-------------------------------------
Confidence 4678999999997664 7899999887 566666664431
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
...++.+.|||+|++.++|..|.+.+...
T Consensus 230 ----------------------~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 230 ----------------------LTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ----------------------CCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 01123589999999999999999987654
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=92.71 E-value=1.6 Score=43.16 Aligned_cols=132 Identities=19% Similarity=0.189 Sum_probs=78.5
Q ss_pred EEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHH---------HHHHHHHHHHHhh--hccCC----C
Q 006191 191 TVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRL---------MDYAKKLYGRLIH--LQSDS----N 255 (657)
Q Consensus 191 TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l---------~~~~~~~~~~le~--~~~~~----~ 255 (657)
-+.|.-+|.+..+ ++++..|... |+++++.+++|--.=+.| -++.+++...|.. ++.|. .
T Consensus 43 NLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred eeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4667888987664 7899999877 788999999885432222 1344555555653 33332 2
Q ss_pred CCC-----C------CC-ccCChHHHHHHHHHHHHHHHHHHH-hhhhhc---CCCCcEEEEEecCHHHHHHHHHhcccCC
Q 006191 256 QEK-----N------QQ-RKVDLVDHYGKRLENIEENSRLER-SEVSMA---RHELQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 256 ~rP-----k------~g-~kvd~i~~~~~~l~~l~~~I~~~~-~~~~~~---~~~~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
.|| | .| .|. --++|+|++-.+.-+.. ++...+ .-..|.+||.|+...+|..|...+..++
T Consensus 118 ARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 377 1 11 111 11345555444332211 111111 1236999999999999999999998888
Q ss_pred CCC----ceeccCCCC
Q 006191 320 PTD----WLLEQAPEP 331 (657)
Q Consensus 320 ~~~----~~v~~AP~P 331 (657)
|.. ..|+-|-.|
T Consensus 194 P~g~tepItVKFannP 209 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCeEEEecCCc
Confidence 864 334444444
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=92.55 E-value=0.36 Score=55.29 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.4
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEccc
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQT 230 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~ 230 (657)
....+|.|+|+|.+.++ +.|+++|+++ |.+.++.+..|.
T Consensus 176 ~~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred cCCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 34568999999997663 7899999987 677888777664
No 24
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=92.45 E-value=0.59 Score=39.89 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCcEEEEEecCHHHHHHHHHhccc
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
+.|+|||-|.+.++|....+..+.
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcC
Confidence 389999999999999998887654
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=92.40 E-value=0.47 Score=53.75 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=52.8
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
..+|.|.|||.+.++ +.|+++|+++.|+.|.+|.+
T Consensus 233 ~k~LfVgNL~~~~te---e~L~~~F~~f~~G~I~rV~~------------------------------------------ 267 (578)
T TIGR01648 233 VKILYVRNLMTTTTE---EIIEKSFSEFKPGKVERVKK------------------------------------------ 267 (578)
T ss_pred ccEEEEeCCCCCCCH---HHHHHHHHhcCCCceEEEEe------------------------------------------
Confidence 478999999986653 78999998876676544311
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEP 331 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 331 (657)
..+.|||+|++.++|..|.+.+... ....++|+.|..+
T Consensus 268 -------------------------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 268 -------------------------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred -------------------------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 0248999999999999999876554 2355667777544
No 26
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=92.39 E-value=0.42 Score=48.81 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.+-+.|+|||=+-++ -+|+..|+++ |.|.+|.|++|.
T Consensus 96 pkRLhVSNIPFrFRd---pDL~aMF~kf--G~VldVEIIfNE-------------------------------------- 132 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRD---PDLRAMFEKF--GKVLDVEIIFNE-------------------------------------- 132 (376)
T ss_pred CceeEeecCCccccC---ccHHHHHHhh--CceeeEEEEecc--------------------------------------
Confidence 467999999975443 3467777777 789999998862
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCC--CCcee----------ccCCCCCCccc
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNP--TDWLL----------EQAPEPNDVYW 336 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~--~~~~v----------~~AP~P~DIiW 336 (657)
.+ +.|-+||||++.++|..|.+.++.... ++..| +.-|-|.-.-|
T Consensus 133 ---------------------RG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~ 189 (376)
T KOG0125|consen 133 ---------------------RG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGW 189 (376)
T ss_pred ---------------------CC--CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCcccc
Confidence 11 248999999999999999999876422 22221 22345555667
Q ss_pred CCCCCch
Q 006191 337 PFFSASF 343 (657)
Q Consensus 337 ~NL~~~~ 343 (657)
+++....
T Consensus 190 ~~~~a~~ 196 (376)
T KOG0125|consen 190 KLLPAVG 196 (376)
T ss_pred ccccchh
Confidence 7776543
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=92.11 E-value=0.67 Score=35.73 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.3
Q ss_pred CCcEEEEEecCHHHHHHHHHhccc
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
..+.|||+|++..+|..|.+.++.
T Consensus 38 ~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 38 SKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCceEEEEeCCHHHHHHHHHHhCC
Confidence 368999999999999999886643
No 28
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=91.57 E-value=0.43 Score=51.36 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
-...+-|.++++|.+.++ ++|.+||+.. .|.+..+.++
T Consensus 7 ~~~~~~vr~rGLPwsat~---~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATE---KEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CCcceEEEecCCCccccH---HHHHHHHhcC---ceeEEEEecc
Confidence 345788999999997664 7889999865 4566666665
No 29
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.20 E-value=0.75 Score=44.80 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCcccC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDVYWP 337 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIiW~ 337 (657)
-.|.|||+|++..+|..|...++.-. ...++++.|=+++||+=.
T Consensus 51 mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 51 MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred ccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 36999999999999888877665432 245677888888888755
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=89.94 E-value=1.2 Score=50.59 Aligned_cols=87 Identities=10% Similarity=0.124 Sum_probs=63.1
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..++|.|.|||.+.++ ++|+++|+++ |.+.++.+.+|-
T Consensus 203 ~~~rLfVgnLp~~vte---edLk~lFs~F--G~I~svrl~~D~------------------------------------- 240 (612)
T TIGR01645 203 KFNRIYVASVHPDLSE---TDIKSVFEAF--GEIVKCQLARAP------------------------------------- 240 (612)
T ss_pred ccceEEeecCCCCCCH---HHHHHHHhhc--CCeeEEEEEecC-------------------------------------
Confidence 3479999999997664 7899999987 667777775531
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCCCCCCcccCC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAPEPNDVYWPF 338 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~N 338 (657)
...+..|+|||.|++.++|..|.+.+... ....++|..|..|.|=.|..
T Consensus 241 ----------------------~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~p 291 (612)
T TIGR01645 241 ----------------------TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQP 291 (612)
T ss_pred ----------------------CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCC
Confidence 00123689999999999999999887654 34556777766666655643
No 31
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=89.27 E-value=1.8 Score=33.39 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.6
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
.+.|||+|++.++|+.|.+..+..
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC
Confidence 689999999999999999876544
No 32
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=2.7 Score=48.61 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHH
Q 006191 401 TGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIF 452 (657)
Q Consensus 401 ~~~lpslil~i~n~llp~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~ 452 (657)
+..+-.+++.++|.+---+..+++.+|.+.|.|+.|.++.-|.|+||++|..
T Consensus 436 a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~y 487 (861)
T KOG2514|consen 436 AVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYY 487 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhc
Confidence 3334445566777777888899999999999999999999999999999975
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=88.64 E-value=1.2 Score=49.51 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=29.3
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
..+||.|.|||.+.++ +.|+++|++. |.|.+|.++.|
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~~d 124 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCIKD 124 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeec
Confidence 4689999999987653 7899999987 57777777553
No 34
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=88.36 E-value=1.1 Score=48.87 Aligned_cols=62 Identities=23% Similarity=0.411 Sum_probs=47.5
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHH
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDH 269 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~ 269 (657)
+||.|+|+|-++.+ +.|.++|+++ |+|..+.+|.+- .
T Consensus 293 ~tVFvRNL~fD~tE---Eel~~~fskF--G~v~ya~iV~~k-----------------------~--------------- 329 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTE---EELKEHFSKF--GEVKYAIIVKDK-----------------------D--------------- 329 (678)
T ss_pred ceEEEecCCccccH---HHHHHHHHhh--ccceeEEEEecc-----------------------C---------------
Confidence 89999999987764 8899999988 556555555431 0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhc
Q 006191 270 YGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQ 315 (657)
Q Consensus 270 ~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~ 315 (657)
...+.|+|||-|.++.+|+.|....
T Consensus 330 ---------------------T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 330 ---------------------TGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ---------------------CCCcccceEEEeccHHHHHHHHHhc
Confidence 1124699999999999999998864
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=86.88 E-value=4.1 Score=45.65 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=27.5
Q ss_pred CcceEEEEeccCC-CCCCchHHHHHHHhhhhCCCcceeeEEEc
Q 006191 187 PHQFTVLVRSIPV-SAGSTIGDTVENFFKEFHPTTYLSHTVIH 228 (657)
Q Consensus 187 ~~~~TVlV~~IP~-~~~~~~~~~l~~~F~~~~p~~v~~v~~~~ 228 (657)
+...+|+|.|||. +.+ .+.|++.|+++ |.|.++.+.+
T Consensus 273 ~~~~~l~v~nL~~~~vt---~~~L~~lF~~y--G~V~~vki~~ 310 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVN---CDRLFNLFCVY--GNVERVKFMK 310 (481)
T ss_pred CCCCEEEEeCCCCCCCC---HHHHHHHHHhc--CCeEEEEEEe
Confidence 3457999999997 344 37899999987 6777766543
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=86.02 E-value=3.6 Score=46.08 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=25.9
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
+++|.|.|||.+.++ ++|++.|+++ |.|.++.+
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v~i 34 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYVMM 34 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEEEE
Confidence 579999999997664 7899999887 56666544
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=85.91 E-value=2.5 Score=47.56 Aligned_cols=76 Identities=13% Similarity=0.276 Sum_probs=53.2
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.++|.|.|||.+.++ +.|+++|+++ |.+..+.++.|.
T Consensus 295 ~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~~~~~~~~-------------------------------------- 331 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE---DQIKELLESF--GDLKAFNLIKDI-------------------------------------- 331 (509)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEecC--------------------------------------
Confidence 478999999987654 7888999887 556666654421
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQA 328 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 328 (657)
..++..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 332 ---------------------~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 332 ---------------------ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred ---------------------CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 011236899999999999999998775443 233455544
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=84.55 E-value=3.5 Score=45.78 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=50.3
Q ss_pred CcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCh
Q 006191 187 PHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDL 266 (657)
Q Consensus 187 ~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~ 266 (657)
+...||.|.|||.+.++ ++|+++|+++ |.|.++.+.+|.
T Consensus 184 p~~~~l~v~nl~~~~te---~~l~~~f~~~--G~i~~v~~~~d~------------------------------------ 222 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITE---QELRQIFEPF--GDIEDVQLHRDP------------------------------------ 222 (457)
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcC------------------------------------
Confidence 45689999999987653 7899999876 566666665431
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 267 VDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 267 i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
...+..|.|||+|.+.++|..|.+.+..
T Consensus 223 -----------------------~~g~~~g~afV~f~~~e~A~~A~~~l~g 250 (457)
T TIGR01622 223 -----------------------ETGRSKGFGFIQFHDAEEAKEALEVMNG 250 (457)
T ss_pred -----------------------CCCccceEEEEEECCHHHHHHHHHhcCC
Confidence 0112368999999999999999987654
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=84.48 E-value=2.6 Score=48.03 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=50.8
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-.
T Consensus 106 ~~~rLfVGnLp~~~tE---e~Lr~lF~~f--G~I~sV~I~~D~~------------------------------------ 144 (612)
T TIGR01645 106 IMCRVYVGSISFELRE---DTIRRAFDPF--GPIKSINMSWDPA------------------------------------ 144 (612)
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHcc--CCEEEEEEeecCC------------------------------------
Confidence 4578999999987664 7899999987 6677877765410
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
..++.|+|||+|++.++|+.|.+.+..
T Consensus 145 -----------------------TgkskGfAFVeF~s~e~A~~Ai~~lnG 171 (612)
T TIGR01645 145 -----------------------TGKHKGFAFVEYEVPEAAQLALEQMNG 171 (612)
T ss_pred -----------------------CCCcCCeEEEEeCcHHHHHHHHHhcCC
Confidence 012369999999999999999986643
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=83.42 E-value=2.3 Score=45.46 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=66.3
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc-cchHH--------HHHHHHHHHHHHHhhhccCCCCCCC
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ-TSNLC--------RLMDYAKKLYGRLIHLQSDSNQEKN 259 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~-~~~l~--------~l~~~~~~~~~~le~~~~~~~~rPk 259 (657)
-.-|.|-.||+|..+ ++|.-.|++. |++-++.+..| .+--. .--++.+++.+.|..+.-+.+++=+
T Consensus 83 G~EVfvGkIPrD~~E---deLvplfEki--G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFE---DELVPLFEKI--GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CceEEecCCCccccc---hhhHHHHHhc--cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 357999999998664 6788899887 55666655554 11100 0112344555555544332222111
Q ss_pred CCccCCh-------HHHHHHHHHHHHHHHHHHHh---------hhhhcCCCCcEEEEEecCHHHHHHHHHhcccCCCC
Q 006191 260 QQRKVDL-------VDHYGKRLENIEENSRLERS---------EVSMARHELQAAFVSFKSRYGAAIAFHMQQSTNPT 321 (657)
Q Consensus 260 ~g~kvd~-------i~~~~~~l~~l~~~I~~~~~---------~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~ 321 (657)
|+-.+|- |-. .++-+++-+++++.-+ +..+..|+.|-|||.+.|-++|.++.|.+.+.+-.
T Consensus 158 vc~Svan~RLFiG~IPK-~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPK-TKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EEEeeecceeEeccCCc-cccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 1100000 000 0111122222222111 11122356899999999999999999988766543
No 41
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=82.57 E-value=1.4 Score=33.02 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
.+.|||+|.+.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 499999999999999999877543
No 42
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=80.40 E-value=12 Score=32.89 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCCCCcCcccc-----hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCC
Q 006191 528 FEVPAIHYHSE-----LPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKY 586 (657)
Q Consensus 528 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~ 586 (657)
...++|+.+.+ |++. +..+|++|||..|+ ++++-+++.+++.|+.+++.++|+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Qt--l~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQT--LVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcch--hhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556666554 4543 56889999888887 5777888999999999999998864
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=79.39 E-value=7.1 Score=41.66 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred CCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 292 RHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 292 ~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
.|+.++|.|.|++++.++.|+..++.+. ...+.|+.-|
T Consensus 83 GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 83 GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3557999999999999999998876442 3344444433
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=78.66 E-value=2.6 Score=42.64 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=60.6
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc--hHHHHHHHHHHHHHHHhhhc------------cCCCCC
Q 006191 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS--NLCRLMDYAKKLYGRLIHLQ------------SDSNQE 257 (657)
Q Consensus 192 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~--~l~~l~~~~~~~~~~le~~~------------~~~~~r 257 (657)
+.|-|+|++.++ .+++..|+++ |+|.++-|+.|.+ .+++-.. .+.+.+.|.+|+ +|..-+
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYgFVHiEdkta-aedairNLhgYtLhg~nInVeaSksKsk~s 78 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYGFVHIEDKTA-AEDAIRNLHGYTLHGVNINVEASKSKSKAS 78 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccceEEeecccc-cHHHHhhcccceecceEEEEEeccccCCCc
Confidence 457899986553 6788889988 8999999988876 2322222 233444455443 121112
Q ss_pred CC--CCccCChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc
Q 006191 258 KN--QQRKVDLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ 316 (657)
Q Consensus 258 Pk--~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~ 316 (657)
+| .|...+.-. .+|+++.. ++.---+..+ --.++|||-|+-.++|..|..-+.
T Consensus 79 tkl~vgNis~tct--n~ElRa~f---e~ygpviecd-ivkdy~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 79 TKLHVGNISPTCT--NQELRAKF---EKYGPVIECD-IVKDYAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred cccccCCCCcccc--CHHHhhhh---cccCCceeee-eecceeEEEEeeccchHHHHhccc
Confidence 23 222222100 01222211 1110000001 115899999999999999986554
No 45
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=75.70 E-value=2.2 Score=40.01 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC--CCCceecc
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQ 327 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~ 327 (657)
+.|.|||+|++..+|.-|...+..++ ...+.||+
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 47999999999999999999887665 34566654
No 46
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=75.57 E-value=8.6 Score=38.37 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=54.2
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
.+||.|.|||.+.+ .+.|.++|.++ |.+.++.+.+|-
T Consensus 115 ~~~l~v~nL~~~~~---~~~l~~~F~~~--g~~~~~~~~~d~-------------------------------------- 151 (306)
T COG0724 115 NNTLFVGNLPYDVT---EEDLRELFKKF--GPVKRVRLVRDR-------------------------------------- 151 (306)
T ss_pred CceEEEeCCCCCCC---HHHHHHHHHhc--CceeEEEeeecc--------------------------------------
Confidence 48999999998766 47899999988 444444443320
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP 329 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 329 (657)
...+..|.|||+|.++++|..|.+.+... ....+.|+.+.
T Consensus 152 ---------------------~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 152 ---------------------ETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ---------------------ccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 01224799999999999999999987633 23455555543
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=75.13 E-value=4 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.6
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..|.|||+|++..+|..|.+.++..
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3689999999999999999877654
No 48
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=68.25 E-value=16 Score=37.37 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=49.1
Q ss_pred ceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHH
Q 006191 189 QFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVD 268 (657)
Q Consensus 189 ~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~ 268 (657)
-.|+.|.-|+-++.+ ..|++.|+.+ |.+.++.+|+|.
T Consensus 101 y~TLFv~RLnydT~E---skLrreF~~Y--G~IkrirlV~d~-------------------------------------- 137 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSE---SKLRREFEKY--GPIKRIRLVRDK-------------------------------------- 137 (335)
T ss_pred cceeeeeeccccccH---HHHHHHHHhc--CcceeEEEeeec--------------------------------------
Confidence 469999999987765 6789999988 567788888752
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHh
Q 006191 269 HYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHM 314 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~ 314 (657)
...|+.|+|||.|+.+.+.++|...
T Consensus 138 ---------------------vTgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 138 ---------------------VTGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ---------------------ccCCccceEEEEeccHHHHHHHHHh
Confidence 0134579999999999999998764
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=63.10 E-value=13 Score=37.14 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCCC-----CCceeccCCCCCCcccCCCCCchHHHHHHHHHH
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTNP-----TDWLLEQAPEPNDVYWPFFSASFMRRWISKIVV 353 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~~-----~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 353 (657)
+.|+|||-|++..+|+.|...++.++. ..+.|+.| -+.+||..||.--
T Consensus 59 sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQ 111 (371)
T KOG0146|consen 59 SKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQ 111 (371)
T ss_pred CCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHH
Confidence 479999999999999999999987753 45666665 3578899998643
No 50
>smart00360 RRM RNA recognition motif.
Probab=61.75 E-value=11 Score=28.45 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.2
Q ss_pred CCcEEEEEecCHHHHHHHHHhcc
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQ 316 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~ 316 (657)
..+.|||+|++.++|..|.+.++
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcC
Confidence 47899999999999999988765
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=61.57 E-value=23 Score=38.79 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=57.8
Q ss_pred CCcc-eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC
Q 006191 186 QPHQ-FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKV 264 (657)
Q Consensus 186 ~~~~-~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kv 264 (657)
.+.. ++|.|.|||.+..+ +.|.+.|++. |.|.++.+++|-
T Consensus 14 ~~~~~~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D~---------------------------------- 54 (435)
T KOG0108|consen 14 SPGLSSSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYDR---------------------------------- 54 (435)
T ss_pred CcccccceEecCCCCcccH---HHHHHHHhcc--Cccceeeecccc----------------------------------
Confidence 3444 89999999986553 7899999877 567777777751
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCC
Q 006191 265 DLVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAP 329 (657)
Q Consensus 265 d~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP 329 (657)
+.+++.|.||++|.++++|..|...+.+.+ ++.+++..|.
T Consensus 55 -------------------------~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 55 -------------------------ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred -------------------------cCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 113357999999999999999998876543 3444444443
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=61.14 E-value=13 Score=40.05 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHH---HHhhhh-hcCCCCcEEEEEecCHHHHHHHHHhcccCC--C-CCceeccCCCCCCcccCCCCC
Q 006191 269 HYGKRLENIEENSRL---ERSEVS-MARHELQAAFVSFKSRYGAAIAFHMQQSTN--P-TDWLLEQAPEPNDVYWPFFSA 341 (657)
Q Consensus 269 ~~~~~l~~l~~~I~~---~~~~~~-~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~--~-~~~~v~~AP~P~DIiW~NL~~ 341 (657)
-++++|.-+-++|=+ .|--.+ ....+.|+|||||.+-+.|+.|...+.+.. + ..+.|...-+-.-..=.|+-.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 455777777776644 221111 123357999999999999999999876641 1 222222222234444555555
Q ss_pred chHHHHHH
Q 006191 342 SFMRRWIS 349 (657)
Q Consensus 342 ~~~~r~~R 349 (657)
++.+--++
T Consensus 175 ~k~keeIl 182 (506)
T KOG0117|consen 175 TKKKEEIL 182 (506)
T ss_pred cccHHHHH
Confidence 54443333
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=58.39 E-value=10 Score=38.07 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=76.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhc-c-C-CCCCC----C-
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQ-S-D-SNQEK----N- 259 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~-~-~-~~~rP----k- 259 (657)
..+|+.|-|+.++..+ +.+...|++. |+|.+..+++| ++.... . + ..++| +
T Consensus 5 ~prtlyvgnld~~vte---~~i~~lf~qi--g~v~~~k~i~~----------------e~~v~wa~~p~nQsk~t~~~hf 63 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTE---DFIATLFNQI--GSVTKTKVIFD----------------ELKVNWATAPGNQSKPTSNQHF 63 (321)
T ss_pred CCceEEeeccChhhHH---HHHHHHHHhc--cccccceeehh----------------hhccccccCcccCCCCccccce
Confidence 3589999999886554 6678889888 66777777776 111110 0 0 11122 1
Q ss_pred ---CCccCChHHHHHHHHHHHHH---HHHHHHhh-hhhcCCCCcEEEEEecCHHHHHHHHHhccc--------------C
Q 006191 260 ---QQRKVDLVDHYGKRLENIEE---NSRLERSE-VSMARHELQAAFVSFKSRYGAAIAFHMQQS--------------T 318 (657)
Q Consensus 260 ---~g~kvd~i~~~~~~l~~l~~---~I~~~~~~-~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~--------------~ 318 (657)
.|.-+..|++ |+|++--. ||.+.|-- -....|+.|++||+|-+.++|..|.|.... +
T Consensus 64 hvfvgdls~eI~~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDN--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcch--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 2222222332 22222111 11111110 011245679999999999999999885421 1
Q ss_pred CCCCc----------eeccCCCCCCcccCCCCCchHHHHHHHHH
Q 006191 319 NPTDW----------LLEQAPEPNDVYWPFFSASFMRRWISKIV 352 (657)
Q Consensus 319 ~~~~~----------~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 352 (657)
+|..+ .-+.+|+-.-|+-.|+.-...+..+|+.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F 185 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF 185 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc
Confidence 22111 12346666667777776655666666543
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=55.52 E-value=21 Score=33.92 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=16.8
Q ss_pred CcEEEEEecCHHHHHHHHH
Q 006191 295 LQAAFVSFKSRYGAAIAFH 313 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q 313 (657)
.+.|||.|++..+|.-|..
T Consensus 45 ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 45 PPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred CCeeEEEecCccchhhhhh
Confidence 6899999999999988765
No 55
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=53.92 E-value=28 Score=40.20 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccCC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
+.++|||+..+..+|+.|.|.+...+
T Consensus 456 ~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 456 PRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccc
Confidence 36899999999999999999987544
No 56
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.86 E-value=3.2 Score=34.69 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCcceEEEEeccCCC-CCCchHHHHHHHhhhh
Q 006191 186 QPHQFTVLVRSIPVS-AGSTIGDTVENFFKEF 216 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~-~~~~~~~~l~~~F~~~ 216 (657)
..+.+||+|+|||.. +++.+++.|+=||++-
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK~ 80 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQKP 80 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEecC
Confidence 468899999999983 3345566666666554
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=52.18 E-value=26 Score=33.31 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=47.1
Q ss_pred CCcceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC
Q 006191 186 QPHQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVD 265 (657)
Q Consensus 186 ~~~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd 265 (657)
..++.||.|.|||.... ++.|.+.|-+. |.|+++++.+|-
T Consensus 6 rnqd~tiyvgnld~kvs---~~~l~EL~iqa--gpVv~i~iPkDr----------------------------------- 45 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVS---EELLYELFIQA--GPVVNLHIPKDR----------------------------------- 45 (203)
T ss_pred cCCCceEEEecCCHHHH---HHHHHHHHHhc--Cceeeeecchhh-----------------------------------
Confidence 45678999999987443 35677777666 446666664320
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcc
Q 006191 266 LVDHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQ 316 (657)
Q Consensus 266 ~i~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~ 316 (657)
.. .+..|.||+.|.++++|.-|.+.+.
T Consensus 46 ------------------v~------~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 46 ------------------VT------QKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred ------------------hc------ccccceeEEEEechhhhHHHHHHHH
Confidence 00 1136899999999999999998764
No 58
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=51.87 E-value=43 Score=33.83 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=29.7
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccc
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTS 231 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~ 231 (657)
+.+-|.|-++.++.+. +.|++-|... |+|.+..+++|..
T Consensus 61 ~hfhvfvgdls~eI~~---e~lr~aF~pF--GevS~akvirD~~ 99 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDN---EKLREAFAPF--GEVSDAKVIRDMN 99 (321)
T ss_pred cceeEEehhcchhcch---HHHHHHhccc--cccccceEeeccc
Confidence 4677889998875543 6788888776 7888888888875
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=47.15 E-value=44 Score=37.04 Aligned_cols=26 Identities=35% Similarity=0.680 Sum_probs=22.0
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCC
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHP 218 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p 218 (657)
-|+.|+++|.+.. .++|+++|+...|
T Consensus 6 ~TlfV~~lp~~~~---~~qL~e~FS~vGP 31 (678)
T KOG0127|consen 6 ATLFVSRLPFSST---GEQLEEFFSYVGP 31 (678)
T ss_pred ceEEEecCCCccc---hhHHHHhhhcccC
Confidence 6999999999765 3789999998855
No 60
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=47.01 E-value=43 Score=32.49 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=52.0
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..+|+.|.||--.+. .+.|...|+++ |.|.+|.|.+|-
T Consensus 12 gm~SLkVdNLTyRTs---pd~LrrvFekY--G~vgDVyIPrdr------------------------------------- 49 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTS---PDDLRRVFEKY--GRVGDVYIPRDR------------------------------------- 49 (256)
T ss_pred cceeEEecceeccCC---HHHHHHHHHHh--Ccccceeccccc-------------------------------------
Confidence 357889999876443 36788888887 778888776541
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccC
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQA 328 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 328 (657)
. . ...-|.|||-|.+..+|+.|...+... +...+.|++|
T Consensus 50 --------------------~-T-r~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 50 --------------------Y-T-RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred --------------------c-c-ccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 0 0 013689999999999999988765433 2344555544
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=45.66 E-value=66 Score=34.69 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.3
Q ss_pred EEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcc
Q 006191 192 VLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQ 229 (657)
Q Consensus 192 VlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~ 229 (657)
|.|.|+|++.+. +.+.+.|+.. |.++++.+..|
T Consensus 79 ~~i~nl~~~~~~---~~~~d~f~~~--g~ilS~kv~~~ 111 (369)
T KOG0123|consen 79 VFIKNLDESIDN---KSLYDTFSEF--GNILSCKVATD 111 (369)
T ss_pred eeecCCCcccCc---HHHHHHHHhh--cCeeEEEEEEc
Confidence 999999997765 6789999988 77888877665
No 62
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=42.10 E-value=40 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=24.6
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC--CCCceeccCCCCCCc
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQSTN--PTDWLLEQAPEPNDV 334 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DI 334 (657)
.++|.+.|.+++.|..|..-....+ .....|+..|.+.|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 5899999999999999988766554 356667777766654
No 63
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=40.97 E-value=27 Score=33.89 Aligned_cols=22 Identities=36% Similarity=0.268 Sum_probs=19.8
Q ss_pred CCcEEEEEecCHHHHHHHHHhc
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQ 315 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~ 315 (657)
+-|+|||.|+|++-|.+|+.+.
T Consensus 91 SKgYAFVEFEs~eVA~IaAETM 112 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETM 112 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHh
Confidence 4799999999999999999864
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=37.76 E-value=42 Score=32.91 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.3
Q ss_pred CcEEEEEecCHHHHHHHHHhcc
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQ 316 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~ 316 (657)
.+.|||||.|.+.|..|...++
T Consensus 77 ~pvaFatF~s~q~A~aamnaLN 98 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALN 98 (284)
T ss_pred cceEEEEecchHHHHHHHHHhc
Confidence 5899999999999999887764
No 65
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=33.92 E-value=1.8e+02 Score=29.31 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=47.9
Q ss_pred cceEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEEEcccchHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChH
Q 006191 188 HQFTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTVIHQTSNLCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLV 267 (657)
Q Consensus 188 ~~~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~~~~~~~l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i 267 (657)
..|.+.|-|+.++.|+ ..|.+.|..+ |.|..|.+++|.
T Consensus 277 ~g~ciFvYNLspd~de---~~LWQlFgpF--GAv~nVKvirD~------------------------------------- 314 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADE---SILWQLFGPF--GAVTNVKVIRDF------------------------------------- 314 (360)
T ss_pred CeeEEEEEecCCCchH---hHHHHHhCcc--cceeeEEEEecC-------------------------------------
Confidence 3578888888887776 4566777655 677777776652
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcEEEEEecCHHHHHHHHHhccc
Q 006191 268 DHYGKRLENIEENSRLERSEVSMARHELQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 268 ~~~~~~l~~l~~~I~~~~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
..+++.|.+|||..+-++|.+|...+..
T Consensus 315 ----------------------ttnkCKGfgFVtMtNYdEAamAi~sLNG 342 (360)
T KOG0145|consen 315 ----------------------TTNKCKGFGFVTMTNYDEAAMAIASLNG 342 (360)
T ss_pred ----------------------CcccccceeEEEecchHHHHHHHHHhcC
Confidence 1134579999999999999999877643
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.68 E-value=39 Score=30.16 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 006191 13 NSGLCVLFFTLYSILRKQ 30 (657)
Q Consensus 13 ~~~~~~~~~~~F~~lR~~ 30 (657)
.++++.++++.|++.|+|
T Consensus 75 aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555667788887776
No 67
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=31.58 E-value=3.6e+02 Score=26.30 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHhcccc
Q 006191 627 IFPLPVLTLLFNEYCRKRFL 646 (657)
Q Consensus 627 ~~~l~~~t~~f~~~~~~~f~ 646 (657)
.+.+-++++...+|+++||+
T Consensus 183 ~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 183 YIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455566777888888875
No 68
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=31.36 E-value=1.2e+02 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=14.0
Q ss_pred CCCCCccccHHHHHHHHHHHHH
Q 006191 584 PKYETAGKFWPIVHNSMIFSLV 605 (657)
Q Consensus 584 ~~~es~G~~~~~~~~~~~~~l~ 605 (657)
|....+|+-||.+..-++.++.
T Consensus 8 ~~~~~~g~sW~~LVGVv~~al~ 29 (102)
T PF15176_consen 8 PGPGEGGRSWPFLVGVVVTALV 29 (102)
T ss_pred CCCCCCCcccHhHHHHHHHHHH
Confidence 4566779999885554444443
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=30.34 E-value=97 Score=32.53 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhhh-------cCCCCcEEEEEecCHHHHHHHHHhcccC
Q 006191 274 LENIEENSRLERSEVSM-------ARHELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 274 l~~l~~~I~~~~~~~~~-------~~~~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
+.++++++.++.++... +.++-|.|=|+|.+.+.|..|+|..+..
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 66777777777666532 1235789999999999999999987643
No 70
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=30.28 E-value=5.5e+02 Score=26.01 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=45.1
Q ss_pred hHHHHHhhhhhHHHHHHHHHHH-HhchhhHHHHHHHhc--CCCChHHHHhhhCCcchHHHHHHHHHHhhhhhhHHhHhhH
Q 006191 433 SDIQKSACNKVLWFMIWNIFFA-TVFSGSVLYQLNIVL--DPKNIPSRLGVAVPAQASFFIAYVVTSGWTGISSELFQIF 509 (657)
Q Consensus 433 S~~~~s~~~k~f~f~~~n~~lv-~~l~~~~~~~~~~~~--~~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~ 509 (657)
|..|+.+.-|......+...+. +.+.|+...-++... ++.+..+.++.++|.--.+++-.++..-+...+..++=+|
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4455566666666555544443 234455555555554 3456777778777665555544444443445566666666
Q ss_pred HHHH
Q 006191 510 PLIC 513 (657)
Q Consensus 510 ~l~~ 513 (657)
+++.
T Consensus 151 GI~l 154 (248)
T PF06790_consen 151 GIIL 154 (248)
T ss_pred HHHH
Confidence 6544
No 71
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.92 E-value=2.9e+02 Score=28.67 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhceeecCCCCCc---cccHHHHHHHHHHHHHHHHHHHHHHH
Q 006191 557 PLILPFLLIYLCLAYIIYRNQFINVYEPKYETA---GKFWPIVHNSMIFSLVLMHAIAVGIF 615 (657)
Q Consensus 557 Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~es~---G~~~~~~~~~~~~~l~~~q~~~~g~~ 615 (657)
|..+++|++..++-+-+||+-+.-..+... +. +..+|+++--+++|+++.+....-+|
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaivIs~pl~l~iF 106 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIVISEPLELKIF 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999986644332 11 24566666666777777776665555
No 72
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=29.40 E-value=72 Score=35.79 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.0
Q ss_pred CcEEEEEecCHHHHHHHHHhcccCC
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQSTN 319 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~~~ 319 (657)
.|.|||+|++.++|+.|.+.++...
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCE
Confidence 5889999999999999999887653
No 73
>PF02654 CobS: Cobalamin-5-phosphate synthase; InterPro: IPR003805 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CobS protein, a cobalamin-5-phosphate synthase that catyalzes the reactions: Adenosylcobinamide-GDP + alpha-ribazole-5'-P = adenosylcobalamin-5'-phosphate + GMP Adenosylcobinamide-GDP + alpha-ribazole = adenosylcobalamin + GMP The protein product from these catalyses is associated with a large complex of proteins and is induced by cobinamide. CobS is involved in part III of cobalamin biosynthesis, one of the late steps in adenosylcobalamin synthesis that, together with CobU, CobT, and CobC proteins, defines the nucleotide loop assembly pathway [, ].; GO: 0008818 cobalamin 5'-phosphate synthase activity, 0009236 cobalamin biosynthetic process
Probab=27.60 E-value=3.9e+02 Score=26.64 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc---eeecCCCCCccccHHHHH--HHHHHHHHHHHHHHHH
Q 006191 539 LPRILLFGLLGITYFFLAPLILPFLLIYLCLAYIIYRNQFI---NVYEPKYETAGKFWPIVH--NSMIFSLVLMHAIAVG 613 (657)
Q Consensus 539 y~~~l~~~~i~l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~ll---yvy~~~~es~G~~~~~~~--~~~~~~l~~~q~~~~g 613 (657)
|+....++.+.+-|+.++-+...-......+.-..-|...+ +..+|+.+.-|+.+..-. +++..+.++.-+..+
T Consensus 103 ~Gv~al~~~lllk~~~l~~l~~~~~~~~l~i~~~~~r~~~~~~~~~~~p~~~Glg~~f~~~~~~~~~~~~~~~~~~~~~- 181 (235)
T PF02654_consen 103 FGVLALVLVLLLKYAALSSLPSHGLALALLIAPVLARLSMLLLAAFSKPRPEGLGALFVGSAKKRQVLIALIILLLLAL- 181 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhHHhccCChhHHHHHHHHHHHHHH-
Confidence 34444455544444444443322222233333344555433 333454455566554433 334444443222222
Q ss_pred HHHhccccccceehhhHHHHHHHHHHHHhcccc
Q 006191 614 IFTIKKLSTASTLIFPLPVLTLLFNEYCRKRFL 646 (657)
Q Consensus 614 ~~~~~~~~~~~~~~~~l~~~t~~f~~~~~~~f~ 646 (657)
+.....+......+...+.+..+.+++++++.
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lG 213 (235)
T PF02654_consen 182 -FLGGIPWIGLLALLVALLLALLLARYARRRLG 213 (235)
T ss_pred -HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21111123333345555677778889998875
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=26.95 E-value=55 Score=28.21 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.1
Q ss_pred CcEEEEEecCHHHHHHHHHhccc
Q 006191 295 LQAAFVSFKSRYGAAIAFHMQQS 317 (657)
Q Consensus 295 ~~~AFVtF~s~~~a~~~~q~~~~ 317 (657)
.|+|||..++..+|..|+.-+..
T Consensus 57 rGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 57 RGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred CceEEEEehHhhhHHHHHHHhcc
Confidence 69999999999999999986543
No 75
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=26.51 E-value=3.6e+02 Score=25.16 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=21.2
Q ss_pred cCCCCCCc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006191 327 QAPEPNDV-YWPFFSASFMRRWISKIVVVVACILLTILFLIPV 368 (657)
Q Consensus 327 ~AP~P~DI-iW~NL~~~~~~r~~R~~~~~~~~~~l~~~~~iPv 368 (657)
.+|+++|. .|.|--++.---+--..+..+++..++..+.-|.
T Consensus 33 a~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~ 75 (188)
T KOG4050|consen 33 ARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQ 75 (188)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHH
Confidence 68999996 4666554433323233344444444444444343
No 76
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=26.35 E-value=3.3e+02 Score=26.46 Aligned_cols=91 Identities=12% Similarity=0.230 Sum_probs=49.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCccccHHHHHHHHHHHHHHHHH-HHHHHHHhccccc---cce
Q 006191 550 ITYFFLAPLILPFLLIYLCLAYIIYRNQFINVYEPKYETAGKFWPIVHNSMIFSLVLMHA-IAVGIFTIKKLST---AST 625 (657)
Q Consensus 550 l~Ys~i~Pli~~~~~~~f~~~y~v~Ky~llyvy~~~~es~G~~~~~~~~~~~~~l~~~q~-~~~g~~~~~~~~~---~~~ 625 (657)
.++..-.|+..+.+++||+...++-+.|.-+.++. .+.+....|+-+.-+ +..|...+++... ...
T Consensus 50 ~v~~~~~~~~i~~~i~yf~yLrYiL~~~~~f~id~----------epYR~FY~~Isli~~l~~~gyvlvr~~s~~~~~y~ 119 (206)
T PF09874_consen 50 YVFFISPLILIPLFIFYFIYLRYILIRNRNFMIDF----------EPYRFFYYGISLIGFLSFLGYVLVRRFSFEVYPYY 119 (206)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhccceeEech----------hHHHHHHHHHhhhhheeecchhhheeccchhhhHH
Confidence 34444566777778888888777655554444422 222233333333222 3345555554332 222
Q ss_pred -ehhhHHHHHHHHHHHHhcccccccc
Q 006191 626 -LIFPLPVLTLLFNEYCRKRFLPNFI 650 (657)
Q Consensus 626 -~~~~l~~~t~~f~~~~~~~f~~~~~ 650 (657)
..+...+..++|.++.+.+|.+..-
T Consensus 120 ~yL~~v~laVl~fr~~Fr~ky~RdyT 145 (206)
T PF09874_consen 120 TYLGFVFLAVLAFRYYFRSKYGRDYT 145 (206)
T ss_pred HHHHHHHHHHHHHhhheeeeecccce
Confidence 2233334567789999999998753
No 77
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.61 E-value=1.9e+02 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 006191 4 SALLTSVGINSGLCVLFFTLYSILRKQP 31 (657)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~~F~~lR~~~ 31 (657)
-+...++..-+++-.+++..|...|||+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455555555666666677777888773
No 78
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.10 E-value=1.1e+02 Score=24.26 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=26.1
Q ss_pred cEEEEEecCHHHHHHHHHhcccCCCCCceeccCCCCCCc
Q 006191 296 QAAFVSFKSRYGAAIAFHMQQSTNPTDWLLEQAPEPNDV 334 (657)
Q Consensus 296 ~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~P~DI 334 (657)
....+||+|..+|-.+-+.+.+.+- .++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi---~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI---PVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC---cEEEeCCChhc
Confidence 4678999999999888877655432 34566777776
No 79
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=22.92 E-value=1.3e+02 Score=32.66 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST 318 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~ 318 (657)
..|++||+|.+.++|..|...++..
T Consensus 75 s~gcCFv~~~trk~a~~a~~Alhn~ 99 (510)
T KOG0144|consen 75 SKGCCFVKYYTRKEADEAINALHNQ 99 (510)
T ss_pred ccceEEEEeccHHHHHHHHHHhhcc
Confidence 4799999999999999998887754
No 80
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.86 E-value=7.9e+02 Score=24.76 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHhhh
Q 006191 263 KVDLVDHYGKRLENIEENSRLERSEV 288 (657)
Q Consensus 263 kvd~i~~~~~~l~~l~~~I~~~~~~~ 288 (657)
+++.+--.+++|.+++.+|+..+.+.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788888888888776653
No 81
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.22 E-value=2.4e+02 Score=30.75 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=40.4
Q ss_pred CCcceeeEEE-cccch-HHHHHHHHHHHHHHHhhhccCCCCCCCCCccCChHHHHHHHHHHHHHHHHHHHhhhhhcCC--
Q 006191 218 PTTYLSHTVI-HQTSN-LCRLMDYAKKLYGRLIHLQSDSNQEKNQQRKVDLVDHYGKRLENIEENSRLERSEVSMARH-- 293 (657)
Q Consensus 218 p~~v~~v~~~-~~~~~-l~~l~~~~~~~~~~le~~~~~~~~rPk~g~kvd~i~~~~~~l~~l~~~I~~~~~~~~~~~~-- 293 (657)
++. ....++ .|.++ +..+.++.+++.++++.+..+..++| ++...++-++++++.+++++++.++-....+.
T Consensus 228 ~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 228 GDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp CCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred CCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 554 333333 55554 44556666666666554433221222 11123455666777777777766653222111
Q ss_pred C-CcEEEEEecCH
Q 006191 294 E-LQAAFVSFKSR 305 (657)
Q Consensus 294 ~-~~~AFVtF~s~ 305 (657)
. .+.-||.+.+.
T Consensus 304 ~la~~l~~~~g~~ 316 (406)
T PF02388_consen 304 PLAGALFIYYGDE 316 (406)
T ss_dssp EEEEEEEEEETTE
T ss_pred eEEEEEEEEECCE
Confidence 1 34446666543
No 82
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=22.13 E-value=1.5e+02 Score=34.10 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=37.7
Q ss_pred CCcEEEEEecCHHHHHHHHHhcccC--CCCCceeccCC-------------CCC--CcccCCCCCchHHHHHHHHH
Q 006191 294 ELQAAFVSFKSRYGAAIAFHMQQST--NPTDWLLEQAP-------------EPN--DVYWPFFSASFMRRWISKIV 352 (657)
Q Consensus 294 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP-------------~P~--DIiW~NL~~~~~~r~~R~~~ 352 (657)
+.|.|||.|.+.++|+.|.+.++.. +.+.+.++.++ .+. -|+=.|+..--..|-+|.++
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF 634 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF 634 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHH
Confidence 3799999999999999999987632 22333333332 222 45556666655666666654
No 83
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.80 E-value=75 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHcCCCCCceeeccccccCCC
Q 006191 9 SVGINSGLCVLFFTLY--SILRKQPSNYEVYVPRLLAKGS 46 (657)
Q Consensus 9 ~l~~~~~~~~~~~~~F--~~lR~~~~~~~iY~pr~~~~~~ 46 (657)
++..-+++|++.+++| |.+.|++.-+.||.|=--+.++
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~~~P~ 75 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIGLEPQ 75 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCCC
Confidence 4444555555555544 3333333345689887765544
No 84
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=21.65 E-value=79 Score=33.54 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCCCcEEEEEecCHHHHHHHHHhc
Q 006191 292 RHELQAAFVSFKSRYGAAIAFHMQ 315 (657)
Q Consensus 292 ~~~~~~AFVtF~s~~~a~~~~q~~ 315 (657)
++.||.|||.|..+++|+.|.|..
T Consensus 203 grpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 203 GRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred CCcccceEEEecCHHHHHHHHHHH
Confidence 456999999999999999998753
No 85
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=21.01 E-value=1.1e+02 Score=22.83 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=21.8
Q ss_pred eEEEEeccCCCCCCchHHHHHHHhhhhCCCcceeeEE
Q 006191 190 FTVLVRSIPVSAGSTIGDTVENFFKEFHPTTYLSHTV 226 (657)
Q Consensus 190 ~TVlV~~IP~~~~~~~~~~l~~~F~~~~p~~v~~v~~ 226 (657)
++|-|+|.|++. .+.+.+||++. |++.++.+
T Consensus 2 ~wI~V~Gf~~~~----~~~vl~~F~~f--GeI~~~~~ 32 (53)
T PF14605_consen 2 TWISVSGFPPDL----AEEVLEHFASF--GEIVDIYV 32 (53)
T ss_pred cEEEEEeECchH----HHHHHHHHHhc--CCEEEEEc
Confidence 589999999754 35677788875 56655443
No 86
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=20.50 E-value=8.8e+02 Score=26.07 Aligned_cols=60 Identities=10% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhhhhHHHHHHHHHHHHhch
Q 006191 399 VVTGYLPNLILLVFLKIVPPVMEFLSSIQGYISHSDIQKSACNKVLWFMIWNIFFATVFS 458 (657)
Q Consensus 399 ~i~~~lpslil~i~n~llp~i~~~ls~~eg~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~ 458 (657)
.+..+..+++-+++..++-++..+.++.+|..+....+.....+..-.-+-+.++..++.
T Consensus 204 Tl~A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~v~i~~~~~~~~~viI 263 (385)
T COG5438 204 TLAAFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKNVGINFSGLFLAGVII 263 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcccCcchhhhHHHHHHH
Confidence 344556666667777788899999999999999888888877777444444445444443
Done!